data_N
# 
_chem_comp.id                                    N 
_chem_comp.name                                  
;ANY 5'-MONOPHOSPHATE NUCLEOTIDE
;
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C5 H11 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "1-DEOXY-RIBOFURANOSE-5'-PHOSPHATE" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-13 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ROB 
_chem_comp.formula_weight                        214.110 
_chem_comp.one_letter_code                       N 
_chem_comp.three_letter_code                     N 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1G9T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
N OP3    O3P  O 0 1 N Y N N N N 10.761 86.955 65.197 3.772  -0.872 -0.895 OP3    N 1  
N P      P    P 0 1 N N N N N N 10.142 87.086 66.531 2.816  -0.013 0.074  P      N 2  
N OP1    O1P  O 0 1 N N N N N N 10.847 88.090 67.347 2.933  -0.520 1.459  OP1    N 3  
N OP2    O2P  O 0 1 N N N N N N 8.692  87.283 66.512 3.257  1.535  0.030  OP2    N 4  
N "O5'"  O5*  O 0 1 N N N N N N 10.538 85.720 67.176 1.289  -0.150 -0.420 "O5'"  N 5  
N "C5'"  C5*  C 0 1 N N N N N N 9.666  84.781 67.791 0.187  0.412  0.294  "C5'"  N 6  
N "C4'"  C4*  C 0 1 N N R N N N 10.002 83.443 67.242 -1.114 0.098  -0.447 "C4'"  N 7  
N "O4'"  O4*  O 0 1 N N N N N N 11.364 83.072 67.508 -1.366 -1.316 -0.414 "O4'"  N 8  
N "C3'"  C3*  C 0 1 N N S N N N 9.128  82.397 67.841 -2.298 0.790  0.257  "C3'"  N 9  
N "O3'"  O3*  O 0 1 N N N N N N 8.611  81.562 66.790 -2.947 1.700  -0.634 "O3'"  N 10 
N "C2'"  C2*  C 0 1 N N S N N N 10.023 81.630 68.762 -3.249 -0.372 0.632  "C2'"  N 11 
N "O2'"  O2*  O 0 1 N N N N N N 9.798  80.229 68.647 -4.612 -0.012 0.400  "O2'"  N 12 
N "C1'"  C1*  C 0 1 N N N N N N 11.479 81.977 68.419 -2.798 -1.488 -0.344 "C1'"  N 13 
N HOP3   3HOP H 0 0 N N N N N N 10.082 86.927 64.534 4.709  -0.836 -0.656 HOP3   N 14 
N HOP2   2HOP H 0 0 N N N N N N 8.366  87.326 67.403 3.205  1.934  -0.850 HOP2   N 15 
N "H5'"  1H5* H 0 1 N N N N N N 9.806  84.790 68.882 0.147  -0.016 1.296  "H5'"  N 16 
N "H5''" 2H5* H 0 0 N N N N N N 8.615  85.033 67.585 0.313  1.493  0.366  "H5''" N 17 
N "H4'"  H4*  H 0 1 N N N N N N 9.849  83.511 66.155 -1.044 0.439  -1.480 "H4'"  N 18 
N "H3'"  H3*  H 0 1 N N N N N N 8.263  82.806 68.383 -1.958 1.312  1.152  "H3'"  N 19 
N "HO3'" H3T  H 0 0 N Y N N N N 8.497  82.079 66.001 -3.700 2.163  -0.243 "HO3'" N 20 
N "H2'"  H2*  H 0 1 N N N N N N 9.806  81.908 69.804 -3.100 -0.678 1.668  "H2'"  N 21 
N "HO2'" 2HO* H 0 0 N N N N N N 9.748  79.990 67.729 -5.246 -0.708 0.620  "HO2'" N 22 
N "H1'"  H1*  H 0 1 N N N N N N 11.997 81.123 67.957 -3.250 -1.346 -1.326 "H1'"  N 23 
N "H1'2" 2H1* H 0 0 N N N N N N 12.074 82.229 69.309 -3.047 -2.472 0.055  "H1'2" N 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
N OP3   P      SING N N 1  
N OP3   HOP3   SING N N 2  
N P     OP1    DOUB N N 3  
N P     OP2    SING N N 4  
N P     "O5'"  SING N N 5  
N OP2   HOP2   SING N N 6  
N "O5'" "C5'"  SING N N 7  
N "C5'" "C4'"  SING N N 8  
N "C5'" "H5'"  SING N N 9  
N "C5'" "H5''" SING N N 10 
N "C4'" "O4'"  SING N N 11 
N "C4'" "C3'"  SING N N 12 
N "C4'" "H4'"  SING N N 13 
N "O4'" "C1'"  SING N N 14 
N "C3'" "O3'"  SING N N 15 
N "C3'" "C2'"  SING N N 16 
N "C3'" "H3'"  SING N N 17 
N "O3'" "HO3'" SING N N 18 
N "C2'" "O2'"  SING N N 19 
N "C2'" "C1'"  SING N N 20 
N "C2'" "H2'"  SING N N 21 
N "O2'" "HO2'" SING N N 22 
N "C1'" "H1'"  SING N N 23 
N "C1'" "H1'2" SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
N SMILES           ACDLabs              10.04 "O=P(OCC1OCC(O)C1O)(O)O"                                                                     
N InChI            InChI                1.03  "InChI=1S/C5H11O7P/c6-3-1-11-4(5(3)7)2-12-13(8,9)10/h3-7H,1-2H2,(H2,8,9,10)/t3-,4+,5-/m0/s1" 
N InChIKey         InChI                1.03  CYZZKTRFOOKUMT-LMVFSUKVSA-N                                                                  
N SMILES_CANONICAL CACTVS               3.385 "O[C@H]1CO[C@H](CO[P](O)(O)=O)[C@H]1O"                                                       
N SMILES           CACTVS               3.385 "O[CH]1CO[CH](CO[P](O)(O)=O)[CH]1O"                                                          
N SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "C1[C@@H]([C@@H]([C@H](O1)COP(=O)(O)O)O)O"                                                   
N SMILES           "OpenEye OEToolkits" 1.7.5 "C1C(C(C(O1)COP(=O)(O)O)O)O"                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
N "SYSTEMATIC NAME" ACDLabs              10.04 1,4-anhydro-5-O-phosphono-D-ribitol                                
N "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4S)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
N "Create component"   1999-07-13 RCSB 
N "Modify descriptor"  2011-06-04 RCSB 
N "Modify descriptor"  2012-01-05 RCSB 
N "Modify coordinates" 2012-01-05 RCSB 
N "Modify synonyms"    2020-06-05 PDBE 
N "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      N 
_pdbx_chem_comp_synonyms.name         "1-DEOXY-RIBOFURANOSE-5'-PHOSPHATE" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            N 
_pdbx_chem_comp_pcm.modified_residue_id                GLU 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Nucleotide monophosphate" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               "C3'" 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OE2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
