============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1.pdb ============================================================================= Error: recognition of atom ATOM 19 'H5' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 20 'HO5 DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 24 1H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 25 2H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 47 C5M DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 51 HN3 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 52 1HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 53 2HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 54 3HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 81 'H5' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 85 1H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 86 2H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 114 'H5' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 118 1H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 119 2H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 144 'H5' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 148 1H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 149 2H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 176 'H5' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 180 1H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 181 2H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 203 C5M DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 207 HN3 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 208 1HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 209 2HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 210 3HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 238 'H5' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 242 1H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 243 2H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 270 'H5' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 274 1H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 275 2H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 302 'H5' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 306 1H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 307 2H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 329 C5M DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 333 HN3 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 334 1HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 335 2HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 336 3HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 358 C5M DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 362 HN3 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 363 1HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 364 2HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 365 3HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 390 'H5' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 394 1H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 395 2H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 420 'H5' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 424 1H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 425 2H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 450 'H5' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 454 1H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 455 2H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 483 'H5' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 487 1H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 488 2H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 515 'H5' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 519 1H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 520 2H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 547 'H5' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 551 1H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 552 2H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 580 'H5' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 584 1H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 585 2H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 612 'H5' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 616 1H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 617 2H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 642 'H5' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 646 1H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 647 2H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 675 'H5' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 679 1H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 680 2H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 705 'H5' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 709 1H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 710 2H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 732 C5M DT A 24 ... failed. Atom erased. Error: recognition of atom ATOM 736 HN3 DT A 24 ... failed. Atom erased. Error: recognition of atom ATOM 737 1HM5 DT A 24 ... failed. Atom erased. Error: recognition of atom ATOM 738 2HM5 DT A 24 ... failed. Atom erased. Error: recognition of atom ATOM 739 3HM5 DT A 24 ... failed. Atom erased. Error: recognition of atom ATOM 767 'H5' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 771 1H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 772 2H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 794 C5M DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 798 HN3 DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 799 1HM5 DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 800 2HM5 DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 801 3HM5 DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 829 'H5' DG A 27 ... failed. Atom erased. Error: recognition of atom ATOM 833 1H2' DG A 27 ... failed. Atom erased. Error: recognition of atom ATOM 834 2H2' DG A 27 ... failed. Atom erased. Error: recognition of atom ATOM 862 'H5' DG A 28 ... failed. Atom erased. Error: recognition of atom ATOM 866 1H2' DG A 28 ... failed. Atom erased. Error: recognition of atom ATOM 867 2H2' DG A 28 ... failed. Atom erased. Error: recognition of atom ATOM 889 C5M DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 893 HN3 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 894 1HM5 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 895 2HM5 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 896 3HM5 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 923 'H5' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 927 1H2' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 928 2H2' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 953 'H5' DC A 31 ... failed. Atom erased. Error: recognition of atom ATOM 957 1H2' DC A 31 ... failed. Atom erased. Error: recognition of atom ATOM 958 2H2' DC A 31 ... failed. Atom erased. Error: recognition of atom ATOM 986 'H5' DG A 32 ... failed. Atom erased. Error: recognition of atom ATOM 990 1H2' DG A 32 ... failed. Atom erased. Error: recognition of atom ATOM 991 2H2' DG A 32 ... failed. Atom erased. Error: recognition of atom ATOM 1016 'H5' DC A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1020 1H2' DC A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1021 2H2' DC A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1048 'H5' DA A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1052 1H2' DA A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1053 2H2' DA A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1075 C5M DT A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1079 HN3 DT A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1080 1HM5 DT A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1081 2HM5 DT A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1082 3HM5 DT A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1107 'H5' DC A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1111 1H2' DC A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1112 2H2' DC A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1137 'H5' DC A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1141 1H2' DC A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1142 2H2' DC A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1170 'H5' DG A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1174 1H2' DG A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1175 2H2' DG A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1197 C5M DT A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1201 HN3 DT A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1202 1HM5 DT A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1203 2HM5 DT A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1204 3HM5 DT A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1231 'H5' DA A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1235 1H2' DA A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1236 2H2' DA A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1263 'H5' DA A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1267 1H2' DA A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1268 2H2' DA A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1293 'H5' DC A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1297 1H2' DC A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1298 2H2' DC A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1325 'H5' DA A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1329 1H2' DA A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1330 2H2' DA A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1352 C5M DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1356 HN3 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1357 1HM5 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1358 2HM5 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1359 3HM5 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1387 'H5' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1391 1H2' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1392 2H2' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1417 'H5' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1421 1H2' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1422 2H2' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1444 C5M DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1448 HN3 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1449 1HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1450 2HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1451 3HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1476 'H5' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1480 1H2' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1481 2H2' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1506 'H5' DC A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1510 1H2' DC A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1511 2H2' DC A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1538 'H5' DA A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1542 1H2' DA A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1543 2H2' DA A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1571 'H5' DG A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1575 1H2' DG A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1576 2H2' DG A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1601 'H5' DC A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1605 1H2' DC A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1606 2H2' DC A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1628 C5M DT A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1632 HN3 DT A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1633 1HM5 DT A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1634 2HM5 DT A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1635 3HM5 DT A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1663 'H5' DG A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1667 1H2' DG A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1668 2H2' DG A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1690 C5M DT A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1694 HN3 DT A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1695 1HM5 DT A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1696 2HM5 DT A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1697 3HM5 DT A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1724 'H5' DA A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1728 1H2' DA A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1729 2H2' DA A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1751 C5M DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1755 HN3 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1756 1HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1757 2HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1758 3HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1786 'H5' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1790 1H2' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1791 2H2' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1813 C5M DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1817 HN3 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1818 1HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1819 2HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1820 3HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1847 'H5' DA A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1851 1H2' DA A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1852 2H2' DA A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1874 C5M DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1878 HN3 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1879 1HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1880 2HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1881 3HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1909 'H5' DG A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1913 1H2' DG A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1914 2H2' DG A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1942 'H5' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1946 1H2' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1947 2H2' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1975 'H5' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1979 1H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1980 2H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 2002 C5M DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2006 HN3 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2007 1HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2008 2HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2009 3HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2034 'H5' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2038 1H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2039 2H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2067 'H5' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2071 1H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2072 2H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2099 'H5' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2103 1H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2104 2H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2129 'H5' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2133 1H2' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2134 2H2' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2162 'H5' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2166 1H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2167 2H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2194 'H5' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2198 1H2' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2199 2H2' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2227 'H5' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2231 1H2' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2232 2H2' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2260 'H5' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2264 1H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2265 2H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2287 C5M DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2291 HN3 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2292 1HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2293 2HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2294 3HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2319 'H5' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2323 1H2' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2324 2H2' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2346 C5M DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2350 HN3 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2351 1HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2352 2HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2353 3HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2380 'H5' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2384 1H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2385 2H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2413 'H5' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2417 1H2' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2418 2H2' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2445 'H5' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2449 1H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2450 2H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2477 'H5' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2481 1H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2482 2H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2504 C5M DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2508 HN3 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2509 1HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2510 2HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2511 3HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2538 'H5' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2542 1H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2543 2H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2568 'H5' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2572 1H2' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2573 2H2' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2598 'H5' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2602 1H2' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2603 2H2' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2630 'H5' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2634 1H2' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2635 2H2' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2663 'H5' DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2664 'HO3 DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2668 1H2' DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2669 2H2' DG A 86 ... failed. Atom erased. Missing atom added: HETATM 1 P DA A 1 0.974 -0.367 -2.456 1.00 0.00 P Missing atom added: HETATM 24 H5'2 DA A 1 2.015 -2.059 -0.290 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 1 1.379 0.501 3.651 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 1 1.550 -1.343 4.404 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 2 6.403 -0.899 4.659 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 2 4.245 -4.980 6.718 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 2 5.640 -5.116 7.781 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 2 1.392 -7.810 5.031 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 2 4.007 -6.017 1.715 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 2 3.199 -5.818 1.001 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 2 4.441 -6.999 1.481 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 2 4.784 -5.256 1.578 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 3 8.623 -6.847 7.903 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 3 6.894 -10.683 8.768 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 3 7.349 -11.039 6.854 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 4 10.392 -12.930 8.061 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 4 10.011 -16.255 5.443 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 4 11.506 -15.356 4.466 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 5 15.114 -15.552 5.192 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 5 13.040 -18.857 1.976 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 5 14.696 -18.300 1.003 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 6 17.341 -20.971 2.181 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 6 17.977 -21.337 -2.316 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 6 19.369 -19.935 -2.013 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 7 21.598 -23.559 -1.785 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 7 23.123 -20.675 -5.332 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 7 24.435 -21.842 -5.446 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 7 22.356 -16.207 -4.915 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 7 21.838 -18.102 -0.825 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 7 20.854 -17.683 -0.605 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 7 22.606 -17.451 -0.397 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 7 21.915 -19.090 -0.365 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 8 26.653 -20.221 -3.347 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 8 27.883 -16.680 -1.341 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 8 28.446 -18.114 -0.067 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 9 28.370 -16.276 -5.732 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 9 26.981 -11.946 -4.668 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 9 28.609 -11.916 -3.509 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 10 28.767 -13.854 -9.212 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 10 26.480 -15.226 -11.395 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 10 27.995 -16.441 -11.867 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 11 28.242 -17.759 -8.416 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 11 24.622 -20.493 -9.324 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 11 25.729 -21.596 -10.133 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 11 20.232 -19.913 -9.897 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 11 22.882 -16.335 -11.188 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 11 22.178 -15.550 -10.875 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 11 22.742 -16.503 -12.269 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 11 23.902 -15.951 -11.038 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 12 26.749 -21.715 -13.859 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 12 24.232 -23.276 -13.593 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 12 24.744 -24.697 -14.494 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 12 20.552 -21.587 -14.407 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 12 23.426 -18.165 -13.475 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 12 22.775 -17.723 -12.727 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 12 23.255 -17.693 -14.441 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 12 24.464 -18.039 -13.183 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 13 30.130 -22.583 -16.806 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 13 32.200 -22.966 -20.868 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 13 32.523 -24.934 -21.009 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 14 26.736 -24.470 -20.506 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 14 23.974 -24.796 -21.214 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 14 23.981 -24.568 -19.228 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 15 24.258 -18.587 -19.664 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 15 25.235 -17.511 -16.924 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 15 24.627 -15.962 -18.032 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 16 18.851 -19.095 -16.078 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 16 16.721 -19.632 -20.115 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 16 15.707 -20.602 -18.691 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 17 12.861 -20.157 -16.447 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 17 12.416 -24.002 -16.586 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 17 13.117 -23.387 -14.818 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 18 10.591 -23.805 -12.323 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 18 12.659 -26.561 -9.806 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 18 13.353 -24.873 -8.991 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 19 10.698 -24.490 -6.048 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 19 13.211 -23.825 -2.893 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 19 13.346 -21.985 -3.664 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 20 9.128 -22.392 -1.446 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 20 7.433 -21.473 1.492 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 20 6.743 -20.050 0.269 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 21 3.819 -22.524 -0.878 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 21 1.879 -18.737 1.943 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 21 1.472 -17.748 0.254 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 22 -1.327 -19.946 -2.615 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 22 -2.388 -17.028 -5.237 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 22 -1.417 -17.913 -6.744 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 23 -5.765 -20.555 -6.295 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 23 -7.396 -17.236 -9.332 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 23 -5.942 -17.873 -10.547 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 24 -9.117 -20.961 -10.913 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 24 -7.661 -18.951 -15.264 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 24 -9.143 -19.581 -15.973 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 24 -3.377 -18.400 -16.392 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 24 -3.912 -22.095 -13.642 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 24 -3.081 -21.908 -12.962 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 24 -3.587 -22.772 -14.434 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 24 -4.733 -22.555 -13.091 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 25 -11.518 -22.314 -17.616 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 25 -11.837 -20.371 -21.569 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 25 -9.985 -21.067 -21.857 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 26 -9.889 -24.223 -23.529 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 26 -7.146 -22.952 -24.044 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 26 -7.373 -22.594 -25.751 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 26 -3.477 -24.029 -22.632 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 26 -6.611 -25.841 -19.757 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 26 -6.302 -25.326 -18.848 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 26 -6.139 -26.825 -19.795 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 26 -7.694 -25.963 -19.752 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 27 -10.904 -24.002 -28.959 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 27 -6.786 -26.730 -28.889 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 27 -8.261 -28.066 -29.078 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 28 -7.644 -29.806 -30.015 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 28 -5.855 -31.607 -33.455 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 28 -4.890 -29.997 -32.767 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 29 -2.961 -31.894 -30.794 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 29 -3.129 -34.322 -27.960 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 29 -1.732 -34.592 -26.925 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 29 -4.311 -32.531 -22.110 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 29 -7.175 -31.866 -25.654 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 29 -7.468 -30.839 -25.432 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 29 -7.900 -32.551 -25.207 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 29 -7.170 -32.011 -26.736 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 30 2.910 -33.146 -29.125 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 30 2.422 -29.196 -31.885 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 30 2.270 -27.814 -30.448 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 31 6.155 -28.041 -26.367 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 31 4.982 -24.645 -29.388 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 31 4.068 -23.637 -27.924 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 32 4.414 -21.914 -25.172 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 32 2.338 -20.229 -28.614 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 32 1.191 -19.745 -27.050 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 33 1.678 -16.119 -27.045 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 33 -2.035 -14.509 -26.996 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 33 -1.787 -14.582 -25.013 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 34 1.513 -13.829 -22.907 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 34 -0.284 -10.890 -19.586 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 34 0.908 -12.050 -18.477 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 35 5.179 -12.823 -20.142 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 35 6.640 -16.021 -19.404 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 35 7.810 -15.694 -18.131 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 35 3.089 -19.440 -17.730 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 35 4.216 -18.462 -22.086 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 35 3.206 -18.286 -22.463 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 35 4.493 -19.502 -22.287 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 35 4.911 -17.805 -22.614 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 36 7.509 -10.289 -15.858 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 36 4.912 -6.828 -14.859 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 36 4.164 -8.187 -13.598 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 37 6.406 -7.418 -10.302 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 37 2.247 -8.141 -8.061 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 37 2.724 -10.082 -8.115 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 38 5.082 -5.215 -6.008 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 38 3.909 -7.072 -1.585 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 38 5.582 -8.153 -1.418 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 39 8.535 -5.099 0.702 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 39 9.260 -9.199 2.847 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 39 10.663 -8.433 3.583 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 39 8.721 -12.853 0.764 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 39 8.197 -9.220 -2.116 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 39 7.286 -9.551 -2.590 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 39 9.060 -9.471 -2.716 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 39 8.164 -8.161 -1.912 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 40 13.167 -6.411 3.105 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 40 16.302 -9.782 2.406 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 40 17.116 -8.797 0.868 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 41 19.230 -7.828 1.428 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 41 21.947 -11.010 0.343 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 41 20.357 -12.137 0.787 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 42 22.623 -7.289 -1.249 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 42 25.170 -7.349 0.716 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 42 25.899 -8.271 -0.900 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 43 24.485 -5.442 -5.528 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 43 24.659 -7.862 -8.953 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 43 23.736 -9.184 -7.770 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 44 20.423 -7.994 -9.602 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 44 19.606 -12.381 -8.976 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 44 18.243 -12.038 -10.035 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 44 18.957 -13.599 -4.656 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 44 21.347 -9.739 -4.649 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 44 22.105 -10.080 -3.931 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 44 20.575 -9.186 -4.092 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 44 21.829 -9.037 -5.344 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 45 14.347 -10.036 -10.417 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 45 13.114 -14.139 -9.521 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 45 13.510 -13.616 -7.632 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 46 9.656 -10.655 -10.815 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 46 8.135 -14.428 -7.656 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 46 7.909 -13.221 -6.079 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 47 3.391 -12.806 -7.849 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 47 1.230 -12.751 -3.994 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 47 -0.093 -12.715 -5.153 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 47 1.678 -12.591 0.268 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 47 1.427 -8.740 -2.276 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 47 2.280 -8.250 -1.810 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 47 0.507 -8.408 -1.793 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 47 1.393 -8.483 -3.333 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 48 -2.432 -11.285 -6.938 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 48 -5.949 -12.697 -4.677 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 48 -5.772 -10.892 -3.835 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 49 -7.980 -8.170 -5.632 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 49 -9.676 -6.337 -2.043 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 49 -7.941 -5.343 -2.027 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 50 -9.616 -2.707 -4.822 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 50 -9.824 0.226 -1.626 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 50 -8.131 0.914 -2.437 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 51 -9.770 3.518 -4.599 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 51 -7.266 6.288 -2.269 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 51 -5.929 6.044 -3.735 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 52 -6.937 8.859 -6.255 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 52 -2.678 10.000 -5.745 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 52 -2.328 8.713 -7.234 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 53 -3.179 12.158 -9.795 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 53 -0.022 9.372 -11.410 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 53 0.469 10.708 -12.444 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 53 0.177 5.193 -12.354 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 53 -3.950 6.137 -10.613 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 53 -3.948 5.383 -9.826 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 53 -4.437 5.731 -11.502 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 53 -4.500 7.014 -10.271 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 54 0.017 12.525 -15.346 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 54 3.134 9.871 -16.910 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 54 1.641 8.758 -17.637 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 55 1.706 10.696 -20.910 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 55 0.654 6.148 -21.341 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 55 1.128 6.361 -23.022 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 55 -2.703 4.079 -19.637 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 55 -2.867 8.462 -18.219 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 55 -3.054 8.230 -17.168 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 55 -3.823 8.649 -18.718 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 55 -2.254 9.364 -18.280 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 56 0.197 7.309 -26.244 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 56 -1.104 3.183 -26.737 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 56 -2.950 3.834 -26.326 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 57 -3.720 4.525 -29.986 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 57 -7.425 3.284 -27.365 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 57 -8.156 2.818 -28.896 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 57 -8.997 5.277 -23.891 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 57 -5.543 7.818 -25.562 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 57 -5.030 7.961 -24.611 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 57 -6.198 8.671 -25.751 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 57 -4.805 7.749 -26.362 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 58 -9.974 3.809 -31.705 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 58 -13.448 2.663 -29.303 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 58 -13.602 4.592 -28.798 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 59 -15.796 5.448 -31.917 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 59 -16.941 7.813 -28.048 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 59 -18.486 8.091 -28.842 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 59 -13.864 9.951 -25.442 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 59 -12.295 9.289 -29.727 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 59 -11.293 8.961 -29.437 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 59 -12.270 10.363 -29.934 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 59 -12.590 8.761 -30.638 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 60 -20.477 10.402 -30.588 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 60 -21.545 13.044 -27.246 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 60 -19.820 13.910 -27.768 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 61 -22.035 16.006 -30.211 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 61 -18.792 18.679 -28.104 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 61 -19.851 20.023 -28.515 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 61 -14.631 16.670 -27.392 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 61 -16.409 15.860 -31.592 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 61 -16.170 14.795 -31.613 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 61 -15.614 16.416 -32.095 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 61 -17.349 16.025 -32.122 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 62 -20.537 22.570 -30.725 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 62 -17.393 24.973 -29.391 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 62 -16.367 24.156 -30.900 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 63 -17.242 27.001 -33.364 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 63 -13.015 27.806 -33.026 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 63 -12.793 26.509 -34.530 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 64 -12.845 28.968 -37.363 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 64 -8.861 27.505 -38.195 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 64 -9.756 26.221 -39.438 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 65 -9.590 28.642 -42.379 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 65 -9.407 24.148 -43.672 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 65 -8.602 24.735 -45.122 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 65 -12.496 21.135 -41.970 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 65 -14.168 25.432 -42.116 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 65 -14.529 25.479 -41.085 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 65 -14.991 25.121 -42.767 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 65 -13.834 26.427 -42.420 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 66 -9.565 25.855 -48.666 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 66 -10.116 21.771 -49.840 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 66 -12.002 22.070 -49.248 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 67 -12.613 22.856 -53.188 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 67 -14.476 19.047 -54.063 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 67 -16.112 19.925 -53.321 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 68 -17.492 21.207 -56.555 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 68 -20.765 18.458 -55.481 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 68 -21.588 20.047 -54.591 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 69 -23.600 21.312 -57.652 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 69 -26.997 20.869 -54.833 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 69 -26.649 22.794 -54.418 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 70 -29.268 24.134 -56.879 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 70 -31.209 25.764 -53.499 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 70 -29.962 27.313 -53.704 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 71 -32.429 29.587 -55.714 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 71 -31.401 32.558 -52.649 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 71 -29.795 33.064 -53.726 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 72 -31.725 35.799 -55.479 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 72 -29.206 38.385 -53.060 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 72 -27.915 38.279 -54.583 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 73 -27.888 39.170 -57.803 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 73 -24.496 41.152 -55.655 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 73 -23.740 40.221 -57.255 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 74 -23.348 43.753 -58.681 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 74 -19.410 42.104 -59.808 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 74 -19.025 43.748 -60.303 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 74 -18.762 37.997 -61.284 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 74 -23.256 38.719 -60.764 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 74 -23.472 37.889 -60.093 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 74 -23.437 38.410 -61.795 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 74 -23.906 39.559 -60.521 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 75 -19.093 45.787 -63.101 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 75 -15.690 43.668 -65.015 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 75 -17.136 42.690 -65.990 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 76 -16.895 45.022 -69.008 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 76 -18.499 40.548 -69.908 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 76 -18.463 41.086 -71.582 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 76 -21.940 38.384 -68.759 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 76 -22.001 42.496 -66.641 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 76 -22.211 42.113 -65.634 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 76 -22.956 42.784 -67.105 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 76 -21.384 43.398 -66.543 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 77 -20.098 43.080 -72.298 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 77 -19.448 43.488 -76.197 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 77 -17.907 42.694 -75.201 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 78 -23.308 40.312 -75.023 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 78 -22.967 36.029 -74.961 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 78 -23.241 36.874 -73.169 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 79 -27.334 36.159 -71.690 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 79 -29.038 36.216 -69.339 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 79 -28.622 34.323 -69.827 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 80 -24.465 32.187 -69.031 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 80 -22.358 30.000 -72.077 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 80 -20.974 31.262 -71.379 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 81 -19.928 28.364 -67.948 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 81 -17.395 31.988 -68.397 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 81 -16.153 31.097 -67.526 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 81 -17.625 36.179 -68.447 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 81 -21.355 34.226 -66.519 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 81 -22.101 34.723 -67.136 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 81 -21.199 34.796 -65.603 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 81 -21.698 33.224 -66.269 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 82 -14.497 29.860 -64.604 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 82 -12.759 34.228 -64.654 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 82 -14.200 34.691 -63.347 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 83 -14.059 33.900 -59.700 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 83 -14.598 37.411 -58.745 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 83 -16.109 36.390 -57.925 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 84 -15.761 35.878 -54.062 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 84 -17.474 39.082 -52.678 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 84 -18.605 37.511 -52.178 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 85 -16.514 38.571 -48.038 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 85 -20.871 40.383 -47.744 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 85 -21.605 38.528 -47.612 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 86 -21.890 38.679 -43.883 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 86 -26.223 37.802 -44.422 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 86 -25.750 35.870 -44.622 1.00 0.00 H Number of atoms: 2733 Number of residues: 86 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. A 1 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. A 1 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. A 1 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. A 1 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. A 1 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2950 Number of angles built: 5357 Number of dihedrals built: 8007 Number of impropers built: 585 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 3724971 Number of van der Waals pairs: 322597 Number of H-bonds built: 37 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 6 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 200253.8647 kcal/mol (199774.5152 without restraints) Performing minimization step: 2. Total energy = 196359.5827 kcal/mol (195900.1964 without restraints) Performing minimization step: 3. Total energy = 192628.3239 kcal/mol (192187.4727 without restraints) Performing minimization step: 4. Total energy = 189048.5813 kcal/mol (188624.9750 without restraints) Performing minimization step: 5. Total energy = 185609.9502 kcal/mol (185202.4212 without restraints) Performing minimization step: 6. Total energy = 182303.0045 kcal/mol (181910.4940 without restraints) Performing minimization step: 7. Total energy = 179119.1876 kcal/mol (178740.7334 without restraints) Performing minimization step: 8. Total energy = 176050.7151 kcal/mol (175685.4408 without restraints) Performing minimization step: 9. Total energy = 173090.4903 kcal/mol (172737.5962 without restraints) Performing minimization step: 10. Total energy = 170232.0300 kcal/mol (169890.7846 without restraints) Performing minimization step: 11. Total energy = 167469.3985 kcal/mol (167139.1315 without restraints) Performing minimization step: 12. Total energy = 164797.1505 kcal/mol (164477.2461 without restraints) Performing minimization step: 13. Total energy = 162210.2800 kcal/mol (161900.1717 without restraints) Performing minimization step: 14. Total energy = 159704.1761 kcal/mol (159403.3418 without restraints) Performing minimization step: 15. Total energy = 157274.5841 kcal/mol (156982.5410 without restraints) Performing minimization step: 16. Total energy = 154917.5698 kcal/mol (154633.8716 without restraints) Performing minimization step: 17. Total energy = 152629.4901 kcal/mol (152353.7229 without restraints) Performing minimization step: 18. Total energy = 150406.9649 kcal/mol (150138.7445 without restraints) Performing minimization step: 19. Total energy = 148246.8536 kcal/mol (147985.8223 without restraints) Performing minimization step: 20. Total energy = 146146.2332 kcal/mol (145892.0586 without restraints) Performing minimization step: 21. Total energy = 144102.3800 kcal/mol (143854.7516 without restraints) Performing minimization step: 22. Total energy = 142112.7516 kcal/mol (141871.3795 without restraints) Performing minimization step: 23. Total energy = 140174.9719 kcal/mol (139939.5848 without restraints) Performing minimization step: 24. Total energy = 138286.8173 kcal/mol (138057.1614 without restraints) Performing minimization step: 25. Total energy = 136446.2044 kcal/mol (136222.0416 without restraints) Performing minimization step: 26. Total energy = 134651.1788 kcal/mol (134432.2858 without restraints) Performing minimization step: 27. Total energy = 132899.9051 kcal/mol (132686.0719 without restraints) Performing minimization step: 28. Total energy = 131190.6570 kcal/mol (130981.6859 without restraints) Performing minimization step: 29. Total energy = 129521.8098 kcal/mol (129317.5148 without restraints) Performing minimization step: 30. Total energy = 127891.8328 kcal/mol (127692.0386 without restraints) Performing minimization step: 31. Total energy = 126299.2816 kcal/mol (126103.8225 without restraints) Performing minimization step: 32. Total energy = 124742.7921 kcal/mol (124551.5117 without restraints) Performing minimization step: 33. Total energy = 123221.0756 kcal/mol (123033.8259 without restraints) Performing minimization step: 34. Total energy = 121732.9121 kcal/mol (121549.5532 without restraints) Performing minimization step: 35. Total energy = 120277.1467 kcal/mol (120097.5457 without restraints) Performing minimization step: 36. Total energy = 118852.6841 kcal/mol (118676.7154 without restraints) Performing minimization step: 37. Total energy = 117458.4854 kcal/mol (117286.0293 without restraints) Performing minimization step: 38. Total energy = 116093.5636 kcal/mol (115924.5067 without restraints) Performing minimization step: 39. Total energy = 114756.9806 kcal/mol (114591.2149 without restraints) Performing minimization step: 40. Total energy = 113447.8438 kcal/mol (113285.2665 without restraints) Performing minimization step: 41. Total energy = 112165.3033 kcal/mol (112005.8166 without restraints) Performing minimization step: 42. Total energy = 110908.5490 kcal/mol (110752.0594 without restraints) Performing minimization step: 43. Total energy = 109676.8081 kcal/mol (109523.2266 without restraints) Performing minimization step: 44. Total energy = 108469.3429 kcal/mol (108318.5844 without restraints) Performing minimization step: 45. Total energy = 107285.4483 kcal/mol (107137.4316 without restraints) Performing minimization step: 46. Total energy = 106124.4509 kcal/mol (105979.0980 without restraints) Performing minimization step: 47. Total energy = 104985.7055 kcal/mol (104842.9420 without restraints) Performing minimization step: 48. Total energy = 103868.5944 kcal/mol (103728.3489 without restraints) Performing minimization step: 49. Total energy = 102772.5256 kcal/mol (102634.7298 without restraints) Performing minimization step: 50. Total energy = 101696.9315 kcal/mol (101561.5198 without restraints) Performing minimization step: 51. Total energy = 100641.2672 kcal/mol (100508.1765 without restraints) Performing minimization step: 52. Total energy = 99605.0093 kcal/mol (99474.1791 without restraints) Performing minimization step: 53. Total energy = 98587.6550 kcal/mol (98459.0271 without restraints) Performing minimization step: 54. Total energy = 97588.7208 kcal/mol (97462.2390 without restraints) Performing minimization step: 55. Total energy = 96607.7407 kcal/mol (96483.3515 without restraints) Performing minimization step: 56. Total energy = 95644.2670 kcal/mol (95521.9183 without restraints) Performing minimization step: 57. Total energy = 94697.8679 kcal/mol (94577.5096 without restraints) Performing minimization step: 58. Total energy = 93768.1267 kcal/mol (93649.7106 without restraints) Performing minimization step: 59. Total energy = 92854.6423 kcal/mol (92738.1218 without restraints) Performing minimization step: 60. Total energy = 91957.0269 kcal/mol (91842.3572 without restraints) Performing minimization step: 61. Total energy = 91074.9063 kcal/mol (90962.0439 without restraints) Performing minimization step: 62. Total energy = 90207.9189 kcal/mol (90096.8218 without restraints) Performing minimization step: 63. Total energy = 89355.7153 kcal/mol (89246.3430 without restraints) Performing minimization step: 64. Total energy = 88517.9570 kcal/mol (88410.2703 without restraints) Performing minimization step: 65. Total energy = 87694.3171 kcal/mol (87588.2779 without restraints) Performing minimization step: 66. Total energy = 86884.4791 kcal/mol (86780.0506 without restraints) Performing minimization step: 67. Total energy = 86088.1358 kcal/mol (85985.2825 without restraints) Performing minimization step: 68. Total energy = 85304.9904 kcal/mol (85203.6777 without restraints) Performing minimization step: 69. Total energy = 84534.7547 kcal/mol (84434.9491 without restraints) Performing minimization step: 70. Total energy = 83777.1493 kcal/mol (83678.8184 without restraints) Performing minimization step: 71. Total energy = 83031.9034 kcal/mol (82935.0156 without restraints) Performing minimization step: 72. Total energy = 82298.7540 kcal/mol (82203.2787 without restraints) Performing minimization step: 73. Total energy = 81577.4453 kcal/mol (81483.3530 without restraints) Performing minimization step: 74. Total energy = 80867.7297 kcal/mol (80774.9914 without restraints) Performing minimization step: 75. Total energy = 80169.3661 kcal/mol (80077.9538 without restraints) Performing minimization step: 76. Total energy = 79482.1204 kcal/mol (79392.0068 without restraints) Performing minimization step: 77. Total energy = 78805.7651 kcal/mol (78716.9236 without restraints) Performing minimization step: 78. Total energy = 78140.0780 kcal/mol (78052.4830 without restraints) Performing minimization step: 79. Total energy = 77484.8444 kcal/mol (77398.4707 without restraints) Performing minimization step: 80. Total energy = 76839.8546 kcal/mol (76754.6780 without restraints) Performing minimization step: 81. Total energy = 76204.9046 kcal/mol (76120.9012 without restraints) Performing minimization step: 82. Total energy = 75579.7955 kcal/mol (75496.9422 without restraints) Performing minimization step: 83. Total energy = 74964.3340 kcal/mol (74882.6082 without restraints) Performing minimization step: 84. Total energy = 74358.3315 kcal/mol (74277.7112 without restraints) Performing minimization step: 85. Total energy = 73761.6042 kcal/mol (73682.0681 without restraints) Performing minimization step: 86. Total energy = 73173.9731 kcal/mol (73095.5003 without restraints) Performing minimization step: 87. Total energy = 72595.2635 kcal/mol (72517.8335 without restraints) Performing minimization step: 88. Total energy = 72025.3053 kcal/mol (71948.8985 without restraints) Performing minimization step: 89. Total energy = 71463.9326 kcal/mol (71388.5296 without restraints) Performing minimization step: 90. Total energy = 70910.9828 kcal/mol (70836.5646 without restraints) Performing minimization step: 91. Total energy = 70366.2981 kcal/mol (70292.8463 without restraints) Performing minimization step: 92. Total energy = 69829.7244 kcal/mol (69757.2210 without restraints) Performing minimization step: 93. Total energy = 69301.1107 kcal/mol (69229.5382 without restraints) Performing minimization step: 94. Total energy = 68780.3100 kcal/mol (68709.6512 without restraints) Performing minimization step: 95. Total energy = 68267.1786 kcal/mol (68197.4166 without restraints) Performing minimization step: 96. Total energy = 67761.5760 kcal/mol (67692.6946 without restraints) Performing minimization step: 97. Total energy = 67263.3651 kcal/mol (67195.3481 without restraints) Performing minimization step: 98. Total energy = 66772.4118 kcal/mol (66705.2438 without restraints) Performing minimization step: 99. Total energy = 66288.5853 kcal/mol (66222.2509 without restraints) Performing minimization step: 100. Total energy = 65811.7574 kcal/mol (65746.2417 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 101. Total energy = 65341.8028 kcal/mol (65277.0910 without restraints) Performing minimization step: 102. Total energy = 64878.5992 kcal/mol (64814.6773 without restraints) Performing minimization step: 103. Total energy = 64422.0269 kcal/mol (64358.8808 without restraints) Performing minimization step: 104. Total energy = 63971.9687 kcal/mol (63909.5847 without restraints) Performing minimization step: 105. Total energy = 63528.3100 kcal/mol (63466.6747 without restraints) Performing minimization step: 106. Total energy = 63090.9387 kcal/mol (63030.0391 without restraints) Performing minimization step: 107. Total energy = 62659.7450 kcal/mol (62599.5681 without restraints) Performing minimization step: 108. Total energy = 62234.6212 kcal/mol (62175.1546 without restraints) Performing minimization step: 109. Total energy = 61815.4627 kcal/mol (61756.6941 without restraints) Performing minimization step: 110. Total energy = 61402.1665 kcal/mol (61344.0840 without restraints) Performing minimization step: 111. Total energy = 60994.6315 kcal/mol (60937.2231 without restraints) Performing minimization step: 112. Total energy = 60592.7591 kcal/mol (60536.0134 without restraints) Performing minimization step: 113. Total energy = 60196.4527 kcal/mol (60140.3584 without restraints) Performing minimization step: 114. Total energy = 59805.6175 kcal/mol (59750.1636 without restraints) Performing minimization step: 115. Total energy = 59420.1609 kcal/mol (59365.3364 without restraints) Performing minimization step: 116. Total energy = 59039.9920 kcal/mol (58985.7864 without restraints) Performing minimization step: 117. Total energy = 58665.0217 kcal/mol (58611.4246 without restraints) Performing minimization step: 118. Total energy = 58295.1627 kcal/mol (58242.1638 without restraints) Performing minimization step: 119. Total energy = 57930.3295 kcal/mol (57877.9189 without restraints) Performing minimization step: 120. Total energy = 57570.4383 kcal/mol (57518.6063 without restraints) Performing minimization step: 121. Total energy = 57215.4070 kcal/mol (57164.1438 without restraints) Performing minimization step: 122. Total energy = 56865.1549 kcal/mol (56814.4512 without restraints) Performing minimization step: 123. Total energy = 56519.6031 kcal/mol (56469.4496 without restraints) Performing minimization step: 124. Total energy = 56178.6737 kcal/mol (56129.0614 without restraints) Performing minimization step: 125. Total energy = 55842.2914 kcal/mol (55793.2114 without restraints) Performing minimization step: 126. Total energy = 55510.3817 kcal/mol (55461.8253 without restraints) Performing minimization step: 127. Total energy = 55182.8714 kcal/mol (55134.8301 without restraints) Performing minimization step: 128. Total energy = 54859.6890 kcal/mol (54812.1544 without restraints) Performing minimization step: 129. Total energy = 54540.7637 kcal/mol (54493.7276 without restraints) Performing minimization step: 130. Total energy = 54226.0270 kcal/mol (54179.4813 without restraints) Performing minimization step: 131. Total energy = 53915.4109 kcal/mol (53869.3478 without restraints) Performing minimization step: 132. Total energy = 53608.8492 kcal/mol (53563.2608 without restraints) Performing minimization step: 133. Total energy = 53306.2769 kcal/mol (53261.1556 without restraints) Performing minimization step: 134. Total energy = 53007.6300 kcal/mol (52962.9683 without restraints) Performing minimization step: 135. Total energy = 52712.8453 kcal/mol (52668.6359 without restraints) Performing minimization step: 136. Total energy = 52421.8615 kcal/mol (52378.0972 without restraints) Performing minimization step: 137. Total energy = 52134.6181 kcal/mol (52091.2919 without restraints) Performing minimization step: 138. Total energy = 51851.0556 kcal/mol (51808.1604 without restraints) Performing minimization step: 139. Total energy = 51571.1163 kcal/mol (51528.6455 without restraints) Performing minimization step: 140. Total energy = 51294.7430 kcal/mol (51252.6898 without restraints) Performing minimization step: 141. Total energy = 51021.8788 kcal/mol (50980.2366 without restraints) Performing minimization step: 142. Total energy = 50752.4689 kcal/mol (50711.2312 without restraints) Performing minimization step: 143. Total energy = 50486.4588 kcal/mol (50445.6194 without restraints) Performing minimization step: 144. Total energy = 50223.7956 kcal/mol (50183.3482 without restraints) Performing minimization step: 145. Total energy = 49964.4268 kcal/mol (49924.3654 without restraints) Performing minimization step: 146. Total energy = 49708.3014 kcal/mol (49668.6199 without restraints) Performing minimization step: 147. Total energy = 49455.3693 kcal/mol (49416.0617 without restraints) Performing minimization step: 148. Total energy = 49205.5805 kcal/mol (49166.6411 without restraints) Performing minimization step: 149. Total energy = 48958.8863 kcal/mol (48920.3095 without restraints) Performing minimization step: 150. Total energy = 48715.2394 kcal/mol (48677.0195 without restraints) Performing minimization step: 151. Total energy = 48474.5926 kcal/mol (48436.7241 without restraints) Performing minimization step: 152. Total energy = 48236.8998 kcal/mol (48199.3774 without restraints) Performing minimization step: 153. Total energy = 48002.1158 kcal/mol (47964.9342 without restraints) Performing minimization step: 154. Total energy = 47770.1959 kcal/mol (47733.3498 without restraints) Performing minimization step: 155. Total energy = 47541.0962 kcal/mol (47504.5806 without restraints) Performing minimization step: 156. Total energy = 47314.7739 kcal/mol (47278.5837 without restraints) Performing minimization step: 157. Total energy = 47091.1870 kcal/mol (47055.3172 without restraints) Performing minimization step: 158. Total energy = 46870.2944 kcal/mol (46834.7402 without restraints) Performing minimization step: 159. Total energy = 46652.0536 kcal/mol (46616.8102 without restraints) Performing minimization step: 160. Total energy = 46436.4251 kcal/mol (46401.4879 without restraints) Performing minimization step: 161. Total energy = 46223.3702 kcal/mol (46188.7345 without restraints) Performing minimization step: 162. Total energy = 46012.8497 kcal/mol (45978.5110 without restraints) Performing minimization step: 163. Total energy = 45804.8254 kcal/mol (45770.7791 without restraints) Performing minimization step: 164. Total energy = 45599.2601 kcal/mol (45565.5020 without restraints) Performing minimization step: 165. Total energy = 45396.1168 kcal/mol (45362.6425 without restraints) Performing minimization step: 166. Total energy = 45195.3591 kcal/mol (45162.1644 without restraints) Performing minimization step: 167. Total energy = 44996.9519 kcal/mol (44964.0326 without restraints) Performing minimization step: 168. Total energy = 44800.8597 kcal/mol (44768.2118 without restraints) Performing minimization step: 169. Total energy = 44607.0484 kcal/mol (44574.6677 without restraints) Performing minimization step: 170. Total energy = 44415.4842 kcal/mol (44383.3668 without restraints) Performing minimization step: 171. Total energy = 44226.1333 kcal/mol (44194.2753 without restraints) Performing minimization step: 172. Total energy = 44038.9632 kcal/mol (44007.3609 without restraints) Performing minimization step: 173. Total energy = 43853.9418 kcal/mol (43822.5914 without restraints) Performing minimization step: 174. Total energy = 43671.0372 kcal/mol (43639.9349 without restraints) Performing minimization step: 175. Total energy = 43490.2185 kcal/mol (43459.3606 without restraints) Performing minimization step: 176. Total energy = 43311.4551 kcal/mol (43280.8381 without restraints) Performing minimization step: 177. Total energy = 43134.7167 kcal/mol (43104.3371 without restraints) Performing minimization step: 178. Total energy = 42959.9737 kcal/mol (42929.8281 without restraints) Performing minimization step: 179. Total energy = 42787.1970 kcal/mol (42757.2818 without restraints) Performing minimization step: 180. Total energy = 42616.3579 kcal/mol (42586.6698 without restraints) Performing minimization step: 181. Total energy = 42447.4281 kcal/mol (42417.9638 without restraints) Performing minimization step: 182. Total energy = 42280.3798 kcal/mol (42251.1362 without restraints) Performing minimization step: 183. Total energy = 42115.1858 kcal/mol (42086.1595 without restraints) Performing minimization step: 184. Total energy = 41951.8191 kcal/mol (41923.0071 without restraints) Performing minimization step: 185. Total energy = 41790.2534 kcal/mol (41761.6525 without restraints) Performing minimization step: 186. Total energy = 41630.4628 kcal/mol (41602.0700 without restraints) Performing minimization step: 187. Total energy = 41472.4213 kcal/mol (41444.2335 without restraints) Performing minimization step: 188. Total energy = 41316.1036 kcal/mol (41288.1180 without restraints) Performing minimization step: 189. Total energy = 41161.4854 kcal/mol (41133.6991 without restraints) Performing minimization step: 190. Total energy = 41008.5418 kcal/mol (40980.9519 without restraints) Performing minimization step: 191. Total energy = 40857.2490 kcal/mol (40829.8527 without restraints) Performing minimization step: 192. Total energy = 40707.5841 kcal/mol (40680.3786 without restraints) Performing minimization step: 193. Total energy = 40559.5231 kcal/mol (40532.5056 without restraints) Performing minimization step: 194. Total energy = 40413.0432 kcal/mol (40386.2111 without restraints) Performing minimization step: 195. Total energy = 40268.1215 kcal/mol (40241.4723 without restraints) Performing minimization step: 196. Total energy = 40124.7366 kcal/mol (40098.2675 without restraints) Performing minimization step: 197. Total energy = 39982.8661 kcal/mol (39956.5747 without restraints) Performing minimization step: 198. Total energy = 39842.4889 kcal/mol (39816.3725 without restraints) Performing minimization step: 199. Total energy = 39703.5835 kcal/mol (39677.6398 without restraints) Performing minimization step: 200. Total energy = 39566.1293 kcal/mol (39540.3559 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 201. Total energy = 39430.1056 kcal/mol (39404.5000 without restraints) Performing minimization step: 202. Total energy = 39295.4925 kcal/mol (39270.0523 without restraints) Performing minimization step: 203. Total energy = 39162.2700 kcal/mol (39136.9928 without restraints) Performing minimization step: 204. Total energy = 39030.4185 kcal/mol (39005.3022 without restraints) Performing minimization step: 205. Total energy = 38899.9185 kcal/mol (38874.9608 without restraints) Performing minimization step: 206. Total energy = 38770.7516 kcal/mol (38745.9503 without restraints) Performing minimization step: 207. Total energy = 38642.8986 kcal/mol (38618.2514 without restraints) Performing minimization step: 208. Total energy = 38516.3412 kcal/mol (38491.8460 without restraints) Performing minimization step: 209. Total energy = 38391.0619 kcal/mol (38366.7166 without restraints) Performing minimization step: 210. Total energy = 38267.0424 kcal/mol (38242.8448 without restraints) Performing minimization step: 211. Total energy = 38144.2651 kcal/mol (38120.2134 without restraints) Performing minimization step: 212. Total energy = 38022.7131 kcal/mol (37998.8051 without restraints) Performing minimization step: 213. Total energy = 37902.3691 kcal/mol (37878.6030 without restraints) Performing minimization step: 214. Total energy = 37783.2165 kcal/mol (37759.5901 without restraints) Performing minimization step: 215. Total energy = 37665.2387 kcal/mol (37641.7502 without restraints) Performing minimization step: 216. Total energy = 37548.4194 kcal/mol (37525.0668 without restraints) Performing minimization step: 217. Total energy = 37432.7426 kcal/mol (37409.5241 without restraints) Performing minimization step: 218. Total energy = 37318.1924 kcal/mol (37295.1062 without restraints) Performing minimization step: 219. Total energy = 37204.7539 kcal/mol (37181.7981 without restraints) Performing minimization step: 220. Total energy = 37092.4113 kcal/mol (37069.5841 without restraints) Performing minimization step: 221. Total energy = 36981.1494 kcal/mol (36958.4491 without restraints) Performing minimization step: 222. Total energy = 36870.9537 kcal/mol (36848.3785 without restraints) Performing minimization step: 223. Total energy = 36761.8094 kcal/mol (36739.3576 without restraints) Performing minimization step: 224. Total energy = 36653.7025 kcal/mol (36631.3725 without restraints) Performing minimization step: 225. Total energy = 36546.6184 kcal/mol (36524.4085 without restraints) Performing minimization step: 226. Total energy = 36440.5431 kcal/mol (36418.4515 without restraints) Performing minimization step: 227. Total energy = 36335.4629 kcal/mol (36313.4883 without restraints) Performing minimization step: 228. Total energy = 36231.3646 kcal/mol (36209.5052 without restraints) Performing minimization step: 229. Total energy = 36128.2346 kcal/mol (36106.4888 without restraints) Performing minimization step: 230. Total energy = 36026.0596 kcal/mol (36004.4261 without restraints) Performing minimization step: 231. Total energy = 35924.8270 kcal/mol (35903.3041 without restraints) Performing minimization step: 232. Total energy = 35824.5237 kcal/mol (35803.1100 without restraints) Performing minimization step: 233. Total energy = 35725.1375 kcal/mol (35703.8315 without restraints) Performing minimization step: 234. Total energy = 35626.6558 kcal/mol (35605.4560 without restraints) Performing minimization step: 235. Total energy = 35529.0666 kcal/mol (35507.9716 without restraints) Performing minimization step: 236. Total energy = 35432.3576 kcal/mol (35411.3660 without restraints) Performing minimization step: 237. Total energy = 35336.5172 kcal/mol (35315.6276 without restraints) Performing minimization step: 238. Total energy = 35241.5337 kcal/mol (35220.7448 without restraints) Performing minimization step: 239. Total energy = 35147.3951 kcal/mol (35126.7055 without restraints) Performing minimization step: 240. Total energy = 35054.0907 kcal/mol (35033.4990 without restraints) Performing minimization step: 241. Total energy = 34961.6095 kcal/mol (34941.1145 without restraints) Performing minimization step: 242. Total energy = 34869.9397 kcal/mol (34849.5401 without restraints) Performing minimization step: 243. Total energy = 34779.0710 kcal/mol (34758.7655 without restraints) Performing minimization step: 244. Total energy = 34688.9926 kcal/mol (34668.7800 without restraints) Performing minimization step: 245. Total energy = 34599.6945 kcal/mol (34579.5735 without restraints) Performing minimization step: 246. Total energy = 34511.1654 kcal/mol (34491.1348 without restraints) Performing minimization step: 247. Total energy = 34423.3951 kcal/mol (34403.4538 without restraints) Performing minimization step: 248. Total energy = 34336.3747 kcal/mol (34316.5214 without restraints) Performing minimization step: 249. Total energy = 34250.0933 kcal/mol (34230.3269 without restraints) Performing minimization step: 250. Total energy = 34164.5414 kcal/mol (34144.8608 without restraints) Performing minimization step: 251. Total energy = 34079.7093 kcal/mol (34060.1133 without restraints) Performing minimization step: 252. Total energy = 33995.5877 kcal/mol (33976.0753 without restraints) Performing minimization step: 253. Total energy = 33912.1671 kcal/mol (33892.7371 without restraints) Performing minimization step: 254. Total energy = 33829.4383 kcal/mol (33810.0896 without restraints) Performing minimization step: 255. Total energy = 33747.3921 kcal/mol (33728.1237 without restraints) Performing minimization step: 256. Total energy = 33666.0200 kcal/mol (33646.8307 without restraints) Performing minimization step: 257. Total energy = 33585.3132 kcal/mol (33566.2022 without restraints) Performing minimization step: 258. Total energy = 33505.2619 kcal/mol (33486.2281 without restraints) Performing minimization step: 259. Total energy = 33425.8582 kcal/mol (33406.9006 without restraints) Performing minimization step: 260. Total energy = 33347.0942 kcal/mol (33328.2118 without restraints) Performing minimization step: 261. Total energy = 33268.9614 kcal/mol (33250.1532 without restraints) Performing minimization step: 262. Total energy = 33191.4511 kcal/mol (33172.7162 without restraints) Performing minimization step: 263. Total energy = 33114.5558 kcal/mol (33095.8932 without restraints) Performing minimization step: 264. Total energy = 33038.2669 kcal/mol (33019.6757 without restraints) Performing minimization step: 265. Total energy = 32962.5769 kcal/mol (32944.0562 without restraints) Performing minimization step: 266. Total energy = 32887.4782 kcal/mol (32869.0270 without restraints) Performing minimization step: 267. Total energy = 32812.9629 kcal/mol (32794.5805 without restraints) Performing minimization step: 268. Total energy = 32739.0240 kcal/mol (32720.7093 without restraints) Performing minimization step: 269. Total energy = 32665.6531 kcal/mol (32647.4053 without restraints) Performing minimization step: 270. Total energy = 32592.8437 kcal/mol (32574.6620 without restraints) Performing minimization step: 271. Total energy = 32520.5881 kcal/mol (32502.4717 without restraints) Performing minimization step: 272. Total energy = 32448.8799 kcal/mol (32430.8279 without restraints) Performing minimization step: 273. Total energy = 32377.7115 kcal/mol (32359.7231 without restraints) Performing minimization step: 274. Total energy = 32307.0764 kcal/mol (32289.1508 without restraints) Performing minimization step: 275. Total energy = 32236.9676 kcal/mol (32219.1040 without restraints) Performing minimization step: 276. Total energy = 32167.3783 kcal/mol (32149.5759 without restraints) Performing minimization step: 277. Total energy = 32098.3022 kcal/mol (32080.5603 without restraints) Performing minimization step: 278. Total energy = 32029.7329 kcal/mol (32012.0507 without restraints) Performing minimization step: 279. Total energy = 31961.6643 kcal/mol (31944.0411 without restraints) Performing minimization step: 280. Total energy = 31894.0890 kcal/mol (31876.5238 without restraints) Performing minimization step: 281. Total energy = 31827.0011 kcal/mol (31809.4934 without restraints) Performing minimization step: 282. Total energy = 31760.3948 kcal/mol (31742.9438 without restraints) Performing minimization step: 283. Total energy = 31694.2638 kcal/mol (31676.8688 without restraints) Performing minimization step: 284. Total energy = 31628.6022 kcal/mol (31611.2627 without restraints) Performing minimization step: 285. Total energy = 31563.4048 kcal/mol (31546.1203 without restraints) Performing minimization step: 286. Total energy = 31498.6651 kcal/mol (31481.4342 without restraints) Performing minimization step: 287. Total energy = 31434.3771 kcal/mol (31417.1994 without restraints) Performing minimization step: 288. Total energy = 31370.5355 kcal/mol (31353.4106 without restraints) Performing minimization step: 289. Total energy = 31307.1352 kcal/mol (31290.0623 without restraints) Performing minimization step: 290. Total energy = 31244.1702 kcal/mol (31227.1487 without restraints) Performing minimization step: 291. Total energy = 31181.6349 kcal/mol (31164.6640 without restraints) Performing minimization step: 292. Total energy = 31119.5250 kcal/mol (31102.6043 without restraints) Performing minimization step: 293. Total energy = 31057.8340 kcal/mol (31040.9629 without restraints) Performing minimization step: 294. Total energy = 30996.5577 kcal/mol (30979.7355 without restraints) Performing minimization step: 295. Total energy = 30935.6906 kcal/mol (30918.9166 without restraints) Performing minimization step: 296. Total energy = 30875.2275 kcal/mol (30858.5013 without restraints) Performing minimization step: 297. Total energy = 30815.1643 kcal/mol (30798.4853 without restraints) Performing minimization step: 298. Total energy = 30755.4953 kcal/mol (30738.8630 without restraints) Performing minimization step: 299. Total energy = 30696.2163 kcal/mol (30679.6298 without restraints) Performing minimization step: 300. Total energy = 30637.3220 kcal/mol (30620.7811 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 301. Total energy = 30578.8081 kcal/mol (30562.3120 without restraints) Performing minimization step: 302. Total energy = 30520.6695 kcal/mol (30504.2179 without restraints) Performing minimization step: 303. Total energy = 30462.9025 kcal/mol (30446.4948 without restraints) Performing minimization step: 304. Total energy = 30405.5017 kcal/mol (30389.1373 without restraints) Performing minimization step: 305. Total energy = 30348.4635 kcal/mol (30332.1420 without restraints) Performing minimization step: 306. Total energy = 30291.7830 kcal/mol (30275.5037 without restraints) Performing minimization step: 307. Total energy = 30235.4559 kcal/mol (30219.2184 without restraints) Performing minimization step: 308. Total energy = 30179.4780 kcal/mol (30163.2819 without restraints) Performing minimization step: 309. Total energy = 30123.8455 kcal/mol (30107.6902 without restraints) Performing minimization step: 310. Total energy = 30068.5543 kcal/mol (30052.4392 without restraints) Performing minimization step: 311. Total energy = 30013.6002 kcal/mol (29997.5253 without restraints) Performing minimization step: 312. Total energy = 29958.9793 kcal/mol (29942.9436 without restraints) Performing minimization step: 313. Total energy = 29904.6878 kcal/mol (29888.6912 without restraints) Performing minimization step: 314. Total energy = 29850.7210 kcal/mol (29834.7629 without restraints) Performing minimization step: 315. Total energy = 29797.0759 kcal/mol (29781.1558 without restraints) Performing minimization step: 316. Total energy = 29743.7485 kcal/mol (29727.8660 without restraints) Performing minimization step: 317. Total energy = 29690.7352 kcal/mol (29674.8899 without restraints) Performing minimization step: 318. Total energy = 29638.0322 kcal/mol (29622.2237 without restraints) Performing minimization step: 319. Total energy = 29585.6359 kcal/mol (29569.8638 without restraints) Performing minimization step: 320. Total energy = 29533.5428 kcal/mol (29517.8066 without restraints) Performing minimization step: 321. Total energy = 29481.7492 kcal/mol (29466.0485 without restraints) Performing minimization step: 322. Total energy = 29430.2518 kcal/mol (29414.5863 without restraints) Performing minimization step: 323. Total energy = 29379.0477 kcal/mol (29363.4169 without restraints) Performing minimization step: 324. Total energy = 29328.1329 kcal/mol (29312.5365 without restraints) Performing minimization step: 325. Total energy = 29277.5044 kcal/mol (29261.9418 without restraints) Performing minimization step: 326. Total energy = 29227.1588 kcal/mol (29211.6300 without restraints) Performing minimization step: 327. Total energy = 29177.0929 kcal/mol (29161.5972 without restraints) Performing minimization step: 328. Total energy = 29127.3036 kcal/mol (29111.8406 without restraints) Performing minimization step: 329. Total energy = 29077.7872 kcal/mol (29062.3567 without restraints) Performing minimization step: 330. Total energy = 29028.5416 kcal/mol (29013.1432 without restraints) Performing minimization step: 331. Total energy = 28979.5628 kcal/mol (28964.1959 without restraints) Performing minimization step: 332. Total energy = 28930.8486 kcal/mol (28915.5135 without restraints) Performing minimization step: 333. Total energy = 28882.3966 kcal/mol (28867.0927 without restraints) Performing minimization step: 334. Total energy = 28834.2028 kcal/mol (28818.9294 without restraints) Performing minimization step: 335. Total energy = 28786.2642 kcal/mol (28771.0211 without restraints) Performing minimization step: 336. Total energy = 28738.5783 kcal/mol (28723.3653 without restraints) Performing minimization step: 337. Total energy = 28691.1426 kcal/mol (28675.9594 without restraints) Performing minimization step: 338. Total energy = 28643.9539 kcal/mol (28628.8001 without restraints) Performing minimization step: 339. Total energy = 28597.0095 kcal/mol (28581.8848 without restraints) Performing minimization step: 340. Total energy = 28550.3073 kcal/mol (28535.2113 without restraints) Performing minimization step: 341. Total energy = 28503.8443 kcal/mol (28488.7768 without restraints) Performing minimization step: 342. Total energy = 28457.6179 kcal/mol (28442.5787 without restraints) Performing minimization step: 343. Total energy = 28411.6253 kcal/mol (28396.6139 without restraints) Performing minimization step: 344. Total energy = 28365.8645 kcal/mol (28350.8806 without restraints) Performing minimization step: 345. Total energy = 28320.3326 kcal/mol (28305.3760 without restraints) Performing minimization step: 346. Total energy = 28275.0270 kcal/mol (28260.0975 without restraints) Performing minimization step: 347. Total energy = 28229.9462 kcal/mol (28215.0435 without restraints) Performing minimization step: 348. Total energy = 28185.0871 kcal/mol (28170.2107 without restraints) Performing minimization step: 349. Total energy = 28140.4473 kcal/mol (28125.5971 without restraints) Performing minimization step: 350. Total energy = 28096.0243 kcal/mol (28081.2001 without restraints) Performing minimization step: 351. Total energy = 28051.8164 kcal/mol (28037.0178 without restraints) Performing minimization step: 352. Total energy = 28007.8212 kcal/mol (27993.0480 without restraints) Performing minimization step: 353. Total energy = 27964.0363 kcal/mol (27949.2882 without restraints) Performing minimization step: 354. Total energy = 27920.4593 kcal/mol (27905.7361 without restraints) Performing minimization step: 355. Total energy = 27877.0889 kcal/mol (27862.3903 without restraints) Performing minimization step: 356. Total energy = 27833.9226 kcal/mol (27819.2484 without restraints) Performing minimization step: 357. Total energy = 27790.9576 kcal/mol (27776.3074 without restraints) Performing minimization step: 358. Total energy = 27748.1919 kcal/mol (27733.5658 without restraints) Performing minimization step: 359. Total energy = 27705.6247 kcal/mol (27691.0221 without restraints) Performing minimization step: 360. Total energy = 27663.2528 kcal/mol (27648.6737 without restraints) Performing minimization step: 361. Total energy = 27621.0751 kcal/mol (27606.5191 without restraints) Performing minimization step: 362. Total energy = 27579.0886 kcal/mol (27564.5556 without restraints) Performing minimization step: 363. Total energy = 27537.2924 kcal/mol (27522.7821 without restraints) Performing minimization step: 364. Total energy = 27495.6839 kcal/mol (27481.1962 without restraints) Performing minimization step: 365. Total energy = 27454.2616 kcal/mol (27439.7961 without restraints) Performing minimization step: 366. Total energy = 27413.0234 kcal/mol (27398.5800 without restraints) Performing minimization step: 367. Total energy = 27371.9679 kcal/mol (27357.5465 without restraints) Performing minimization step: 368. Total energy = 27331.0927 kcal/mol (27316.6929 without restraints) Performing minimization step: 369. Total energy = 27290.3960 kcal/mol (27276.0175 without restraints) Performing minimization step: 370. Total energy = 27249.8765 kcal/mol (27235.5194 without restraints) Performing minimization step: 371. Total energy = 27209.5325 kcal/mol (27195.1964 without restraints) Performing minimization step: 372. Total energy = 27169.3624 kcal/mol (27155.0471 without restraints) Performing minimization step: 373. Total energy = 27129.3639 kcal/mol (27115.0694 without restraints) Performing minimization step: 374. Total energy = 27089.5358 kcal/mol (27075.2618 without restraints) Performing minimization step: 375. Total energy = 27049.8765 kcal/mol (27035.6228 without restraints) Performing minimization step: 376. Total energy = 27010.3840 kcal/mol (26996.1503 without restraints) Performing minimization step: 377. Total energy = 26971.0574 kcal/mol (26956.8436 without restraints) Performing minimization step: 378. Total energy = 26931.8943 kcal/mol (26917.7002 without restraints) Performing minimization step: 379. Total energy = 26892.8937 kcal/mol (26878.7192 without restraints) Performing minimization step: 380. Total energy = 26854.0540 kcal/mol (26839.8989 without restraints) Performing minimization step: 381. Total energy = 26815.3738 kcal/mol (26801.2378 without restraints) Performing minimization step: 382. Total energy = 26776.8513 kcal/mol (26762.7344 without restraints) Performing minimization step: 383. Total energy = 26738.4853 kcal/mol (26724.3873 without restraints) Performing minimization step: 384. Total energy = 26700.2743 kcal/mol (26686.1949 without restraints) Performing minimization step: 385. Total energy = 26662.2168 kcal/mol (26648.1560 without restraints) Performing minimization step: 386. Total energy = 26624.3116 kcal/mol (26610.2692 without restraints) Performing minimization step: 387. Total energy = 26586.5572 kcal/mol (26572.5329 without restraints) Performing minimization step: 388. Total energy = 26548.9521 kcal/mol (26534.9458 without restraints) Performing minimization step: 389. Total energy = 26511.4946 kcal/mol (26497.5062 without restraints) Performing minimization step: 390. Total energy = 26474.1841 kcal/mol (26460.2133 without restraints) Performing minimization step: 391. Total energy = 26437.0191 kcal/mol (26423.0661 without restraints) Performing minimization step: 392. Total energy = 26399.9987 kcal/mol (26386.0632 without restraints) Performing minimization step: 393. Total energy = 26363.1209 kcal/mol (26349.2026 without restraints) Performing minimization step: 394. Total energy = 26326.3845 kcal/mol (26312.4833 without restraints) Performing minimization step: 395. Total energy = 26289.7887 kcal/mol (26275.9046 without restraints) Performing minimization step: 396. Total energy = 26253.3321 kcal/mol (26239.4648 without restraints) Performing minimization step: 397. Total energy = 26217.0134 kcal/mol (26203.1628 without restraints) Performing minimization step: 398. Total energy = 26180.8317 kcal/mol (26166.9977 without restraints) Performing minimization step: 399. Total energy = 26144.7850 kcal/mol (26130.9675 without restraints) Performing minimization step: 400. Total energy = 26108.8738 kcal/mol (26095.0726 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 401. Total energy = 26073.0954 kcal/mol (26059.3104 without restraints) Performing minimization step: 402. Total energy = 26037.4488 kcal/mol (26023.6799 without restraints) Performing minimization step: 403. Total energy = 26001.9336 kcal/mol (25988.1805 without restraints) Performing minimization step: 404. Total energy = 25966.5478 kcal/mol (25952.8105 without restraints) Performing minimization step: 405. Total energy = 25931.2913 kcal/mol (25917.5696 without restraints) Performing minimization step: 406. Total energy = 25896.1630 kcal/mol (25882.4569 without restraints) Performing minimization step: 407. Total energy = 25861.1611 kcal/mol (25847.4704 without restraints) Performing minimization step: 408. Total energy = 25826.2849 kcal/mol (25812.6096 without restraints) Performing minimization step: 409. Total energy = 25791.5334 kcal/mol (25777.8732 without restraints) Performing minimization step: 410. Total energy = 25756.9054 kcal/mol (25743.2603 without restraints) Performing minimization step: 411. Total energy = 25722.4004 kcal/mol (25708.7703 without restraints) Performing minimization step: 412. Total energy = 25688.0165 kcal/mol (25674.4012 without restraints) Performing minimization step: 413. Total energy = 25653.7540 kcal/mol (25640.1534 without restraints) Performing minimization step: 414. Total energy = 25619.6109 kcal/mol (25606.0250 without restraints) Performing minimization step: 415. Total energy = 25585.5867 kcal/mol (25572.0153 without restraints) Performing minimization step: 416. Total energy = 25551.6806 kcal/mol (25538.1235 without restraints) Performing minimization step: 417. Total energy = 25517.8914 kcal/mol (25504.3486 without restraints) Performing minimization step: 418. Total energy = 25484.2178 kcal/mol (25470.6892 without restraints) Performing minimization step: 419. Total energy = 25450.6595 kcal/mol (25437.1450 without restraints) Performing minimization step: 420. Total energy = 25417.2148 kcal/mol (25403.7142 without restraints) Performing minimization step: 421. Total energy = 25383.8837 kcal/mol (25370.3970 without restraints) Performing minimization step: 422. Total energy = 25350.6662 kcal/mol (25337.1933 without restraints) Performing minimization step: 423. Total energy = 25317.5600 kcal/mol (25304.1008 without restraints) Performing minimization step: 424. Total energy = 25284.5643 kcal/mol (25271.1187 without restraints) Performing minimization step: 425. Total energy = 25251.6784 kcal/mol (25238.2462 without restraints) Performing minimization step: 426. Total energy = 25218.9018 kcal/mol (25205.4830 without restraints) Performing minimization step: 427. Total energy = 25186.2334 kcal/mol (25172.8280 without restraints) Performing minimization step: 428. Total energy = 25153.6727 kcal/mol (25140.2805 without restraints) Performing minimization step: 429. Total energy = 25121.2188 kcal/mol (25107.8397 without restraints) Performing minimization step: 430. Total energy = 25088.8710 kcal/mol (25075.5049 without restraints) Performing minimization step: 431. Total energy = 25056.6281 kcal/mol (25043.2748 without restraints) Performing minimization step: 432. Total energy = 25024.4894 kcal/mol (25011.1490 without restraints) Performing minimization step: 433. Total energy = 24992.4546 kcal/mol (24979.1271 without restraints) Performing minimization step: 434. Total energy = 24960.5230 kcal/mol (24947.2082 without restraints) Performing minimization step: 435. Total energy = 24928.6933 kcal/mol (24915.3909 without restraints) Performing minimization step: 436. Total energy = 24896.9643 kcal/mol (24883.6746 without restraints) Performing minimization step: 437. Total energy = 24865.3371 kcal/mol (24852.0598 without restraints) Performing minimization step: 438. Total energy = 24833.8098 kcal/mol (24820.5448 without restraints) Performing minimization step: 439. Total energy = 24802.3819 kcal/mol (24789.1293 without restraints) Performing minimization step: 440. Total energy = 24771.0527 kcal/mol (24757.8121 without restraints) Performing minimization step: 441. Total energy = 24739.8214 kcal/mol (24726.5930 without restraints) Performing minimization step: 442. Total energy = 24708.6877 kcal/mol (24695.4713 without restraints) Performing minimization step: 443. Total energy = 24677.6497 kcal/mol (24664.4453 without restraints) Performing minimization step: 444. Total energy = 24646.7091 kcal/mol (24633.5165 without restraints) Performing minimization step: 445. Total energy = 24615.8632 kcal/mol (24602.6824 without restraints) Performing minimization step: 446. Total energy = 24585.1121 kcal/mol (24571.9431 without restraints) Performing minimization step: 447. Total energy = 24554.4547 kcal/mol (24541.2974 without restraints) Performing minimization step: 448. Total energy = 24523.8908 kcal/mol (24510.7450 without restraints) Performing minimization step: 449. Total energy = 24493.4198 kcal/mol (24480.2854 without restraints) Performing minimization step: 450. Total energy = 24463.0410 kcal/mol (24449.9181 without restraints) Performing minimization step: 451. Total energy = 24432.7536 kcal/mol (24419.6422 without restraints) Performing minimization step: 452. Total energy = 24402.5577 kcal/mol (24389.4576 without restraints) Performing minimization step: 453. Total energy = 24372.4519 kcal/mol (24359.3630 without restraints) Performing minimization step: 454. Total energy = 24342.4369 kcal/mol (24329.3593 without restraints) Performing minimization step: 455. Total energy = 24312.5101 kcal/mol (24299.4435 without restraints) Performing minimization step: 456. Total energy = 24282.6723 kcal/mol (24269.6166 without restraints) Performing minimization step: 457. Total energy = 24252.9223 kcal/mol (24239.8777 without restraints) Performing minimization step: 458. Total energy = 24223.2601 kcal/mol (24210.2263 without restraints) Performing minimization step: 459. Total energy = 24193.6848 kcal/mol (24180.6620 without restraints) Performing minimization step: 460. Total energy = 24164.1964 kcal/mol (24151.1844 without restraints) Performing minimization step: 461. Total energy = 24134.7940 kcal/mol (24121.7927 without restraints) Performing minimization step: 462. Total energy = 24105.4772 kcal/mol (24092.4866 without restraints) Performing minimization step: 463. Total energy = 24076.2453 kcal/mol (24063.2653 without restraints) Performing minimization step: 464. Total energy = 24047.0978 kcal/mol (24034.1283 without restraints) Performing minimization step: 465. Total energy = 24018.0340 kcal/mol (24005.0750 without restraints) Performing minimization step: 466. Total energy = 23989.0534 kcal/mol (23976.1050 without restraints) Performing minimization step: 467. Total energy = 23960.1559 kcal/mol (23947.2178 without restraints) Performing minimization step: 468. Total energy = 23931.3405 kcal/mol (23918.4127 without restraints) Performing minimization step: 469. Total energy = 23902.6072 kcal/mol (23889.6896 without restraints) Performing minimization step: 470. Total energy = 23873.9552 kcal/mol (23861.0477 without restraints) Performing minimization step: 471. Total energy = 23845.3841 kcal/mol (23832.4868 without restraints) Performing minimization step: 472. Total energy = 23816.8936 kcal/mol (23804.0065 without restraints) Performing minimization step: 473. Total energy = 23788.4831 kcal/mol (23775.6062 without restraints) Performing minimization step: 474. Total energy = 23760.1526 kcal/mol (23747.2856 without restraints) Performing minimization step: 475. Total energy = 23731.9008 kcal/mol (23719.0436 without restraints) Performing minimization step: 476. Total energy = 23703.7276 kcal/mol (23690.8804 without restraints) Performing minimization step: 477. Total energy = 23675.6326 kcal/mol (23662.7951 without restraints) Performing minimization step: 478. Total energy = 23647.6149 kcal/mol (23634.7874 without restraints) Performing minimization step: 479. Total energy = 23619.6752 kcal/mol (23606.8574 without restraints) Performing minimization step: 480. Total energy = 23591.8123 kcal/mol (23579.0043 without restraints) Performing minimization step: 481. Total energy = 23564.0258 kcal/mol (23551.2273 without restraints) Performing minimization step: 482. Total energy = 23536.3156 kcal/mol (23523.5268 without restraints) Performing minimization step: 483. Total energy = 23508.6808 kcal/mol (23495.9015 without restraints) Performing minimization step: 484. Total energy = 23481.1214 kcal/mol (23468.3516 without restraints) Performing minimization step: 485. Total energy = 23453.6365 kcal/mol (23440.8762 without restraints) Performing minimization step: 486. Total energy = 23426.2261 kcal/mol (23413.4751 without restraints) Performing minimization step: 487. Total energy = 23398.8900 kcal/mol (23386.1484 without restraints) Performing minimization step: 488. Total energy = 23371.6275 kcal/mol (23358.8954 without restraints) Performing minimization step: 489. Total energy = 23344.4381 kcal/mol (23331.7152 without restraints) Performing minimization step: 490. Total energy = 23317.3214 kcal/mol (23304.6077 without restraints) Performing minimization step: 491. Total energy = 23290.2768 kcal/mol (23277.5720 without restraints) Performing minimization step: 492. Total energy = 23263.3045 kcal/mol (23250.6092 without restraints) Performing minimization step: 493. Total energy = 23236.4044 kcal/mol (23223.7183 without restraints) Performing minimization step: 494. Total energy = 23209.5757 kcal/mol (23196.8986 without restraints) Performing minimization step: 495. Total energy = 23182.8177 kcal/mol (23170.1496 without restraints) Performing minimization step: 496. Total energy = 23156.1306 kcal/mol (23143.4718 without restraints) Performing minimization step: 497. Total energy = 23129.5139 kcal/mol (23116.8637 without restraints) Performing minimization step: 498. Total energy = 23102.9661 kcal/mol (23090.3247 without restraints) Performing minimization step: 499. Total energy = 23076.4881 kcal/mol (23063.8557 without restraints) Performing minimization step: 500. Total energy = 23050.0796 kcal/mol (23037.4560 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 501. Total energy = 23023.7398 kcal/mol (23011.1250 without restraints) Performing minimization step: 502. Total energy = 22997.4686 kcal/mol (22984.8625 without restraints) Performing minimization step: 503. Total energy = 22971.2654 kcal/mol (22958.6680 without restraints) Performing minimization step: 504. Total energy = 22945.1302 kcal/mol (22932.5415 without restraints) Performing minimization step: 505. Total energy = 22919.0622 kcal/mol (22906.4821 without restraints) Performing minimization step: 506. Total energy = 22893.0615 kcal/mol (22880.4901 without restraints) Performing minimization step: 507. Total energy = 22867.1281 kcal/mol (22854.5652 without restraints) Performing minimization step: 508. Total energy = 22841.2613 kcal/mol (22828.7069 without restraints) Performing minimization step: 509. Total energy = 22815.4596 kcal/mol (22802.9135 without restraints) Performing minimization step: 510. Total energy = 22789.7242 kcal/mol (22777.1868 without restraints) Performing minimization step: 511. Total energy = 22764.0545 kcal/mol (22751.5255 without restraints) Performing minimization step: 512. Total energy = 22738.4505 kcal/mol (22725.9298 without restraints) Performing minimization step: 513. Total energy = 22712.9111 kcal/mol (22700.3988 without restraints) Performing minimization step: 514. Total energy = 22687.4365 kcal/mol (22674.9325 without restraints) Performing minimization step: 515. Total energy = 22662.0261 kcal/mol (22649.5305 without restraints) Performing minimization step: 516. Total energy = 22636.6797 kcal/mol (22624.1920 without restraints) Performing minimization step: 517. Total energy = 22611.3969 kcal/mol (22598.9176 without restraints) Performing minimization step: 518. Total energy = 22586.1773 kcal/mol (22573.7061 without restraints) Performing minimization step: 519. Total energy = 22561.0208 kcal/mol (22548.5577 without restraints) Performing minimization step: 520. Total energy = 22535.9276 kcal/mol (22523.4728 without restraints) Performing minimization step: 521. Total energy = 22510.8976 kcal/mol (22498.4509 without restraints) Performing minimization step: 522. Total energy = 22485.9302 kcal/mol (22473.4916 without restraints) Performing minimization step: 523. Total energy = 22461.0246 kcal/mol (22448.5941 without restraints) Performing minimization step: 524. Total energy = 22436.1805 kcal/mol (22423.7578 without restraints) Performing minimization step: 525. Total energy = 22411.3979 kcal/mol (22398.9832 without restraints) Performing minimization step: 526. Total energy = 22386.6763 kcal/mol (22374.2695 without restraints) Performing minimization step: 527. Total energy = 22362.0162 kcal/mol (22349.6173 without restraints) Performing minimization step: 528. Total energy = 22337.4164 kcal/mol (22325.0254 without restraints) Performing minimization step: 529. Total energy = 22312.8768 kcal/mol (22300.4936 without restraints) Performing minimization step: 530. Total energy = 22288.3976 kcal/mol (22276.0222 without restraints) Performing minimization step: 531. Total energy = 22263.9783 kcal/mol (22251.6108 without restraints) Performing minimization step: 532. Total energy = 22239.6194 kcal/mol (22227.2598 without restraints) Performing minimization step: 533. Total energy = 22215.3196 kcal/mol (22202.9675 without restraints) Performing minimization step: 534. Total energy = 22191.0785 kcal/mol (22178.7339 without restraints) Performing minimization step: 535. Total energy = 22166.8965 kcal/mol (22154.5599 without restraints) Performing minimization step: 536. Total energy = 22142.7732 kcal/mol (22130.4443 without restraints) Performing minimization step: 537. Total energy = 22118.7087 kcal/mol (22106.3873 without restraints) Performing minimization step: 538. Total energy = 22094.7015 kcal/mol (22082.3876 without restraints) Performing minimization step: 539. Total energy = 22070.7527 kcal/mol (22058.4464 without restraints) Performing minimization step: 540. Total energy = 22046.8617 kcal/mol (22034.5630 without restraints) Performing minimization step: 541. Total energy = 22023.0283 kcal/mol (22010.7371 without restraints) Performing minimization step: 542. Total energy = 21999.2520 kcal/mol (21986.9682 without restraints) Performing minimization step: 543. Total energy = 21975.5324 kcal/mol (21963.2561 without restraints) Performing minimization step: 544. Total energy = 21951.8696 kcal/mol (21939.6009 without restraints) Performing minimization step: 545. Total energy = 21928.2635 kcal/mol (21916.0020 without restraints) Performing minimization step: 546. Total energy = 21904.7131 kcal/mol (21892.4589 without restraints) Performing minimization step: 547. Total energy = 21881.2191 kcal/mol (21868.9724 without restraints) Performing minimization step: 548. Total energy = 21857.7810 kcal/mol (21845.5416 without restraints) Performing minimization step: 549. Total energy = 21834.3983 kcal/mol (21822.1660 without restraints) Performing minimization step: 550. Total energy = 21811.0708 kcal/mol (21798.8460 without restraints) Performing minimization step: 551. Total energy = 21787.7988 kcal/mol (21775.5812 without restraints) Performing minimization step: 552. Total energy = 21764.5817 kcal/mol (21752.3713 without restraints) Performing minimization step: 553. Total energy = 21741.4195 kcal/mol (21729.2164 without restraints) Performing minimization step: 554. Total energy = 21718.3119 kcal/mol (21706.1159 without restraints) Performing minimization step: 555. Total energy = 21695.2586 kcal/mol (21683.0698 without restraints) Performing minimization step: 556. Total energy = 21672.2594 kcal/mol (21660.0778 without restraints) Performing minimization step: 557. Total energy = 21649.3140 kcal/mol (21637.1395 without restraints) Performing minimization step: 558. Total energy = 21626.4226 kcal/mol (21614.2552 without restraints) Performing minimization step: 559. Total energy = 21603.5846 kcal/mol (21591.4243 without restraints) Performing minimization step: 560. Total energy = 21580.8001 kcal/mol (21568.6468 without restraints) Performing minimization step: 561. Total energy = 21558.0686 kcal/mol (21545.9222 without restraints) Performing minimization step: 562. Total energy = 21535.3896 kcal/mol (21523.2504 without restraints) Performing minimization step: 563. Total energy = 21512.7638 kcal/mol (21500.6315 without restraints) Performing minimization step: 564. Total energy = 21490.1899 kcal/mol (21478.0645 without restraints) Performing minimization step: 565. Total energy = 21467.6683 kcal/mol (21455.5499 without restraints) Performing minimization step: 566. Total energy = 21445.1993 kcal/mol (21433.0878 without restraints) Performing minimization step: 567. Total energy = 21422.7815 kcal/mol (21410.6769 without restraints) Performing minimization step: 568. Total energy = 21400.4159 kcal/mol (21388.3182 without restraints) Performing minimization step: 569. Total energy = 21378.1020 kcal/mol (21366.0112 without restraints) Performing minimization step: 570. Total energy = 21355.8395 kcal/mol (21343.7554 without restraints) Performing minimization step: 571. Total energy = 21333.6282 kcal/mol (21321.5510 without restraints) Performing minimization step: 572. Total energy = 21311.4676 kcal/mol (21299.3972 without restraints) Performing minimization step: 573. Total energy = 21289.3579 kcal/mol (21277.2942 without restraints) Performing minimization step: 574. Total energy = 21267.2990 kcal/mol (21255.2421 without restraints) Performing minimization step: 575. Total energy = 21245.2904 kcal/mol (21233.2403 without restraints) Performing minimization step: 576. Total energy = 21223.3319 kcal/mol (21211.2883 without restraints) Performing minimization step: 577. Total energy = 21201.4234 kcal/mol (21189.3869 without restraints) Performing minimization step: 578. Total energy = 21179.5653 kcal/mol (21167.5353 without restraints) Performing minimization step: 579. Total energy = 21157.7573 kcal/mol (21145.7339 without restraints) Performing minimization step: 580. Total energy = 21135.9983 kcal/mol (21123.9815 without restraints) Performing minimization step: 581. Total energy = 21114.2883 kcal/mol (21102.2782 without restraints) Performing minimization step: 582. Total energy = 21092.6279 kcal/mol (21080.6245 without restraints) Performing minimization step: 583. Total energy = 21071.0163 kcal/mol (21059.0193 without restraints) Performing minimization step: 584. Total energy = 21049.4539 kcal/mol (21037.4635 without restraints) Performing minimization step: 585. Total energy = 21027.9398 kcal/mol (21015.9560 without restraints) Performing minimization step: 586. Total energy = 21006.4741 kcal/mol (20994.4968 without restraints) Performing minimization step: 587. Total energy = 20985.0568 kcal/mol (20973.0859 without restraints) Performing minimization step: 588. Total energy = 20963.6880 kcal/mol (20951.7236 without restraints) Performing minimization step: 589. Total energy = 20942.3676 kcal/mol (20930.4098 without restraints) Performing minimization step: 590. Total energy = 20921.0944 kcal/mol (20909.1429 without restraints) Performing minimization step: 591. Total energy = 20899.8693 kcal/mol (20887.9244 without restraints) Performing minimization step: 592. Total energy = 20878.6916 kcal/mol (20866.7531 without restraints) Performing minimization step: 593. Total energy = 20857.5615 kcal/mol (20845.6294 without restraints) Performing minimization step: 594. Total energy = 20836.4787 kcal/mol (20824.5529 without restraints) Performing minimization step: 595. Total energy = 20815.4424 kcal/mol (20803.5230 without restraints) Performing minimization step: 596. Total energy = 20794.4530 kcal/mol (20782.5400 without restraints) Performing minimization step: 597. Total energy = 20773.5106 kcal/mol (20761.6039 without restraints) Performing minimization step: 598. Total energy = 20752.6146 kcal/mol (20740.7142 without restraints) Performing minimization step: 599. Total energy = 20731.7651 kcal/mol (20719.8710 without restraints) Performing minimization step: 600. Total energy = 20710.9626 kcal/mol (20699.0747 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 601. Total energy = 20690.2056 kcal/mol (20678.3242 without restraints) Performing minimization step: 602. Total energy = 20669.4945 kcal/mol (20657.6191 without restraints) Performing minimization step: 603. Total energy = 20648.8293 kcal/mol (20636.9603 without restraints) Performing minimization step: 604. Total energy = 20628.2098 kcal/mol (20616.3469 without restraints) Performing minimization step: 605. Total energy = 20607.6358 kcal/mol (20595.7793 without restraints) Performing minimization step: 606. Total energy = 20587.1069 kcal/mol (20575.2562 without restraints) Performing minimization step: 607. Total energy = 20566.6233 kcal/mol (20554.7790 without restraints) Performing minimization step: 608. Total energy = 20546.1850 kcal/mol (20534.3468 without restraints) Performing minimization step: 609. Total energy = 20525.7916 kcal/mol (20513.9595 without restraints) Performing minimization step: 610. Total energy = 20505.4429 kcal/mol (20493.6170 without restraints) Performing minimization step: 611. Total energy = 20485.1389 kcal/mol (20473.3191 without restraints) Performing minimization step: 612. Total energy = 20464.8796 kcal/mol (20453.0659 without restraints) Performing minimization step: 613. Total energy = 20444.6642 kcal/mol (20432.8565 without restraints) Performing minimization step: 614. Total energy = 20424.4936 kcal/mol (20412.6920 without restraints) Performing minimization step: 615. Total energy = 20404.3665 kcal/mol (20392.5709 without restraints) Performing minimization step: 616. Total energy = 20384.2832 kcal/mol (20372.4936 without restraints) Performing minimization step: 617. Total energy = 20364.2439 kcal/mol (20352.4604 without restraints) Performing minimization step: 618. Total energy = 20344.2487 kcal/mol (20332.4713 without restraints) Performing minimization step: 619. Total energy = 20324.2966 kcal/mol (20312.5252 without restraints) Performing minimization step: 620. Total energy = 20304.3881 kcal/mol (20292.6226 without restraints) Performing minimization step: 621. Total energy = 20284.5228 kcal/mol (20272.7634 without restraints) Performing minimization step: 622. Total energy = 20264.7006 kcal/mol (20252.9470 without restraints) Performing minimization step: 623. Total energy = 20244.9212 kcal/mol (20233.1734 without restraints) Performing minimization step: 624. Total energy = 20225.1849 kcal/mol (20213.4431 without restraints) Performing minimization step: 625. Total energy = 20205.4911 kcal/mol (20193.7553 without restraints) Performing minimization step: 626. Total energy = 20185.8403 kcal/mol (20174.1103 without restraints) Performing minimization step: 627. Total energy = 20166.2319 kcal/mol (20154.5079 without restraints) Performing minimization step: 628. Total energy = 20146.6657 kcal/mol (20134.9473 without restraints) Performing minimization step: 629. Total energy = 20127.1413 kcal/mol (20115.4290 without restraints) Performing minimization step: 630. Total energy = 20107.6590 kcal/mol (20095.9526 without restraints) Performing minimization step: 631. Total energy = 20088.2192 kcal/mol (20076.5185 without restraints) Performing minimization step: 632. Total energy = 20068.8209 kcal/mol (20057.1261 without restraints) Performing minimization step: 633. Total energy = 20049.4642 kcal/mol (20037.7750 without restraints) Performing minimization step: 634. Total energy = 20030.1487 kcal/mol (20018.4651 without restraints) Performing minimization step: 635. Total energy = 20010.8746 kcal/mol (19999.1969 without restraints) Performing minimization step: 636. Total energy = 19991.6421 kcal/mol (19979.9701 without restraints) Performing minimization step: 637. Total energy = 19972.4503 kcal/mol (19960.7841 without restraints) Performing minimization step: 638. Total energy = 19953.2998 kcal/mol (19941.6393 without restraints) Performing minimization step: 639. Total energy = 19934.1903 kcal/mol (19922.5355 without restraints) Performing minimization step: 640. Total energy = 19915.1216 kcal/mol (19903.4725 without restraints) Performing minimization step: 641. Total energy = 19896.0927 kcal/mol (19884.4493 without restraints) Performing minimization step: 642. Total energy = 19877.1047 kcal/mol (19865.4670 without restraints) Performing minimization step: 643. Total energy = 19858.1572 kcal/mol (19846.5252 without restraints) Performing minimization step: 644. Total energy = 19839.2504 kcal/mol (19827.6240 without restraints) Performing minimization step: 645. Total energy = 19820.3840 kcal/mol (19808.7633 without restraints) Performing minimization step: 646. Total energy = 19801.5572 kcal/mol (19789.9420 without restraints) Performing minimization step: 647. Total energy = 19782.7705 kcal/mol (19771.1610 without restraints) Performing minimization step: 648. Total energy = 19764.0236 kcal/mol (19752.4196 without restraints) Performing minimization step: 649. Total energy = 19745.3163 kcal/mol (19733.7181 without restraints) Performing minimization step: 650. Total energy = 19726.6489 kcal/mol (19715.0561 without restraints) Performing minimization step: 651. Total energy = 19708.0207 kcal/mol (19696.4333 without restraints) Performing minimization step: 652. Total energy = 19689.4321 kcal/mol (19677.8504 without restraints) Performing minimization step: 653. Total energy = 19670.8826 kcal/mol (19659.3064 without restraints) Performing minimization step: 654. Total energy = 19652.3722 kcal/mol (19640.8016 without restraints) Performing minimization step: 655. Total energy = 19633.9003 kcal/mol (19622.3351 without restraints) Performing minimization step: 656. Total energy = 19615.4679 kcal/mol (19603.9083 without restraints) Performing minimization step: 657. Total energy = 19597.0739 kcal/mol (19585.5195 without restraints) Performing minimization step: 658. Total energy = 19578.7184 kcal/mol (19567.1697 without restraints) Performing minimization step: 659. Total energy = 19560.4018 kcal/mol (19548.8585 without restraints) Performing minimization step: 660. Total energy = 19542.1237 kcal/mol (19530.5859 without restraints) Performing minimization step: 661. Total energy = 19523.8837 kcal/mol (19512.3513 without restraints) Performing minimization step: 662. Total energy = 19505.6826 kcal/mol (19494.1557 without restraints) Performing minimization step: 663. Total energy = 19487.5185 kcal/mol (19475.9969 without restraints) Performing minimization step: 664. Total energy = 19469.3930 kcal/mol (19457.8768 without restraints) Performing minimization step: 665. Total energy = 19451.3055 kcal/mol (19439.7947 without restraints) Performing minimization step: 666. Total energy = 19433.2552 kcal/mol (19421.7498 without restraints) Performing minimization step: 667. Total energy = 19415.2432 kcal/mol (19403.7432 without restraints) Performing minimization step: 668. Total energy = 19397.2686 kcal/mol (19385.7740 without restraints) Performing minimization step: 669. Total energy = 19379.3308 kcal/mol (19367.8415 without restraints) Performing minimization step: 670. Total energy = 19361.4304 kcal/mol (19349.9463 without restraints) Performing minimization step: 671. Total energy = 19343.5675 kcal/mol (19332.0889 without restraints) Performing minimization step: 672. Total energy = 19325.7417 kcal/mol (19314.2684 without restraints) Performing minimization step: 673. Total energy = 19307.9527 kcal/mol (19296.4846 without restraints) Performing minimization step: 674. Total energy = 19290.2011 kcal/mol (19278.7384 without restraints) Performing minimization step: 675. Total energy = 19272.4860 kcal/mol (19261.0285 without restraints) Performing minimization step: 676. Total energy = 19254.8082 kcal/mol (19243.3561 without restraints) Performing minimization step: 677. Total energy = 19237.1666 kcal/mol (19225.7196 without restraints) Performing minimization step: 678. Total energy = 19219.5615 kcal/mol (19208.1199 without restraints) Performing minimization step: 679. Total energy = 19201.9931 kcal/mol (19190.5566 without restraints) Performing minimization step: 680. Total energy = 19184.4606 kcal/mol (19173.0294 without restraints) Performing minimization step: 681. Total energy = 19166.9646 kcal/mol (19155.5385 without restraints) Performing minimization step: 682. Total energy = 19149.5036 kcal/mol (19138.0827 without restraints) Performing minimization step: 683. Total energy = 19132.0789 kcal/mol (19120.6632 without restraints) Performing minimization step: 684. Total energy = 19114.6899 kcal/mol (19103.2794 without restraints) Performing minimization step: 685. Total energy = 19097.3374 kcal/mol (19085.9321 without restraints) Performing minimization step: 686. Total energy = 19080.0199 kcal/mol (19068.6198 without restraints) Performing minimization step: 687. Total energy = 19062.7387 kcal/mol (19051.3437 without restraints) Performing minimization step: 688. Total energy = 19045.4926 kcal/mol (19034.1027 without restraints) Performing minimization step: 689. Total energy = 19028.2815 kcal/mol (19016.8967 without restraints) Performing minimization step: 690. Total energy = 19011.1057 kcal/mol (18999.7260 without restraints) Performing minimization step: 691. Total energy = 18993.9651 kcal/mol (18982.5903 without restraints) Performing minimization step: 692. Total energy = 18976.8594 kcal/mol (18965.4899 without restraints) Performing minimization step: 693. Total energy = 18959.7892 kcal/mol (18948.4248 without restraints) Performing minimization step: 694. Total energy = 18942.7532 kcal/mol (18931.3938 without restraints) Performing minimization step: 695. Total energy = 18925.7523 kcal/mol (18914.3980 without restraints) Performing minimization step: 696. Total energy = 18908.7862 kcal/mol (18897.4371 without restraints) Performing minimization step: 697. Total energy = 18891.8546 kcal/mol (18880.5104 without restraints) Performing minimization step: 698. Total energy = 18874.9579 kcal/mol (18863.6190 without restraints) Performing minimization step: 699. Total energy = 18858.0952 kcal/mol (18846.7611 without restraints) Performing minimization step: 700. Total energy = 18841.2667 kcal/mol (18829.9376 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 701. Total energy = 18824.4723 kcal/mol (18813.1481 without restraints) Performing minimization step: 702. Total energy = 18807.7118 kcal/mol (18796.3927 without restraints) Performing minimization step: 703. Total energy = 18790.9852 kcal/mol (18779.6710 without restraints) Performing minimization step: 704. Total energy = 18774.2929 kcal/mol (18762.9837 without restraints) Performing minimization step: 705. Total energy = 18757.6341 kcal/mol (18746.3300 without restraints) Performing minimization step: 706. Total energy = 18741.0087 kcal/mol (18729.7096 without restraints) Performing minimization step: 707. Total energy = 18724.4174 kcal/mol (18713.1232 without restraints) Performing minimization step: 708. Total energy = 18707.8591 kcal/mol (18696.5698 without restraints) Performing minimization step: 709. Total energy = 18691.3345 kcal/mol (18680.0501 without restraints) Performing minimization step: 710. Total energy = 18674.8431 kcal/mol (18663.5636 without restraints) Performing minimization step: 711. Total energy = 18658.3849 kcal/mol (18647.1101 without restraints) Performing minimization step: 712. Total energy = 18641.9593 kcal/mol (18630.6896 without restraints) Performing minimization step: 713. Total energy = 18625.5676 kcal/mol (18614.3029 without restraints) Performing minimization step: 714. Total energy = 18609.2087 kcal/mol (18597.9487 without restraints) Performing minimization step: 715. Total energy = 18592.8826 kcal/mol (18581.6276 without restraints) Performing minimization step: 716. Total energy = 18576.5896 kcal/mol (18565.3394 without restraints) Performing minimization step: 717. Total energy = 18560.3285 kcal/mol (18549.0829 without restraints) Performing minimization step: 718. Total energy = 18544.0998 kcal/mol (18532.8593 without restraints) Performing minimization step: 719. Total energy = 18527.9045 kcal/mol (18516.6688 without restraints) Performing minimization step: 720. Total energy = 18511.7408 kcal/mol (18500.5099 without restraints) Performing minimization step: 721. Total energy = 18495.6099 kcal/mol (18484.3839 without restraints) Performing minimization step: 722. Total energy = 18479.5110 kcal/mol (18468.2897 without restraints) Performing minimization step: 723. Total energy = 18463.4441 kcal/mol (18452.2276 without restraints) Performing minimization step: 724. Total energy = 18447.4094 kcal/mol (18436.1979 without restraints) Performing minimization step: 725. Total energy = 18431.4067 kcal/mol (18420.1998 without restraints) Performing minimization step: 726. Total energy = 18415.4353 kcal/mol (18404.2332 without restraints) Performing minimization step: 727. Total energy = 18399.4960 kcal/mol (18388.2985 without restraints) Performing minimization step: 728. Total energy = 18383.5884 kcal/mol (18372.3957 without restraints) Performing minimization step: 729. Total energy = 18367.7121 kcal/mol (18356.5243 without restraints) Performing minimization step: 730. Total energy = 18351.8671 kcal/mol (18340.6839 without restraints) Performing minimization step: 731. Total energy = 18336.0538 kcal/mol (18324.8752 without restraints) Performing minimization step: 732. Total energy = 18320.2717 kcal/mol (18309.0979 without restraints) Performing minimization step: 733. Total energy = 18304.5209 kcal/mol (18293.3518 without restraints) Performing minimization step: 734. Total energy = 18288.8017 kcal/mol (18277.6373 without restraints) Performing minimization step: 735. Total energy = 18273.1136 kcal/mol (18261.9542 without restraints) Performing minimization step: 736. Total energy = 18257.4561 kcal/mol (18246.3010 without restraints) Performing minimization step: 737. Total energy = 18241.8288 kcal/mol (18230.6785 without restraints) Performing minimization step: 738. Total energy = 18226.2329 kcal/mol (18215.0872 without restraints) Performing minimization step: 739. Total energy = 18210.6679 kcal/mol (18199.5269 without restraints) Performing minimization step: 740. Total energy = 18195.1339 kcal/mol (18183.9975 without restraints) Performing minimization step: 741. Total energy = 18179.6300 kcal/mol (18168.4983 without restraints) Performing minimization step: 742. Total energy = 18164.1567 kcal/mol (18153.0296 without restraints) Performing minimization step: 743. Total energy = 18148.7141 kcal/mol (18137.5917 without restraints) Performing minimization step: 744. Total energy = 18133.3012 kcal/mol (18122.1832 without restraints) Performing minimization step: 745. Total energy = 18117.9189 kcal/mol (18106.8055 without restraints) Performing minimization step: 746. Total energy = 18102.5665 kcal/mol (18091.4579 without restraints) Performing minimization step: 747. Total energy = 18087.2441 kcal/mol (18076.1401 without restraints) Performing minimization step: 748. Total energy = 18071.9509 kcal/mol (18060.8511 without restraints) Performing minimization step: 749. Total energy = 18056.6881 kcal/mol (18045.5931 without restraints) Performing minimization step: 750. Total energy = 18041.4553 kcal/mol (18030.3649 without restraints) Performing minimization step: 751. Total energy = 18026.2526 kcal/mol (18015.1668 without restraints) Performing minimization step: 752. Total energy = 18011.0792 kcal/mol (17999.9978 without restraints) Performing minimization step: 753. Total energy = 17995.9349 kcal/mol (17984.8580 without restraints) Performing minimization step: 754. Total energy = 17980.8203 kcal/mol (17969.7480 without restraints) Performing minimization step: 755. Total energy = 17965.7351 kcal/mol (17954.6672 without restraints) Performing minimization step: 756. Total energy = 17950.6792 kcal/mol (17939.6159 without restraints) Performing minimization step: 757. Total energy = 17935.6526 kcal/mol (17924.5938 without restraints) Performing minimization step: 758. Total energy = 17920.6552 kcal/mol (17909.6009 without restraints) Performing minimization step: 759. Total energy = 17905.6870 kcal/mol (17894.6372 without restraints) Performing minimization step: 760. Total energy = 17890.7476 kcal/mol (17879.7024 without restraints) Performing minimization step: 761. Total energy = 17875.8373 kcal/mol (17864.7966 without restraints) Performing minimization step: 762. Total energy = 17860.9557 kcal/mol (17849.9193 without restraints) Performing minimization step: 763. Total energy = 17846.1026 kcal/mol (17835.0707 without restraints) Performing minimization step: 764. Total energy = 17831.2784 kcal/mol (17820.2509 without restraints) Performing minimization step: 765. Total energy = 17816.4825 kcal/mol (17805.4594 without restraints) Performing minimization step: 766. Total energy = 17801.7155 kcal/mol (17790.6969 without restraints) Performing minimization step: 767. Total energy = 17786.9769 kcal/mol (17775.9626 without restraints) Performing minimization step: 768. Total energy = 17772.2658 kcal/mol (17761.2560 without restraints) Performing minimization step: 769. Total energy = 17757.5830 kcal/mol (17746.5776 without restraints) Performing minimization step: 770. Total energy = 17742.9287 kcal/mol (17731.9278 without restraints) Performing minimization step: 771. Total energy = 17728.3027 kcal/mol (17717.3061 without restraints) Performing minimization step: 772. Total energy = 17713.7046 kcal/mol (17702.7123 without restraints) Performing minimization step: 773. Total energy = 17699.1344 kcal/mol (17688.1465 without restraints) Performing minimization step: 774. Total energy = 17684.5919 kcal/mol (17673.6083 without restraints) Performing minimization step: 775. Total energy = 17670.0773 kcal/mol (17659.0981 without restraints) Performing minimization step: 776. Total energy = 17655.5906 kcal/mol (17644.6156 without restraints) Performing minimization step: 777. Total energy = 17641.1313 kcal/mol (17630.1608 without restraints) Performing minimization step: 778. Total energy = 17626.6993 kcal/mol (17615.7331 without restraints) Performing minimization step: 779. Total energy = 17612.2953 kcal/mol (17601.3337 without restraints) Performing minimization step: 780. Total energy = 17597.9187 kcal/mol (17586.9611 without restraints) Performing minimization step: 781. Total energy = 17583.5692 kcal/mol (17572.6160 without restraints) Performing minimization step: 782. Total energy = 17569.2470 kcal/mol (17558.2980 without restraints) Performing minimization step: 783. Total energy = 17554.9522 kcal/mol (17544.0076 without restraints) Performing minimization step: 784. Total energy = 17540.6842 kcal/mol (17529.7439 without restraints) Performing minimization step: 785. Total energy = 17526.4435 kcal/mol (17515.5074 without restraints) Performing minimization step: 786. Total energy = 17512.2297 kcal/mol (17501.2979 without restraints) Performing minimization step: 787. Total energy = 17498.0423 kcal/mol (17487.1148 without restraints) Performing minimization step: 788. Total energy = 17483.8824 kcal/mol (17472.9592 without restraints) Performing minimization step: 789. Total energy = 17469.7489 kcal/mol (17458.8298 without restraints) Performing minimization step: 790. Total energy = 17455.6419 kcal/mol (17444.7271 without restraints) Performing minimization step: 791. Total energy = 17441.5620 kcal/mol (17430.6515 without restraints) Performing minimization step: 792. Total energy = 17427.5087 kcal/mol (17416.6023 without restraints) Performing minimization step: 793. Total energy = 17413.4810 kcal/mol (17402.5789 without restraints) Performing minimization step: 794. Total energy = 17399.4799 kcal/mol (17388.5820 without restraints) Performing minimization step: 795. Total energy = 17385.5052 kcal/mol (17374.6115 without restraints) Performing minimization step: 796. Total energy = 17371.5571 kcal/mol (17360.6676 without restraints) Performing minimization step: 797. Total energy = 17357.6343 kcal/mol (17346.7489 without restraints) Performing minimization step: 798. Total energy = 17343.7382 kcal/mol (17332.8570 without restraints) Performing minimization step: 799. Total energy = 17329.8677 kcal/mol (17318.9908 without restraints) Performing minimization step: 800. Total energy = 17316.0233 kcal/mol (17305.1505 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 801. Total energy = 17302.2042 kcal/mol (17291.3356 without restraints) Performing minimization step: 802. Total energy = 17288.4114 kcal/mol (17277.5469 without restraints) Performing minimization step: 803. Total energy = 17274.6444 kcal/mol (17263.7840 without restraints) Performing minimization step: 804. Total energy = 17260.9029 kcal/mol (17250.0468 without restraints) Performing minimization step: 805. Total energy = 17247.1870 kcal/mol (17236.3349 without restraints) Performing minimization step: 806. Total energy = 17233.4968 kcal/mol (17222.6489 without restraints) Performing minimization step: 807. Total energy = 17219.8319 kcal/mol (17208.9881 without restraints) Performing minimization step: 808. Total energy = 17206.1923 kcal/mol (17195.3526 without restraints) Performing minimization step: 809. Total energy = 17192.5778 kcal/mol (17181.7422 without restraints) Performing minimization step: 810. Total energy = 17178.9881 kcal/mol (17168.1565 without restraints) Performing minimization step: 811. Total energy = 17165.4239 kcal/mol (17154.5964 without restraints) Performing minimization step: 812. Total energy = 17151.8848 kcal/mol (17141.0614 without restraints) Performing minimization step: 813. Total energy = 17138.3707 kcal/mol (17127.5514 without restraints) Performing minimization step: 814. Total energy = 17124.8814 kcal/mol (17114.0662 without restraints) Performing minimization step: 815. Total energy = 17111.4171 kcal/mol (17100.6060 without restraints) Performing minimization step: 816. Total energy = 17097.9775 kcal/mol (17087.1704 without restraints) Performing minimization step: 817. Total energy = 17084.5618 kcal/mol (17073.7587 without restraints) Performing minimization step: 818. Total energy = 17071.1710 kcal/mol (17060.3721 without restraints) Performing minimization step: 819. Total energy = 17057.8052 kcal/mol (17047.0102 without restraints) Performing minimization step: 820. Total energy = 17044.4638 kcal/mol (17033.6728 without restraints) Performing minimization step: 821. Total energy = 17031.1470 kcal/mol (17020.3601 without restraints) Performing minimization step: 822. Total energy = 17017.8547 kcal/mol (17007.0718 without restraints) Performing minimization step: 823. Total energy = 17004.5869 kcal/mol (16993.8081 without restraints) Performing minimization step: 824. Total energy = 16991.3432 kcal/mol (16980.5684 without restraints) Performing minimization step: 825. Total energy = 16978.1235 kcal/mol (16967.3526 without restraints) Performing minimization step: 826. Total energy = 16964.9275 kcal/mol (16954.1606 without restraints) Performing minimization step: 827. Total energy = 16951.7557 kcal/mol (16940.9928 without restraints) Performing minimization step: 828. Total energy = 16938.6082 kcal/mol (16927.8493 without restraints) Performing minimization step: 829. Total energy = 16925.4844 kcal/mol (16914.7294 without restraints) Performing minimization step: 830. Total energy = 16912.3848 kcal/mol (16901.6338 without restraints) Performing minimization step: 831. Total energy = 16899.3087 kcal/mol (16888.5616 without restraints) Performing minimization step: 832. Total energy = 16886.2561 kcal/mol (16875.5130 without restraints) Performing minimization step: 833. Total energy = 16873.2272 kcal/mol (16862.4880 without restraints) Performing minimization step: 834. Total energy = 16860.2226 kcal/mol (16849.4874 without restraints) Performing minimization step: 835. Total energy = 16847.2410 kcal/mol (16836.5096 without restraints) Performing minimization step: 836. Total energy = 16834.2827 kcal/mol (16823.5553 without restraints) Performing minimization step: 837. Total energy = 16821.3484 kcal/mol (16810.6249 without restraints) Performing minimization step: 838. Total energy = 16808.4370 kcal/mol (16797.7175 without restraints) Performing minimization step: 839. Total energy = 16795.5484 kcal/mol (16784.8327 without restraints) Performing minimization step: 840. Total energy = 16782.6834 kcal/mol (16771.9716 without restraints) Performing minimization step: 841. Total energy = 16769.8416 kcal/mol (16759.1336 without restraints) Performing minimization step: 842. Total energy = 16757.0227 kcal/mol (16746.3186 without restraints) Performing minimization step: 843. Total energy = 16744.2266 kcal/mol (16733.5264 without restraints) Performing minimization step: 844. Total energy = 16731.4536 kcal/mol (16720.7574 without restraints) Performing minimization step: 845. Total energy = 16718.7039 kcal/mol (16708.0114 without restraints) Performing minimization step: 846. Total energy = 16705.9768 kcal/mol (16695.2883 without restraints) Performing minimization step: 847. Total energy = 16693.2725 kcal/mol (16682.5880 without restraints) Performing minimization step: 848. Total energy = 16680.5907 kcal/mol (16669.9098 without restraints) Performing minimization step: 849. Total energy = 16667.9313 kcal/mol (16657.2542 without restraints) Performing minimization step: 850. Total energy = 16655.2943 kcal/mol (16644.6210 without restraints) Performing minimization step: 851. Total energy = 16642.6798 kcal/mol (16632.0102 without restraints) Performing minimization step: 852. Total energy = 16630.0867 kcal/mol (16619.4211 without restraints) Performing minimization step: 853. Total energy = 16617.5172 kcal/mol (16606.8554 without restraints) Performing minimization step: 854. Total energy = 16604.9698 kcal/mol (16594.3119 without restraints) Performing minimization step: 855. Total energy = 16592.4445 kcal/mol (16581.7904 without restraints) Performing minimization step: 856. Total energy = 16579.9418 kcal/mol (16569.2915 without restraints) Performing minimization step: 857. Total energy = 16567.4608 kcal/mol (16556.8142 without restraints) Performing minimization step: 858. Total energy = 16555.0020 kcal/mol (16544.3592 without restraints) Performing minimization step: 859. Total energy = 16542.5653 kcal/mol (16531.9263 without restraints) Performing minimization step: 860. Total energy = 16530.1505 kcal/mol (16519.5153 without restraints) Performing minimization step: 861. Total energy = 16517.7577 kcal/mol (16507.1263 without restraints) Performing minimization step: 862. Total energy = 16505.3860 kcal/mol (16494.7581 without restraints) Performing minimization step: 863. Total energy = 16493.0365 kcal/mol (16482.4124 without restraints) Performing minimization step: 864. Total energy = 16480.7082 kcal/mol (16470.0881 without restraints) Performing minimization step: 865. Total energy = 16468.4020 kcal/mol (16457.7855 without restraints) Performing minimization step: 866. Total energy = 16456.1173 kcal/mol (16445.5045 without restraints) Performing minimization step: 867. Total energy = 16443.8544 kcal/mol (16433.2454 without restraints) Performing minimization step: 868. Total energy = 16431.6124 kcal/mol (16421.0069 without restraints) Performing minimization step: 869. Total energy = 16419.3919 kcal/mol (16408.7903 without restraints) Performing minimization step: 870. Total energy = 16407.1930 kcal/mol (16396.5952 without restraints) Performing minimization step: 871. Total energy = 16395.0151 kcal/mol (16384.4211 without restraints) Performing minimization step: 872. Total energy = 16382.8585 kcal/mol (16372.2680 without restraints) Performing minimization step: 873. Total energy = 16370.7230 kcal/mol (16360.1362 without restraints) Performing minimization step: 874. Total energy = 16358.6087 kcal/mol (16348.0257 without restraints) Performing minimization step: 875. Total energy = 16346.5153 kcal/mol (16335.9358 without restraints) Performing minimization step: 876. Total energy = 16334.4428 kcal/mol (16323.8669 without restraints) Performing minimization step: 877. Total energy = 16322.3915 kcal/mol (16311.8196 without restraints) Performing minimization step: 878. Total energy = 16310.3607 kcal/mol (16299.7923 without restraints) Performing minimization step: 879. Total energy = 16298.3510 kcal/mol (16287.7863 without restraints) Performing minimization step: 880. Total energy = 16286.3618 kcal/mol (16275.8008 without restraints) Performing minimization step: 881. Total energy = 16274.3931 kcal/mol (16263.8357 without restraints) Performing minimization step: 882. Total energy = 16262.4455 kcal/mol (16251.8917 without restraints) Performing minimization step: 883. Total energy = 16250.5183 kcal/mol (16239.9681 without restraints) Performing minimization step: 884. Total energy = 16238.6112 kcal/mol (16228.0647 without restraints) Performing minimization step: 885. Total energy = 16226.7247 kcal/mol (16216.1818 without restraints) Performing minimization step: 886. Total energy = 16214.8589 kcal/mol (16204.3199 without restraints) Performing minimization step: 887. Total energy = 16203.0135 kcal/mol (16192.4779 without restraints) Performing minimization step: 888. Total energy = 16191.1887 kcal/mol (16180.6567 without restraints) Performing minimization step: 889. Total energy = 16179.3838 kcal/mol (16168.8554 without restraints) Performing minimization step: 890. Total energy = 16167.5989 kcal/mol (16157.0741 without restraints) Performing minimization step: 891. Total energy = 16155.8343 kcal/mol (16145.3131 without restraints) Performing minimization step: 892. Total energy = 16144.0897 kcal/mol (16133.5720 without restraints) Performing minimization step: 893. Total energy = 16132.3648 kcal/mol (16121.8507 without restraints) Performing minimization step: 894. Total energy = 16120.6601 kcal/mol (16110.1496 without restraints) Performing minimization step: 895. Total energy = 16108.9752 kcal/mol (16098.4682 without restraints) Performing minimization step: 896. Total energy = 16097.3105 kcal/mol (16086.8073 without restraints) Performing minimization step: 897. Total energy = 16085.6652 kcal/mol (16075.1654 without restraints) Performing minimization step: 898. Total energy = 16074.0395 kcal/mol (16063.5432 without restraints) Performing minimization step: 899. Total energy = 16062.4336 kcal/mol (16051.9411 without restraints) Performing minimization step: 900. Total energy = 16050.8472 kcal/mol (16040.3580 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 901. Total energy = 16039.2802 kcal/mol (16028.7944 without restraints) Performing minimization step: 902. Total energy = 16027.7327 kcal/mol (16017.2506 without restraints) Performing minimization step: 903. Total energy = 16016.2044 kcal/mol (16005.7259 without restraints) Performing minimization step: 904. Total energy = 16004.6959 kcal/mol (15994.2209 without restraints) Performing minimization step: 905. Total energy = 15993.2073 kcal/mol (15982.7359 without restraints) Performing minimization step: 906. Total energy = 15981.7376 kcal/mol (15971.2696 without restraints) Performing minimization step: 907. Total energy = 15970.2870 kcal/mol (15959.8225 without restraints) Performing minimization step: 908. Total energy = 15958.8560 kcal/mol (15948.3950 without restraints) Performing minimization step: 909. Total energy = 15947.4432 kcal/mol (15936.9857 without restraints) Performing minimization step: 910. Total energy = 15936.0500 kcal/mol (15925.5961 without restraints) Performing minimization step: 911. Total energy = 15924.6758 kcal/mol (15914.2253 without restraints) Performing minimization step: 912. Total energy = 15913.3201 kcal/mol (15902.8731 without restraints) Performing minimization step: 913. Total energy = 15901.9836 kcal/mol (15891.5401 without restraints) Performing minimization step: 914. Total energy = 15890.6664 kcal/mol (15880.2264 without restraints) Performing minimization step: 915. Total energy = 15879.3679 kcal/mol (15868.9313 without restraints) Performing minimization step: 916. Total energy = 15868.0881 kcal/mol (15857.6550 without restraints) Performing minimization step: 917. Total energy = 15856.8270 kcal/mol (15846.3974 without restraints) Performing minimization step: 918. Total energy = 15845.5845 kcal/mol (15835.1581 without restraints) Performing minimization step: 919. Total energy = 15834.3598 kcal/mol (15823.9370 without restraints) Performing minimization step: 920. Total energy = 15823.1547 kcal/mol (15812.7357 without restraints) Performing minimization step: 921. Total energy = 15811.9683 kcal/mol (15801.5523 without restraints) Performing minimization step: 922. Total energy = 15800.8003 kcal/mol (15790.3878 without restraints) Performing minimization step: 923. Total energy = 15789.6504 kcal/mol (15779.2414 without restraints) Performing minimization step: 924. Total energy = 15778.5190 kcal/mol (15768.1133 without restraints) Performing minimization step: 925. Total energy = 15767.4054 kcal/mol (15757.0031 without restraints) Performing minimization step: 926. Total energy = 15756.3101 kcal/mol (15745.9112 without restraints) Performing minimization step: 927. Total energy = 15745.2331 kcal/mol (15734.8375 without restraints) Performing minimization step: 928. Total energy = 15734.1743 kcal/mol (15723.7821 without restraints) Performing minimization step: 929. Total energy = 15723.1337 kcal/mol (15712.7450 without restraints) Performing minimization step: 930. Total energy = 15712.1112 kcal/mol (15701.7258 without restraints) Performing minimization step: 931. Total energy = 15701.1066 kcal/mol (15690.7248 without restraints) Performing minimization step: 932. Total energy = 15690.1201 kcal/mol (15679.7416 without restraints) Performing minimization step: 933. Total energy = 15679.1517 kcal/mol (15668.7767 without restraints) Performing minimization step: 934. Total energy = 15668.2006 kcal/mol (15657.8289 without restraints) Performing minimization step: 935. Total energy = 15657.2683 kcal/mol (15646.9000 without restraints) Performing minimization step: 936. Total energy = 15646.3533 kcal/mol (15635.9883 without restraints) Performing minimization step: 937. Total energy = 15635.4559 kcal/mol (15625.0942 without restraints) Performing minimization step: 938. Total energy = 15624.5762 kcal/mol (15614.2179 without restraints) Performing minimization step: 939. Total energy = 15613.7137 kcal/mol (15603.3588 without restraints) Performing minimization step: 940. Total energy = 15602.8695 kcal/mol (15592.5181 without restraints) Performing minimization step: 941. Total energy = 15592.0429 kcal/mol (15581.6946 without restraints) Performing minimization step: 942. Total energy = 15581.2338 kcal/mol (15570.8889 without restraints) Performing minimization step: 943. Total energy = 15570.4418 kcal/mol (15560.1003 without restraints) Performing minimization step: 944. Total energy = 15559.6672 kcal/mol (15549.3290 without restraints) Performing minimization step: 945. Total energy = 15548.9104 kcal/mol (15538.5756 without restraints) Performing minimization step: 946. Total energy = 15538.1701 kcal/mol (15527.8384 without restraints) Performing minimization step: 947. Total energy = 15527.4473 kcal/mol (15517.1190 without restraints) Performing minimization step: 948. Total energy = 15516.7417 kcal/mol (15506.4167 without restraints) Performing minimization step: 949. Total energy = 15506.0534 kcal/mol (15495.7317 without restraints) Performing minimization step: 950. Total energy = 15495.3821 kcal/mol (15485.0637 without restraints) Performing minimization step: 951. Total energy = 15484.7281 kcal/mol (15474.4129 without restraints) Performing minimization step: 952. Total energy = 15474.0906 kcal/mol (15463.7788 without restraints) Performing minimization step: 953. Total energy = 15463.4700 kcal/mol (15453.1613 without restraints) Performing minimization step: 954. Total energy = 15452.8668 kcal/mol (15442.5616 without restraints) Performing minimization step: 955. Total energy = 15442.2801 kcal/mol (15431.9781 without restraints) Performing minimization step: 956. Total energy = 15431.7105 kcal/mol (15421.4118 without restraints) Performing minimization step: 957. Total energy = 15421.1577 kcal/mol (15410.8622 without restraints) Performing minimization step: 958. Total energy = 15410.6216 kcal/mol (15400.3294 without restraints) Performing minimization step: 959. Total energy = 15400.1026 kcal/mol (15389.8138 without restraints) Performing minimization step: 960. Total energy = 15389.6004 kcal/mol (15379.3147 without restraints) Performing minimization step: 961. Total energy = 15379.1139 kcal/mol (15368.8314 without restraints) Performing minimization step: 962. Total energy = 15368.6443 kcal/mol (15358.3651 without restraints) Performing minimization step: 963. Total energy = 15358.1915 kcal/mol (15347.9156 without restraints) Performing minimization step: 964. Total energy = 15347.7554 kcal/mol (15337.4827 without restraints) Performing minimization step: 965. Total energy = 15337.3352 kcal/mol (15327.0658 without restraints) Performing minimization step: 966. Total energy = 15326.9321 kcal/mol (15316.6660 without restraints) Performing minimization step: 967. Total energy = 15316.5452 kcal/mol (15306.2823 without restraints) Performing minimization step: 968. Total energy = 15306.1742 kcal/mol (15295.9144 without restraints) Performing minimization step: 969. Total energy = 15295.8195 kcal/mol (15285.5630 without restraints) Performing minimization step: 970. Total energy = 15285.4805 kcal/mol (15275.2272 without restraints) Performing minimization step: 971. Total energy = 15275.1582 kcal/mol (15264.9080 without restraints) Performing minimization step: 972. Total energy = 15264.8519 kcal/mol (15254.6048 without restraints) Performing minimization step: 973. Total energy = 15254.5618 kcal/mol (15244.3180 without restraints) Performing minimization step: 974. Total energy = 15244.2876 kcal/mol (15234.0470 without restraints) Performing minimization step: 975. Total energy = 15234.0295 kcal/mol (15223.7921 without restraints) Performing minimization step: 976. Total energy = 15223.7876 kcal/mol (15213.5534 without restraints) Performing minimization step: 977. Total energy = 15213.5616 kcal/mol (15203.3305 without restraints) Performing minimization step: 978. Total energy = 15203.3509 kcal/mol (15193.1229 without restraints) Performing minimization step: 979. Total energy = 15193.1566 kcal/mol (15182.9320 without restraints) Performing minimization step: 980. Total energy = 15182.9779 kcal/mol (15172.7564 without restraints) Performing minimization step: 981. Total energy = 15172.8156 kcal/mol (15162.5973 without restraints) Performing minimization step: 982. Total energy = 15162.6683 kcal/mol (15152.4532 without restraints) Performing minimization step: 983. Total energy = 15152.5370 kcal/mol (15142.3251 without restraints) Performing minimization step: 984. Total energy = 15142.4211 kcal/mol (15132.2122 without restraints) Performing minimization step: 985. Total energy = 15132.3214 kcal/mol (15122.1157 without restraints) Performing minimization step: 986. Total energy = 15122.2361 kcal/mol (15112.0335 without restraints) Performing minimization step: 987. Total energy = 15112.1670 kcal/mol (15101.9677 without restraints) Performing minimization step: 988. Total energy = 15102.1131 kcal/mol (15091.9167 without restraints) Performing minimization step: 989. Total energy = 15092.0748 kcal/mol (15081.8817 without restraints) Performing minimization step: 990. Total energy = 15082.0516 kcal/mol (15071.8615 without restraints) Performing minimization step: 991. Total energy = 15072.0440 kcal/mol (15061.8572 without restraints) Performing minimization step: 992. Total energy = 15062.0519 kcal/mol (15051.8681 without restraints) Performing minimization step: 993. Total energy = 15052.0744 kcal/mol (15041.8937 without restraints) Performing minimization step: 994. Total energy = 15042.1126 kcal/mol (15031.9351 without restraints) Performing minimization step: 995. Total energy = 15032.1659 kcal/mol (15021.9915 without restraints) Performing minimization step: 996. Total energy = 15022.2343 kcal/mol (15012.0629 without restraints) Performing minimization step: 997. Total energy = 15012.3180 kcal/mol (15002.1498 without restraints) Performing minimization step: 998. Total energy = 15002.4164 kcal/mol (14992.2513 without restraints) Performing minimization step: 999. Total energy = 14992.5300 kcal/mol (14982.3679 without restraints) Performing minimization step: 1000. Total energy = 14982.6589 kcal/mol (14972.4999 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 14972.8021 kcal/mol (14962.6462 without restraints) Performing minimization step: 1002. Total energy = 14962.9602 kcal/mol (14952.8073 without restraints) Performing minimization step: 1003. Total energy = 14953.1330 kcal/mol (14942.9834 without restraints) Performing minimization step: 1004. Total energy = 14943.3215 kcal/mol (14933.1750 without restraints) Performing minimization step: 1005. Total energy = 14933.5249 kcal/mol (14923.3814 without restraints) Performing minimization step: 1006. Total energy = 14923.7426 kcal/mol (14913.6022 without restraints) Performing minimization step: 1007. Total energy = 14913.9748 kcal/mol (14903.8374 without restraints) Performing minimization step: 1008. Total energy = 14904.2218 kcal/mol (14894.0875 without restraints) Performing minimization step: 1009. Total energy = 14894.4837 kcal/mol (14884.3524 without restraints) Performing minimization step: 1010. Total energy = 14884.7606 kcal/mol (14874.6324 without restraints) Performing minimization step: 1011. Total energy = 14875.0519 kcal/mol (14864.9267 without restraints) Performing minimization step: 1012. Total energy = 14865.3575 kcal/mol (14855.2353 without restraints) Performing minimization step: 1013. Total energy = 14855.6777 kcal/mol (14845.5587 without restraints) Performing minimization step: 1014. Total energy = 14846.0123 kcal/mol (14835.8962 without restraints) Performing minimization step: 1015. Total energy = 14836.3615 kcal/mol (14826.2485 without restraints) Performing minimization step: 1016. Total energy = 14826.7252 kcal/mol (14816.6152 without restraints) Performing minimization step: 1017. Total energy = 14817.1031 kcal/mol (14806.9961 without restraints) Performing minimization step: 1018. Total energy = 14807.4952 kcal/mol (14797.3913 without restraints) Performing minimization step: 1019. Total energy = 14797.9016 kcal/mol (14787.8006 without restraints) Performing minimization step: 1020. Total energy = 14788.3219 kcal/mol (14778.2240 without restraints) Performing minimization step: 1021. Total energy = 14778.7571 kcal/mol (14768.6622 without restraints) Performing minimization step: 1022. Total energy = 14769.2065 kcal/mol (14759.1146 without restraints) Performing minimization step: 1023. Total energy = 14759.6699 kcal/mol (14749.5810 without restraints) Performing minimization step: 1024. Total energy = 14750.1473 kcal/mol (14740.0614 without restraints) Performing minimization step: 1025. Total energy = 14740.6389 kcal/mol (14730.5561 without restraints) Performing minimization step: 1026. Total energy = 14731.1441 kcal/mol (14721.0642 without restraints) Performing minimization step: 1027. Total energy = 14721.6636 kcal/mol (14711.5867 without restraints) Performing minimization step: 1028. Total energy = 14712.1966 kcal/mol (14702.1228 without restraints) Performing minimization step: 1029. Total energy = 14702.7441 kcal/mol (14692.6732 without restraints) Performing minimization step: 1030. Total energy = 14693.3054 kcal/mol (14683.2375 without restraints) Performing minimization step: 1031. Total energy = 14683.8802 kcal/mol (14673.8153 without restraints) Performing minimization step: 1032. Total energy = 14674.4694 kcal/mol (14664.4075 without restraints) Performing minimization step: 1033. Total energy = 14665.0720 kcal/mol (14655.0131 without restraints) Performing minimization step: 1034. Total energy = 14655.6882 kcal/mol (14645.6322 without restraints) Performing minimization step: 1035. Total energy = 14646.3181 kcal/mol (14636.2648 without restraints) Performing minimization step: 1036. Total energy = 14636.9614 kcal/mol (14626.9113 without restraints) Performing minimization step: 1037. Total energy = 14627.6190 kcal/mol (14617.5719 without restraints) Performing minimization step: 1038. Total energy = 14618.2902 kcal/mol (14608.2461 without restraints) Performing minimization step: 1039. Total energy = 14608.9749 kcal/mol (14598.9337 without restraints) Performing minimization step: 1040. Total energy = 14599.6735 kcal/mol (14589.6352 without restraints) Performing minimization step: 1041. Total energy = 14590.3852 kcal/mol (14580.3499 without restraints) Performing minimization step: 1042. Total energy = 14581.1104 kcal/mol (14571.0780 without restraints) Performing minimization step: 1043. Total energy = 14571.8489 kcal/mol (14561.8195 without restraints) Performing minimization step: 1044. Total energy = 14562.6013 kcal/mol (14552.5748 without restraints) Performing minimization step: 1045. Total energy = 14553.3665 kcal/mol (14543.3430 without restraints) Performing minimization step: 1046. Total energy = 14544.1454 kcal/mol (14534.1248 without restraints) Performing minimization step: 1047. Total energy = 14534.9373 kcal/mol (14524.9196 without restraints) Performing minimization step: 1048. Total energy = 14525.7425 kcal/mol (14515.7277 without restraints) Performing minimization step: 1049. Total energy = 14516.5614 kcal/mol (14506.5495 without restraints) Performing minimization step: 1050. Total energy = 14507.3936 kcal/mol (14497.3847 without restraints) Performing minimization step: 1051. Total energy = 14498.2390 kcal/mol (14488.2332 without restraints) Performing minimization step: 1052. Total energy = 14489.0971 kcal/mol (14479.0940 without restraints) Performing minimization step: 1053. Total energy = 14479.9686 kcal/mol (14469.9684 without restraints) Performing minimization step: 1054. Total energy = 14470.8532 kcal/mol (14460.8559 without restraints) Performing minimization step: 1055. Total energy = 14461.7506 kcal/mol (14451.7562 without restraints) Performing minimization step: 1056. Total energy = 14452.6612 kcal/mol (14442.6697 without restraints) Performing minimization step: 1057. Total energy = 14443.5849 kcal/mol (14433.5963 without restraints) Performing minimization step: 1058. Total energy = 14434.5221 kcal/mol (14424.5364 without restraints) Performing minimization step: 1059. Total energy = 14425.4716 kcal/mol (14415.4888 without restraints) Performing minimization step: 1060. Total energy = 14416.4339 kcal/mol (14406.4540 without restraints) Performing minimization step: 1061. Total energy = 14407.4091 kcal/mol (14397.4322 without restraints) Performing minimization step: 1062. Total energy = 14398.3975 kcal/mol (14388.4234 without restraints) Performing minimization step: 1063. Total energy = 14389.3987 kcal/mol (14379.4274 without restraints) Performing minimization step: 1064. Total energy = 14380.4125 kcal/mol (14370.4439 without restraints) Performing minimization step: 1065. Total energy = 14371.4388 kcal/mol (14361.4732 without restraints) Performing minimization step: 1066. Total energy = 14362.4785 kcal/mol (14352.5157 without restraints) Performing minimization step: 1067. Total energy = 14353.5309 kcal/mol (14343.5712 without restraints) Performing minimization step: 1068. Total energy = 14344.5956 kcal/mol (14334.6386 without restraints) Performing minimization step: 1069. Total energy = 14335.6728 kcal/mol (14325.7188 without restraints) Performing minimization step: 1070. Total energy = 14326.7627 kcal/mol (14316.8115 without restraints) Performing minimization step: 1071. Total energy = 14317.8655 kcal/mol (14307.9172 without restraints) Performing minimization step: 1072. Total energy = 14308.9806 kcal/mol (14299.0351 without restraints) Performing minimization step: 1073. Total energy = 14300.1079 kcal/mol (14290.1653 without restraints) Performing minimization step: 1074. Total energy = 14291.2480 kcal/mol (14281.3082 without restraints) Performing minimization step: 1075. Total energy = 14282.4004 kcal/mol (14272.4635 without restraints) Performing minimization step: 1076. Total energy = 14273.5652 kcal/mol (14263.6309 without restraints) Performing minimization step: 1077. Total energy = 14264.7425 kcal/mol (14254.8112 without restraints) Performing minimization step: 1078. Total energy = 14255.9322 kcal/mol (14246.0037 without restraints) Performing minimization step: 1079. Total energy = 14247.1342 kcal/mol (14237.2086 without restraints) Performing minimization step: 1080. Total energy = 14238.3490 kcal/mol (14228.4262 without restraints) Performing minimization step: 1081. Total energy = 14229.5756 kcal/mol (14219.6555 without restraints) Performing minimization step: 1082. Total energy = 14220.8144 kcal/mol (14210.8972 without restraints) Performing minimization step: 1083. Total energy = 14212.0657 kcal/mol (14202.1516 without restraints) Performing minimization step: 1084. Total energy = 14203.3293 kcal/mol (14193.4178 without restraints) Performing minimization step: 1085. Total energy = 14194.6053 kcal/mol (14184.6965 without restraints) Performing minimization step: 1086. Total energy = 14185.8935 kcal/mol (14175.9878 without restraints) Performing minimization step: 1087. Total energy = 14177.1935 kcal/mol (14167.2904 without restraints) Performing minimization step: 1088. Total energy = 14168.5056 kcal/mol (14158.6053 without restraints) Performing minimization step: 1089. Total energy = 14159.8294 kcal/mol (14149.9318 without restraints) Performing minimization step: 1090. Total energy = 14151.1657 kcal/mol (14141.2710 without restraints) Performing minimization step: 1091. Total energy = 14142.5133 kcal/mol (14132.6214 without restraints) Performing minimization step: 1092. Total energy = 14133.8730 kcal/mol (14123.9839 without restraints) Performing minimization step: 1093. Total energy = 14125.2447 kcal/mol (14115.3585 without restraints) Performing minimization step: 1094. Total energy = 14116.6287 kcal/mol (14106.7454 without restraints) Performing minimization step: 1095. Total energy = 14108.0245 kcal/mol (14098.1436 without restraints) Performing minimization step: 1096. Total energy = 14099.4318 kcal/mol (14089.5537 without restraints) Performing minimization step: 1097. Total energy = 14090.8510 kcal/mol (14080.9758 without restraints) Performing minimization step: 1098. Total energy = 14082.2825 kcal/mol (14072.4101 without restraints) Performing minimization step: 1099. Total energy = 14073.7254 kcal/mol (14063.8559 without restraints) Performing minimization step: 1100. Total energy = 14065.1805 kcal/mol (14055.3137 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 14056.6473 kcal/mol (14046.7833 without restraints) Performing minimization step: 1102. Total energy = 14048.1253 kcal/mol (14038.2640 without restraints) Performing minimization step: 1103. Total energy = 14039.6150 kcal/mol (14029.7565 without restraints) Performing minimization step: 1104. Total energy = 14031.1167 kcal/mol (14021.2611 without restraints) Performing minimization step: 1105. Total energy = 14022.6300 kcal/mol (14012.7772 without restraints) Performing minimization step: 1106. Total energy = 14014.1550 kcal/mol (14004.3047 without restraints) Performing minimization step: 1107. Total energy = 14005.6915 kcal/mol (13995.8440 without restraints) Performing minimization step: 1108. Total energy = 13997.2396 kcal/mol (13987.3949 without restraints) Performing minimization step: 1109. Total energy = 13988.7988 kcal/mol (13978.9567 without restraints) Performing minimization step: 1110. Total energy = 13980.3695 kcal/mol (13970.5303 without restraints) Performing minimization step: 1111. Total energy = 13971.9520 kcal/mol (13962.1155 without restraints) Performing minimization step: 1112. Total energy = 13963.5460 kcal/mol (13953.7123 without restraints) Performing minimization step: 1113. Total energy = 13955.1512 kcal/mol (13945.3203 without restraints) Performing minimization step: 1114. Total energy = 13946.7680 kcal/mol (13936.9398 without restraints) Performing minimization step: 1115. Total energy = 13938.3961 kcal/mol (13928.5706 without restraints) Performing minimization step: 1116. Total energy = 13930.0351 kcal/mol (13920.2122 without restraints) Performing minimization step: 1117. Total energy = 13921.6856 kcal/mol (13911.8653 without restraints) Performing minimization step: 1118. Total energy = 13913.3474 kcal/mol (13903.5301 without restraints) Performing minimization step: 1119. Total energy = 13905.0211 kcal/mol (13895.2065 without restraints) Performing minimization step: 1120. Total energy = 13896.7062 kcal/mol (13886.8945 without restraints) Performing minimization step: 1121. Total energy = 13888.4025 kcal/mol (13878.5932 without restraints) Performing minimization step: 1122. Total energy = 13880.1093 kcal/mol (13870.3029 without restraints) Performing minimization step: 1123. Total energy = 13871.8277 kcal/mol (13862.0240 without restraints) Performing minimization step: 1124. Total energy = 13863.5571 kcal/mol (13853.7561 without restraints) Performing minimization step: 1125. Total energy = 13855.2976 kcal/mol (13845.4992 without restraints) Performing minimization step: 1126. Total energy = 13847.0490 kcal/mol (13837.2533 without restraints) Performing minimization step: 1127. Total energy = 13838.8115 kcal/mol (13829.0186 without restraints) Performing minimization step: 1128. Total energy = 13830.5850 kcal/mol (13820.7948 without restraints) Performing minimization step: 1129. Total energy = 13822.3695 kcal/mol (13812.5820 without restraints) Performing minimization step: 1130. Total energy = 13814.1651 kcal/mol (13804.3803 without restraints) Performing minimization step: 1131. Total energy = 13805.9720 kcal/mol (13796.1899 without restraints) Performing minimization step: 1132. Total energy = 13797.7898 kcal/mol (13788.0104 without restraints) Performing minimization step: 1133. Total energy = 13789.6183 kcal/mol (13779.8416 without restraints) Performing minimization step: 1134. Total energy = 13781.4577 kcal/mol (13771.6836 without restraints) Performing minimization step: 1135. Total energy = 13773.3084 kcal/mol (13763.5371 without restraints) Performing minimization step: 1136. Total energy = 13765.1693 kcal/mol (13755.4007 without restraints) Performing minimization step: 1137. Total energy = 13757.0411 kcal/mol (13747.2752 without restraints) Performing minimization step: 1138. Total energy = 13748.9241 kcal/mol (13739.1607 without restraints) Performing minimization step: 1139. Total energy = 13740.8179 kcal/mol (13731.0573 without restraints) Performing minimization step: 1140. Total energy = 13732.7224 kcal/mol (13722.9644 without restraints) Performing minimization step: 1141. Total energy = 13724.6369 kcal/mol (13714.8817 without restraints) Performing minimization step: 1142. Total energy = 13716.5633 kcal/mol (13706.8107 without restraints) Performing minimization step: 1143. Total energy = 13708.5001 kcal/mol (13698.7501 without restraints) Performing minimization step: 1144. Total energy = 13700.4471 kcal/mol (13690.6997 without restraints) Performing minimization step: 1145. Total energy = 13692.4047 kcal/mol (13682.6601 without restraints) Performing minimization step: 1146. Total energy = 13684.3733 kcal/mol (13674.6315 without restraints) Performing minimization step: 1147. Total energy = 13676.3530 kcal/mol (13666.6137 without restraints) Performing minimization step: 1148. Total energy = 13668.3426 kcal/mol (13658.6059 without restraints) Performing minimization step: 1149. Total energy = 13660.3429 kcal/mol (13650.6089 without restraints) Performing minimization step: 1150. Total energy = 13652.3537 kcal/mol (13642.6224 without restraints) Performing minimization step: 1151. Total energy = 13644.3750 kcal/mol (13634.6463 without restraints) Performing minimization step: 1152. Total energy = 13636.4070 kcal/mol (13626.6811 without restraints) Performing minimization step: 1153. Total energy = 13628.4492 kcal/mol (13618.7259 without restraints) Performing minimization step: 1154. Total energy = 13620.5021 kcal/mol (13610.7813 without restraints) Performing minimization step: 1155. Total energy = 13612.5654 kcal/mol (13602.8473 without restraints) Performing minimization step: 1156. Total energy = 13604.6393 kcal/mol (13594.9239 without restraints) Performing minimization step: 1157. Total energy = 13596.7233 kcal/mol (13587.0105 without restraints) Performing minimization step: 1158. Total energy = 13588.8177 kcal/mol (13579.1075 without restraints) Performing minimization step: 1159. Total energy = 13580.9223 kcal/mol (13571.2148 without restraints) Performing minimization step: 1160. Total energy = 13573.0374 kcal/mol (13563.3324 without restraints) Performing minimization step: 1161. Total energy = 13565.1629 kcal/mol (13555.4606 without restraints) Performing minimization step: 1162. Total energy = 13557.2986 kcal/mol (13547.5991 without restraints) Performing minimization step: 1163. Total energy = 13549.4446 kcal/mol (13539.7475 without restraints) Performing minimization step: 1164. Total energy = 13541.6010 kcal/mol (13531.9066 without restraints) Performing minimization step: 1165. Total energy = 13533.7675 kcal/mol (13524.0757 without restraints) Performing minimization step: 1166. Total energy = 13525.9442 kcal/mol (13516.2553 without restraints) Performing minimization step: 1167. Total energy = 13518.1308 kcal/mol (13508.4440 without restraints) Performing minimization step: 1168. Total energy = 13510.3273 kcal/mol (13500.6433 without restraints) Performing minimization step: 1169. Total energy = 13502.5348 kcal/mol (13492.8534 without restraints) Performing minimization step: 1170. Total energy = 13494.7520 kcal/mol (13485.0731 without restraints) Performing minimization step: 1171. Total energy = 13486.9787 kcal/mol (13477.3026 without restraints) Performing minimization step: 1172. Total energy = 13479.2159 kcal/mol (13469.5423 without restraints) Performing minimization step: 1173. Total energy = 13471.4629 kcal/mol (13461.7920 without restraints) Performing minimization step: 1174. Total energy = 13463.7205 kcal/mol (13454.0520 without restraints) Performing minimization step: 1175. Total energy = 13455.9875 kcal/mol (13446.3217 without restraints) Performing minimization step: 1176. Total energy = 13448.2649 kcal/mol (13438.6018 without restraints) Performing minimization step: 1177. Total energy = 13440.5521 kcal/mol (13430.8915 without restraints) Performing minimization step: 1178. Total energy = 13432.8496 kcal/mol (13423.1917 without restraints) Performing minimization step: 1179. Total energy = 13425.1561 kcal/mol (13415.5008 without restraints) Performing minimization step: 1180. Total energy = 13417.4731 kcal/mol (13407.8204 without restraints) Performing minimization step: 1181. Total energy = 13409.8005 kcal/mol (13400.1503 without restraints) Performing minimization step: 1182. Total energy = 13402.1374 kcal/mol (13392.4898 without restraints) Performing minimization step: 1183. Total energy = 13394.4842 kcal/mol (13384.8392 without restraints) Performing minimization step: 1184. Total energy = 13386.8407 kcal/mol (13377.1983 without restraints) Performing minimization step: 1185. Total energy = 13379.2072 kcal/mol (13369.5674 without restraints) Performing minimization step: 1186. Total energy = 13371.5832 kcal/mol (13361.9460 without restraints) Performing minimization step: 1187. Total energy = 13363.9691 kcal/mol (13354.3346 without restraints) Performing minimization step: 1188. Total energy = 13356.3647 kcal/mol (13346.7326 without restraints) Performing minimization step: 1189. Total energy = 13348.7702 kcal/mol (13339.1407 without restraints) Performing minimization step: 1190. Total energy = 13341.1851 kcal/mol (13331.5582 without restraints) Performing minimization step: 1191. Total energy = 13333.6095 kcal/mol (13323.9851 without restraints) Performing minimization step: 1192. Total energy = 13326.0440 kcal/mol (13316.4222 without restraints) Performing minimization step: 1193. Total energy = 13318.4880 kcal/mol (13308.8688 without restraints) Performing minimization step: 1194. Total energy = 13310.9414 kcal/mol (13301.3246 without restraints) Performing minimization step: 1195. Total energy = 13303.4047 kcal/mol (13293.7906 without restraints) Performing minimization step: 1196. Total energy = 13295.8780 kcal/mol (13286.2664 without restraints) Performing minimization step: 1197. Total energy = 13288.3605 kcal/mol (13278.7515 without restraints) Performing minimization step: 1198. Total energy = 13280.8524 kcal/mol (13271.2458 without restraints) Performing minimization step: 1199. Total energy = 13273.3542 kcal/mol (13263.7503 without restraints) Performing minimization step: 1200. Total energy = 13265.8652 kcal/mol (13256.2638 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 13258.3856 kcal/mol (13248.7868 without restraints) Performing minimization step: 1202. Total energy = 13250.9157 kcal/mol (13241.3195 without restraints) Performing minimization step: 1203. Total energy = 13243.4551 kcal/mol (13233.8613 without restraints) Performing minimization step: 1204. Total energy = 13236.0042 kcal/mol (13226.4130 without restraints) Performing minimization step: 1205. Total energy = 13228.5624 kcal/mol (13218.9737 without restraints) Performing minimization step: 1206. Total energy = 13221.1300 kcal/mol (13211.5439 without restraints) Performing minimization step: 1207. Total energy = 13213.7073 kcal/mol (13204.1237 without restraints) Performing minimization step: 1208. Total energy = 13206.2938 kcal/mol (13196.7127 without restraints) Performing minimization step: 1209. Total energy = 13198.8899 kcal/mol (13189.3114 without restraints) Performing minimization step: 1210. Total energy = 13191.4953 kcal/mol (13181.9193 without restraints) Performing minimization step: 1211. Total energy = 13184.1097 kcal/mol (13174.5362 without restraints) Performing minimization step: 1212. Total energy = 13176.7332 kcal/mol (13167.1622 without restraints) Performing minimization step: 1213. Total energy = 13169.3663 kcal/mol (13159.7980 without restraints) Performing minimization step: 1214. Total energy = 13162.0088 kcal/mol (13152.4429 without restraints) Performing minimization step: 1215. Total energy = 13154.6605 kcal/mol (13145.0973 without restraints) Performing minimization step: 1216. Total energy = 13147.3216 kcal/mol (13137.7607 without restraints) Performing minimization step: 1217. Total energy = 13139.9915 kcal/mol (13130.4332 without restraints) Performing minimization step: 1218. Total energy = 13132.6708 kcal/mol (13123.1152 without restraints) Performing minimization step: 1219. Total energy = 13125.3586 kcal/mol (13115.8053 without restraints) Performing minimization step: 1220. Total energy = 13118.0560 kcal/mol (13108.5053 without restraints) Performing minimization step: 1221. Total energy = 13110.7625 kcal/mol (13101.2143 without restraints) Performing minimization step: 1222. Total energy = 13103.4785 kcal/mol (13093.9328 without restraints) Performing minimization step: 1223. Total energy = 13096.2036 kcal/mol (13086.6603 without restraints) Performing minimization step: 1224. Total energy = 13088.9372 kcal/mol (13079.3964 without restraints) Performing minimization step: 1225. Total energy = 13081.6799 kcal/mol (13072.1416 without restraints) Performing minimization step: 1226. Total energy = 13074.4321 kcal/mol (13064.8965 without restraints) Performing minimization step: 1227. Total energy = 13067.1931 kcal/mol (13057.6599 without restraints) Performing minimization step: 1228. Total energy = 13059.9631 kcal/mol (13050.4325 without restraints) Performing minimization step: 1229. Total energy = 13052.7421 kcal/mol (13043.2139 without restraints) Performing minimization step: 1230. Total energy = 13045.5297 kcal/mol (13036.0040 without restraints) Performing minimization step: 1231. Total energy = 13038.3262 kcal/mol (13028.8030 without restraints) Performing minimization step: 1232. Total energy = 13031.1321 kcal/mol (13021.6115 without restraints) Performing minimization step: 1233. Total energy = 13023.9470 kcal/mol (13014.4289 without restraints) Performing minimization step: 1234. Total energy = 13016.7708 kcal/mol (13007.2550 without restraints) Performing minimization step: 1235. Total energy = 13009.6033 kcal/mol (13000.0898 without restraints) Performing minimization step: 1236. Total energy = 13002.4447 kcal/mol (12992.9339 without restraints) Performing minimization step: 1237. Total energy = 12995.2949 kcal/mol (12985.7866 without restraints) Performing minimization step: 1238. Total energy = 12988.1543 kcal/mol (12978.6484 without restraints) Performing minimization step: 1239. Total energy = 12981.0221 kcal/mol (12971.5188 without restraints) Performing minimization step: 1240. Total energy = 12973.8985 kcal/mol (12964.3975 without restraints) Performing minimization step: 1241. Total energy = 12966.7837 kcal/mol (12957.2853 without restraints) Performing minimization step: 1242. Total energy = 12959.6782 kcal/mol (12950.1823 without restraints) Performing minimization step: 1243. Total energy = 12952.5813 kcal/mol (12943.0879 without restraints) Performing minimization step: 1244. Total energy = 12945.4926 kcal/mol (12936.0016 without restraints) Performing minimization step: 1245. Total energy = 12938.4135 kcal/mol (12928.9250 without restraints) Performing minimization step: 1246. Total energy = 12931.3424 kcal/mol (12921.8564 without restraints) Performing minimization step: 1247. Total energy = 12924.2805 kcal/mol (12914.7969 without restraints) Performing minimization step: 1248. Total energy = 12917.2267 kcal/mol (12907.7456 without restraints) Performing minimization step: 1249. Total energy = 12910.1820 kcal/mol (12900.7033 without restraints) Performing minimization step: 1250. Total energy = 12903.1461 kcal/mol (12893.6700 without restraints) Performing minimization step: 1251. Total energy = 12896.1189 kcal/mol (12886.6450 without restraints) Performing minimization step: 1252. Total energy = 12889.0999 kcal/mol (12879.6286 without restraints) Performing minimization step: 1253. Total energy = 12882.0896 kcal/mol (12872.6209 without restraints) Performing minimization step: 1254. Total energy = 12875.0880 kcal/mol (12865.6216 without restraints) Performing minimization step: 1255. Total energy = 12868.0946 kcal/mol (12858.6307 without restraints) Performing minimization step: 1256. Total energy = 12861.1098 kcal/mol (12851.6482 without restraints) Performing minimization step: 1257. Total energy = 12854.1335 kcal/mol (12844.6745 without restraints) Performing minimization step: 1258. Total energy = 12847.1659 kcal/mol (12837.7094 without restraints) Performing minimization step: 1259. Total energy = 12840.2067 kcal/mol (12830.7527 without restraints) Performing minimization step: 1260. Total energy = 12833.2558 kcal/mol (12823.8040 without restraints) Performing minimization step: 1261. Total energy = 12826.3133 kcal/mol (12816.8640 without restraints) Performing minimization step: 1262. Total energy = 12819.3796 kcal/mol (12809.9328 without restraints) Performing minimization step: 1263. Total energy = 12812.4548 kcal/mol (12803.0105 without restraints) Performing minimization step: 1264. Total energy = 12805.5381 kcal/mol (12796.0962 without restraints) Performing minimization step: 1265. Total energy = 12798.6298 kcal/mol (12789.1906 without restraints) Performing minimization step: 1266. Total energy = 12791.7299 kcal/mol (12782.2929 without restraints) Performing minimization step: 1267. Total energy = 12784.8382 kcal/mol (12775.4038 without restraints) Performing minimization step: 1268. Total energy = 12777.9548 kcal/mol (12768.5227 without restraints) Performing minimization step: 1269. Total energy = 12771.0798 kcal/mol (12761.6500 without restraints) Performing minimization step: 1270. Total energy = 12764.2131 kcal/mol (12754.7857 without restraints) Performing minimization step: 1271. Total energy = 12757.3549 kcal/mol (12747.9300 without restraints) Performing minimization step: 1272. Total energy = 12750.5050 kcal/mol (12741.0825 without restraints) Performing minimization step: 1273. Total energy = 12743.6630 kcal/mol (12734.2430 without restraints) Performing minimization step: 1274. Total energy = 12736.8295 kcal/mol (12727.4119 without restraints) Performing minimization step: 1275. Total energy = 12730.0045 kcal/mol (12720.5893 without restraints) Performing minimization step: 1276. Total energy = 12723.1873 kcal/mol (12713.7745 without restraints) Performing minimization step: 1277. Total energy = 12716.3777 kcal/mol (12706.9674 without restraints) Performing minimization step: 1278. Total energy = 12709.5768 kcal/mol (12700.1689 without restraints) Performing minimization step: 1279. Total energy = 12702.7843 kcal/mol (12693.3788 without restraints) Performing minimization step: 1280. Total energy = 12696.0010 kcal/mol (12686.5979 without restraints) Performing minimization step: 1281. Total energy = 12689.2245 kcal/mol (12679.8238 without restraints) Performing minimization step: 1282. Total energy = 12682.4565 kcal/mol (12673.0582 without restraints) Performing minimization step: 1283. Total energy = 12675.6969 kcal/mol (12666.3011 without restraints) Performing minimization step: 1284. Total energy = 12668.9451 kcal/mol (12659.5516 without restraints) Performing minimization step: 1285. Total energy = 12662.2011 kcal/mol (12652.8101 without restraints) Performing minimization step: 1286. Total energy = 12655.4654 kcal/mol (12646.0768 without restraints) Performing minimization step: 1287. Total energy = 12648.7380 kcal/mol (12639.3517 without restraints) Performing minimization step: 1288. Total energy = 12642.0183 kcal/mol (12632.6345 without restraints) Performing minimization step: 1289. Total energy = 12635.3072 kcal/mol (12625.9258 without restraints) Performing minimization step: 1290. Total energy = 12628.6036 kcal/mol (12619.2245 without restraints) Performing minimization step: 1291. Total energy = 12621.9079 kcal/mol (12612.5313 without restraints) Performing minimization step: 1292. Total energy = 12615.2204 kcal/mol (12605.8463 without restraints) Performing minimization step: 1293. Total energy = 12608.5414 kcal/mol (12599.1696 without restraints) Performing minimization step: 1294. Total energy = 12601.8703 kcal/mol (12592.5008 without restraints) Performing minimization step: 1295. Total energy = 12595.2071 kcal/mol (12585.8401 without restraints) Performing minimization step: 1296. Total energy = 12588.5510 kcal/mol (12579.1863 without restraints) Performing minimization step: 1297. Total energy = 12581.9031 kcal/mol (12572.5408 without restraints) Performing minimization step: 1298. Total energy = 12575.2638 kcal/mol (12565.9039 without restraints) Performing minimization step: 1299. Total energy = 12568.6317 kcal/mol (12559.2742 without restraints) Performing minimization step: 1300. Total energy = 12562.0077 kcal/mol (12552.6526 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 12555.3916 kcal/mol (12546.0389 without restraints) Performing minimization step: 1302. Total energy = 12548.7831 kcal/mol (12539.4327 without restraints) Performing minimization step: 1303. Total energy = 12542.1827 kcal/mol (12532.8347 without restraints) Performing minimization step: 1304. Total energy = 12535.5901 kcal/mol (12526.2445 without restraints) Performing minimization step: 1305. Total energy = 12529.0051 kcal/mol (12519.6619 without restraints) Performing minimization step: 1306. Total energy = 12522.4284 kcal/mol (12513.0876 without restraints) Performing minimization step: 1307. Total energy = 12515.8589 kcal/mol (12506.5204 without restraints) Performing minimization step: 1308. Total energy = 12509.2973 kcal/mol (12499.9613 without restraints) Performing minimization step: 1309. Total energy = 12502.7440 kcal/mol (12493.4102 without restraints) Performing minimization step: 1310. Total energy = 12496.1981 kcal/mol (12486.8667 without restraints) Performing minimization step: 1311. Total energy = 12489.6598 kcal/mol (12480.3308 without restraints) Performing minimization step: 1312. Total energy = 12483.1293 kcal/mol (12473.8027 without restraints) Performing minimization step: 1313. Total energy = 12476.6067 kcal/mol (12467.2825 without restraints) Performing minimization step: 1314. Total energy = 12470.0918 kcal/mol (12460.7699 without restraints) Performing minimization step: 1315. Total energy = 12463.5844 kcal/mol (12454.2648 without restraints) Performing minimization step: 1316. Total energy = 12457.0850 kcal/mol (12447.7678 without restraints) Performing minimization step: 1317. Total energy = 12450.5933 kcal/mol (12441.2785 without restraints) Performing minimization step: 1318. Total energy = 12444.1085 kcal/mol (12434.7961 without restraints) Performing minimization step: 1319. Total energy = 12437.6319 kcal/mol (12428.3218 without restraints) Performing minimization step: 1320. Total energy = 12431.1625 kcal/mol (12421.8547 without restraints) Performing minimization step: 1321. Total energy = 12424.7007 kcal/mol (12415.3953 without restraints) Performing minimization step: 1322. Total energy = 12418.2464 kcal/mol (12408.9433 without restraints) Performing minimization step: 1323. Total energy = 12411.8001 kcal/mol (12402.4995 without restraints) Performing minimization step: 1324. Total energy = 12405.3614 kcal/mol (12396.0631 without restraints) Performing minimization step: 1325. Total energy = 12398.9301 kcal/mol (12389.6342 without restraints) Performing minimization step: 1326. Total energy = 12392.5063 kcal/mol (12383.2126 without restraints) Performing minimization step: 1327. Total energy = 12386.0894 kcal/mol (12376.7981 without restraints) Performing minimization step: 1328. Total energy = 12379.6804 kcal/mol (12370.3913 without restraints) Performing minimization step: 1329. Total energy = 12373.2786 kcal/mol (12363.9919 without restraints) Performing minimization step: 1330. Total energy = 12366.8849 kcal/mol (12357.6006 without restraints) Performing minimization step: 1331. Total energy = 12360.4984 kcal/mol (12351.2165 without restraints) Performing minimization step: 1332. Total energy = 12354.1190 kcal/mol (12344.8392 without restraints) Performing minimization step: 1333. Total energy = 12347.7472 kcal/mol (12338.4699 without restraints) Performing minimization step: 1334. Total energy = 12341.3826 kcal/mol (12332.1077 without restraints) Performing minimization step: 1335. Total energy = 12335.0260 kcal/mol (12325.7534 without restraints) Performing minimization step: 1336. Total energy = 12328.6765 kcal/mol (12319.4062 without restraints) Performing minimization step: 1337. Total energy = 12322.3342 kcal/mol (12313.0664 without restraints) Performing minimization step: 1338. Total energy = 12315.9993 kcal/mol (12306.7337 without restraints) Performing minimization step: 1339. Total energy = 12309.6721 kcal/mol (12300.4088 without restraints) Performing minimization step: 1340. Total energy = 12303.3518 kcal/mol (12294.0909 without restraints) Performing minimization step: 1341. Total energy = 12297.0391 kcal/mol (12287.7805 without restraints) Performing minimization step: 1342. Total energy = 12290.7335 kcal/mol (12281.4772 without restraints) Performing minimization step: 1343. Total energy = 12284.4354 kcal/mol (12275.1815 without restraints) Performing minimization step: 1344. Total energy = 12278.1446 kcal/mol (12268.8930 without restraints) Performing minimization step: 1345. Total energy = 12271.8615 kcal/mol (12262.6122 without restraints) Performing minimization step: 1346. Total energy = 12265.5852 kcal/mol (12256.3382 without restraints) Performing minimization step: 1347. Total energy = 12259.3161 kcal/mol (12250.0715 without restraints) Performing minimization step: 1348. Total energy = 12253.0543 kcal/mol (12243.8120 without restraints) Performing minimization step: 1349. Total energy = 12246.7997 kcal/mol (12237.5596 without restraints) Performing minimization step: 1350. Total energy = 12240.5522 kcal/mol (12231.3145 without restraints) Performing minimization step: 1351. Total energy = 12234.3118 kcal/mol (12225.0764 without restraints) Performing minimization step: 1352. Total energy = 12228.0788 kcal/mol (12218.8457 without restraints) Performing minimization step: 1353. Total energy = 12221.8530 kcal/mol (12212.6222 without restraints) Performing minimization step: 1354. Total energy = 12215.6344 kcal/mol (12206.4059 without restraints) Performing minimization step: 1355. Total energy = 12209.4227 kcal/mol (12200.1966 without restraints) Performing minimization step: 1356. Total energy = 12203.2187 kcal/mol (12193.9948 without restraints) Performing minimization step: 1357. Total energy = 12197.0213 kcal/mol (12187.7997 without restraints) Performing minimization step: 1358. Total energy = 12190.8311 kcal/mol (12181.6119 without restraints) Performing minimization step: 1359. Total energy = 12184.6479 kcal/mol (12175.4311 without restraints) Performing minimization step: 1360. Total energy = 12178.4722 kcal/mol (12169.2575 without restraints) Performing minimization step: 1361. Total energy = 12172.3039 kcal/mol (12163.0915 without restraints) Performing minimization step: 1362. Total energy = 12166.1418 kcal/mol (12156.9318 without restraints) Performing minimization step: 1363. Total energy = 12159.9870 kcal/mol (12150.7793 without restraints) Performing minimization step: 1364. Total energy = 12153.8395 kcal/mol (12144.6341 without restraints) Performing minimization step: 1365. Total energy = 12147.6987 kcal/mol (12138.4955 without restraints) Performing minimization step: 1366. Total energy = 12141.5646 kcal/mol (12132.3637 without restraints) Performing minimization step: 1367. Total energy = 12135.4378 kcal/mol (12126.2393 without restraints) Performing minimization step: 1368. Total energy = 12129.3177 kcal/mol (12120.1214 without restraints) Performing minimization step: 1369. Total energy = 12123.2046 kcal/mol (12114.0104 without restraints) Performing minimization step: 1370. Total energy = 12117.0995 kcal/mol (12107.9079 without restraints) Performing minimization step: 1371. Total energy = 12111.0008 kcal/mol (12101.8114 without restraints) Performing minimization step: 1372. Total energy = 12104.9087 kcal/mol (12095.7216 without restraints) Performing minimization step: 1373. Total energy = 12098.8239 kcal/mol (12089.6391 without restraints) Performing minimization step: 1374. Total energy = 12092.7458 kcal/mol (12083.5633 without restraints) Performing minimization step: 1375. Total energy = 12086.6744 kcal/mol (12077.4941 without restraints) Performing minimization step: 1376. Total energy = 12080.6105 kcal/mol (12071.4327 without restraints) Performing minimization step: 1377. Total energy = 12074.5535 kcal/mol (12065.3778 without restraints) Performing minimization step: 1378. Total energy = 12068.5031 kcal/mol (12059.3297 without restraints) Performing minimization step: 1379. Total energy = 12062.4594 kcal/mol (12053.2882 without restraints) Performing minimization step: 1380. Total energy = 12056.4227 kcal/mol (12047.2539 without restraints) Performing minimization step: 1381. Total energy = 12050.3926 kcal/mol (12041.2259 without restraints) Performing minimization step: 1382. Total energy = 12044.3696 kcal/mol (12035.2053 without restraints) Performing minimization step: 1383. Total energy = 12038.3532 kcal/mol (12029.1911 without restraints) Performing minimization step: 1384. Total energy = 12032.3438 kcal/mol (12023.1841 without restraints) Performing minimization step: 1385. Total energy = 12026.3411 kcal/mol (12017.1836 without restraints) Performing minimization step: 1386. Total energy = 12020.3453 kcal/mol (12011.1901 without restraints) Performing minimization step: 1387. Total energy = 12014.3559 kcal/mol (12005.2028 without restraints) Performing minimization step: 1388. Total energy = 12008.3733 kcal/mol (11999.2225 without restraints) Performing minimization step: 1389. Total energy = 12002.3976 kcal/mol (11993.2491 without restraints) Performing minimization step: 1390. Total energy = 11996.4282 kcal/mol (11987.2820 without restraints) Performing minimization step: 1391. Total energy = 11990.4658 kcal/mol (11981.3218 without restraints) Performing minimization step: 1392. Total energy = 11984.5101 kcal/mol (11975.3684 without restraints) Performing minimization step: 1393. Total energy = 11978.5613 kcal/mol (11969.4219 without restraints) Performing minimization step: 1394. Total energy = 11972.6190 kcal/mol (11963.4819 without restraints) Performing minimization step: 1395. Total energy = 11966.6835 kcal/mol (11957.5485 without restraints) Performing minimization step: 1396. Total energy = 11960.7544 kcal/mol (11951.6218 without restraints) Performing minimization step: 1397. Total energy = 11954.8324 kcal/mol (11945.7021 without restraints) Performing minimization step: 1398. Total energy = 11948.9167 kcal/mol (11939.7885 without restraints) Performing minimization step: 1399. Total energy = 11943.0075 kcal/mol (11933.8816 without restraints) Performing minimization step: 1400. Total energy = 11937.1049 kcal/mol (11927.9813 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 11931.2090 kcal/mol (11922.0877 without restraints) Performing minimization step: 1402. Total energy = 11925.3199 kcal/mol (11916.2008 without restraints) Performing minimization step: 1403. Total energy = 11919.4372 kcal/mol (11910.3204 without restraints) Performing minimization step: 1404. Total energy = 11913.5613 kcal/mol (11904.4467 without restraints) Performing minimization step: 1405. Total energy = 11907.6916 kcal/mol (11898.5792 without restraints) Performing minimization step: 1406. Total energy = 11901.8285 kcal/mol (11892.7182 without restraints) Performing minimization step: 1407. Total energy = 11895.9720 kcal/mol (11886.8642 without restraints) Performing minimization step: 1408. Total energy = 11890.1219 kcal/mol (11881.0163 without restraints) Performing minimization step: 1409. Total energy = 11884.2785 kcal/mol (11875.1751 without restraints) Performing minimization step: 1410. Total energy = 11878.4417 kcal/mol (11869.3408 without restraints) Performing minimization step: 1411. Total energy = 11872.6118 kcal/mol (11863.5129 without restraints) Performing minimization step: 1412. Total energy = 11866.7879 kcal/mol (11857.6912 without restraints) Performing minimization step: 1413. Total energy = 11860.9703 kcal/mol (11851.8759 without restraints) Performing minimization step: 1414. Total energy = 11855.1593 kcal/mol (11846.0671 without restraints) Performing minimization step: 1415. Total energy = 11849.3547 kcal/mol (11840.2647 without restraints) Performing minimization step: 1416. Total energy = 11843.5570 kcal/mol (11834.4693 without restraints) Performing minimization step: 1417. Total energy = 11837.7654 kcal/mol (11828.6799 without restraints) Performing minimization step: 1418. Total energy = 11831.9802 kcal/mol (11822.8969 without restraints) Performing minimization step: 1419. Total energy = 11826.2012 kcal/mol (11817.1202 without restraints) Performing minimization step: 1420. Total energy = 11820.4285 kcal/mol (11811.3496 without restraints) Performing minimization step: 1421. Total energy = 11814.6624 kcal/mol (11805.5859 without restraints) Performing minimization step: 1422. Total energy = 11808.9030 kcal/mol (11799.8286 without restraints) Performing minimization step: 1423. Total energy = 11803.1492 kcal/mol (11794.0770 without restraints) Performing minimization step: 1424. Total energy = 11797.4020 kcal/mol (11788.3321 without restraints) Performing minimization step: 1425. Total energy = 11791.6617 kcal/mol (11782.5941 without restraints) Performing minimization step: 1426. Total energy = 11785.9278 kcal/mol (11776.8625 without restraints) Performing minimization step: 1427. Total energy = 11780.1999 kcal/mol (11771.1367 without restraints) Performing minimization step: 1428. Total energy = 11774.4781 kcal/mol (11765.4171 without restraints) Performing minimization step: 1429. Total energy = 11768.7627 kcal/mol (11759.7039 without restraints) Performing minimization step: 1430. Total energy = 11763.0541 kcal/mol (11753.9976 without restraints) Performing minimization step: 1431. Total energy = 11757.3509 kcal/mol (11748.2966 without restraints) Performing minimization step: 1432. Total energy = 11751.6543 kcal/mol (11742.6021 without restraints) Performing minimization step: 1433. Total energy = 11745.9639 kcal/mol (11736.9140 without restraints) Performing minimization step: 1434. Total energy = 11740.2800 kcal/mol (11731.2323 without restraints) Performing minimization step: 1435. Total energy = 11734.6017 kcal/mol (11725.5561 without restraints) Performing minimization step: 1436. Total energy = 11728.9301 kcal/mol (11719.8869 without restraints) Performing minimization step: 1437. Total energy = 11723.2648 kcal/mol (11714.2238 without restraints) Performing minimization step: 1438. Total energy = 11717.6057 kcal/mol (11708.5668 without restraints) Performing minimization step: 1439. Total energy = 11711.9527 kcal/mol (11702.9160 without restraints) Performing minimization step: 1440. Total energy = 11706.3057 kcal/mol (11697.2714 without restraints) Performing minimization step: 1441. Total energy = 11700.6653 kcal/mol (11691.6330 without restraints) Performing minimization step: 1442. Total energy = 11695.0309 kcal/mol (11686.0009 without restraints) Performing minimization step: 1443. Total energy = 11689.4027 kcal/mol (11680.3750 without restraints) Performing minimization step: 1444. Total energy = 11683.7803 kcal/mol (11674.7545 without restraints) Performing minimization step: 1445. Total energy = 11678.1641 kcal/mol (11669.1406 without restraints) Performing minimization step: 1446. Total energy = 11672.5541 kcal/mol (11663.5329 without restraints) Performing minimization step: 1447. Total energy = 11666.9502 kcal/mol (11657.9310 without restraints) Performing minimization step: 1448. Total energy = 11661.3524 kcal/mol (11652.3356 without restraints) Performing minimization step: 1449. Total energy = 11655.7609 kcal/mol (11646.7461 without restraints) Performing minimization step: 1450. Total energy = 11650.1750 kcal/mol (11641.1626 without restraints) Performing minimization step: 1451. Total energy = 11644.5955 kcal/mol (11635.5853 without restraints) Performing minimization step: 1452. Total energy = 11639.0218 kcal/mol (11630.0137 without restraints) Performing minimization step: 1453. Total energy = 11633.4540 kcal/mol (11624.4481 without restraints) Performing minimization step: 1454. Total energy = 11627.8929 kcal/mol (11618.8893 without restraints) Performing minimization step: 1455. Total energy = 11622.3378 kcal/mol (11613.3364 without restraints) Performing minimization step: 1456. Total energy = 11616.7887 kcal/mol (11607.7895 without restraints) Performing minimization step: 1457. Total energy = 11611.2455 kcal/mol (11602.2483 without restraints) Performing minimization step: 1458. Total energy = 11605.7085 kcal/mol (11596.7135 without restraints) Performing minimization step: 1459. Total energy = 11600.1771 kcal/mol (11591.1844 without restraints) Performing minimization step: 1460. Total energy = 11594.6519 kcal/mol (11585.6614 without restraints) Performing minimization step: 1461. Total energy = 11589.1331 kcal/mol (11580.1449 without restraints) Performing minimization step: 1462. Total energy = 11583.6199 kcal/mol (11574.6338 without restraints) Performing minimization step: 1463. Total energy = 11578.1131 kcal/mol (11569.1291 without restraints) Performing minimization step: 1464. Total energy = 11572.6117 kcal/mol (11563.6299 without restraints) Performing minimization step: 1465. Total energy = 11567.1165 kcal/mol (11558.1371 without restraints) Performing minimization step: 1466. Total energy = 11561.6274 kcal/mol (11552.6502 without restraints) Performing minimization step: 1467. Total energy = 11556.1439 kcal/mol (11547.1688 without restraints) Performing minimization step: 1468. Total energy = 11550.6662 kcal/mol (11541.6930 without restraints) Performing minimization step: 1469. Total energy = 11545.1940 kcal/mol (11536.2232 without restraints) Performing minimization step: 1470. Total energy = 11539.7281 kcal/mol (11530.7595 without restraints) Performing minimization step: 1471. Total energy = 11534.2680 kcal/mol (11525.3015 without restraints) Performing minimization step: 1472. Total energy = 11528.8140 kcal/mol (11519.8497 without restraints) Performing minimization step: 1473. Total energy = 11523.3658 kcal/mol (11514.4036 without restraints) Performing minimization step: 1474. Total energy = 11517.9234 kcal/mol (11508.9634 without restraints) Performing minimization step: 1475. Total energy = 11512.4870 kcal/mol (11503.5291 without restraints) Performing minimization step: 1476. Total energy = 11507.0566 kcal/mol (11498.1009 without restraints) Performing minimization step: 1477. Total energy = 11501.6320 kcal/mol (11492.6785 without restraints) Performing minimization step: 1478. Total energy = 11496.2130 kcal/mol (11487.2617 without restraints) Performing minimization step: 1479. Total energy = 11490.7999 kcal/mol (11481.8508 without restraints) Performing minimization step: 1480. Total energy = 11485.3923 kcal/mol (11476.4454 without restraints) Performing minimization step: 1481. Total energy = 11479.9910 kcal/mol (11471.0462 without restraints) Performing minimization step: 1482. Total energy = 11474.5956 kcal/mol (11465.6532 without restraints) Performing minimization step: 1483. Total energy = 11469.2060 kcal/mol (11460.2655 without restraints) Performing minimization step: 1484. Total energy = 11463.8217 kcal/mol (11454.8834 without restraints) Performing minimization step: 1485. Total energy = 11458.4430 kcal/mol (11449.5067 without restraints) Performing minimization step: 1486. Total energy = 11453.0703 kcal/mol (11444.1363 without restraints) Performing minimization step: 1487. Total energy = 11447.7035 kcal/mol (11438.7718 without restraints) Performing minimization step: 1488. Total energy = 11442.3422 kcal/mol (11433.4125 without restraints) Performing minimization step: 1489. Total energy = 11436.9866 kcal/mol (11428.0591 without restraints) Performing minimization step: 1490. Total energy = 11431.6374 kcal/mol (11422.7120 without restraints) Performing minimization step: 1491. Total energy = 11426.2932 kcal/mol (11417.3700 without restraints) Performing minimization step: 1492. Total energy = 11420.9553 kcal/mol (11412.0343 without restraints) Performing minimization step: 1493. Total energy = 11415.6226 kcal/mol (11406.7038 without restraints) Performing minimization step: 1494. Total energy = 11410.2959 kcal/mol (11401.3792 without restraints) Performing minimization step: 1495. Total energy = 11404.9750 kcal/mol (11396.0602 without restraints) Performing minimization step: 1496. Total energy = 11399.6593 kcal/mol (11390.7470 without restraints) Performing minimization step: 1497. Total energy = 11394.3488 kcal/mol (11385.4385 without restraints) Performing minimization step: 1498. Total energy = 11389.0445 kcal/mol (11380.1364 without restraints) Performing minimization step: 1499. Total energy = 11383.7459 kcal/mol (11374.8399 without restraints) Performing minimization step: 1500. Total energy = 11378.4536 kcal/mol (11369.5498 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 11373.1661 kcal/mol (11364.2645 without restraints) Performing minimization step: 1502. Total energy = 11367.8842 kcal/mol (11358.9847 without restraints) Performing minimization step: 1503. Total energy = 11362.6083 kcal/mol (11353.7110 without restraints) Performing minimization step: 1504. Total energy = 11357.3378 kcal/mol (11348.4426 without restraints) Performing minimization step: 1505. Total energy = 11352.0728 kcal/mol (11343.1797 without restraints) Performing minimization step: 1506. Total energy = 11346.8133 kcal/mol (11337.9223 without restraints) Performing minimization step: 1507. Total energy = 11341.5596 kcal/mol (11332.6707 without restraints) Performing minimization step: 1508. Total energy = 11336.3116 kcal/mol (11327.4251 without restraints) Performing minimization step: 1509. Total energy = 11331.0693 kcal/mol (11322.1848 without restraints) Performing minimization step: 1510. Total energy = 11325.8322 kcal/mol (11316.9499 without restraints) Performing minimization step: 1511. Total energy = 11320.6009 kcal/mol (11311.7207 without restraints) Performing minimization step: 1512. Total energy = 11315.3750 kcal/mol (11306.4968 without restraints) Performing minimization step: 1513. Total energy = 11310.1546 kcal/mol (11301.2787 without restraints) Performing minimization step: 1514. Total energy = 11304.9399 kcal/mol (11296.0661 without restraints) Performing minimization step: 1515. Total energy = 11299.7304 kcal/mol (11290.8588 without restraints) Performing minimization step: 1516. Total energy = 11294.5264 kcal/mol (11285.6569 without restraints) Performing minimization step: 1517. Total energy = 11289.3279 kcal/mol (11280.4606 without restraints) Performing minimization step: 1518. Total energy = 11284.1356 kcal/mol (11275.2703 without restraints) Performing minimization step: 1519. Total energy = 11278.9480 kcal/mol (11270.0849 without restraints) Performing minimization step: 1520. Total energy = 11273.7661 kcal/mol (11264.9051 without restraints) Performing minimization step: 1521. Total energy = 11268.5896 kcal/mol (11259.7307 without restraints) Performing minimization step: 1522. Total energy = 11263.4185 kcal/mol (11254.5618 without restraints) Performing minimization step: 1523. Total energy = 11258.2531 kcal/mol (11249.3985 without restraints) Performing minimization step: 1524. Total energy = 11253.0928 kcal/mol (11244.2401 without restraints) Performing minimization step: 1525. Total energy = 11247.9372 kcal/mol (11239.0869 without restraints) Performing minimization step: 1526. Total energy = 11242.7881 kcal/mol (11233.9399 without restraints) Performing minimization step: 1527. Total energy = 11237.6440 kcal/mol (11228.7980 without restraints) Performing minimization step: 1528. Total energy = 11232.5055 kcal/mol (11223.6614 without restraints) Performing minimization step: 1529. Total energy = 11227.3726 kcal/mol (11218.5307 without restraints) Performing minimization step: 1530. Total energy = 11222.2451 kcal/mol (11213.4054 without restraints) Performing minimization step: 1531. Total energy = 11217.1227 kcal/mol (11208.2851 without restraints) Performing minimization step: 1532. Total energy = 11212.0058 kcal/mol (11203.1704 without restraints) Performing minimization step: 1533. Total energy = 11206.8944 kcal/mol (11198.0611 without restraints) Performing minimization step: 1534. Total energy = 11201.7887 kcal/mol (11192.9575 without restraints) Performing minimization step: 1535. Total energy = 11196.6883 kcal/mol (11187.8593 without restraints) Performing minimization step: 1536. Total energy = 11191.5932 kcal/mol (11182.7663 without restraints) Performing minimization step: 1537. Total energy = 11186.5032 kcal/mol (11177.6784 without restraints) Performing minimization step: 1538. Total energy = 11181.4184 kcal/mol (11172.5956 without restraints) Performing minimization step: 1539. Total energy = 11176.3390 kcal/mol (11167.5184 without restraints) Performing minimization step: 1540. Total energy = 11171.2649 kcal/mol (11162.4465 without restraints) Performing minimization step: 1541. Total energy = 11166.1960 kcal/mol (11157.3796 without restraints) Performing minimization step: 1542. Total energy = 11161.1329 kcal/mol (11152.3186 without restraints) Performing minimization step: 1543. Total energy = 11156.0749 kcal/mol (11147.2626 without restraints) Performing minimization step: 1544. Total energy = 11151.0215 kcal/mol (11142.2115 without restraints) Performing minimization step: 1545. Total energy = 11145.9740 kcal/mol (11137.1661 without restraints) Performing minimization step: 1546. Total energy = 11140.9318 kcal/mol (11132.1260 without restraints) Performing minimization step: 1547. Total energy = 11135.8949 kcal/mol (11127.0912 without restraints) Performing minimization step: 1548. Total energy = 11130.8631 kcal/mol (11122.0615 without restraints) Performing minimization step: 1549. Total energy = 11125.8372 kcal/mol (11117.0377 without restraints) Performing minimization step: 1550. Total energy = 11120.8160 kcal/mol (11112.0187 without restraints) Performing minimization step: 1551. Total energy = 11115.8002 kcal/mol (11107.0050 without restraints) Performing minimization step: 1552. Total energy = 11110.7894 kcal/mol (11101.9963 without restraints) Performing minimization step: 1553. Total energy = 11105.7839 kcal/mol (11096.9928 without restraints) Performing minimization step: 1554. Total energy = 11100.7837 kcal/mol (11091.9948 without restraints) Performing minimization step: 1555. Total energy = 11095.7887 kcal/mol (11087.0019 without restraints) Performing minimization step: 1556. Total energy = 11090.7989 kcal/mol (11082.0142 without restraints) Performing minimization step: 1557. Total energy = 11085.8147 kcal/mol (11077.0322 without restraints) Performing minimization step: 1558. Total energy = 11080.8352 kcal/mol (11072.0547 without restraints) Performing minimization step: 1559. Total energy = 11075.8609 kcal/mol (11067.0825 without restraints) Performing minimization step: 1560. Total energy = 11070.8920 kcal/mol (11062.1157 without restraints) Performing minimization step: 1561. Total energy = 11065.9280 kcal/mol (11057.1538 without restraints) Performing minimization step: 1562. Total energy = 11060.9689 kcal/mol (11052.1968 without restraints) Performing minimization step: 1563. Total energy = 11056.0157 kcal/mol (11047.2457 without restraints) Performing minimization step: 1564. Total energy = 11051.0674 kcal/mol (11042.2995 without restraints) Performing minimization step: 1565. Total energy = 11046.1246 kcal/mol (11037.3589 without restraints) Performing minimization step: 1566. Total energy = 11041.1871 kcal/mol (11032.4235 without restraints) Performing minimization step: 1567. Total energy = 11036.2545 kcal/mol (11027.4931 without restraints) Performing minimization step: 1568. Total energy = 11031.3270 kcal/mol (11022.5675 without restraints) Performing minimization step: 1569. Total energy = 11026.4044 kcal/mol (11017.6471 without restraints) Performing minimization step: 1570. Total energy = 11021.4877 kcal/mol (11012.7326 without restraints) Performing minimization step: 1571. Total energy = 11016.5756 kcal/mol (11007.8226 without restraints) Performing minimization step: 1572. Total energy = 11011.6686 kcal/mol (11002.9174 without restraints) Performing minimization step: 1573. Total energy = 11006.7658 kcal/mol (10998.0169 without restraints) Performing minimization step: 1574. Total energy = 11001.8685 kcal/mol (10993.1217 without restraints) Performing minimization step: 1575. Total energy = 10996.9768 kcal/mol (10988.2320 without restraints) Performing minimization step: 1576. Total energy = 10992.0896 kcal/mol (10983.3468 without restraints) Performing minimization step: 1577. Total energy = 10987.2077 kcal/mol (10978.4671 without restraints) Performing minimization step: 1578. Total energy = 10982.3309 kcal/mol (10973.5923 without restraints) Performing minimization step: 1579. Total energy = 10977.4592 kcal/mol (10968.7228 without restraints) Performing minimization step: 1580. Total energy = 10972.5925 kcal/mol (10963.8581 without restraints) Performing minimization step: 1581. Total energy = 10967.7310 kcal/mol (10958.9987 without restraints) Performing minimization step: 1582. Total energy = 10962.8746 kcal/mol (10954.1442 without restraints) Performing minimization step: 1583. Total energy = 10958.0231 kcal/mol (10949.2950 without restraints) Performing minimization step: 1584. Total energy = 10953.1773 kcal/mol (10944.4514 without restraints) Performing minimization step: 1585. Total energy = 10948.3361 kcal/mol (10939.6122 without restraints) Performing minimization step: 1586. Total energy = 10943.4997 kcal/mol (10934.7779 without restraints) Performing minimization step: 1587. Total energy = 10938.6683 kcal/mol (10929.9486 without restraints) Performing minimization step: 1588. Total energy = 10933.8421 kcal/mol (10925.1246 without restraints) Performing minimization step: 1589. Total energy = 10929.0208 kcal/mol (10920.3053 without restraints) Performing minimization step: 1590. Total energy = 10924.2044 kcal/mol (10915.4910 without restraints) Performing minimization step: 1591. Total energy = 10919.3932 kcal/mol (10910.6821 without restraints) Performing minimization step: 1592. Total energy = 10914.5870 kcal/mol (10905.8777 without restraints) Performing minimization step: 1593. Total energy = 10909.7857 kcal/mol (10901.0785 without restraints) Performing minimization step: 1594. Total energy = 10904.9893 kcal/mol (10896.2841 without restraints) Performing minimization step: 1595. Total energy = 10900.1978 kcal/mol (10891.4948 without restraints) Performing minimization step: 1596. Total energy = 10895.4117 kcal/mol (10886.7106 without restraints) Performing minimization step: 1597. Total energy = 10890.6299 kcal/mol (10881.9310 without restraints) Performing minimization step: 1598. Total energy = 10885.8533 kcal/mol (10877.1566 without restraints) Performing minimization step: 1599. Total energy = 10881.0812 kcal/mol (10872.3865 without restraints) Performing minimization step: 1600. Total energy = 10876.3150 kcal/mol (10867.6224 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 10871.5534 kcal/mol (10862.8629 without restraints) Performing minimization step: 1602. Total energy = 10866.7966 kcal/mol (10858.1082 without restraints) Performing minimization step: 1603. Total energy = 10862.0444 kcal/mol (10853.3579 without restraints) Performing minimization step: 1604. Total energy = 10857.2972 kcal/mol (10848.6129 without restraints) Performing minimization step: 1605. Total energy = 10852.5549 kcal/mol (10843.8726 without restraints) Performing minimization step: 1606. Total energy = 10847.8175 kcal/mol (10839.1373 without restraints) Performing minimization step: 1607. Total energy = 10843.0850 kcal/mol (10834.4069 without restraints) Performing minimization step: 1608. Total energy = 10838.3580 kcal/mol (10829.6822 without restraints) Performing minimization step: 1609. Total energy = 10833.6356 kcal/mol (10824.9617 without restraints) Performing minimization step: 1610. Total energy = 10828.9178 kcal/mol (10820.2459 without restraints) Performing minimization step: 1611. Total energy = 10824.2045 kcal/mol (10815.5347 without restraints) Performing minimization step: 1612. Total energy = 10819.4961 kcal/mol (10810.8283 without restraints) Performing minimization step: 1613. Total energy = 10814.7926 kcal/mol (10806.1269 without restraints) Performing minimization step: 1614. Total energy = 10810.0940 kcal/mol (10801.4304 without restraints) Performing minimization step: 1615. Total energy = 10805.4006 kcal/mol (10796.7391 without restraints) Performing minimization step: 1616. Total energy = 10800.7118 kcal/mol (10792.0523 without restraints) Performing minimization step: 1617. Total energy = 10796.0280 kcal/mol (10787.3705 without restraints) Performing minimization step: 1618. Total energy = 10791.3485 kcal/mol (10782.6931 without restraints) Performing minimization step: 1619. Total energy = 10786.6743 kcal/mol (10778.0210 without restraints) Performing minimization step: 1620. Total energy = 10782.0047 kcal/mol (10773.3535 without restraints) Performing minimization step: 1621. Total energy = 10777.3400 kcal/mol (10768.6909 without restraints) Performing minimization step: 1622. Total energy = 10772.6804 kcal/mol (10764.0333 without restraints) Performing minimization step: 1623. Total energy = 10768.0254 kcal/mol (10759.3803 without restraints) Performing minimization step: 1624. Total energy = 10763.3752 kcal/mol (10754.7322 without restraints) Performing minimization step: 1625. Total energy = 10758.7295 kcal/mol (10750.0885 without restraints) Performing minimization step: 1626. Total energy = 10754.0886 kcal/mol (10745.4497 without restraints) Performing minimization step: 1627. Total energy = 10749.4524 kcal/mol (10740.8156 without restraints) Performing minimization step: 1628. Total energy = 10744.8212 kcal/mol (10736.1864 without restraints) Performing minimization step: 1629. Total energy = 10740.1944 kcal/mol (10731.5619 without restraints) Performing minimization step: 1630. Total energy = 10735.5726 kcal/mol (10726.9422 without restraints) Performing minimization step: 1631. Total energy = 10730.9556 kcal/mol (10722.3271 without restraints) Performing minimization step: 1632. Total energy = 10726.3433 kcal/mol (10717.7169 without restraints) Performing minimization step: 1633. Total energy = 10721.7356 kcal/mol (10713.1112 without restraints) Performing minimization step: 1634. Total energy = 10717.1330 kcal/mol (10708.5106 without restraints) Performing minimization step: 1635. Total energy = 10712.5351 kcal/mol (10703.9149 without restraints) Performing minimization step: 1636. Total energy = 10707.9416 kcal/mol (10699.3233 without restraints) Performing minimization step: 1637. Total energy = 10703.3529 kcal/mol (10694.7366 without restraints) Performing minimization step: 1638. Total energy = 10698.7687 kcal/mol (10690.1544 without restraints) Performing minimization step: 1639. Total energy = 10694.1890 kcal/mol (10685.5768 without restraints) Performing minimization step: 1640. Total energy = 10689.6142 kcal/mol (10681.0041 without restraints) Performing minimization step: 1641. Total energy = 10685.0437 kcal/mol (10676.4357 without restraints) Performing minimization step: 1642. Total energy = 10680.4777 kcal/mol (10671.8714 without restraints) Performing minimization step: 1643. Total energy = 10675.9167 kcal/mol (10667.3127 without restraints) Performing minimization step: 1644. Total energy = 10671.3606 kcal/mol (10662.7588 without restraints) Performing minimization step: 1645. Total energy = 10666.8092 kcal/mol (10658.2095 without restraints) Performing minimization step: 1646. Total energy = 10662.2628 kcal/mol (10653.6652 without restraints) Performing minimization step: 1647. Total energy = 10657.7206 kcal/mol (10649.1249 without restraints) Performing minimization step: 1648. Total energy = 10653.1828 kcal/mol (10644.5890 without restraints) Performing minimization step: 1649. Total energy = 10648.6502 kcal/mol (10640.0586 without restraints) Performing minimization step: 1650. Total energy = 10644.1217 kcal/mol (10635.5322 without restraints) Performing minimization step: 1651. Total energy = 10639.5984 kcal/mol (10631.0114 without restraints) Performing minimization step: 1652. Total energy = 10635.0800 kcal/mol (10626.4945 without restraints) Performing minimization step: 1653. Total energy = 10630.5657 kcal/mol (10621.9824 without restraints) Performing minimization step: 1654. Total energy = 10626.0555 kcal/mol (10617.4741 without restraints) Performing minimization step: 1655. Total energy = 10621.5500 kcal/mol (10612.9706 without restraints) Performing minimization step: 1656. Total energy = 10617.0493 kcal/mol (10608.4720 without restraints) Performing minimization step: 1657. Total energy = 10612.5529 kcal/mol (10603.9776 without restraints) Performing minimization step: 1658. Total energy = 10608.0612 kcal/mol (10599.4880 without restraints) Performing minimization step: 1659. Total energy = 10603.5740 kcal/mol (10595.0028 without restraints) Performing minimization step: 1660. Total energy = 10599.0919 kcal/mol (10590.5227 without restraints) Performing minimization step: 1661. Total energy = 10594.6134 kcal/mol (10586.0463 without restraints) Performing minimization step: 1662. Total energy = 10590.1400 kcal/mol (10581.5751 without restraints) Performing minimization step: 1663. Total energy = 10585.6711 kcal/mol (10577.1081 without restraints) Performing minimization step: 1664. Total energy = 10581.2068 kcal/mol (10572.6458 without restraints) Performing minimization step: 1665. Total energy = 10576.7468 kcal/mol (10568.1878 without restraints) Performing minimization step: 1666. Total energy = 10572.2912 kcal/mol (10563.7344 without restraints) Performing minimization step: 1667. Total energy = 10567.8399 kcal/mol (10559.2850 without restraints) Performing minimization step: 1668. Total energy = 10563.3934 kcal/mol (10554.8405 without restraints) Performing minimization step: 1669. Total energy = 10558.9517 kcal/mol (10550.4011 without restraints) Performing minimization step: 1670. Total energy = 10554.5146 kcal/mol (10545.9658 without restraints) Performing minimization step: 1671. Total energy = 10550.0819 kcal/mol (10541.5352 without restraints) Performing minimization step: 1672. Total energy = 10545.6537 kcal/mol (10537.1090 without restraints) Performing minimization step: 1673. Total energy = 10541.2290 kcal/mol (10532.6863 without restraints) Performing minimization step: 1674. Total energy = 10536.8093 kcal/mol (10528.2686 without restraints) Performing minimization step: 1675. Total energy = 10532.3941 kcal/mol (10523.8555 without restraints) Performing minimization step: 1676. Total energy = 10527.9831 kcal/mol (10519.4465 without restraints) Performing minimization step: 1677. Total energy = 10523.5771 kcal/mol (10515.0425 without restraints) Performing minimization step: 1678. Total energy = 10519.1752 kcal/mol (10510.6428 without restraints) Performing minimization step: 1679. Total energy = 10514.7778 kcal/mol (10506.2473 without restraints) Performing minimization step: 1680. Total energy = 10510.3848 kcal/mol (10501.8562 without restraints) Performing minimization step: 1681. Total energy = 10505.9958 kcal/mol (10497.4692 without restraints) Performing minimization step: 1682. Total energy = 10501.6111 kcal/mol (10493.0867 without restraints) Performing minimization step: 1683. Total energy = 10497.2313 kcal/mol (10488.7089 without restraints) Performing minimization step: 1684. Total energy = 10492.8554 kcal/mol (10484.3351 without restraints) Performing minimization step: 1685. Total energy = 10488.4844 kcal/mol (10479.9660 without restraints) Performing minimization step: 1686. Total energy = 10484.1177 kcal/mol (10475.6014 without restraints) Performing minimization step: 1687. Total energy = 10479.7554 kcal/mol (10471.2411 without restraints) Performing minimization step: 1688. Total energy = 10475.3976 kcal/mol (10466.8854 without restraints) Performing minimization step: 1689. Total energy = 10471.0443 kcal/mol (10462.5340 without restraints) Performing minimization step: 1690. Total energy = 10466.6950 kcal/mol (10458.1866 without restraints) Performing minimization step: 1691. Total energy = 10462.3502 kcal/mol (10453.8440 without restraints) Performing minimization step: 1692. Total energy = 10458.0101 kcal/mol (10449.5058 without restraints) Performing minimization step: 1693. Total energy = 10453.6741 kcal/mol (10445.1719 without restraints) Performing minimization step: 1694. Total energy = 10449.3420 kcal/mol (10440.8418 without restraints) Performing minimization step: 1695. Total energy = 10445.0144 kcal/mol (10436.5162 without restraints) Performing minimization step: 1696. Total energy = 10440.6912 kcal/mol (10432.1951 without restraints) Performing minimization step: 1697. Total energy = 10436.3724 kcal/mol (10427.8782 without restraints) Performing minimization step: 1698. Total energy = 10432.0575 kcal/mol (10423.5653 without restraints) Performing minimization step: 1699. Total energy = 10427.7470 kcal/mol (10419.2567 without restraints) Performing minimization step: 1700. Total energy = 10423.4408 kcal/mol (10414.9527 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 10419.1390 kcal/mol (10410.6529 without restraints) Performing minimization step: 1702. Total energy = 10414.8416 kcal/mol (10406.3575 without restraints) Performing minimization step: 1703. Total energy = 10410.5486 kcal/mol (10402.0665 without restraints) Performing minimization step: 1704. Total energy = 10406.2597 kcal/mol (10397.7796 without restraints) Performing minimization step: 1705. Total energy = 10401.9748 kcal/mol (10393.4967 without restraints) Performing minimization step: 1706. Total energy = 10397.6943 kcal/mol (10389.2182 without restraints) Performing minimization step: 1707. Total energy = 10393.4183 kcal/mol (10384.9444 without restraints) Performing minimization step: 1708. Total energy = 10389.1465 kcal/mol (10380.6745 without restraints) Performing minimization step: 1709. Total energy = 10384.8785 kcal/mol (10376.4085 without restraints) Performing minimization step: 1710. Total energy = 10380.6153 kcal/mol (10372.1474 without restraints) Performing minimization step: 1711. Total energy = 10376.3562 kcal/mol (10367.8902 without restraints) Performing minimization step: 1712. Total energy = 10372.1013 kcal/mol (10363.6372 without restraints) Performing minimization step: 1713. Total energy = 10367.8504 kcal/mol (10359.3883 without restraints) Performing minimization step: 1714. Total energy = 10363.6036 kcal/mol (10355.1436 without restraints) Performing minimization step: 1715. Total energy = 10359.3611 kcal/mol (10350.9031 without restraints) Performing minimization step: 1716. Total energy = 10355.1230 kcal/mol (10346.6670 without restraints) Performing minimization step: 1717. Total energy = 10350.8893 kcal/mol (10342.4353 without restraints) Performing minimization step: 1718. Total energy = 10346.6592 kcal/mol (10338.2071 without restraints) Performing minimization step: 1719. Total energy = 10342.4333 kcal/mol (10333.9833 without restraints) Performing minimization step: 1720. Total energy = 10338.2120 kcal/mol (10329.7639 without restraints) Performing minimization step: 1721. Total energy = 10333.9948 kcal/mol (10325.5489 without restraints) Performing minimization step: 1722. Total energy = 10329.7820 kcal/mol (10321.3379 without restraints) Performing minimization step: 1723. Total energy = 10325.5725 kcal/mol (10317.1304 without restraints) Performing minimization step: 1724. Total energy = 10321.3673 kcal/mol (10312.9273 without restraints) Performing minimization step: 1725. Total energy = 10317.1666 kcal/mol (10308.7287 without restraints) Performing minimization step: 1726. Total energy = 10312.9699 kcal/mol (10304.5338 without restraints) Performing minimization step: 1727. Total energy = 10308.7772 kcal/mol (10300.3432 without restraints) Performing minimization step: 1728. Total energy = 10304.5888 kcal/mol (10296.1568 without restraints) Performing minimization step: 1729. Total energy = 10300.4041 kcal/mol (10291.9741 without restraints) Performing minimization step: 1730. Total energy = 10296.2235 kcal/mol (10287.7953 without restraints) Performing minimization step: 1731. Total energy = 10292.0470 kcal/mol (10283.6209 without restraints) Performing minimization step: 1732. Total energy = 10287.8743 kcal/mol (10279.4502 without restraints) Performing minimization step: 1733. Total energy = 10283.7061 kcal/mol (10275.2840 without restraints) Performing minimization step: 1734. Total energy = 10279.5420 kcal/mol (10271.1220 without restraints) Performing minimization step: 1735. Total energy = 10275.3823 kcal/mol (10266.9642 without restraints) Performing minimization step: 1736. Total energy = 10271.2256 kcal/mol (10262.8094 without restraints) Performing minimization step: 1737. Total energy = 10267.0732 kcal/mol (10258.6591 without restraints) Performing minimization step: 1738. Total energy = 10262.9250 kcal/mol (10254.5128 without restraints) Performing minimization step: 1739. Total energy = 10258.7809 kcal/mol (10250.3707 without restraints) Performing minimization step: 1740. Total energy = 10254.6416 kcal/mol (10246.2334 without restraints) Performing minimization step: 1741. Total energy = 10250.5057 kcal/mol (10242.0993 without restraints) Performing minimization step: 1742. Total energy = 10246.3735 kcal/mol (10237.9692 without restraints) Performing minimization step: 1743. Total energy = 10242.2454 kcal/mol (10233.8432 without restraints) Performing minimization step: 1744. Total energy = 10238.1216 kcal/mol (10229.7214 without restraints) Performing minimization step: 1745. Total energy = 10234.0015 kcal/mol (10225.6032 without restraints) Performing minimization step: 1746. Total energy = 10229.8856 kcal/mol (10221.4893 without restraints) Performing minimization step: 1747. Total energy = 10225.7732 kcal/mol (10217.3789 without restraints) Performing minimization step: 1748. Total energy = 10221.6653 kcal/mol (10213.2729 without restraints) Performing minimization step: 1749. Total energy = 10217.5613 kcal/mol (10209.1709 without restraints) Performing minimization step: 1750. Total energy = 10213.4610 kcal/mol (10205.0725 without restraints) Performing minimization step: 1751. Total energy = 10209.3641 kcal/mol (10200.9777 without restraints) Performing minimization step: 1752. Total energy = 10205.2721 kcal/mol (10196.8876 without restraints) Performing minimization step: 1753. Total energy = 10201.1833 kcal/mol (10192.8008 without restraints) Performing minimization step: 1754. Total energy = 10197.0988 kcal/mol (10188.7182 without restraints) Performing minimization step: 1755. Total energy = 10193.0181 kcal/mol (10184.6396 without restraints) Performing minimization step: 1756. Total energy = 10188.9416 kcal/mol (10180.5650 without restraints) Performing minimization step: 1757. Total energy = 10184.8689 kcal/mol (10176.4943 without restraints) Performing minimization step: 1758. Total energy = 10180.7998 kcal/mol (10172.4272 without restraints) Performing minimization step: 1759. Total energy = 10176.7348 kcal/mol (10168.3641 without restraints) Performing minimization step: 1760. Total energy = 10172.6734 kcal/mol (10164.3047 without restraints) Performing minimization step: 1761. Total energy = 10168.6163 kcal/mol (10160.2496 without restraints) Performing minimization step: 1762. Total energy = 10164.5628 kcal/mol (10156.1980 without restraints) Performing minimization step: 1763. Total energy = 10160.5132 kcal/mol (10152.1504 without restraints) Performing minimization step: 1764. Total energy = 10156.4676 kcal/mol (10148.1067 without restraints) Performing minimization step: 1765. Total energy = 10152.4266 kcal/mol (10144.0677 without restraints) Performing minimization step: 1766. Total energy = 10148.3885 kcal/mol (10140.0316 without restraints) Performing minimization step: 1767. Total energy = 10144.3543 kcal/mol (10135.9994 without restraints) Performing minimization step: 1768. Total energy = 10140.3238 kcal/mol (10131.9709 without restraints) Performing minimization step: 1769. Total energy = 10136.2974 kcal/mol (10127.9464 without restraints) Performing minimization step: 1770. Total energy = 10132.2747 kcal/mol (10123.9258 without restraints) Performing minimization step: 1771. Total energy = 10128.2556 kcal/mol (10119.9085 without restraints) Performing minimization step: 1772. Total energy = 10124.2405 kcal/mol (10115.8955 without restraints) Performing minimization step: 1773. Total energy = 10120.2294 kcal/mol (10111.8862 without restraints) Performing minimization step: 1774. Total energy = 10116.2218 kcal/mol (10107.8806 without restraints) Performing minimization step: 1775. Total energy = 10112.2179 kcal/mol (10103.8786 without restraints) Performing minimization step: 1776. Total energy = 10108.2178 kcal/mol (10099.8804 without restraints) Performing minimization step: 1777. Total energy = 10104.2218 kcal/mol (10095.8864 without restraints) Performing minimization step: 1778. Total energy = 10100.2295 kcal/mol (10091.8960 without restraints) Performing minimization step: 1779. Total energy = 10096.2407 kcal/mol (10087.9093 without restraints) Performing minimization step: 1780. Total energy = 10092.2556 kcal/mol (10083.9261 without restraints) Performing minimization step: 1781. Total energy = 10088.2740 kcal/mol (10079.9464 without restraints) Performing minimization step: 1782. Total energy = 10084.2963 kcal/mol (10075.9706 without restraints) Performing minimization step: 1783. Total energy = 10080.3229 kcal/mol (10071.9993 without restraints) Performing minimization step: 1784. Total energy = 10076.3526 kcal/mol (10068.0309 without restraints) Performing minimization step: 1785. Total energy = 10072.3858 kcal/mol (10064.0661 without restraints) Performing minimization step: 1786. Total energy = 10068.4229 kcal/mol (10060.1052 without restraints) Performing minimization step: 1787. Total energy = 10064.4648 kcal/mol (10056.1491 without restraints) Performing minimization step: 1788. Total energy = 10060.5099 kcal/mol (10052.1960 without restraints) Performing minimization step: 1789. Total energy = 10056.5584 kcal/mol (10048.2464 without restraints) Performing minimization step: 1790. Total energy = 10052.6100 kcal/mol (10044.3000 without restraints) Performing minimization step: 1791. Total energy = 10048.6651 kcal/mol (10040.3570 without restraints) Performing minimization step: 1792. Total energy = 10044.7248 kcal/mol (10036.4187 without restraints) Performing minimization step: 1793. Total energy = 10040.7875 kcal/mol (10032.4833 without restraints) Performing minimization step: 1794. Total energy = 10036.8541 kcal/mol (10028.5518 without restraints) Performing minimization step: 1795. Total energy = 10032.9244 kcal/mol (10024.6242 without restraints) Performing minimization step: 1796. Total energy = 10028.9981 kcal/mol (10020.6998 without restraints) Performing minimization step: 1797. Total energy = 10025.0755 kcal/mol (10016.7792 without restraints) Performing minimization step: 1798. Total energy = 10021.1568 kcal/mol (10012.8623 without restraints) Performing minimization step: 1799. Total energy = 10017.2414 kcal/mol (10008.9487 without restraints) Performing minimization step: 1800. Total energy = 10013.3293 kcal/mol (10005.0386 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 10009.4210 kcal/mol (10001.1323 without restraints) Performing minimization step: 1802. Total energy = 10005.5164 kcal/mol (9997.2296 without restraints) Performing minimization step: 1803. Total energy = 10001.6152 kcal/mol (9993.3304 without restraints) Performing minimization step: 1804. Total energy = 9997.7175 kcal/mol (9989.4346 without restraints) Performing minimization step: 1805. Total energy = 9993.8233 kcal/mol (9985.5423 without restraints) Performing minimization step: 1806. Total energy = 9989.9327 kcal/mol (9981.6537 without restraints) Performing minimization step: 1807. Total energy = 9986.0460 kcal/mol (9977.7689 without restraints) Performing minimization step: 1808. Total energy = 9982.1621 kcal/mol (9973.8869 without restraints) Performing minimization step: 1809. Total energy = 9978.2820 kcal/mol (9970.0087 without restraints) Performing minimization step: 1810. Total energy = 9974.4055 kcal/mol (9966.1341 without restraints) Performing minimization step: 1811. Total energy = 9970.5323 kcal/mol (9962.2629 without restraints) Performing minimization step: 1812. Total energy = 9966.6630 kcal/mol (9958.3955 without restraints) Performing minimization step: 1813. Total energy = 9962.7976 kcal/mol (9954.5320 without restraints) Performing minimization step: 1814. Total energy = 9958.9357 kcal/mol (9950.6721 without restraints) Performing minimization step: 1815. Total energy = 9955.0767 kcal/mol (9946.8150 without restraints) Performing minimization step: 1816. Total energy = 9951.2216 kcal/mol (9942.9619 without restraints) Performing minimization step: 1817. Total energy = 9947.3694 kcal/mol (9939.1116 without restraints) Performing minimization step: 1818. Total energy = 9943.5214 kcal/mol (9935.2655 without restraints) Performing minimization step: 1819. Total energy = 9939.6766 kcal/mol (9931.4226 without restraints) Performing minimization step: 1820. Total energy = 9935.8352 kcal/mol (9927.5831 without restraints) Performing minimization step: 1821. Total energy = 9931.9972 kcal/mol (9923.7470 without restraints) Performing minimization step: 1822. Total energy = 9928.1624 kcal/mol (9919.9141 without restraints) Performing minimization step: 1823. Total energy = 9924.3309 kcal/mol (9916.0846 without restraints) Performing minimization step: 1824. Total energy = 9920.5033 kcal/mol (9912.2590 without restraints) Performing minimization step: 1825. Total energy = 9916.6792 kcal/mol (9908.4367 without restraints) Performing minimization step: 1826. Total energy = 9912.8585 kcal/mol (9904.6179 without restraints) Performing minimization step: 1827. Total energy = 9909.0410 kcal/mol (9900.8023 without restraints) Performing minimization step: 1828. Total energy = 9905.2267 kcal/mol (9896.9899 without restraints) Performing minimization step: 1829. Total energy = 9901.4160 kcal/mol (9893.1812 without restraints) Performing minimization step: 1830. Total energy = 9897.6088 kcal/mol (9889.3758 without restraints) Performing minimization step: 1831. Total energy = 9893.8046 kcal/mol (9885.5737 without restraints) Performing minimization step: 1832. Total energy = 9890.0046 kcal/mol (9881.7756 without restraints) Performing minimization step: 1833. Total energy = 9886.2079 kcal/mol (9877.9806 without restraints) Performing minimization step: 1834. Total energy = 9882.4141 kcal/mol (9874.1887 without restraints) Performing minimization step: 1835. Total energy = 9878.6239 kcal/mol (9870.4005 without restraints) Performing minimization step: 1836. Total energy = 9874.8370 kcal/mol (9866.6155 without restraints) Performing minimization step: 1837. Total energy = 9871.0533 kcal/mol (9862.8336 without restraints) Performing minimization step: 1838. Total energy = 9867.2724 kcal/mol (9859.0547 without restraints) Performing minimization step: 1839. Total energy = 9863.4953 kcal/mol (9855.2794 without restraints) Performing minimization step: 1840. Total energy = 9859.7215 kcal/mol (9851.5075 without restraints) Performing minimization step: 1841. Total energy = 9855.9505 kcal/mol (9847.7385 without restraints) Performing minimization step: 1842. Total energy = 9852.1836 kcal/mol (9843.9735 without restraints) Performing minimization step: 1843. Total energy = 9848.4196 kcal/mol (9840.2115 without restraints) Performing minimization step: 1844. Total energy = 9844.6593 kcal/mol (9836.4531 without restraints) Performing minimization step: 1845. Total energy = 9840.9022 kcal/mol (9832.6978 without restraints) Performing minimization step: 1846. Total energy = 9837.1483 kcal/mol (9828.9459 without restraints) Performing minimization step: 1847. Total energy = 9833.3976 kcal/mol (9825.1970 without restraints) Performing minimization step: 1848. Total energy = 9829.6507 kcal/mol (9821.4518 without restraints) Performing minimization step: 1849. Total energy = 9825.9064 kcal/mol (9817.7096 without restraints) Performing minimization step: 1850. Total energy = 9822.1658 kcal/mol (9813.9709 without restraints) Performing minimization step: 1851. Total energy = 9818.4281 kcal/mol (9810.2349 without restraints) Performing minimization step: 1852. Total energy = 9814.6934 kcal/mol (9806.5022 without restraints) Performing minimization step: 1853. Total energy = 9810.9619 kcal/mol (9802.7726 without restraints) Performing minimization step: 1854. Total energy = 9807.2340 kcal/mol (9799.0466 without restraints) Performing minimization step: 1855. Total energy = 9803.5090 kcal/mol (9795.3234 without restraints) Performing minimization step: 1856. Total energy = 9799.7876 kcal/mol (9791.6040 without restraints) Performing minimization step: 1857. Total energy = 9796.0695 kcal/mol (9787.8877 without restraints) Performing minimization step: 1858. Total energy = 9792.3541 kcal/mol (9784.1742 without restraints) Performing minimization step: 1859. Total energy = 9788.6417 kcal/mol (9780.4637 without restraints) Performing minimization step: 1860. Total energy = 9784.9328 kcal/mol (9776.7567 without restraints) Performing minimization step: 1861. Total energy = 9781.2274 kcal/mol (9773.0533 without restraints) Performing minimization step: 1862. Total energy = 9777.5251 kcal/mol (9769.3528 without restraints) Performing minimization step: 1863. Total energy = 9773.8257 kcal/mol (9765.6553 without restraints) Performing minimization step: 1864. Total energy = 9770.1294 kcal/mol (9761.9609 without restraints) Performing minimization step: 1865. Total energy = 9766.4365 kcal/mol (9758.2698 without restraints) Performing minimization step: 1866. Total energy = 9762.7464 kcal/mol (9754.5816 without restraints) Performing minimization step: 1867. Total energy = 9759.0600 kcal/mol (9750.8971 without restraints) Performing minimization step: 1868. Total energy = 9755.3763 kcal/mol (9747.2152 without restraints) Performing minimization step: 1869. Total energy = 9751.6956 kcal/mol (9743.5364 without restraints) Performing minimization step: 1870. Total energy = 9748.0183 kcal/mol (9739.8610 without restraints) Performing minimization step: 1871. Total energy = 9744.3443 kcal/mol (9736.1891 without restraints) Performing minimization step: 1872. Total energy = 9740.6733 kcal/mol (9732.5199 without restraints) Performing minimization step: 1873. Total energy = 9737.0052 kcal/mol (9728.8534 without restraints) Performing minimization step: 1874. Total energy = 9733.3401 kcal/mol (9725.1903 without restraints) Performing minimization step: 1875. Total energy = 9729.6785 kcal/mol (9721.5306 without restraints) Performing minimization step: 1876. Total energy = 9726.0195 kcal/mol (9717.8733 without restraints) Performing minimization step: 1877. Total energy = 9722.3635 kcal/mol (9714.2193 without restraints) Performing minimization step: 1878. Total energy = 9718.7109 kcal/mol (9710.5686 without restraints) Performing minimization step: 1879. Total energy = 9715.0612 kcal/mol (9706.9208 without restraints) Performing minimization step: 1880. Total energy = 9711.4147 kcal/mol (9703.2761 without restraints) Performing minimization step: 1881. Total energy = 9707.7711 kcal/mol (9699.6344 without restraints) Performing minimization step: 1882. Total energy = 9704.1308 kcal/mol (9695.9958 without restraints) Performing minimization step: 1883. Total energy = 9700.4931 kcal/mol (9692.3600 without restraints) Performing minimization step: 1884. Total energy = 9696.8584 kcal/mol (9688.7273 without restraints) Performing minimization step: 1885. Total energy = 9693.2268 kcal/mol (9685.0975 without restraints) Performing minimization step: 1886. Total energy = 9689.5984 kcal/mol (9681.4710 without restraints) Performing minimization step: 1887. Total energy = 9685.9728 kcal/mol (9677.8472 without restraints) Performing minimization step: 1888. Total energy = 9682.3505 kcal/mol (9674.2268 without restraints) Performing minimization step: 1889. Total energy = 9678.7309 kcal/mol (9670.6090 without restraints) Performing minimization step: 1890. Total energy = 9675.1142 kcal/mol (9666.9942 without restraints) Performing minimization step: 1891. Total energy = 9671.5005 kcal/mol (9663.3824 without restraints) Performing minimization step: 1892. Total energy = 9667.8897 kcal/mol (9659.7733 without restraints) Performing minimization step: 1893. Total energy = 9664.2819 kcal/mol (9656.1674 without restraints) Performing minimization step: 1894. Total energy = 9660.6768 kcal/mol (9652.5642 without restraints) Performing minimization step: 1895. Total energy = 9657.0748 kcal/mol (9648.9641 without restraints) Performing minimization step: 1896. Total energy = 9653.4761 kcal/mol (9645.3672 without restraints) Performing minimization step: 1897. Total energy = 9649.8798 kcal/mol (9641.7727 without restraints) Performing minimization step: 1898. Total energy = 9646.2868 kcal/mol (9638.1816 without restraints) Performing minimization step: 1899. Total energy = 9642.6966 kcal/mol (9634.5933 without restraints) Performing minimization step: 1900. Total energy = 9639.1092 kcal/mol (9631.0077 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 9635.5246 kcal/mol (9627.4250 without restraints) Performing minimization step: 1902. Total energy = 9631.9432 kcal/mol (9623.8454 without restraints) Performing minimization step: 1903. Total energy = 9628.3647 kcal/mol (9620.2689 without restraints) Performing minimization step: 1904. Total energy = 9624.7896 kcal/mol (9616.6956 without restraints) Performing minimization step: 1905. Total energy = 9621.2167 kcal/mol (9613.1244 without restraints) Performing minimization step: 1906. Total energy = 9617.6467 kcal/mol (9609.5563 without restraints) Performing minimization step: 1907. Total energy = 9614.0795 kcal/mol (9605.9909 without restraints) Performing minimization step: 1908. Total energy = 9610.5162 kcal/mol (9602.4295 without restraints) Performing minimization step: 1909. Total energy = 9606.9551 kcal/mol (9598.8702 without restraints) Performing minimization step: 1910. Total energy = 9603.3966 kcal/mol (9595.3135 without restraints) Performing minimization step: 1911. Total energy = 9599.8409 kcal/mol (9591.7596 without restraints) Performing minimization step: 1912. Total energy = 9596.2881 kcal/mol (9588.2087 without restraints) Performing minimization step: 1913. Total energy = 9592.7383 kcal/mol (9584.6607 without restraints) Performing minimization step: 1914. Total energy = 9589.1911 kcal/mol (9581.1154 without restraints) Performing minimization step: 1915. Total energy = 9585.6466 kcal/mol (9577.5726 without restraints) Performing minimization step: 1916. Total energy = 9582.1055 kcal/mol (9574.0335 without restraints) Performing minimization step: 1917. Total energy = 9578.5667 kcal/mol (9570.4965 without restraints) Performing minimization step: 1918. Total energy = 9575.0314 kcal/mol (9566.9630 without restraints) Performing minimization step: 1919. Total energy = 9571.4981 kcal/mol (9563.4315 without restraints) Performing minimization step: 1920. Total energy = 9567.9675 kcal/mol (9559.9028 without restraints) Performing minimization step: 1921. Total energy = 9564.4401 kcal/mol (9556.3771 without restraints) Performing minimization step: 1922. Total energy = 9560.9152 kcal/mol (9552.8541 without restraints) Performing minimization step: 1923. Total energy = 9557.3931 kcal/mol (9549.3339 without restraints) Performing minimization step: 1924. Total energy = 9553.8737 kcal/mol (9545.8163 without restraints) Performing minimization step: 1925. Total energy = 9550.3576 kcal/mol (9542.3020 without restraints) Performing minimization step: 1926. Total energy = 9546.8439 kcal/mol (9538.7900 without restraints) Performing minimization step: 1927. Total energy = 9543.3332 kcal/mol (9535.2813 without restraints) Performing minimization step: 1928. Total energy = 9539.8248 kcal/mol (9531.7747 without restraints) Performing minimization step: 1929. Total energy = 9536.3193 kcal/mol (9528.2710 without restraints) Performing minimization step: 1930. Total energy = 9532.8164 kcal/mol (9524.7699 without restraints) Performing minimization step: 1931. Total energy = 9529.3164 kcal/mol (9521.2717 without restraints) Performing minimization step: 1932. Total energy = 9525.8189 kcal/mol (9517.7761 without restraints) Performing minimization step: 1933. Total energy = 9522.3241 kcal/mol (9514.2831 without restraints) Performing minimization step: 1934. Total energy = 9518.8323 kcal/mol (9510.7931 without restraints) Performing minimization step: 1935. Total energy = 9515.3430 kcal/mol (9507.3058 without restraints) Performing minimization step: 1936. Total energy = 9511.8566 kcal/mol (9503.8210 without restraints) Performing minimization step: 1937. Total energy = 9508.3723 kcal/mol (9500.3384 without restraints) Performing minimization step: 1938. Total energy = 9504.8909 kcal/mol (9496.8590 without restraints) Performing minimization step: 1939. Total energy = 9501.4125 kcal/mol (9493.3823 without restraints) Performing minimization step: 1940. Total energy = 9497.9362 kcal/mol (9489.9078 without restraints) Performing minimization step: 1941. Total energy = 9494.4626 kcal/mol (9486.4359 without restraints) Performing minimization step: 1942. Total energy = 9490.9919 kcal/mol (9482.9671 without restraints) Performing minimization step: 1943. Total energy = 9487.5236 kcal/mol (9479.5006 without restraints) Performing minimization step: 1944. Total energy = 9484.0583 kcal/mol (9476.0371 without restraints) Performing minimization step: 1945. Total energy = 9480.5953 kcal/mol (9472.5759 without restraints) Performing minimization step: 1946. Total energy = 9477.1349 kcal/mol (9469.1174 without restraints) Performing minimization step: 1947. Total energy = 9473.6772 kcal/mol (9465.6614 without restraints) Performing minimization step: 1948. Total energy = 9470.2222 kcal/mol (9462.2082 without restraints) Performing minimization step: 1949. Total energy = 9466.7696 kcal/mol (9458.7574 without restraints) Performing minimization step: 1950. Total energy = 9463.3199 kcal/mol (9455.3096 without restraints) Performing minimization step: 1951. Total energy = 9459.8732 kcal/mol (9451.8647 without restraints) Performing minimization step: 1952. Total energy = 9456.4288 kcal/mol (9448.4221 without restraints) Performing minimization step: 1953. Total energy = 9452.9865 kcal/mol (9444.9815 without restraints) Performing minimization step: 1954. Total energy = 9449.5470 kcal/mol (9441.5438 without restraints) Performing minimization step: 1955. Total energy = 9446.1103 kcal/mol (9438.1089 without restraints) Performing minimization step: 1956. Total energy = 9442.6759 kcal/mol (9434.6763 without restraints) Performing minimization step: 1957. Total energy = 9439.2441 kcal/mol (9431.2463 without restraints) Performing minimization step: 1958. Total energy = 9435.8146 kcal/mol (9427.8186 without restraints) Performing minimization step: 1959. Total energy = 9432.3877 kcal/mol (9424.3935 without restraints) Performing minimization step: 1960. Total energy = 9428.9633 kcal/mol (9420.9709 without restraints) Performing minimization step: 1961. Total energy = 9425.5414 kcal/mol (9417.5507 without restraints) Performing minimization step: 1962. Total energy = 9422.1225 kcal/mol (9414.1336 without restraints) Performing minimization step: 1963. Total energy = 9418.7055 kcal/mol (9410.7184 without restraints) Performing minimization step: 1964. Total energy = 9415.2911 kcal/mol (9407.3058 without restraints) Performing minimization step: 1965. Total energy = 9411.8793 kcal/mol (9403.8958 without restraints) Performing minimization step: 1966. Total energy = 9408.4702 kcal/mol (9400.4885 without restraints) Performing minimization step: 1967. Total energy = 9405.0631 kcal/mol (9397.0832 without restraints) Performing minimization step: 1968. Total energy = 9401.6589 kcal/mol (9393.6808 without restraints) Performing minimization step: 1969. Total energy = 9398.2568 kcal/mol (9390.2804 without restraints) Performing minimization step: 1970. Total energy = 9394.8572 kcal/mol (9386.8826 without restraints) Performing minimization step: 1971. Total energy = 9391.4601 kcal/mol (9383.4873 without restraints) Performing minimization step: 1972. Total energy = 9388.0656 kcal/mol (9380.0946 without restraints) Performing minimization step: 1973. Total energy = 9384.6737 kcal/mol (9376.7045 without restraints) Performing minimization step: 1974. Total energy = 9381.2840 kcal/mol (9373.3165 without restraints) Performing minimization step: 1975. Total energy = 9377.8969 kcal/mol (9369.9312 without restraints) Performing minimization step: 1976. Total energy = 9374.5123 kcal/mol (9366.5483 without restraints) Performing minimization step: 1977. Total energy = 9371.1298 kcal/mol (9363.1676 without restraints) Performing minimization step: 1978. Total energy = 9367.7498 kcal/mol (9359.7894 without restraints) Performing minimization step: 1979. Total energy = 9364.3724 kcal/mol (9356.4138 without restraints) Performing minimization step: 1980. Total energy = 9360.9974 kcal/mol (9353.0405 without restraints) Performing minimization step: 1981. Total energy = 9357.6246 kcal/mol (9349.6695 without restraints) Performing minimization step: 1982. Total energy = 9354.2540 kcal/mol (9346.3006 without restraints) Performing minimization step: 1983. Total energy = 9350.8859 kcal/mol (9342.9344 without restraints) Performing minimization step: 1984. Total energy = 9347.5203 kcal/mol (9339.5705 without restraints) Performing minimization step: 1985. Total energy = 9344.1568 kcal/mol (9336.2086 without restraints) Performing minimization step: 1986. Total energy = 9340.7964 kcal/mol (9332.8501 without restraints) Performing minimization step: 1987. Total energy = 9337.4382 kcal/mol (9329.4938 without restraints) Performing minimization step: 1988. Total energy = 9334.0824 kcal/mol (9326.1397 without restraints) Performing minimization step: 1989. Total energy = 9330.7290 kcal/mol (9322.7880 without restraints) Performing minimization step: 1990. Total energy = 9327.3779 kcal/mol (9319.4386 without restraints) Performing minimization step: 1991. Total energy = 9324.0291 kcal/mol (9316.0917 without restraints) Performing minimization step: 1992. Total energy = 9320.6820 kcal/mol (9312.7463 without restraints) Performing minimization step: 1993. Total energy = 9317.3375 kcal/mol (9309.4036 without restraints) Performing minimization step: 1994. Total energy = 9313.9952 kcal/mol (9306.0630 without restraints) Performing minimization step: 1995. Total energy = 9310.6551 kcal/mol (9302.7247 without restraints) Performing minimization step: 1996. Total energy = 9307.3175 kcal/mol (9299.3887 without restraints) Performing minimization step: 1997. Total energy = 9303.9821 kcal/mol (9296.0551 without restraints) Performing minimization step: 1998. Total energy = 9300.6489 kcal/mol (9292.7238 without restraints) Performing minimization step: 1999. Total energy = 9297.3185 kcal/mol (9289.3950 without restraints) Performing minimization step: 2000. Total energy = 9293.9899 kcal/mol (9286.0682 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 9290.6637 kcal/mol (9282.7438 without restraints) Performing minimization step: 2002. Total energy = 9287.3398 kcal/mol (9279.4217 without restraints) Performing minimization step: 2003. Total energy = 9284.0183 kcal/mol (9276.1018 without restraints) Performing minimization step: 2004. Total energy = 9280.6991 kcal/mol (9272.7844 without restraints) Performing minimization step: 2005. Total energy = 9277.3821 kcal/mol (9269.4691 without restraints) Performing minimization step: 2006. Total energy = 9274.0673 kcal/mol (9266.1561 without restraints) Performing minimization step: 2007. Total energy = 9270.7545 kcal/mol (9262.8451 without restraints) Performing minimization step: 2008. Total energy = 9267.4440 kcal/mol (9259.5362 without restraints) Performing minimization step: 2009. Total energy = 9264.1363 kcal/mol (9256.2303 without restraints) Performing minimization step: 2010. Total energy = 9260.8305 kcal/mol (9252.9262 without restraints) Performing minimization step: 2011. Total energy = 9257.5271 kcal/mol (9249.6246 without restraints) Performing minimization step: 2012. Total energy = 9254.2257 kcal/mol (9246.3249 without restraints) Performing minimization step: 2013. Total energy = 9250.9264 kcal/mol (9243.0273 without restraints) Performing minimization step: 2014. Total energy = 9247.6294 kcal/mol (9239.7321 without restraints) Performing minimization step: 2015. Total energy = 9244.3348 kcal/mol (9236.4392 without restraints) Performing minimization step: 2016. Total energy = 9241.0419 kcal/mol (9233.1481 without restraints) Performing minimization step: 2017. Total energy = 9237.7519 kcal/mol (9229.8598 without restraints) Performing minimization step: 2018. Total energy = 9234.4636 kcal/mol (9226.5733 without restraints) Performing minimization step: 2019. Total energy = 9231.1772 kcal/mol (9223.2885 without restraints) Performing minimization step: 2020. Total energy = 9227.8935 kcal/mol (9220.0064 without restraints) Performing minimization step: 2021. Total energy = 9224.6115 kcal/mol (9216.7263 without restraints) Performing minimization step: 2022. Total energy = 9221.3327 kcal/mol (9213.4492 without restraints) Performing minimization step: 2023. Total energy = 9218.0552 kcal/mol (9210.1734 without restraints) Performing minimization step: 2024. Total energy = 9214.7795 kcal/mol (9206.8994 without restraints) Performing minimization step: 2025. Total energy = 9211.5069 kcal/mol (9203.6286 without restraints) Performing minimization step: 2026. Total energy = 9208.2361 kcal/mol (9200.3595 without restraints) Performing minimization step: 2027. Total energy = 9204.9675 kcal/mol (9197.0926 without restraints) Performing minimization step: 2028. Total energy = 9201.7008 kcal/mol (9193.8276 without restraints) Performing minimization step: 2029. Total energy = 9198.4361 kcal/mol (9190.5647 without restraints) Performing minimization step: 2030. Total energy = 9195.1736 kcal/mol (9187.3038 without restraints) Performing minimization step: 2031. Total energy = 9191.9130 kcal/mol (9184.0450 without restraints) Performing minimization step: 2032. Total energy = 9188.6548 kcal/mol (9180.7885 without restraints) Performing minimization step: 2033. Total energy = 9185.3988 kcal/mol (9177.5344 without restraints) Performing minimization step: 2034. Total energy = 9182.1450 kcal/mol (9174.2822 without restraints) Performing minimization step: 2035. Total energy = 9178.8930 kcal/mol (9171.0319 without restraints) Performing minimization step: 2036. Total energy = 9175.6430 kcal/mol (9167.7836 without restraints) Performing minimization step: 2037. Total energy = 9172.3952 kcal/mol (9164.5375 without restraints) Performing minimization step: 2038. Total energy = 9169.1502 kcal/mol (9161.2942 without restraints) Performing minimization step: 2039. Total energy = 9165.9064 kcal/mol (9158.0521 without restraints) Performing minimization step: 2040. Total energy = 9162.6645 kcal/mol (9154.8119 without restraints) Performing minimization step: 2041. Total energy = 9159.4251 kcal/mol (9151.5742 without restraints) Performing minimization step: 2042. Total energy = 9156.1876 kcal/mol (9148.3384 without restraints) Performing minimization step: 2043. Total energy = 9152.9520 kcal/mol (9145.1045 without restraints) Performing minimization step: 2044. Total energy = 9149.7184 kcal/mol (9141.8726 without restraints) Performing minimization step: 2045. Total energy = 9146.4872 kcal/mol (9138.6432 without restraints) Performing minimization step: 2046. Total energy = 9143.2579 kcal/mol (9135.4156 without restraints) Performing minimization step: 2047. Total energy = 9140.0310 kcal/mol (9132.1903 without restraints) Performing minimization step: 2048. Total energy = 9136.8055 kcal/mol (9128.9665 without restraints) Performing minimization step: 2049. Total energy = 9133.5822 kcal/mol (9125.7450 without restraints) Performing minimization step: 2050. Total energy = 9130.3609 kcal/mol (9122.5253 without restraints) Performing minimization step: 2051. Total energy = 9127.1417 kcal/mol (9119.3079 without restraints) Performing minimization step: 2052. Total energy = 9123.9247 kcal/mol (9116.0925 without restraints) Performing minimization step: 2053. Total energy = 9120.7092 kcal/mol (9112.8787 without restraints) Performing minimization step: 2054. Total energy = 9117.4959 kcal/mol (9109.6671 without restraints) Performing minimization step: 2055. Total energy = 9114.2844 kcal/mol (9106.4573 without restraints) Performing minimization step: 2056. Total energy = 9111.0749 kcal/mol (9103.2496 without restraints) Performing minimization step: 2057. Total energy = 9107.8676 kcal/mol (9100.0439 without restraints) Performing minimization step: 2058. Total energy = 9104.6622 kcal/mol (9096.8401 without restraints) Performing minimization step: 2059. Total energy = 9101.4587 kcal/mol (9093.6384 without restraints) Performing minimization step: 2060. Total energy = 9098.2570 kcal/mol (9090.4383 without restraints) Performing minimization step: 2061. Total energy = 9095.0571 kcal/mol (9087.2401 without restraints) Performing minimization step: 2062. Total energy = 9091.8592 kcal/mol (9084.0439 without restraints) Performing minimization step: 2063. Total energy = 9088.6630 kcal/mol (9080.8493 without restraints) Performing minimization step: 2064. Total energy = 9085.4690 kcal/mol (9077.6570 without restraints) Performing minimization step: 2065. Total energy = 9082.2773 kcal/mol (9074.4670 without restraints) Performing minimization step: 2066. Total energy = 9079.0872 kcal/mol (9071.2786 without restraints) Performing minimization step: 2067. Total energy = 9075.8989 kcal/mol (9068.0920 without restraints) Performing minimization step: 2068. Total energy = 9072.7123 kcal/mol (9064.9071 without restraints) Performing minimization step: 2069. Total energy = 9069.5283 kcal/mol (9061.7248 without restraints) Performing minimization step: 2070. Total energy = 9066.3454 kcal/mol (9058.5436 without restraints) Performing minimization step: 2071. Total energy = 9063.1649 kcal/mol (9055.3647 without restraints) Performing minimization step: 2072. Total energy = 9059.9861 kcal/mol (9052.1876 without restraints) Performing minimization step: 2073. Total energy = 9056.8092 kcal/mol (9049.0123 without restraints) Performing minimization step: 2074. Total energy = 9053.6340 kcal/mol (9045.8387 without restraints) Performing minimization step: 2075. Total energy = 9050.4608 kcal/mol (9042.6673 without restraints) Performing minimization step: 2076. Total energy = 9047.2896 kcal/mol (9039.4977 without restraints) Performing minimization step: 2077. Total energy = 9044.1203 kcal/mol (9036.3301 without restraints) Performing minimization step: 2078. Total energy = 9040.9527 kcal/mol (9033.1642 without restraints) Performing minimization step: 2079. Total energy = 9037.7872 kcal/mol (9030.0004 without restraints) Performing minimization step: 2080. Total energy = 9034.6232 kcal/mol (9026.8380 without restraints) Performing minimization step: 2081. Total energy = 9031.4607 kcal/mol (9023.6772 without restraints) Performing minimization step: 2082. Total energy = 9028.3007 kcal/mol (9020.5189 without restraints) Performing minimization step: 2083. Total energy = 9025.1420 kcal/mol (9017.3618 without restraints) Performing minimization step: 2084. Total energy = 9021.9855 kcal/mol (9014.2069 without restraints) Performing minimization step: 2085. Total energy = 9018.8302 kcal/mol (9011.0532 without restraints) Performing minimization step: 2086. Total energy = 9015.6771 kcal/mol (9007.9019 without restraints) Performing minimization step: 2087. Total energy = 9012.5258 kcal/mol (9004.7523 without restraints) Performing minimization step: 2088. Total energy = 9009.3770 kcal/mol (9001.6051 without restraints) Performing minimization step: 2089. Total energy = 9006.2296 kcal/mol (8998.4595 without restraints) Performing minimization step: 2090. Total energy = 9003.0846 kcal/mol (8995.3160 without restraints) Performing minimization step: 2091. Total energy = 8999.9410 kcal/mol (8992.1741 without restraints) Performing minimization step: 2092. Total energy = 8996.7987 kcal/mol (8989.0334 without restraints) Performing minimization step: 2093. Total energy = 8993.6580 kcal/mol (8985.8943 without restraints) Performing minimization step: 2094. Total energy = 8990.5190 kcal/mol (8982.7570 without restraints) Performing minimization step: 2095. Total energy = 8987.3820 kcal/mol (8979.6216 without restraints) Performing minimization step: 2096. Total energy = 8984.2468 kcal/mol (8976.4882 without restraints) Performing minimization step: 2097. Total energy = 8981.1132 kcal/mol (8973.3561 without restraints) Performing minimization step: 2098. Total energy = 8977.9813 kcal/mol (8970.2259 without restraints) Performing minimization step: 2099. Total energy = 8974.8515 kcal/mol (8967.0977 without restraints) Performing minimization step: 2100. Total energy = 8971.7231 kcal/mol (8963.9709 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 8968.5965 kcal/mol (8960.8460 without restraints) Performing minimization step: 2102. Total energy = 8965.4723 kcal/mol (8957.7235 without restraints) Performing minimization step: 2103. Total energy = 8962.3495 kcal/mol (8954.6022 without restraints) Performing minimization step: 2104. Total energy = 8959.2278 kcal/mol (8951.4822 without restraints) Performing minimization step: 2105. Total energy = 8956.1081 kcal/mol (8948.3642 without restraints) Performing minimization step: 2106. Total energy = 8952.9903 kcal/mol (8945.2484 without restraints) Performing minimization step: 2107. Total energy = 8949.8746 kcal/mol (8942.1340 without restraints) Performing minimization step: 2108. Total energy = 8946.7600 kcal/mol (8939.0208 without restraints) Performing minimization step: 2109. Total energy = 8943.6470 kcal/mol (8935.9098 without restraints) Performing minimization step: 2110. Total energy = 8940.5361 kcal/mol (8932.8003 without restraints) Performing minimization step: 2111. Total energy = 8937.4266 kcal/mol (8929.6925 without restraints) Performing minimization step: 2112. Total energy = 8934.3190 kcal/mol (8926.5865 without restraints) Performing minimization step: 2113. Total energy = 8931.2130 kcal/mol (8923.4822 without restraints) Performing minimization step: 2114. Total energy = 8928.1085 kcal/mol (8920.3793 without restraints) Performing minimization step: 2115. Total energy = 8925.0057 kcal/mol (8917.2781 without restraints) Performing minimization step: 2116. Total energy = 8921.9046 kcal/mol (8914.1786 without restraints) Performing minimization step: 2117. Total energy = 8918.8051 kcal/mol (8911.0808 without restraints) Performing minimization step: 2118. Total energy = 8915.7077 kcal/mol (8907.9850 without restraints) Performing minimization step: 2119. Total energy = 8912.6117 kcal/mol (8904.8906 without restraints) Performing minimization step: 2120. Total energy = 8909.5171 kcal/mol (8901.7976 without restraints) Performing minimization step: 2121. Total energy = 8906.4247 kcal/mol (8898.7068 without restraints) Performing minimization step: 2122. Total energy = 8903.3338 kcal/mol (8895.6175 without restraints) Performing minimization step: 2123. Total energy = 8900.2441 kcal/mol (8892.5294 without restraints) Performing minimization step: 2124. Total energy = 8897.1560 kcal/mol (8889.4430 without restraints) Performing minimization step: 2125. Total energy = 8894.0694 kcal/mol (8886.3580 without restraints) Performing minimization step: 2126. Total energy = 8890.9850 kcal/mol (8883.2754 without restraints) Performing minimization step: 2127. Total energy = 8887.9021 kcal/mol (8880.1938 without restraints) Performing minimization step: 2128. Total energy = 8884.8203 kcal/mol (8877.1138 without restraints) Performing minimization step: 2129. Total energy = 8881.7404 kcal/mol (8874.0356 without restraints) Performing minimization step: 2130. Total energy = 8878.6621 kcal/mol (8870.9587 without restraints) Performing minimization step: 2131. Total energy = 8875.5856 kcal/mol (8867.8839 without restraints) Performing minimization step: 2132. Total energy = 8872.5107 kcal/mol (8864.8107 without restraints) Performing minimization step: 2133. Total energy = 8869.4373 kcal/mol (8861.7388 without restraints) Performing minimization step: 2134. Total energy = 8866.3654 kcal/mol (8858.6686 without restraints) Performing minimization step: 2135. Total energy = 8863.2949 kcal/mol (8855.5996 without restraints) Performing minimization step: 2136. Total energy = 8860.2259 kcal/mol (8852.5322 without restraints) Performing minimization step: 2137. Total energy = 8857.1585 kcal/mol (8849.4664 without restraints) Performing minimization step: 2138. Total energy = 8854.0924 kcal/mol (8846.4019 without restraints) Performing minimization step: 2139. Total energy = 8851.0281 kcal/mol (8843.3392 without restraints) Performing minimization step: 2140. Total energy = 8847.9655 kcal/mol (8840.2782 without restraints) Performing minimization step: 2141. Total energy = 8844.9042 kcal/mol (8837.2185 without restraints) Performing minimization step: 2142. Total energy = 8841.8444 kcal/mol (8834.1603 without restraints) Performing minimization step: 2143. Total energy = 8838.7864 kcal/mol (8831.1039 without restraints) Performing minimization step: 2144. Total energy = 8835.7298 kcal/mol (8828.0489 without restraints) Performing minimization step: 2145. Total energy = 8832.6746 kcal/mol (8824.9952 without restraints) Performing minimization step: 2146. Total energy = 8829.6209 kcal/mol (8821.9431 without restraints) Performing minimization step: 2147. Total energy = 8826.5693 kcal/mol (8818.8932 without restraints) Performing minimization step: 2148. Total energy = 8823.5187 kcal/mol (8815.8442 without restraints) Performing minimization step: 2149. Total energy = 8820.4699 kcal/mol (8812.7969 without restraints) Performing minimization step: 2150. Total energy = 8817.4227 kcal/mol (8809.7514 without restraints) Performing minimization step: 2151. Total energy = 8814.3764 kcal/mol (8806.7066 without restraints) Performing minimization step: 2152. Total energy = 8811.3316 kcal/mol (8803.6634 without restraints) Performing minimization step: 2153. Total energy = 8808.2885 kcal/mol (8800.6219 without restraints) Performing minimization step: 2154. Total energy = 8805.2476 kcal/mol (8797.5826 without restraints) Performing minimization step: 2155. Total energy = 8802.2074 kcal/mol (8794.5440 without restraints) Performing minimization step: 2156. Total energy = 8799.1690 kcal/mol (8791.5071 without restraints) Performing minimization step: 2157. Total energy = 8796.1318 kcal/mol (8788.4715 without restraints) Performing minimization step: 2158. Total energy = 8793.0962 kcal/mol (8785.4375 without restraints) Performing minimization step: 2159. Total energy = 8790.0619 kcal/mol (8782.4048 without restraints) Performing minimization step: 2160. Total energy = 8787.0289 kcal/mol (8779.3734 without restraints) Performing minimization step: 2161. Total energy = 8783.9979 kcal/mol (8776.3439 without restraints) Performing minimization step: 2162. Total energy = 8780.9680 kcal/mol (8773.3157 without restraints) Performing minimization step: 2163. Total energy = 8777.9398 kcal/mol (8770.2890 without restraints) Performing minimization step: 2164. Total energy = 8774.9127 kcal/mol (8767.2635 without restraints) Performing minimization step: 2165. Total energy = 8771.8870 kcal/mol (8764.2394 without restraints) Performing minimization step: 2166. Total energy = 8768.8630 kcal/mol (8761.2169 without restraints) Performing minimization step: 2167. Total energy = 8765.8405 kcal/mol (8758.1961 without restraints) Performing minimization step: 2168. Total energy = 8762.8197 kcal/mol (8755.1767 without restraints) Performing minimization step: 2169. Total energy = 8759.7998 kcal/mol (8752.1584 without restraints) Performing minimization step: 2170. Total energy = 8756.7812 kcal/mol (8749.1414 without restraints) Performing minimization step: 2171. Total energy = 8753.7645 kcal/mol (8746.1262 without restraints) Performing minimization step: 2172. Total energy = 8750.7488 kcal/mol (8743.1121 without restraints) Performing minimization step: 2173. Total energy = 8747.7346 kcal/mol (8740.0996 without restraints) Performing minimization step: 2174. Total energy = 8744.7218 kcal/mol (8737.0883 without restraints) Performing minimization step: 2175. Total energy = 8741.7103 kcal/mol (8734.0783 without restraints) Performing minimization step: 2176. Total energy = 8738.7004 kcal/mol (8731.0700 without restraints) Performing minimization step: 2177. Total energy = 8735.6915 kcal/mol (8728.0626 without restraints) Performing minimization step: 2178. Total energy = 8732.6843 kcal/mol (8725.0570 without restraints) Performing minimization step: 2179. Total energy = 8729.6783 kcal/mol (8722.0526 without restraints) Performing minimization step: 2180. Total energy = 8726.6737 kcal/mol (8719.0495 without restraints) Performing minimization step: 2181. Total energy = 8723.6706 kcal/mol (8716.0480 without restraints) Performing minimization step: 2182. Total energy = 8720.6688 kcal/mol (8713.0477 without restraints) Performing minimization step: 2183. Total energy = 8717.6682 kcal/mol (8710.0487 without restraints) Performing minimization step: 2184. Total energy = 8714.6693 kcal/mol (8707.0515 without restraints) Performing minimization step: 2185. Total energy = 8711.6719 kcal/mol (8704.0555 without restraints) Performing minimization step: 2186. Total energy = 8708.6754 kcal/mol (8701.0605 without restraints) Performing minimization step: 2187. Total energy = 8705.6804 kcal/mol (8698.0670 without restraints) Performing minimization step: 2188. Total energy = 8702.6866 kcal/mol (8695.0748 without restraints) Performing minimization step: 2189. Total energy = 8699.6943 kcal/mol (8692.0840 without restraints) Performing minimization step: 2190. Total energy = 8696.7036 kcal/mol (8689.0949 without restraints) Performing minimization step: 2191. Total energy = 8693.7141 kcal/mol (8686.1069 without restraints) Performing minimization step: 2192. Total energy = 8690.7258 kcal/mol (8683.1201 without restraints) Performing minimization step: 2193. Total energy = 8687.7388 kcal/mol (8680.1348 without restraints) Performing minimization step: 2194. Total energy = 8684.7530 kcal/mol (8677.1505 without restraints) Performing minimization step: 2195. Total energy = 8681.7687 kcal/mol (8674.1678 without restraints) Performing minimization step: 2196. Total energy = 8678.7857 kcal/mol (8671.1864 without restraints) Performing minimization step: 2197. Total energy = 8675.8038 kcal/mol (8668.2059 without restraints) Performing minimization step: 2198. Total energy = 8672.8233 kcal/mol (8665.2269 without restraints) Performing minimization step: 2199. Total energy = 8669.8444 kcal/mol (8662.2495 without restraints) Performing minimization step: 2200. Total energy = 8666.8666 kcal/mol (8659.2733 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 8663.8897 kcal/mol (8656.2979 without restraints) Performing minimization step: 2202. Total energy = 8660.9143 kcal/mol (8653.3241 without restraints) Performing minimization step: 2203. Total energy = 8657.9406 kcal/mol (8650.3521 without restraints) Performing minimization step: 2204. Total energy = 8654.9675 kcal/mol (8647.3802 without restraints) Performing minimization step: 2205. Total energy = 8651.9958 kcal/mol (8644.4102 without restraints) Performing minimization step: 2206. Total energy = 8649.0254 kcal/mol (8641.4413 without restraints) Performing minimization step: 2207. Total energy = 8646.0562 kcal/mol (8638.4737 without restraints) Performing minimization step: 2208. Total energy = 8643.0888 kcal/mol (8635.5077 without restraints) Performing minimization step: 2209. Total energy = 8640.1226 kcal/mol (8632.5432 without restraints) Performing minimization step: 2210. Total energy = 8637.1574 kcal/mol (8629.5794 without restraints) Performing minimization step: 2211. Total energy = 8634.1934 kcal/mol (8626.6169 without restraints) Performing minimization step: 2212. Total energy = 8631.2310 kcal/mol (8623.6561 without restraints) Performing minimization step: 2213. Total energy = 8628.2695 kcal/mol (8620.6961 without restraints) Performing minimization step: 2214. Total energy = 8625.3094 kcal/mol (8617.7375 without restraints) Performing minimization step: 2215. Total energy = 8622.3506 kcal/mol (8614.7803 without restraints) Performing minimization step: 2216. Total energy = 8619.3927 kcal/mol (8611.8238 without restraints) Performing minimization step: 2217. Total energy = 8616.4365 kcal/mol (8608.8691 without restraints) Performing minimization step: 2218. Total energy = 8613.4808 kcal/mol (8605.9150 without restraints) Performing minimization step: 2219. Total energy = 8610.5266 kcal/mol (8602.9623 without restraints) Performing minimization step: 2220. Total energy = 8607.5737 kcal/mol (8600.0108 without restraints) Performing minimization step: 2221. Total energy = 8604.6226 kcal/mol (8597.0613 without restraints) Performing minimization step: 2222. Total energy = 8601.6721 kcal/mol (8594.1123 without restraints) Performing minimization step: 2223. Total energy = 8598.7230 kcal/mol (8591.1647 without restraints) Performing minimization step: 2224. Total energy = 8595.7751 kcal/mol (8588.2183 without restraints) Performing minimization step: 2225. Total energy = 8592.8282 kcal/mol (8585.2730 without restraints) Performing minimization step: 2226. Total energy = 8589.8824 kcal/mol (8582.3285 without restraints) Performing minimization step: 2227. Total energy = 8586.9378 kcal/mol (8579.3856 without restraints) Performing minimization step: 2228. Total energy = 8583.9945 kcal/mol (8576.4437 without restraints) Performing minimization step: 2229. Total energy = 8581.0524 kcal/mol (8573.5031 without restraints) Performing minimization step: 2230. Total energy = 8578.1114 kcal/mol (8570.5637 without restraints) Performing minimization step: 2231. Total energy = 8575.1717 kcal/mol (8567.6255 without restraints) Performing minimization step: 2232. Total energy = 8572.2331 kcal/mol (8564.6884 without restraints) Performing minimization step: 2233. Total energy = 8569.2957 kcal/mol (8561.7525 without restraints) Performing minimization step: 2234. Total energy = 8566.3593 kcal/mol (8558.8176 without restraints) Performing minimization step: 2235. Total energy = 8563.4244 kcal/mol (8555.8842 without restraints) Performing minimization step: 2236. Total energy = 8560.4909 kcal/mol (8552.9522 without restraints) Performing minimization step: 2237. Total energy = 8557.5580 kcal/mol (8550.0208 without restraints) Performing minimization step: 2238. Total energy = 8554.6264 kcal/mol (8547.0906 without restraints) Performing minimization step: 2239. Total energy = 8551.6959 kcal/mol (8544.1617 without restraints) Performing minimization step: 2240. Total energy = 8548.7666 kcal/mol (8541.2340 without restraints) Performing minimization step: 2241. Total energy = 8545.8385 kcal/mol (8538.3073 without restraints) Performing minimization step: 2242. Total energy = 8542.9116 kcal/mol (8535.3818 without restraints) Performing minimization step: 2243. Total energy = 8539.9860 kcal/mol (8532.4577 without restraints) Performing minimization step: 2244. Total energy = 8537.0614 kcal/mol (8529.5347 without restraints) Performing minimization step: 2245. Total energy = 8534.1379 kcal/mol (8526.6126 without restraints) Performing minimization step: 2246. Total energy = 8531.2154 kcal/mol (8523.6916 without restraints) Performing minimization step: 2247. Total energy = 8528.2939 kcal/mol (8520.7716 without restraints) Performing minimization step: 2248. Total energy = 8525.3737 kcal/mol (8517.8528 without restraints) Performing minimization step: 2249. Total energy = 8522.4551 kcal/mol (8514.9357 without restraints) Performing minimization step: 2250. Total energy = 8519.5373 kcal/mol (8512.0195 without restraints) Performing minimization step: 2251. Total energy = 8516.6205 kcal/mol (8509.1041 without restraints) Performing minimization step: 2252. Total energy = 8513.7047 kcal/mol (8506.1898 without restraints) Performing minimization step: 2253. Total energy = 8510.7899 kcal/mol (8503.2763 without restraints) Performing minimization step: 2254. Total energy = 8507.8764 kcal/mol (8500.3644 without restraints) Performing minimization step: 2255. Total energy = 8504.9639 kcal/mol (8497.4534 without restraints) Performing minimization step: 2256. Total energy = 8502.0523 kcal/mol (8494.5433 without restraints) Performing minimization step: 2257. Total energy = 8499.1420 kcal/mol (8491.6345 without restraints) Performing minimization step: 2258. Total energy = 8496.2329 kcal/mol (8488.7268 without restraints) Performing minimization step: 2259. Total energy = 8493.3248 kcal/mol (8485.8202 without restraints) Performing minimization step: 2260. Total energy = 8490.4181 kcal/mol (8482.9150 without restraints) Performing minimization step: 2261. Total energy = 8487.5123 kcal/mol (8480.0108 without restraints) Performing minimization step: 2262. Total energy = 8484.6076 kcal/mol (8477.1075 without restraints) Performing minimization step: 2263. Total energy = 8481.7043 kcal/mol (8474.2056 without restraints) Performing minimization step: 2264. Total energy = 8478.8018 kcal/mol (8471.3045 without restraints) Performing minimization step: 2265. Total energy = 8475.9002 kcal/mol (8468.4045 without restraints) Performing minimization step: 2266. Total energy = 8472.9998 kcal/mol (8465.5055 without restraints) Performing minimization step: 2267. Total energy = 8470.1004 kcal/mol (8462.6076 without restraints) Performing minimization step: 2268. Total energy = 8467.2014 kcal/mol (8459.7101 without restraints) Performing minimization step: 2269. Total energy = 8464.3039 kcal/mol (8456.8140 without restraints) Performing minimization step: 2270. Total energy = 8461.4077 kcal/mol (8453.9192 without restraints) Performing minimization step: 2271. Total energy = 8458.5126 kcal/mol (8451.0258 without restraints) Performing minimization step: 2272. Total energy = 8455.6183 kcal/mol (8448.1330 without restraints) Performing minimization step: 2273. Total energy = 8452.7254 kcal/mol (8445.2414 without restraints) Performing minimization step: 2274. Total energy = 8449.8333 kcal/mol (8442.3507 without restraints) Performing minimization step: 2275. Total energy = 8446.9422 kcal/mol (8439.4611 without restraints) Performing minimization step: 2276. Total energy = 8444.0522 kcal/mol (8436.5726 without restraints) Performing minimization step: 2277. Total energy = 8441.1634 kcal/mol (8433.6852 without restraints) Performing minimization step: 2278. Total energy = 8438.2760 kcal/mol (8430.7992 without restraints) Performing minimization step: 2279. Total energy = 8435.3894 kcal/mol (8427.9141 without restraints) Performing minimization step: 2280. Total energy = 8432.5035 kcal/mol (8425.0296 without restraints) Performing minimization step: 2281. Total energy = 8429.6188 kcal/mol (8422.1463 without restraints) Performing minimization step: 2282. Total energy = 8426.7350 kcal/mol (8419.2641 without restraints) Performing minimization step: 2283. Total energy = 8423.8521 kcal/mol (8416.3826 without restraints) Performing minimization step: 2284. Total energy = 8420.9704 kcal/mol (8413.5024 without restraints) Performing minimization step: 2285. Total energy = 8418.0902 kcal/mol (8410.6236 without restraints) Performing minimization step: 2286. Total energy = 8415.2104 kcal/mol (8407.7453 without restraints) Performing minimization step: 2287. Total energy = 8412.3318 kcal/mol (8404.8681 without restraints) Performing minimization step: 2288. Total energy = 8409.4542 kcal/mol (8401.9919 without restraints) Performing minimization step: 2289. Total energy = 8406.5779 kcal/mol (8399.1172 without restraints) Performing minimization step: 2290. Total energy = 8403.7026 kcal/mol (8396.2433 without restraints) Performing minimization step: 2291. Total energy = 8400.8283 kcal/mol (8393.3704 without restraints) Performing minimization step: 2292. Total energy = 8397.9547 kcal/mol (8390.4982 without restraints) Performing minimization step: 2293. Total energy = 8395.0820 kcal/mol (8387.6270 without restraints) Performing minimization step: 2294. Total energy = 8392.2102 kcal/mol (8384.7566 without restraints) Performing minimization step: 2295. Total energy = 8389.3397 kcal/mol (8381.8876 without restraints) Performing minimization step: 2296. Total energy = 8386.4704 kcal/mol (8379.0197 without restraints) Performing minimization step: 2297. Total energy = 8383.6021 kcal/mol (8376.1528 without restraints) Performing minimization step: 2298. Total energy = 8380.7344 kcal/mol (8373.2866 without restraints) Performing minimization step: 2299. Total energy = 8377.8676 kcal/mol (8370.4212 without restraints) Performing minimization step: 2300. Total energy = 8375.0023 kcal/mol (8367.5573 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 8372.1379 kcal/mol (8364.6946 without restraints) Performing minimization step: 2302. Total energy = 8369.2744 kcal/mol (8361.8323 without restraints) Performing minimization step: 2303. Total energy = 8366.4118 kcal/mol (8358.9711 without restraints) Performing minimization step: 2304. Total energy = 8363.5499 kcal/mol (8356.1107 without restraints) Performing minimization step: 2305. Total energy = 8360.6894 kcal/mol (8353.2516 without restraints) Performing minimization step: 2306. Total energy = 8357.8298 kcal/mol (8350.3934 without restraints) Performing minimization step: 2307. Total energy = 8354.9710 kcal/mol (8347.5360 without restraints) Performing minimization step: 2308. Total energy = 8352.1134 kcal/mol (8344.6799 without restraints) Performing minimization step: 2309. Total energy = 8349.2562 kcal/mol (8341.8240 without restraints) Performing minimization step: 2310. Total energy = 8346.4007 kcal/mol (8338.9700 without restraints) Performing minimization step: 2311. Total energy = 8343.5460 kcal/mol (8336.1167 without restraints) Performing minimization step: 2312. Total energy = 8340.6920 kcal/mol (8333.2641 without restraints) Performing minimization step: 2313. Total energy = 8337.8388 kcal/mol (8330.4125 without restraints) Performing minimization step: 2314. Total energy = 8334.9866 kcal/mol (8327.5616 without restraints) Performing minimization step: 2315. Total energy = 8332.1355 kcal/mol (8324.7119 without restraints) Performing minimization step: 2316. Total energy = 8329.2853 kcal/mol (8321.8631 without restraints) Performing minimization step: 2317. Total energy = 8326.4363 kcal/mol (8319.0158 without restraints) Performing minimization step: 2318. Total energy = 8323.5882 kcal/mol (8316.1689 without restraints) Performing minimization step: 2319. Total energy = 8320.7411 kcal/mol (8313.3232 without restraints) Performing minimization step: 2320. Total energy = 8317.8947 kcal/mol (8310.4782 without restraints) Performing minimization step: 2321. Total energy = 8315.0493 kcal/mol (8307.6343 without restraints) Performing minimization step: 2322. Total energy = 8312.2049 kcal/mol (8304.7914 without restraints) Performing minimization step: 2323. Total energy = 8309.3614 kcal/mol (8301.9492 without restraints) Performing minimization step: 2324. Total energy = 8306.5191 kcal/mol (8299.1084 without restraints) Performing minimization step: 2325. Total energy = 8303.6773 kcal/mol (8296.2677 without restraints) Performing minimization step: 2326. Total energy = 8300.8363 kcal/mol (8293.4282 without restraints) Performing minimization step: 2327. Total energy = 8297.9963 kcal/mol (8290.5897 without restraints) Performing minimization step: 2328. Total energy = 8295.1572 kcal/mol (8287.7519 without restraints) Performing minimization step: 2329. Total energy = 8292.3193 kcal/mol (8284.9156 without restraints) Performing minimization step: 2330. Total energy = 8289.4824 kcal/mol (8282.0801 without restraints) Performing minimization step: 2331. Total energy = 8286.6468 kcal/mol (8279.2459 without restraints) Performing minimization step: 2332. Total energy = 8283.8118 kcal/mol (8276.4122 without restraints) Performing minimization step: 2333. Total energy = 8280.9774 kcal/mol (8273.5793 without restraints) Performing minimization step: 2334. Total energy = 8278.1440 kcal/mol (8270.7472 without restraints) Performing minimization step: 2335. Total energy = 8275.3119 kcal/mol (8267.9165 without restraints) Performing minimization step: 2336. Total energy = 8272.4803 kcal/mol (8265.0863 without restraints) Performing minimization step: 2337. Total energy = 8269.6496 kcal/mol (8262.2570 without restraints) Performing minimization step: 2338. Total energy = 8266.8198 kcal/mol (8259.4286 without restraints) Performing minimization step: 2339. Total energy = 8263.9903 kcal/mol (8256.6006 without restraints) Performing minimization step: 2340. Total energy = 8261.1623 kcal/mol (8253.7740 without restraints) Performing minimization step: 2341. Total energy = 8258.3353 kcal/mol (8250.9483 without restraints) Performing minimization step: 2342. Total energy = 8255.5093 kcal/mol (8248.1237 without restraints) Performing minimization step: 2343. Total energy = 8252.6841 kcal/mol (8245.3000 without restraints) Performing minimization step: 2344. Total energy = 8249.8599 kcal/mol (8242.4773 without restraints) Performing minimization step: 2345. Total energy = 8247.0369 kcal/mol (8239.6556 without restraints) Performing minimization step: 2346. Total energy = 8244.2143 kcal/mol (8236.8345 without restraints) Performing minimization step: 2347. Total energy = 8241.3925 kcal/mol (8234.0139 without restraints) Performing minimization step: 2348. Total energy = 8238.5718 kcal/mol (8231.1946 without restraints) Performing minimization step: 2349. Total energy = 8235.7524 kcal/mol (8228.3766 without restraints) Performing minimization step: 2350. Total energy = 8232.9338 kcal/mol (8225.5594 without restraints) Performing minimization step: 2351. Total energy = 8230.1159 kcal/mol (8222.7429 without restraints) Performing minimization step: 2352. Total energy = 8227.2988 kcal/mol (8219.9271 without restraints) Performing minimization step: 2353. Total energy = 8224.4825 kcal/mol (8217.1122 without restraints) Performing minimization step: 2354. Total energy = 8221.6669 kcal/mol (8214.2980 without restraints) Performing minimization step: 2355. Total energy = 8218.8521 kcal/mol (8211.4846 without restraints) Performing minimization step: 2356. Total energy = 8216.0384 kcal/mol (8208.6723 without restraints) Performing minimization step: 2357. Total energy = 8213.2258 kcal/mol (8205.8611 without restraints) Performing minimization step: 2358. Total energy = 8210.4140 kcal/mol (8203.0507 without restraints) Performing minimization step: 2359. Total energy = 8207.6029 kcal/mol (8200.2410 without restraints) Performing minimization step: 2360. Total energy = 8204.7930 kcal/mol (8197.4325 without restraints) Performing minimization step: 2361. Total energy = 8201.9835 kcal/mol (8194.6244 without restraints) Performing minimization step: 2362. Total energy = 8199.1751 kcal/mol (8191.8173 without restraints) Performing minimization step: 2363. Total energy = 8196.3674 kcal/mol (8189.0110 without restraints) Performing minimization step: 2364. Total energy = 8193.5607 kcal/mol (8186.2057 without restraints) Performing minimization step: 2365. Total energy = 8190.7551 kcal/mol (8183.4014 without restraints) Performing minimization step: 2366. Total energy = 8187.9499 kcal/mol (8180.5976 without restraints) Performing minimization step: 2367. Total energy = 8185.1455 kcal/mol (8177.7946 without restraints) Performing minimization step: 2368. Total energy = 8182.3423 kcal/mol (8174.9927 without restraints) Performing minimization step: 2369. Total energy = 8179.5399 kcal/mol (8172.1917 without restraints) Performing minimization step: 2370. Total energy = 8176.7379 kcal/mol (8169.3911 without restraints) Performing minimization step: 2371. Total energy = 8173.9376 kcal/mol (8166.5923 without restraints) Performing minimization step: 2372. Total energy = 8171.1379 kcal/mol (8163.7938 without restraints) Performing minimization step: 2373. Total energy = 8168.3389 kcal/mol (8160.9962 without restraints) Performing minimization step: 2374. Total energy = 8165.5413 kcal/mol (8158.2000 without restraints) Performing minimization step: 2375. Total energy = 8162.7440 kcal/mol (8155.4041 without restraints) Performing minimization step: 2376. Total energy = 8159.9476 kcal/mol (8152.6091 without restraints) Performing minimization step: 2377. Total energy = 8157.1521 kcal/mol (8149.8149 without restraints) Performing minimization step: 2378. Total energy = 8154.3572 kcal/mol (8147.0214 without restraints) Performing minimization step: 2379. Total energy = 8151.5634 kcal/mol (8144.2289 without restraints) Performing minimization step: 2380. Total energy = 8148.7704 kcal/mol (8141.4373 without restraints) Performing minimization step: 2381. Total energy = 8145.9783 kcal/mol (8138.6465 without restraints) Performing minimization step: 2382. Total energy = 8143.1872 kcal/mol (8135.8568 without restraints) Performing minimization step: 2383. Total energy = 8140.3971 kcal/mol (8133.0681 without restraints) Performing minimization step: 2384. Total energy = 8137.6072 kcal/mol (8130.2792 without restraints) Performing minimization step: 2385. Total energy = 8134.8187 kcal/mol (8127.4925 without restraints) Performing minimization step: 2386. Total energy = 8132.0309 kcal/mol (8124.7059 without restraints) Performing minimization step: 2387. Total energy = 8129.2442 kcal/mol (8121.9207 without restraints) Performing minimization step: 2388. Total energy = 8126.4582 kcal/mol (8119.1361 without restraints) Performing minimization step: 2389. Total energy = 8123.6730 kcal/mol (8116.3522 without restraints) Performing minimization step: 2390. Total energy = 8120.8890 kcal/mol (8113.5695 without restraints) Performing minimization step: 2391. Total energy = 8118.1055 kcal/mol (8110.7874 without restraints) Performing minimization step: 2392. Total energy = 8115.3229 kcal/mol (8108.0061 without restraints) Performing minimization step: 2393. Total energy = 8112.5406 kcal/mol (8105.2252 without restraints) Performing minimization step: 2394. Total energy = 8109.7597 kcal/mol (8102.4456 without restraints) Performing minimization step: 2395. Total energy = 8106.9796 kcal/mol (8099.6669 without restraints) Performing minimization step: 2396. Total energy = 8104.2001 kcal/mol (8096.8887 without restraints) Performing minimization step: 2397. Total energy = 8101.4214 kcal/mol (8094.1114 without restraints) Performing minimization step: 2398. Total energy = 8098.6434 kcal/mol (8091.3347 without restraints) Performing minimization step: 2399. Total energy = 8095.8664 kcal/mol (8088.5591 without restraints) Performing minimization step: 2400. Total energy = 8093.0902 kcal/mol (8085.7843 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 8090.3148 kcal/mol (8083.0101 without restraints) Performing minimization step: 2402. Total energy = 8087.5404 kcal/mol (8080.2371 without restraints) Performing minimization step: 2403. Total energy = 8084.7667 kcal/mol (8077.4648 without restraints) Performing minimization step: 2404. Total energy = 8081.9939 kcal/mol (8074.6933 without restraints) Performing minimization step: 2405. Total energy = 8079.2221 kcal/mol (8071.9229 without restraints) Performing minimization step: 2406. Total energy = 8076.4509 kcal/mol (8069.1531 without restraints) Performing minimization step: 2407. Total energy = 8073.6806 kcal/mol (8066.3841 without restraints) Performing minimization step: 2408. Total energy = 8070.9111 kcal/mol (8063.6160 without restraints) Performing minimization step: 2409. Total energy = 8068.1426 kcal/mol (8060.8488 without restraints) Performing minimization step: 2410. Total energy = 8065.3748 kcal/mol (8058.0823 without restraints) Performing minimization step: 2411. Total energy = 8062.6075 kcal/mol (8055.3164 without restraints) Performing minimization step: 2412. Total energy = 8059.8414 kcal/mol (8052.5516 without restraints) Performing minimization step: 2413. Total energy = 8057.0759 kcal/mol (8049.7876 without restraints) Performing minimization step: 2414. Total energy = 8054.3119 kcal/mol (8047.0248 without restraints) Performing minimization step: 2415. Total energy = 8051.5485 kcal/mol (8044.2628 without restraints) Performing minimization step: 2416. Total energy = 8048.7856 kcal/mol (8041.5012 without restraints) Performing minimization step: 2417. Total energy = 8046.0234 kcal/mol (8038.7402 without restraints) Performing minimization step: 2418. Total energy = 8043.2620 kcal/mol (8035.9803 without restraints) Performing minimization step: 2419. Total energy = 8040.5019 kcal/mol (8033.2215 without restraints) Performing minimization step: 2420. Total energy = 8037.7425 kcal/mol (8030.4634 without restraints) Performing minimization step: 2421. Total energy = 8034.9841 kcal/mol (8027.7063 without restraints) Performing minimization step: 2422. Total energy = 8032.2259 kcal/mol (8024.9495 without restraints) Performing minimization step: 2423. Total energy = 8029.4690 kcal/mol (8022.1941 without restraints) Performing minimization step: 2424. Total energy = 8026.7129 kcal/mol (8019.4391 without restraints) Performing minimization step: 2425. Total energy = 8023.9570 kcal/mol (8016.6845 without restraints) Performing minimization step: 2426. Total energy = 8021.2018 kcal/mol (8013.9308 without restraints) Performing minimization step: 2427. Total energy = 8018.4487 kcal/mol (8011.1790 without restraints) Performing minimization step: 2428. Total energy = 8015.6960 kcal/mol (8008.4276 without restraints) Performing minimization step: 2429. Total energy = 8012.9438 kcal/mol (8005.6767 without restraints) Performing minimization step: 2430. Total energy = 8010.1924 kcal/mol (8002.9266 without restraints) Performing minimization step: 2431. Total energy = 8007.4424 kcal/mol (8000.1779 without restraints) Performing minimization step: 2432. Total energy = 8004.6925 kcal/mol (7997.4294 without restraints) Performing minimization step: 2433. Total energy = 8001.9437 kcal/mol (7994.6822 without restraints) Performing minimization step: 2434. Total energy = 7999.1959 kcal/mol (7991.9355 without restraints) Performing minimization step: 2435. Total energy = 7996.4493 kcal/mol (7989.1902 without restraints) Performing minimization step: 2436. Total energy = 7993.7031 kcal/mol (7986.4456 without restraints) Performing minimization step: 2437. Total energy = 7990.9577 kcal/mol (7983.7012 without restraints) Performing minimization step: 2438. Total energy = 7988.2127 kcal/mol (7980.9576 without restraints) Performing minimization step: 2439. Total energy = 7985.4687 kcal/mol (7978.2148 without restraints) Performing minimization step: 2440. Total energy = 7982.7257 kcal/mol (7975.4732 without restraints) Performing minimization step: 2441. Total energy = 7979.9833 kcal/mol (7972.7321 without restraints) Performing minimization step: 2442. Total energy = 7977.2423 kcal/mol (7969.9927 without restraints) Performing minimization step: 2443. Total energy = 7974.5019 kcal/mol (7967.2536 without restraints) Performing minimization step: 2444. Total energy = 7971.7622 kcal/mol (7964.5151 without restraints) Performing minimization step: 2445. Total energy = 7969.0232 kcal/mol (7961.7774 without restraints) Performing minimization step: 2446. Total energy = 7966.2848 kcal/mol (7959.0402 without restraints) Performing minimization step: 2447. Total energy = 7963.5475 kcal/mol (7956.3043 without restraints) Performing minimization step: 2448. Total energy = 7960.8109 kcal/mol (7953.5689 without restraints) Performing minimization step: 2449. Total energy = 7958.0754 kcal/mol (7950.8349 without restraints) Performing minimization step: 2450. Total energy = 7955.3404 kcal/mol (7948.1011 without restraints) Performing minimization step: 2451. Total energy = 7952.6063 kcal/mol (7945.3684 without restraints) Performing minimization step: 2452. Total energy = 7949.8729 kcal/mol (7942.6362 without restraints) Performing minimization step: 2453. Total energy = 7947.1404 kcal/mol (7939.9052 without restraints) Performing minimization step: 2454. Total energy = 7944.4085 kcal/mol (7937.1745 without restraints) Performing minimization step: 2455. Total energy = 7941.6774 kcal/mol (7934.4447 without restraints) Performing minimization step: 2456. Total energy = 7938.9473 kcal/mol (7931.7159 without restraints) Performing minimization step: 2457. Total energy = 7936.2177 kcal/mol (7928.9877 without restraints) Performing minimization step: 2458. Total energy = 7933.4891 kcal/mol (7926.2603 without restraints) Performing minimization step: 2459. Total energy = 7930.7615 kcal/mol (7923.5340 without restraints) Performing minimization step: 2460. Total energy = 7928.0343 kcal/mol (7920.8082 without restraints) Performing minimization step: 2461. Total energy = 7925.3084 kcal/mol (7918.0835 without restraints) Performing minimization step: 2462. Total energy = 7922.5832 kcal/mol (7915.3596 without restraints) Performing minimization step: 2463. Total energy = 7919.8590 kcal/mol (7912.6367 without restraints) Performing minimization step: 2464. Total energy = 7917.1353 kcal/mol (7909.9143 without restraints) Performing minimization step: 2465. Total energy = 7914.4126 kcal/mol (7907.1932 without restraints) Performing minimization step: 2466. Total energy = 7911.6909 kcal/mol (7904.4726 without restraints) Performing minimization step: 2467. Total energy = 7908.9696 kcal/mol (7901.7526 without restraints) Performing minimization step: 2468. Total energy = 7906.2497 kcal/mol (7899.0340 without restraints) Performing minimization step: 2469. Total energy = 7903.5301 kcal/mol (7896.3157 without restraints) Performing minimization step: 2470. Total energy = 7900.8112 kcal/mol (7893.5980 without restraints) Performing minimization step: 2471. Total energy = 7898.0935 kcal/mol (7890.8817 without restraints) Performing minimization step: 2472. Total energy = 7895.3759 kcal/mol (7888.1655 without restraints) Performing minimization step: 2473. Total energy = 7892.6593 kcal/mol (7885.4501 without restraints) Performing minimization step: 2474. Total energy = 7889.9437 kcal/mol (7882.7359 without restraints) Performing minimization step: 2475. Total energy = 7887.2289 kcal/mol (7880.0224 without restraints) Performing minimization step: 2476. Total energy = 7884.5146 kcal/mol (7877.3093 without restraints) Performing minimization step: 2477. Total energy = 7881.8014 kcal/mol (7874.5975 without restraints) Performing minimization step: 2478. Total energy = 7879.0892 kcal/mol (7871.8866 without restraints) Performing minimization step: 2479. Total energy = 7876.3778 kcal/mol (7869.1764 without restraints) Performing minimization step: 2480. Total energy = 7873.6673 kcal/mol (7866.4673 without restraints) Performing minimization step: 2481. Total energy = 7870.9575 kcal/mol (7863.7588 without restraints) Performing minimization step: 2482. Total energy = 7868.2485 kcal/mol (7861.0510 without restraints) Performing minimization step: 2483. Total energy = 7865.5404 kcal/mol (7858.3445 without restraints) Performing minimization step: 2484. Total energy = 7862.8333 kcal/mol (7855.6384 without restraints) Performing minimization step: 2485. Total energy = 7860.1269 kcal/mol (7852.9334 without restraints) Performing minimization step: 2486. Total energy = 7857.4210 kcal/mol (7850.2287 without restraints) Performing minimization step: 2487. Total energy = 7854.7159 kcal/mol (7847.5248 without restraints) Performing minimization step: 2488. Total energy = 7852.0118 kcal/mol (7844.8221 without restraints) Performing minimization step: 2489. Total energy = 7849.3086 kcal/mol (7842.1202 without restraints) Performing minimization step: 2490. Total energy = 7846.6062 kcal/mol (7839.4191 without restraints) Performing minimization step: 2491. Total energy = 7843.9046 kcal/mol (7836.7188 without restraints) Performing minimization step: 2492. Total energy = 7841.2040 kcal/mol (7834.0195 without restraints) Performing minimization step: 2493. Total energy = 7838.5039 kcal/mol (7831.3208 without restraints) Performing minimization step: 2494. Total energy = 7835.8052 kcal/mol (7828.6233 without restraints) Performing minimization step: 2495. Total energy = 7833.1075 kcal/mol (7825.9269 without restraints) Performing minimization step: 2496. Total energy = 7830.4103 kcal/mol (7823.2309 without restraints) Performing minimization step: 2497. Total energy = 7827.7137 kcal/mol (7820.5358 without restraints) Performing minimization step: 2498. Total energy = 7825.0181 kcal/mol (7817.8415 without restraints) Performing minimization step: 2499. Total energy = 7822.3233 kcal/mol (7815.1478 without restraints) Performing minimization step: 2500. Total energy = 7819.6291 kcal/mol (7812.4549 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 7816.9363 kcal/mol (7809.7636 without restraints) Performing minimization step: 2502. Total energy = 7814.2443 kcal/mol (7807.0728 without restraints) Performing minimization step: 2503. Total energy = 7811.5530 kcal/mol (7804.3827 without restraints) Performing minimization step: 2504. Total energy = 7808.8622 kcal/mol (7801.6931 without restraints) Performing minimization step: 2505. Total energy = 7806.1722 kcal/mol (7799.0044 without restraints) Performing minimization step: 2506. Total energy = 7803.4832 kcal/mol (7796.3168 without restraints) Performing minimization step: 2507. Total energy = 7800.7949 kcal/mol (7793.6298 without restraints) Performing minimization step: 2508. Total energy = 7798.1080 kcal/mol (7790.9442 without restraints) Performing minimization step: 2509. Total energy = 7795.4214 kcal/mol (7788.2588 without restraints) Performing minimization step: 2510. Total energy = 7792.7355 kcal/mol (7785.5742 without restraints) Performing minimization step: 2511. Total energy = 7790.0508 kcal/mol (7782.8907 without restraints) Performing minimization step: 2512. Total energy = 7787.3670 kcal/mol (7780.2083 without restraints) Performing minimization step: 2513. Total energy = 7784.6837 kcal/mol (7777.5262 without restraints) Performing minimization step: 2514. Total energy = 7782.0012 kcal/mol (7774.8450 without restraints) Performing minimization step: 2515. Total energy = 7779.3196 kcal/mol (7772.1647 without restraints) Performing minimization step: 2516. Total energy = 7776.6387 kcal/mol (7769.4850 without restraints) Performing minimization step: 2517. Total energy = 7773.9588 kcal/mol (7766.8064 without restraints) Performing minimization step: 2518. Total energy = 7771.2796 kcal/mol (7764.1285 without restraints) Performing minimization step: 2519. Total energy = 7768.6013 kcal/mol (7761.4515 without restraints) Performing minimization step: 2520. Total energy = 7765.9241 kcal/mol (7758.7756 without restraints) Performing minimization step: 2521. Total energy = 7763.2475 kcal/mol (7756.1002 without restraints) Performing minimization step: 2522. Total energy = 7760.5713 kcal/mol (7753.4254 without restraints) Performing minimization step: 2523. Total energy = 7757.8965 kcal/mol (7750.7519 without restraints) Performing minimization step: 2524. Total energy = 7755.2224 kcal/mol (7748.0790 without restraints) Performing minimization step: 2525. Total energy = 7752.5494 kcal/mol (7745.4073 without restraints) Performing minimization step: 2526. Total energy = 7749.8769 kcal/mol (7742.7361 without restraints) Performing minimization step: 2527. Total energy = 7747.2056 kcal/mol (7740.0663 without restraints) Performing minimization step: 2528. Total energy = 7744.5352 kcal/mol (7737.3970 without restraints) Performing minimization step: 2529. Total energy = 7741.8654 kcal/mol (7734.7285 without restraints) Performing minimization step: 2530. Total energy = 7739.1968 kcal/mol (7732.0612 without restraints) Performing minimization step: 2531. Total energy = 7736.5289 kcal/mol (7729.3946 without restraints) Performing minimization step: 2532. Total energy = 7733.8618 kcal/mol (7726.7286 without restraints) Performing minimization step: 2533. Total energy = 7731.1953 kcal/mol (7724.0635 without restraints) Performing minimization step: 2534. Total energy = 7728.5299 kcal/mol (7721.3995 without restraints) Performing minimization step: 2535. Total energy = 7725.8656 kcal/mol (7718.7364 without restraints) Performing minimization step: 2536. Total energy = 7723.2020 kcal/mol (7716.0741 without restraints) Performing minimization step: 2537. Total energy = 7720.5392 kcal/mol (7713.4124 without restraints) Performing minimization step: 2538. Total energy = 7717.8770 kcal/mol (7710.7515 without restraints) Performing minimization step: 2539. Total energy = 7715.2158 kcal/mol (7708.0915 without restraints) Performing minimization step: 2540. Total energy = 7712.5559 kcal/mol (7705.4333 without restraints) Performing minimization step: 2541. Total energy = 7709.8966 kcal/mol (7702.7748 without restraints) Performing minimization step: 2542. Total energy = 7707.2378 kcal/mol (7700.1174 without restraints) Performing minimization step: 2543. Total energy = 7704.5802 kcal/mol (7697.4611 without restraints) Performing minimization step: 2544. Total energy = 7701.9233 kcal/mol (7694.8054 without restraints) Performing minimization step: 2545. Total energy = 7699.2676 kcal/mol (7692.1510 without restraints) Performing minimization step: 2546. Total energy = 7696.6124 kcal/mol (7689.4971 without restraints) Performing minimization step: 2547. Total energy = 7693.9582 kcal/mol (7686.8441 without restraints) Performing minimization step: 2548. Total energy = 7691.3050 kcal/mol (7684.1922 without restraints) Performing minimization step: 2549. Total energy = 7688.6524 kcal/mol (7681.5409 without restraints) Performing minimization step: 2550. Total energy = 7686.0007 kcal/mol (7678.8905 without restraints) Performing minimization step: 2551. Total energy = 7683.3501 kcal/mol (7676.2412 without restraints) Performing minimization step: 2552. Total energy = 7680.7001 kcal/mol (7673.5924 without restraints) Performing minimization step: 2553. Total energy = 7678.0508 kcal/mol (7670.9443 without restraints) Performing minimization step: 2554. Total energy = 7675.4025 kcal/mol (7668.2973 without restraints) Performing minimization step: 2555. Total energy = 7672.7552 kcal/mol (7665.6512 without restraints) Performing minimization step: 2556. Total energy = 7670.1089 kcal/mol (7663.0062 without restraints) Performing minimization step: 2557. Total energy = 7667.4633 kcal/mol (7660.3619 without restraints) Performing minimization step: 2558. Total energy = 7664.8186 kcal/mol (7657.7185 without restraints) Performing minimization step: 2559. Total energy = 7662.1748 kcal/mol (7655.0759 without restraints) Performing minimization step: 2560. Total energy = 7659.5321 kcal/mol (7652.4345 without restraints) Performing minimization step: 2561. Total energy = 7656.8901 kcal/mol (7649.7938 without restraints) Performing minimization step: 2562. Total energy = 7654.2491 kcal/mol (7647.1540 without restraints) Performing minimization step: 2563. Total energy = 7651.6086 kcal/mol (7644.5148 without restraints) Performing minimization step: 2564. Total energy = 7648.9692 kcal/mol (7641.8766 without restraints) Performing minimization step: 2565. Total energy = 7646.3311 kcal/mol (7639.2398 without restraints) Performing minimization step: 2566. Total energy = 7643.6939 kcal/mol (7636.6039 without restraints) Performing minimization step: 2567. Total energy = 7641.0576 kcal/mol (7633.9688 without restraints) Performing minimization step: 2568. Total energy = 7638.4219 kcal/mol (7631.3344 without restraints) Performing minimization step: 2569. Total energy = 7635.7871 kcal/mol (7628.7009 without restraints) Performing minimization step: 2570. Total energy = 7633.1535 kcal/mol (7626.0687 without restraints) Performing minimization step: 2571. Total energy = 7630.5206 kcal/mol (7623.4368 without restraints) Performing minimization step: 2572. Total energy = 7627.8880 kcal/mol (7620.8055 without restraints) Performing minimization step: 2573. Total energy = 7625.2568 kcal/mol (7618.1756 without restraints) Performing minimization step: 2574. Total energy = 7622.6268 kcal/mol (7615.5468 without restraints) Performing minimization step: 2575. Total energy = 7619.9974 kcal/mol (7612.9188 without restraints) Performing minimization step: 2576. Total energy = 7617.3691 kcal/mol (7610.2917 without restraints) Performing minimization step: 2577. Total energy = 7614.7414 kcal/mol (7607.6652 without restraints) Performing minimization step: 2578. Total energy = 7612.1146 kcal/mol (7605.0396 without restraints) Performing minimization step: 2579. Total energy = 7609.4885 kcal/mol (7602.4149 without restraints) Performing minimization step: 2580. Total energy = 7606.8638 kcal/mol (7599.7915 without restraints) Performing minimization step: 2581. Total energy = 7604.2395 kcal/mol (7597.1683 without restraints) Performing minimization step: 2582. Total energy = 7601.6161 kcal/mol (7594.5462 without restraints) Performing minimization step: 2583. Total energy = 7598.9942 kcal/mol (7591.9255 without restraints) Performing minimization step: 2584. Total energy = 7596.3724 kcal/mol (7589.3051 without restraints) Performing minimization step: 2585. Total energy = 7593.7520 kcal/mol (7586.6859 without restraints) Performing minimization step: 2586. Total energy = 7591.1325 kcal/mol (7584.0677 without restraints) Performing minimization step: 2587. Total energy = 7588.5139 kcal/mol (7581.4502 without restraints) Performing minimization step: 2588. Total energy = 7585.8961 kcal/mol (7578.8336 without restraints) Performing minimization step: 2589. Total energy = 7583.2789 kcal/mol (7576.2178 without restraints) Performing minimization step: 2590. Total energy = 7580.6629 kcal/mol (7573.6031 without restraints) Performing minimization step: 2591. Total energy = 7578.0478 kcal/mol (7570.9892 without restraints) Performing minimization step: 2592. Total energy = 7575.4336 kcal/mol (7568.3763 without restraints) Performing minimization step: 2593. Total energy = 7572.8210 kcal/mol (7565.7649 without restraints) Performing minimization step: 2594. Total energy = 7570.2089 kcal/mol (7563.1541 without restraints) Performing minimization step: 2595. Total energy = 7567.5981 kcal/mol (7560.5445 without restraints) Performing minimization step: 2596. Total energy = 7564.9880 kcal/mol (7557.9355 without restraints) Performing minimization step: 2597. Total energy = 7562.3785 kcal/mol (7555.3275 without restraints) Performing minimization step: 2598. Total energy = 7559.7700 kcal/mol (7552.7203 without restraints) Performing minimization step: 2599. Total energy = 7557.1624 kcal/mol (7550.1138 without restraints) Performing minimization step: 2600. Total energy = 7554.5557 kcal/mol (7547.5085 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 7551.9502 kcal/mol (7544.9042 without restraints) Performing minimization step: 2602. Total energy = 7549.3456 kcal/mol (7542.3007 without restraints) Performing minimization step: 2603. Total energy = 7546.7414 kcal/mol (7539.6978 without restraints) Performing minimization step: 2604. Total energy = 7544.1384 kcal/mol (7537.0961 without restraints) Performing minimization step: 2605. Total energy = 7541.5368 kcal/mol (7534.4957 without restraints) Performing minimization step: 2606. Total energy = 7538.9356 kcal/mol (7531.8958 without restraints) Performing minimization step: 2607. Total energy = 7536.3355 kcal/mol (7529.2970 without restraints) Performing minimization step: 2608. Total energy = 7533.7365 kcal/mol (7526.6991 without restraints) Performing minimization step: 2609. Total energy = 7531.1382 kcal/mol (7524.1021 without restraints) Performing minimization step: 2610. Total energy = 7528.5406 kcal/mol (7521.5058 without restraints) Performing minimization step: 2611. Total energy = 7525.9443 kcal/mol (7518.9107 without restraints) Performing minimization step: 2612. Total energy = 7523.3490 kcal/mol (7516.3167 without restraints) Performing minimization step: 2613. Total energy = 7520.7549 kcal/mol (7513.7238 without restraints) Performing minimization step: 2614. Total energy = 7518.1613 kcal/mol (7511.1315 without restraints) Performing minimization step: 2615. Total energy = 7515.5688 kcal/mol (7508.5402 without restraints) Performing minimization step: 2616. Total energy = 7512.9772 kcal/mol (7505.9499 without restraints) Performing minimization step: 2617. Total energy = 7510.3865 kcal/mol (7503.3604 without restraints) Performing minimization step: 2618. Total energy = 7507.7970 kcal/mol (7500.7721 without restraints) Performing minimization step: 2619. Total energy = 7505.2080 kcal/mol (7498.1843 without restraints) Performing minimization step: 2620. Total energy = 7502.6205 kcal/mol (7495.5981 without restraints) Performing minimization step: 2621. Total energy = 7500.0338 kcal/mol (7493.0127 without restraints) Performing minimization step: 2622. Total energy = 7497.4477 kcal/mol (7490.4279 without restraints) Performing minimization step: 2623. Total energy = 7494.8630 kcal/mol (7487.8444 without restraints) Performing minimization step: 2624. Total energy = 7492.2791 kcal/mol (7485.2617 without restraints) Performing minimization step: 2625. Total energy = 7489.6962 kcal/mol (7482.6801 without restraints) Performing minimization step: 2626. Total energy = 7487.1143 kcal/mol (7480.0994 without restraints) Performing minimization step: 2627. Total energy = 7484.5332 kcal/mol (7477.5196 without restraints) Performing minimization step: 2628. Total energy = 7481.9530 kcal/mol (7474.9406 without restraints) Performing minimization step: 2629. Total energy = 7479.3741 kcal/mol (7472.3630 without restraints) Performing minimization step: 2630. Total energy = 7476.7964 kcal/mol (7469.7864 without restraints) Performing minimization step: 2631. Total energy = 7474.2193 kcal/mol (7467.2106 without restraints) Performing minimization step: 2632. Total energy = 7471.6434 kcal/mol (7464.6360 without restraints) Performing minimization step: 2633. Total energy = 7469.0684 kcal/mol (7462.0622 without restraints) Performing minimization step: 2634. Total energy = 7466.4941 kcal/mol (7459.4892 without restraints) Performing minimization step: 2635. Total energy = 7463.9213 kcal/mol (7456.9178 without restraints) Performing minimization step: 2636. Total energy = 7461.3492 kcal/mol (7454.3467 without restraints) Performing minimization step: 2637. Total energy = 7458.7780 kcal/mol (7451.7768 without restraints) Performing minimization step: 2638. Total energy = 7456.2078 kcal/mol (7449.2078 without restraints) Performing minimization step: 2639. Total energy = 7453.6383 kcal/mol (7446.6395 without restraints) Performing minimization step: 2640. Total energy = 7451.0699 kcal/mol (7444.0723 without restraints) Performing minimization step: 2641. Total energy = 7448.5021 kcal/mol (7441.5059 without restraints) Performing minimization step: 2642. Total energy = 7445.9356 kcal/mol (7438.9406 without restraints) Performing minimization step: 2643. Total energy = 7443.3700 kcal/mol (7436.3762 without restraints) Performing minimization step: 2644. Total energy = 7440.8054 kcal/mol (7433.8128 without restraints) Performing minimization step: 2645. Total energy = 7438.2419 kcal/mol (7431.2506 without restraints) Performing minimization step: 2646. Total energy = 7435.6794 kcal/mol (7428.6893 without restraints) Performing minimization step: 2647. Total energy = 7433.1180 kcal/mol (7426.1291 without restraints) Performing minimization step: 2648. Total energy = 7430.5580 kcal/mol (7423.5704 without restraints) Performing minimization step: 2649. Total energy = 7427.9985 kcal/mol (7421.0122 without restraints) Performing minimization step: 2650. Total energy = 7425.4401 kcal/mol (7418.4550 without restraints) Performing minimization step: 2651. Total energy = 7422.8822 kcal/mol (7415.8983 without restraints) Performing minimization step: 2652. Total energy = 7420.3255 kcal/mol (7413.3428 without restraints) Performing minimization step: 2653. Total energy = 7417.7700 kcal/mol (7410.7886 without restraints) Performing minimization step: 2654. Total energy = 7415.2158 kcal/mol (7408.2356 without restraints) Performing minimization step: 2655. Total energy = 7412.6624 kcal/mol (7405.6834 without restraints) Performing minimization step: 2656. Total energy = 7410.1097 kcal/mol (7403.1320 without restraints) Performing minimization step: 2657. Total energy = 7407.5583 kcal/mol (7400.5819 without restraints) Performing minimization step: 2658. Total energy = 7405.0083 kcal/mol (7398.0331 without restraints) Performing minimization step: 2659. Total energy = 7402.4592 kcal/mol (7395.4852 without restraints) Performing minimization step: 2660. Total energy = 7399.9114 kcal/mol (7392.9388 without restraints) Performing minimization step: 2661. Total energy = 7397.3642 kcal/mol (7390.3927 without restraints) Performing minimization step: 2662. Total energy = 7394.8180 kcal/mol (7387.8477 without restraints) Performing minimization step: 2663. Total energy = 7392.2729 kcal/mol (7385.3039 without restraints) Performing minimization step: 2664. Total energy = 7389.7288 kcal/mol (7382.7610 without restraints) Performing minimization step: 2665. Total energy = 7387.1853 kcal/mol (7380.2186 without restraints) Performing minimization step: 2666. Total energy = 7384.6428 kcal/mol (7377.6775 without restraints) Performing minimization step: 2667. Total energy = 7382.1016 kcal/mol (7375.1375 without restraints) Performing minimization step: 2668. Total energy = 7379.5614 kcal/mol (7372.5986 without restraints) Performing minimization step: 2669. Total energy = 7377.0220 kcal/mol (7370.0604 without restraints) Performing minimization step: 2670. Total energy = 7374.4840 kcal/mol (7367.5237 without restraints) Performing minimization step: 2671. Total energy = 7371.9471 kcal/mol (7364.9880 without restraints) Performing minimization step: 2672. Total energy = 7369.4112 kcal/mol (7362.4533 without restraints) Performing minimization step: 2673. Total energy = 7366.8765 kcal/mol (7359.9198 without restraints) Performing minimization step: 2674. Total energy = 7364.3427 kcal/mol (7357.3874 without restraints) Performing minimization step: 2675. Total energy = 7361.8109 kcal/mol (7354.8566 without restraints) Performing minimization step: 2676. Total energy = 7359.2789 kcal/mol (7352.3259 without restraints) Performing minimization step: 2677. Total energy = 7356.7481 kcal/mol (7349.7963 without restraints) Performing minimization step: 2678. Total energy = 7354.2189 kcal/mol (7347.2685 without restraints) Performing minimization step: 2679. Total energy = 7351.6902 kcal/mol (7344.7408 without restraints) Performing minimization step: 2680. Total energy = 7349.1626 kcal/mol (7342.2145 without restraints) Performing minimization step: 2681. Total energy = 7346.6359 kcal/mol (7339.6892 without restraints) Performing minimization step: 2682. Total energy = 7344.1104 kcal/mol (7337.1649 without restraints) Performing minimization step: 2683. Total energy = 7341.5858 kcal/mol (7334.6414 without restraints) Performing minimization step: 2684. Total energy = 7339.0620 kcal/mol (7332.1188 without restraints) Performing minimization step: 2685. Total energy = 7336.5395 kcal/mol (7329.5976 without restraints) Performing minimization step: 2686. Total energy = 7334.0181 kcal/mol (7327.0775 without restraints) Performing minimization step: 2687. Total energy = 7331.4977 kcal/mol (7324.5582 without restraints) Performing minimization step: 2688. Total energy = 7328.9782 kcal/mol (7322.0400 without restraints) Performing minimization step: 2689. Total energy = 7326.4599 kcal/mol (7319.5229 without restraints) Performing minimization step: 2690. Total energy = 7323.9421 kcal/mol (7317.0062 without restraints) Performing minimization step: 2691. Total energy = 7321.4258 kcal/mol (7314.4912 without restraints) Performing minimization step: 2692. Total energy = 7318.9106 kcal/mol (7311.9773 without restraints) Performing minimization step: 2693. Total energy = 7316.3965 kcal/mol (7309.4644 without restraints) Performing minimization step: 2694. Total energy = 7313.8834 kcal/mol (7306.9526 without restraints) Performing minimization step: 2695. Total energy = 7311.3714 kcal/mol (7304.4418 without restraints) Performing minimization step: 2696. Total energy = 7308.8602 kcal/mol (7301.9319 without restraints) Performing minimization step: 2697. Total energy = 7306.3504 kcal/mol (7299.4233 without restraints) Performing minimization step: 2698. Total energy = 7303.8415 kcal/mol (7296.9155 without restraints) Performing minimization step: 2699. Total energy = 7301.3337 kcal/mol (7294.4090 without restraints) Performing minimization step: 2700. Total energy = 7298.8270 kcal/mol (7291.9035 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 7296.3214 kcal/mol (7289.3992 without restraints) Performing minimization step: 2702. Total energy = 7293.8175 kcal/mol (7286.8966 without restraints) Performing minimization step: 2703. Total energy = 7291.3147 kcal/mol (7284.3950 without restraints) Performing minimization step: 2704. Total energy = 7288.8124 kcal/mol (7281.8938 without restraints) Performing minimization step: 2705. Total energy = 7286.3113 kcal/mol (7279.3940 without restraints) Performing minimization step: 2706. Total energy = 7283.8111 kcal/mol (7276.8950 without restraints) Performing minimization step: 2707. Total energy = 7281.3122 kcal/mol (7274.3973 without restraints) Performing minimization step: 2708. Total energy = 7278.8144 kcal/mol (7271.9007 without restraints) Performing minimization step: 2709. Total energy = 7276.3171 kcal/mol (7269.4046 without restraints) Performing minimization step: 2710. Total energy = 7273.8208 kcal/mol (7266.9096 without restraints) Performing minimization step: 2711. Total energy = 7271.3257 kcal/mol (7264.4159 without restraints) Performing minimization step: 2712. Total energy = 7268.8324 kcal/mol (7261.9237 without restraints) Performing minimization step: 2713. Total energy = 7266.3396 kcal/mol (7259.4321 without restraints) Performing minimization step: 2714. Total energy = 7263.8484 kcal/mol (7256.9421 without restraints) Performing minimization step: 2715. Total energy = 7261.3580 kcal/mol (7254.4530 without restraints) Performing minimization step: 2716. Total energy = 7258.8687 kcal/mol (7251.9648 without restraints) Performing minimization step: 2717. Total energy = 7256.3804 kcal/mol (7249.4778 without restraints) Performing minimization step: 2718. Total energy = 7253.8934 kcal/mol (7246.9920 without restraints) Performing minimization step: 2719. Total energy = 7251.4076 kcal/mol (7244.5075 without restraints) Performing minimization step: 2720. Total energy = 7248.9227 kcal/mol (7242.0238 without restraints) Performing minimization step: 2721. Total energy = 7246.4386 kcal/mol (7239.5409 without restraints) Performing minimization step: 2722. Total energy = 7243.9559 kcal/mol (7237.0594 without restraints) Performing minimization step: 2723. Total energy = 7241.4744 kcal/mol (7234.5792 without restraints) Performing minimization step: 2724. Total energy = 7238.9936 kcal/mol (7232.0995 without restraints) Performing minimization step: 2725. Total energy = 7236.5141 kcal/mol (7229.6213 without restraints) Performing minimization step: 2726. Total energy = 7234.0358 kcal/mol (7227.1442 without restraints) Performing minimization step: 2727. Total energy = 7231.5586 kcal/mol (7224.6683 without restraints) Performing minimization step: 2728. Total energy = 7229.0825 kcal/mol (7222.1933 without restraints) Performing minimization step: 2729. Total energy = 7226.6077 kcal/mol (7219.7198 without restraints) Performing minimization step: 2730. Total energy = 7224.1336 kcal/mol (7217.2469 without restraints) Performing minimization step: 2731. Total energy = 7221.6613 kcal/mol (7214.7759 without restraints) Performing minimization step: 2732. Total energy = 7219.1901 kcal/mol (7212.3059 without restraints) Performing minimization step: 2733. Total energy = 7216.7198 kcal/mol (7209.8368 without restraints) Performing minimization step: 2734. Total energy = 7214.2506 kcal/mol (7207.3688 without restraints) Performing minimization step: 2735. Total energy = 7211.7818 kcal/mol (7204.9012 without restraints) Performing minimization step: 2736. Total energy = 7209.3147 kcal/mol (7202.4354 without restraints) Performing minimization step: 2737. Total energy = 7206.8491 kcal/mol (7199.9710 without restraints) Performing minimization step: 2738. Total energy = 7204.3843 kcal/mol (7197.5074 without restraints) Performing minimization step: 2739. Total energy = 7201.9205 kcal/mol (7195.0448 without restraints) Performing minimization step: 2740. Total energy = 7199.4577 kcal/mol (7192.5833 without restraints) Performing minimization step: 2741. Total energy = 7196.9963 kcal/mol (7190.1230 without restraints) Performing minimization step: 2742. Total energy = 7194.5360 kcal/mol (7187.6641 without restraints) Performing minimization step: 2743. Total energy = 7192.0766 kcal/mol (7185.2060 without restraints) Performing minimization step: 2744. Total energy = 7189.6186 kcal/mol (7182.7490 without restraints) Performing minimization step: 2745. Total energy = 7187.1613 kcal/mol (7180.2931 without restraints) Performing minimization step: 2746. Total energy = 7184.7054 kcal/mol (7177.8383 without restraints) Performing minimization step: 2747. Total energy = 7182.2506 kcal/mol (7175.3847 without restraints) Performing minimization step: 2748. Total energy = 7179.7968 kcal/mol (7172.9322 without restraints) Performing minimization step: 2749. Total energy = 7177.3451 kcal/mol (7170.4816 without restraints) Performing minimization step: 2750. Total energy = 7174.8940 kcal/mol (7168.0316 without restraints) Performing minimization step: 2751. Total energy = 7172.4436 kcal/mol (7165.5826 without restraints) Performing minimization step: 2752. Total energy = 7169.9939 kcal/mol (7163.1342 without restraints) Performing minimization step: 2753. Total energy = 7167.5464 kcal/mol (7160.6879 without restraints) Performing minimization step: 2754. Total energy = 7165.0995 kcal/mol (7158.2422 without restraints) Performing minimization step: 2755. Total energy = 7162.6540 kcal/mol (7155.7979 without restraints) Performing minimization step: 2756. Total energy = 7160.2095 kcal/mol (7153.3546 without restraints) Performing minimization step: 2757. Total energy = 7157.7661 kcal/mol (7150.9124 without restraints) Performing minimization step: 2758. Total energy = 7155.3238 kcal/mol (7148.4713 without restraints) Performing minimization step: 2759. Total energy = 7152.8828 kcal/mol (7146.0316 without restraints) Performing minimization step: 2760. Total energy = 7150.4431 kcal/mol (7143.5932 without restraints) Performing minimization step: 2761. Total energy = 7148.0042 kcal/mol (7141.1554 without restraints) Performing minimization step: 2762. Total energy = 7145.5669 kcal/mol (7138.7193 without restraints) Performing minimization step: 2763. Total energy = 7143.1303 kcal/mol (7136.2840 without restraints) Performing minimization step: 2764. Total energy = 7140.6951 kcal/mol (7133.8500 without restraints) Performing minimization step: 2765. Total energy = 7138.2609 kcal/mol (7131.4170 without restraints) Performing minimization step: 2766. Total energy = 7135.8279 kcal/mol (7128.9852 without restraints) Performing minimization step: 2767. Total energy = 7133.3962 kcal/mol (7126.5547 without restraints) Performing minimization step: 2768. Total energy = 7130.9657 kcal/mol (7124.1256 without restraints) Performing minimization step: 2769. Total energy = 7128.5364 kcal/mol (7121.6974 without restraints) Performing minimization step: 2770. Total energy = 7126.1084 kcal/mol (7119.2707 without restraints) Performing minimization step: 2771. Total energy = 7123.6813 kcal/mol (7116.8447 without restraints) Performing minimization step: 2772. Total energy = 7121.2553 kcal/mol (7114.4198 without restraints) Performing minimization step: 2773. Total energy = 7118.8302 kcal/mol (7111.9960 without restraints) Performing minimization step: 2774. Total energy = 7116.4066 kcal/mol (7109.5737 without restraints) Performing minimization step: 2775. Total energy = 7113.9838 kcal/mol (7107.1521 without restraints) Performing minimization step: 2776. Total energy = 7111.5624 kcal/mol (7104.7319 without restraints) Performing minimization step: 2777. Total energy = 7109.1422 kcal/mol (7102.3129 without restraints) Performing minimization step: 2778. Total energy = 7106.7234 kcal/mol (7099.8954 without restraints) Performing minimization step: 2779. Total energy = 7104.3055 kcal/mol (7097.4784 without restraints) Performing minimization step: 2780. Total energy = 7101.8884 kcal/mol (7095.0628 without restraints) Performing minimization step: 2781. Total energy = 7099.4731 kcal/mol (7092.6487 without restraints) Performing minimization step: 2782. Total energy = 7097.0585 kcal/mol (7090.2354 without restraints) Performing minimization step: 2783. Total energy = 7094.6458 kcal/mol (7087.8238 without restraints) Performing minimization step: 2784. Total energy = 7092.2338 kcal/mol (7085.4130 without restraints) Performing minimization step: 2785. Total energy = 7089.8229 kcal/mol (7083.0033 without restraints) Performing minimization step: 2786. Total energy = 7087.4132 kcal/mol (7080.5949 without restraints) Performing minimization step: 2787. Total energy = 7085.0050 kcal/mol (7078.1879 without restraints) Performing minimization step: 2788. Total energy = 7082.5977 kcal/mol (7075.7818 without restraints) Performing minimization step: 2789. Total energy = 7080.1921 kcal/mol (7073.3774 without restraints) Performing minimization step: 2790. Total energy = 7077.7872 kcal/mol (7070.9738 without restraints) Performing minimization step: 2791. Total energy = 7075.3835 kcal/mol (7068.5712 without restraints) Performing minimization step: 2792. Total energy = 7072.9809 kcal/mol (7066.1699 without restraints) Performing minimization step: 2793. Total energy = 7070.5796 kcal/mol (7063.7697 without restraints) Performing minimization step: 2794. Total energy = 7068.1796 kcal/mol (7061.3711 without restraints) Performing minimization step: 2795. Total energy = 7065.7805 kcal/mol (7058.9732 without restraints) Performing minimization step: 2796. Total energy = 7063.3828 kcal/mol (7056.5766 without restraints) Performing minimization step: 2797. Total energy = 7060.9862 kcal/mol (7054.1813 without restraints) Performing minimization step: 2798. Total energy = 7058.5908 kcal/mol (7051.7871 without restraints) Performing minimization step: 2799. Total energy = 7056.1967 kcal/mol (7049.3942 without restraints) Performing minimization step: 2800. Total energy = 7053.8040 kcal/mol (7047.0027 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 7051.4123 kcal/mol (7044.6123 without restraints) Performing minimization step: 2802. Total energy = 7049.0218 kcal/mol (7042.2230 without restraints) Performing minimization step: 2803. Total energy = 7046.6326 kcal/mol (7039.8350 without restraints) Performing minimization step: 2804. Total energy = 7044.2448 kcal/mol (7037.4485 without restraints) Performing minimization step: 2805. Total energy = 7041.8580 kcal/mol (7035.0628 without restraints) Performing minimization step: 2806. Total energy = 7039.4725 kcal/mol (7032.6785 without restraints) Performing minimization step: 2807. Total energy = 7037.0878 kcal/mol (7030.2951 without restraints) Performing minimization step: 2808. Total energy = 7034.7046 kcal/mol (7027.9131 without restraints) Performing minimization step: 2809. Total energy = 7032.3230 kcal/mol (7025.5327 without restraints) Performing minimization step: 2810. Total energy = 7029.9420 kcal/mol (7023.1529 without restraints) Performing minimization step: 2811. Total energy = 7027.5624 kcal/mol (7020.7745 without restraints) Performing minimization step: 2812. Total energy = 7025.1842 kcal/mol (7018.3975 without restraints) Performing minimization step: 2813. Total energy = 7022.8069 kcal/mol (7016.0214 without restraints) Performing minimization step: 2814. Total energy = 7020.4313 kcal/mol (7013.6471 without restraints) Performing minimization step: 2815. Total energy = 7018.0567 kcal/mol (7011.2739 without restraints) Performing minimization step: 2816. Total energy = 7015.6837 kcal/mol (7008.9019 without restraints) Performing minimization step: 2817. Total energy = 7013.3113 kcal/mol (7006.5308 without restraints) Performing minimization step: 2818. Total energy = 7010.9403 kcal/mol (7004.1609 without restraints) Performing minimization step: 2819. Total energy = 7008.5706 kcal/mol (7001.7925 without restraints) Performing minimization step: 2820. Total energy = 7006.2024 kcal/mol (6999.4255 without restraints) Performing minimization step: 2821. Total energy = 7003.8350 kcal/mol (6997.0593 without restraints) Performing minimization step: 2822. Total energy = 7001.4693 kcal/mol (6994.6948 without restraints) Performing minimization step: 2823. Total energy = 6999.1044 kcal/mol (6992.3311 without restraints) Performing minimization step: 2824. Total energy = 6996.7408 kcal/mol (6989.9687 without restraints) Performing minimization step: 2825. Total energy = 6994.3783 kcal/mol (6987.6074 without restraints) Performing minimization step: 2826. Total energy = 6992.0169 kcal/mol (6985.2471 without restraints) Performing minimization step: 2827. Total energy = 6989.6567 kcal/mol (6982.8883 without restraints) Performing minimization step: 2828. Total energy = 6987.2981 kcal/mol (6980.5309 without restraints) Performing minimization step: 2829. Total energy = 6984.9410 kcal/mol (6978.1750 without restraints) Performing minimization step: 2830. Total energy = 6982.5849 kcal/mol (6975.8204 without restraints) Performing minimization step: 2831. Total energy = 6980.2301 kcal/mol (6973.4665 without restraints) Performing minimization step: 2832. Total energy = 6977.8763 kcal/mol (6971.1141 without restraints) Performing minimization step: 2833. Total energy = 6975.5239 kcal/mol (6968.7627 without restraints) Performing minimization step: 2834. Total energy = 6973.1726 kcal/mol (6966.4127 without restraints) Performing minimization step: 2835. Total energy = 6970.8225 kcal/mol (6964.0638 without restraints) Performing minimization step: 2836. Total energy = 6968.4737 kcal/mol (6961.7163 without restraints) Performing minimization step: 2837. Total energy = 6966.1262 kcal/mol (6959.3699 without restraints) Performing minimization step: 2838. Total energy = 6963.7801 kcal/mol (6957.0250 without restraints) Performing minimization step: 2839. Total energy = 6961.4350 kcal/mol (6954.6811 without restraints) Performing minimization step: 2840. Total energy = 6959.0912 kcal/mol (6952.3385 without restraints) Performing minimization step: 2841. Total energy = 6956.7487 kcal/mol (6949.9971 without restraints) Performing minimization step: 2842. Total energy = 6954.4070 kcal/mol (6947.6568 without restraints) Performing minimization step: 2843. Total energy = 6952.0670 kcal/mol (6945.3180 without restraints) Performing minimization step: 2844. Total energy = 6949.7280 kcal/mol (6942.9802 without restraints) Performing minimization step: 2845. Total energy = 6947.3907 kcal/mol (6940.6441 without restraints) Performing minimization step: 2846. Total energy = 6945.0546 kcal/mol (6938.3093 without restraints) Performing minimization step: 2847. Total energy = 6942.7199 kcal/mol (6935.9757 without restraints) Performing minimization step: 2848. Total energy = 6940.3861 kcal/mol (6933.6432 without restraints) Performing minimization step: 2849. Total energy = 6938.0541 kcal/mol (6931.3124 without restraints) Performing minimization step: 2850. Total energy = 6935.7229 kcal/mol (6928.9824 without restraints) Performing minimization step: 2851. Total energy = 6933.3929 kcal/mol (6926.6537 without restraints) Performing minimization step: 2852. Total energy = 6931.0650 kcal/mol (6924.3269 without restraints) Performing minimization step: 2853. Total energy = 6928.7374 kcal/mol (6922.0005 without restraints) Performing minimization step: 2854. Total energy = 6926.4116 kcal/mol (6919.6759 without restraints) Performing minimization step: 2855. Total energy = 6924.0869 kcal/mol (6917.3524 without restraints) Performing minimization step: 2856. Total energy = 6921.7639 kcal/mol (6915.0307 without restraints) Performing minimization step: 2857. Total energy = 6919.4419 kcal/mol (6912.7100 without restraints) Performing minimization step: 2858. Total energy = 6917.1213 kcal/mol (6910.3906 without restraints) Performing minimization step: 2859. Total energy = 6914.8015 kcal/mol (6908.0719 without restraints) Performing minimization step: 2860. Total energy = 6912.4833 kcal/mol (6905.7549 without restraints) Performing minimization step: 2861. Total energy = 6910.1661 kcal/mol (6903.4389 without restraints) Performing minimization step: 2862. Total energy = 6907.8498 kcal/mol (6901.1239 without restraints) Performing minimization step: 2863. Total energy = 6905.5352 kcal/mol (6898.8104 without restraints) Performing minimization step: 2864. Total energy = 6903.2218 kcal/mol (6896.4984 without restraints) Performing minimization step: 2865. Total energy = 6900.9097 kcal/mol (6894.1875 without restraints) Performing minimization step: 2866. Total energy = 6898.5987 kcal/mol (6891.8777 without restraints) Performing minimization step: 2867. Total energy = 6896.2892 kcal/mol (6889.5694 without restraints) Performing minimization step: 2868. Total energy = 6893.9813 kcal/mol (6887.2628 without restraints) Performing minimization step: 2869. Total energy = 6891.6746 kcal/mol (6884.9572 without restraints) Performing minimization step: 2870. Total energy = 6889.3691 kcal/mol (6882.6530 without restraints) Performing minimization step: 2871. Total energy = 6887.0651 kcal/mol (6880.3502 without restraints) Performing minimization step: 2872. Total energy = 6884.7621 kcal/mol (6878.0484 without restraints) Performing minimization step: 2873. Total energy = 6882.4609 kcal/mol (6875.7484 without restraints) Performing minimization step: 2874. Total energy = 6880.1606 kcal/mol (6873.4494 without restraints) Performing minimization step: 2875. Total energy = 6877.8620 kcal/mol (6871.1519 without restraints) Performing minimization step: 2876. Total energy = 6875.5642 kcal/mol (6868.8554 without restraints) Performing minimization step: 2877. Total energy = 6873.2680 kcal/mol (6866.5603 without restraints) Performing minimization step: 2878. Total energy = 6870.9729 kcal/mol (6864.2666 without restraints) Performing minimization step: 2879. Total energy = 6868.6796 kcal/mol (6861.9744 without restraints) Performing minimization step: 2880. Total energy = 6866.3871 kcal/mol (6859.6831 without restraints) Performing minimization step: 2881. Total energy = 6864.0957 kcal/mol (6857.3930 without restraints) Performing minimization step: 2882. Total energy = 6861.8062 kcal/mol (6855.1047 without restraints) Performing minimization step: 2883. Total energy = 6859.5176 kcal/mol (6852.8173 without restraints) Performing minimization step: 2884. Total energy = 6857.2302 kcal/mol (6850.5311 without restraints) Performing minimization step: 2885. Total energy = 6854.9445 kcal/mol (6848.2466 without restraints) Performing minimization step: 2886. Total energy = 6852.6599 kcal/mol (6845.9632 without restraints) Performing minimization step: 2887. Total energy = 6850.3766 kcal/mol (6843.6811 without restraints) Performing minimization step: 2888. Total energy = 6848.0944 kcal/mol (6841.4001 without restraints) Performing minimization step: 2889. Total energy = 6845.8137 kcal/mol (6839.1207 without restraints) Performing minimization step: 2890. Total energy = 6843.5344 kcal/mol (6836.8426 without restraints) Performing minimization step: 2891. Total energy = 6841.2567 kcal/mol (6834.5663 without restraints) Performing minimization step: 2892. Total energy = 6838.9800 kcal/mol (6832.2905 without restraints) Performing minimization step: 2893. Total energy = 6836.7043 kcal/mol (6830.0160 without restraints) Performing minimization step: 2894. Total energy = 6834.4303 kcal/mol (6827.7433 without restraints) Performing minimization step: 2895. Total energy = 6832.1576 kcal/mol (6825.4718 without restraints) Performing minimization step: 2896. Total energy = 6829.8864 kcal/mol (6823.2019 without restraints) Performing minimization step: 2897. Total energy = 6827.6166 kcal/mol (6820.9333 without restraints) Performing minimization step: 2898. Total energy = 6825.3481 kcal/mol (6818.6660 without restraints) Performing minimization step: 2899. Total energy = 6823.0812 kcal/mol (6816.4003 without restraints) Performing minimization step: 2900. Total energy = 6820.8151 kcal/mol (6814.1354 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 6818.5505 kcal/mol (6811.8720 without restraints) Performing minimization step: 2902. Total energy = 6816.2874 kcal/mol (6809.6102 without restraints) Performing minimization step: 2903. Total energy = 6814.0255 kcal/mol (6807.3495 without restraints) Performing minimization step: 2904. Total energy = 6811.7649 kcal/mol (6805.0901 without restraints) Performing minimization step: 2905. Total energy = 6809.5061 kcal/mol (6802.8325 without restraints) Performing minimization step: 2906. Total energy = 6807.2482 kcal/mol (6800.5758 without restraints) Performing minimization step: 2907. Total energy = 6804.9916 kcal/mol (6798.3205 without restraints) Performing minimization step: 2908. Total energy = 6802.7363 kcal/mol (6796.0663 without restraints) Performing minimization step: 2909. Total energy = 6800.4822 kcal/mol (6793.8135 without restraints) Performing minimization step: 2910. Total energy = 6798.2300 kcal/mol (6791.5626 without restraints) Performing minimization step: 2911. Total energy = 6795.9791 kcal/mol (6789.3129 without restraints) Performing minimization step: 2912. Total energy = 6793.7298 kcal/mol (6787.0647 without restraints) Performing minimization step: 2913. Total energy = 6791.4815 kcal/mol (6784.8177 without restraints) Performing minimization step: 2914. Total energy = 6789.2347 kcal/mol (6782.5721 without restraints) Performing minimization step: 2915. Total energy = 6786.9891 kcal/mol (6780.3277 without restraints) Performing minimization step: 2916. Total energy = 6784.7449 kcal/mol (6778.0847 without restraints) Performing minimization step: 2917. Total energy = 6782.5015 kcal/mol (6775.8426 without restraints) Performing minimization step: 2918. Total energy = 6780.2600 kcal/mol (6773.6023 without restraints) Performing minimization step: 2919. Total energy = 6778.0196 kcal/mol (6771.3631 without restraints) Performing minimization step: 2920. Total energy = 6775.7807 kcal/mol (6769.1253 without restraints) Performing minimization step: 2921. Total energy = 6773.5432 kcal/mol (6766.8890 without restraints) Performing minimization step: 2922. Total energy = 6771.3075 kcal/mol (6764.6546 without restraints) Performing minimization step: 2923. Total energy = 6769.0734 kcal/mol (6762.4218 without restraints) Performing minimization step: 2924. Total energy = 6766.8404 kcal/mol (6760.1899 without restraints) Performing minimization step: 2925. Total energy = 6764.6088 kcal/mol (6757.9596 without restraints) Performing minimization step: 2926. Total energy = 6762.3785 kcal/mol (6755.7305 without restraints) Performing minimization step: 2927. Total energy = 6760.1497 kcal/mol (6753.5029 without restraints) Performing minimization step: 2928. Total energy = 6757.9219 kcal/mol (6751.2764 without restraints) Performing minimization step: 2929. Total energy = 6755.6954 kcal/mol (6749.0510 without restraints) Performing minimization step: 2930. Total energy = 6753.4705 kcal/mol (6746.8274 without restraints) Performing minimization step: 2931. Total energy = 6751.2472 kcal/mol (6744.6053 without restraints) Performing minimization step: 2932. Total energy = 6749.0253 kcal/mol (6742.3846 without restraints) Performing minimization step: 2933. Total energy = 6746.8050 kcal/mol (6740.1655 without restraints) Performing minimization step: 2934. Total energy = 6744.5856 kcal/mol (6737.9474 without restraints) Performing minimization step: 2935. Total energy = 6742.3677 kcal/mol (6735.7307 without restraints) Performing minimization step: 2936. Total energy = 6740.1512 kcal/mol (6733.5154 without restraints) Performing minimization step: 2937. Total energy = 6737.9359 kcal/mol (6731.3012 without restraints) Performing minimization step: 2938. Total energy = 6735.7223 kcal/mol (6729.0891 without restraints) Performing minimization step: 2939. Total energy = 6733.5102 kcal/mol (6726.8781 without restraints) Performing minimization step: 2940. Total energy = 6731.2993 kcal/mol (6724.6684 without restraints) Performing minimization step: 2941. Total energy = 6729.0900 kcal/mol (6722.4602 without restraints) Performing minimization step: 2942. Total energy = 6726.8821 kcal/mol (6720.2536 without restraints) Performing minimization step: 2943. Total energy = 6724.6755 kcal/mol (6718.0483 without restraints) Performing minimization step: 2944. Total energy = 6722.4701 kcal/mol (6715.8439 without restraints) Performing minimization step: 2945. Total energy = 6720.2662 kcal/mol (6713.6416 without restraints) Performing minimization step: 2946. Total energy = 6718.0637 kcal/mol (6711.4402 without restraints) Performing minimization step: 2947. Total energy = 6715.8628 kcal/mol (6709.2405 without restraints) Performing minimization step: 2948. Total energy = 6713.6633 kcal/mol (6707.0422 without restraints) Performing minimization step: 2949. Total energy = 6711.4652 kcal/mol (6704.8453 without restraints) Performing minimization step: 2950. Total energy = 6709.2682 kcal/mol (6702.6496 without restraints) Performing minimization step: 2951. Total energy = 6707.0731 kcal/mol (6700.4556 without restraints) Performing minimization step: 2952. Total energy = 6704.8793 kcal/mol (6698.2631 without restraints) Performing minimization step: 2953. Total energy = 6702.6867 kcal/mol (6696.0717 without restraints) Performing minimization step: 2954. Total energy = 6700.4958 kcal/mol (6693.8820 without restraints) Performing minimization step: 2955. Total energy = 6698.3065 kcal/mol (6691.6940 without restraints) Performing minimization step: 2956. Total energy = 6696.1184 kcal/mol (6689.5071 without restraints) Performing minimization step: 2957. Total energy = 6693.9323 kcal/mol (6687.3221 without restraints) Performing minimization step: 2958. Total energy = 6691.7470 kcal/mol (6685.1381 without restraints) Performing minimization step: 2959. Total energy = 6689.5636 kcal/mol (6682.9559 without restraints) Performing minimization step: 2960. Total energy = 6687.3815 kcal/mol (6680.7751 without restraints) Performing minimization step: 2961. Total energy = 6685.2007 kcal/mol (6678.5955 without restraints) Performing minimization step: 2962. Total energy = 6683.0218 kcal/mol (6676.4178 without restraints) Performing minimization step: 2963. Total energy = 6680.8439 kcal/mol (6674.2412 without restraints) Performing minimization step: 2964. Total energy = 6678.6677 kcal/mol (6672.0662 without restraints) Performing minimization step: 2965. Total energy = 6676.4934 kcal/mol (6669.8931 without restraints) Performing minimization step: 2966. Total energy = 6674.3199 kcal/mol (6667.7208 without restraints) Performing minimization step: 2967. Total energy = 6672.1484 kcal/mol (6665.5507 without restraints) Performing minimization step: 2968. Total energy = 6669.9779 kcal/mol (6663.3813 without restraints) Performing minimization step: 2969. Total energy = 6667.8089 kcal/mol (6661.2136 without restraints) Performing minimization step: 2970. Total energy = 6665.6417 kcal/mol (6659.0476 without restraints) Performing minimization step: 2971. Total energy = 6663.4757 kcal/mol (6656.8828 without restraints) Performing minimization step: 2972. Total energy = 6661.3110 kcal/mol (6654.7193 without restraints) Performing minimization step: 2973. Total energy = 6659.1480 kcal/mol (6652.5576 without restraints) Performing minimization step: 2974. Total energy = 6656.9864 kcal/mol (6650.3973 without restraints) Performing minimization step: 2975. Total energy = 6654.8263 kcal/mol (6648.2383 without restraints) Performing minimization step: 2976. Total energy = 6652.6679 kcal/mol (6646.0811 without restraints) Performing minimization step: 2977. Total energy = 6650.5107 kcal/mol (6643.9252 without restraints) Performing minimization step: 2978. Total energy = 6648.3548 kcal/mol (6641.7704 without restraints) Performing minimization step: 2979. Total energy = 6646.2003 kcal/mol (6639.6172 without restraints) Performing minimization step: 2980. Total energy = 6644.0477 kcal/mol (6637.4660 without restraints) Performing minimization step: 2981. Total energy = 6641.8963 kcal/mol (6635.3158 without restraints) Performing minimization step: 2982. Total energy = 6639.7467 kcal/mol (6633.1673 without restraints) Performing minimization step: 2983. Total energy = 6637.5983 kcal/mol (6631.0202 without restraints) Performing minimization step: 2984. Total energy = 6635.4518 kcal/mol (6628.8748 without restraints) Performing minimization step: 2985. Total energy = 6633.3059 kcal/mol (6626.7300 without restraints) Performing minimization step: 2986. Total energy = 6631.1618 kcal/mol (6624.5873 without restraints) Performing minimization step: 2987. Total energy = 6629.0192 kcal/mol (6622.4460 without restraints) Performing minimization step: 2988. Total energy = 6626.8783 kcal/mol (6620.3063 without restraints) Performing minimization step: 2989. Total energy = 6624.7388 kcal/mol (6618.1681 without restraints) Performing minimization step: 2990. Total energy = 6622.6010 kcal/mol (6616.0314 without restraints) Performing minimization step: 2991. Total energy = 6620.4649 kcal/mol (6613.8966 without restraints) Performing minimization step: 2992. Total energy = 6618.3302 kcal/mol (6611.7631 without restraints) Performing minimization step: 2993. Total energy = 6616.1971 kcal/mol (6609.6316 without restraints) Performing minimization step: 2994. Total energy = 6614.0660 kcal/mol (6607.5016 without restraints) Performing minimization step: 2995. Total energy = 6611.9359 kcal/mol (6605.3725 without restraints) Performing minimization step: 2996. Total energy = 6609.8072 kcal/mol (6603.2451 without restraints) Performing minimization step: 2997. Total energy = 6607.6797 kcal/mol (6601.1188 without restraints) Performing minimization step: 2998. Total energy = 6605.5537 kcal/mol (6598.9940 without restraints) Performing minimization step: 2999. Total energy = 6603.4294 kcal/mol (6596.8708 without restraints) Performing minimization step: 3000. Total energy = 6601.3065 kcal/mol (6594.7493 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 6599.1854 kcal/mol (6592.6294 without restraints) Performing minimization step: 3002. Total energy = 6597.0658 kcal/mol (6590.5111 without restraints) Performing minimization step: 3003. Total energy = 6594.9478 kcal/mol (6588.3944 without restraints) Performing minimization step: 3004. Total energy = 6592.8318 kcal/mol (6586.2795 without restraints) Performing minimization step: 3005. Total energy = 6590.7169 kcal/mol (6584.1660 without restraints) Performing minimization step: 3006. Total energy = 6588.6034 kcal/mol (6582.0536 without restraints) Performing minimization step: 3007. Total energy = 6586.4917 kcal/mol (6579.9433 without restraints) Performing minimization step: 3008. Total energy = 6584.3816 kcal/mol (6577.8342 without restraints) Performing minimization step: 3009. Total energy = 6582.2726 kcal/mol (6575.7265 without restraints) Performing minimization step: 3010. Total energy = 6580.1655 kcal/mol (6573.6207 without restraints) Performing minimization step: 3011. Total energy = 6578.0597 kcal/mol (6571.5161 without restraints) Performing minimization step: 3012. Total energy = 6575.9557 kcal/mol (6569.4133 without restraints) Performing minimization step: 3013. Total energy = 6573.8531 kcal/mol (6567.3119 without restraints) Performing minimization step: 3014. Total energy = 6571.7521 kcal/mol (6565.2122 without restraints) Performing minimization step: 3015. Total energy = 6569.6525 kcal/mol (6563.1139 without restraints) Performing minimization step: 3016. Total energy = 6567.5544 kcal/mol (6561.0169 without restraints) Performing minimization step: 3017. Total energy = 6565.4577 kcal/mol (6558.9216 without restraints) Performing minimization step: 3018. Total energy = 6563.3629 kcal/mol (6556.8279 without restraints) Performing minimization step: 3019. Total energy = 6561.2695 kcal/mol (6554.7357 without restraints) Performing minimization step: 3020. Total energy = 6559.1783 kcal/mol (6552.6460 without restraints) Performing minimization step: 3021. Total energy = 6557.0885 kcal/mol (6550.5574 without restraints) Performing minimization step: 3022. Total energy = 6555.0000 kcal/mol (6548.4700 without restraints) Performing minimization step: 3023. Total energy = 6552.9129 kcal/mol (6546.3841 without restraints) Performing minimization step: 3024. Total energy = 6550.8274 kcal/mol (6544.3000 without restraints) Performing minimization step: 3025. Total energy = 6548.7438 kcal/mol (6542.2175 without restraints) Performing minimization step: 3026. Total energy = 6546.6617 kcal/mol (6540.1367 without restraints) Performing minimization step: 3027. Total energy = 6544.5809 kcal/mol (6538.0571 without restraints) Performing minimization step: 3028. Total energy = 6542.5015 kcal/mol (6535.9790 without restraints) Performing minimization step: 3029. Total energy = 6540.4247 kcal/mol (6533.9034 without restraints) Performing minimization step: 3030. Total energy = 6538.3488 kcal/mol (6531.8288 without restraints) Performing minimization step: 3031. Total energy = 6536.2746 kcal/mol (6529.7558 without restraints) Performing minimization step: 3032. Total energy = 6534.2019 kcal/mol (6527.6844 without restraints) Performing minimization step: 3033. Total energy = 6532.1306 kcal/mol (6525.6143 without restraints) Performing minimization step: 3034. Total energy = 6530.0609 kcal/mol (6523.5459 without restraints) Performing minimization step: 3035. Total energy = 6527.9930 kcal/mol (6521.4792 without restraints) Performing minimization step: 3036. Total energy = 6525.9268 kcal/mol (6519.4143 without restraints) Performing minimization step: 3037. Total energy = 6523.8622 kcal/mol (6517.3509 without restraints) Performing minimization step: 3038. Total energy = 6521.7989 kcal/mol (6515.2888 without restraints) Performing minimization step: 3039. Total energy = 6519.7375 kcal/mol (6513.2288 without restraints) Performing minimization step: 3040. Total energy = 6517.6776 kcal/mol (6511.1702 without restraints) Performing minimization step: 3041. Total energy = 6515.6193 kcal/mol (6509.1130 without restraints) Performing minimization step: 3042. Total energy = 6513.5628 kcal/mol (6507.0577 without restraints) Performing minimization step: 3043. Total energy = 6511.5075 kcal/mol (6505.0037 without restraints) Performing minimization step: 3044. Total energy = 6509.4542 kcal/mol (6502.9517 without restraints) Performing minimization step: 3045. Total energy = 6507.4023 kcal/mol (6500.9010 without restraints) Performing minimization step: 3046. Total energy = 6505.3519 kcal/mol (6498.8518 without restraints) Performing minimization step: 3047. Total energy = 6503.3030 kcal/mol (6496.8041 without restraints) Performing minimization step: 3048. Total energy = 6501.2557 kcal/mol (6494.7581 without restraints) Performing minimization step: 3049. Total energy = 6499.2101 kcal/mol (6492.7138 without restraints) Performing minimization step: 3050. Total energy = 6497.1663 kcal/mol (6490.6712 without restraints) Performing minimization step: 3051. Total energy = 6495.1242 kcal/mol (6488.6303 without restraints) Performing minimization step: 3052. Total energy = 6493.0836 kcal/mol (6486.5911 without restraints) Performing minimization step: 3053. Total energy = 6491.0446 kcal/mol (6484.5532 without restraints) Performing minimization step: 3054. Total energy = 6489.0075 kcal/mol (6482.5176 without restraints) Performing minimization step: 3055. Total energy = 6486.9718 kcal/mol (6480.4830 without restraints) Performing minimization step: 3056. Total energy = 6484.9377 kcal/mol (6478.4501 without restraints) Performing minimization step: 3057. Total energy = 6482.9052 kcal/mol (6476.4189 without restraints) Performing minimization step: 3058. Total energy = 6480.8747 kcal/mol (6474.3897 without restraints) Performing minimization step: 3059. Total energy = 6478.8454 kcal/mol (6472.3616 without restraints) Performing minimization step: 3060. Total energy = 6476.8179 kcal/mol (6470.3354 without restraints) Performing minimization step: 3061. Total energy = 6474.7918 kcal/mol (6468.3104 without restraints) Performing minimization step: 3062. Total energy = 6472.7674 kcal/mol (6466.2874 without restraints) Performing minimization step: 3063. Total energy = 6470.7449 kcal/mol (6464.2661 without restraints) Performing minimization step: 3064. Total energy = 6468.7238 kcal/mol (6462.2463 without restraints) Performing minimization step: 3065. Total energy = 6466.7046 kcal/mol (6460.2283 without restraints) Performing minimization step: 3066. Total energy = 6464.6868 kcal/mol (6458.2117 without restraints) Performing minimization step: 3067. Total energy = 6462.6706 kcal/mol (6456.1968 without restraints) Performing minimization step: 3068. Total energy = 6460.6559 kcal/mol (6454.1834 without restraints) Performing minimization step: 3069. Total energy = 6458.6432 kcal/mol (6452.1719 without restraints) Performing minimization step: 3070. Total energy = 6456.6317 kcal/mol (6450.1617 without restraints) Performing minimization step: 3071. Total energy = 6454.6221 kcal/mol (6448.1533 without restraints) Performing minimization step: 3072. Total energy = 6452.6142 kcal/mol (6446.1467 without restraints) Performing minimization step: 3073. Total energy = 6450.6079 kcal/mol (6444.1417 without restraints) Performing minimization step: 3074. Total energy = 6448.6036 kcal/mol (6442.1387 without restraints) Performing minimization step: 3075. Total energy = 6446.6008 kcal/mol (6440.1370 without restraints) Performing minimization step: 3076. Total energy = 6444.5995 kcal/mol (6438.1370 without restraints) Performing minimization step: 3077. Total energy = 6442.6003 kcal/mol (6436.1390 without restraints) Performing minimization step: 3078. Total energy = 6440.6024 kcal/mol (6434.1426 without restraints) Performing minimization step: 3079. Total energy = 6438.6063 kcal/mol (6432.1476 without restraints) Performing minimization step: 3080. Total energy = 6436.6115 kcal/mol (6430.1540 without restraints) Performing minimization step: 3081. Total energy = 6434.6186 kcal/mol (6428.1624 without restraints) Performing minimization step: 3082. Total energy = 6432.6271 kcal/mol (6426.1722 without restraints) Performing minimization step: 3083. Total energy = 6430.6376 kcal/mol (6424.1839 without restraints) Performing minimization step: 3084. Total energy = 6428.6498 kcal/mol (6422.1974 without restraints) Performing minimization step: 3085. Total energy = 6426.6636 kcal/mol (6420.2125 without restraints) Performing minimization step: 3086. Total energy = 6424.6793 kcal/mol (6418.2294 without restraints) Performing minimization step: 3087. Total energy = 6422.6966 kcal/mol (6416.2480 without restraints) Performing minimization step: 3088. Total energy = 6420.7154 kcal/mol (6414.2680 without restraints) Performing minimization step: 3089. Total energy = 6418.7360 kcal/mol (6412.2898 without restraints) Performing minimization step: 3090. Total energy = 6416.7585 kcal/mol (6410.3137 without restraints) Performing minimization step: 3091. Total energy = 6414.7823 kcal/mol (6408.3387 without restraints) Performing minimization step: 3092. Total energy = 6412.8080 kcal/mol (6406.3657 without restraints) Performing minimization step: 3093. Total energy = 6410.8356 kcal/mol (6404.3946 without restraints) Performing minimization step: 3094. Total energy = 6408.8647 kcal/mol (6402.4249 without restraints) Performing minimization step: 3095. Total energy = 6406.8954 kcal/mol (6400.4569 without restraints) Performing minimization step: 3096. Total energy = 6404.9278 kcal/mol (6398.4906 without restraints) Performing minimization step: 3097. Total energy = 6402.9620 kcal/mol (6396.5260 without restraints) Performing minimization step: 3098. Total energy = 6400.9978 kcal/mol (6394.5631 without restraints) Performing minimization step: 3099. Total energy = 6399.0351 kcal/mol (6392.6016 without restraints) Performing minimization step: 3100. Total energy = 6397.0742 kcal/mol (6390.6420 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 6395.1150 kcal/mol (6388.6841 without restraints) Performing minimization step: 3102. Total energy = 6393.1577 kcal/mol (6386.7281 without restraints) Performing minimization step: 3103. Total energy = 6391.2019 kcal/mol (6384.7735 without restraints) Performing minimization step: 3104. Total energy = 6389.2478 kcal/mol (6382.8207 without restraints) Performing minimization step: 3105. Total energy = 6387.2955 kcal/mol (6380.8696 without restraints) Performing minimization step: 3106. Total energy = 6385.3448 kcal/mol (6378.9202 without restraints) Performing minimization step: 3107. Total energy = 6383.3958 kcal/mol (6376.9724 without restraints) Performing minimization step: 3108. Total energy = 6381.4485 kcal/mol (6375.0265 without restraints) Performing minimization step: 3109. Total energy = 6379.5034 kcal/mol (6373.0826 without restraints) Performing minimization step: 3110. Total energy = 6377.5594 kcal/mol (6371.1399 without restraints) Performing minimization step: 3111. Total energy = 6375.6174 kcal/mol (6369.1991 without restraints) Performing minimization step: 3112. Total energy = 6373.6767 kcal/mol (6367.2596 without restraints) Performing minimization step: 3113. Total energy = 6371.7383 kcal/mol (6365.3226 without restraints) Performing minimization step: 3114. Total energy = 6369.8016 kcal/mol (6363.3872 without restraints) Performing minimization step: 3115. Total energy = 6367.8663 kcal/mol (6361.4532 without restraints) Performing minimization step: 3116. Total energy = 6365.9328 kcal/mol (6359.5209 without restraints) Performing minimization step: 3117. Total energy = 6364.0008 kcal/mol (6357.5901 without restraints) Performing minimization step: 3118. Total energy = 6362.0708 kcal/mol (6355.6615 without restraints) Performing minimization step: 3119. Total energy = 6360.1431 kcal/mol (6353.7351 without restraints) Performing minimization step: 3120. Total energy = 6358.2165 kcal/mol (6351.8097 without restraints) Performing minimization step: 3121. Total energy = 6356.2916 kcal/mol (6349.8860 without restraints) Performing minimization step: 3122. Total energy = 6354.3689 kcal/mol (6347.9649 without restraints) Performing minimization step: 3123. Total energy = 6352.4478 kcal/mol (6346.0449 without restraints) Performing minimization step: 3124. Total energy = 6350.5283 kcal/mol (6344.1268 without restraints) Performing minimization step: 3125. Total energy = 6348.6109 kcal/mol (6342.2105 without restraints) Performing minimization step: 3126. Total energy = 6346.6948 kcal/mol (6340.2957 without restraints) Performing minimization step: 3127. Total energy = 6344.7805 kcal/mol (6338.3826 without restraints) Performing minimization step: 3128. Total energy = 6342.8679 kcal/mol (6336.4714 without restraints) Performing minimization step: 3129. Total energy = 6340.9572 kcal/mol (6334.5619 without restraints) Performing minimization step: 3130. Total energy = 6339.0480 kcal/mol (6332.6539 without restraints) Performing minimization step: 3131. Total energy = 6337.1408 kcal/mol (6330.7481 without restraints) Performing minimization step: 3132. Total energy = 6335.2348 kcal/mol (6328.8433 without restraints) Performing minimization step: 3133. Total energy = 6333.3307 kcal/mol (6326.9405 without restraints) Performing minimization step: 3134. Total energy = 6331.4288 kcal/mol (6325.0399 without restraints) Performing minimization step: 3135. Total energy = 6329.5281 kcal/mol (6323.1405 without restraints) Performing minimization step: 3136. Total energy = 6327.6291 kcal/mol (6321.2426 without restraints) Performing minimization step: 3137. Total energy = 6325.7317 kcal/mol (6319.3466 without restraints) Performing minimization step: 3138. Total energy = 6323.8362 kcal/mol (6317.4524 without restraints) Performing minimization step: 3139. Total energy = 6321.9428 kcal/mol (6315.5603 without restraints) Performing minimization step: 3140. Total energy = 6320.0510 kcal/mol (6313.6697 without restraints) Performing minimization step: 3141. Total energy = 6318.1602 kcal/mol (6311.7802 without restraints) Performing minimization step: 3142. Total energy = 6316.2718 kcal/mol (6309.8932 without restraints) Performing minimization step: 3143. Total energy = 6314.3851 kcal/mol (6308.0077 without restraints) Performing minimization step: 3144. Total energy = 6312.5001 kcal/mol (6306.1239 without restraints) Performing minimization step: 3145. Total energy = 6310.6168 kcal/mol (6304.2419 without restraints) Performing minimization step: 3146. Total energy = 6308.7353 kcal/mol (6302.3617 without restraints) Performing minimization step: 3147. Total energy = 6306.8555 kcal/mol (6300.4831 without restraints) Performing minimization step: 3148. Total energy = 6304.9774 kcal/mol (6298.6065 without restraints) Performing minimization step: 3149. Total energy = 6303.1016 kcal/mol (6296.7320 without restraints) Performing minimization step: 3150. Total energy = 6301.2269 kcal/mol (6294.8585 without restraints) Performing minimization step: 3151. Total energy = 6299.3544 kcal/mol (6292.9874 without restraints) Performing minimization step: 3152. Total energy = 6297.4841 kcal/mol (6291.1182 without restraints) Performing minimization step: 3153. Total energy = 6295.6151 kcal/mol (6289.2505 without restraints) Performing minimization step: 3154. Total energy = 6293.7478 kcal/mol (6287.3845 without restraints) Performing minimization step: 3155. Total energy = 6291.8824 kcal/mol (6285.5203 without restraints) Performing minimization step: 3156. Total energy = 6290.0184 kcal/mol (6283.6576 without restraints) Performing minimization step: 3157. Total energy = 6288.1566 kcal/mol (6281.7973 without restraints) Performing minimization step: 3158. Total energy = 6286.2966 kcal/mol (6279.9384 without restraints) Performing minimization step: 3159. Total energy = 6284.4378 kcal/mol (6278.0809 without restraints) Performing minimization step: 3160. Total energy = 6282.5808 kcal/mol (6276.2252 without restraints) Performing minimization step: 3161. Total energy = 6280.7255 kcal/mol (6274.3712 without restraints) Performing minimization step: 3162. Total energy = 6278.8718 kcal/mol (6272.5188 without restraints) Performing minimization step: 3163. Total energy = 6277.0202 kcal/mol (6270.6685 without restraints) Performing minimization step: 3164. Total energy = 6275.1708 kcal/mol (6268.8203 without restraints) Performing minimization step: 3165. Total energy = 6273.3225 kcal/mol (6266.9734 without restraints) Performing minimization step: 3166. Total energy = 6271.4762 kcal/mol (6265.1284 without restraints) Performing minimization step: 3167. Total energy = 6269.6317 kcal/mol (6263.2851 without restraints) Performing minimization step: 3168. Total energy = 6267.7886 kcal/mol (6261.4433 without restraints) Performing minimization step: 3169. Total energy = 6265.9479 kcal/mol (6259.6040 without restraints) Performing minimization step: 3170. Total energy = 6264.1083 kcal/mol (6257.7656 without restraints) Performing minimization step: 3171. Total energy = 6262.2699 kcal/mol (6255.9284 without restraints) Performing minimization step: 3172. Total energy = 6260.4337 kcal/mol (6254.0936 without restraints) Performing minimization step: 3173. Total energy = 6258.5995 kcal/mol (6252.2607 without restraints) Performing minimization step: 3174. Total energy = 6256.7673 kcal/mol (6250.4297 without restraints) Performing minimization step: 3175. Total energy = 6254.9366 kcal/mol (6248.6003 without restraints) Performing minimization step: 3176. Total energy = 6253.1079 kcal/mol (6246.7729 without restraints) Performing minimization step: 3177. Total energy = 6251.2808 kcal/mol (6244.9471 without restraints) Performing minimization step: 3178. Total energy = 6249.4555 kcal/mol (6243.1231 without restraints) Performing minimization step: 3179. Total energy = 6247.6321 kcal/mol (6241.3009 without restraints) Performing minimization step: 3180. Total energy = 6245.8103 kcal/mol (6239.4804 without restraints) Performing minimization step: 3181. Total energy = 6243.9902 kcal/mol (6237.6616 without restraints) Performing minimization step: 3182. Total energy = 6242.1718 kcal/mol (6235.8446 without restraints) Performing minimization step: 3183. Total energy = 6240.3552 kcal/mol (6234.0293 without restraints) Performing minimization step: 3184. Total energy = 6238.5407 kcal/mol (6232.2160 without restraints) Performing minimization step: 3185. Total energy = 6236.7278 kcal/mol (6230.4045 without restraints) Performing minimization step: 3186. Total energy = 6234.9165 kcal/mol (6228.5945 without restraints) Performing minimization step: 3187. Total energy = 6233.1068 kcal/mol (6226.7860 without restraints) Performing minimization step: 3188. Total energy = 6231.2990 kcal/mol (6224.9795 without restraints) Performing minimization step: 3189. Total energy = 6229.4929 kcal/mol (6223.1747 without restraints) Performing minimization step: 3190. Total energy = 6227.6891 kcal/mol (6221.3722 without restraints) Performing minimization step: 3191. Total energy = 6225.8871 kcal/mol (6219.5715 without restraints) Performing minimization step: 3192. Total energy = 6224.0865 kcal/mol (6217.7723 without restraints) Performing minimization step: 3193. Total energy = 6222.2880 kcal/mol (6215.9751 without restraints) Performing minimization step: 3194. Total energy = 6220.4907 kcal/mol (6214.1790 without restraints) Performing minimization step: 3195. Total energy = 6218.6955 kcal/mol (6212.3851 without restraints) Performing minimization step: 3196. Total energy = 6216.9014 kcal/mol (6210.5923 without restraints) Performing minimization step: 3197. Total energy = 6215.1095 kcal/mol (6208.8016 without restraints) Performing minimization step: 3198. Total energy = 6213.3194 kcal/mol (6207.0129 without restraints) Performing minimization step: 3199. Total energy = 6211.5308 kcal/mol (6205.2256 without restraints) Performing minimization step: 3200. Total energy = 6209.7444 kcal/mol (6203.4405 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 6207.9599 kcal/mol (6201.6574 without restraints) Performing minimization step: 3202. Total energy = 6206.1772 kcal/mol (6199.8759 without restraints) Performing minimization step: 3203. Total energy = 6204.3958 kcal/mol (6198.0958 without restraints) Performing minimization step: 3204. Total energy = 6202.6163 kcal/mol (6196.3176 without restraints) Performing minimization step: 3205. Total energy = 6200.8388 kcal/mol (6194.5415 without restraints) Performing minimization step: 3206. Total energy = 6199.0629 kcal/mol (6192.7668 without restraints) Performing minimization step: 3207. Total energy = 6197.2889 kcal/mol (6190.9941 without restraints) Performing minimization step: 3208. Total energy = 6195.5168 kcal/mol (6189.2232 without restraints) Performing minimization step: 3209. Total energy = 6193.7460 kcal/mol (6187.4538 without restraints) Performing minimization step: 3210. Total energy = 6191.9768 kcal/mol (6185.6860 without restraints) Performing minimization step: 3211. Total energy = 6190.2097 kcal/mol (6183.9201 without restraints) Performing minimization step: 3212. Total energy = 6188.4445 kcal/mol (6182.1561 without restraints) Performing minimization step: 3213. Total energy = 6186.6810 kcal/mol (6180.3940 without restraints) Performing minimization step: 3214. Total energy = 6184.9191 kcal/mol (6178.6333 without restraints) Performing minimization step: 3215. Total energy = 6183.1591 kcal/mol (6176.8747 without restraints) Performing minimization step: 3216. Total energy = 6181.4005 kcal/mol (6175.1174 without restraints) Performing minimization step: 3217. Total energy = 6179.6442 kcal/mol (6173.3624 without restraints) Performing minimization step: 3218. Total energy = 6177.8895 kcal/mol (6171.6090 without restraints) Performing minimization step: 3219. Total energy = 6176.1370 kcal/mol (6169.8578 without restraints) Performing minimization step: 3220. Total energy = 6174.3856 kcal/mol (6168.1078 without restraints) Performing minimization step: 3221. Total energy = 6172.6361 kcal/mol (6166.3595 without restraints) Performing minimization step: 3222. Total energy = 6170.8882 kcal/mol (6164.6129 without restraints) Performing minimization step: 3223. Total energy = 6169.1421 kcal/mol (6162.8681 without restraints) Performing minimization step: 3224. Total energy = 6167.3980 kcal/mol (6161.1255 without restraints) Performing minimization step: 3225. Total energy = 6165.6560 kcal/mol (6159.3847 without restraints) Performing minimization step: 3226. Total energy = 6163.9154 kcal/mol (6157.6453 without restraints) Performing minimization step: 3227. Total energy = 6162.1767 kcal/mol (6155.9079 without restraints) Performing minimization step: 3228. Total energy = 6160.4396 kcal/mol (6154.1721 without restraints) Performing minimization step: 3229. Total energy = 6158.7040 kcal/mol (6152.4379 without restraints) Performing minimization step: 3230. Total energy = 6156.9700 kcal/mol (6150.7051 without restraints) Performing minimization step: 3231. Total energy = 6155.2384 kcal/mol (6148.9750 without restraints) Performing minimization step: 3232. Total energy = 6153.5085 kcal/mol (6147.2463 without restraints) Performing minimization step: 3233. Total energy = 6151.7803 kcal/mol (6145.5194 without restraints) Performing minimization step: 3234. Total energy = 6150.0537 kcal/mol (6143.7941 without restraints) Performing minimization step: 3235. Total energy = 6148.3287 kcal/mol (6142.0704 without restraints) Performing minimization step: 3236. Total energy = 6146.6055 kcal/mol (6140.3485 without restraints) Performing minimization step: 3237. Total energy = 6144.8845 kcal/mol (6138.6287 without restraints) Performing minimization step: 3238. Total energy = 6143.1646 kcal/mol (6136.9102 without restraints) Performing minimization step: 3239. Total energy = 6141.4464 kcal/mol (6135.1933 without restraints) Performing minimization step: 3240. Total energy = 6139.7303 kcal/mol (6133.4786 without restraints) Performing minimization step: 3241. Total energy = 6138.0160 kcal/mol (6131.7655 without restraints) Performing minimization step: 3242. Total energy = 6136.3032 kcal/mol (6130.0540 without restraints) Performing minimization step: 3243. Total energy = 6134.5924 kcal/mol (6128.3445 without restraints) Performing minimization step: 3244. Total energy = 6132.8831 kcal/mol (6126.6365 without restraints) Performing minimization step: 3245. Total energy = 6131.1759 kcal/mol (6124.9307 without restraints) Performing minimization step: 3246. Total energy = 6129.4702 kcal/mol (6123.2263 without restraints) Performing minimization step: 3247. Total energy = 6127.7666 kcal/mol (6121.5242 without restraints) Performing minimization step: 3248. Total energy = 6126.0644 kcal/mol (6119.8232 without restraints) Performing minimization step: 3249. Total energy = 6124.3638 kcal/mol (6118.1239 without restraints) Performing minimization step: 3250. Total energy = 6122.6650 kcal/mol (6116.4264 without restraints) Performing minimization step: 3251. Total energy = 6120.9679 kcal/mol (6114.7306 without restraints) Performing minimization step: 3252. Total energy = 6119.2725 kcal/mol (6113.0365 without restraints) Performing minimization step: 3253. Total energy = 6117.5790 kcal/mol (6111.3443 without restraints) Performing minimization step: 3254. Total energy = 6115.8872 kcal/mol (6109.6538 without restraints) Performing minimization step: 3255. Total energy = 6114.1970 kcal/mol (6107.9649 without restraints) Performing minimization step: 3256. Total energy = 6112.5086 kcal/mol (6106.2778 without restraints) Performing minimization step: 3257. Total energy = 6110.8219 kcal/mol (6104.5924 without restraints) Performing minimization step: 3258. Total energy = 6109.1373 kcal/mol (6102.9093 without restraints) Performing minimization step: 3259. Total energy = 6107.4542 kcal/mol (6101.2274 without restraints) Performing minimization step: 3260. Total energy = 6105.7730 kcal/mol (6099.5475 without restraints) Performing minimization step: 3261. Total energy = 6104.0932 kcal/mol (6097.8689 without restraints) Performing minimization step: 3262. Total energy = 6102.4151 kcal/mol (6096.1922 without restraints) Performing minimization step: 3263. Total energy = 6100.7389 kcal/mol (6094.5174 without restraints) Performing minimization step: 3264. Total energy = 6099.0644 kcal/mol (6092.8442 without restraints) Performing minimization step: 3265. Total energy = 6097.3919 kcal/mol (6091.1731 without restraints) Performing minimization step: 3266. Total energy = 6095.7210 kcal/mol (6089.5034 without restraints) Performing minimization step: 3267. Total energy = 6094.0519 kcal/mol (6087.8356 without restraints) Performing minimization step: 3268. Total energy = 6092.3844 kcal/mol (6086.1695 without restraints) Performing minimization step: 3269. Total energy = 6090.7188 kcal/mol (6084.5051 without restraints) Performing minimization step: 3270. Total energy = 6089.0547 kcal/mol (6082.8423 without restraints) Performing minimization step: 3271. Total energy = 6087.3922 kcal/mol (6081.1811 without restraints) Performing minimization step: 3272. Total energy = 6085.7314 kcal/mol (6079.5217 without restraints) Performing minimization step: 3273. Total energy = 6084.0726 kcal/mol (6077.8642 without restraints) Performing minimization step: 3274. Total energy = 6082.4154 kcal/mol (6076.2083 without restraints) Performing minimization step: 3275. Total energy = 6080.7604 kcal/mol (6074.5546 without restraints) Performing minimization step: 3276. Total energy = 6079.1063 kcal/mol (6072.9017 without restraints) Performing minimization step: 3277. Total energy = 6077.4542 kcal/mol (6071.2511 without restraints) Performing minimization step: 3278. Total energy = 6075.8038 kcal/mol (6069.6020 without restraints) Performing minimization step: 3279. Total energy = 6074.1550 kcal/mol (6067.9545 without restraints) Performing minimization step: 3280. Total energy = 6072.5083 kcal/mol (6066.3091 without restraints) Performing minimization step: 3281. Total energy = 6070.8631 kcal/mol (6064.6652 without restraints) Performing minimization step: 3282. Total energy = 6069.2196 kcal/mol (6063.0231 without restraints) Performing minimization step: 3283. Total energy = 6067.5778 kcal/mol (6061.3825 without restraints) Performing minimization step: 3284. Total energy = 6065.9376 kcal/mol (6059.7437 without restraints) Performing minimization step: 3285. Total energy = 6064.2993 kcal/mol (6058.1067 without restraints) Performing minimization step: 3286. Total energy = 6062.6627 kcal/mol (6056.4715 without restraints) Performing minimization step: 3287. Total energy = 6061.0273 kcal/mol (6054.8374 without restraints) Performing minimization step: 3288. Total energy = 6059.3940 kcal/mol (6053.2054 without restraints) Performing minimization step: 3289. Total energy = 6057.7625 kcal/mol (6051.5752 without restraints) Performing minimization step: 3290. Total energy = 6056.1328 kcal/mol (6049.9468 without restraints) Performing minimization step: 3291. Total energy = 6054.5044 kcal/mol (6048.3198 without restraints) Performing minimization step: 3292. Total energy = 6052.8779 kcal/mol (6046.6946 without restraints) Performing minimization step: 3293. Total energy = 6051.2530 kcal/mol (6045.0710 without restraints) Performing minimization step: 3294. Total energy = 6049.6301 kcal/mol (6043.4494 without restraints) Performing minimization step: 3295. Total energy = 6048.0087 kcal/mol (6041.8294 without restraints) Performing minimization step: 3296. Total energy = 6046.3890 kcal/mol (6040.2110 without restraints) Performing minimization step: 3297. Total energy = 6044.7710 kcal/mol (6038.5943 without restraints) Performing minimization step: 3298. Total energy = 6043.1545 kcal/mol (6036.9791 without restraints) Performing minimization step: 3299. Total energy = 6041.5400 kcal/mol (6035.3660 without restraints) Performing minimization step: 3300. Total energy = 6039.9275 kcal/mol (6033.7547 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 6038.3162 kcal/mol (6032.1448 without restraints) Performing minimization step: 3302. Total energy = 6036.7067 kcal/mol (6030.5366 without restraints) Performing minimization step: 3303. Total energy = 6035.0993 kcal/mol (6028.9305 without restraints) Performing minimization step: 3304. Total energy = 6033.4931 kcal/mol (6027.3257 without restraints) Performing minimization step: 3305. Total energy = 6031.8888 kcal/mol (6025.7227 without restraints) Performing minimization step: 3306. Total energy = 6030.2860 kcal/mol (6024.1212 without restraints) Performing minimization step: 3307. Total energy = 6028.6848 kcal/mol (6022.5213 without restraints) Performing minimization step: 3308. Total energy = 6027.0852 kcal/mol (6020.9232 without restraints) Performing minimization step: 3309. Total energy = 6025.4878 kcal/mol (6019.3270 without restraints) Performing minimization step: 3310. Total energy = 6023.8918 kcal/mol (6017.7323 without restraints) Performing minimization step: 3311. Total energy = 6022.2979 kcal/mol (6016.1397 without restraints) Performing minimization step: 3312. Total energy = 6020.7051 kcal/mol (6014.5482 without restraints) Performing minimization step: 3313. Total energy = 6019.1142 kcal/mol (6012.9588 without restraints) Performing minimization step: 3314. Total energy = 6017.5246 kcal/mol (6011.3704 without restraints) Performing minimization step: 3315. Total energy = 6015.9370 kcal/mol (6009.7842 without restraints) Performing minimization step: 3316. Total energy = 6014.3512 kcal/mol (6008.1996 without restraints) Performing minimization step: 3317. Total energy = 6012.7667 kcal/mol (6006.6165 without restraints) Performing minimization step: 3318. Total energy = 6011.1840 kcal/mol (6005.0351 without restraints) Performing minimization step: 3319. Total energy = 6009.6030 kcal/mol (6003.4555 without restraints) Performing minimization step: 3320. Total energy = 6008.0235 kcal/mol (6001.8772 without restraints) Performing minimization step: 3321. Total energy = 6006.4459 kcal/mol (6000.3010 without restraints) Performing minimization step: 3322. Total energy = 6004.8701 kcal/mol (5998.7267 without restraints) Performing minimization step: 3323. Total energy = 6003.2958 kcal/mol (5997.1536 without restraints) Performing minimization step: 3324. Total energy = 6001.7230 kcal/mol (5995.5821 without restraints) Performing minimization step: 3325. Total energy = 6000.1523 kcal/mol (5994.0127 without restraints) Performing minimization step: 3326. Total energy = 5998.5830 kcal/mol (5992.4447 without restraints) Performing minimization step: 3327. Total energy = 5997.0154 kcal/mol (5990.8784 without restraints) Performing minimization step: 3328. Total energy = 5995.4494 kcal/mol (5989.3138 without restraints) Performing minimization step: 3329. Total energy = 5993.8848 kcal/mol (5987.7505 without restraints) Performing minimization step: 3330. Total energy = 5992.3224 kcal/mol (5986.1896 without restraints) Performing minimization step: 3331. Total energy = 5990.7611 kcal/mol (5984.6295 without restraints) Performing minimization step: 3332. Total energy = 5989.2015 kcal/mol (5983.0712 without restraints) Performing minimization step: 3333. Total energy = 5987.6438 kcal/mol (5981.5149 without restraints) Performing minimization step: 3334. Total energy = 5986.0878 kcal/mol (5979.9600 without restraints) Performing minimization step: 3335. Total energy = 5984.5333 kcal/mol (5978.4070 without restraints) Performing minimization step: 3336. Total energy = 5982.9807 kcal/mol (5976.8557 without restraints) Performing minimization step: 3337. Total energy = 5981.4293 kcal/mol (5975.3056 without restraints) Performing minimization step: 3338. Total energy = 5979.8795 kcal/mol (5973.7571 without restraints) Performing minimization step: 3339. Total energy = 5978.3313 kcal/mol (5972.2103 without restraints) Performing minimization step: 3340. Total energy = 5976.7849 kcal/mol (5970.6653 without restraints) Performing minimization step: 3341. Total energy = 5975.2403 kcal/mol (5969.1219 without restraints) Performing minimization step: 3342. Total energy = 5973.6972 kcal/mol (5967.5804 without restraints) Performing minimization step: 3343. Total energy = 5972.1555 kcal/mol (5966.0397 without restraints) Performing minimization step: 3344. Total energy = 5970.6154 kcal/mol (5964.5010 without restraints) Performing minimization step: 3345. Total energy = 5969.0772 kcal/mol (5962.9641 without restraints) Performing minimization step: 3346. Total energy = 5967.5405 kcal/mol (5961.4289 without restraints) Performing minimization step: 3347. Total energy = 5966.0061 kcal/mol (5959.8958 without restraints) Performing minimization step: 3348. Total energy = 5964.4729 kcal/mol (5958.3639 without restraints) Performing minimization step: 3349. Total energy = 5962.9411 kcal/mol (5956.8333 without restraints) Performing minimization step: 3350. Total energy = 5961.4107 kcal/mol (5955.3043 without restraints) Performing minimization step: 3351. Total energy = 5959.8821 kcal/mol (5953.7771 without restraints) Performing minimization step: 3352. Total energy = 5958.3552 kcal/mol (5952.2515 without restraints) Performing minimization step: 3353. Total energy = 5956.8297 kcal/mol (5950.7274 without restraints) Performing minimization step: 3354. Total energy = 5955.3057 kcal/mol (5949.2048 without restraints) Performing minimization step: 3355. Total energy = 5953.7835 kcal/mol (5947.6838 without restraints) Performing minimization step: 3356. Total energy = 5952.2626 kcal/mol (5946.1642 without restraints) Performing minimization step: 3357. Total energy = 5950.7442 kcal/mol (5944.6472 without restraints) Performing minimization step: 3358. Total energy = 5949.2271 kcal/mol (5943.1314 without restraints) Performing minimization step: 3359. Total energy = 5947.7114 kcal/mol (5941.6171 without restraints) Performing minimization step: 3360. Total energy = 5946.1974 kcal/mol (5940.1045 without restraints) Performing minimization step: 3361. Total energy = 5944.6848 kcal/mol (5938.5931 without restraints) Performing minimization step: 3362. Total energy = 5943.1736 kcal/mol (5937.0833 without restraints) Performing minimization step: 3363. Total energy = 5941.6641 kcal/mol (5935.5751 without restraints) Performing minimization step: 3364. Total energy = 5940.1562 kcal/mol (5934.0685 without restraints) Performing minimization step: 3365. Total energy = 5938.6503 kcal/mol (5932.5640 without restraints) Performing minimization step: 3366. Total energy = 5937.1456 kcal/mol (5931.0606 without restraints) Performing minimization step: 3367. Total energy = 5935.6429 kcal/mol (5929.5592 without restraints) Performing minimization step: 3368. Total energy = 5934.1415 kcal/mol (5928.0592 without restraints) Performing minimization step: 3369. Total energy = 5932.6415 kcal/mol (5926.5605 without restraints) Performing minimization step: 3370. Total energy = 5931.1431 kcal/mol (5925.0634 without restraints) Performing minimization step: 3371. Total energy = 5929.6461 kcal/mol (5923.5676 without restraints) Performing minimization step: 3372. Total energy = 5928.1507 kcal/mol (5922.0737 without restraints) Performing minimization step: 3373. Total energy = 5926.6570 kcal/mol (5920.5813 without restraints) Performing minimization step: 3374. Total energy = 5925.1648 kcal/mol (5919.0904 without restraints) Performing minimization step: 3375. Total energy = 5923.6742 kcal/mol (5917.6012 without restraints) Performing minimization step: 3376. Total energy = 5922.1850 kcal/mol (5916.1133 without restraints) Performing minimization step: 3377. Total energy = 5920.6973 kcal/mol (5914.6269 without restraints) Performing minimization step: 3378. Total energy = 5919.2113 kcal/mol (5913.1423 without restraints) Performing minimization step: 3379. Total energy = 5917.7271 kcal/mol (5911.6594 without restraints) Performing minimization step: 3380. Total energy = 5916.2447 kcal/mol (5910.1783 without restraints) Performing minimization step: 3381. Total energy = 5914.7637 kcal/mol (5908.6987 without restraints) Performing minimization step: 3382. Total energy = 5913.2841 kcal/mol (5907.2206 without restraints) Performing minimization step: 3383. Total energy = 5911.8061 kcal/mol (5905.7438 without restraints) Performing minimization step: 3384. Total energy = 5910.3294 kcal/mol (5904.2685 without restraints) Performing minimization step: 3385. Total energy = 5908.8542 kcal/mol (5902.7945 without restraints) Performing minimization step: 3386. Total energy = 5907.3808 kcal/mol (5901.3225 without restraints) Performing minimization step: 3387. Total energy = 5905.9089 kcal/mol (5899.8519 without restraints) Performing minimization step: 3388. Total energy = 5904.4389 kcal/mol (5898.3832 without restraints) Performing minimization step: 3389. Total energy = 5902.9700 kcal/mol (5896.9157 without restraints) Performing minimization step: 3390. Total energy = 5901.5025 kcal/mol (5895.4497 without restraints) Performing minimization step: 3391. Total energy = 5900.0365 kcal/mol (5893.9846 without restraints) Performing minimization step: 3392. Total energy = 5898.5723 kcal/mol (5892.5221 without restraints) Performing minimization step: 3393. Total energy = 5897.1099 kcal/mol (5891.0611 without restraints) Performing minimization step: 3394. Total energy = 5895.6487 kcal/mol (5889.6009 without restraints) Performing minimization step: 3395. Total energy = 5894.1890 kcal/mol (5888.1427 without restraints) Performing minimization step: 3396. Total energy = 5892.7307 kcal/mol (5886.6858 without restraints) Performing minimization step: 3397. Total energy = 5891.2741 kcal/mol (5885.2305 without restraints) Performing minimization step: 3398. Total energy = 5889.8192 kcal/mol (5883.7769 without restraints) Performing minimization step: 3399. Total energy = 5888.3655 kcal/mol (5882.3246 without restraints) Performing minimization step: 3400. Total energy = 5886.9134 kcal/mol (5880.8738 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 5885.4626 kcal/mol (5879.4244 without restraints) Performing minimization step: 3402. Total energy = 5884.0136 kcal/mol (5877.9766 without restraints) Performing minimization step: 3403. Total energy = 5882.5660 kcal/mol (5876.5304 without restraints) Performing minimization step: 3404. Total energy = 5881.1200 kcal/mol (5875.0858 without restraints) Performing minimization step: 3405. Total energy = 5879.6756 kcal/mol (5873.6426 without restraints) Performing minimization step: 3406. Total energy = 5878.2324 kcal/mol (5872.2009 without restraints) Performing minimization step: 3407. Total energy = 5876.7913 kcal/mol (5870.7610 without restraints) Performing minimization step: 3408. Total energy = 5875.3513 kcal/mol (5869.3223 without restraints) Performing minimization step: 3409. Total energy = 5873.9126 kcal/mol (5867.8850 without restraints) Performing minimization step: 3410. Total energy = 5872.4757 kcal/mol (5866.4495 without restraints) Performing minimization step: 3411. Total energy = 5871.0401 kcal/mol (5865.0152 without restraints) Performing minimization step: 3412. Total energy = 5869.6060 kcal/mol (5863.5825 without restraints) Performing minimization step: 3413. Total energy = 5868.1738 kcal/mol (5862.1519 without restraints) Performing minimization step: 3414. Total energy = 5866.7432 kcal/mol (5860.7223 without restraints) Performing minimization step: 3415. Total energy = 5865.3133 kcal/mol (5859.2938 without restraints) Performing minimization step: 3416. Total energy = 5863.8851 kcal/mol (5857.8669 without restraints) Performing minimization step: 3417. Total energy = 5862.4589 kcal/mol (5856.4420 without restraints) Performing minimization step: 3418. Total energy = 5861.0337 kcal/mol (5855.0182 without restraints) Performing minimization step: 3419. Total energy = 5859.6099 kcal/mol (5853.5958 without restraints) Performing minimization step: 3420. Total energy = 5858.1877 kcal/mol (5852.1749 without restraints) Performing minimization step: 3421. Total energy = 5856.7670 kcal/mol (5850.7556 without restraints) Performing minimization step: 3422. Total energy = 5855.3478 kcal/mol (5849.3376 without restraints) Performing minimization step: 3423. Total energy = 5853.9305 kcal/mol (5847.9217 without restraints) Performing minimization step: 3424. Total energy = 5852.5141 kcal/mol (5846.5066 without restraints) Performing minimization step: 3425. Total energy = 5851.0992 kcal/mol (5845.0931 without restraints) Performing minimization step: 3426. Total energy = 5849.6862 kcal/mol (5843.6815 without restraints) Performing minimization step: 3427. Total energy = 5848.2743 kcal/mol (5842.2708 without restraints) Performing minimization step: 3428. Total energy = 5846.8636 kcal/mol (5840.8615 without restraints) Performing minimization step: 3429. Total energy = 5845.4547 kcal/mol (5839.4540 without restraints) Performing minimization step: 3430. Total energy = 5844.0469 kcal/mol (5838.0475 without restraints) Performing minimization step: 3431. Total energy = 5842.6411 kcal/mol (5836.6430 without restraints) Performing minimization step: 3432. Total energy = 5841.2364 kcal/mol (5835.2397 without restraints) Performing minimization step: 3433. Total energy = 5839.8332 kcal/mol (5833.8378 without restraints) Performing minimization step: 3434. Total energy = 5838.4319 kcal/mol (5832.4380 without restraints) Performing minimization step: 3435. Total energy = 5837.0317 kcal/mol (5831.0390 without restraints) Performing minimization step: 3436. Total energy = 5835.6330 kcal/mol (5829.6416 without restraints) Performing minimization step: 3437. Total energy = 5834.2356 kcal/mol (5828.2455 without restraints) Performing minimization step: 3438. Total energy = 5832.8397 kcal/mol (5826.8510 without restraints) Performing minimization step: 3439. Total energy = 5831.4451 kcal/mol (5825.4577 without restraints) Performing minimization step: 3440. Total energy = 5830.0525 kcal/mol (5824.0665 without restraints) Performing minimization step: 3441. Total energy = 5828.6609 kcal/mol (5822.6763 without restraints) Performing minimization step: 3442. Total energy = 5827.2707 kcal/mol (5821.2874 without restraints) Performing minimization step: 3443. Total energy = 5825.8818 kcal/mol (5819.8998 without restraints) Performing minimization step: 3444. Total energy = 5824.4945 kcal/mol (5818.5139 without restraints) Performing minimization step: 3445. Total energy = 5823.1084 kcal/mol (5817.1292 without restraints) Performing minimization step: 3446. Total energy = 5821.7238 kcal/mol (5815.7459 without restraints) Performing minimization step: 3447. Total energy = 5820.3410 kcal/mol (5814.3644 without restraints) Performing minimization step: 3448. Total energy = 5818.9592 kcal/mol (5812.9839 without restraints) Performing minimization step: 3449. Total energy = 5817.5788 kcal/mol (5811.6049 without restraints) Performing minimization step: 3450. Total energy = 5816.1999 kcal/mol (5810.2274 without restraints) Performing minimization step: 3451. Total energy = 5814.8226 kcal/mol (5808.8514 without restraints) Performing minimization step: 3452. Total energy = 5813.4466 kcal/mol (5807.4769 without restraints) Performing minimization step: 3453. Total energy = 5812.0724 kcal/mol (5806.1038 without restraints) Performing minimization step: 3454. Total energy = 5810.6990 kcal/mol (5804.7318 without restraints) Performing minimization step: 3455. Total energy = 5809.3273 kcal/mol (5803.3614 without restraints) Performing minimization step: 3456. Total energy = 5807.9567 kcal/mol (5801.9922 without restraints) Performing minimization step: 3457. Total energy = 5806.5881 kcal/mol (5800.6250 without restraints) Performing minimization step: 3458. Total energy = 5805.2203 kcal/mol (5799.2584 without restraints) Performing minimization step: 3459. Total energy = 5803.8539 kcal/mol (5797.8934 without restraints) Performing minimization step: 3460. Total energy = 5802.4887 kcal/mol (5796.5296 without restraints) Performing minimization step: 3461. Total energy = 5801.1252 kcal/mol (5795.1674 without restraints) Performing minimization step: 3462. Total energy = 5799.7630 kcal/mol (5793.8065 without restraints) Performing minimization step: 3463. Total energy = 5798.4018 kcal/mol (5792.4467 without restraints) Performing minimization step: 3464. Total energy = 5797.0425 kcal/mol (5791.0888 without restraints) Performing minimization step: 3465. Total energy = 5795.6845 kcal/mol (5789.7321 without restraints) Performing minimization step: 3466. Total energy = 5794.3278 kcal/mol (5788.3767 without restraints) Performing minimization step: 3467. Total energy = 5792.9725 kcal/mol (5787.0228 without restraints) Performing minimization step: 3468. Total energy = 5791.6189 kcal/mol (5785.6705 without restraints) Performing minimization step: 3469. Total energy = 5790.2672 kcal/mol (5784.3201 without restraints) Performing minimization step: 3470. Total energy = 5788.9164 kcal/mol (5782.9708 without restraints) Performing minimization step: 3471. Total energy = 5787.5666 kcal/mol (5781.6222 without restraints) Performing minimization step: 3472. Total energy = 5786.2181 kcal/mol (5780.2751 without restraints) Performing minimization step: 3473. Total energy = 5784.8713 kcal/mol (5778.9296 without restraints) Performing minimization step: 3474. Total energy = 5783.5258 kcal/mol (5777.5855 without restraints) Performing minimization step: 3475. Total energy = 5782.1812 kcal/mol (5776.2422 without restraints) Performing minimization step: 3476. Total energy = 5780.8383 kcal/mol (5774.9006 without restraints) Performing minimization step: 3477. Total energy = 5779.4967 kcal/mol (5773.5604 without restraints) Performing minimization step: 3478. Total energy = 5778.1564 kcal/mol (5772.2215 without restraints) Performing minimization step: 3479. Total energy = 5776.8179 kcal/mol (5770.8842 without restraints) Performing minimization step: 3480. Total energy = 5775.4800 kcal/mol (5769.5477 without restraints) Performing minimization step: 3481. Total energy = 5774.1445 kcal/mol (5768.2135 without restraints) Performing minimization step: 3482. Total energy = 5772.8095 kcal/mol (5766.8799 without restraints) Performing minimization step: 3483. Total energy = 5771.4760 kcal/mol (5765.5477 without restraints) Performing minimization step: 3484. Total energy = 5770.1441 kcal/mol (5764.2171 without restraints) Performing minimization step: 3485. Total energy = 5768.8131 kcal/mol (5762.8875 without restraints) Performing minimization step: 3486. Total energy = 5767.4835 kcal/mol (5761.5594 without restraints) Performing minimization step: 3487. Total energy = 5766.1553 kcal/mol (5760.2324 without restraints) Performing minimization step: 3488. Total energy = 5764.8283 kcal/mol (5758.9068 without restraints) Performing minimization step: 3489. Total energy = 5763.5025 kcal/mol (5757.5822 without restraints) Performing minimization step: 3490. Total energy = 5762.1782 kcal/mol (5756.2593 without restraints) Performing minimization step: 3491. Total energy = 5760.8560 kcal/mol (5754.9386 without restraints) Performing minimization step: 3492. Total energy = 5759.5344 kcal/mol (5753.6182 without restraints) Performing minimization step: 3493. Total energy = 5758.2144 kcal/mol (5752.2996 without restraints) Performing minimization step: 3494. Total energy = 5756.8959 kcal/mol (5750.9826 without restraints) Performing minimization step: 3495. Total energy = 5755.5784 kcal/mol (5749.6662 without restraints) Performing minimization step: 3496. Total energy = 5754.2616 kcal/mol (5748.3508 without restraints) Performing minimization step: 3497. Total energy = 5752.9467 kcal/mol (5747.0372 without restraints) Performing minimization step: 3498. Total energy = 5751.6328 kcal/mol (5745.7247 without restraints) Performing minimization step: 3499. Total energy = 5750.3205 kcal/mol (5744.4138 without restraints) Performing minimization step: 3500. Total energy = 5749.0095 kcal/mol (5743.1041 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 5747.6998 kcal/mol (5741.7958 without restraints) Performing minimization step: 3502. Total energy = 5746.3916 kcal/mol (5740.4889 without restraints) Performing minimization step: 3503. Total energy = 5745.0843 kcal/mol (5739.1829 without restraints) Performing minimization step: 3504. Total energy = 5743.7783 kcal/mol (5737.8783 without restraints) Performing minimization step: 3505. Total energy = 5742.4737 kcal/mol (5736.5750 without restraints) Performing minimization step: 3506. Total energy = 5741.1704 kcal/mol (5735.2730 without restraints) Performing minimization step: 3507. Total energy = 5739.8682 kcal/mol (5733.9722 without restraints) Performing minimization step: 3508. Total energy = 5738.5672 kcal/mol (5732.6725 without restraints) Performing minimization step: 3509. Total energy = 5737.2685 kcal/mol (5731.3752 without restraints) Performing minimization step: 3510. Total energy = 5735.9701 kcal/mol (5730.0781 without restraints) Performing minimization step: 3511. Total energy = 5734.6733 kcal/mol (5728.7828 without restraints) Performing minimization step: 3512. Total energy = 5733.3778 kcal/mol (5727.4886 without restraints) Performing minimization step: 3513. Total energy = 5732.0835 kcal/mol (5726.1955 without restraints) Performing minimization step: 3514. Total energy = 5730.7903 kcal/mol (5724.9037 without restraints) Performing minimization step: 3515. Total energy = 5729.4986 kcal/mol (5723.6133 without restraints) Performing minimization step: 3516. Total energy = 5728.2080 kcal/mol (5722.3241 without restraints) Performing minimization step: 3517. Total energy = 5726.9191 kcal/mol (5721.0366 without restraints) Performing minimization step: 3518. Total energy = 5725.6313 kcal/mol (5719.7500 without restraints) Performing minimization step: 3519. Total energy = 5724.3444 kcal/mol (5718.4645 without restraints) Performing minimization step: 3520. Total energy = 5723.0589 kcal/mol (5717.1804 without restraints) Performing minimization step: 3521. Total energy = 5721.7746 kcal/mol (5715.8974 without restraints) Performing minimization step: 3522. Total energy = 5720.4916 kcal/mol (5714.6158 without restraints) Performing minimization step: 3523. Total energy = 5719.2100 kcal/mol (5713.3355 without restraints) Performing minimization step: 3524. Total energy = 5717.9295 kcal/mol (5712.0563 without restraints) Performing minimization step: 3525. Total energy = 5716.6502 kcal/mol (5710.7784 without restraints) Performing minimization step: 3526. Total energy = 5715.3723 kcal/mol (5709.5019 without restraints) Performing minimization step: 3527. Total energy = 5714.0955 kcal/mol (5708.2264 without restraints) Performing minimization step: 3528. Total energy = 5712.8202 kcal/mol (5706.9525 without restraints) Performing minimization step: 3529. Total energy = 5711.5458 kcal/mol (5705.6793 without restraints) Performing minimization step: 3530. Total energy = 5710.2728 kcal/mol (5704.4078 without restraints) Performing minimization step: 3531. Total energy = 5709.0018 kcal/mol (5703.1380 without restraints) Performing minimization step: 3532. Total energy = 5707.7314 kcal/mol (5701.8689 without restraints) Performing minimization step: 3533. Total energy = 5706.4624 kcal/mol (5700.6013 without restraints) Performing minimization step: 3534. Total energy = 5705.1942 kcal/mol (5699.3345 without restraints) Performing minimization step: 3535. Total energy = 5703.9278 kcal/mol (5698.0695 without restraints) Performing minimization step: 3536. Total energy = 5702.6622 kcal/mol (5696.8052 without restraints) Performing minimization step: 3537. Total energy = 5701.3977 kcal/mol (5695.5419 without restraints) Performing minimization step: 3538. Total energy = 5700.1343 kcal/mol (5694.2799 without restraints) Performing minimization step: 3539. Total energy = 5698.8722 kcal/mol (5693.0192 without restraints) Performing minimization step: 3540. Total energy = 5697.6113 kcal/mol (5691.7597 without restraints) Performing minimization step: 3541. Total energy = 5696.3522 kcal/mol (5690.5018 without restraints) Performing minimization step: 3542. Total energy = 5695.0937 kcal/mol (5689.2448 without restraints) Performing minimization step: 3543. Total energy = 5693.8366 kcal/mol (5687.9889 without restraints) Performing minimization step: 3544. Total energy = 5692.5810 kcal/mol (5686.7347 without restraints) Performing minimization step: 3545. Total energy = 5691.3266 kcal/mol (5685.4817 without restraints) Performing minimization step: 3546. Total energy = 5690.0733 kcal/mol (5684.2296 without restraints) Performing minimization step: 3547. Total energy = 5688.8214 kcal/mol (5682.9792 without restraints) Performing minimization step: 3548. Total energy = 5687.5703 kcal/mol (5681.7294 without restraints) Performing minimization step: 3549. Total energy = 5686.3206 kcal/mol (5680.4810 without restraints) Performing minimization step: 3550. Total energy = 5685.0721 kcal/mol (5679.2338 without restraints) Performing minimization step: 3551. Total energy = 5683.8247 kcal/mol (5677.9879 without restraints) Performing minimization step: 3552. Total energy = 5682.5786 kcal/mol (5676.7431 without restraints) Performing minimization step: 3553. Total energy = 5681.3335 kcal/mol (5675.4993 without restraints) Performing minimization step: 3554. Total energy = 5680.0894 kcal/mol (5674.2566 without restraints) Performing minimization step: 3555. Total energy = 5678.8467 kcal/mol (5673.0151 without restraints) Performing minimization step: 3556. Total energy = 5677.6052 kcal/mol (5671.7751 without restraints) Performing minimization step: 3557. Total energy = 5676.3649 kcal/mol (5670.5361 without restraints) Performing minimization step: 3558. Total energy = 5675.1261 kcal/mol (5669.2988 without restraints) Performing minimization step: 3559. Total energy = 5673.8884 kcal/mol (5668.0624 without restraints) Performing minimization step: 3560. Total energy = 5672.6516 kcal/mol (5666.8268 without restraints) Performing minimization step: 3561. Total energy = 5671.4159 kcal/mol (5665.5925 without restraints) Performing minimization step: 3562. Total energy = 5670.1817 kcal/mol (5664.3597 without restraints) Performing minimization step: 3563. Total energy = 5668.9482 kcal/mol (5663.1274 without restraints) Performing minimization step: 3564. Total energy = 5667.7160 kcal/mol (5661.8967 without restraints) Performing minimization step: 3565. Total energy = 5666.4853 kcal/mol (5660.6672 without restraints) Performing minimization step: 3566. Total energy = 5665.2563 kcal/mol (5659.4396 without restraints) Performing minimization step: 3567. Total energy = 5664.0277 kcal/mol (5658.2122 without restraints) Performing minimization step: 3568. Total energy = 5662.8003 kcal/mol (5656.9864 without restraints) Performing minimization step: 3569. Total energy = 5661.5741 kcal/mol (5655.7614 without restraints) Performing minimization step: 3570. Total energy = 5660.3492 kcal/mol (5654.5379 without restraints) Performing minimization step: 3571. Total energy = 5659.1252 kcal/mol (5653.3151 without restraints) Performing minimization step: 3572. Total energy = 5657.9023 kcal/mol (5652.0936 without restraints) Performing minimization step: 3573. Total energy = 5656.6809 kcal/mol (5650.8735 without restraints) Performing minimization step: 3574. Total energy = 5655.4604 kcal/mol (5649.6544 without restraints) Performing minimization step: 3575. Total energy = 5654.2417 kcal/mol (5648.4371 without restraints) Performing minimization step: 3576. Total energy = 5653.0234 kcal/mol (5647.2201 without restraints) Performing minimization step: 3577. Total energy = 5651.8063 kcal/mol (5646.0044 without restraints) Performing minimization step: 3578. Total energy = 5650.5904 kcal/mol (5644.7899 without restraints) Performing minimization step: 3579. Total energy = 5649.3760 kcal/mol (5643.5767 without restraints) Performing minimization step: 3580. Total energy = 5648.1624 kcal/mol (5642.3645 without restraints) Performing minimization step: 3581. Total energy = 5646.9502 kcal/mol (5641.1537 without restraints) Performing minimization step: 3582. Total energy = 5645.7388 kcal/mol (5639.9436 without restraints) Performing minimization step: 3583. Total energy = 5644.5287 kcal/mol (5638.7348 without restraints) Performing minimization step: 3584. Total energy = 5643.3197 kcal/mol (5637.5272 without restraints) Performing minimization step: 3585. Total energy = 5642.1117 kcal/mol (5636.3205 without restraints) Performing minimization step: 3586. Total energy = 5640.9050 kcal/mol (5635.1151 without restraints) Performing minimization step: 3587. Total energy = 5639.7000 kcal/mol (5633.9115 without restraints) Performing minimization step: 3588. Total energy = 5638.4953 kcal/mol (5632.7081 without restraints) Performing minimization step: 3589. Total energy = 5637.2922 kcal/mol (5631.5063 without restraints) Performing minimization step: 3590. Total energy = 5636.0901 kcal/mol (5630.3055 without restraints) Performing minimization step: 3591. Total energy = 5634.8886 kcal/mol (5629.1054 without restraints) Performing minimization step: 3592. Total energy = 5633.6884 kcal/mol (5627.9066 without restraints) Performing minimization step: 3593. Total energy = 5632.4894 kcal/mol (5626.7090 without restraints) Performing minimization step: 3594. Total energy = 5631.2918 kcal/mol (5625.5130 without restraints) Performing minimization step: 3595. Total energy = 5630.0953 kcal/mol (5624.3175 without restraints) Performing minimization step: 3596. Total energy = 5628.8995 kcal/mol (5623.1231 without restraints) Performing minimization step: 3597. Total energy = 5627.7046 kcal/mol (5621.9295 without restraints) Performing minimization step: 3598. Total energy = 5626.5111 kcal/mol (5620.7373 without restraints) Performing minimization step: 3599. Total energy = 5625.3193 kcal/mol (5619.5468 without restraints) Performing minimization step: 3600. Total energy = 5624.1282 kcal/mol (5618.3571 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 5622.9379 kcal/mol (5617.1683 without restraints) Performing minimization step: 3602. Total energy = 5621.7490 kcal/mol (5615.9805 without restraints) Performing minimization step: 3603. Total energy = 5620.5612 kcal/mol (5614.7943 without restraints) Performing minimization step: 3604. Total energy = 5619.3744 kcal/mol (5613.6087 without restraints) Performing minimization step: 3605. Total energy = 5618.1886 kcal/mol (5612.4242 without restraints) Performing minimization step: 3606. Total energy = 5617.0038 kcal/mol (5611.2408 without restraints) Performing minimization step: 3607. Total energy = 5615.8205 kcal/mol (5610.0590 without restraints) Performing minimization step: 3608. Total energy = 5614.6386 kcal/mol (5608.8782 without restraints) Performing minimization step: 3609. Total energy = 5613.4574 kcal/mol (5607.6985 without restraints) Performing minimization step: 3610. Total energy = 5612.2773 kcal/mol (5606.5196 without restraints) Performing minimization step: 3611. Total energy = 5611.0979 kcal/mol (5605.3416 without restraints) Performing minimization step: 3612. Total energy = 5609.9198 kcal/mol (5604.1648 without restraints) Performing minimization step: 3613. Total energy = 5608.7429 kcal/mol (5602.9892 without restraints) Performing minimization step: 3614. Total energy = 5607.5669 kcal/mol (5601.8146 without restraints) Performing minimization step: 3615. Total energy = 5606.3921 kcal/mol (5600.6412 without restraints) Performing minimization step: 3616. Total energy = 5605.2185 kcal/mol (5599.4691 without restraints) Performing minimization step: 3617. Total energy = 5604.0459 kcal/mol (5598.2976 without restraints) Performing minimization step: 3618. Total energy = 5602.8739 kcal/mol (5597.1269 without restraints) Performing minimization step: 3619. Total energy = 5601.7035 kcal/mol (5595.9578 without restraints) Performing minimization step: 3620. Total energy = 5600.5342 kcal/mol (5594.7899 without restraints) Performing minimization step: 3621. Total energy = 5599.3655 kcal/mol (5593.6226 without restraints) Performing minimization step: 3622. Total energy = 5598.1980 kcal/mol (5592.4564 without restraints) Performing minimization step: 3623. Total energy = 5597.0319 kcal/mol (5591.2916 without restraints) Performing minimization step: 3624. Total energy = 5595.8667 kcal/mol (5590.1277 without restraints) Performing minimization step: 3625. Total energy = 5594.7024 kcal/mol (5588.9648 without restraints) Performing minimization step: 3626. Total energy = 5593.5392 kcal/mol (5587.8029 without restraints) Performing minimization step: 3627. Total energy = 5592.3776 kcal/mol (5586.6427 without restraints) Performing minimization step: 3628. Total energy = 5591.2164 kcal/mol (5585.4828 without restraints) Performing minimization step: 3629. Total energy = 5590.0565 kcal/mol (5584.3243 without restraints) Performing minimization step: 3630. Total energy = 5588.8976 kcal/mol (5583.1667 without restraints) Performing minimization step: 3631. Total energy = 5587.7398 kcal/mol (5582.0104 without restraints) Performing minimization step: 3632. Total energy = 5586.5829 kcal/mol (5580.8547 without restraints) Performing minimization step: 3633. Total energy = 5585.4269 kcal/mol (5579.7000 without restraints) Performing minimization step: 3634. Total energy = 5584.2722 kcal/mol (5578.5466 without restraints) Performing minimization step: 3635. Total energy = 5583.1185 kcal/mol (5577.3943 without restraints) Performing minimization step: 3636. Total energy = 5581.9657 kcal/mol (5576.2428 without restraints) Performing minimization step: 3637. Total energy = 5580.8146 kcal/mol (5575.0932 without restraints) Performing minimization step: 3638. Total energy = 5579.6639 kcal/mol (5573.9438 without restraints) Performing minimization step: 3639. Total energy = 5578.5144 kcal/mol (5572.7956 without restraints) Performing minimization step: 3640. Total energy = 5577.3658 kcal/mol (5571.6485 without restraints) Performing minimization step: 3641. Total energy = 5576.2181 kcal/mol (5570.5019 without restraints) Performing minimization step: 3642. Total energy = 5575.0717 kcal/mol (5569.3569 without restraints) Performing minimization step: 3643. Total energy = 5573.9258 kcal/mol (5568.2122 without restraints) Performing minimization step: 3644. Total energy = 5572.7812 kcal/mol (5567.0690 without restraints) Performing minimization step: 3645. Total energy = 5571.6378 kcal/mol (5565.9270 without restraints) Performing minimization step: 3646. Total energy = 5570.4953 kcal/mol (5564.7858 without restraints) Performing minimization step: 3647. Total energy = 5569.3537 kcal/mol (5563.6456 without restraints) Performing minimization step: 3648. Total energy = 5568.2136 kcal/mol (5562.5068 without restraints) Performing minimization step: 3649. Total energy = 5567.0739 kcal/mol (5561.3685 without restraints) Performing minimization step: 3650. Total energy = 5565.9353 kcal/mol (5560.2312 without restraints) Performing minimization step: 3651. Total energy = 5564.7977 kcal/mol (5559.0951 without restraints) Performing minimization step: 3652. Total energy = 5563.6615 kcal/mol (5557.9602 without restraints) Performing minimization step: 3653. Total energy = 5562.5265 kcal/mol (5556.8264 without restraints) Performing minimization step: 3654. Total energy = 5561.3920 kcal/mol (5555.6933 without restraints) Performing minimization step: 3655. Total energy = 5560.2588 kcal/mol (5554.5614 without restraints) Performing minimization step: 3656. Total energy = 5559.1264 kcal/mol (5553.4303 without restraints) Performing minimization step: 3657. Total energy = 5557.9953 kcal/mol (5552.3006 without restraints) Performing minimization step: 3658. Total energy = 5556.8648 kcal/mol (5551.1715 without restraints) Performing minimization step: 3659. Total energy = 5555.7354 kcal/mol (5550.0433 without restraints) Performing minimization step: 3660. Total energy = 5554.6073 kcal/mol (5548.9167 without restraints) Performing minimization step: 3661. Total energy = 5553.4805 kcal/mol (5547.7912 without restraints) Performing minimization step: 3662. Total energy = 5552.3548 kcal/mol (5546.6668 without restraints) Performing minimization step: 3663. Total energy = 5551.2293 kcal/mol (5545.5426 without restraints) Performing minimization step: 3664. Total energy = 5550.1048 kcal/mol (5544.4195 without restraints) Performing minimization step: 3665. Total energy = 5548.9819 kcal/mol (5543.2978 without restraints) Performing minimization step: 3666. Total energy = 5547.8595 kcal/mol (5542.1769 without restraints) Performing minimization step: 3667. Total energy = 5546.7382 kcal/mol (5541.0569 without restraints) Performing minimization step: 3668. Total energy = 5545.6178 kcal/mol (5539.9378 without restraints) Performing minimization step: 3669. Total energy = 5544.4982 kcal/mol (5538.8196 without restraints) Performing minimization step: 3670. Total energy = 5543.3801 kcal/mol (5537.7031 without restraints) Performing minimization step: 3671. Total energy = 5542.2629 kcal/mol (5536.5869 without restraints) Performing minimization step: 3672. Total energy = 5541.1467 kcal/mol (5535.4719 without restraints) Performing minimization step: 3673. Total energy = 5540.0310 kcal/mol (5534.3577 without restraints) Performing minimization step: 3674. Total energy = 5538.9164 kcal/mol (5533.2445 without restraints) Performing minimization step: 3675. Total energy = 5537.8030 kcal/mol (5532.1325 without restraints) Performing minimization step: 3676. Total energy = 5536.6906 kcal/mol (5531.0213 without restraints) Performing minimization step: 3677. Total energy = 5535.5789 kcal/mol (5529.9110 without restraints) Performing minimization step: 3678. Total energy = 5534.4682 kcal/mol (5528.8015 without restraints) Performing minimization step: 3679. Total energy = 5533.3584 kcal/mol (5527.6931 without restraints) Performing minimization step: 3680. Total energy = 5532.2496 kcal/mol (5526.5857 without restraints) Performing minimization step: 3681. Total energy = 5531.1423 kcal/mol (5525.4798 without restraints) Performing minimization step: 3682. Total energy = 5530.0361 kcal/mol (5524.3748 without restraints) Performing minimization step: 3683. Total energy = 5528.9301 kcal/mol (5523.2702 without restraints) Performing minimization step: 3684. Total energy = 5527.8254 kcal/mol (5522.1668 without restraints) Performing minimization step: 3685. Total energy = 5526.7217 kcal/mol (5521.0644 without restraints) Performing minimization step: 3686. Total energy = 5525.6191 kcal/mol (5519.9632 without restraints) Performing minimization step: 3687. Total energy = 5524.5171 kcal/mol (5518.8625 without restraints) Performing minimization step: 3688. Total energy = 5523.4161 kcal/mol (5517.7629 without restraints) Performing minimization step: 3689. Total energy = 5522.3159 kcal/mol (5516.6640 without restraints) Performing minimization step: 3690. Total energy = 5521.2168 kcal/mol (5515.5662 without restraints) Performing minimization step: 3691. Total energy = 5520.1186 kcal/mol (5514.4693 without restraints) Performing minimization step: 3692. Total energy = 5519.0214 kcal/mol (5513.3735 without restraints) Performing minimization step: 3693. Total energy = 5517.9252 kcal/mol (5512.2786 without restraints) Performing minimization step: 3694. Total energy = 5516.8300 kcal/mol (5511.1847 without restraints) Performing minimization step: 3695. Total energy = 5515.7357 kcal/mol (5510.0918 without restraints) Performing minimization step: 3696. Total energy = 5514.6425 kcal/mol (5508.9999 without restraints) Performing minimization step: 3697. Total energy = 5513.5500 kcal/mol (5507.9088 without restraints) Performing minimization step: 3698. Total energy = 5512.4586 kcal/mol (5506.8190 without restraints) Performing minimization step: 3699. Total energy = 5511.3684 kcal/mol (5505.7298 without restraints) Performing minimization step: 3700. Total energy = 5510.2789 kcal/mol (5504.6415 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 5509.1898 kcal/mol (5503.5539 without restraints) Performing minimization step: 3702. Total energy = 5508.1019 kcal/mol (5502.4673 without restraints) Performing minimization step: 3703. Total energy = 5507.0149 kcal/mol (5501.3816 without restraints) Performing minimization step: 3704. Total energy = 5505.9290 kcal/mol (5500.2971 without restraints) Performing minimization step: 3705. Total energy = 5504.8439 kcal/mol (5499.2133 without restraints) Performing minimization step: 3706. Total energy = 5503.7597 kcal/mol (5498.1305 without restraints) Performing minimization step: 3707. Total energy = 5502.6763 kcal/mol (5497.0484 without restraints) Performing minimization step: 3708. Total energy = 5501.5942 kcal/mol (5495.9676 without restraints) Performing minimization step: 3709. Total energy = 5500.5133 kcal/mol (5494.8880 without restraints) Performing minimization step: 3710. Total energy = 5499.4328 kcal/mol (5493.8088 without restraints) Performing minimization step: 3711. Total energy = 5498.3531 kcal/mol (5492.7305 without restraints) Performing minimization step: 3712. Total energy = 5497.2751 kcal/mol (5491.6542 without restraints) Performing minimization step: 3713. Total energy = 5496.1985 kcal/mol (5490.5784 without restraints) Performing minimization step: 3714. Total energy = 5495.1220 kcal/mol (5489.5035 without restraints) Performing minimization step: 3715. Total energy = 5494.0465 kcal/mol (5488.4295 without restraints) Performing minimization step: 3716. Total energy = 5492.9718 kcal/mol (5487.3557 without restraints) Performing minimization step: 3717. Total energy = 5491.8975 kcal/mol (5486.2829 without restraints) Performing minimization step: 3718. Total energy = 5490.8248 kcal/mol (5485.2115 without restraints) Performing minimization step: 3719. Total energy = 5489.7527 kcal/mol (5484.1407 without restraints) Performing minimization step: 3720. Total energy = 5488.6815 kcal/mol (5483.0710 without restraints) Performing minimization step: 3721. Total energy = 5487.6111 kcal/mol (5482.0018 without restraints) Performing minimization step: 3722. Total energy = 5486.5418 kcal/mol (5480.9339 without restraints) Performing minimization step: 3723. Total energy = 5485.4735 kcal/mol (5479.8669 without restraints) Performing minimization step: 3724. Total energy = 5484.4062 kcal/mol (5478.8009 without restraints) Performing minimization step: 3725. Total energy = 5483.3396 kcal/mol (5477.7357 without restraints) Performing minimization step: 3726. Total energy = 5482.2740 kcal/mol (5476.6714 without restraints) Performing minimization step: 3727. Total energy = 5481.2090 kcal/mol (5475.6078 without restraints) Performing minimization step: 3728. Total energy = 5480.1450 kcal/mol (5474.5451 without restraints) Performing minimization step: 3729. Total energy = 5479.0818 kcal/mol (5473.4832 without restraints) Performing minimization step: 3730. Total energy = 5478.0197 kcal/mol (5472.4225 without restraints) Performing minimization step: 3731. Total energy = 5476.9584 kcal/mol (5471.3626 without restraints) Performing minimization step: 3732. Total energy = 5475.8977 kcal/mol (5470.3030 without restraints) Performing minimization step: 3733. Total energy = 5474.8380 kcal/mol (5469.2447 without restraints) Performing minimization step: 3734. Total energy = 5473.7793 kcal/mol (5468.1873 without restraints) Performing minimization step: 3735. Total energy = 5472.7215 kcal/mol (5467.1309 without restraints) Performing minimization step: 3736. Total energy = 5471.6648 kcal/mol (5466.0755 without restraints) Performing minimization step: 3737. Total energy = 5470.6089 kcal/mol (5465.0209 without restraints) Performing minimization step: 3738. Total energy = 5469.5541 kcal/mol (5463.9676 without restraints) Performing minimization step: 3739. Total energy = 5468.5002 kcal/mol (5462.9150 without restraints) Performing minimization step: 3740. Total energy = 5467.4468 kcal/mol (5461.8629 without restraints) Performing minimization step: 3741. Total energy = 5466.3938 kcal/mol (5460.8112 without restraints) Performing minimization step: 3742. Total energy = 5465.3426 kcal/mol (5459.7613 without restraints) Performing minimization step: 3743. Total energy = 5464.2917 kcal/mol (5458.7118 without restraints) Performing minimization step: 3744. Total energy = 5463.2424 kcal/mol (5457.6638 without restraints) Performing minimization step: 3745. Total energy = 5462.1935 kcal/mol (5456.6161 without restraints) Performing minimization step: 3746. Total energy = 5461.1452 kcal/mol (5455.5693 without restraints) Performing minimization step: 3747. Total energy = 5460.0981 kcal/mol (5454.5235 without restraints) Performing minimization step: 3748. Total energy = 5459.0517 kcal/mol (5453.4784 without restraints) Performing minimization step: 3749. Total energy = 5458.0063 kcal/mol (5452.4343 without restraints) Performing minimization step: 3750. Total energy = 5456.9619 kcal/mol (5451.3913 without restraints) Performing minimization step: 3751. Total energy = 5455.9183 kcal/mol (5450.3490 without restraints) Performing minimization step: 3752. Total energy = 5454.8757 kcal/mol (5449.3078 without restraints) Performing minimization step: 3753. Total energy = 5453.8340 kcal/mol (5448.2673 without restraints) Performing minimization step: 3754. Total energy = 5452.7926 kcal/mol (5447.2273 without restraints) Performing minimization step: 3755. Total energy = 5451.7523 kcal/mol (5446.1883 without restraints) Performing minimization step: 3756. Total energy = 5450.7130 kcal/mol (5445.1503 without restraints) Performing minimization step: 3757. Total energy = 5449.6746 kcal/mol (5444.1133 without restraints) Performing minimization step: 3758. Total energy = 5448.6373 kcal/mol (5443.0773 without restraints) Performing minimization step: 3759. Total energy = 5447.6007 kcal/mol (5442.0420 without restraints) Performing minimization step: 3760. Total energy = 5446.5645 kcal/mol (5441.0070 without restraints) Performing minimization step: 3761. Total energy = 5445.5295 kcal/mol (5439.9736 without restraints) Performing minimization step: 3762. Total energy = 5444.4953 kcal/mol (5438.9406 without restraints) Performing minimization step: 3763. Total energy = 5443.4618 kcal/mol (5437.9084 without restraints) Performing minimization step: 3764. Total energy = 5442.4291 kcal/mol (5436.8770 without restraints) Performing minimization step: 3765. Total energy = 5441.3973 kcal/mol (5435.8466 without restraints) Performing minimization step: 3766. Total energy = 5440.3663 kcal/mol (5434.8169 without restraints) Performing minimization step: 3767. Total energy = 5439.3366 kcal/mol (5433.7886 without restraints) Performing minimization step: 3768. Total energy = 5438.3077 kcal/mol (5432.7612 without restraints) Performing minimization step: 3769. Total energy = 5437.2795 kcal/mol (5431.7341 without restraints) Performing minimization step: 3770. Total energy = 5436.2519 kcal/mol (5430.7078 without restraints) Performing minimization step: 3771. Total energy = 5435.2254 kcal/mol (5429.6827 without restraints) Performing minimization step: 3772. Total energy = 5434.1994 kcal/mol (5428.6580 without restraints) Performing minimization step: 3773. Total energy = 5433.1745 kcal/mol (5427.6344 without restraints) Performing minimization step: 3774. Total energy = 5432.1504 kcal/mol (5426.6117 without restraints) Performing minimization step: 3775. Total energy = 5431.1271 kcal/mol (5425.5897 without restraints) Performing minimization step: 3776. Total energy = 5430.1044 kcal/mol (5424.5682 without restraints) Performing minimization step: 3777. Total energy = 5429.0825 kcal/mol (5423.5478 without restraints) Performing minimization step: 3778. Total energy = 5428.0622 kcal/mol (5422.5287 without restraints) Performing minimization step: 3779. Total energy = 5427.0422 kcal/mol (5421.5100 without restraints) Performing minimization step: 3780. Total energy = 5426.0230 kcal/mol (5420.4922 without restraints) Performing minimization step: 3781. Total energy = 5425.0053 kcal/mol (5419.4760 without restraints) Performing minimization step: 3782. Total energy = 5423.9881 kcal/mol (5418.4600 without restraints) Performing minimization step: 3783. Total energy = 5422.9717 kcal/mol (5417.4449 without restraints) Performing minimization step: 3784. Total energy = 5421.9558 kcal/mol (5416.4302 without restraints) Performing minimization step: 3785. Total energy = 5420.9407 kcal/mol (5415.4165 without restraints) Performing minimization step: 3786. Total energy = 5419.9270 kcal/mol (5414.4041 without restraints) Performing minimization step: 3787. Total energy = 5418.9139 kcal/mol (5413.3923 without restraints) Performing minimization step: 3788. Total energy = 5417.9016 kcal/mol (5412.3815 without restraints) Performing minimization step: 3789. Total energy = 5416.8899 kcal/mol (5411.3711 without restraints) Performing minimization step: 3790. Total energy = 5415.8790 kcal/mol (5410.3615 without restraints) Performing minimization step: 3791. Total energy = 5414.8692 kcal/mol (5409.3530 without restraints) Performing minimization step: 3792. Total energy = 5413.8605 kcal/mol (5408.3456 without restraints) Performing minimization step: 3793. Total energy = 5412.8522 kcal/mol (5407.3387 without restraints) Performing minimization step: 3794. Total energy = 5411.8446 kcal/mol (5406.3324 without restraints) Performing minimization step: 3795. Total energy = 5410.8379 kcal/mol (5405.3270 without restraints) Performing minimization step: 3796. Total energy = 5409.8321 kcal/mol (5404.3225 without restraints) Performing minimization step: 3797. Total energy = 5408.8266 kcal/mol (5403.3184 without restraints) Performing minimization step: 3798. Total energy = 5407.8223 kcal/mol (5402.3154 without restraints) Performing minimization step: 3799. Total energy = 5406.8189 kcal/mol (5401.3133 without restraints) Performing minimization step: 3800. Total energy = 5405.8162 kcal/mol (5400.3120 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 5404.8144 kcal/mol (5399.3114 without restraints) Performing minimization step: 3802. Total energy = 5403.8135 kcal/mol (5398.3119 without restraints) Performing minimization step: 3803. Total energy = 5402.8134 kcal/mol (5397.3131 without restraints) Performing minimization step: 3804. Total energy = 5401.8139 kcal/mol (5396.3149 without restraints) Performing minimization step: 3805. Total energy = 5400.8150 kcal/mol (5395.3173 without restraints) Performing minimization step: 3806. Total energy = 5399.8177 kcal/mol (5394.3214 without restraints) Performing minimization step: 3807. Total energy = 5398.8210 kcal/mol (5393.3261 without restraints) Performing minimization step: 3808. Total energy = 5397.8248 kcal/mol (5392.3311 without restraints) Performing minimization step: 3809. Total energy = 5396.8293 kcal/mol (5391.3369 without restraints) Performing minimization step: 3810. Total energy = 5395.8344 kcal/mol (5390.3434 without restraints) Performing minimization step: 3811. Total energy = 5394.8406 kcal/mol (5389.3509 without restraints) Performing minimization step: 3812. Total energy = 5393.8477 kcal/mol (5388.3593 without restraints) Performing minimization step: 3813. Total energy = 5392.8557 kcal/mol (5387.3686 without restraints) Performing minimization step: 3814. Total energy = 5391.8639 kcal/mol (5386.3782 without restraints) Performing minimization step: 3815. Total energy = 5390.8732 kcal/mol (5385.3888 without restraints) Performing minimization step: 3816. Total energy = 5389.8837 kcal/mol (5384.4006 without restraints) Performing minimization step: 3817. Total energy = 5388.8945 kcal/mol (5383.4127 without restraints) Performing minimization step: 3818. Total energy = 5387.9066 kcal/mol (5382.4261 without restraints) Performing minimization step: 3819. Total energy = 5386.9195 kcal/mol (5381.4404 without restraints) Performing minimization step: 3820. Total energy = 5385.9330 kcal/mol (5380.4552 without restraints) Performing minimization step: 3821. Total energy = 5384.9472 kcal/mol (5379.4706 without restraints) Performing minimization step: 3822. Total energy = 5383.9620 kcal/mol (5378.4868 without restraints) Performing minimization step: 3823. Total energy = 5382.9774 kcal/mol (5377.5035 without restraints) Performing minimization step: 3824. Total energy = 5381.9941 kcal/mol (5376.5216 without restraints) Performing minimization step: 3825. Total energy = 5381.0112 kcal/mol (5375.5400 without restraints) Performing minimization step: 3826. Total energy = 5380.0294 kcal/mol (5374.5595 without restraints) Performing minimization step: 3827. Total energy = 5379.0477 kcal/mol (5373.5790 without restraints) Performing minimization step: 3828. Total energy = 5378.0673 kcal/mol (5372.6003 without restraints) Performing minimization step: 3829. Total energy = 5377.0880 kcal/mol (5371.6221 without restraints) Performing minimization step: 3830. Total energy = 5376.1095 kcal/mol (5370.6449 without restraints) Performing minimization step: 3831. Total energy = 5375.1317 kcal/mol (5369.6686 without restraints) Performing minimization step: 3832. Total energy = 5374.1547 kcal/mol (5368.6928 without restraints) Performing minimization step: 3833. Total energy = 5373.1783 kcal/mol (5367.7177 without restraints) Performing minimization step: 3834. Total energy = 5372.2032 kcal/mol (5366.7441 without restraints) Performing minimization step: 3835. Total energy = 5371.2284 kcal/mol (5365.7704 without restraints) Performing minimization step: 3836. Total energy = 5370.2548 kcal/mol (5364.7982 without restraints) Performing minimization step: 3837. Total energy = 5369.2820 kcal/mol (5363.8266 without restraints) Performing minimization step: 3838. Total energy = 5368.3095 kcal/mol (5362.8555 without restraints) Performing minimization step: 3839. Total energy = 5367.3376 kcal/mol (5361.8849 without restraints) Performing minimization step: 3840. Total energy = 5366.3671 kcal/mol (5360.9157 without restraints) Performing minimization step: 3841. Total energy = 5365.3971 kcal/mol (5359.9470 without restraints) Performing minimization step: 3842. Total energy = 5364.4274 kcal/mol (5358.9786 without restraints) Performing minimization step: 3843. Total energy = 5363.4589 kcal/mol (5358.0114 without restraints) Performing minimization step: 3844. Total energy = 5362.4909 kcal/mol (5357.0447 without restraints) Performing minimization step: 3845. Total energy = 5361.5235 kcal/mol (5356.0787 without restraints) Performing minimization step: 3846. Total energy = 5360.5570 kcal/mol (5355.1135 without restraints) Performing minimization step: 3847. Total energy = 5359.5915 kcal/mol (5354.1494 without restraints) Performing minimization step: 3848. Total energy = 5358.6270 kcal/mol (5353.1861 without restraints) Performing minimization step: 3849. Total energy = 5357.6631 kcal/mol (5352.2236 without restraints) Performing minimization step: 3850. Total energy = 5356.6999 kcal/mol (5351.2617 without restraints) Performing minimization step: 3851. Total energy = 5355.7373 kcal/mol (5350.3004 without restraints) Performing minimization step: 3852. Total energy = 5354.7756 kcal/mol (5349.3400 without restraints) Performing minimization step: 3853. Total energy = 5353.8143 kcal/mol (5348.3800 without restraints) Performing minimization step: 3854. Total energy = 5352.8537 kcal/mol (5347.4208 without restraints) Performing minimization step: 3855. Total energy = 5351.8938 kcal/mol (5346.4621 without restraints) Performing minimization step: 3856. Total energy = 5350.9348 kcal/mol (5345.5045 without restraints) Performing minimization step: 3857. Total energy = 5349.9765 kcal/mol (5344.5475 without restraints) Performing minimization step: 3858. Total energy = 5349.0196 kcal/mol (5343.5920 without restraints) Performing minimization step: 3859. Total energy = 5348.0631 kcal/mol (5342.6369 without restraints) Performing minimization step: 3860. Total energy = 5347.1074 kcal/mol (5341.6824 without restraints) Performing minimization step: 3861. Total energy = 5346.1520 kcal/mol (5340.7283 without restraints) Performing minimization step: 3862. Total energy = 5345.1975 kcal/mol (5339.7751 without restraints) Performing minimization step: 3863. Total energy = 5344.2439 kcal/mol (5338.8229 without restraints) Performing minimization step: 3864. Total energy = 5343.2911 kcal/mol (5337.8714 without restraints) Performing minimization step: 3865. Total energy = 5342.3391 kcal/mol (5336.9206 without restraints) Performing minimization step: 3866. Total energy = 5341.3874 kcal/mol (5335.9703 without restraints) Performing minimization step: 3867. Total energy = 5340.4368 kcal/mol (5335.0210 without restraints) Performing minimization step: 3868. Total energy = 5339.4866 kcal/mol (5334.0722 without restraints) Performing minimization step: 3869. Total energy = 5338.5377 kcal/mol (5333.1245 without restraints) Performing minimization step: 3870. Total energy = 5337.5891 kcal/mol (5332.1772 without restraints) Performing minimization step: 3871. Total energy = 5336.6412 kcal/mol (5331.2308 without restraints) Performing minimization step: 3872. Total energy = 5335.6942 kcal/mol (5330.2849 without restraints) Performing minimization step: 3873. Total energy = 5334.7478 kcal/mol (5329.3399 without restraints) Performing minimization step: 3874. Total energy = 5333.8021 kcal/mol (5328.3956 without restraints) Performing minimization step: 3875. Total energy = 5332.8575 kcal/mol (5327.4522 without restraints) Performing minimization step: 3876. Total energy = 5331.9135 kcal/mol (5326.5095 without restraints) Performing minimization step: 3877. Total energy = 5330.9701 kcal/mol (5325.5676 without restraints) Performing minimization step: 3878. Total energy = 5330.0276 kcal/mol (5324.6263 without restraints) Performing minimization step: 3879. Total energy = 5329.0866 kcal/mol (5323.6867 without restraints) Performing minimization step: 3880. Total energy = 5328.1456 kcal/mol (5322.7469 without restraints) Performing minimization step: 3881. Total energy = 5327.2052 kcal/mol (5321.8078 without restraints) Performing minimization step: 3882. Total energy = 5326.2660 kcal/mol (5320.8700 without restraints) Performing minimization step: 3883. Total energy = 5325.3269 kcal/mol (5319.9321 without restraints) Performing minimization step: 3884. Total energy = 5324.3887 kcal/mol (5318.9954 without restraints) Performing minimization step: 3885. Total energy = 5323.4516 kcal/mol (5318.0594 without restraints) Performing minimization step: 3886. Total energy = 5322.5146 kcal/mol (5317.1238 without restraints) Performing minimization step: 3887. Total energy = 5321.5784 kcal/mol (5316.1888 without restraints) Performing minimization step: 3888. Total energy = 5320.6430 kcal/mol (5315.2549 without restraints) Performing minimization step: 3889. Total energy = 5319.7093 kcal/mol (5314.3224 without restraints) Performing minimization step: 3890. Total energy = 5318.7754 kcal/mol (5313.3900 without restraints) Performing minimization step: 3891. Total energy = 5317.8423 kcal/mol (5312.4581 without restraints) Performing minimization step: 3892. Total energy = 5316.9098 kcal/mol (5311.5268 without restraints) Performing minimization step: 3893. Total energy = 5315.9777 kcal/mol (5310.5961 without restraints) Performing minimization step: 3894. Total energy = 5315.0468 kcal/mol (5309.6666 without restraints) Performing minimization step: 3895. Total energy = 5314.1167 kcal/mol (5308.7377 without restraints) Performing minimization step: 3896. Total energy = 5313.1873 kcal/mol (5307.8096 without restraints) Performing minimization step: 3897. Total energy = 5312.2580 kcal/mol (5306.8816 without restraints) Performing minimization step: 3898. Total energy = 5311.3296 kcal/mol (5305.9545 without restraints) Performing minimization step: 3899. Total energy = 5310.4024 kcal/mol (5305.0286 without restraints) Performing minimization step: 3900. Total energy = 5309.4755 kcal/mol (5304.1030 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 5308.5491 kcal/mol (5303.1779 without restraints) Performing minimization step: 3902. Total energy = 5307.6237 kcal/mol (5302.2539 without restraints) Performing minimization step: 3903. Total energy = 5306.6989 kcal/mol (5301.3304 without restraints) Performing minimization step: 3904. Total energy = 5305.7750 kcal/mol (5300.4077 without restraints) Performing minimization step: 3905. Total energy = 5304.8516 kcal/mol (5299.4857 without restraints) Performing minimization step: 3906. Total energy = 5303.9290 kcal/mol (5298.5644 without restraints) Performing minimization step: 3907. Total energy = 5303.0069 kcal/mol (5297.6436 without restraints) Performing minimization step: 3908. Total energy = 5302.0857 kcal/mol (5296.7237 without restraints) Performing minimization step: 3909. Total energy = 5301.1654 kcal/mol (5295.8048 without restraints) Performing minimization step: 3910. Total energy = 5300.2457 kcal/mol (5294.8864 without restraints) Performing minimization step: 3911. Total energy = 5299.3269 kcal/mol (5293.9690 without restraints) Performing minimization step: 3912. Total energy = 5298.4088 kcal/mol (5293.0522 without restraints) Performing minimization step: 3913. Total energy = 5297.4912 kcal/mol (5292.1358 without restraints) Performing minimization step: 3914. Total energy = 5296.5742 kcal/mol (5291.2201 without restraints) Performing minimization step: 3915. Total energy = 5295.6577 kcal/mol (5290.3049 without restraints) Performing minimization step: 3916. Total energy = 5294.7420 kcal/mol (5289.3906 without restraints) Performing minimization step: 3917. Total energy = 5293.8270 kcal/mol (5288.4769 without restraints) Performing minimization step: 3918. Total energy = 5292.9132 kcal/mol (5287.5643 without restraints) Performing minimization step: 3919. Total energy = 5291.9997 kcal/mol (5286.6521 without restraints) Performing minimization step: 3920. Total energy = 5291.0864 kcal/mol (5285.7402 without restraints) Performing minimization step: 3921. Total energy = 5290.1748 kcal/mol (5284.8299 without restraints) Performing minimization step: 3922. Total energy = 5289.2636 kcal/mol (5283.9200 without restraints) Performing minimization step: 3923. Total energy = 5288.3528 kcal/mol (5283.0105 without restraints) Performing minimization step: 3924. Total energy = 5287.4427 kcal/mol (5282.1017 without restraints) Performing minimization step: 3925. Total energy = 5286.5338 kcal/mol (5281.1943 without restraints) Performing minimization step: 3926. Total energy = 5285.6254 kcal/mol (5280.2871 without restraints) Performing minimization step: 3927. Total energy = 5284.7180 kcal/mol (5279.3809 without restraints) Performing minimization step: 3928. Total energy = 5283.8108 kcal/mol (5278.4751 without restraints) Performing minimization step: 3929. Total energy = 5282.9043 kcal/mol (5277.5698 without restraints) Performing minimization step: 3930. Total energy = 5281.9987 kcal/mol (5276.6656 without restraints) Performing minimization step: 3931. Total energy = 5281.0939 kcal/mol (5275.7621 without restraints) Performing minimization step: 3932. Total energy = 5280.1891 kcal/mol (5274.8586 without restraints) Performing minimization step: 3933. Total energy = 5279.2855 kcal/mol (5273.9563 without restraints) Performing minimization step: 3934. Total energy = 5278.3825 kcal/mol (5273.0546 without restraints) Performing minimization step: 3935. Total energy = 5277.4807 kcal/mol (5272.1542 without restraints) Performing minimization step: 3936. Total energy = 5276.5792 kcal/mol (5271.2542 without restraints) Performing minimization step: 3937. Total energy = 5275.6785 kcal/mol (5270.3545 without restraints) Performing minimization step: 3938. Total energy = 5274.7784 kcal/mol (5269.4558 without restraints) Performing minimization step: 3939. Total energy = 5273.8787 kcal/mol (5268.5574 without restraints) Performing minimization step: 3940. Total energy = 5272.9803 kcal/mol (5267.6603 without restraints) Performing minimization step: 3941. Total energy = 5272.0816 kcal/mol (5266.7629 without restraints) Performing minimization step: 3942. Total energy = 5271.1847 kcal/mol (5265.8672 without restraints) Performing minimization step: 3943. Total energy = 5270.2878 kcal/mol (5264.9717 without restraints) Performing minimization step: 3944. Total energy = 5269.3914 kcal/mol (5264.0766 without restraints) Performing minimization step: 3945. Total energy = 5268.4960 kcal/mol (5263.1824 without restraints) Performing minimization step: 3946. Total energy = 5267.6010 kcal/mol (5262.2888 without restraints) Performing minimization step: 3947. Total energy = 5266.7065 kcal/mol (5261.3956 without restraints) Performing minimization step: 3948. Total energy = 5265.8130 kcal/mol (5260.5034 without restraints) Performing minimization step: 3949. Total energy = 5264.9202 kcal/mol (5259.6119 without restraints) Performing minimization step: 3950. Total energy = 5264.0280 kcal/mol (5258.7210 without restraints) Performing minimization step: 3951. Total energy = 5263.1365 kcal/mol (5257.8308 without restraints) Performing minimization step: 3952. Total energy = 5262.2454 kcal/mol (5256.9411 without restraints) Performing minimization step: 3953. Total energy = 5261.3554 kcal/mol (5256.0524 without restraints) Performing minimization step: 3954. Total energy = 5260.4658 kcal/mol (5255.1640 without restraints) Performing minimization step: 3955. Total energy = 5259.5770 kcal/mol (5254.2765 without restraints) Performing minimization step: 3956. Total energy = 5258.6883 kcal/mol (5253.3891 without restraints) Performing minimization step: 3957. Total energy = 5257.8009 kcal/mol (5252.5030 without restraints) Performing minimization step: 3958. Total energy = 5256.9141 kcal/mol (5251.6175 without restraints) Performing minimization step: 3959. Total energy = 5256.0281 kcal/mol (5250.7328 without restraints) Performing minimization step: 3960. Total energy = 5255.1427 kcal/mol (5249.8489 without restraints) Performing minimization step: 3961. Total energy = 5254.2581 kcal/mol (5248.9655 without restraints) Performing minimization step: 3962. Total energy = 5253.3738 kcal/mol (5248.0824 without restraints) Performing minimization step: 3963. Total energy = 5252.4906 kcal/mol (5247.2007 without restraints) Performing minimization step: 3964. Total energy = 5251.6077 kcal/mol (5246.3190 without restraints) Performing minimization step: 3965. Total energy = 5250.7260 kcal/mol (5245.4385 without restraints) Performing minimization step: 3966. Total energy = 5249.8442 kcal/mol (5244.5581 without restraints) Performing minimization step: 3967. Total energy = 5248.9632 kcal/mol (5243.6784 without restraints) Performing minimization step: 3968. Total energy = 5248.0828 kcal/mol (5242.7993 without restraints) Performing minimization step: 3969. Total energy = 5247.2030 kcal/mol (5241.9208 without restraints) Performing minimization step: 3970. Total energy = 5246.3239 kcal/mol (5241.0430 without restraints) Performing minimization step: 3971. Total energy = 5245.4454 kcal/mol (5240.1658 without restraints) Performing minimization step: 3972. Total energy = 5244.5677 kcal/mol (5239.2894 without restraints) Performing minimization step: 3973. Total energy = 5243.6905 kcal/mol (5238.4136 without restraints) Performing minimization step: 3974. Total energy = 5242.8142 kcal/mol (5237.5387 without restraints) Performing minimization step: 3975. Total energy = 5241.9386 kcal/mol (5236.6642 without restraints) Performing minimization step: 3976. Total energy = 5241.0636 kcal/mol (5235.7905 without restraints) Performing minimization step: 3977. Total energy = 5240.1894 kcal/mol (5234.9176 without restraints) Performing minimization step: 3978. Total energy = 5239.3158 kcal/mol (5234.0453 without restraints) Performing minimization step: 3979. Total energy = 5238.4427 kcal/mol (5233.1736 without restraints) Performing minimization step: 3980. Total energy = 5237.5701 kcal/mol (5232.3023 without restraints) Performing minimization step: 3981. Total energy = 5236.6980 kcal/mol (5231.4315 without restraints) Performing minimization step: 3982. Total energy = 5235.8271 kcal/mol (5230.5618 without restraints) Performing minimization step: 3983. Total energy = 5234.9566 kcal/mol (5229.6926 without restraints) Performing minimization step: 3984. Total energy = 5234.0869 kcal/mol (5228.8243 without restraints) Performing minimization step: 3985. Total energy = 5233.2175 kcal/mol (5227.9561 without restraints) Performing minimization step: 3986. Total energy = 5232.3489 kcal/mol (5227.0889 without restraints) Performing minimization step: 3987. Total energy = 5231.4810 kcal/mol (5226.2223 without restraints) Performing minimization step: 3988. Total energy = 5230.6137 kcal/mol (5225.3563 without restraints) Performing minimization step: 3989. Total energy = 5229.7477 kcal/mol (5224.4915 without restraints) Performing minimization step: 3990. Total energy = 5228.8813 kcal/mol (5223.6265 without restraints) Performing minimization step: 3991. Total energy = 5228.0160 kcal/mol (5222.7625 without restraints) Performing minimization step: 3992. Total energy = 5227.1514 kcal/mol (5221.8992 without restraints) Performing minimization step: 3993. Total energy = 5226.2874 kcal/mol (5221.0364 without restraints) Performing minimization step: 3994. Total energy = 5225.4243 kcal/mol (5220.1747 without restraints) Performing minimization step: 3995. Total energy = 5224.5614 kcal/mol (5219.3130 without restraints) Performing minimization step: 3996. Total energy = 5223.6989 kcal/mol (5218.4518 without restraints) Performing minimization step: 3997. Total energy = 5222.8372 kcal/mol (5217.5914 without restraints) Performing minimization step: 3998. Total energy = 5221.9761 kcal/mol (5216.7316 without restraints) Performing minimization step: 3999. Total energy = 5221.1157 kcal/mol (5215.8725 without restraints) Performing minimization step: 4000. Total energy = 5220.2559 kcal/mol (5215.0141 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 5219.3970 kcal/mol (5214.1564 without restraints) Performing minimization step: 4002. Total energy = 5218.5387 kcal/mol (5213.2994 without restraints) Performing minimization step: 4003. Total energy = 5217.6812 kcal/mol (5212.4433 without restraints) Performing minimization step: 4004. Total energy = 5216.8242 kcal/mol (5211.5875 without restraints) Performing minimization step: 4005. Total energy = 5215.9679 kcal/mol (5210.7327 without restraints) Performing minimization step: 4006. Total energy = 5215.1121 kcal/mol (5209.8782 without restraints) Performing minimization step: 4007. Total energy = 5214.2572 kcal/mol (5209.0244 without restraints) Performing minimization step: 4008. Total energy = 5213.4024 kcal/mol (5208.1709 without restraints) Performing minimization step: 4009. Total energy = 5212.5485 kcal/mol (5207.3184 without restraints) Performing minimization step: 4010. Total energy = 5211.6958 kcal/mol (5206.4671 without restraints) Performing minimization step: 4011. Total energy = 5210.8433 kcal/mol (5205.6158 without restraints) Performing minimization step: 4012. Total energy = 5209.9912 kcal/mol (5204.7649 without restraints) Performing minimization step: 4013. Total energy = 5209.1396 kcal/mol (5203.9146 without restraints) Performing minimization step: 4014. Total energy = 5208.2886 kcal/mol (5203.0650 without restraints) Performing minimization step: 4015. Total energy = 5207.4386 kcal/mol (5202.2162 without restraints) Performing minimization step: 4016. Total energy = 5206.5889 kcal/mol (5201.3678 without restraints) Performing minimization step: 4017. Total energy = 5205.7401 kcal/mol (5200.5207 without restraints) Performing minimization step: 4018. Total energy = 5204.8922 kcal/mol (5199.6738 without restraints) Performing minimization step: 4019. Total energy = 5204.0445 kcal/mol (5198.8274 without restraints) Performing minimization step: 4020. Total energy = 5203.1977 kcal/mol (5197.9820 without restraints) Performing minimization step: 4021. Total energy = 5202.3514 kcal/mol (5197.1369 without restraints) Performing minimization step: 4022. Total energy = 5201.5057 kcal/mol (5196.2922 without restraints) Performing minimization step: 4023. Total energy = 5200.6603 kcal/mol (5195.4482 without restraints) Performing minimization step: 4024. Total energy = 5199.8156 kcal/mol (5194.6048 without restraints) Performing minimization step: 4025. Total energy = 5198.9720 kcal/mol (5193.7625 without restraints) Performing minimization step: 4026. Total energy = 5198.1286 kcal/mol (5192.9205 without restraints) Performing minimization step: 4027. Total energy = 5197.2857 kcal/mol (5192.0789 without restraints) Performing minimization step: 4028. Total energy = 5196.4437 kcal/mol (5191.2382 without restraints) Performing minimization step: 4029. Total energy = 5195.6022 kcal/mol (5190.3980 without restraints) Performing minimization step: 4030. Total energy = 5194.7613 kcal/mol (5189.5583 without restraints) Performing minimization step: 4031. Total energy = 5193.9210 kcal/mol (5188.7194 without restraints) Performing minimization step: 4032. Total energy = 5193.0815 kcal/mol (5187.8811 without restraints) Performing minimization step: 4033. Total energy = 5192.2424 kcal/mol (5187.0434 without restraints) Performing minimization step: 4034. Total energy = 5191.4039 kcal/mol (5186.2063 without restraints) Performing minimization step: 4035. Total energy = 5190.5660 kcal/mol (5185.3695 without restraints) Performing minimization step: 4036. Total energy = 5189.7288 kcal/mol (5184.5337 without restraints) Performing minimization step: 4037. Total energy = 5188.8923 kcal/mol (5183.6983 without restraints) Performing minimization step: 4038. Total energy = 5188.0560 kcal/mol (5182.8634 without restraints) Performing minimization step: 4039. Total energy = 5187.2206 kcal/mol (5182.0293 without restraints) Performing minimization step: 4040. Total energy = 5186.3857 kcal/mol (5181.1959 without restraints) Performing minimization step: 4041. Total energy = 5185.5515 kcal/mol (5180.3628 without restraints) Performing minimization step: 4042. Total energy = 5184.7178 kcal/mol (5179.5304 without restraints) Performing minimization step: 4043. Total energy = 5183.8846 kcal/mol (5178.6985 without restraints) Performing minimization step: 4044. Total energy = 5183.0522 kcal/mol (5177.8675 without restraints) Performing minimization step: 4045. Total energy = 5182.2204 kcal/mol (5177.0369 without restraints) Performing minimization step: 4046. Total energy = 5181.3889 kcal/mol (5176.2067 without restraints) Performing minimization step: 4047. Total energy = 5180.5582 kcal/mol (5175.3772 without restraints) Performing minimization step: 4048. Total energy = 5179.7278 kcal/mol (5174.5481 without restraints) Performing minimization step: 4049. Total energy = 5178.8987 kcal/mol (5173.7204 without restraints) Performing minimization step: 4050. Total energy = 5178.0702 kcal/mol (5172.8932 without restraints) Performing minimization step: 4051. Total energy = 5177.2420 kcal/mol (5172.0661 without restraints) Performing minimization step: 4052. Total energy = 5176.4142 kcal/mol (5171.2397 without restraints) Performing minimization step: 4053. Total energy = 5175.5872 kcal/mol (5170.4142 without restraints) Performing minimization step: 4054. Total energy = 5174.7609 kcal/mol (5169.5891 without restraints) Performing minimization step: 4055. Total energy = 5173.9349 kcal/mol (5168.7643 without restraints) Performing minimization step: 4056. Total energy = 5173.1096 kcal/mol (5167.9403 without restraints) Performing minimization step: 4057. Total energy = 5172.2852 kcal/mol (5167.1172 without restraints) Performing minimization step: 4058. Total energy = 5171.4619 kcal/mol (5166.2953 without restraints) Performing minimization step: 4059. Total energy = 5170.6385 kcal/mol (5165.4730 without restraints) Performing minimization step: 4060. Total energy = 5169.8156 kcal/mol (5164.6514 without restraints) Performing minimization step: 4061. Total energy = 5168.9935 kcal/mol (5163.8307 without restraints) Performing minimization step: 4062. Total energy = 5168.1719 kcal/mol (5163.0103 without restraints) Performing minimization step: 4063. Total energy = 5167.3507 kcal/mol (5162.1905 without restraints) Performing minimization step: 4064. Total energy = 5166.5304 kcal/mol (5161.3715 without restraints) Performing minimization step: 4065. Total energy = 5165.7108 kcal/mol (5160.5532 without restraints) Performing minimization step: 4066. Total energy = 5164.8921 kcal/mol (5159.7357 without restraints) Performing minimization step: 4067. Total energy = 5164.0733 kcal/mol (5158.9182 without restraints) Performing minimization step: 4068. Total energy = 5163.2550 kcal/mol (5158.1012 without restraints) Performing minimization step: 4069. Total energy = 5162.4377 kcal/mol (5157.2853 without restraints) Performing minimization step: 4070. Total energy = 5161.6215 kcal/mol (5156.4703 without restraints) Performing minimization step: 4071. Total energy = 5160.8051 kcal/mol (5155.6552 without restraints) Performing minimization step: 4072. Total energy = 5159.9891 kcal/mol (5154.8404 without restraints) Performing minimization step: 4073. Total energy = 5159.1738 kcal/mol (5154.0265 without restraints) Performing minimization step: 4074. Total energy = 5158.3592 kcal/mol (5153.2131 without restraints) Performing minimization step: 4075. Total energy = 5157.5451 kcal/mol (5152.4003 without restraints) Performing minimization step: 4076. Total energy = 5156.7315 kcal/mol (5151.5881 without restraints) Performing minimization step: 4077. Total energy = 5155.9184 kcal/mol (5150.7763 without restraints) Performing minimization step: 4078. Total energy = 5155.1064 kcal/mol (5149.9655 without restraints) Performing minimization step: 4079. Total energy = 5154.2948 kcal/mol (5149.1552 without restraints) Performing minimization step: 4080. Total energy = 5153.4838 kcal/mol (5148.3456 without restraints) Performing minimization step: 4081. Total energy = 5152.6738 kcal/mol (5147.5367 without restraints) Performing minimization step: 4082. Total energy = 5151.8643 kcal/mol (5146.7286 without restraints) Performing minimization step: 4083. Total energy = 5151.0551 kcal/mol (5145.9207 without restraints) Performing minimization step: 4084. Total energy = 5150.2462 kcal/mol (5145.1131 without restraints) Performing minimization step: 4085. Total energy = 5149.4382 kcal/mol (5144.3063 without restraints) Performing minimization step: 4086. Total energy = 5148.6309 kcal/mol (5143.5005 without restraints) Performing minimization step: 4087. Total energy = 5147.8238 kcal/mol (5142.6945 without restraints) Performing minimization step: 4088. Total energy = 5147.0173 kcal/mol (5141.8893 without restraints) Performing minimization step: 4089. Total energy = 5146.2119 kcal/mol (5141.0852 without restraints) Performing minimization step: 4090. Total energy = 5145.4063 kcal/mol (5140.2809 without restraints) Performing minimization step: 4091. Total energy = 5144.6019 kcal/mol (5139.4778 without restraints) Performing minimization step: 4092. Total energy = 5143.7978 kcal/mol (5138.6749 without restraints) Performing minimization step: 4093. Total energy = 5142.9941 kcal/mol (5137.8726 without restraints) Performing minimization step: 4094. Total energy = 5142.1915 kcal/mol (5137.0714 without restraints) Performing minimization step: 4095. Total energy = 5141.3895 kcal/mol (5136.2705 without restraints) Performing minimization step: 4096. Total energy = 5140.5878 kcal/mol (5135.4701 without restraints) Performing minimization step: 4097. Total energy = 5139.7864 kcal/mol (5134.6700 without restraints) Performing minimization step: 4098. Total energy = 5138.9859 kcal/mol (5133.8707 without restraints) Performing minimization step: 4099. Total energy = 5138.1864 kcal/mol (5133.0725 without restraints) Performing minimization step: 4100. Total energy = 5137.3867 kcal/mol (5132.2742 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 5136.5880 kcal/mol (5131.4768 without restraints) Performing minimization step: 4102. Total energy = 5135.7896 kcal/mol (5130.6796 without restraints) Performing minimization step: 4103. Total energy = 5134.9915 kcal/mol (5129.8828 without restraints) Performing minimization step: 4104. Total energy = 5134.1944 kcal/mol (5129.0870 without restraints) Performing minimization step: 4105. Total energy = 5133.3977 kcal/mol (5128.2917 without restraints) Performing minimization step: 4106. Total energy = 5132.6014 kcal/mol (5127.4965 without restraints) Performing minimization step: 4107. Total energy = 5131.8057 kcal/mol (5126.7022 without restraints) Performing minimization step: 4108. Total energy = 5131.0109 kcal/mol (5125.9086 without restraints) Performing minimization step: 4109. Total energy = 5130.2165 kcal/mol (5125.1156 without restraints) Performing minimization step: 4110. Total energy = 5129.4226 kcal/mol (5124.3229 without restraints) Performing minimization step: 4111. Total energy = 5128.6297 kcal/mol (5123.5315 without restraints) Performing minimization step: 4112. Total energy = 5127.8377 kcal/mol (5122.7406 without restraints) Performing minimization step: 4113. Total energy = 5127.0455 kcal/mol (5121.9497 without restraints) Performing minimization step: 4114. Total energy = 5126.2539 kcal/mol (5121.1594 without restraints) Performing minimization step: 4115. Total energy = 5125.4628 kcal/mol (5120.3695 without restraints) Performing minimization step: 4116. Total energy = 5124.6723 kcal/mol (5119.5803 without restraints) Performing minimization step: 4117. Total energy = 5123.8824 kcal/mol (5118.7918 without restraints) Performing minimization step: 4118. Total energy = 5123.0930 kcal/mol (5118.0036 without restraints) Performing minimization step: 4119. Total energy = 5122.3042 kcal/mol (5117.2161 without restraints) Performing minimization step: 4120. Total energy = 5121.5160 kcal/mol (5116.4291 without restraints) Performing minimization step: 4121. Total energy = 5120.7286 kcal/mol (5115.6431 without restraints) Performing minimization step: 4122. Total energy = 5119.9414 kcal/mol (5114.8572 without restraints) Performing minimization step: 4123. Total energy = 5119.1550 kcal/mol (5114.0721 without restraints) Performing minimization step: 4124. Total energy = 5118.3693 kcal/mol (5113.2876 without restraints) Performing minimization step: 4125. Total energy = 5117.5842 kcal/mol (5112.5039 without restraints) Performing minimization step: 4126. Total energy = 5116.7994 kcal/mol (5111.7203 without restraints) Performing minimization step: 4127. Total energy = 5116.0161 kcal/mol (5110.9383 without restraints) Performing minimization step: 4128. Total energy = 5115.2327 kcal/mol (5110.1561 without restraints) Performing minimization step: 4129. Total energy = 5114.4494 kcal/mol (5109.3741 without restraints) Performing minimization step: 4130. Total energy = 5113.6670 kcal/mol (5108.5931 without restraints) Performing minimization step: 4131. Total energy = 5112.8849 kcal/mol (5107.8123 without restraints) Performing minimization step: 4132. Total energy = 5112.1033 kcal/mol (5107.0319 without restraints) Performing minimization step: 4133. Total energy = 5111.3223 kcal/mol (5106.2522 without restraints) Performing minimization step: 4134. Total energy = 5110.5418 kcal/mol (5105.4729 without restraints) Performing minimization step: 4135. Total energy = 5109.7618 kcal/mol (5104.6942 without restraints) Performing minimization step: 4136. Total energy = 5108.9826 kcal/mol (5103.9163 without restraints) Performing minimization step: 4137. Total energy = 5108.2039 kcal/mol (5103.1389 without restraints) Performing minimization step: 4138. Total energy = 5107.4259 kcal/mol (5102.3623 without restraints) Performing minimization step: 4139. Total energy = 5106.6487 kcal/mol (5101.5862 without restraints) Performing minimization step: 4140. Total energy = 5105.8717 kcal/mol (5100.8107 without restraints) Performing minimization step: 4141. Total energy = 5105.0955 kcal/mol (5100.0358 without restraints) Performing minimization step: 4142. Total energy = 5104.3198 kcal/mol (5099.2612 without restraints) Performing minimization step: 4143. Total energy = 5103.5445 kcal/mol (5098.4871 without restraints) Performing minimization step: 4144. Total energy = 5102.7692 kcal/mol (5097.7131 without restraints) Performing minimization step: 4145. Total energy = 5101.9946 kcal/mol (5096.9398 without restraints) Performing minimization step: 4146. Total energy = 5101.2213 kcal/mol (5096.1677 without restraints) Performing minimization step: 4147. Total energy = 5100.4477 kcal/mol (5095.3954 without restraints) Performing minimization step: 4148. Total energy = 5099.6748 kcal/mol (5094.6239 without restraints) Performing minimization step: 4149. Total energy = 5098.9026 kcal/mol (5093.8528 without restraints) Performing minimization step: 4150. Total energy = 5098.1308 kcal/mol (5093.0825 without restraints) Performing minimization step: 4151. Total energy = 5097.3597 kcal/mol (5092.3127 without restraints) Performing minimization step: 4152. Total energy = 5096.5894 kcal/mol (5091.5436 without restraints) Performing minimization step: 4153. Total energy = 5095.8195 kcal/mol (5090.7749 without restraints) Performing minimization step: 4154. Total energy = 5095.0507 kcal/mol (5090.0075 without restraints) Performing minimization step: 4155. Total energy = 5094.2821 kcal/mol (5089.2403 without restraints) Performing minimization step: 4156. Total energy = 5093.5140 kcal/mol (5088.4735 without restraints) Performing minimization step: 4157. Total energy = 5092.7465 kcal/mol (5087.7073 without restraints) Performing minimization step: 4158. Total energy = 5091.9795 kcal/mol (5086.9414 without restraints) Performing minimization step: 4159. Total energy = 5091.2126 kcal/mol (5086.1758 without restraints) Performing minimization step: 4160. Total energy = 5090.4466 kcal/mol (5085.4111 without restraints) Performing minimization step: 4161. Total energy = 5089.6814 kcal/mol (5084.6471 without restraints) Performing minimization step: 4162. Total energy = 5088.9163 kcal/mol (5083.8833 without restraints) Performing minimization step: 4163. Total energy = 5088.1516 kcal/mol (5083.1198 without restraints) Performing minimization step: 4164. Total energy = 5087.3876 kcal/mol (5082.3571 without restraints) Performing minimization step: 4165. Total energy = 5086.6239 kcal/mol (5081.5948 without restraints) Performing minimization step: 4166. Total energy = 5085.8613 kcal/mol (5080.8334 without restraints) Performing minimization step: 4167. Total energy = 5085.0987 kcal/mol (5080.0721 without restraints) Performing minimization step: 4168. Total energy = 5084.3375 kcal/mol (5079.3123 without restraints) Performing minimization step: 4169. Total energy = 5083.5757 kcal/mol (5078.5516 without restraints) Performing minimization step: 4170. Total energy = 5082.8150 kcal/mol (5077.7922 without restraints) Performing minimization step: 4171. Total energy = 5082.0545 kcal/mol (5077.0331 without restraints) Performing minimization step: 4172. Total energy = 5081.2947 kcal/mol (5076.2746 without restraints) Performing minimization step: 4173. Total energy = 5080.5356 kcal/mol (5075.5167 without restraints) Performing minimization step: 4174. Total energy = 5079.7767 kcal/mol (5074.7590 without restraints) Performing minimization step: 4175. Total energy = 5079.0184 kcal/mol (5074.0021 without restraints) Performing minimization step: 4176. Total energy = 5078.2609 kcal/mol (5073.2458 without restraints) Performing minimization step: 4177. Total energy = 5077.5036 kcal/mol (5072.4898 without restraints) Performing minimization step: 4178. Total energy = 5076.7470 kcal/mol (5071.7345 without restraints) Performing minimization step: 4179. Total energy = 5075.9908 kcal/mol (5070.9796 without restraints) Performing minimization step: 4180. Total energy = 5075.2352 kcal/mol (5070.2252 without restraints) Performing minimization step: 4181. Total energy = 5074.4799 kcal/mol (5069.4713 without restraints) Performing minimization step: 4182. Total energy = 5073.7258 kcal/mol (5068.7184 without restraints) Performing minimization step: 4183. Total energy = 5072.9717 kcal/mol (5067.9656 without restraints) Performing minimization step: 4184. Total energy = 5072.2179 kcal/mol (5067.2131 without restraints) Performing minimization step: 4185. Total energy = 5071.4648 kcal/mol (5066.4612 without restraints) Performing minimization step: 4186. Total energy = 5070.7123 kcal/mol (5065.7100 without restraints) Performing minimization step: 4187. Total energy = 5069.9608 kcal/mol (5064.9599 without restraints) Performing minimization step: 4188. Total energy = 5069.2095 kcal/mol (5064.2097 without restraints) Performing minimization step: 4189. Total energy = 5068.4587 kcal/mol (5063.4602 without restraints) Performing minimization step: 4190. Total energy = 5067.7086 kcal/mol (5062.7114 without restraints) Performing minimization step: 4191. Total energy = 5066.9591 kcal/mol (5061.9631 without restraints) Performing minimization step: 4192. Total energy = 5066.2097 kcal/mol (5061.2151 without restraints) Performing minimization step: 4193. Total energy = 5065.4615 kcal/mol (5060.4681 without restraints) Performing minimization step: 4194. Total energy = 5064.7132 kcal/mol (5059.7211 without restraints) Performing minimization step: 4195. Total energy = 5063.9657 kcal/mol (5058.9749 without restraints) Performing minimization step: 4196. Total energy = 5063.2184 kcal/mol (5058.2289 without restraints) Performing minimization step: 4197. Total energy = 5062.4719 kcal/mol (5057.4836 without restraints) Performing minimization step: 4198. Total energy = 5061.7255 kcal/mol (5056.7385 without restraints) Performing minimization step: 4199. Total energy = 5060.9800 kcal/mol (5055.9942 without restraints) Performing minimization step: 4200. Total energy = 5060.2349 kcal/mol (5055.2505 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 5059.4902 kcal/mol (5054.5070 without restraints) Performing minimization step: 4202. Total energy = 5058.7460 kcal/mol (5053.7641 without restraints) Performing minimization step: 4203. Total energy = 5058.0029 kcal/mol (5053.0223 without restraints) Performing minimization step: 4204. Total energy = 5057.2596 kcal/mol (5052.2804 without restraints) Performing minimization step: 4205. Total energy = 5056.5170 kcal/mol (5051.5390 without restraints) Performing minimization step: 4206. Total energy = 5055.7749 kcal/mol (5050.7981 without restraints) Performing minimization step: 4207. Total energy = 5055.0334 kcal/mol (5050.0578 without restraints) Performing minimization step: 4208. Total energy = 5054.2925 kcal/mol (5049.3183 without restraints) Performing minimization step: 4209. Total energy = 5053.5521 kcal/mol (5048.5791 without restraints) Performing minimization step: 4210. Total energy = 5052.8125 kcal/mol (5047.8409 without restraints) Performing minimization step: 4211. Total energy = 5052.0729 kcal/mol (5047.1025 without restraints) Performing minimization step: 4212. Total energy = 5051.3341 kcal/mol (5046.3649 without restraints) Performing minimization step: 4213. Total energy = 5050.5959 kcal/mol (5045.6281 without restraints) Performing minimization step: 4214. Total energy = 5049.8578 kcal/mol (5044.8913 without restraints) Performing minimization step: 4215. Total energy = 5049.1212 kcal/mol (5044.1558 without restraints) Performing minimization step: 4216. Total energy = 5048.3841 kcal/mol (5043.4200 without restraints) Performing minimization step: 4217. Total energy = 5047.6476 kcal/mol (5042.6848 without restraints) Performing minimization step: 4218. Total energy = 5046.9114 kcal/mol (5041.9496 without restraints) Performing minimization step: 4219. Total energy = 5046.1758 kcal/mol (5041.2156 without restraints) Performing minimization step: 4220. Total energy = 5045.4409 kcal/mol (5040.4819 without restraints) Performing minimization step: 4221. Total energy = 5044.7073 kcal/mol (5039.7496 without restraints) Performing minimization step: 4222. Total energy = 5043.9739 kcal/mol (5039.0179 without restraints) Performing minimization step: 4223. Total energy = 5043.2409 kcal/mol (5038.2859 without restraints) Performing minimization step: 4224. Total energy = 5042.5082 kcal/mol (5037.5543 without restraints) Performing minimization step: 4225. Total energy = 5041.7763 kcal/mol (5036.8240 without restraints) Performing minimization step: 4226. Total energy = 5041.0451 kcal/mol (5036.0937 without restraints) Performing minimization step: 4227. Total energy = 5040.3139 kcal/mol (5035.3638 without restraints) Performing minimization step: 4228. Total energy = 5039.5833 kcal/mol (5034.6345 without restraints) Performing minimization step: 4229. Total energy = 5038.8532 kcal/mol (5033.9057 without restraints) Performing minimization step: 4230. Total energy = 5038.1233 kcal/mol (5033.1771 without restraints) Performing minimization step: 4231. Total energy = 5037.3939 kcal/mol (5032.4490 without restraints) Performing minimization step: 4232. Total energy = 5036.6652 kcal/mol (5031.7215 without restraints) Performing minimization step: 4233. Total energy = 5035.9373 kcal/mol (5030.9950 without restraints) Performing minimization step: 4234. Total energy = 5035.2095 kcal/mol (5030.2684 without restraints) Performing minimization step: 4235. Total energy = 5034.4822 kcal/mol (5029.5423 without restraints) Performing minimization step: 4236. Total energy = 5033.7555 kcal/mol (5028.8170 without restraints) Performing minimization step: 4237. Total energy = 5033.0298 kcal/mol (5028.0925 without restraints) Performing minimization step: 4238. Total energy = 5032.3040 kcal/mol (5027.3679 without restraints) Performing minimization step: 4239. Total energy = 5031.5790 kcal/mol (5026.6443 without restraints) Performing minimization step: 4240. Total energy = 5030.8542 kcal/mol (5025.9207 without restraints) Performing minimization step: 4241. Total energy = 5030.1302 kcal/mol (5025.1980 without restraints) Performing minimization step: 4242. Total energy = 5029.4066 kcal/mol (5024.4756 without restraints) Performing minimization step: 4243. Total energy = 5028.6833 kcal/mol (5023.7537 without restraints) Performing minimization step: 4244. Total energy = 5027.9610 kcal/mol (5023.0325 without restraints) Performing minimization step: 4245. Total energy = 5027.2388 kcal/mol (5022.3117 without restraints) Performing minimization step: 4246. Total energy = 5026.5171 kcal/mol (5021.5912 without restraints) Performing minimization step: 4247. Total energy = 5025.7966 kcal/mol (5020.8720 without restraints) Performing minimization step: 4248. Total energy = 5025.0759 kcal/mol (5020.1525 without restraints) Performing minimization step: 4249. Total energy = 5024.3558 kcal/mol (5019.4338 without restraints) Performing minimization step: 4250. Total energy = 5023.6359 kcal/mol (5018.7151 without restraints) Performing minimization step: 4251. Total energy = 5022.9167 kcal/mol (5017.9972 without restraints) Performing minimization step: 4252. Total energy = 5022.1983 kcal/mol (5017.2800 without restraints) Performing minimization step: 4253. Total energy = 5021.4801 kcal/mol (5016.5631 without restraints) Performing minimization step: 4254. Total energy = 5020.7622 kcal/mol (5015.8464 without restraints) Performing minimization step: 4255. Total energy = 5020.0449 kcal/mol (5015.1304 without restraints) Performing minimization step: 4256. Total energy = 5019.3282 kcal/mol (5014.4150 without restraints) Performing minimization step: 4257. Total energy = 5018.6118 kcal/mol (5013.6998 without restraints) Performing minimization step: 4258. Total energy = 5017.8964 kcal/mol (5012.9860 without restraints) Performing minimization step: 4259. Total energy = 5017.1812 kcal/mol (5012.2718 without restraints) Performing minimization step: 4260. Total energy = 5016.4665 kcal/mol (5011.5583 without restraints) Performing minimization step: 4261. Total energy = 5015.7522 kcal/mol (5010.8454 without restraints) Performing minimization step: 4262. Total energy = 5015.0388 kcal/mol (5010.1332 without restraints) Performing minimization step: 4263. Total energy = 5014.3256 kcal/mol (5009.4213 without restraints) Performing minimization step: 4264. Total energy = 5013.6126 kcal/mol (5008.7095 without restraints) Performing minimization step: 4265. Total energy = 5012.9001 kcal/mol (5007.9983 without restraints) Performing minimization step: 4266. Total energy = 5012.1883 kcal/mol (5007.2878 without restraints) Performing minimization step: 4267. Total energy = 5011.4768 kcal/mol (5006.5777 without restraints) Performing minimization step: 4268. Total energy = 5010.7659 kcal/mol (5005.8679 without restraints) Performing minimization step: 4269. Total energy = 5010.0554 kcal/mol (5005.1586 without restraints) Performing minimization step: 4270. Total energy = 5009.3453 kcal/mol (5004.4499 without restraints) Performing minimization step: 4271. Total energy = 5008.6357 kcal/mol (5003.7416 without restraints) Performing minimization step: 4272. Total energy = 5007.9266 kcal/mol (5003.0337 without restraints) Performing minimization step: 4273. Total energy = 5007.2179 kcal/mol (5002.3263 without restraints) Performing minimization step: 4274. Total energy = 5006.5098 kcal/mol (5001.6193 without restraints) Performing minimization step: 4275. Total energy = 5005.8020 kcal/mol (5000.9129 without restraints) Performing minimization step: 4276. Total energy = 5005.0947 kcal/mol (5000.2069 without restraints) Performing minimization step: 4277. Total energy = 5004.3884 kcal/mol (4999.5021 without restraints) Performing minimization step: 4278. Total energy = 5003.6829 kcal/mol (4998.7975 without restraints) Performing minimization step: 4279. Total energy = 5002.9773 kcal/mol (4998.0933 without restraints) Performing minimization step: 4280. Total energy = 5002.2724 kcal/mol (4997.3897 without restraints) Performing minimization step: 4281. Total energy = 5001.5676 kcal/mol (4996.6860 without restraints) Performing minimization step: 4282. Total energy = 5000.8630 kcal/mol (4995.9827 without restraints) Performing minimization step: 4283. Total energy = 5000.1593 kcal/mol (4995.2804 without restraints) Performing minimization step: 4284. Total energy = 4999.4563 kcal/mol (4994.5787 without restraints) Performing minimization step: 4285. Total energy = 4998.7536 kcal/mol (4993.8771 without restraints) Performing minimization step: 4286. Total energy = 4998.0512 kcal/mol (4993.1760 without restraints) Performing minimization step: 4287. Total energy = 4997.3494 kcal/mol (4992.4755 without restraints) Performing minimization step: 4288. Total energy = 4996.6480 kcal/mol (4991.7754 without restraints) Performing minimization step: 4289. Total energy = 4995.9471 kcal/mol (4991.0757 without restraints) Performing minimization step: 4290. Total energy = 4995.2470 kcal/mol (4990.3767 without restraints) Performing minimization step: 4291. Total energy = 4994.5471 kcal/mol (4989.6782 without restraints) Performing minimization step: 4292. Total energy = 4993.8478 kcal/mol (4988.9802 without restraints) Performing minimization step: 4293. Total energy = 4993.1487 kcal/mol (4988.2824 without restraints) Performing minimization step: 4294. Total energy = 4992.4502 kcal/mol (4987.5852 without restraints) Performing minimization step: 4295. Total energy = 4991.7521 kcal/mol (4986.8883 without restraints) Performing minimization step: 4296. Total energy = 4991.0547 kcal/mol (4986.1922 without restraints) Performing minimization step: 4297. Total energy = 4990.3574 kcal/mol (4985.4962 without restraints) Performing minimization step: 4298. Total energy = 4989.6608 kcal/mol (4984.8010 without restraints) Performing minimization step: 4299. Total energy = 4988.9659 kcal/mol (4984.1076 without restraints) Performing minimization step: 4300. Total energy = 4988.2707 kcal/mol (4983.4133 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 4987.5759 kcal/mol (4982.7197 without restraints) Performing minimization step: 4302. Total energy = 4986.8811 kcal/mol (4982.0262 without restraints) Performing minimization step: 4303. Total energy = 4986.1871 kcal/mol (4981.3334 without restraints) Performing minimization step: 4304. Total energy = 4985.4933 kcal/mol (4980.6409 without restraints) Performing minimization step: 4305. Total energy = 4984.8005 kcal/mol (4979.9494 without restraints) Performing minimization step: 4306. Total energy = 4984.1078 kcal/mol (4979.2580 without restraints) Performing minimization step: 4307. Total energy = 4983.4154 kcal/mol (4978.5668 without restraints) Performing minimization step: 4308. Total energy = 4982.7236 kcal/mol (4977.8763 without restraints) Performing minimization step: 4309. Total energy = 4982.0321 kcal/mol (4977.1861 without restraints) Performing minimization step: 4310. Total energy = 4981.3412 kcal/mol (4976.4965 without restraints) Performing minimization step: 4311. Total energy = 4980.6512 kcal/mol (4975.8077 without restraints) Performing minimization step: 4312. Total energy = 4979.9612 kcal/mol (4975.1189 without restraints) Performing minimization step: 4313. Total energy = 4979.2718 kcal/mol (4974.4308 without restraints) Performing minimization step: 4314. Total energy = 4978.5827 kcal/mol (4973.7429 without restraints) Performing minimization step: 4315. Total energy = 4977.8941 kcal/mol (4973.0556 without restraints) Performing minimization step: 4316. Total energy = 4977.2064 kcal/mol (4972.3692 without restraints) Performing minimization step: 4317. Total energy = 4976.5187 kcal/mol (4971.6827 without restraints) Performing minimization step: 4318. Total energy = 4975.8316 kcal/mol (4970.9969 without restraints) Performing minimization step: 4319. Total energy = 4975.1450 kcal/mol (4970.3115 without restraints) Performing minimization step: 4320. Total energy = 4974.4591 kcal/mol (4969.6270 without restraints) Performing minimization step: 4321. Total energy = 4973.7737 kcal/mol (4968.9430 without restraints) Performing minimization step: 4322. Total energy = 4973.0885 kcal/mol (4968.2588 without restraints) Performing minimization step: 4323. Total energy = 4972.4035 kcal/mol (4967.5751 without restraints) Performing minimization step: 4324. Total energy = 4971.7196 kcal/mol (4966.8926 without restraints) Performing minimization step: 4325. Total energy = 4971.0361 kcal/mol (4966.2103 without restraints) Performing minimization step: 4326. Total energy = 4970.3528 kcal/mol (4965.5282 without restraints) Performing minimization step: 4327. Total energy = 4969.6698 kcal/mol (4964.8465 without restraints) Performing minimization step: 4328. Total energy = 4968.9873 kcal/mol (4964.1652 without restraints) Performing minimization step: 4329. Total energy = 4968.3054 kcal/mol (4963.4845 without restraints) Performing minimization step: 4330. Total energy = 4967.6241 kcal/mol (4962.8045 without restraints) Performing minimization step: 4331. Total energy = 4966.9429 kcal/mol (4962.1246 without restraints) Performing minimization step: 4332. Total energy = 4966.2624 kcal/mol (4961.4453 without restraints) Performing minimization step: 4333. Total energy = 4965.5823 kcal/mol (4960.7666 without restraints) Performing minimization step: 4334. Total energy = 4964.9023 kcal/mol (4960.0878 without restraints) Performing minimization step: 4335. Total energy = 4964.2232 kcal/mol (4959.4100 without restraints) Performing minimization step: 4336. Total energy = 4963.5443 kcal/mol (4958.7323 without restraints) Performing minimization step: 4337. Total energy = 4962.8665 kcal/mol (4958.0559 without restraints) Performing minimization step: 4338. Total energy = 4962.1888 kcal/mol (4957.3794 without restraints) Performing minimization step: 4339. Total energy = 4961.5115 kcal/mol (4956.7033 without restraints) Performing minimization step: 4340. Total energy = 4960.8351 kcal/mol (4956.0283 without restraints) Performing minimization step: 4341. Total energy = 4960.1585 kcal/mol (4955.3528 without restraints) Performing minimization step: 4342. Total energy = 4959.4823 kcal/mol (4954.6779 without restraints) Performing minimization step: 4343. Total energy = 4958.8066 kcal/mol (4954.0035 without restraints) Performing minimization step: 4344. Total energy = 4958.1320 kcal/mol (4953.3301 without restraints) Performing minimization step: 4345. Total energy = 4957.4572 kcal/mol (4952.6565 without restraints) Performing minimization step: 4346. Total energy = 4956.7833 kcal/mol (4951.9840 without restraints) Performing minimization step: 4347. Total energy = 4956.1095 kcal/mol (4951.3113 without restraints) Performing minimization step: 4348. Total energy = 4955.4359 kcal/mol (4950.6390 without restraints) Performing minimization step: 4349. Total energy = 4954.7631 kcal/mol (4949.9674 without restraints) Performing minimization step: 4350. Total energy = 4954.0907 kcal/mol (4949.2963 without restraints) Performing minimization step: 4351. Total energy = 4953.4187 kcal/mol (4948.6258 without restraints) Performing minimization step: 4352. Total energy = 4952.7477 kcal/mol (4947.9559 without restraints) Performing minimization step: 4353. Total energy = 4952.0770 kcal/mol (4947.2865 without restraints) Performing minimization step: 4354. Total energy = 4951.4065 kcal/mol (4946.6172 without restraints) Performing minimization step: 4355. Total energy = 4950.7364 kcal/mol (4945.9484 without restraints) Performing minimization step: 4356. Total energy = 4950.0667 kcal/mol (4945.2800 without restraints) Performing minimization step: 4357. Total energy = 4949.3973 kcal/mol (4944.6118 without restraints) Performing minimization step: 4358. Total energy = 4948.7283 kcal/mol (4943.9441 without restraints) Performing minimization step: 4359. Total energy = 4948.0601 kcal/mol (4943.2771 without restraints) Performing minimization step: 4360. Total energy = 4947.3919 kcal/mol (4942.6103 without restraints) Performing minimization step: 4361. Total energy = 4946.7247 kcal/mol (4941.9444 without restraints) Performing minimization step: 4362. Total energy = 4946.0579 kcal/mol (4941.2786 without restraints) Performing minimization step: 4363. Total energy = 4945.3914 kcal/mol (4940.6134 without restraints) Performing minimization step: 4364. Total energy = 4944.7252 kcal/mol (4939.9485 without restraints) Performing minimization step: 4365. Total energy = 4944.0595 kcal/mol (4939.2840 without restraints) Performing minimization step: 4366. Total energy = 4943.3941 kcal/mol (4938.6199 without restraints) Performing minimization step: 4367. Total energy = 4942.7291 kcal/mol (4937.9561 without restraints) Performing minimization step: 4368. Total energy = 4942.0647 kcal/mol (4937.2930 without restraints) Performing minimization step: 4369. Total energy = 4941.4007 kcal/mol (4936.6303 without restraints) Performing minimization step: 4370. Total energy = 4940.7373 kcal/mol (4935.9681 without restraints) Performing minimization step: 4371. Total energy = 4940.0749 kcal/mol (4935.3069 without restraints) Performing minimization step: 4372. Total energy = 4939.4120 kcal/mol (4934.6454 without restraints) Performing minimization step: 4373. Total energy = 4938.7502 kcal/mol (4933.9849 without restraints) Performing minimization step: 4374. Total energy = 4938.0886 kcal/mol (4933.3245 without restraints) Performing minimization step: 4375. Total energy = 4937.4276 kcal/mol (4932.6648 without restraints) Performing minimization step: 4376. Total energy = 4936.7665 kcal/mol (4932.0049 without restraints) Performing minimization step: 4377. Total energy = 4936.1058 kcal/mol (4931.3456 without restraints) Performing minimization step: 4378. Total energy = 4935.4466 kcal/mol (4930.6875 without restraints) Performing minimization step: 4379. Total energy = 4934.7873 kcal/mol (4930.0295 without restraints) Performing minimization step: 4380. Total energy = 4934.1282 kcal/mol (4929.3716 without restraints) Performing minimization step: 4381. Total energy = 4933.4700 kcal/mol (4928.7147 without restraints) Performing minimization step: 4382. Total energy = 4932.8117 kcal/mol (4928.0576 without restraints) Performing minimization step: 4383. Total energy = 4932.1540 kcal/mol (4927.4012 without restraints) Performing minimization step: 4384. Total energy = 4931.4966 kcal/mol (4926.7450 without restraints) Performing minimization step: 4385. Total energy = 4930.8401 kcal/mol (4926.0898 without restraints) Performing minimization step: 4386. Total energy = 4930.1838 kcal/mol (4925.4347 without restraints) Performing minimization step: 4387. Total energy = 4929.5276 kcal/mol (4924.7799 without restraints) Performing minimization step: 4388. Total energy = 4928.8725 kcal/mol (4924.1261 without restraints) Performing minimization step: 4389. Total energy = 4928.2177 kcal/mol (4923.4725 without restraints) Performing minimization step: 4390. Total energy = 4927.5633 kcal/mol (4922.8193 without restraints) Performing minimization step: 4391. Total energy = 4926.9091 kcal/mol (4922.1664 without restraints) Performing minimization step: 4392. Total energy = 4926.2554 kcal/mol (4921.5139 without restraints) Performing minimization step: 4393. Total energy = 4925.6019 kcal/mol (4920.8617 without restraints) Performing minimization step: 4394. Total energy = 4924.9489 kcal/mol (4920.2101 without restraints) Performing minimization step: 4395. Total energy = 4924.2971 kcal/mol (4919.5593 without restraints) Performing minimization step: 4396. Total energy = 4923.6448 kcal/mol (4918.9083 without restraints) Performing minimization step: 4397. Total energy = 4922.9927 kcal/mol (4918.2576 without restraints) Performing minimization step: 4398. Total energy = 4922.3413 kcal/mol (4917.6073 without restraints) Performing minimization step: 4399. Total energy = 4921.6904 kcal/mol (4916.9577 without restraints) Performing minimization step: 4400. Total energy = 4921.0405 kcal/mol (4916.3091 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 4920.3912 kcal/mol (4915.6612 without restraints) Performing minimization step: 4402. Total energy = 4919.7418 kcal/mol (4915.0128 without restraints) Performing minimization step: 4403. Total energy = 4919.0928 kcal/mol (4914.3651 without restraints) Performing minimization step: 4404. Total energy = 4918.4444 kcal/mol (4913.7180 without restraints) Performing minimization step: 4405. Total energy = 4917.7956 kcal/mol (4913.0704 without restraints) Performing minimization step: 4406. Total energy = 4917.1480 kcal/mol (4912.4241 without restraints) Performing minimization step: 4407. Total energy = 4916.5012 kcal/mol (4911.7785 without restraints) Performing minimization step: 4408. Total energy = 4915.8542 kcal/mol (4911.1328 without restraints) Performing minimization step: 4409. Total energy = 4915.2082 kcal/mol (4910.4882 without restraints) Performing minimization step: 4410. Total energy = 4914.5622 kcal/mol (4909.8434 without restraints) Performing minimization step: 4411. Total energy = 4913.9166 kcal/mol (4909.1990 without restraints) Performing minimization step: 4412. Total energy = 4913.2716 kcal/mol (4908.5552 without restraints) Performing minimization step: 4413. Total energy = 4912.6268 kcal/mol (4907.9117 without restraints) Performing minimization step: 4414. Total energy = 4911.9830 kcal/mol (4907.2692 without restraints) Performing minimization step: 4415. Total energy = 4911.3392 kcal/mol (4906.6265 without restraints) Performing minimization step: 4416. Total energy = 4910.6955 kcal/mol (4905.9842 without restraints) Performing minimization step: 4417. Total energy = 4910.0523 kcal/mol (4905.3422 without restraints) Performing minimization step: 4418. Total energy = 4909.4094 kcal/mol (4904.7005 without restraints) Performing minimization step: 4419. Total energy = 4908.7674 kcal/mol (4904.0599 without restraints) Performing minimization step: 4420. Total energy = 4908.1256 kcal/mol (4903.4193 without restraints) Performing minimization step: 4421. Total energy = 4907.4844 kcal/mol (4902.7793 without restraints) Performing minimization step: 4422. Total energy = 4906.8435 kcal/mol (4902.1398 without restraints) Performing minimization step: 4423. Total energy = 4906.2031 kcal/mol (4901.5005 without restraints) Performing minimization step: 4424. Total energy = 4905.5630 kcal/mol (4900.8617 without restraints) Performing minimization step: 4425. Total energy = 4904.9235 kcal/mol (4900.2234 without restraints) Performing minimization step: 4426. Total energy = 4904.2842 kcal/mol (4899.5854 without restraints) Performing minimization step: 4427. Total energy = 4903.6454 kcal/mol (4898.9480 without restraints) Performing minimization step: 4428. Total energy = 4903.0074 kcal/mol (4898.3111 without restraints) Performing minimization step: 4429. Total energy = 4902.3694 kcal/mol (4897.6745 without restraints) Performing minimization step: 4430. Total energy = 4901.7322 kcal/mol (4897.0387 without restraints) Performing minimization step: 4431. Total energy = 4901.0952 kcal/mol (4896.4027 without restraints) Performing minimization step: 4432. Total energy = 4900.4585 kcal/mol (4895.7672 without restraints) Performing minimization step: 4433. Total energy = 4899.8225 kcal/mol (4895.1326 without restraints) Performing minimization step: 4434. Total energy = 4899.1869 kcal/mol (4894.4981 without restraints) Performing minimization step: 4435. Total energy = 4898.5515 kcal/mol (4893.8640 without restraints) Performing minimization step: 4436. Total energy = 4897.9168 kcal/mol (4893.2306 without restraints) Performing minimization step: 4437. Total energy = 4897.2821 kcal/mol (4892.5971 without restraints) Performing minimization step: 4438. Total energy = 4896.6479 kcal/mol (4891.9641 without restraints) Performing minimization step: 4439. Total energy = 4896.0145 kcal/mol (4891.3321 without restraints) Performing minimization step: 4440. Total energy = 4895.3815 kcal/mol (4890.7002 without restraints) Performing minimization step: 4441. Total energy = 4894.7487 kcal/mol (4890.0689 without restraints) Performing minimization step: 4442. Total energy = 4894.1163 kcal/mol (4889.4376 without restraints) Performing minimization step: 4443. Total energy = 4893.4840 kcal/mol (4888.8065 without restraints) Performing minimization step: 4444. Total energy = 4892.8523 kcal/mol (4888.1760 without restraints) Performing minimization step: 4445. Total energy = 4892.2211 kcal/mol (4887.5461 without restraints) Performing minimization step: 4446. Total energy = 4891.5902 kcal/mol (4886.9165 without restraints) Performing minimization step: 4447. Total energy = 4890.9600 kcal/mol (4886.2875 without restraints) Performing minimization step: 4448. Total energy = 4890.3302 kcal/mol (4885.6588 without restraints) Performing minimization step: 4449. Total energy = 4889.7006 kcal/mol (4885.0305 without restraints) Performing minimization step: 4450. Total energy = 4889.0715 kcal/mol (4884.4028 without restraints) Performing minimization step: 4451. Total energy = 4888.4428 kcal/mol (4883.7754 without restraints) Performing minimization step: 4452. Total energy = 4887.8144 kcal/mol (4883.1482 without restraints) Performing minimization step: 4453. Total energy = 4887.1864 kcal/mol (4882.5215 without restraints) Performing minimization step: 4454. Total energy = 4886.5593 kcal/mol (4881.8958 without restraints) Performing minimization step: 4455. Total energy = 4885.9323 kcal/mol (4881.2698 without restraints) Performing minimization step: 4456. Total energy = 4885.3056 kcal/mol (4880.6444 without restraints) Performing minimization step: 4457. Total energy = 4884.6793 kcal/mol (4880.0194 without restraints) Performing minimization step: 4458. Total energy = 4884.0534 kcal/mol (4879.3947 without restraints) Performing minimization step: 4459. Total energy = 4883.4279 kcal/mol (4878.7706 without restraints) Performing minimization step: 4460. Total energy = 4882.8030 kcal/mol (4878.1468 without restraints) Performing minimization step: 4461. Total energy = 4882.1783 kcal/mol (4877.5233 without restraints) Performing minimization step: 4462. Total energy = 4881.5544 kcal/mol (4876.9008 without restraints) Performing minimization step: 4463. Total energy = 4880.9304 kcal/mol (4876.2779 without restraints) Performing minimization step: 4464. Total energy = 4880.3074 kcal/mol (4875.6563 without restraints) Performing minimization step: 4465. Total energy = 4879.6844 kcal/mol (4875.0345 without restraints) Performing minimization step: 4466. Total energy = 4879.0619 kcal/mol (4874.4132 without restraints) Performing minimization step: 4467. Total energy = 4878.4397 kcal/mol (4873.7923 without restraints) Performing minimization step: 4468. Total energy = 4877.8181 kcal/mol (4873.1719 without restraints) Performing minimization step: 4469. Total energy = 4877.1971 kcal/mol (4872.5523 without restraints) Performing minimization step: 4470. Total energy = 4876.5763 kcal/mol (4871.9326 without restraints) Performing minimization step: 4471. Total energy = 4875.9559 kcal/mol (4871.3134 without restraints) Performing minimization step: 4472. Total energy = 4875.3359 kcal/mol (4870.6947 without restraints) Performing minimization step: 4473. Total energy = 4874.7163 kcal/mol (4870.0764 without restraints) Performing minimization step: 4474. Total energy = 4874.0971 kcal/mol (4869.4583 without restraints) Performing minimization step: 4475. Total energy = 4873.4784 kcal/mol (4868.8409 without restraints) Performing minimization step: 4476. Total energy = 4872.8598 kcal/mol (4868.2236 without restraints) Performing minimization step: 4477. Total energy = 4872.2416 kcal/mol (4867.6067 without restraints) Performing minimization step: 4478. Total energy = 4871.6241 kcal/mol (4866.9905 without restraints) Performing minimization step: 4479. Total energy = 4871.0069 kcal/mol (4866.3744 without restraints) Performing minimization step: 4480. Total energy = 4870.3905 kcal/mol (4865.7593 without restraints) Performing minimization step: 4481. Total energy = 4869.7741 kcal/mol (4865.1444 without restraints) Performing minimization step: 4482. Total energy = 4869.1584 kcal/mol (4864.5298 without restraints) Performing minimization step: 4483. Total energy = 4868.5428 kcal/mol (4863.9154 without restraints) Performing minimization step: 4484. Total energy = 4867.9278 kcal/mol (4863.3016 without restraints) Performing minimization step: 4485. Total energy = 4867.3131 kcal/mol (4862.6881 without restraints) Performing minimization step: 4486. Total energy = 4866.6985 kcal/mol (4862.0749 without restraints) Performing minimization step: 4487. Total energy = 4866.0848 kcal/mol (4861.4624 without restraints) Performing minimization step: 4488. Total energy = 4865.4712 kcal/mol (4860.8501 without restraints) Performing minimization step: 4489. Total energy = 4864.8580 kcal/mol (4860.2380 without restraints) Performing minimization step: 4490. Total energy = 4864.2453 kcal/mol (4859.6266 without restraints) Performing minimization step: 4491. Total energy = 4863.6325 kcal/mol (4859.0151 without restraints) Performing minimization step: 4492. Total energy = 4863.0205 kcal/mol (4858.4045 without restraints) Performing minimization step: 4493. Total energy = 4862.4091 kcal/mol (4857.7942 without restraints) Performing minimization step: 4494. Total energy = 4861.7980 kcal/mol (4857.1844 without restraints) Performing minimization step: 4495. Total energy = 4861.1876 kcal/mol (4856.5752 without restraints) Performing minimization step: 4496. Total energy = 4860.5777 kcal/mol (4855.9666 without restraints) Performing minimization step: 4497. Total energy = 4859.9676 kcal/mol (4855.3577 without restraints) Performing minimization step: 4498. Total energy = 4859.3584 kcal/mol (4854.7497 without restraints) Performing minimization step: 4499. Total energy = 4858.7492 kcal/mol (4854.1418 without restraints) Performing minimization step: 4500. Total energy = 4858.1401 kcal/mol (4853.5339 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 4857.5319 kcal/mol (4852.9270 without restraints) Performing minimization step: 4502. Total energy = 4856.9239 kcal/mol (4852.3202 without restraints) Performing minimization step: 4503. Total energy = 4856.3164 kcal/mol (4851.7140 without restraints) Performing minimization step: 4504. Total energy = 4855.7099 kcal/mol (4851.1087 without restraints) Performing minimization step: 4505. Total energy = 4855.1032 kcal/mol (4850.5033 without restraints) Performing minimization step: 4506. Total energy = 4854.4962 kcal/mol (4849.8976 without restraints) Performing minimization step: 4507. Total energy = 4853.8902 kcal/mol (4849.2929 without restraints) Performing minimization step: 4508. Total energy = 4853.2845 kcal/mol (4848.6884 without restraints) Performing minimization step: 4509. Total energy = 4852.6793 kcal/mol (4848.0843 without restraints) Performing minimization step: 4510. Total energy = 4852.0745 kcal/mol (4847.4808 without restraints) Performing minimization step: 4511. Total energy = 4851.4704 kcal/mol (4846.8781 without restraints) Performing minimization step: 4512. Total energy = 4850.8663 kcal/mol (4846.2751 without restraints) Performing minimization step: 4513. Total energy = 4850.2626 kcal/mol (4845.6727 without restraints) Performing minimization step: 4514. Total energy = 4849.6593 kcal/mol (4845.0706 without restraints) Performing minimization step: 4515. Total energy = 4849.0565 kcal/mol (4844.4691 without restraints) Performing minimization step: 4516. Total energy = 4848.4543 kcal/mol (4843.8681 without restraints) Performing minimization step: 4517. Total energy = 4847.8525 kcal/mol (4843.2677 without restraints) Performing minimization step: 4518. Total energy = 4847.2517 kcal/mol (4842.6680 without restraints) Performing minimization step: 4519. Total energy = 4846.6503 kcal/mol (4842.0678 without restraints) Performing minimization step: 4520. Total energy = 4846.0497 kcal/mol (4841.4685 without restraints) Performing minimization step: 4521. Total energy = 4845.4493 kcal/mol (4840.8694 without restraints) Performing minimization step: 4522. Total energy = 4844.8494 kcal/mol (4840.2706 without restraints) Performing minimization step: 4523. Total energy = 4844.2501 kcal/mol (4839.6727 without restraints) Performing minimization step: 4524. Total energy = 4843.6509 kcal/mol (4839.0748 without restraints) Performing minimization step: 4525. Total energy = 4843.0521 kcal/mol (4838.4772 without restraints) Performing minimization step: 4526. Total energy = 4842.4537 kcal/mol (4837.8799 without restraints) Performing minimization step: 4527. Total energy = 4841.8555 kcal/mol (4837.2831 without restraints) Performing minimization step: 4528. Total energy = 4841.2578 kcal/mol (4836.6865 without restraints) Performing minimization step: 4529. Total energy = 4840.6602 kcal/mol (4836.0903 without restraints) Performing minimization step: 4530. Total energy = 4840.0631 kcal/mol (4835.4944 without restraints) Performing minimization step: 4531. Total energy = 4839.4661 kcal/mol (4834.8986 without restraints) Performing minimization step: 4532. Total energy = 4838.8694 kcal/mol (4834.3032 without restraints) Performing minimization step: 4533. Total energy = 4838.2739 kcal/mol (4833.7090 without restraints) Performing minimization step: 4534. Total energy = 4837.6786 kcal/mol (4833.1151 without restraints) Performing minimization step: 4535. Total energy = 4837.0841 kcal/mol (4832.5217 without restraints) Performing minimization step: 4536. Total energy = 4836.4897 kcal/mol (4831.9284 without restraints) Performing minimization step: 4537. Total energy = 4835.8956 kcal/mol (4831.3356 without restraints) Performing minimization step: 4538. Total energy = 4835.3019 kcal/mol (4830.7432 without restraints) Performing minimization step: 4539. Total energy = 4834.7081 kcal/mol (4830.1504 without restraints) Performing minimization step: 4540. Total energy = 4834.1150 kcal/mol (4829.5589 without restraints) Performing minimization step: 4541. Total energy = 4833.5224 kcal/mol (4828.9674 without restraints) Performing minimization step: 4542. Total energy = 4832.9299 kcal/mol (4828.3761 without restraints) Performing minimization step: 4543. Total energy = 4832.3380 kcal/mol (4827.7855 without restraints) Performing minimization step: 4544. Total energy = 4831.7466 kcal/mol (4827.1954 without restraints) Performing minimization step: 4545. Total energy = 4831.1553 kcal/mol (4826.6053 without restraints) Performing minimization step: 4546. Total energy = 4830.5643 kcal/mol (4826.0156 without restraints) Performing minimization step: 4547. Total energy = 4829.9745 kcal/mol (4825.4271 without restraints) Performing minimization step: 4548. Total energy = 4829.3845 kcal/mol (4824.8383 without restraints) Performing minimization step: 4549. Total energy = 4828.7948 kcal/mol (4824.2497 without restraints) Performing minimization step: 4550. Total energy = 4828.2054 kcal/mol (4823.6617 without restraints) Performing minimization step: 4551. Total energy = 4827.6165 kcal/mol (4823.0740 without restraints) Performing minimization step: 4552. Total energy = 4827.0278 kcal/mol (4822.4866 without restraints) Performing minimization step: 4553. Total energy = 4826.4398 kcal/mol (4821.8997 without restraints) Performing minimization step: 4554. Total energy = 4825.8520 kcal/mol (4821.3133 without restraints) Performing minimization step: 4555. Total energy = 4825.2648 kcal/mol (4820.7272 without restraints) Performing minimization step: 4556. Total energy = 4824.6776 kcal/mol (4820.1413 without restraints) Performing minimization step: 4557. Total energy = 4824.0910 kcal/mol (4819.5560 without restraints) Performing minimization step: 4558. Total energy = 4823.5049 kcal/mol (4818.9712 without restraints) Performing minimization step: 4559. Total energy = 4822.9189 kcal/mol (4818.3864 without restraints) Performing minimization step: 4560. Total energy = 4822.3333 kcal/mol (4817.8020 without restraints) Performing minimization step: 4561. Total energy = 4821.7477 kcal/mol (4817.2175 without restraints) Performing minimization step: 4562. Total energy = 4821.1627 kcal/mol (4816.6339 without restraints) Performing minimization step: 4563. Total energy = 4820.5784 kcal/mol (4816.0508 without restraints) Performing minimization step: 4564. Total energy = 4819.9945 kcal/mol (4815.4683 without restraints) Performing minimization step: 4565. Total energy = 4819.4109 kcal/mol (4814.8858 without restraints) Performing minimization step: 4566. Total energy = 4818.8276 kcal/mol (4814.3039 without restraints) Performing minimization step: 4567. Total energy = 4818.2453 kcal/mol (4813.7226 without restraints) Performing minimization step: 4568. Total energy = 4817.6626 kcal/mol (4813.1412 without restraints) Performing minimization step: 4569. Total energy = 4817.0803 kcal/mol (4812.5602 without restraints) Performing minimization step: 4570. Total energy = 4816.4984 kcal/mol (4811.9796 without restraints) Performing minimization step: 4571. Total energy = 4815.9170 kcal/mol (4811.3993 without restraints) Performing minimization step: 4572. Total energy = 4815.3363 kcal/mol (4810.8201 without restraints) Performing minimization step: 4573. Total energy = 4814.7555 kcal/mol (4810.2404 without restraints) Performing minimization step: 4574. Total energy = 4814.1753 kcal/mol (4809.6614 without restraints) Performing minimization step: 4575. Total energy = 4813.5953 kcal/mol (4809.0827 without restraints) Performing minimization step: 4576. Total energy = 4813.0162 kcal/mol (4808.5048 without restraints) Performing minimization step: 4577. Total energy = 4812.4374 kcal/mol (4807.9272 without restraints) Performing minimization step: 4578. Total energy = 4811.8587 kcal/mol (4807.3498 without restraints) Performing minimization step: 4579. Total energy = 4811.2802 kcal/mol (4806.7725 without restraints) Performing minimization step: 4580. Total energy = 4810.7020 kcal/mol (4806.1956 without restraints) Performing minimization step: 4581. Total energy = 4810.1247 kcal/mol (4805.6194 without restraints) Performing minimization step: 4582. Total energy = 4809.5479 kcal/mol (4805.0441 without restraints) Performing minimization step: 4583. Total energy = 4808.9712 kcal/mol (4804.4685 without restraints) Performing minimization step: 4584. Total energy = 4808.3947 kcal/mol (4803.8933 without restraints) Performing minimization step: 4585. Total energy = 4807.8185 kcal/mol (4803.3183 without restraints) Performing minimization step: 4586. Total energy = 4807.2426 kcal/mol (4802.7437 without restraints) Performing minimization step: 4587. Total energy = 4806.6671 kcal/mol (4802.1694 without restraints) Performing minimization step: 4588. Total energy = 4806.0930 kcal/mol (4801.5966 without restraints) Performing minimization step: 4589. Total energy = 4805.5179 kcal/mol (4801.0228 without restraints) Performing minimization step: 4590. Total energy = 4804.9438 kcal/mol (4800.4499 without restraints) Performing minimization step: 4591. Total energy = 4804.3698 kcal/mol (4799.8771 without restraints) Performing minimization step: 4592. Total energy = 4803.7966 kcal/mol (4799.3055 without restraints) Performing minimization step: 4593. Total energy = 4803.2236 kcal/mol (4798.7334 without restraints) Performing minimization step: 4594. Total energy = 4802.6505 kcal/mol (4798.1615 without restraints) Performing minimization step: 4595. Total energy = 4802.0778 kcal/mol (4797.5901 without restraints) Performing minimization step: 4596. Total energy = 4801.5058 kcal/mol (4797.0193 without restraints) Performing minimization step: 4597. Total energy = 4800.9341 kcal/mol (4796.4488 without restraints) Performing minimization step: 4598. Total energy = 4800.3628 kcal/mol (4795.8788 without restraints) Performing minimization step: 4599. Total energy = 4799.7917 kcal/mol (4795.3089 without restraints) Performing minimization step: 4600. Total energy = 4799.2210 kcal/mol (4794.7395 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 4798.6507 kcal/mol (4794.1705 without restraints) Performing minimization step: 4602. Total energy = 4798.0810 kcal/mol (4793.6021 without restraints) Performing minimization step: 4603. Total energy = 4797.5117 kcal/mol (4793.0339 without restraints) Performing minimization step: 4604. Total energy = 4796.9425 kcal/mol (4792.4661 without restraints) Performing minimization step: 4605. Total energy = 4796.3742 kcal/mol (4791.8990 without restraints) Performing minimization step: 4606. Total energy = 4795.8061 kcal/mol (4791.3321 without restraints) Performing minimization step: 4607. Total energy = 4795.2379 kcal/mol (4790.7651 without restraints) Performing minimization step: 4608. Total energy = 4794.6697 kcal/mol (4790.1982 without restraints) Performing minimization step: 4609. Total energy = 4794.1022 kcal/mol (4789.6319 without restraints) Performing minimization step: 4610. Total energy = 4793.5353 kcal/mol (4789.0663 without restraints) Performing minimization step: 4611. Total energy = 4792.9688 kcal/mol (4788.5010 without restraints) Performing minimization step: 4612. Total energy = 4792.4026 kcal/mol (4787.9361 without restraints) Performing minimization step: 4613. Total energy = 4791.8368 kcal/mol (4787.3715 without restraints) Performing minimization step: 4614. Total energy = 4791.2712 kcal/mol (4786.8072 without restraints) Performing minimization step: 4615. Total energy = 4790.7060 kcal/mol (4786.2431 without restraints) Performing minimization step: 4616. Total energy = 4790.1415 kcal/mol (4785.6802 without restraints) Performing minimization step: 4617. Total energy = 4789.5774 kcal/mol (4785.1171 without restraints) Performing minimization step: 4618. Total energy = 4789.0130 kcal/mol (4784.5539 without restraints) Performing minimization step: 4619. Total energy = 4788.4493 kcal/mol (4783.9914 without restraints) Performing minimization step: 4620. Total energy = 4787.8860 kcal/mol (4783.4295 without restraints) Performing minimization step: 4621. Total energy = 4787.3236 kcal/mol (4782.8683 without restraints) Performing minimization step: 4622. Total energy = 4786.7607 kcal/mol (4782.3066 without restraints) Performing minimization step: 4623. Total energy = 4786.1989 kcal/mol (4781.7460 without restraints) Performing minimization step: 4624. Total energy = 4785.6372 kcal/mol (4781.1856 without restraints) Performing minimization step: 4625. Total energy = 4785.0756 kcal/mol (4780.6252 without restraints) Performing minimization step: 4626. Total energy = 4784.5142 kcal/mol (4780.0650 without restraints) Performing minimization step: 4627. Total energy = 4783.9538 kcal/mol (4779.5060 without restraints) Performing minimization step: 4628. Total energy = 4783.3935 kcal/mol (4778.9468 without restraints) Performing minimization step: 4629. Total energy = 4782.8334 kcal/mol (4778.3879 without restraints) Performing minimization step: 4630. Total energy = 4782.2735 kcal/mol (4777.8295 without restraints) Performing minimization step: 4631. Total energy = 4781.7142 kcal/mol (4777.2713 without restraints) Performing minimization step: 4632. Total energy = 4781.1548 kcal/mol (4776.7131 without restraints) Performing minimization step: 4633. Total energy = 4780.5960 kcal/mol (4776.1555 without restraints) Performing minimization step: 4634. Total energy = 4780.0375 kcal/mol (4775.5983 without restraints) Performing minimization step: 4635. Total energy = 4779.4797 kcal/mol (4775.0416 without restraints) Performing minimization step: 4636. Total energy = 4778.9222 kcal/mol (4774.4854 without restraints) Performing minimization step: 4637. Total energy = 4778.3649 kcal/mol (4773.9294 without restraints) Performing minimization step: 4638. Total energy = 4777.8078 kcal/mol (4773.3735 without restraints) Performing minimization step: 4639. Total energy = 4777.2511 kcal/mol (4772.8181 without restraints) Performing minimization step: 4640. Total energy = 4776.6950 kcal/mol (4772.2632 without restraints) Performing minimization step: 4641. Total energy = 4776.1392 kcal/mol (4771.7087 without restraints) Performing minimization step: 4642. Total energy = 4775.5835 kcal/mol (4771.1543 without restraints) Performing minimization step: 4643. Total energy = 4775.0290 kcal/mol (4770.6010 without restraints) Performing minimization step: 4644. Total energy = 4774.4745 kcal/mol (4770.0476 without restraints) Performing minimization step: 4645. Total energy = 4773.9197 kcal/mol (4769.4942 without restraints) Performing minimization step: 4646. Total energy = 4773.3655 kcal/mol (4768.9412 without restraints) Performing minimization step: 4647. Total energy = 4772.8120 kcal/mol (4768.3889 without restraints) Performing minimization step: 4648. Total energy = 4772.2584 kcal/mol (4767.8366 without restraints) Performing minimization step: 4649. Total energy = 4771.7054 kcal/mol (4767.2849 without restraints) Performing minimization step: 4650. Total energy = 4771.1527 kcal/mol (4766.7335 without restraints) Performing minimization step: 4651. Total energy = 4770.6004 kcal/mol (4766.1824 without restraints) Performing minimization step: 4652. Total energy = 4770.0488 kcal/mol (4765.6320 without restraints) Performing minimization step: 4653. Total energy = 4769.4976 kcal/mol (4765.0820 without restraints) Performing minimization step: 4654. Total energy = 4768.9464 kcal/mol (4764.5320 without restraints) Performing minimization step: 4655. Total energy = 4768.3953 kcal/mol (4763.9822 without restraints) Performing minimization step: 4656. Total energy = 4767.8451 kcal/mol (4763.4333 without restraints) Performing minimization step: 4657. Total energy = 4767.2948 kcal/mol (4762.8842 without restraints) Performing minimization step: 4658. Total energy = 4766.7447 kcal/mol (4762.3353 without restraints) Performing minimization step: 4659. Total energy = 4766.1953 kcal/mol (4761.7872 without restraints) Performing minimization step: 4660. Total energy = 4765.6460 kcal/mol (4761.2390 without restraints) Performing minimization step: 4661. Total energy = 4765.0968 kcal/mol (4760.6912 without restraints) Performing minimization step: 4662. Total energy = 4764.5482 kcal/mol (4760.1439 without restraints) Performing minimization step: 4663. Total energy = 4764.0000 kcal/mol (4759.5969 without restraints) Performing minimization step: 4664. Total energy = 4763.4523 kcal/mol (4759.0504 without restraints) Performing minimization step: 4665. Total energy = 4762.9056 kcal/mol (4758.5049 without restraints) Performing minimization step: 4666. Total energy = 4762.3586 kcal/mol (4757.9591 without restraints) Performing minimization step: 4667. Total energy = 4761.8120 kcal/mol (4757.4139 without restraints) Performing minimization step: 4668. Total energy = 4761.2658 kcal/mol (4756.8688 without restraints) Performing minimization step: 4669. Total energy = 4760.7199 kcal/mol (4756.3242 without restraints) Performing minimization step: 4670. Total energy = 4760.1739 kcal/mol (4755.7795 without restraints) Performing minimization step: 4671. Total energy = 4759.6288 kcal/mol (4755.2356 without restraints) Performing minimization step: 4672. Total energy = 4759.0837 kcal/mol (4754.6918 without restraints) Performing minimization step: 4673. Total energy = 4758.5390 kcal/mol (4754.1484 without restraints) Performing minimization step: 4674. Total energy = 4757.9948 kcal/mol (4753.6053 without restraints) Performing minimization step: 4675. Total energy = 4757.4511 kcal/mol (4753.0630 without restraints) Performing minimization step: 4676. Total energy = 4756.9076 kcal/mol (4752.5208 without restraints) Performing minimization step: 4677. Total energy = 4756.3643 kcal/mol (4751.9786 without restraints) Performing minimization step: 4678. Total energy = 4755.8214 kcal/mol (4751.4370 without restraints) Performing minimization step: 4679. Total energy = 4755.2796 kcal/mol (4750.8965 without restraints) Performing minimization step: 4680. Total energy = 4754.7370 kcal/mol (4750.3548 without restraints) Performing minimization step: 4681. Total energy = 4754.1947 kcal/mol (4749.8138 without restraints) Performing minimization step: 4682. Total energy = 4753.6530 kcal/mol (4749.2735 without restraints) Performing minimization step: 4683. Total energy = 4753.1118 kcal/mol (4748.7335 without restraints) Performing minimization step: 4684. Total energy = 4752.5707 kcal/mol (4748.1936 without restraints) Performing minimization step: 4685. Total energy = 4752.0301 kcal/mol (4747.6544 without restraints) Performing minimization step: 4686. Total energy = 4751.4901 kcal/mol (4747.1156 without restraints) Performing minimization step: 4687. Total energy = 4750.9502 kcal/mol (4746.5768 without restraints) Performing minimization step: 4688. Total energy = 4750.4106 kcal/mol (4746.0385 without restraints) Performing minimization step: 4689. Total energy = 4749.8710 kcal/mol (4745.5001 without restraints) Performing minimization step: 4690. Total energy = 4749.3329 kcal/mol (4744.9633 without restraints) Performing minimization step: 4691. Total energy = 4748.7943 kcal/mol (4744.4258 without restraints) Performing minimization step: 4692. Total energy = 4748.2558 kcal/mol (4743.8887 without restraints) Performing minimization step: 4693. Total energy = 4747.7180 kcal/mol (4743.3521 without restraints) Performing minimization step: 4694. Total energy = 4747.1803 kcal/mol (4742.8157 without restraints) Performing minimization step: 4695. Total energy = 4746.6430 kcal/mol (4742.2796 without restraints) Performing minimization step: 4696. Total energy = 4746.1059 kcal/mol (4741.7438 without restraints) Performing minimization step: 4697. Total energy = 4745.5699 kcal/mol (4741.2089 without restraints) Performing minimization step: 4698. Total energy = 4745.0340 kcal/mol (4740.6743 without restraints) Performing minimization step: 4699. Total energy = 4744.4981 kcal/mol (4740.1398 without restraints) Performing minimization step: 4700. Total energy = 4743.9623 kcal/mol (4739.6051 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 4743.4273 kcal/mol (4739.0713 without restraints) Performing minimization step: 4702. Total energy = 4742.8925 kcal/mol (4738.5378 without restraints) Performing minimization step: 4703. Total energy = 4742.3578 kcal/mol (4738.0043 without restraints) Performing minimization step: 4704. Total energy = 4741.8233 kcal/mol (4737.4710 without restraints) Performing minimization step: 4705. Total energy = 4741.2892 kcal/mol (4736.9382 without restraints) Performing minimization step: 4706. Total energy = 4740.7555 kcal/mol (4736.4058 without restraints) Performing minimization step: 4707. Total energy = 4740.2222 kcal/mol (4735.8737 without restraints) Performing minimization step: 4708. Total energy = 4739.6893 kcal/mol (4735.3420 without restraints) Performing minimization step: 4709. Total energy = 4739.1576 kcal/mol (4734.8116 without restraints) Performing minimization step: 4710. Total energy = 4738.6253 kcal/mol (4734.2805 without restraints) Performing minimization step: 4711. Total energy = 4738.0936 kcal/mol (4733.7500 without restraints) Performing minimization step: 4712. Total energy = 4737.5619 kcal/mol (4733.2196 without restraints) Performing minimization step: 4713. Total energy = 4737.0305 kcal/mol (4732.6893 without restraints) Performing minimization step: 4714. Total energy = 4736.4993 kcal/mol (4732.1595 without restraints) Performing minimization step: 4715. Total energy = 4735.9690 kcal/mol (4731.6305 without restraints) Performing minimization step: 4716. Total energy = 4735.4386 kcal/mol (4731.1012 without restraints) Performing minimization step: 4717. Total energy = 4734.9085 kcal/mol (4730.5724 without restraints) Performing minimization step: 4718. Total energy = 4734.3790 kcal/mol (4730.0441 without restraints) Performing minimization step: 4719. Total energy = 4733.8498 kcal/mol (4729.5162 without restraints) Performing minimization step: 4720. Total energy = 4733.3214 kcal/mol (4728.9890 without restraints) Performing minimization step: 4721. Total energy = 4732.7932 kcal/mol (4728.4623 without restraints) Performing minimization step: 4722. Total energy = 4732.2654 kcal/mol (4727.9355 without restraints) Performing minimization step: 4723. Total energy = 4731.7375 kcal/mol (4727.4087 without restraints) Performing minimization step: 4724. Total energy = 4731.2100 kcal/mol (4726.8827 without restraints) Performing minimization step: 4725. Total energy = 4730.6834 kcal/mol (4726.3573 without restraints) Performing minimization step: 4726. Total energy = 4730.1565 kcal/mol (4725.8316 without restraints) Performing minimization step: 4727. Total energy = 4729.6298 kcal/mol (4725.3061 without restraints) Performing minimization step: 4728. Total energy = 4729.1036 kcal/mol (4724.7812 without restraints) Performing minimization step: 4729. Total energy = 4728.5780 kcal/mol (4724.2568 without restraints) Performing minimization step: 4730. Total energy = 4728.0521 kcal/mol (4723.7322 without restraints) Performing minimization step: 4731. Total energy = 4727.5270 kcal/mol (4723.2084 without restraints) Performing minimization step: 4732. Total energy = 4727.0023 kcal/mol (4722.6848 without restraints) Performing minimization step: 4733. Total energy = 4726.4775 kcal/mol (4722.1613 without restraints) Performing minimization step: 4734. Total energy = 4725.9531 kcal/mol (4721.6381 without restraints) Performing minimization step: 4735. Total energy = 4725.4289 kcal/mol (4721.1151 without restraints) Performing minimization step: 4736. Total energy = 4724.9055 kcal/mol (4720.5929 without restraints) Performing minimization step: 4737. Total energy = 4724.3820 kcal/mol (4720.0707 without restraints) Performing minimization step: 4738. Total energy = 4723.8596 kcal/mol (4719.5495 without restraints) Performing minimization step: 4739. Total energy = 4723.3375 kcal/mol (4719.0289 without restraints) Performing minimization step: 4740. Total energy = 4722.8154 kcal/mol (4718.5079 without restraints) Performing minimization step: 4741. Total energy = 4722.2934 kcal/mol (4717.9870 without restraints) Performing minimization step: 4742. Total energy = 4721.7719 kcal/mol (4717.4670 without restraints) Performing minimization step: 4743. Total energy = 4721.2506 kcal/mol (4716.9467 without restraints) Performing minimization step: 4744. Total energy = 4720.7298 kcal/mol (4716.4272 without restraints) Performing minimization step: 4745. Total energy = 4720.2093 kcal/mol (4715.9079 without restraints) Performing minimization step: 4746. Total energy = 4719.6892 kcal/mol (4715.3891 without restraints) Performing minimization step: 4747. Total energy = 4719.1696 kcal/mol (4714.8711 without restraints) Performing minimization step: 4748. Total energy = 4718.6506 kcal/mol (4714.3529 without restraints) Performing minimization step: 4749. Total energy = 4718.1316 kcal/mol (4713.8352 without restraints) Performing minimization step: 4750. Total energy = 4717.6125 kcal/mol (4713.3174 without restraints) Performing minimization step: 4751. Total energy = 4717.0938 kcal/mol (4712.8000 without restraints) Performing minimization step: 4752. Total energy = 4716.5756 kcal/mol (4712.2829 without restraints) Performing minimization step: 4753. Total energy = 4716.0578 kcal/mol (4711.7663 without restraints) Performing minimization step: 4754. Total energy = 4715.5399 kcal/mol (4711.2497 without restraints) Performing minimization step: 4755. Total energy = 4715.0225 kcal/mol (4710.7336 without restraints) Performing minimization step: 4756. Total energy = 4714.5053 kcal/mol (4710.2176 without restraints) Performing minimization step: 4757. Total energy = 4713.9883 kcal/mol (4709.7017 without restraints) Performing minimization step: 4758. Total energy = 4713.4719 kcal/mol (4709.1867 without restraints) Performing minimization step: 4759. Total energy = 4712.9556 kcal/mol (4708.6716 without restraints) Performing minimization step: 4760. Total energy = 4712.4397 kcal/mol (4708.1570 without restraints) Performing minimization step: 4761. Total energy = 4711.9242 kcal/mol (4707.6427 without restraints) Performing minimization step: 4762. Total energy = 4711.4091 kcal/mol (4707.1289 without restraints) Performing minimization step: 4763. Total energy = 4710.8945 kcal/mol (4706.6155 without restraints) Performing minimization step: 4764. Total energy = 4710.3798 kcal/mol (4706.1020 without restraints) Performing minimization step: 4765. Total energy = 4709.8654 kcal/mol (4705.5889 without restraints) Performing minimization step: 4766. Total energy = 4709.3517 kcal/mol (4705.0765 without restraints) Performing minimization step: 4767. Total energy = 4708.8378 kcal/mol (4704.5638 without restraints) Performing minimization step: 4768. Total energy = 4708.3244 kcal/mol (4704.0516 without restraints) Performing minimization step: 4769. Total energy = 4707.8113 kcal/mol (4703.5397 without restraints) Performing minimization step: 4770. Total energy = 4707.2987 kcal/mol (4703.0284 without restraints) Performing minimization step: 4771. Total energy = 4706.7868 kcal/mol (4702.5178 without restraints) Performing minimization step: 4772. Total energy = 4706.2748 kcal/mol (4702.0069 without restraints) Performing minimization step: 4773. Total energy = 4705.7634 kcal/mol (4701.4967 without restraints) Performing minimization step: 4774. Total energy = 4705.2523 kcal/mol (4700.9869 without restraints) Performing minimization step: 4775. Total energy = 4704.7416 kcal/mol (4700.4775 without restraints) Performing minimization step: 4776. Total energy = 4704.2310 kcal/mol (4699.9682 without restraints) Performing minimization step: 4777. Total energy = 4703.7206 kcal/mol (4699.4589 without restraints) Performing minimization step: 4778. Total energy = 4703.2104 kcal/mol (4698.9500 without restraints) Performing minimization step: 4779. Total energy = 4702.7011 kcal/mol (4698.4419 without restraints) Performing minimization step: 4780. Total energy = 4702.1920 kcal/mol (4697.9341 without restraints) Performing minimization step: 4781. Total energy = 4701.6828 kcal/mol (4697.4261 without restraints) Performing minimization step: 4782. Total energy = 4701.1738 kcal/mol (4696.9183 without restraints) Performing minimization step: 4783. Total energy = 4700.6651 kcal/mol (4696.4109 without restraints) Performing minimization step: 4784. Total energy = 4700.1568 kcal/mol (4695.9038 without restraints) Performing minimization step: 4785. Total energy = 4699.6489 kcal/mol (4695.3972 without restraints) Performing minimization step: 4786. Total energy = 4699.1414 kcal/mol (4694.8909 without restraints) Performing minimization step: 4787. Total energy = 4698.6339 kcal/mol (4694.3847 without restraints) Performing minimization step: 4788. Total energy = 4698.1269 kcal/mol (4693.8789 without restraints) Performing minimization step: 4789. Total energy = 4697.6203 kcal/mol (4693.3734 without restraints) Performing minimization step: 4790. Total energy = 4697.1136 kcal/mol (4692.8681 without restraints) Performing minimization step: 4791. Total energy = 4696.6079 kcal/mol (4692.3636 without restraints) Performing minimization step: 4792. Total energy = 4696.1027 kcal/mol (4691.8596 without restraints) Performing minimization step: 4793. Total energy = 4695.5973 kcal/mol (4691.3555 without restraints) Performing minimization step: 4794. Total energy = 4695.0925 kcal/mol (4690.8520 without restraints) Performing minimization step: 4795. Total energy = 4694.5876 kcal/mol (4690.3483 without restraints) Performing minimization step: 4796. Total energy = 4694.0832 kcal/mol (4689.8451 without restraints) Performing minimization step: 4797. Total energy = 4693.5792 kcal/mol (4689.3423 without restraints) Performing minimization step: 4798. Total energy = 4693.0754 kcal/mol (4688.8399 without restraints) Performing minimization step: 4799. Total energy = 4692.5718 kcal/mol (4688.3374 without restraints) Performing minimization step: 4800. Total energy = 4692.0685 kcal/mol (4687.8353 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 4691.5656 kcal/mol (4687.3337 without restraints) Performing minimization step: 4802. Total energy = 4691.0633 kcal/mol (4686.8326 without restraints) Performing minimization step: 4803. Total energy = 4690.5607 kcal/mol (4686.3313 without restraints) Performing minimization step: 4804. Total energy = 4690.0588 kcal/mol (4685.8306 without restraints) Performing minimization step: 4805. Total energy = 4689.5578 kcal/mol (4685.3309 without restraints) Performing minimization step: 4806. Total energy = 4689.0565 kcal/mol (4684.8308 without restraints) Performing minimization step: 4807. Total energy = 4688.5552 kcal/mol (4684.3307 without restraints) Performing minimization step: 4808. Total energy = 4688.0547 kcal/mol (4683.8315 without restraints) Performing minimization step: 4809. Total energy = 4687.5541 kcal/mol (4683.3321 without restraints) Performing minimization step: 4810. Total energy = 4687.0538 kcal/mol (4682.8330 without restraints) Performing minimization step: 4811. Total energy = 4686.5543 kcal/mol (4682.3349 without restraints) Performing minimization step: 4812. Total energy = 4686.0548 kcal/mol (4681.8365 without restraints) Performing minimization step: 4813. Total energy = 4685.5554 kcal/mol (4681.3384 without restraints) Performing minimization step: 4814. Total energy = 4685.0566 kcal/mol (4680.8408 without restraints) Performing minimization step: 4815. Total energy = 4684.5578 kcal/mol (4680.3432 without restraints) Performing minimization step: 4816. Total energy = 4684.0592 kcal/mol (4679.8459 without restraints) Performing minimization step: 4817. Total energy = 4683.5609 kcal/mol (4679.3488 without restraints) Performing minimization step: 4818. Total energy = 4683.0632 kcal/mol (4678.8524 without restraints) Performing minimization step: 4819. Total energy = 4682.5663 kcal/mol (4678.3567 without restraints) Performing minimization step: 4820. Total energy = 4682.0693 kcal/mol (4677.8609 without restraints) Performing minimization step: 4821. Total energy = 4681.5723 kcal/mol (4677.3652 without restraints) Performing minimization step: 4822. Total energy = 4681.0757 kcal/mol (4676.8699 without restraints) Performing minimization step: 4823. Total energy = 4680.5799 kcal/mol (4676.3753 without restraints) Performing minimization step: 4824. Total energy = 4680.0847 kcal/mol (4675.8814 without restraints) Performing minimization step: 4825. Total energy = 4679.5890 kcal/mol (4675.3869 without restraints) Performing minimization step: 4826. Total energy = 4679.0937 kcal/mol (4674.8927 without restraints) Performing minimization step: 4827. Total energy = 4678.5986 kcal/mol (4674.3989 without restraints) Performing minimization step: 4828. Total energy = 4678.1037 kcal/mol (4673.9053 without restraints) Performing minimization step: 4829. Total energy = 4677.6093 kcal/mol (4673.4121 without restraints) Performing minimization step: 4830. Total energy = 4677.1157 kcal/mol (4672.9198 without restraints) Performing minimization step: 4831. Total energy = 4676.6216 kcal/mol (4672.4269 without restraints) Performing minimization step: 4832. Total energy = 4676.1280 kcal/mol (4671.9345 without restraints) Performing minimization step: 4833. Total energy = 4675.6348 kcal/mol (4671.4426 without restraints) Performing minimization step: 4834. Total energy = 4675.1419 kcal/mol (4670.9511 without restraints) Performing minimization step: 4835. Total energy = 4674.6496 kcal/mol (4670.4599 without restraints) Performing minimization step: 4836. Total energy = 4674.1575 kcal/mol (4669.9690 without restraints) Performing minimization step: 4837. Total energy = 4673.6655 kcal/mol (4669.4784 without restraints) Performing minimization step: 4838. Total energy = 4673.1741 kcal/mol (4668.9881 without restraints) Performing minimization step: 4839. Total energy = 4672.6825 kcal/mol (4668.4976 without restraints) Performing minimization step: 4840. Total energy = 4672.1912 kcal/mol (4668.0077 without restraints) Performing minimization step: 4841. Total energy = 4671.7004 kcal/mol (4667.5181 without restraints) Performing minimization step: 4842. Total energy = 4671.2101 kcal/mol (4667.0289 without restraints) Performing minimization step: 4843. Total energy = 4670.7201 kcal/mol (4666.5403 without restraints) Performing minimization step: 4844. Total energy = 4670.2304 kcal/mol (4666.0519 without restraints) Performing minimization step: 4845. Total energy = 4669.7408 kcal/mol (4665.5636 without restraints) Performing minimization step: 4846. Total energy = 4669.2518 kcal/mol (4665.0757 without restraints) Performing minimization step: 4847. Total energy = 4668.7628 kcal/mol (4664.5879 without restraints) Performing minimization step: 4848. Total energy = 4668.2740 kcal/mol (4664.1004 without restraints) Performing minimization step: 4849. Total energy = 4667.7860 kcal/mol (4663.6137 without restraints) Performing minimization step: 4850. Total energy = 4667.2981 kcal/mol (4663.1272 without restraints) Performing minimization step: 4851. Total energy = 4666.8103 kcal/mol (4662.6405 without restraints) Performing minimization step: 4852. Total energy = 4666.3232 kcal/mol (4662.1546 without restraints) Performing minimization step: 4853. Total energy = 4665.8361 kcal/mol (4661.6687 without restraints) Performing minimization step: 4854. Total energy = 4665.3486 kcal/mol (4661.1824 without restraints) Performing minimization step: 4855. Total energy = 4664.8621 kcal/mol (4660.6972 without restraints) Performing minimization step: 4856. Total energy = 4664.3755 kcal/mol (4660.2118 without restraints) Performing minimization step: 4857. Total energy = 4663.8900 kcal/mol (4659.7276 without restraints) Performing minimization step: 4858. Total energy = 4663.4046 kcal/mol (4659.2434 without restraints) Performing minimization step: 4859. Total energy = 4662.9193 kcal/mol (4658.7593 without restraints) Performing minimization step: 4860. Total energy = 4662.4341 kcal/mol (4658.2754 without restraints) Performing minimization step: 4861. Total energy = 4661.9495 kcal/mol (4657.7920 without restraints) Performing minimization step: 4862. Total energy = 4661.4651 kcal/mol (4657.3090 without restraints) Performing minimization step: 4863. Total energy = 4660.9811 kcal/mol (4656.8260 without restraints) Performing minimization step: 4864. Total energy = 4660.4973 kcal/mol (4656.3435 without restraints) Performing minimization step: 4865. Total energy = 4660.0136 kcal/mol (4655.8610 without restraints) Performing minimization step: 4866. Total energy = 4659.5307 kcal/mol (4655.3794 without restraints) Performing minimization step: 4867. Total energy = 4659.0475 kcal/mol (4654.8975 without restraints) Performing minimization step: 4868. Total energy = 4658.5647 kcal/mol (4654.4159 without restraints) Performing minimization step: 4869. Total energy = 4658.0828 kcal/mol (4653.9353 without restraints) Performing minimization step: 4870. Total energy = 4657.6007 kcal/mol (4653.4545 without restraints) Performing minimization step: 4871. Total energy = 4657.1189 kcal/mol (4652.9738 without restraints) Performing minimization step: 4872. Total energy = 4656.6374 kcal/mol (4652.4936 without restraints) Performing minimization step: 4873. Total energy = 4656.1563 kcal/mol (4652.0136 without restraints) Performing minimization step: 4874. Total energy = 4655.6752 kcal/mol (4651.5340 without restraints) Performing minimization step: 4875. Total energy = 4655.1949 kcal/mol (4651.0548 without restraints) Performing minimization step: 4876. Total energy = 4654.7143 kcal/mol (4650.5755 without restraints) Performing minimization step: 4877. Total energy = 4654.2343 kcal/mol (4650.0967 without restraints) Performing minimization step: 4878. Total energy = 4653.7546 kcal/mol (4649.6181 without restraints) Performing minimization step: 4879. Total energy = 4653.2752 kcal/mol (4649.1402 without restraints) Performing minimization step: 4880. Total energy = 4652.7965 kcal/mol (4648.6626 without restraints) Performing minimization step: 4881. Total energy = 4652.3175 kcal/mol (4648.1848 without restraints) Performing minimization step: 4882. Total energy = 4651.8388 kcal/mol (4647.7074 without restraints) Performing minimization step: 4883. Total energy = 4651.3604 kcal/mol (4647.2301 without restraints) Performing minimization step: 4884. Total energy = 4650.8823 kcal/mol (4646.7533 without restraints) Performing minimization step: 4885. Total energy = 4650.4047 kcal/mol (4646.2770 without restraints) Performing minimization step: 4886. Total energy = 4649.9275 kcal/mol (4645.8012 without restraints) Performing minimization step: 4887. Total energy = 4649.4506 kcal/mol (4645.3253 without restraints) Performing minimization step: 4888. Total energy = 4648.9735 kcal/mol (4644.8494 without restraints) Performing minimization step: 4889. Total energy = 4648.4967 kcal/mol (4644.3739 without restraints) Performing minimization step: 4890. Total energy = 4648.0202 kcal/mol (4643.8986 without restraints) Performing minimization step: 4891. Total energy = 4647.5440 kcal/mol (4643.4237 without restraints) Performing minimization step: 4892. Total energy = 4647.0685 kcal/mol (4642.9494 without restraints) Performing minimization step: 4893. Total energy = 4646.5927 kcal/mol (4642.4749 without restraints) Performing minimization step: 4894. Total energy = 4646.1180 kcal/mol (4642.0016 without restraints) Performing minimization step: 4895. Total energy = 4645.6436 kcal/mol (4641.5282 without restraints) Performing minimization step: 4896. Total energy = 4645.1690 kcal/mol (4641.0549 without restraints) Performing minimization step: 4897. Total energy = 4644.6948 kcal/mol (4640.5820 without restraints) Performing minimization step: 4898. Total energy = 4644.2205 kcal/mol (4640.1088 without restraints) Performing minimization step: 4899. Total energy = 4643.7466 kcal/mol (4639.6364 without restraints) Performing minimization step: 4900. Total energy = 4643.2732 kcal/mol (4639.1641 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 4642.8003 kcal/mol (4638.6925 without restraints) Performing minimization step: 4902. Total energy = 4642.3275 kcal/mol (4638.2209 without restraints) Performing minimization step: 4903. Total energy = 4641.8551 kcal/mol (4637.7497 without restraints) Performing minimization step: 4904. Total energy = 4641.3827 kcal/mol (4637.2785 without restraints) Performing minimization step: 4905. Total energy = 4640.9107 kcal/mol (4636.8079 without restraints) Performing minimization step: 4906. Total energy = 4640.4391 kcal/mol (4636.3375 without restraints) Performing minimization step: 4907. Total energy = 4639.9677 kcal/mol (4635.8673 without restraints) Performing minimization step: 4908. Total energy = 4639.4966 kcal/mol (4635.3974 without restraints) Performing minimization step: 4909. Total energy = 4639.0261 kcal/mol (4634.9282 without restraints) Performing minimization step: 4910. Total energy = 4638.5554 kcal/mol (4634.4587 without restraints) Performing minimization step: 4911. Total energy = 4638.0850 kcal/mol (4633.9894 without restraints) Performing minimization step: 4912. Total energy = 4637.6148 kcal/mol (4633.5205 without restraints) Performing minimization step: 4913. Total energy = 4637.1448 kcal/mol (4633.0518 without restraints) Performing minimization step: 4914. Total energy = 4636.6757 kcal/mol (4632.5839 without restraints) Performing minimization step: 4915. Total energy = 4636.2065 kcal/mol (4632.1160 without restraints) Performing minimization step: 4916. Total energy = 4635.7375 kcal/mol (4631.6482 without restraints) Performing minimization step: 4917. Total energy = 4635.2689 kcal/mol (4631.1810 without restraints) Performing minimization step: 4918. Total energy = 4634.8007 kcal/mol (4630.7139 without restraints) Performing minimization step: 4919. Total energy = 4634.3325 kcal/mol (4630.2469 without restraints) Performing minimization step: 4920. Total energy = 4633.8643 kcal/mol (4629.7799 without restraints) Performing minimization step: 4921. Total energy = 4633.3968 kcal/mol (4629.3137 without restraints) Performing minimization step: 4922. Total energy = 4632.9299 kcal/mol (4628.8481 without restraints) Performing minimization step: 4923. Total energy = 4632.4634 kcal/mol (4628.3828 without restraints) Performing minimization step: 4924. Total energy = 4631.9964 kcal/mol (4627.9170 without restraints) Performing minimization step: 4925. Total energy = 4631.5299 kcal/mol (4627.4517 without restraints) Performing minimization step: 4926. Total energy = 4631.0636 kcal/mol (4626.9867 without restraints) Performing minimization step: 4927. Total energy = 4630.5979 kcal/mol (4626.5225 without restraints) Performing minimization step: 4928. Total energy = 4630.1327 kcal/mol (4626.0584 without restraints) Performing minimization step: 4929. Total energy = 4629.6676 kcal/mol (4625.5944 without restraints) Performing minimization step: 4930. Total energy = 4629.2026 kcal/mol (4625.1308 without restraints) Performing minimization step: 4931. Total energy = 4628.7388 kcal/mol (4624.6681 without restraints) Performing minimization step: 4932. Total energy = 4628.2736 kcal/mol (4624.2041 without restraints) Performing minimization step: 4933. Total energy = 4627.8095 kcal/mol (4623.7412 without restraints) Performing minimization step: 4934. Total energy = 4627.3456 kcal/mol (4623.2786 without restraints) Performing minimization step: 4935. Total energy = 4626.8817 kcal/mol (4622.8161 without restraints) Performing minimization step: 4936. Total energy = 4626.4185 kcal/mol (4622.3541 without restraints) Performing minimization step: 4937. Total energy = 4625.9557 kcal/mol (4621.8924 without restraints) Performing minimization step: 4938. Total energy = 4625.4927 kcal/mol (4621.4307 without restraints) Performing minimization step: 4939. Total energy = 4625.0303 kcal/mol (4620.9695 without restraints) Performing minimization step: 4940. Total energy = 4624.5682 kcal/mol (4620.5086 without restraints) Performing minimization step: 4941. Total energy = 4624.1063 kcal/mol (4620.0480 without restraints) Performing minimization step: 4942. Total energy = 4623.6446 kcal/mol (4619.5875 without restraints) Performing minimization step: 4943. Total energy = 4623.1834 kcal/mol (4619.1276 without restraints) Performing minimization step: 4944. Total energy = 4622.7226 kcal/mol (4618.6680 without restraints) Performing minimization step: 4945. Total energy = 4622.2617 kcal/mol (4618.2085 without restraints) Performing minimization step: 4946. Total energy = 4621.8013 kcal/mol (4617.7492 without restraints) Performing minimization step: 4947. Total energy = 4621.3409 kcal/mol (4617.2901 without restraints) Performing minimization step: 4948. Total energy = 4620.8810 kcal/mol (4616.8314 without restraints) Performing minimization step: 4949. Total energy = 4620.4212 kcal/mol (4616.3728 without restraints) Performing minimization step: 4950. Total energy = 4619.9620 kcal/mol (4615.9150 without restraints) Performing minimization step: 4951. Total energy = 4619.5026 kcal/mol (4615.4566 without restraints) Performing minimization step: 4952. Total energy = 4619.0436 kcal/mol (4614.9992 without restraints) Performing minimization step: 4953. Total energy = 4618.5852 kcal/mol (4614.5418 without restraints) Performing minimization step: 4954. Total energy = 4618.1265 kcal/mol (4614.0843 without restraints) Performing minimization step: 4955. Total energy = 4617.6682 kcal/mol (4613.6273 without restraints) Performing minimization step: 4956. Total energy = 4617.2104 kcal/mol (4613.1707 without restraints) Performing minimization step: 4957. Total energy = 4616.7526 kcal/mol (4612.7141 without restraints) Performing minimization step: 4958. Total energy = 4616.2960 kcal/mol (4612.2588 without restraints) Performing minimization step: 4959. Total energy = 4615.8390 kcal/mol (4611.8030 without restraints) Performing minimization step: 4960. Total energy = 4615.3821 kcal/mol (4611.3474 without restraints) Performing minimization step: 4961. Total energy = 4614.9256 kcal/mol (4610.8922 without restraints) Performing minimization step: 4962. Total energy = 4614.4694 kcal/mol (4610.4373 without restraints) Performing minimization step: 4963. Total energy = 4614.0140 kcal/mol (4609.9831 without restraints) Performing minimization step: 4964. Total energy = 4613.5583 kcal/mol (4609.5285 without restraints) Performing minimization step: 4965. Total energy = 4613.1032 kcal/mol (4609.0747 without restraints) Performing minimization step: 4966. Total energy = 4612.6480 kcal/mol (4608.6207 without restraints) Performing minimization step: 4967. Total energy = 4612.1935 kcal/mol (4608.1675 without restraints) Performing minimization step: 4968. Total energy = 4611.7396 kcal/mol (4607.7153 without restraints) Performing minimization step: 4969. Total energy = 4611.2861 kcal/mol (4607.2625 without restraints) Performing minimization step: 4970. Total energy = 4610.8321 kcal/mol (4606.8097 without restraints) Performing minimization step: 4971. Total energy = 4610.3781 kcal/mol (4606.3570 without restraints) Performing minimization step: 4972. Total energy = 4609.9247 kcal/mol (4605.9049 without restraints) Performing minimization step: 4973. Total energy = 4609.4714 kcal/mol (4605.4529 without restraints) Performing minimization step: 4974. Total energy = 4609.0185 kcal/mol (4605.0011 without restraints) Performing minimization step: 4975. Total energy = 4608.5656 kcal/mol (4604.5495 without restraints) Performing minimization step: 4976. Total energy = 4608.1131 kcal/mol (4604.0980 without restraints) Performing minimization step: 4977. Total energy = 4607.6608 kcal/mol (4603.6473 without restraints) Performing minimization step: 4978. Total energy = 4607.2089 kcal/mol (4603.1964 without restraints) Performing minimization step: 4979. Total energy = 4606.7570 kcal/mol (4602.7458 without restraints) Performing minimization step: 4980. Total energy = 4606.3058 kcal/mol (4602.2959 without restraints) Performing minimization step: 4981. Total energy = 4605.8547 kcal/mol (4601.8459 without restraints) Performing minimization step: 4982. Total energy = 4605.4039 kcal/mol (4601.3964 without restraints) Performing minimization step: 4983. Total energy = 4604.9534 kcal/mol (4600.9472 without restraints) Performing minimization step: 4984. Total energy = 4604.5032 kcal/mol (4600.4982 without restraints) Performing minimization step: 4985. Total energy = 4604.0533 kcal/mol (4600.0495 without restraints) Performing minimization step: 4986. Total energy = 4603.6034 kcal/mol (4599.6009 without restraints) Performing minimization step: 4987. Total energy = 4603.1540 kcal/mol (4599.1527 without restraints) Performing minimization step: 4988. Total energy = 4602.7047 kcal/mol (4598.7047 without restraints) Performing minimization step: 4989. Total energy = 4602.2558 kcal/mol (4598.2571 without restraints) Performing minimization step: 4990. Total energy = 4601.8071 kcal/mol (4597.8096 without restraints) Performing minimization step: 4991. Total energy = 4601.3586 kcal/mol (4597.3623 without restraints) Performing minimization step: 4992. Total energy = 4600.9107 kcal/mol (4596.9158 without restraints) Performing minimization step: 4993. Total energy = 4600.4629 kcal/mol (4596.4691 without restraints) Performing minimization step: 4994. Total energy = 4600.0153 kcal/mol (4596.0227 without restraints) Performing minimization step: 4995. Total energy = 4599.5678 kcal/mol (4595.5765 without restraints) Performing minimization step: 4996. Total energy = 4599.1206 kcal/mol (4595.1305 without restraints) Performing minimization step: 4997. Total energy = 4598.6737 kcal/mol (4594.6847 without restraints) Performing minimization step: 4998. Total energy = 4598.2270 kcal/mol (4594.2394 without restraints) Performing minimization step: 4999. Total energy = 4597.7804 kcal/mol (4593.7940 without restraints) Performing minimization step: 5000. Total energy = 4597.3342 kcal/mol (4593.3490 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/7e4cc780/tmp/C15MA1_refx/C15MA1_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to C15MA1_refx.pdb DONE!