============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1.pdb ============================================================================= Error: recognition of atom ATOM 19 'H5' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 20 'HO5 DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 24 1H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 25 2H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 47 C5M DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 51 HN3 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 52 1HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 53 2HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 54 3HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 81 'H5' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 85 1H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 86 2H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 114 'H5' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 118 1H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 119 2H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 144 'H5' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 148 1H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 149 2H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 176 'H5' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 180 1H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 181 2H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 203 C5M DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 207 HN3 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 208 1HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 209 2HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 210 3HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 238 'H5' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 242 1H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 243 2H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 270 'H5' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 274 1H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 275 2H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 302 'H5' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 306 1H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 307 2H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 329 C5M DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 333 HN3 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 334 1HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 335 2HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 336 3HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 358 C5M DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 362 HN3 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 363 1HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 364 2HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 365 3HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 390 'H5' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 394 1H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 395 2H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 420 'H5' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 424 1H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 425 2H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 450 'H5' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 454 1H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 455 2H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 483 'H5' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 487 1H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 488 2H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 515 'H5' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 519 1H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 520 2H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 547 'H5' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 551 1H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 552 2H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 580 'H5' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 584 1H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 585 2H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 612 'H5' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 616 1H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 617 2H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 642 'H5' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 646 1H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 647 2H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 675 'H5' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 679 1H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 680 2H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 705 'H5' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 709 1H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 710 2H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 732 C5M DT A 24 ... failed. Atom erased. Error: recognition of atom ATOM 736 HN3 DT A 24 ... failed. Atom erased. Error: recognition of atom ATOM 737 1HM5 DT A 24 ... failed. Atom erased. Error: recognition of atom ATOM 738 2HM5 DT A 24 ... failed. Atom erased. Error: recognition of atom ATOM 739 3HM5 DT A 24 ... failed. Atom erased. Error: recognition of atom ATOM 764 'H5' DC A 25 ... failed. Atom erased. Error: recognition of atom ATOM 768 1H2' DC A 25 ... failed. Atom erased. Error: recognition of atom ATOM 769 2H2' DC A 25 ... failed. Atom erased. Error: recognition of atom ATOM 791 C5M DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 795 HN3 DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 796 1HM5 DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 797 2HM5 DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 798 3HM5 DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 820 C5M DT A 27 ... failed. Atom erased. Error: recognition of atom ATOM 824 HN3 DT A 27 ... failed. Atom erased. Error: recognition of atom ATOM 825 1HM5 DT A 27 ... failed. Atom erased. Error: recognition of atom ATOM 826 2HM5 DT A 27 ... failed. Atom erased. Error: recognition of atom ATOM 827 3HM5 DT A 27 ... failed. Atom erased. Error: recognition of atom ATOM 854 'H5' DA A 28 ... failed. Atom erased. Error: recognition of atom ATOM 858 1H2' DA A 28 ... failed. Atom erased. Error: recognition of atom ATOM 859 2H2' DA A 28 ... failed. Atom erased. Error: recognition of atom ATOM 887 'H5' DG A 29 ... failed. Atom erased. Error: recognition of atom ATOM 891 1H2' DG A 29 ... failed. Atom erased. Error: recognition of atom ATOM 892 2H2' DG A 29 ... failed. Atom erased. Error: recognition of atom ATOM 914 C5M DT A 30 ... failed. Atom erased. Error: recognition of atom ATOM 918 HN3 DT A 30 ... failed. Atom erased. Error: recognition of atom ATOM 919 1HM5 DT A 30 ... failed. Atom erased. Error: recognition of atom ATOM 920 2HM5 DT A 30 ... failed. Atom erased. Error: recognition of atom ATOM 921 3HM5 DT A 30 ... failed. Atom erased. Error: recognition of atom ATOM 946 'H5' DC A 31 ... failed. Atom erased. Error: recognition of atom ATOM 950 1H2' DC A 31 ... failed. Atom erased. Error: recognition of atom ATOM 951 2H2' DC A 31 ... failed. Atom erased. Error: recognition of atom ATOM 976 'H5' DC A 32 ... failed. Atom erased. Error: recognition of atom ATOM 980 1H2' DC A 32 ... failed. Atom erased. Error: recognition of atom ATOM 981 2H2' DC A 32 ... failed. Atom erased. Error: recognition of atom ATOM 1006 'H5' DC A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1010 1H2' DC A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1011 2H2' DC A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1033 C5M DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1037 HN3 DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1038 1HM5 DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1039 2HM5 DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1040 3HM5 DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1065 'H5' DC A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1069 1H2' DC A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1070 2H2' DC A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1097 'H5' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1101 1H2' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1102 2H2' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1124 C5M DT A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1128 HN3 DT A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1129 1HM5 DT A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1130 2HM5 DT A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1131 3HM5 DT A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1153 C5M DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1157 HN3 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1158 1HM5 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1159 2HM5 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1160 3HM5 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1185 'H5' DC A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1189 1H2' DC A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1190 2H2' DC A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1218 'H5' DG A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1222 1H2' DG A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1223 2H2' DG A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1248 'H5' DC A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1252 1H2' DC A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1253 2H2' DC A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1278 'H5' DC A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1282 1H2' DC A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1283 2H2' DC A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1308 'H5' DC A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1312 1H2' DC A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1313 2H2' DC A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1335 C5M DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1339 HN3 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1340 1HM5 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1341 2HM5 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1342 3HM5 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1370 'H5' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1374 1H2' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1375 2H2' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1400 'H5' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1404 1H2' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1405 2H2' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1427 C5M DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1431 HN3 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1432 1HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1433 2HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1434 3HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1459 'H5' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1463 1H2' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1464 2H2' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1491 'H5' DA A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1495 1H2' DA A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1496 2H2' DA A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1521 'H5' DC A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1525 1H2' DC A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1526 2H2' DC A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1548 C5M DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1552 HN3 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1553 1HM5 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1554 2HM5 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1555 3HM5 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1577 C5M DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1581 HN3 DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1582 1HM5 DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1583 2HM5 DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1584 3HM5 DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1609 'H5' DC A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1613 1H2' DC A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1614 2H2' DC A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1641 'H5' DA A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1645 1H2' DA A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1646 2H2' DA A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1673 'H5' DA A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1677 1H2' DA A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1678 2H2' DA A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1700 C5M DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1704 HN3 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1705 1HM5 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1706 2HM5 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1707 3HM5 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1734 'H5' DA A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1738 1H2' DA A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1739 2H2' DA A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1761 C5M DT A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1765 HN3 DT A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1766 1HM5 DT A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1767 2HM5 DT A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1768 3HM5 DT A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1793 'H5' DC A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1797 1H2' DC A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1798 2H2' DC A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1825 'H5' DA A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1829 1H2' DA A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1830 2H2' DA A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1852 C5M DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1856 HN3 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1857 1HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1858 2HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1859 3HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1887 'H5' DG A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1891 1H2' DG A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1892 2H2' DG A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1920 'H5' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1924 1H2' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1925 2H2' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1953 'H5' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1957 1H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1958 2H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1980 C5M DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 1984 HN3 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 1985 1HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 1986 2HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 1987 3HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2012 'H5' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2016 1H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2017 2H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2045 'H5' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2049 1H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2050 2H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2077 'H5' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2081 1H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2082 2H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2107 'H5' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2111 1H2' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2112 2H2' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2140 'H5' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2144 1H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2145 2H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2172 'H5' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2176 1H2' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2177 2H2' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2205 'H5' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2209 1H2' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2210 2H2' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2238 'H5' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2242 1H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2243 2H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2265 C5M DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2269 HN3 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2270 1HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2271 2HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2272 3HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2297 'H5' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2301 1H2' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2302 2H2' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2324 C5M DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2328 HN3 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2329 1HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2330 2HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2331 3HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2358 'H5' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2362 1H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2363 2H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2391 'H5' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2395 1H2' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2396 2H2' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2423 'H5' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2427 1H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2428 2H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2455 'H5' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2459 1H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2460 2H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2482 C5M DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2486 HN3 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2487 1HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2488 2HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2489 3HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2516 'H5' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2520 1H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2521 2H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2546 'H5' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2550 1H2' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2551 2H2' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2576 'H5' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2580 1H2' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2581 2H2' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2608 'H5' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2612 1H2' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2613 2H2' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2641 'H5' DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2642 'HO3 DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2646 1H2' DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2647 2H2' DG A 86 ... failed. Atom erased. Missing atom added: HETATM 1 P DA A 1 0.219 0.723 -2.504 1.00 0.00 P Missing atom added: HETATM 24 H5'2 DA A 1 1.799 -0.850 -0.590 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 1 2.161 -0.203 3.773 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 1 0.166 -0.241 3.889 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 2 0.230 -4.272 4.492 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 2 -3.575 -3.279 6.774 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 2 -3.343 -4.885 7.454 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 2 -6.957 -1.137 4.820 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 2 -3.709 -1.961 1.693 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 2 -3.638 -0.955 1.280 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 2 -4.407 -2.549 1.095 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 2 -2.726 -2.432 1.665 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 3 -3.808 -8.107 7.345 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 3 -7.592 -6.987 9.281 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 3 -8.414 -7.166 7.467 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 4 -9.331 -10.822 7.919 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 4 -13.390 -9.185 7.394 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 4 -13.148 -9.588 5.450 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 5 -14.216 -13.410 4.925 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 5 -16.886 -11.847 1.881 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 5 -15.316 -11.970 0.650 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 6 -16.800 -15.477 -0.369 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 6 -18.040 -14.173 -4.371 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 6 -16.122 -14.530 -4.807 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 7 -16.846 -18.131 -5.644 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 7 -13.153 -16.449 -7.980 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 7 -13.568 -17.654 -9.193 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 7 -9.675 -14.415 -5.850 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 7 -11.923 -17.224 -2.971 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 7 -11.992 -16.506 -2.154 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 7 -11.041 -17.851 -2.828 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 7 -12.813 -17.852 -2.977 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 8 -13.030 -20.423 -10.803 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 8 -9.371 -19.321 -12.938 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 8 -8.531 -20.035 -11.270 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 9 -8.285 -23.424 -12.946 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 9 -4.063 -22.277 -12.952 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 9 -4.008 -23.110 -11.135 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 10 -3.056 -26.744 -12.206 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 10 0.454 -25.856 -9.821 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 10 -0.586 -26.568 -8.269 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 11 1.133 -30.107 -8.743 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 11 0.706 -28.921 -4.269 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 11 1.635 -30.386 -3.975 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 11 -2.988 -28.237 -2.383 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 11 -3.809 -28.657 -6.896 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 11 -4.614 -27.916 -6.927 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 11 -4.253 -29.653 -6.787 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 11 -3.262 -28.621 -7.843 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 12 2.789 -34.256 -4.284 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 12 0.020 -33.721 -0.837 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 12 0.699 -35.209 -0.189 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 12 -3.848 -31.980 -0.145 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 12 -3.118 -32.277 -4.646 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 12 -3.320 -31.235 -4.922 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 12 -4.050 -32.849 -4.754 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 12 -2.383 -32.684 -5.351 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 13 0.515 -39.085 -0.508 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 13 -2.126 -38.864 3.119 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 13 -3.625 -38.573 1.828 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 14 -4.380 -42.611 1.893 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 14 -8.253 -42.319 3.975 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 14 -8.923 -42.015 2.116 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 15 -9.173 -46.449 1.675 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 15 -13.461 -45.880 1.675 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 15 -13.177 -45.437 -0.253 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 16 -13.528 -49.194 -1.898 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 16 -17.001 -47.467 -3.843 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 16 -15.726 -46.803 -5.232 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 17 -16.146 -50.302 -7.375 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 17 -18.360 -48.066 -10.286 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 17 -16.572 -47.577 -11.034 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 18 -13.820 -49.302 -12.452 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 18 -16.072 -46.248 -15.448 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 18 -14.193 -45.565 -15.440 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 19 -12.572 -47.717 -18.526 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 19 -11.316 -43.762 -19.871 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 19 -9.679 -44.023 -18.753 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 20 -7.012 -45.002 -19.886 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 20 -5.592 -41.413 -21.135 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 20 -4.486 -42.322 -19.739 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 21 -1.846 -46.160 -20.104 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 21 1.851 -43.702 -18.159 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 21 0.597 -42.181 -17.826 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 22 -0.935 -44.474 -13.460 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 22 0.737 -47.150 -10.606 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 22 2.196 -47.283 -11.966 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 23 1.605 -43.150 -9.076 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 23 -0.907 -44.532 -8.379 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 23 0.084 -45.552 -6.974 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 24 -0.288 -39.808 -6.875 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 24 -0.851 -39.598 -9.848 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 24 -0.973 -37.844 -9.910 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 24 -2.803 -42.524 -12.620 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 24 -3.871 -43.106 -8.186 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 24 -3.819 -44.197 -8.175 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 24 -4.905 -42.800 -8.367 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 24 -3.553 -42.725 -7.213 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 25 -3.358 -35.086 -9.246 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 25 -4.802 -34.478 -13.253 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 25 -5.911 -36.082 -12.814 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 26 -8.469 -33.023 -11.817 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 26 -11.253 -36.042 -14.028 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 26 -12.389 -34.700 -13.964 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 26 -11.199 -40.329 -12.730 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 26 -8.301 -38.086 -10.051 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 26 -7.443 -38.722 -10.230 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 26 -8.832 -38.407 -9.162 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 26 -7.990 -37.053 -9.951 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 27 -14.716 -33.051 -12.159 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 27 -15.996 -37.570 -11.264 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 27 -17.607 -36.899 -11.042 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 27 -13.706 -40.805 -9.788 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 27 -11.445 -36.949 -8.816 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 27 -10.468 -37.260 -9.203 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 27 -11.483 -37.177 -7.743 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 27 -11.539 -35.864 -8.942 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 28 -19.177 -35.545 -7.971 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 28 -19.120 -39.341 -5.802 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 28 -17.743 -38.433 -4.673 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 29 -20.934 -37.271 -2.335 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 29 -16.869 -36.703 -0.949 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 29 -18.172 -35.364 -0.236 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 30 -21.273 -40.595 2.379 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 30 -17.654 -42.572 3.892 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 30 -18.674 -43.074 5.234 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 30 -13.561 -41.411 4.284 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 30 -15.792 -38.112 1.967 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 30 -15.188 -38.123 1.060 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 30 -15.415 -37.345 2.646 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 30 -16.827 -37.889 1.710 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 31 -18.546 -40.099 7.538 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 31 -15.197 -42.324 9.515 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 31 -14.913 -40.348 9.399 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 32 -15.130 -39.217 12.748 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 32 -11.079 -37.422 12.586 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 32 -12.136 -35.859 11.927 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 33 -12.038 -34.754 15.822 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 33 -9.583 -31.153 15.236 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 33 -11.357 -30.298 14.894 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 34 -11.645 -29.595 18.593 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 34 -13.790 -26.325 15.905 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 34 -13.456 -25.226 17.237 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 34 -17.489 -26.893 13.910 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 34 -15.915 -31.005 15.168 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 34 -16.000 -31.489 14.198 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 34 -16.813 -31.199 15.755 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 34 -15.046 -31.391 15.695 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 35 -14.218 -23.727 20.216 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 35 -17.104 -21.055 18.151 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 35 -18.442 -22.432 18.707 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 36 -19.068 -21.124 23.276 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 36 -17.763 -17.791 20.820 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 36 -19.089 -18.997 19.934 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 37 -22.395 -16.451 22.308 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 37 -24.179 -18.760 23.491 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 37 -25.883 -18.680 23.058 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 37 -26.965 -23.035 20.243 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 37 -23.039 -23.152 22.700 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 37 -22.519 -23.862 22.064 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 37 -23.520 -23.673 23.524 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 37 -22.338 -22.418 23.086 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 38 -26.633 -13.277 19.408 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 38 -28.011 -15.234 15.542 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 38 -29.332 -14.090 15.743 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 38 -28.381 -19.477 15.415 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 38 -24.680 -18.612 18.027 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 38 -23.994 -19.246 17.473 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 38 -25.075 -19.151 18.884 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 38 -24.168 -17.714 18.359 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 39 -32.019 -13.367 19.512 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 39 -35.512 -15.628 17.665 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 39 -34.904 -17.258 18.650 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 40 -37.410 -16.827 21.581 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 40 -38.216 -21.032 19.948 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 40 -36.859 -21.710 21.251 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 41 -40.471 -22.236 23.019 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 41 -38.497 -26.381 21.692 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 41 -37.402 -26.360 23.365 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 42 -40.296 -28.925 25.085 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 42 -37.971 -32.453 25.640 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 42 -37.276 -31.465 27.232 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 43 -40.778 -31.584 30.815 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 43 -36.804 -33.598 29.154 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 43 -35.733 -32.821 30.654 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 44 -36.950 -34.742 34.340 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 44 -36.975 -30.099 36.374 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 44 -36.093 -30.741 37.754 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 44 -40.194 -26.986 35.377 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 44 -41.888 -31.268 35.875 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 44 -42.577 -31.214 35.029 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 44 -42.425 -31.003 36.790 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 44 -41.516 -32.291 35.966 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 45 -36.715 -32.060 41.312 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 45 -35.783 -28.957 43.880 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 45 -36.817 -27.921 42.518 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 46 -37.647 -29.865 45.236 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 46 -38.954 -32.065 48.553 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 46 -40.183 -30.777 49.462 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 47 -41.122 -33.990 47.163 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 47 -39.991 -36.324 43.439 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 47 -38.612 -36.744 44.447 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 47 -42.142 -32.878 40.902 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 47 -41.258 -36.877 38.803 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 47 -40.529 -36.464 38.108 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 47 -42.228 -36.953 38.313 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 47 -40.935 -37.865 39.125 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 48 -34.836 -33.980 46.967 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 48 -34.247 -30.593 44.175 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 48 -32.922 -29.921 45.513 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 49 -32.366 -32.002 43.503 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 49 -28.162 -34.067 43.613 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 49 -29.574 -35.354 43.022 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 50 -27.674 -34.163 37.537 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 50 -24.467 -31.752 35.884 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 50 -23.930 -31.616 37.805 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 51 -21.481 -35.240 37.145 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 51 -19.293 -32.783 40.565 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 51 -17.981 -33.930 40.327 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 51 -21.156 -31.214 44.058 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 51 -24.475 -33.028 41.483 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 51 -25.158 -32.184 41.542 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 51 -24.727 -33.760 42.250 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 51 -24.545 -33.489 40.501 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 52 -16.311 -37.090 40.680 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 52 -18.915 -37.735 42.869 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 52 -18.717 -37.639 44.614 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 52 -21.852 -34.930 46.653 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 52 -22.711 -35.704 42.160 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 52 -23.276 -34.793 41.921 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 52 -23.431 -36.492 42.429 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 52 -22.181 -36.024 41.253 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 53 -16.270 -38.745 47.055 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 53 -14.784 -40.468 50.423 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 53 -16.611 -39.764 50.825 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 54 -19.946 -43.324 47.273 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 54 -20.610 -44.731 51.904 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 54 -20.517 -42.948 52.804 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 55 -25.728 -41.845 50.833 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 55 -25.496 -40.163 53.246 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 55 -25.899 -38.663 51.988 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 56 -30.228 -38.154 51.931 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 56 -27.012 -36.496 55.475 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 56 -28.129 -35.213 55.926 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 56 -22.825 -36.139 55.757 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 56 -24.061 -36.454 51.364 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 56 -23.429 -37.289 51.105 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 56 -23.568 -35.515 51.155 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 56 -25.009 -36.514 50.854 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 57 -29.220 -31.548 55.145 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 57 -25.097 -30.193 56.664 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 57 -24.482 -30.254 54.762 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 58 -24.518 -26.833 53.718 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 58 -23.111 -29.003 49.532 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 58 -22.556 -27.387 49.114 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 58 -26.080 -31.021 47.059 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 58 -27.857 -31.177 51.226 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 58 -27.975 -32.268 51.261 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 58 -28.814 -30.737 50.912 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 58 -27.635 -30.824 52.242 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 59 -26.947 -23.799 51.684 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 59 -29.155 -25.839 48.714 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 59 -29.900 -24.011 49.031 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 60 -27.798 -22.604 43.866 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 60 -26.294 -24.433 41.850 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 60 -28.192 -24.836 41.369 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 61 -25.836 -20.996 40.580 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 61 -28.192 -20.447 37.201 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 61 -28.636 -21.816 36.189 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 61 -32.954 -24.478 38.793 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 61 -33.150 -20.147 37.406 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 61 -33.742 -19.794 38.247 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 61 -33.807 -20.393 36.572 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 61 -32.450 -19.372 37.101 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 62 -24.892 -26.362 35.480 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 62 -25.508 -29.318 35.437 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 62 -26.756 -28.816 33.957 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 63 -24.304 -29.520 30.794 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 63 -26.784 -32.810 29.437 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 63 -27.747 -31.309 28.533 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 64 -25.857 -32.198 25.457 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 64 -29.561 -33.326 23.347 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 64 -29.470 -31.468 22.616 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 65 -24.561 -33.251 22.641 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 65 -22.660 -34.307 20.425 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 65 -22.146 -32.811 19.657 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 65 -17.505 -31.658 21.293 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 65 -18.999 -35.472 23.429 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 65 -18.567 -35.271 24.406 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 65 -18.323 -36.098 22.849 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 65 -19.954 -35.978 23.547 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 66 -26.159 -31.525 20.897 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 66 -30.076 -29.907 18.417 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 66 -29.520 -28.010 18.717 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 67 -29.275 -29.938 14.896 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 67 -33.512 -29.189 14.103 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 67 -32.743 -27.399 13.655 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 68 -32.093 -26.807 9.970 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 68 -32.445 -22.898 9.416 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 68 -30.524 -22.848 9.969 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 69 -28.710 -26.588 5.970 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 69 -28.961 -29.684 9.940 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 69 -28.178 -30.981 8.636 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 70 -27.559 -26.968 10.093 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 70 -26.307 -22.356 10.906 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 70 -24.395 -22.932 10.799 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 71 -22.732 -21.982 7.036 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 71 -19.662 -20.060 9.535 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 71 -18.701 -21.808 9.402 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 72 -16.488 -21.067 6.058 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 72 -13.557 -22.127 9.170 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 72 -13.944 -24.078 8.968 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 73 -10.673 -23.473 7.024 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 73 -11.075 -27.648 7.213 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 73 -10.162 -26.936 5.583 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 74 -6.638 -23.487 10.186 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 74 -6.069 -26.559 10.279 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 74 -5.057 -27.169 11.582 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 74 -7.589 -30.775 13.742 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 74 -9.139 -29.238 9.667 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 74 -10.174 -29.483 9.851 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 74 -8.638 -30.046 9.151 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 74 -9.055 -28.318 9.108 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 75 -5.694 -22.940 14.256 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 75 -4.613 -19.869 11.382 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 75 -5.764 -21.322 10.635 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 76 -10.780 -20.601 11.203 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 76 -12.213 -24.567 12.417 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 76 -13.814 -23.877 12.185 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 76 -10.029 -28.159 13.795 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 76 -9.349 -24.214 16.008 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 76 -8.257 -24.213 16.021 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 76 -9.718 -24.649 16.941 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 76 -9.706 -23.186 15.930 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 77 -13.804 -18.815 13.845 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 77 -13.688 -14.723 11.668 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 77 -15.608 -14.963 11.167 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 78 -16.944 -12.884 14.349 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 78 -18.724 -10.410 11.033 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 78 -20.249 -11.701 10.983 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 79 -22.947 -12.864 13.381 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 79 -25.558 -11.644 10.030 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 79 -26.190 -13.465 10.557 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 80 -29.376 -12.206 12.077 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 80 -31.098 -14.530 8.864 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 80 -31.137 -15.951 10.269 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 81 -34.671 -12.465 11.504 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 81 -35.225 -16.765 9.074 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 81 -36.939 -16.437 8.855 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 81 -32.916 -20.593 9.550 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 81 -33.192 -18.138 13.450 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 81 -32.136 -18.206 13.730 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 81 -33.744 -18.933 13.967 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 81 -33.581 -17.171 13.785 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 82 -39.318 -18.019 10.770 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 82 -40.461 -19.535 7.165 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 82 -40.023 -20.952 8.506 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 83 -43.106 -22.620 9.807 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 83 -40.850 -26.487 9.713 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 83 -40.616 -26.091 11.658 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 84 -44.825 -28.012 11.653 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 84 -42.537 -31.379 13.512 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 84 -42.682 -30.379 15.237 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 85 -47.458 -32.136 14.133 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 85 -45.544 -36.005 16.173 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 85 -45.487 -35.045 17.926 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 86 -48.829 -35.697 20.168 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 86 -46.756 -34.757 24.117 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 86 -47.168 -32.825 23.806 1.00 0.00 H Number of atoms: 2717 Number of residues: 86 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. A 1 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. A 1 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. A 1 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. A 1 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. A 1 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2927 Number of angles built: 5320 Number of dihedrals built: 7943 Number of impropers built: 572 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 3681439 Number of van der Waals pairs: 337579 Number of H-bonds built: 40 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 8 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 284236.0972 kcal/mol (282676.4951 without restraints) Performing minimization step: 2. Total energy = 271594.6443 kcal/mol (270160.4841 without restraints) Performing minimization step: 3. Total energy = 259964.9121 kcal/mol (258644.3397 without restraints) Performing minimization step: 4. Total energy = 249251.3954 kcal/mol (248033.6994 without restraints) Performing minimization step: 5. Total energy = 239367.7796 kcal/mol (238243.2775 without restraints) Performing minimization step: 6. Total energy = 230236.0333 kcal/mol (229195.9708 without restraints) Performing minimization step: 7. Total energy = 221785.6036 kcal/mol (220822.0652 without restraints) Performing minimization step: 8. Total energy = 213952.6986 kcal/mol (213058.5274 without restraints) Performing minimization step: 9. Total energy = 206679.6477 kcal/mol (205848.3743 without restraints) Performing minimization step: 10. Total energy = 199914.3304 kcal/mol (199140.1093 without restraints) Performing minimization step: 11. Total energy = 193609.6636 kcal/mol (192887.2157 without restraints) Performing minimization step: 12. Total energy = 187723.1402 kcal/mol (187047.7010 without restraints) Performing minimization step: 13. Total energy = 182216.4121 kcal/mol (181583.6851 without restraints) Performing minimization step: 14. Total energy = 177054.9116 kcal/mol (176461.0255 without restraints) Performing minimization step: 15. Total energy = 172207.5054 kcal/mol (171648.9752 without restraints) Performing minimization step: 16. Total energy = 167646.1786 kcal/mol (167119.8698 without restraints) Performing minimization step: 17. Total energy = 163345.7438 kcal/mol (162848.8394 without restraints) Performing minimization step: 18. Total energy = 159283.5720 kcal/mol (158813.5424 without restraints) Performing minimization step: 19. Total energy = 155439.3475 kcal/mol (154993.9221 without restraints) Performing minimization step: 20. Total energy = 151794.8382 kcal/mol (151371.9797 without restraints) Performing minimization step: 21. Total energy = 148333.6866 kcal/mol (147931.5675 without restraints) Performing minimization step: 22. Total energy = 145041.2164 kcal/mol (144658.1968 without restraints) Performing minimization step: 23. Total energy = 141904.2571 kcal/mol (141538.8652 without restraints) Performing minimization step: 24. Total energy = 138910.9816 kcal/mol (138561.8951 without restraints) Performing minimization step: 25. Total energy = 136050.7606 kcal/mol (135716.7907 without restraints) Performing minimization step: 26. Total energy = 133314.0304 kcal/mol (132994.1067 without restraints) Performing minimization step: 27. Total energy = 130692.1737 kcal/mol (130385.3309 without restraints) Performing minimization step: 28. Total energy = 128177.4139 kcal/mol (127882.7802 without restraints) Performing minimization step: 29. Total energy = 125762.7188 kcal/mol (125479.5051 without restraints) Performing minimization step: 30. Total energy = 123441.7166 kcal/mol (123169.2069 without restraints) Performing minimization step: 31. Total energy = 121208.6209 kcal/mol (120946.1644 without restraints) Performing minimization step: 32. Total energy = 119058.1644 kcal/mol (118805.1679 without restraints) Performing minimization step: 33. Total energy = 116985.5407 kcal/mol (116741.4623 without restraints) Performing minimization step: 34. Total energy = 114986.3528 kcal/mol (114750.6959 without restraints) Performing minimization step: 35. Total energy = 113056.5681 kcal/mol (112828.8770 without restraints) Performing minimization step: 36. Total energy = 111192.4785 kcal/mol (110972.3333 without restraints) Performing minimization step: 37. Total energy = 109390.6660 kcal/mol (109177.6792 without restraints) Performing minimization step: 38. Total energy = 107647.9722 kcal/mol (107441.7855 without restraints) Performing minimization step: 39. Total energy = 105961.4716 kcal/mol (105761.7525 without restraints) Performing minimization step: 40. Total energy = 104328.4481 kcal/mol (104134.8876 without restraints) Performing minimization step: 41. Total energy = 102746.3741 kcal/mol (102558.6844 without restraints) Performing minimization step: 42. Total energy = 101212.8931 kcal/mol (101030.8056 without restraints) Performing minimization step: 43. Total energy = 99725.8031 kcal/mol (99549.0665 without restraints) Performing minimization step: 44. Total energy = 98283.0431 kcal/mol (98111.4219 without restraints) Performing minimization step: 45. Total energy = 96882.6801 kcal/mol (96715.9534 without restraints) Performing minimization step: 46. Total energy = 95522.8988 kcal/mol (95360.8589 without restraints) Performing minimization step: 47. Total energy = 94201.9904 kcal/mol (94044.4416 without restraints) Performing minimization step: 48. Total energy = 92918.3457 kcal/mol (92765.1037 without restraints) Performing minimization step: 49. Total energy = 91670.4469 kcal/mol (91521.3375 without restraints) Performing minimization step: 50. Total energy = 90456.8596 kcal/mol (90311.7183 without restraints) Performing minimization step: 51. Total energy = 89276.2272 kcal/mol (89134.8982 without restraints) Performing minimization step: 52. Total energy = 88127.2658 kcal/mol (87989.6019 without restraints) Performing minimization step: 53. Total energy = 87008.7586 kcal/mol (86874.6198 without restraints) Performing minimization step: 54. Total energy = 85919.5511 kcal/mol (85788.8046 without restraints) Performing minimization step: 55. Total energy = 84858.5472 kcal/mol (84731.0670 without restraints) Performing minimization step: 56. Total energy = 83824.7056 kcal/mol (83700.3721 without restraints) Performing minimization step: 57. Total energy = 82817.0366 kcal/mol (82695.7354 without restraints) Performing minimization step: 58. Total energy = 81834.5971 kcal/mol (81716.2198 without restraints) Performing minimization step: 59. Total energy = 80876.4900 kcal/mol (80760.9334 without restraints) Performing minimization step: 60. Total energy = 79941.8605 kcal/mol (79829.0261 without restraints) Performing minimization step: 61. Total energy = 79029.8940 kcal/mol (78919.6878 without restraints) Performing minimization step: 62. Total energy = 78139.8120 kcal/mol (78032.1444 without restraints) Performing minimization step: 63. Total energy = 77270.8733 kcal/mol (77165.6587 without restraints) Performing minimization step: 64. Total energy = 76422.3693 kcal/mol (76319.5259 without restraints) Performing minimization step: 65. Total energy = 75593.6223 kcal/mol (75493.0721 without restraints) Performing minimization step: 66. Total energy = 74783.9851 kcal/mol (74685.6534 without restraints) Performing minimization step: 67. Total energy = 73992.8393 kcal/mol (73896.6546 without restraints) Performing minimization step: 68. Total energy = 73219.5924 kcal/mol (73125.4863 without restraints) Performing minimization step: 69. Total energy = 72463.6774 kcal/mol (72371.5845 without restraints) Performing minimization step: 70. Total energy = 71724.5514 kcal/mol (71634.4090 without restraints) Performing minimization step: 71. Total energy = 71001.6942 kcal/mol (70913.4421 without restraints) Performing minimization step: 72. Total energy = 70294.6071 kcal/mol (70208.1878 without restraints) Performing minimization step: 73. Total energy = 69602.8121 kcal/mol (69518.1702 without restraints) Performing minimization step: 74. Total energy = 68925.8503 kcal/mol (68842.9329 without restraints) Performing minimization step: 75. Total energy = 68263.2813 kcal/mol (68182.0373 without restraints) Performing minimization step: 76. Total energy = 67614.6827 kcal/mol (67535.0633 without restraints) Performing minimization step: 77. Total energy = 66979.6479 kcal/mol (66901.6062 without restraints) Performing minimization step: 78. Total energy = 66357.7873 kcal/mol (66281.2780 without restraints) Performing minimization step: 79. Total energy = 65748.7250 kcal/mol (65673.7048 without restraints) Performing minimization step: 80. Total energy = 65152.1003 kcal/mol (65078.5273 without restraints) Performing minimization step: 81. Total energy = 64567.5657 kcal/mol (64495.3997 without restraints) Performing minimization step: 82. Total energy = 63994.7872 kcal/mol (63923.9896 without restraints) Performing minimization step: 83. Total energy = 63433.4428 kcal/mol (63363.9762 without restraints) Performing minimization step: 84. Total energy = 62883.2223 kcal/mol (62815.0508 without restraints) Performing minimization step: 85. Total energy = 62343.8265 kcal/mol (62276.9155 without restraints) Performing minimization step: 86. Total energy = 61814.9673 kcal/mol (61749.2833 without restraints) Performing minimization step: 87. Total energy = 61296.3666 kcal/mol (61231.8773 without restraints) Performing minimization step: 88. Total energy = 60787.7560 kcal/mol (60724.4304 without restraints) Performing minimization step: 89. Total energy = 60288.8764 kcal/mol (60226.6845 without restraints) Performing minimization step: 90. Total energy = 59799.4778 kcal/mol (59738.3904 without restraints) Performing minimization step: 91. Total energy = 59319.3181 kcal/mol (59259.3073 without restraints) Performing minimization step: 92. Total energy = 58848.1640 kcal/mol (58789.2027 without restraints) Performing minimization step: 93. Total energy = 58385.7899 kcal/mol (58327.8518 without restraints) Performing minimization step: 94. Total energy = 57931.9768 kcal/mol (57875.0366 without restraints) Performing minimization step: 95. Total energy = 57486.5138 kcal/mol (57430.5470 without restraints) Performing minimization step: 96. Total energy = 57049.1963 kcal/mol (56994.1790 without restraints) Performing minimization step: 97. Total energy = 56619.8262 kcal/mol (56565.7355 without restraints) Performing minimization step: 98. Total energy = 56198.2113 kcal/mol (56145.0249 without restraints) Performing minimization step: 99. Total energy = 55784.1662 kcal/mol (55731.8625 without restraints) Performing minimization step: 100. Total energy = 55377.5102 kcal/mol (55326.0683 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 101. Total energy = 54978.0695 kcal/mol (54927.4690 without restraints) Performing minimization step: 102. Total energy = 54585.6746 kcal/mol (54535.8959 without restraints) Performing minimization step: 103. Total energy = 54200.1602 kcal/mol (54151.1843 without restraints) Performing minimization step: 104. Total energy = 53821.3680 kcal/mol (53773.1762 without restraints) Performing minimization step: 105. Total energy = 53449.1428 kcal/mol (53401.7172 without restraints) Performing minimization step: 106. Total energy = 53083.3346 kcal/mol (53036.6578 without restraints) Performing minimization step: 107. Total energy = 52723.7976 kcal/mol (52677.8524 without restraints) Performing minimization step: 108. Total energy = 52370.3895 kcal/mol (52325.1595 without restraints) Performing minimization step: 109. Total energy = 52022.9730 kcal/mol (51978.4422 without restraints) Performing minimization step: 110. Total energy = 51681.4142 kcal/mol (51637.5671 without restraints) Performing minimization step: 111. Total energy = 51345.5829 kcal/mol (51302.4043 without restraints) Performing minimization step: 112. Total energy = 51015.3527 kcal/mol (50972.8278 without restraints) Performing minimization step: 113. Total energy = 50690.6005 kcal/mol (50648.7151 without restraints) Performing minimization step: 114. Total energy = 50371.2067 kcal/mol (50329.9468 without restraints) Performing minimization step: 115. Total energy = 50057.0547 kcal/mol (50016.4067 without restraints) Performing minimization step: 116. Total energy = 49748.0310 kcal/mol (49707.9818 without restraints) Performing minimization step: 117. Total energy = 49444.0257 kcal/mol (49404.5623 without restraints) Performing minimization step: 118. Total energy = 49144.9308 kcal/mol (49106.0408 without restraints) Performing minimization step: 119. Total energy = 48850.6419 kcal/mol (48812.3131 without restraints) Performing minimization step: 120. Total energy = 48561.0571 kcal/mol (48523.2776 without restraints) Performing minimization step: 121. Total energy = 48276.0772 kcal/mol (48238.8357 without restraints) Performing minimization step: 122. Total energy = 47995.6055 kcal/mol (47958.8903 without restraints) Performing minimization step: 123. Total energy = 47719.5473 kcal/mol (47683.3474 without restraints) Performing minimization step: 124. Total energy = 47447.8114 kcal/mol (47412.1166 without restraints) Performing minimization step: 125. Total energy = 47180.3077 kcal/mol (47145.1070 without restraints) Performing minimization step: 126. Total energy = 46916.9483 kcal/mol (46882.2318 without restraints) Performing minimization step: 127. Total energy = 46657.6492 kcal/mol (46623.4069 without restraints) Performing minimization step: 128. Total energy = 46402.3271 kcal/mol (46368.5493 without restraints) Performing minimization step: 129. Total energy = 46150.9005 kcal/mol (46117.5779 without restraints) Performing minimization step: 130. Total energy = 45903.2905 kcal/mol (45870.4138 without restraints) Performing minimization step: 131. Total energy = 45659.4199 kcal/mol (45626.9798 without restraints) Performing minimization step: 132. Total energy = 45419.2138 kcal/mol (45387.2021 without restraints) Performing minimization step: 133. Total energy = 45182.5986 kcal/mol (45151.0065 without restraints) Performing minimization step: 134. Total energy = 44949.5026 kcal/mol (44918.3216 without restraints) Performing minimization step: 135. Total energy = 44719.8558 kcal/mol (44689.0779 without restraints) Performing minimization step: 136. Total energy = 44493.5896 kcal/mol (44463.2066 without restraints) Performing minimization step: 137. Total energy = 44270.6379 kcal/mol (44240.6424 without restraints) Performing minimization step: 138. Total energy = 44050.9348 kcal/mol (44021.3190 without restraints) Performing minimization step: 139. Total energy = 43834.4173 kcal/mol (43805.1737 without restraints) Performing minimization step: 140. Total energy = 43621.0230 kcal/mol (43592.1444 without restraints) Performing minimization step: 141. Total energy = 43410.6914 kcal/mol (43382.1707 without restraints) Performing minimization step: 142. Total energy = 43203.3626 kcal/mol (43175.1929 without restraints) Performing minimization step: 143. Total energy = 42998.9788 kcal/mol (42971.1534 without restraints) Performing minimization step: 144. Total energy = 42797.4837 kcal/mol (42769.9960 without restraints) Performing minimization step: 145. Total energy = 42598.8219 kcal/mol (42571.6653 without restraints) Performing minimization step: 146. Total energy = 42402.9388 kcal/mol (42376.1071 without restraints) Performing minimization step: 147. Total energy = 42209.7822 kcal/mol (42183.2692 without restraints) Performing minimization step: 148. Total energy = 42019.3001 kcal/mol (41993.0997 without restraints) Performing minimization step: 149. Total energy = 41831.4419 kcal/mol (41805.5482 without restraints) Performing minimization step: 150. Total energy = 41646.1589 kcal/mol (41620.5662 without restraints) Performing minimization step: 151. Total energy = 41463.4016 kcal/mol (41438.1043 without restraints) Performing minimization step: 152. Total energy = 41283.1232 kcal/mol (41258.1157 without restraints) Performing minimization step: 153. Total energy = 41105.2774 kcal/mol (41080.5543 without restraints) Performing minimization step: 154. Total energy = 40929.8194 kcal/mol (40905.3755 without restraints) Performing minimization step: 155. Total energy = 40756.7048 kcal/mol (40732.5349 without restraints) Performing minimization step: 156. Total energy = 40585.8903 kcal/mol (40561.9894 without restraints) Performing minimization step: 157. Total energy = 40417.3338 kcal/mol (40393.6969 without restraints) Performing minimization step: 158. Total energy = 40250.9936 kcal/mol (40227.6159 without restraints) Performing minimization step: 159. Total energy = 40086.8297 kcal/mol (40063.7064 without restraints) Performing minimization step: 160. Total energy = 39924.8019 kcal/mol (39901.9284 without restraints) Performing minimization step: 161. Total energy = 39764.8714 kcal/mol (39742.2433 without restraints) Performing minimization step: 162. Total energy = 39607.0010 kcal/mol (39584.6137 without restraints) Performing minimization step: 163. Total energy = 39451.1529 kcal/mol (39429.0022 without restraints) Performing minimization step: 164. Total energy = 39297.2911 kcal/mol (39275.3727 without restraints) Performing minimization step: 165. Total energy = 39145.3801 kcal/mol (39123.6899 without restraints) Performing minimization step: 166. Total energy = 38995.3842 kcal/mol (38973.9180 without restraints) Performing minimization step: 167. Total energy = 38847.2700 kcal/mol (38826.0238 without restraints) Performing minimization step: 168. Total energy = 38701.0041 kcal/mol (38679.9740 without restraints) Performing minimization step: 169. Total energy = 38556.5535 kcal/mol (38535.7359 without restraints) Performing minimization step: 170. Total energy = 38413.8863 kcal/mol (38393.2772 without restraints) Performing minimization step: 171. Total energy = 38272.9712 kcal/mol (38252.5672 without restraints) Performing minimization step: 172. Total energy = 38133.7776 kcal/mol (38113.5750 without restraints) Performing minimization step: 173. Total energy = 37996.2753 kcal/mol (37976.2705 without restraints) Performing minimization step: 174. Total energy = 37860.4348 kcal/mol (37840.6244 without restraints) Performing minimization step: 175. Total energy = 37726.2271 kcal/mol (37706.6078 without restraints) Performing minimization step: 176. Total energy = 37593.6243 kcal/mol (37574.1924 without restraints) Performing minimization step: 177. Total energy = 37462.5988 kcal/mol (37443.3517 without restraints) Performing minimization step: 178. Total energy = 37333.1231 kcal/mol (37314.0573 without restraints) Performing minimization step: 179. Total energy = 37205.1708 kcal/mol (37186.2833 without restraints) Performing minimization step: 180. Total energy = 37078.7157 kcal/mol (37060.0033 without restraints) Performing minimization step: 181. Total energy = 36953.7323 kcal/mol (36935.1921 without restraints) Performing minimization step: 182. Total energy = 36830.1956 kcal/mol (36811.8247 without restraints) Performing minimization step: 183. Total energy = 36708.0811 kcal/mol (36689.8767 without restraints) Performing minimization step: 184. Total energy = 36587.3648 kcal/mol (36569.3239 without restraints) Performing minimization step: 185. Total energy = 36468.0232 kcal/mol (36450.1432 without restraints) Performing minimization step: 186. Total energy = 36350.0330 kcal/mol (36332.3111 without restraints) Performing minimization step: 187. Total energy = 36233.3716 kcal/mol (36215.8052 without restraints) Performing minimization step: 188. Total energy = 36118.0167 kcal/mol (36100.6030 without restraints) Performing minimization step: 189. Total energy = 36003.9465 kcal/mol (35986.6833 without restraints) Performing minimization step: 190. Total energy = 35891.1399 kcal/mol (35874.0247 without restraints) Performing minimization step: 191. Total energy = 35779.5761 kcal/mol (35762.6063 without restraints) Performing minimization step: 192. Total energy = 35669.2345 kcal/mol (35652.4077 without restraints) Performing minimization step: 193. Total energy = 35560.0951 kcal/mol (35543.4089 without restraints) Performing minimization step: 194. Total energy = 35452.1379 kcal/mol (35435.5901 without restraints) Performing minimization step: 195. Total energy = 35345.3435 kcal/mol (35328.9318 without restraints) Performing minimization step: 196. Total energy = 35239.6934 kcal/mol (35223.4156 without restraints) Performing minimization step: 197. Total energy = 35135.1686 kcal/mol (35119.0225 without restraints) Performing minimization step: 198. Total energy = 35031.7507 kcal/mol (35015.7342 without restraints) Performing minimization step: 199. Total energy = 34929.4220 kcal/mol (34913.5330 without restraints) Performing minimization step: 200. Total energy = 34828.1651 kcal/mol (34812.4015 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 201. Total energy = 34727.9625 kcal/mol (34712.3223 without restraints) Performing minimization step: 202. Total energy = 34628.7969 kcal/mol (34613.2781 without restraints) Performing minimization step: 203. Total energy = 34530.6521 kcal/mol (34515.2527 without restraints) Performing minimization step: 204. Total energy = 34433.5120 kcal/mol (34418.2303 without restraints) Performing minimization step: 205. Total energy = 34337.3604 kcal/mol (34322.1944 without restraints) Performing minimization step: 206. Total energy = 34242.1812 kcal/mol (34227.1291 without restraints) Performing minimization step: 207. Total energy = 34147.9597 kcal/mol (34133.0196 without restraints) Performing minimization step: 208. Total energy = 34054.6804 kcal/mol (34039.8507 without restraints) Performing minimization step: 209. Total energy = 33962.3288 kcal/mol (33947.6076 without restraints) Performing minimization step: 210. Total energy = 33870.8900 kcal/mol (33856.2757 without restraints) Performing minimization step: 211. Total energy = 33780.3502 kcal/mol (33765.8411 without restraints) Performing minimization step: 212. Total energy = 33690.6947 kcal/mol (33676.2891 without restraints) Performing minimization step: 213. Total energy = 33601.9099 kcal/mol (33587.6063 without restraints) Performing minimization step: 214. Total energy = 33513.9825 kcal/mol (33499.7793 without restraints) Performing minimization step: 215. Total energy = 33426.8988 kcal/mol (33412.7943 without restraints) Performing minimization step: 216. Total energy = 33340.6462 kcal/mol (33326.6390 without restraints) Performing minimization step: 217. Total energy = 33255.2117 kcal/mol (33241.3003 without restraints) Performing minimization step: 218. Total energy = 33170.5825 kcal/mol (33156.7653 without restraints) Performing minimization step: 219. Total energy = 33086.7469 kcal/mol (33073.0226 without restraints) Performing minimization step: 220. Total energy = 33003.6923 kcal/mol (32990.0597 without restraints) Performing minimization step: 221. Total energy = 32921.4070 kcal/mol (32907.8643 without restraints) Performing minimization step: 222. Total energy = 32839.8791 kcal/mol (32826.4251 without restraints) Performing minimization step: 223. Total energy = 32759.0970 kcal/mol (32745.7305 without restraints) Performing minimization step: 224. Total energy = 32679.0498 kcal/mol (32665.7691 without restraints) Performing minimization step: 225. Total energy = 32599.7259 kcal/mol (32586.5300 without restraints) Performing minimization step: 226. Total energy = 32521.1147 kcal/mol (32508.0022 without restraints) Performing minimization step: 227. Total energy = 32443.2057 kcal/mol (32430.1753 without restraints) Performing minimization step: 228. Total energy = 32365.9883 kcal/mol (32353.0389 without restraints) Performing minimization step: 229. Total energy = 32289.4523 kcal/mol (32276.5827 without restraints) Performing minimization step: 230. Total energy = 32213.5867 kcal/mol (32200.7957 without restraints) Performing minimization step: 231. Total energy = 32138.3822 kcal/mol (32125.6685 without restraints) Performing minimization step: 232. Total energy = 32063.8287 kcal/mol (32051.1913 without restraints) Performing minimization step: 233. Total energy = 31989.9169 kcal/mol (31977.3546 without restraints) Performing minimization step: 234. Total energy = 31916.6375 kcal/mol (31904.1492 without restraints) Performing minimization step: 235. Total energy = 31843.9807 kcal/mol (31831.5653 without restraints) Performing minimization step: 236. Total energy = 31771.9375 kcal/mol (31759.5940 without restraints) Performing minimization step: 237. Total energy = 31700.4989 kcal/mol (31688.2262 without restraints) Performing minimization step: 238. Total energy = 31629.6561 kcal/mol (31617.4532 without restraints) Performing minimization step: 239. Total energy = 31559.4010 kcal/mol (31547.2669 without restraints) Performing minimization step: 240. Total energy = 31489.7245 kcal/mol (31477.6582 without restraints) Performing minimization step: 241. Total energy = 31420.6185 kcal/mol (31408.6188 without restraints) Performing minimization step: 242. Total energy = 31352.0742 kcal/mol (31340.1404 without restraints) Performing minimization step: 243. Total energy = 31284.0839 kcal/mol (31272.2149 without restraints) Performing minimization step: 244. Total energy = 31216.6396 kcal/mol (31204.8346 without restraints) Performing minimization step: 245. Total energy = 31149.7335 kcal/mol (31137.9916 without restraints) Performing minimization step: 246. Total energy = 31083.3575 kcal/mol (31071.6776 without restraints) Performing minimization step: 247. Total energy = 31017.5049 kcal/mol (31005.8863 without restraints) Performing minimization step: 248. Total energy = 30952.1678 kcal/mol (30940.6095 without restraints) Performing minimization step: 249. Total energy = 30887.3387 kcal/mol (30875.8400 without restraints) Performing minimization step: 250. Total energy = 30823.0109 kcal/mol (30811.5708 without restraints) Performing minimization step: 251. Total energy = 30759.1772 kcal/mol (30747.7950 without restraints) Performing minimization step: 252. Total energy = 30695.8305 kcal/mol (30684.5053 without restraints) Performing minimization step: 253. Total energy = 30632.9639 kcal/mol (30621.6950 without restraints) Performing minimization step: 254. Total energy = 30570.5702 kcal/mol (30559.3567 without restraints) Performing minimization step: 255. Total energy = 30508.6438 kcal/mol (30497.4850 without restraints) Performing minimization step: 256. Total energy = 30447.1778 kcal/mol (30436.0729 without restraints) Performing minimization step: 257. Total energy = 30386.1657 kcal/mol (30375.1140 without restraints) Performing minimization step: 258. Total energy = 30325.6015 kcal/mol (30314.6022 without restraints) Performing minimization step: 259. Total energy = 30265.4786 kcal/mol (30254.5310 without restraints) Performing minimization step: 260. Total energy = 30205.7908 kcal/mol (30194.8941 without restraints) Performing minimization step: 261. Total energy = 30146.5328 kcal/mol (30135.6864 without restraints) Performing minimization step: 262. Total energy = 30087.6985 kcal/mol (30076.9018 without restraints) Performing minimization step: 263. Total energy = 30029.2820 kcal/mol (30018.5342 without restraints) Performing minimization step: 264. Total energy = 29971.2773 kcal/mol (29960.5778 without restraints) Performing minimization step: 265. Total energy = 29913.6790 kcal/mol (29903.0268 without restraints) Performing minimization step: 266. Total energy = 29856.4824 kcal/mol (29845.8774 without restraints) Performing minimization step: 267. Total energy = 29799.6812 kcal/mol (29789.1226 without restraints) Performing minimization step: 268. Total energy = 29743.2699 kcal/mol (29732.7570 without restraints) Performing minimization step: 269. Total energy = 29687.2441 kcal/mol (29676.7763 without restraints) Performing minimization step: 270. Total energy = 29631.5985 kcal/mol (29621.1752 without restraints) Performing minimization step: 271. Total energy = 29576.3277 kcal/mol (29565.9484 without restraints) Performing minimization step: 272. Total energy = 29521.4269 kcal/mol (29511.0908 without restraints) Performing minimization step: 273. Total energy = 29466.8909 kcal/mol (29456.5974 without restraints) Performing minimization step: 274. Total energy = 29412.7149 kcal/mol (29402.4637 without restraints) Performing minimization step: 275. Total energy = 29358.8944 kcal/mol (29348.6849 without restraints) Performing minimization step: 276. Total energy = 29305.4250 kcal/mol (29295.2567 without restraints) Performing minimization step: 277. Total energy = 29252.3019 kcal/mol (29242.1740 without restraints) Performing minimization step: 278. Total energy = 29199.5205 kcal/mol (29189.4326 without restraints) Performing minimization step: 279. Total energy = 29147.0764 kcal/mol (29137.0280 without restraints) Performing minimization step: 280. Total energy = 29094.9647 kcal/mol (29084.9554 without restraints) Performing minimization step: 281. Total energy = 29043.1818 kcal/mol (29033.2107 without restraints) Performing minimization step: 282. Total energy = 28991.7222 kcal/mol (28981.7890 without restraints) Performing minimization step: 283. Total energy = 28940.5835 kcal/mol (28930.6881 without restraints) Performing minimization step: 284. Total energy = 28889.7612 kcal/mol (28879.9028 without restraints) Performing minimization step: 285. Total energy = 28839.2509 kcal/mol (28829.4290 without restraints) Performing minimization step: 286. Total energy = 28789.0485 kcal/mol (28779.2627 without restraints) Performing minimization step: 287. Total energy = 28739.1504 kcal/mol (28729.4002 without restraints) Performing minimization step: 288. Total energy = 28689.5528 kcal/mol (28679.8379 without restraints) Performing minimization step: 289. Total energy = 28640.2514 kcal/mol (28630.5711 without restraints) Performing minimization step: 290. Total energy = 28591.2429 kcal/mol (28581.5968 without restraints) Performing minimization step: 291. Total energy = 28542.5236 kcal/mol (28532.9115 without restraints) Performing minimization step: 292. Total energy = 28494.0900 kcal/mol (28484.5113 without restraints) Performing minimization step: 293. Total energy = 28445.9381 kcal/mol (28436.3926 without restraints) Performing minimization step: 294. Total energy = 28398.0658 kcal/mol (28388.5528 without restraints) Performing minimization step: 295. Total energy = 28350.4681 kcal/mol (28340.9873 without restraints) Performing minimization step: 296. Total energy = 28303.1421 kcal/mol (28293.6931 without restraints) Performing minimization step: 297. Total energy = 28256.0847 kcal/mol (28246.6670 without restraints) Performing minimization step: 298. Total energy = 28209.2926 kcal/mol (28199.9061 without restraints) Performing minimization step: 299. Total energy = 28162.7621 kcal/mol (28153.4063 without restraints) Performing minimization step: 300. Total energy = 28116.4905 kcal/mol (28107.1650 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 301. Total energy = 28070.4744 kcal/mol (28061.1788 without restraints) Performing minimization step: 302. Total energy = 28024.7111 kcal/mol (28015.4451 without restraints) Performing minimization step: 303. Total energy = 27979.1974 kcal/mol (27969.9606 without restraints) Performing minimization step: 304. Total energy = 27933.9304 kcal/mol (27924.7226 without restraints) Performing minimization step: 305. Total energy = 27888.9068 kcal/mol (27879.7275 without restraints) Performing minimization step: 306. Total energy = 27844.1243 kcal/mol (27834.9733 without restraints) Performing minimization step: 307. Total energy = 27799.5800 kcal/mol (27790.4567 without restraints) Performing minimization step: 308. Total energy = 27755.2705 kcal/mol (27746.1748 without restraints) Performing minimization step: 309. Total energy = 27711.1935 kcal/mol (27702.1248 without restraints) Performing minimization step: 310. Total energy = 27667.3462 kcal/mol (27658.3046 without restraints) Performing minimization step: 311. Total energy = 27623.7256 kcal/mol (27614.7106 without restraints) Performing minimization step: 312. Total energy = 27580.3301 kcal/mol (27571.3414 without restraints) Performing minimization step: 313. Total energy = 27537.1564 kcal/mol (27528.1937 without restraints) Performing minimization step: 314. Total energy = 27494.2022 kcal/mol (27485.2652 without restraints) Performing minimization step: 315. Total energy = 27451.4646 kcal/mol (27442.5528 without restraints) Performing minimization step: 316. Total energy = 27408.9415 kcal/mol (27400.0551 without restraints) Performing minimization step: 317. Total energy = 27366.6307 kcal/mol (27357.7690 without restraints) Performing minimization step: 318. Total energy = 27324.5288 kcal/mol (27315.6916 without restraints) Performing minimization step: 319. Total energy = 27282.6349 kcal/mol (27273.8219 without restraints) Performing minimization step: 320. Total energy = 27240.9456 kcal/mol (27232.1568 without restraints) Performing minimization step: 321. Total energy = 27199.4591 kcal/mol (27190.6939 without restraints) Performing minimization step: 322. Total energy = 27158.1728 kcal/mol (27149.4312 without restraints) Performing minimization step: 323. Total energy = 27117.0849 kcal/mol (27108.3665 without restraints) Performing minimization step: 324. Total energy = 27076.1930 kcal/mol (27067.4975 without restraints) Performing minimization step: 325. Total energy = 27035.4948 kcal/mol (27026.8220 without restraints) Performing minimization step: 326. Total energy = 26994.9888 kcal/mol (26986.3387 without restraints) Performing minimization step: 327. Total energy = 26954.6727 kcal/mol (26946.0446 without restraints) Performing minimization step: 328. Total energy = 26914.5443 kcal/mol (26905.9381 without restraints) Performing minimization step: 329. Total energy = 26874.6014 kcal/mol (26866.0170 without restraints) Performing minimization step: 330. Total energy = 26834.8418 kcal/mol (26826.2788 without restraints) Performing minimization step: 331. Total energy = 26795.2644 kcal/mol (26786.7229 without restraints) Performing minimization step: 332. Total energy = 26755.8672 kcal/mol (26747.3467 without restraints) Performing minimization step: 333. Total energy = 26716.6478 kcal/mol (26708.1482 without restraints) Performing minimization step: 334. Total energy = 26677.6041 kcal/mol (26669.1251 without restraints) Performing minimization step: 335. Total energy = 26638.7352 kcal/mol (26630.2766 without restraints) Performing minimization step: 336. Total energy = 26600.0384 kcal/mol (26591.6000 without restraints) Performing minimization step: 337. Total energy = 26561.5123 kcal/mol (26553.0939 without restraints) Performing minimization step: 338. Total energy = 26523.1547 kcal/mol (26514.7559 without restraints) Performing minimization step: 339. Total energy = 26484.9644 kcal/mol (26476.5853 without restraints) Performing minimization step: 340. Total energy = 26446.9401 kcal/mol (26438.5805 without restraints) Performing minimization step: 341. Total energy = 26409.0795 kcal/mol (26400.7390 without restraints) Performing minimization step: 342. Total energy = 26371.3810 kcal/mol (26363.0596 without restraints) Performing minimization step: 343. Total energy = 26333.8434 kcal/mol (26325.5408 without restraints) Performing minimization step: 344. Total energy = 26296.4649 kcal/mol (26288.1808 without restraints) Performing minimization step: 345. Total energy = 26259.2433 kcal/mol (26250.9776 without restraints) Performing minimization step: 346. Total energy = 26222.1779 kcal/mol (26213.9305 without restraints) Performing minimization step: 347. Total energy = 26185.2661 kcal/mol (26177.0370 without restraints) Performing minimization step: 348. Total energy = 26148.5083 kcal/mol (26140.2969 without restraints) Performing minimization step: 349. Total energy = 26111.9014 kcal/mol (26103.7079 without restraints) Performing minimization step: 350. Total energy = 26075.4444 kcal/mol (26067.2683 without restraints) Performing minimization step: 351. Total energy = 26039.1360 kcal/mol (26030.9773 without restraints) Performing minimization step: 352. Total energy = 26002.9744 kcal/mol (25994.8330 without restraints) Performing minimization step: 353. Total energy = 25966.9583 kcal/mol (25958.8339 without restraints) Performing minimization step: 354. Total energy = 25931.0860 kcal/mol (25922.9785 without restraints) Performing minimization step: 355. Total energy = 25895.3567 kcal/mol (25887.2659 without restraints) Performing minimization step: 356. Total energy = 25859.7695 kcal/mol (25851.6953 without restraints) Performing minimization step: 357. Total energy = 25824.3222 kcal/mol (25816.2645 without restraints) Performing minimization step: 358. Total energy = 25789.0140 kcal/mol (25780.9725 without restraints) Performing minimization step: 359. Total energy = 25753.8436 kcal/mol (25745.8183 without restraints) Performing minimization step: 360. Total energy = 25718.8096 kcal/mol (25710.8002 without restraints) Performing minimization step: 361. Total energy = 25683.9110 kcal/mol (25675.9173 without restraints) Performing minimization step: 362. Total energy = 25649.1454 kcal/mol (25641.1676 without restraints) Performing minimization step: 363. Total energy = 25614.5130 kcal/mol (25606.5507 without restraints) Performing minimization step: 364. Total energy = 25580.0123 kcal/mol (25572.0653 without restraints) Performing minimization step: 365. Total energy = 25545.6411 kcal/mol (25537.7094 without restraints) Performing minimization step: 366. Total energy = 25511.3999 kcal/mol (25503.4834 without restraints) Performing minimization step: 367. Total energy = 25477.2866 kcal/mol (25469.3849 without restraints) Performing minimization step: 368. Total energy = 25443.3002 kcal/mol (25435.4136 without restraints) Performing minimization step: 369. Total energy = 25409.4398 kcal/mol (25401.5679 without restraints) Performing minimization step: 370. Total energy = 25375.7041 kcal/mol (25367.8469 without restraints) Performing minimization step: 371. Total energy = 25342.0923 kcal/mol (25334.2495 without restraints) Performing minimization step: 372. Total energy = 25308.6032 kcal/mol (25300.7748 without restraints) Performing minimization step: 373. Total energy = 25275.2358 kcal/mol (25267.4217 without restraints) Performing minimization step: 374. Total energy = 25241.9885 kcal/mol (25234.1885 without restraints) Performing minimization step: 375. Total energy = 25208.8610 kcal/mol (25201.0750 without restraints) Performing minimization step: 376. Total energy = 25175.8515 kcal/mol (25168.0794 without restraints) Performing minimization step: 377. Total energy = 25142.9604 kcal/mol (25135.2023 without restraints) Performing minimization step: 378. Total energy = 25110.1860 kcal/mol (25102.4416 without restraints) Performing minimization step: 379. Total energy = 25077.5268 kcal/mol (25069.7956 without restraints) Performing minimization step: 380. Total energy = 25044.9818 kcal/mol (25037.2641 without restraints) Performing minimization step: 381. Total energy = 25012.5510 kcal/mol (25004.8466 without restraints) Performing minimization step: 382. Total energy = 24980.2328 kcal/mol (24972.5416 without restraints) Performing minimization step: 383. Total energy = 24948.0265 kcal/mol (24940.3485 without restraints) Performing minimization step: 384. Total energy = 24915.9312 kcal/mol (24908.2662 without restraints) Performing minimization step: 385. Total energy = 24883.9465 kcal/mol (24876.2944 without restraints) Performing minimization step: 386. Total energy = 24852.0706 kcal/mol (24844.4313 without restraints) Performing minimization step: 387. Total energy = 24820.3037 kcal/mol (24812.6771 without restraints) Performing minimization step: 388. Total energy = 24788.6437 kcal/mol (24781.0297 without restraints) Performing minimization step: 389. Total energy = 24757.0909 kcal/mol (24749.4895 without restraints) Performing minimization step: 390. Total energy = 24725.6439 kcal/mol (24718.0547 without restraints) Performing minimization step: 391. Total energy = 24694.3017 kcal/mol (24686.7249 without restraints) Performing minimization step: 392. Total energy = 24663.0636 kcal/mol (24655.4991 without restraints) Performing minimization step: 393. Total energy = 24631.9292 kcal/mol (24624.3769 without restraints) Performing minimization step: 394. Total energy = 24600.8977 kcal/mol (24593.3573 without restraints) Performing minimization step: 395. Total energy = 24569.9681 kcal/mol (24562.4397 without restraints) Performing minimization step: 396. Total energy = 24539.1396 kcal/mol (24531.6231 without restraints) Performing minimization step: 397. Total energy = 24508.4119 kcal/mol (24500.9072 without restraints) Performing minimization step: 398. Total energy = 24477.7839 kcal/mol (24470.2909 without restraints) Performing minimization step: 399. Total energy = 24447.2549 kcal/mol (24439.7734 without restraints) Performing minimization step: 400. Total energy = 24416.8233 kcal/mol (24409.3535 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 401. Total energy = 24386.4901 kcal/mol (24379.0316 without restraints) Performing minimization step: 402. Total energy = 24356.2538 kcal/mol (24348.8066 without restraints) Performing minimization step: 403. Total energy = 24326.1135 kcal/mol (24318.6777 without restraints) Performing minimization step: 404. Total energy = 24296.0686 kcal/mol (24288.6439 without restraints) Performing minimization step: 405. Total energy = 24266.1185 kcal/mol (24258.7050 without restraints) Performing minimization step: 406. Total energy = 24236.2631 kcal/mol (24228.8606 without restraints) Performing minimization step: 407. Total energy = 24206.5007 kcal/mol (24199.1090 without restraints) Performing minimization step: 408. Total energy = 24176.8312 kcal/mol (24169.4506 without restraints) Performing minimization step: 409. Total energy = 24147.2539 kcal/mol (24139.8841 without restraints) Performing minimization step: 410. Total energy = 24117.7685 kcal/mol (24110.4094 without restraints) Performing minimization step: 411. Total energy = 24088.3739 kcal/mol (24081.0255 without restraints) Performing minimization step: 412. Total energy = 24059.0694 kcal/mol (24051.7316 without restraints) Performing minimization step: 413. Total energy = 24029.8549 kcal/mol (24022.5277 without restraints) Performing minimization step: 414. Total energy = 24000.7294 kcal/mol (23993.4126 without restraints) Performing minimization step: 415. Total energy = 23971.6926 kcal/mol (23964.3863 without restraints) Performing minimization step: 416. Total energy = 23942.7433 kcal/mol (23935.4472 without restraints) Performing minimization step: 417. Total energy = 23913.8816 kcal/mol (23906.5957 without restraints) Performing minimization step: 418. Total energy = 23885.1070 kcal/mol (23877.8313 without restraints) Performing minimization step: 419. Total energy = 23856.4187 kcal/mol (23849.1534 without restraints) Performing minimization step: 420. Total energy = 23827.8165 kcal/mol (23820.5611 without restraints) Performing minimization step: 421. Total energy = 23799.2985 kcal/mol (23792.0530 without restraints) Performing minimization step: 422. Total energy = 23770.8654 kcal/mol (23763.6298 without restraints) Performing minimization step: 423. Total energy = 23742.5172 kcal/mol (23735.2915 without restraints) Performing minimization step: 424. Total energy = 23714.2518 kcal/mol (23707.0359 without restraints) Performing minimization step: 425. Total energy = 23686.0689 kcal/mol (23678.8626 without restraints) Performing minimization step: 426. Total energy = 23657.9693 kcal/mol (23650.7730 without restraints) Performing minimization step: 427. Total energy = 23629.9513 kcal/mol (23622.7644 without restraints) Performing minimization step: 428. Total energy = 23602.0151 kcal/mol (23594.8379 without restraints) Performing minimization step: 429. Total energy = 23574.1602 kcal/mol (23566.9924 without restraints) Performing minimization step: 430. Total energy = 23546.3850 kcal/mol (23539.2266 without restraints) Performing minimization step: 431. Total energy = 23518.6899 kcal/mol (23511.5408 without restraints) Performing minimization step: 432. Total energy = 23491.0743 kcal/mol (23483.9346 without restraints) Performing minimization step: 433. Total energy = 23463.5378 kcal/mol (23456.4075 without restraints) Performing minimization step: 434. Total energy = 23436.0801 kcal/mol (23428.9589 without restraints) Performing minimization step: 435. Total energy = 23408.7004 kcal/mol (23401.5885 without restraints) Performing minimization step: 436. Total energy = 23381.3985 kcal/mol (23374.2957 without restraints) Performing minimization step: 437. Total energy = 23354.1738 kcal/mol (23347.0801 without restraints) Performing minimization step: 438. Total energy = 23327.0257 kcal/mol (23319.9410 without restraints) Performing minimization step: 439. Total energy = 23299.9541 kcal/mol (23292.8784 without restraints) Performing minimization step: 440. Total energy = 23272.9585 kcal/mol (23265.8918 without restraints) Performing minimization step: 441. Total energy = 23246.0384 kcal/mol (23238.9806 without restraints) Performing minimization step: 442. Total energy = 23219.1933 kcal/mol (23212.1442 without restraints) Performing minimization step: 443. Total energy = 23192.4229 kcal/mol (23185.3826 without restraints) Performing minimization step: 444. Total energy = 23165.7262 kcal/mol (23158.6946 without restraints) Performing minimization step: 445. Total energy = 23139.1039 kcal/mol (23132.0809 without restraints) Performing minimization step: 446. Total energy = 23112.5548 kcal/mol (23105.5406 without restraints) Performing minimization step: 447. Total energy = 23086.0790 kcal/mol (23079.0732 without restraints) Performing minimization step: 448. Total energy = 23059.6758 kcal/mol (23052.6786 without restraints) Performing minimization step: 449. Total energy = 23033.3444 kcal/mol (23026.3557 without restraints) Performing minimization step: 450. Total energy = 23007.0845 kcal/mol (23000.1042 without restraints) Performing minimization step: 451. Total energy = 22980.8964 kcal/mol (22973.9245 without restraints) Performing minimization step: 452. Total energy = 22954.7792 kcal/mol (22947.8157 without restraints) Performing minimization step: 453. Total energy = 22928.7327 kcal/mol (22921.7775 without restraints) Performing minimization step: 454. Total energy = 22902.7562 kcal/mol (22895.8092 without restraints) Performing minimization step: 455. Total energy = 22876.8499 kcal/mol (22869.9108 without restraints) Performing minimization step: 456. Total energy = 22851.0127 kcal/mol (22844.0822 without restraints) Performing minimization step: 457. Total energy = 22825.2453 kcal/mol (22818.3229 without restraints) Performing minimization step: 458. Total energy = 22799.5465 kcal/mol (22792.6322 without restraints) Performing minimization step: 459. Total energy = 22773.9167 kcal/mol (22767.0106 without restraints) Performing minimization step: 460. Total energy = 22748.3551 kcal/mol (22741.4568 without restraints) Performing minimization step: 461. Total energy = 22722.8609 kcal/mol (22715.9708 without restraints) Performing minimization step: 462. Total energy = 22697.4339 kcal/mol (22690.5516 without restraints) Performing minimization step: 463. Total energy = 22672.0741 kcal/mol (22665.1994 without restraints) Performing minimization step: 464. Total energy = 22646.7804 kcal/mol (22639.9138 without restraints) Performing minimization step: 465. Total energy = 22621.5535 kcal/mol (22614.6946 without restraints) Performing minimization step: 466. Total energy = 22596.3936 kcal/mol (22589.5426 without restraints) Performing minimization step: 467. Total energy = 22571.2988 kcal/mol (22564.4556 without restraints) Performing minimization step: 468. Total energy = 22546.2703 kcal/mol (22539.4348 without restraints) Performing minimization step: 469. Total energy = 22521.3062 kcal/mol (22514.4784 without restraints) Performing minimization step: 470. Total energy = 22496.4066 kcal/mol (22489.5864 without restraints) Performing minimization step: 471. Total energy = 22471.5719 kcal/mol (22464.7592 without restraints) Performing minimization step: 472. Total energy = 22446.8014 kcal/mol (22439.9963 without restraints) Performing minimization step: 473. Total energy = 22422.0946 kcal/mol (22415.2971 without restraints) Performing minimization step: 474. Total energy = 22397.4516 kcal/mol (22390.6616 without restraints) Performing minimization step: 475. Total energy = 22372.8716 kcal/mol (22366.0890 without restraints) Performing minimization step: 476. Total energy = 22348.3547 kcal/mol (22341.5795 without restraints) Performing minimization step: 477. Total energy = 22323.9007 kcal/mol (22317.1329 without restraints) Performing minimization step: 478. Total energy = 22299.5092 kcal/mol (22292.7488 without restraints) Performing minimization step: 479. Total energy = 22275.1798 kcal/mol (22268.4268 without restraints) Performing minimization step: 480. Total energy = 22250.9118 kcal/mol (22244.1661 without restraints) Performing minimization step: 481. Total energy = 22226.7057 kcal/mol (22219.9672 without restraints) Performing minimization step: 482. Total energy = 22202.5611 kcal/mol (22195.8298 without restraints) Performing minimization step: 483. Total energy = 22178.4778 kcal/mol (22171.7537 without restraints) Performing minimization step: 484. Total energy = 22154.4547 kcal/mol (22147.7378 without restraints) Performing minimization step: 485. Total energy = 22130.4925 kcal/mol (22123.7827 without restraints) Performing minimization step: 486. Total energy = 22106.5907 kcal/mol (22099.8880 without restraints) Performing minimization step: 487. Total energy = 22082.7483 kcal/mol (22076.0527 without restraints) Performing minimization step: 488. Total energy = 22058.9658 kcal/mol (22052.2772 without restraints) Performing minimization step: 489. Total energy = 22035.2428 kcal/mol (22028.5613 without restraints) Performing minimization step: 490. Total energy = 22011.5788 kcal/mol (22004.9044 without restraints) Performing minimization step: 491. Total energy = 21987.9736 kcal/mol (21981.3060 without restraints) Performing minimization step: 492. Total energy = 21964.4271 kcal/mol (21957.7664 without restraints) Performing minimization step: 493. Total energy = 21940.9388 kcal/mol (21934.2850 without restraints) Performing minimization step: 494. Total energy = 21917.5089 kcal/mol (21910.8619 without restraints) Performing minimization step: 495. Total energy = 21894.1369 kcal/mol (21887.4968 without restraints) Performing minimization step: 496. Total energy = 21870.8225 kcal/mol (21864.1893 without restraints) Performing minimization step: 497. Total energy = 21847.5654 kcal/mol (21840.9390 without restraints) Performing minimization step: 498. Total energy = 21824.3663 kcal/mol (21817.7465 without restraints) Performing minimization step: 499. Total energy = 21801.2237 kcal/mol (21794.6107 without restraints) Performing minimization step: 500. Total energy = 21778.1372 kcal/mol (21771.5307 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 501. Total energy = 21755.1075 kcal/mol (21748.5078 without restraints) Performing minimization step: 502. Total energy = 21732.1340 kcal/mol (21725.5409 without restraints) Performing minimization step: 503. Total energy = 21709.2166 kcal/mol (21702.6301 without restraints) Performing minimization step: 504. Total energy = 21686.3550 kcal/mol (21679.7750 without restraints) Performing minimization step: 505. Total energy = 21663.5488 kcal/mol (21656.9755 without restraints) Performing minimization step: 506. Total energy = 21640.7983 kcal/mol (21634.2316 without restraints) Performing minimization step: 507. Total energy = 21618.1026 kcal/mol (21611.5424 without restraints) Performing minimization step: 508. Total energy = 21595.4622 kcal/mol (21588.9086 without restraints) Performing minimization step: 509. Total energy = 21572.8765 kcal/mol (21566.3293 without restraints) Performing minimization step: 510. Total energy = 21550.3459 kcal/mol (21543.8052 without restraints) Performing minimization step: 511. Total energy = 21527.8684 kcal/mol (21521.3340 without restraints) Performing minimization step: 512. Total energy = 21505.4450 kcal/mol (21498.9171 without restraints) Performing minimization step: 513. Total energy = 21483.0756 kcal/mol (21476.5540 without restraints) Performing minimization step: 514. Total energy = 21460.7597 kcal/mol (21454.2444 without restraints) Performing minimization step: 515. Total energy = 21438.4969 kcal/mol (21431.9878 without restraints) Performing minimization step: 516. Total energy = 21416.2870 kcal/mol (21409.7843 without restraints) Performing minimization step: 517. Total energy = 21394.1302 kcal/mol (21387.6338 without restraints) Performing minimization step: 518. Total energy = 21372.0264 kcal/mol (21365.5363 without restraints) Performing minimization step: 519. Total energy = 21349.9757 kcal/mol (21343.4919 without restraints) Performing minimization step: 520. Total energy = 21327.9773 kcal/mol (21321.4998 without restraints) Performing minimization step: 521. Total energy = 21306.0309 kcal/mol (21299.5594 without restraints) Performing minimization step: 522. Total energy = 21284.1365 kcal/mol (21277.6714 without restraints) Performing minimization step: 523. Total energy = 21262.2939 kcal/mol (21255.8347 without restraints) Performing minimization step: 524. Total energy = 21240.5029 kcal/mol (21234.0497 without restraints) Performing minimization step: 525. Total energy = 21218.7628 kcal/mol (21212.3158 without restraints) Performing minimization step: 526. Total energy = 21197.0745 kcal/mol (21190.6337 without restraints) Performing minimization step: 527. Total energy = 21175.4370 kcal/mol (21169.0022 without restraints) Performing minimization step: 528. Total energy = 21153.8502 kcal/mol (21147.4214 without restraints) Performing minimization step: 529. Total energy = 21132.3137 kcal/mol (21125.8908 without restraints) Performing minimization step: 530. Total energy = 21110.8279 kcal/mol (21104.4110 without restraints) Performing minimization step: 531. Total energy = 21089.3927 kcal/mol (21082.9820 without restraints) Performing minimization step: 532. Total energy = 21068.0076 kcal/mol (21061.6028 without restraints) Performing minimization step: 533. Total energy = 21046.6722 kcal/mol (21040.2732 without restraints) Performing minimization step: 534. Total energy = 21025.3866 kcal/mol (21018.9933 without restraints) Performing minimization step: 535. Total energy = 21004.1503 kcal/mol (20997.7629 without restraints) Performing minimization step: 536. Total energy = 20982.9634 kcal/mol (20976.5821 without restraints) Performing minimization step: 537. Total energy = 20961.8257 kcal/mol (20955.4502 without restraints) Performing minimization step: 538. Total energy = 20940.7373 kcal/mol (20934.3676 without restraints) Performing minimization step: 539. Total energy = 20919.6971 kcal/mol (20913.3332 without restraints) Performing minimization step: 540. Total energy = 20898.7058 kcal/mol (20892.3475 without restraints) Performing minimization step: 541. Total energy = 20877.7626 kcal/mol (20871.4103 without restraints) Performing minimization step: 542. Total energy = 20856.8678 kcal/mol (20850.5210 without restraints) Performing minimization step: 543. Total energy = 20836.0206 kcal/mol (20829.6797 without restraints) Performing minimization step: 544. Total energy = 20815.2227 kcal/mol (20808.8874 without restraints) Performing minimization step: 545. Total energy = 20794.4721 kcal/mol (20788.1426 without restraints) Performing minimization step: 546. Total energy = 20773.7689 kcal/mol (20767.4450 without restraints) Performing minimization step: 547. Total energy = 20753.1137 kcal/mol (20746.7956 without restraints) Performing minimization step: 548. Total energy = 20732.5063 kcal/mol (20726.1938 without restraints) Performing minimization step: 549. Total energy = 20711.9456 kcal/mol (20705.6388 without restraints) Performing minimization step: 550. Total energy = 20691.4320 kcal/mol (20685.1308 without restraints) Performing minimization step: 551. Total energy = 20670.9651 kcal/mol (20664.6693 without restraints) Performing minimization step: 552. Total energy = 20650.5447 kcal/mol (20644.2544 without restraints) Performing minimization step: 553. Total energy = 20630.1709 kcal/mol (20623.8862 without restraints) Performing minimization step: 554. Total energy = 20609.8434 kcal/mol (20603.5643 without restraints) Performing minimization step: 555. Total energy = 20589.5621 kcal/mol (20583.2885 without restraints) Performing minimization step: 556. Total energy = 20569.3270 kcal/mol (20563.0589 without restraints) Performing minimization step: 557. Total energy = 20549.1378 kcal/mol (20542.8751 without restraints) Performing minimization step: 558. Total energy = 20528.9947 kcal/mol (20522.7375 without restraints) Performing minimization step: 559. Total energy = 20508.8967 kcal/mol (20502.6449 without restraints) Performing minimization step: 560. Total energy = 20488.8440 kcal/mol (20482.5976 without restraints) Performing minimization step: 561. Total energy = 20468.8367 kcal/mol (20462.5957 without restraints) Performing minimization step: 562. Total energy = 20448.8750 kcal/mol (20442.6394 without restraints) Performing minimization step: 563. Total energy = 20428.9587 kcal/mol (20422.7285 without restraints) Performing minimization step: 564. Total energy = 20409.0862 kcal/mol (20402.8613 without restraints) Performing minimization step: 565. Total energy = 20389.2587 kcal/mol (20383.0393 without restraints) Performing minimization step: 566. Total energy = 20369.4767 kcal/mol (20363.2625 without restraints) Performing minimization step: 567. Total energy = 20349.7387 kcal/mol (20343.5299 without restraints) Performing minimization step: 568. Total energy = 20330.0443 kcal/mol (20323.8407 without restraints) Performing minimization step: 569. Total energy = 20310.3943 kcal/mol (20304.1961 without restraints) Performing minimization step: 570. Total energy = 20290.7883 kcal/mol (20284.5953 without restraints) Performing minimization step: 571. Total energy = 20271.2258 kcal/mol (20265.0380 without restraints) Performing minimization step: 572. Total energy = 20251.7073 kcal/mol (20245.5247 without restraints) Performing minimization step: 573. Total energy = 20232.2319 kcal/mol (20226.0546 without restraints) Performing minimization step: 574. Total energy = 20212.7998 kcal/mol (20206.6276 without restraints) Performing minimization step: 575. Total energy = 20193.4112 kcal/mol (20187.2442 without restraints) Performing minimization step: 576. Total energy = 20174.0652 kcal/mol (20167.9033 without restraints) Performing minimization step: 577. Total energy = 20154.7631 kcal/mol (20148.6064 without restraints) Performing minimization step: 578. Total energy = 20135.5037 kcal/mol (20129.3521 without restraints) Performing minimization step: 579. Total energy = 20116.2876 kcal/mol (20110.1411 without restraints) Performing minimization step: 580. Total energy = 20097.1127 kcal/mol (20090.9714 without restraints) Performing minimization step: 581. Total energy = 20077.9809 kcal/mol (20071.8446 without restraints) Performing minimization step: 582. Total energy = 20058.8915 kcal/mol (20052.7603 without restraints) Performing minimization step: 583. Total energy = 20039.8443 kcal/mol (20033.7182 without restraints) Performing minimization step: 584. Total energy = 20020.8392 kcal/mol (20014.7179 without restraints) Performing minimization step: 585. Total energy = 20001.8760 kcal/mol (19995.7601 without restraints) Performing minimization step: 586. Total energy = 19982.9547 kcal/mol (19976.8440 without restraints) Performing minimization step: 587. Total energy = 19964.0750 kcal/mol (19957.9687 without restraints) Performing minimization step: 588. Total energy = 19945.2362 kcal/mol (19939.1351 without restraints) Performing minimization step: 589. Total energy = 19926.4391 kcal/mol (19920.3431 without restraints) Performing minimization step: 590. Total energy = 19907.6832 kcal/mol (19901.5922 without restraints) Performing minimization step: 591. Total energy = 19888.9682 kcal/mol (19882.8819 without restraints) Performing minimization step: 592. Total energy = 19870.2943 kcal/mol (19864.2130 without restraints) Performing minimization step: 593. Total energy = 19851.6617 kcal/mol (19845.5853 without restraints) Performing minimization step: 594. Total energy = 19833.0694 kcal/mol (19826.9978 without restraints) Performing minimization step: 595. Total energy = 19814.5184 kcal/mol (19808.4518 without restraints) Performing minimization step: 596. Total energy = 19796.0073 kcal/mol (19789.9456 without restraints) Performing minimization step: 597. Total energy = 19777.5366 kcal/mol (19771.4797 without restraints) Performing minimization step: 598. Total energy = 19759.1058 kcal/mol (19753.0538 without restraints) Performing minimization step: 599. Total energy = 19740.7151 kcal/mol (19734.6679 without restraints) Performing minimization step: 600. Total energy = 19722.3648 kcal/mol (19716.3224 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 601. Total energy = 19704.0542 kcal/mol (19698.0166 without restraints) Performing minimization step: 602. Total energy = 19685.7842 kcal/mol (19679.7514 without restraints) Performing minimization step: 603. Total energy = 19667.5529 kcal/mol (19661.5248 without restraints) Performing minimization step: 604. Total energy = 19649.3616 kcal/mol (19643.3384 without restraints) Performing minimization step: 605. Total energy = 19631.2094 kcal/mol (19625.1909 without restraints) Performing minimization step: 606. Total energy = 19613.0964 kcal/mol (19607.0826 without restraints) Performing minimization step: 607. Total energy = 19595.0225 kcal/mol (19589.0135 without restraints) Performing minimization step: 608. Total energy = 19576.9884 kcal/mol (19570.9840 without restraints) Performing minimization step: 609. Total energy = 19558.9928 kcal/mol (19552.9932 without restraints) Performing minimization step: 610. Total energy = 19541.0359 kcal/mol (19535.0409 without restraints) Performing minimization step: 611. Total energy = 19523.1177 kcal/mol (19517.1274 without restraints) Performing minimization step: 612. Total energy = 19505.2383 kcal/mol (19499.2528 without restraints) Performing minimization step: 613. Total energy = 19487.3972 kcal/mol (19481.4162 without restraints) Performing minimization step: 614. Total energy = 19469.5944 kcal/mol (19463.6180 without restraints) Performing minimization step: 615. Total energy = 19451.8300 kcal/mol (19445.8582 without restraints) Performing minimization step: 616. Total energy = 19434.1032 kcal/mol (19428.1359 without restraints) Performing minimization step: 617. Total energy = 19416.4147 kcal/mol (19410.4522 without restraints) Performing minimization step: 618. Total energy = 19398.7645 kcal/mol (19392.8066 without restraints) Performing minimization step: 619. Total energy = 19381.1522 kcal/mol (19375.1988 without restraints) Performing minimization step: 620. Total energy = 19363.5766 kcal/mol (19357.6277 without restraints) Performing minimization step: 621. Total energy = 19346.0386 kcal/mol (19340.0943 without restraints) Performing minimization step: 622. Total energy = 19328.5389 kcal/mol (19322.5994 without restraints) Performing minimization step: 623. Total energy = 19311.0760 kcal/mol (19305.1406 without restraints) Performing minimization step: 624. Total energy = 19293.6497 kcal/mol (19287.7190 without restraints) Performing minimization step: 625. Total energy = 19276.2612 kcal/mol (19270.3349 without restraints) Performing minimization step: 626. Total energy = 19258.9098 kcal/mol (19252.9880 without restraints) Performing minimization step: 627. Total energy = 19241.5956 kcal/mol (19235.6783 without restraints) Performing minimization step: 628. Total energy = 19224.3176 kcal/mol (19218.4048 without restraints) Performing minimization step: 629. Total energy = 19207.0765 kcal/mol (19201.1681 without restraints) Performing minimization step: 630. Total energy = 19189.8715 kcal/mol (19183.9676 without restraints) Performing minimization step: 631. Total energy = 19172.7030 kcal/mol (19166.8034 without restraints) Performing minimization step: 632. Total energy = 19155.5714 kcal/mol (19149.6763 without restraints) Performing minimization step: 633. Total energy = 19138.4757 kcal/mol (19132.5850 without restraints) Performing minimization step: 634. Total energy = 19121.4164 kcal/mol (19115.5301 without restraints) Performing minimization step: 635. Total energy = 19104.3923 kcal/mol (19098.5102 without restraints) Performing minimization step: 636. Total energy = 19087.4046 kcal/mol (19081.5270 without restraints) Performing minimization step: 637. Total energy = 19070.4528 kcal/mol (19064.5793 without restraints) Performing minimization step: 638. Total energy = 19053.5365 kcal/mol (19047.6676 without restraints) Performing minimization step: 639. Total energy = 19036.6561 kcal/mol (19030.7916 without restraints) Performing minimization step: 640. Total energy = 19019.8110 kcal/mol (19013.9507 without restraints) Performing minimization step: 641. Total energy = 19003.0015 kcal/mol (18997.1456 without restraints) Performing minimization step: 642. Total energy = 18986.2270 kcal/mol (18980.3752 without restraints) Performing minimization step: 643. Total energy = 18969.4877 kcal/mol (18963.6404 without restraints) Performing minimization step: 644. Total energy = 18952.7838 kcal/mol (18946.9408 without restraints) Performing minimization step: 645. Total energy = 18936.1151 kcal/mol (18930.2763 without restraints) Performing minimization step: 646. Total energy = 18919.4812 kcal/mol (18913.6466 without restraints) Performing minimization step: 647. Total energy = 18902.8811 kcal/mol (18897.0507 without restraints) Performing minimization step: 648. Total energy = 18886.3168 kcal/mol (18880.4909 without restraints) Performing minimization step: 649. Total energy = 18869.7867 kcal/mol (18863.9648 without restraints) Performing minimization step: 650. Total energy = 18853.2906 kcal/mol (18847.4729 without restraints) Performing minimization step: 651. Total energy = 18836.8294 kcal/mol (18831.0160 without restraints) Performing minimization step: 652. Total energy = 18820.4023 kcal/mol (18814.5929 without restraints) Performing minimization step: 653. Total energy = 18804.0094 kcal/mol (18798.2044 without restraints) Performing minimization step: 654. Total energy = 18787.6508 kcal/mol (18781.8499 without restraints) Performing minimization step: 655. Total energy = 18771.3261 kcal/mol (18765.5294 without restraints) Performing minimization step: 656. Total energy = 18755.0353 kcal/mol (18749.2427 without restraints) Performing minimization step: 657. Total energy = 18738.7782 kcal/mol (18732.9897 without restraints) Performing minimization step: 658. Total energy = 18722.5549 kcal/mol (18716.7705 without restraints) Performing minimization step: 659. Total energy = 18706.3649 kcal/mol (18700.5847 without restraints) Performing minimization step: 660. Total energy = 18690.2089 kcal/mol (18684.4328 without restraints) Performing minimization step: 661. Total energy = 18674.0863 kcal/mol (18668.3143 without restraints) Performing minimization step: 662. Total energy = 18657.9964 kcal/mol (18652.2284 without restraints) Performing minimization step: 663. Total energy = 18641.9397 kcal/mol (18636.1759 without restraints) Performing minimization step: 664. Total energy = 18625.9167 kcal/mol (18620.1569 without restraints) Performing minimization step: 665. Total energy = 18609.9266 kcal/mol (18604.1709 without restraints) Performing minimization step: 666. Total energy = 18593.9686 kcal/mol (18588.2169 without restraints) Performing minimization step: 667. Total energy = 18578.0441 kcal/mol (18572.2964 without restraints) Performing minimization step: 668. Total energy = 18562.1523 kcal/mol (18556.4086 without restraints) Performing minimization step: 669. Total energy = 18546.2926 kcal/mol (18540.5530 without restraints) Performing minimization step: 670. Total energy = 18530.4666 kcal/mol (18524.7309 without restraints) Performing minimization step: 671. Total energy = 18514.6720 kcal/mol (18508.9404 without restraints) Performing minimization step: 672. Total energy = 18498.9104 kcal/mol (18493.1828 without restraints) Performing minimization step: 673. Total energy = 18483.1810 kcal/mol (18477.4573 without restraints) Performing minimization step: 674. Total energy = 18467.4837 kcal/mol (18461.7639 without restraints) Performing minimization step: 675. Total energy = 18451.8186 kcal/mol (18446.1028 without restraints) Performing minimization step: 676. Total energy = 18436.1849 kcal/mol (18430.4730 without restraints) Performing minimization step: 677. Total energy = 18420.5837 kcal/mol (18414.8758 without restraints) Performing minimization step: 678. Total energy = 18405.0143 kcal/mol (18399.3103 without restraints) Performing minimization step: 679. Total energy = 18389.4769 kcal/mol (18383.7768 without restraints) Performing minimization step: 680. Total energy = 18373.9708 kcal/mol (18368.2746 without restraints) Performing minimization step: 681. Total energy = 18358.4958 kcal/mol (18352.8035 without restraints) Performing minimization step: 682. Total energy = 18343.0519 kcal/mol (18337.3634 without restraints) Performing minimization step: 683. Total energy = 18327.6399 kcal/mol (18321.9553 without restraints) Performing minimization step: 684. Total energy = 18312.2588 kcal/mol (18306.5781 without restraints) Performing minimization step: 685. Total energy = 18296.9095 kcal/mol (18291.2325 without restraints) Performing minimization step: 686. Total energy = 18281.5908 kcal/mol (18275.9177 without restraints) Performing minimization step: 687. Total energy = 18266.3032 kcal/mol (18260.6340 without restraints) Performing minimization step: 688. Total energy = 18251.0461 kcal/mol (18245.3807 without restraints) Performing minimization step: 689. Total energy = 18235.8199 kcal/mol (18230.1583 without restraints) Performing minimization step: 690. Total energy = 18220.6245 kcal/mol (18214.9668 without restraints) Performing minimization step: 691. Total energy = 18205.4600 kcal/mol (18199.8061 without restraints) Performing minimization step: 692. Total energy = 18190.3257 kcal/mol (18184.6755 without restraints) Performing minimization step: 693. Total energy = 18175.2222 kcal/mol (18169.5757 without restraints) Performing minimization step: 694. Total energy = 18160.1490 kcal/mol (18154.5064 without restraints) Performing minimization step: 695. Total energy = 18145.1071 kcal/mol (18139.4683 without restraints) Performing minimization step: 696. Total energy = 18130.0944 kcal/mol (18124.4593 without restraints) Performing minimization step: 697. Total energy = 18115.1119 kcal/mol (18109.4807 without restraints) Performing minimization step: 698. Total energy = 18100.1594 kcal/mol (18094.5318 without restraints) Performing minimization step: 699. Total energy = 18085.2368 kcal/mol (18079.6129 without restraints) Performing minimization step: 700. Total energy = 18070.3440 kcal/mol (18064.7238 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 701. Total energy = 18055.4812 kcal/mol (18049.8647 without restraints) Performing minimization step: 702. Total energy = 18040.6484 kcal/mol (18035.0356 without restraints) Performing minimization step: 703. Total energy = 18025.8447 kcal/mol (18020.2356 without restraints) Performing minimization step: 704. Total energy = 18011.0706 kcal/mol (18005.4651 without restraints) Performing minimization step: 705. Total energy = 17996.3258 kcal/mol (17990.7240 without restraints) Performing minimization step: 706. Total energy = 17981.6112 kcal/mol (17976.0130 without restraints) Performing minimization step: 707. Total energy = 17966.9247 kcal/mol (17961.3303 without restraints) Performing minimization step: 708. Total energy = 17952.2672 kcal/mol (17946.6764 without restraints) Performing minimization step: 709. Total energy = 17937.6389 kcal/mol (17932.0517 without restraints) Performing minimization step: 710. Total energy = 17923.0400 kcal/mol (17917.4564 without restraints) Performing minimization step: 711. Total energy = 17908.4698 kcal/mol (17902.8898 without restraints) Performing minimization step: 712. Total energy = 17893.9286 kcal/mol (17888.3524 without restraints) Performing minimization step: 713. Total energy = 17879.4157 kcal/mol (17873.8429 without restraints) Performing minimization step: 714. Total energy = 17864.9314 kcal/mol (17859.3621 without restraints) Performing minimization step: 715. Total energy = 17850.4761 kcal/mol (17844.9105 without restraints) Performing minimization step: 716. Total energy = 17836.0488 kcal/mol (17830.4867 without restraints) Performing minimization step: 717. Total energy = 17821.6512 kcal/mol (17816.0926 without restraints) Performing minimization step: 718. Total energy = 17807.2810 kcal/mol (17801.7260 without restraints) Performing minimization step: 719. Total energy = 17792.9392 kcal/mol (17787.3878 without restraints) Performing minimization step: 720. Total energy = 17778.6256 kcal/mol (17773.0778 without restraints) Performing minimization step: 721. Total energy = 17764.3402 kcal/mol (17758.7957 without restraints) Performing minimization step: 722. Total energy = 17750.0824 kcal/mol (17744.5415 without restraints) Performing minimization step: 723. Total energy = 17735.8533 kcal/mol (17730.3160 without restraints) Performing minimization step: 724. Total energy = 17721.6514 kcal/mol (17716.1176 without restraints) Performing minimization step: 725. Total energy = 17707.4773 kcal/mol (17701.9470 without restraints) Performing minimization step: 726. Total energy = 17693.3308 kcal/mol (17687.8040 without restraints) Performing minimization step: 727. Total energy = 17679.2118 kcal/mol (17673.6884 without restraints) Performing minimization step: 728. Total energy = 17665.1205 kcal/mol (17659.6005 without restraints) Performing minimization step: 729. Total energy = 17651.0564 kcal/mol (17645.5399 without restraints) Performing minimization step: 730. Total energy = 17637.0196 kcal/mol (17631.5066 without restraints) Performing minimization step: 731. Total energy = 17623.0101 kcal/mol (17617.5004 without restraints) Performing minimization step: 732. Total energy = 17609.0278 kcal/mol (17603.5216 without restraints) Performing minimization step: 733. Total energy = 17595.0721 kcal/mol (17589.5694 without restraints) Performing minimization step: 734. Total energy = 17581.1448 kcal/mol (17575.6456 without restraints) Performing minimization step: 735. Total energy = 17567.2441 kcal/mol (17561.7480 without restraints) Performing minimization step: 736. Total energy = 17553.3697 kcal/mol (17547.8772 without restraints) Performing minimization step: 737. Total energy = 17539.5229 kcal/mol (17534.0339 without restraints) Performing minimization step: 738. Total energy = 17525.7026 kcal/mol (17520.2169 without restraints) Performing minimization step: 739. Total energy = 17511.9093 kcal/mol (17506.4268 without restraints) Performing minimization step: 740. Total energy = 17498.1423 kcal/mol (17492.6633 without restraints) Performing minimization step: 741. Total energy = 17484.4023 kcal/mol (17478.9267 without restraints) Performing minimization step: 742. Total energy = 17470.6880 kcal/mol (17465.2157 without restraints) Performing minimization step: 743. Total energy = 17457.0005 kcal/mol (17451.5315 without restraints) Performing minimization step: 744. Total energy = 17443.3388 kcal/mol (17437.8731 without restraints) Performing minimization step: 745. Total energy = 17429.7033 kcal/mol (17424.2410 without restraints) Performing minimization step: 746. Total energy = 17416.0941 kcal/mol (17410.6352 without restraints) Performing minimization step: 747. Total energy = 17402.5111 kcal/mol (17397.0554 without restraints) Performing minimization step: 748. Total energy = 17388.9535 kcal/mol (17383.5012 without restraints) Performing minimization step: 749. Total energy = 17375.4222 kcal/mol (17369.9731 without restraints) Performing minimization step: 750. Total energy = 17361.9166 kcal/mol (17356.4708 without restraints) Performing minimization step: 751. Total energy = 17348.4367 kcal/mol (17342.9941 without restraints) Performing minimization step: 752. Total energy = 17334.9825 kcal/mol (17329.5434 without restraints) Performing minimization step: 753. Total energy = 17321.5541 kcal/mol (17316.1182 without restraints) Performing minimization step: 754. Total energy = 17308.1507 kcal/mol (17302.7179 without restraints) Performing minimization step: 755. Total energy = 17294.7733 kcal/mol (17289.3438 without restraints) Performing minimization step: 756. Total energy = 17281.4211 kcal/mol (17275.9948 without restraints) Performing minimization step: 757. Total energy = 17268.0941 kcal/mol (17262.6710 without restraints) Performing minimization step: 758. Total energy = 17254.7921 kcal/mol (17249.3722 without restraints) Performing minimization step: 759. Total energy = 17241.5153 kcal/mol (17236.0986 without restraints) Performing minimization step: 760. Total energy = 17228.2640 kcal/mol (17222.8505 without restraints) Performing minimization step: 761. Total energy = 17215.0376 kcal/mol (17209.6274 without restraints) Performing minimization step: 762. Total energy = 17201.8362 kcal/mol (17196.4292 without restraints) Performing minimization step: 763. Total energy = 17188.6594 kcal/mol (17183.2557 without restraints) Performing minimization step: 764. Total energy = 17175.5074 kcal/mol (17170.1068 without restraints) Performing minimization step: 765. Total energy = 17162.3800 kcal/mol (17156.9824 without restraints) Performing minimization step: 766. Total energy = 17149.2776 kcal/mol (17143.8832 without restraints) Performing minimization step: 767. Total energy = 17136.1995 kcal/mol (17130.8084 without restraints) Performing minimization step: 768. Total energy = 17123.1457 kcal/mol (17117.7577 without restraints) Performing minimization step: 769. Total energy = 17110.1168 kcal/mol (17104.7319 without restraints) Performing minimization step: 770. Total energy = 17097.1123 kcal/mol (17091.7306 without restraints) Performing minimization step: 771. Total energy = 17084.1321 kcal/mol (17078.7535 without restraints) Performing minimization step: 772. Total energy = 17071.1759 kcal/mol (17065.8004 without restraints) Performing minimization step: 773. Total energy = 17058.2436 kcal/mol (17052.8711 without restraints) Performing minimization step: 774. Total energy = 17045.3355 kcal/mol (17039.9662 without restraints) Performing minimization step: 775. Total energy = 17032.4514 kcal/mol (17027.0850 without restraints) Performing minimization step: 776. Total energy = 17019.5912 kcal/mol (17014.2280 without restraints) Performing minimization step: 777. Total energy = 17006.7547 kcal/mol (17001.3947 without restraints) Performing minimization step: 778. Total energy = 16993.9425 kcal/mol (16988.5856 without restraints) Performing minimization step: 779. Total energy = 16981.1536 kcal/mol (16975.7998 without restraints) Performing minimization step: 780. Total energy = 16968.3882 kcal/mol (16963.0374 without restraints) Performing minimization step: 781. Total energy = 16955.6470 kcal/mol (16950.2993 without restraints) Performing minimization step: 782. Total energy = 16942.9293 kcal/mol (16937.5846 without restraints) Performing minimization step: 783. Total energy = 16930.2345 kcal/mol (16924.8927 without restraints) Performing minimization step: 784. Total energy = 16917.5634 kcal/mol (16912.2247 without restraints) Performing minimization step: 785. Total energy = 16904.9159 kcal/mol (16899.5803 without restraints) Performing minimization step: 786. Total energy = 16892.2914 kcal/mol (16886.9588 without restraints) Performing minimization step: 787. Total energy = 16879.6897 kcal/mol (16874.3601 without restraints) Performing minimization step: 788. Total energy = 16867.1118 kcal/mol (16861.7852 without restraints) Performing minimization step: 789. Total energy = 16854.5566 kcal/mol (16849.2330 without restraints) Performing minimization step: 790. Total energy = 16842.0244 kcal/mol (16836.7039 without restraints) Performing minimization step: 791. Total energy = 16829.5153 kcal/mol (16824.1977 without restraints) Performing minimization step: 792. Total energy = 16817.0292 kcal/mol (16811.7147 without restraints) Performing minimization step: 793. Total energy = 16804.5656 kcal/mol (16799.2538 without restraints) Performing minimization step: 794. Total energy = 16792.1243 kcal/mol (16786.8155 without restraints) Performing minimization step: 795. Total energy = 16779.7056 kcal/mol (16774.3998 without restraints) Performing minimization step: 796. Total energy = 16767.3094 kcal/mol (16762.0065 without restraints) Performing minimization step: 797. Total energy = 16754.9369 kcal/mol (16749.6370 without restraints) Performing minimization step: 798. Total energy = 16742.5866 kcal/mol (16737.2898 without restraints) Performing minimization step: 799. Total energy = 16730.2585 kcal/mol (16724.9644 without restraints) Performing minimization step: 800. Total energy = 16717.9522 kcal/mol (16712.6609 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 801. Total energy = 16705.6681 kcal/mol (16700.3798 without restraints) Performing minimization step: 802. Total energy = 16693.4061 kcal/mol (16688.1208 without restraints) Performing minimization step: 803. Total energy = 16681.1668 kcal/mol (16675.8843 without restraints) Performing minimization step: 804. Total energy = 16668.9493 kcal/mol (16663.6695 without restraints) Performing minimization step: 805. Total energy = 16656.7531 kcal/mol (16651.4763 without restraints) Performing minimization step: 806. Total energy = 16644.5793 kcal/mol (16639.3055 without restraints) Performing minimization step: 807. Total energy = 16632.4279 kcal/mol (16627.1570 without restraints) Performing minimization step: 808. Total energy = 16620.2976 kcal/mol (16615.0295 without restraints) Performing minimization step: 809. Total energy = 16608.1890 kcal/mol (16602.9238 without restraints) Performing minimization step: 810. Total energy = 16596.1016 kcal/mol (16590.8392 without restraints) Performing minimization step: 811. Total energy = 16584.0368 kcal/mol (16578.7773 without restraints) Performing minimization step: 812. Total energy = 16571.9933 kcal/mol (16566.7366 without restraints) Performing minimization step: 813. Total energy = 16559.9714 kcal/mol (16554.7176 without restraints) Performing minimization step: 814. Total energy = 16547.9711 kcal/mol (16542.7201 without restraints) Performing minimization step: 815. Total energy = 16535.9916 kcal/mol (16530.7434 without restraints) Performing minimization step: 816. Total energy = 16524.0336 kcal/mol (16518.7882 without restraints) Performing minimization step: 817. Total energy = 16512.0968 kcal/mol (16506.8545 without restraints) Performing minimization step: 818. Total energy = 16500.1814 kcal/mol (16494.9415 without restraints) Performing minimization step: 819. Total energy = 16488.2867 kcal/mol (16483.0498 without restraints) Performing minimization step: 820. Total energy = 16476.4134 kcal/mol (16471.1791 without restraints) Performing minimization step: 821. Total energy = 16464.5608 kcal/mol (16459.3293 without restraints) Performing minimization step: 822. Total energy = 16452.7291 kcal/mol (16447.5006 without restraints) Performing minimization step: 823. Total energy = 16440.9182 kcal/mol (16435.6923 without restraints) Performing minimization step: 824. Total energy = 16429.1280 kcal/mol (16423.9049 without restraints) Performing minimization step: 825. Total energy = 16417.3591 kcal/mol (16412.1387 without restraints) Performing minimization step: 826. Total energy = 16405.6106 kcal/mol (16400.3930 without restraints) Performing minimization step: 827. Total energy = 16393.8825 kcal/mol (16388.6677 without restraints) Performing minimization step: 828. Total energy = 16382.1752 kcal/mol (16376.9630 without restraints) Performing minimization step: 829. Total energy = 16370.4888 kcal/mol (16365.2797 without restraints) Performing minimization step: 830. Total energy = 16358.8225 kcal/mol (16353.6158 without restraints) Performing minimization step: 831. Total energy = 16347.1761 kcal/mol (16341.9721 without restraints) Performing minimization step: 832. Total energy = 16335.5499 kcal/mol (16330.3487 without restraints) Performing minimization step: 833. Total energy = 16323.9440 kcal/mol (16318.7454 without restraints) Performing minimization step: 834. Total energy = 16312.3583 kcal/mol (16307.1624 without restraints) Performing minimization step: 835. Total energy = 16300.7931 kcal/mol (16295.5998 without restraints) Performing minimization step: 836. Total energy = 16289.2480 kcal/mol (16284.0576 without restraints) Performing minimization step: 837. Total energy = 16277.7225 kcal/mol (16272.5346 without restraints) Performing minimization step: 838. Total energy = 16266.2171 kcal/mol (16261.0320 without restraints) Performing minimization step: 839. Total energy = 16254.7313 kcal/mol (16249.5488 without restraints) Performing minimization step: 840. Total energy = 16243.2657 kcal/mol (16238.0859 without restraints) Performing minimization step: 841. Total energy = 16231.8198 kcal/mol (16226.6427 without restraints) Performing minimization step: 842. Total energy = 16220.3941 kcal/mol (16215.2196 without restraints) Performing minimization step: 843. Total energy = 16208.9880 kcal/mol (16203.8162 without restraints) Performing minimization step: 844. Total energy = 16197.6015 kcal/mol (16192.4323 without restraints) Performing minimization step: 845. Total energy = 16186.2340 kcal/mol (16181.0677 without restraints) Performing minimization step: 846. Total energy = 16174.8863 kcal/mol (16169.7221 without restraints) Performing minimization step: 847. Total energy = 16163.5576 kcal/mol (16158.3963 without restraints) Performing minimization step: 848. Total energy = 16152.2494 kcal/mol (16147.0908 without restraints) Performing minimization step: 849. Total energy = 16140.9599 kcal/mol (16135.8038 without restraints) Performing minimization step: 850. Total energy = 16129.6896 kcal/mol (16124.5360 without restraints) Performing minimization step: 851. Total energy = 16118.4381 kcal/mol (16113.2872 without restraints) Performing minimization step: 852. Total energy = 16107.2063 kcal/mol (16102.0579 without restraints) Performing minimization step: 853. Total energy = 16095.9932 kcal/mol (16090.8475 without restraints) Performing minimization step: 854. Total energy = 16084.7992 kcal/mol (16079.6560 without restraints) Performing minimization step: 855. Total energy = 16073.6243 kcal/mol (16068.4837 without restraints) Performing minimization step: 856. Total energy = 16062.4682 kcal/mol (16057.3302 without restraints) Performing minimization step: 857. Total energy = 16051.3313 kcal/mol (16046.1957 without restraints) Performing minimization step: 858. Total energy = 16040.2130 kcal/mol (16035.0801 without restraints) Performing minimization step: 859. Total energy = 16029.1137 kcal/mol (16023.9832 without restraints) Performing minimization step: 860. Total energy = 16018.0330 kcal/mol (16012.9052 without restraints) Performing minimization step: 861. Total energy = 16006.9704 kcal/mol (16001.8451 without restraints) Performing minimization step: 862. Total energy = 15995.9267 kcal/mol (15990.8039 without restraints) Performing minimization step: 863. Total energy = 15984.9015 kcal/mol (15979.7813 without restraints) Performing minimization step: 864. Total energy = 15973.8950 kcal/mol (15968.7773 without restraints) Performing minimization step: 865. Total energy = 15962.9066 kcal/mol (15957.7916 without restraints) Performing minimization step: 866. Total energy = 15951.9370 kcal/mol (15946.8243 without restraints) Performing minimization step: 867. Total energy = 15940.9852 kcal/mol (15935.8750 without restraints) Performing minimization step: 868. Total energy = 15930.0526 kcal/mol (15924.9449 without restraints) Performing minimization step: 869. Total energy = 15919.1375 kcal/mol (15914.0323 without restraints) Performing minimization step: 870. Total energy = 15908.2406 kcal/mol (15903.1379 without restraints) Performing minimization step: 871. Total energy = 15897.3619 kcal/mol (15892.2617 without restraints) Performing minimization step: 872. Total energy = 15886.5012 kcal/mol (15881.4034 without restraints) Performing minimization step: 873. Total energy = 15875.6585 kcal/mol (15870.5633 without restraints) Performing minimization step: 874. Total energy = 15864.8340 kcal/mol (15859.7413 without restraints) Performing minimization step: 875. Total energy = 15854.0272 kcal/mol (15848.9369 without restraints) Performing minimization step: 876. Total energy = 15843.2384 kcal/mol (15838.1507 without restraints) Performing minimization step: 877. Total energy = 15832.4671 kcal/mol (15827.3817 without restraints) Performing minimization step: 878. Total energy = 15821.7138 kcal/mol (15816.6308 without restraints) Performing minimization step: 879. Total energy = 15810.9785 kcal/mol (15805.8980 without restraints) Performing minimization step: 880. Total energy = 15800.2612 kcal/mol (15795.1833 without restraints) Performing minimization step: 881. Total energy = 15789.5607 kcal/mol (15784.4851 without restraints) Performing minimization step: 882. Total energy = 15778.8775 kcal/mol (15773.8042 without restraints) Performing minimization step: 883. Total energy = 15768.2122 kcal/mol (15763.1414 without restraints) Performing minimization step: 884. Total energy = 15757.5643 kcal/mol (15752.4959 without restraints) Performing minimization step: 885. Total energy = 15746.9339 kcal/mol (15741.8679 without restraints) Performing minimization step: 886. Total energy = 15736.3205 kcal/mol (15731.2569 without restraints) Performing minimization step: 887. Total energy = 15725.7248 kcal/mol (15720.6636 without restraints) Performing minimization step: 888. Total energy = 15715.1462 kcal/mol (15710.0874 without restraints) Performing minimization step: 889. Total energy = 15704.5847 kcal/mol (15699.5283 without restraints) Performing minimization step: 890. Total energy = 15694.0402 kcal/mol (15688.9862 without restraints) Performing minimization step: 891. Total energy = 15683.5128 kcal/mol (15678.4611 without restraints) Performing minimization step: 892. Total energy = 15673.0029 kcal/mol (15667.9536 without restraints) Performing minimization step: 893. Total energy = 15662.5101 kcal/mol (15657.4631 without restraints) Performing minimization step: 894. Total energy = 15652.0335 kcal/mol (15646.9889 without restraints) Performing minimization step: 895. Total energy = 15641.5737 kcal/mol (15636.5315 without restraints) Performing minimization step: 896. Total energy = 15631.1312 kcal/mol (15626.0915 without restraints) Performing minimization step: 897. Total energy = 15620.7060 kcal/mol (15615.6685 without restraints) Performing minimization step: 898. Total energy = 15610.2974 kcal/mol (15605.2623 without restraints) Performing minimization step: 899. Total energy = 15599.9050 kcal/mol (15594.8723 without restraints) Performing minimization step: 900. Total energy = 15589.5295 kcal/mol (15584.4991 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 901. Total energy = 15579.1704 kcal/mol (15574.1423 without restraints) Performing minimization step: 902. Total energy = 15568.8277 kcal/mol (15563.8018 without restraints) Performing minimization step: 903. Total energy = 15558.5017 kcal/mol (15553.4783 without restraints) Performing minimization step: 904. Total energy = 15548.1922 kcal/mol (15543.1710 without restraints) Performing minimization step: 905. Total energy = 15537.8996 kcal/mol (15532.8807 without restraints) Performing minimization step: 906. Total energy = 15527.6229 kcal/mol (15522.6064 without restraints) Performing minimization step: 907. Total energy = 15517.3629 kcal/mol (15512.3488 without restraints) Performing minimization step: 908. Total energy = 15507.1193 kcal/mol (15502.1073 without restraints) Performing minimization step: 909. Total energy = 15496.8915 kcal/mol (15491.8819 without restraints) Performing minimization step: 910. Total energy = 15486.6804 kcal/mol (15481.6732 without restraints) Performing minimization step: 911. Total energy = 15476.4858 kcal/mol (15471.4808 without restraints) Performing minimization step: 912. Total energy = 15466.3066 kcal/mol (15461.3040 without restraints) Performing minimization step: 913. Total energy = 15456.1433 kcal/mol (15451.1427 without restraints) Performing minimization step: 914. Total energy = 15445.9964 kcal/mol (15440.9985 without restraints) Performing minimization step: 915. Total energy = 15435.8657 kcal/mol (15430.8697 without restraints) Performing minimization step: 916. Total energy = 15425.7501 kcal/mol (15420.7563 without restraints) Performing minimization step: 917. Total energy = 15415.6506 kcal/mol (15410.6592 without restraints) Performing minimization step: 918. Total energy = 15405.5669 kcal/mol (15400.5777 without restraints) Performing minimization step: 919. Total energy = 15395.4994 kcal/mol (15390.5124 without restraints) Performing minimization step: 920. Total energy = 15385.4472 kcal/mol (15380.4625 without restraints) Performing minimization step: 921. Total energy = 15375.4105 kcal/mol (15370.4280 without restraints) Performing minimization step: 922. Total energy = 15365.3895 kcal/mol (15360.4093 without restraints) Performing minimization step: 923. Total energy = 15355.3841 kcal/mol (15350.4058 without restraints) Performing minimization step: 924. Total energy = 15345.3944 kcal/mol (15340.4185 without restraints) Performing minimization step: 925. Total energy = 15335.4202 kcal/mol (15330.4466 without restraints) Performing minimization step: 926. Total energy = 15325.4613 kcal/mol (15320.4900 without restraints) Performing minimization step: 927. Total energy = 15315.5181 kcal/mol (15310.5489 without restraints) Performing minimization step: 928. Total energy = 15305.5906 kcal/mol (15300.6236 without restraints) Performing minimization step: 929. Total energy = 15295.6779 kcal/mol (15290.7130 without restraints) Performing minimization step: 930. Total energy = 15285.7807 kcal/mol (15280.8181 without restraints) Performing minimization step: 931. Total energy = 15275.8991 kcal/mol (15270.9387 without restraints) Performing minimization step: 932. Total energy = 15266.0324 kcal/mol (15261.0741 without restraints) Performing minimization step: 933. Total energy = 15256.1805 kcal/mol (15251.2242 without restraints) Performing minimization step: 934. Total energy = 15246.3437 kcal/mol (15241.3899 without restraints) Performing minimization step: 935. Total energy = 15236.5224 kcal/mol (15231.5707 without restraints) Performing minimization step: 936. Total energy = 15226.7159 kcal/mol (15221.7664 without restraints) Performing minimization step: 937. Total energy = 15216.9244 kcal/mol (15211.9771 without restraints) Performing minimization step: 938. Total energy = 15207.1480 kcal/mol (15202.2028 without restraints) Performing minimization step: 939. Total energy = 15197.3864 kcal/mol (15192.4435 without restraints) Performing minimization step: 940. Total energy = 15187.6401 kcal/mol (15182.6992 without restraints) Performing minimization step: 941. Total energy = 15177.9080 kcal/mol (15172.9693 without restraints) Performing minimization step: 942. Total energy = 15168.1911 kcal/mol (15163.2546 without restraints) Performing minimization step: 943. Total energy = 15158.4887 kcal/mol (15153.5543 without restraints) Performing minimization step: 944. Total energy = 15148.8011 kcal/mol (15143.8688 without restraints) Performing minimization step: 945. Total energy = 15139.1286 kcal/mol (15134.1984 without restraints) Performing minimization step: 946. Total energy = 15129.4702 kcal/mol (15124.5421 without restraints) Performing minimization step: 947. Total energy = 15119.8265 kcal/mol (15114.9007 without restraints) Performing minimization step: 948. Total energy = 15110.1970 kcal/mol (15105.2731 without restraints) Performing minimization step: 949. Total energy = 15100.5823 kcal/mol (15095.6607 without restraints) Performing minimization step: 950. Total energy = 15090.9824 kcal/mol (15086.0629 without restraints) Performing minimization step: 951. Total energy = 15081.3970 kcal/mol (15076.4795 without restraints) Performing minimization step: 952. Total energy = 15071.8255 kcal/mol (15066.9102 without restraints) Performing minimization step: 953. Total energy = 15062.2691 kcal/mol (15057.3558 without restraints) Performing minimization step: 954. Total energy = 15052.7265 kcal/mol (15047.8154 without restraints) Performing minimization step: 955. Total energy = 15043.1984 kcal/mol (15038.2894 without restraints) Performing minimization step: 956. Total energy = 15033.6842 kcal/mol (15028.7772 without restraints) Performing minimization step: 957. Total energy = 15024.1842 kcal/mol (15019.2793 without restraints) Performing minimization step: 958. Total energy = 15014.6986 kcal/mol (15009.7962 without restraints) Performing minimization step: 959. Total energy = 15005.2273 kcal/mol (15000.3265 without restraints) Performing minimization step: 960. Total energy = 14995.7694 kcal/mol (14990.8708 without restraints) Performing minimization step: 961. Total energy = 14986.3259 kcal/mol (14981.4293 without restraints) Performing minimization step: 962. Total energy = 14976.8971 kcal/mol (14972.0026 without restraints) Performing minimization step: 963. Total energy = 14967.4814 kcal/mol (14962.5889 without restraints) Performing minimization step: 964. Total energy = 14958.0797 kcal/mol (14953.1893 without restraints) Performing minimization step: 965. Total energy = 14948.6917 kcal/mol (14943.8034 without restraints) Performing minimization step: 966. Total energy = 14939.3177 kcal/mol (14934.4314 without restraints) Performing minimization step: 967. Total energy = 14929.9578 kcal/mol (14925.0737 without restraints) Performing minimization step: 968. Total energy = 14920.6113 kcal/mol (14915.7290 without restraints) Performing minimization step: 969. Total energy = 14911.2787 kcal/mol (14906.3987 without restraints) Performing minimization step: 970. Total energy = 14901.9603 kcal/mol (14897.0822 without restraints) Performing minimization step: 971. Total energy = 14892.6552 kcal/mol (14887.7791 without restraints) Performing minimization step: 972. Total energy = 14883.3633 kcal/mol (14878.4893 without restraints) Performing minimization step: 973. Total energy = 14874.0852 kcal/mol (14869.2132 without restraints) Performing minimization step: 974. Total energy = 14864.8208 kcal/mol (14859.9508 without restraints) Performing minimization step: 975. Total energy = 14855.5700 kcal/mol (14850.7021 without restraints) Performing minimization step: 976. Total energy = 14846.3325 kcal/mol (14841.4665 without restraints) Performing minimization step: 977. Total energy = 14837.1087 kcal/mol (14832.2447 without restraints) Performing minimization step: 978. Total energy = 14827.8984 kcal/mol (14823.0365 without restraints) Performing minimization step: 979. Total energy = 14818.7010 kcal/mol (14813.8410 without restraints) Performing minimization step: 980. Total energy = 14809.5169 kcal/mol (14804.6589 without restraints) Performing minimization step: 981. Total energy = 14800.3466 kcal/mol (14795.4907 without restraints) Performing minimization step: 982. Total energy = 14791.1896 kcal/mol (14786.3357 without restraints) Performing minimization step: 983. Total energy = 14782.0460 kcal/mol (14777.1941 without restraints) Performing minimization step: 984. Total energy = 14772.9152 kcal/mol (14768.0653 without restraints) Performing minimization step: 985. Total energy = 14763.7976 kcal/mol (14758.9496 without restraints) Performing minimization step: 986. Total energy = 14754.6927 kcal/mol (14749.8468 without restraints) Performing minimization step: 987. Total energy = 14745.6015 kcal/mol (14740.7574 without restraints) Performing minimization step: 988. Total energy = 14736.5231 kcal/mol (14731.6811 without restraints) Performing minimization step: 989. Total energy = 14727.4581 kcal/mol (14722.6180 without restraints) Performing minimization step: 990. Total energy = 14718.4054 kcal/mol (14713.5673 without restraints) Performing minimization step: 991. Total energy = 14709.3663 kcal/mol (14704.5301 without restraints) Performing minimization step: 992. Total energy = 14700.3396 kcal/mol (14695.5053 without restraints) Performing minimization step: 993. Total energy = 14691.3261 kcal/mol (14686.4938 without restraints) Performing minimization step: 994. Total energy = 14682.3257 kcal/mol (14677.4954 without restraints) Performing minimization step: 995. Total energy = 14673.3379 kcal/mol (14668.5096 without restraints) Performing minimization step: 996. Total energy = 14664.3629 kcal/mol (14659.5365 without restraints) Performing minimization step: 997. Total energy = 14655.4007 kcal/mol (14650.5762 without restraints) Performing minimization step: 998. Total energy = 14646.4514 kcal/mol (14641.6289 without restraints) Performing minimization step: 999. Total energy = 14637.5149 kcal/mol (14632.6944 without restraints) Performing minimization step: 1000. Total energy = 14628.5903 kcal/mol (14623.7714 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 14619.6784 kcal/mol (14614.8616 without restraints) Performing minimization step: 1002. Total energy = 14610.7795 kcal/mol (14605.9647 without restraints) Performing minimization step: 1003. Total energy = 14601.8931 kcal/mol (14597.0802 without restraints) Performing minimization step: 1004. Total energy = 14593.0196 kcal/mol (14588.2084 without restraints) Performing minimization step: 1005. Total energy = 14584.1581 kcal/mol (14579.3490 without restraints) Performing minimization step: 1006. Total energy = 14575.3090 kcal/mol (14570.5018 without restraints) Performing minimization step: 1007. Total energy = 14566.4726 kcal/mol (14561.6673 without restraints) Performing minimization step: 1008. Total energy = 14557.6489 kcal/mol (14552.8456 without restraints) Performing minimization step: 1009. Total energy = 14548.8377 kcal/mol (14544.0361 without restraints) Performing minimization step: 1010. Total energy = 14540.0383 kcal/mol (14535.2388 without restraints) Performing minimization step: 1011. Total energy = 14531.2513 kcal/mol (14526.4537 without restraints) Performing minimization step: 1012. Total energy = 14522.4768 kcal/mol (14517.6812 without restraints) Performing minimization step: 1013. Total energy = 14513.7146 kcal/mol (14508.9208 without restraints) Performing minimization step: 1014. Total energy = 14504.9643 kcal/mol (14500.1723 without restraints) Performing minimization step: 1015. Total energy = 14496.2264 kcal/mol (14491.4363 without restraints) Performing minimization step: 1016. Total energy = 14487.5003 kcal/mol (14482.7121 without restraints) Performing minimization step: 1017. Total energy = 14478.7866 kcal/mol (14474.0002 without restraints) Performing minimization step: 1018. Total energy = 14470.0852 kcal/mol (14465.3007 without restraints) Performing minimization step: 1019. Total energy = 14461.3951 kcal/mol (14456.6126 without restraints) Performing minimization step: 1020. Total energy = 14452.7175 kcal/mol (14447.9367 without restraints) Performing minimization step: 1021. Total energy = 14444.0515 kcal/mol (14439.2726 without restraints) Performing minimization step: 1022. Total energy = 14435.3981 kcal/mol (14430.6211 without restraints) Performing minimization step: 1023. Total energy = 14426.7566 kcal/mol (14421.9814 without restraints) Performing minimization step: 1024. Total energy = 14418.1269 kcal/mol (14413.3536 without restraints) Performing minimization step: 1025. Total energy = 14409.5089 kcal/mol (14404.7373 without restraints) Performing minimization step: 1026. Total energy = 14400.9028 kcal/mol (14396.1332 without restraints) Performing minimization step: 1027. Total energy = 14392.3090 kcal/mol (14387.5414 without restraints) Performing minimization step: 1028. Total energy = 14383.7267 kcal/mol (14378.9608 without restraints) Performing minimization step: 1029. Total energy = 14375.1560 kcal/mol (14370.3919 without restraints) Performing minimization step: 1030. Total energy = 14366.5972 kcal/mol (14361.8350 without restraints) Performing minimization step: 1031. Total energy = 14358.0497 kcal/mol (14353.2893 without restraints) Performing minimization step: 1032. Total energy = 14349.5138 kcal/mol (14344.7551 without restraints) Performing minimization step: 1033. Total energy = 14340.9896 kcal/mol (14336.2328 without restraints) Performing minimization step: 1034. Total energy = 14332.4770 kcal/mol (14327.7221 without restraints) Performing minimization step: 1035. Total energy = 14323.9765 kcal/mol (14319.2236 without restraints) Performing minimization step: 1036. Total energy = 14315.4871 kcal/mol (14310.7358 without restraints) Performing minimization step: 1037. Total energy = 14307.0095 kcal/mol (14302.2601 without restraints) Performing minimization step: 1038. Total energy = 14298.5436 kcal/mol (14293.7960 without restraints) Performing minimization step: 1039. Total energy = 14290.0889 kcal/mol (14285.3429 without restraints) Performing minimization step: 1040. Total energy = 14281.6456 kcal/mol (14276.9015 without restraints) Performing minimization step: 1041. Total energy = 14273.2135 kcal/mol (14268.4712 without restraints) Performing minimization step: 1042. Total energy = 14264.7931 kcal/mol (14260.0528 without restraints) Performing minimization step: 1043. Total energy = 14256.3846 kcal/mol (14251.6460 without restraints) Performing minimization step: 1044. Total energy = 14247.9868 kcal/mol (14243.2500 without restraints) Performing minimization step: 1045. Total energy = 14239.6005 kcal/mol (14234.8655 without restraints) Performing minimization step: 1046. Total energy = 14231.2246 kcal/mol (14226.4914 without restraints) Performing minimization step: 1047. Total energy = 14222.8606 kcal/mol (14218.1292 without restraints) Performing minimization step: 1048. Total energy = 14214.5080 kcal/mol (14209.7783 without restraints) Performing minimization step: 1049. Total energy = 14206.1667 kcal/mol (14201.4390 without restraints) Performing minimization step: 1050. Total energy = 14197.8365 kcal/mol (14193.1105 without restraints) Performing minimization step: 1051. Total energy = 14189.5171 kcal/mol (14184.7928 without restraints) Performing minimization step: 1052. Total energy = 14181.2096 kcal/mol (14176.4871 without restraints) Performing minimization step: 1053. Total energy = 14172.9129 kcal/mol (14168.1922 without restraints) Performing minimization step: 1054. Total energy = 14164.6273 kcal/mol (14159.9084 without restraints) Performing minimization step: 1055. Total energy = 14156.3530 kcal/mol (14151.6358 without restraints) Performing minimization step: 1056. Total energy = 14148.0893 kcal/mol (14143.3739 without restraints) Performing minimization step: 1057. Total energy = 14139.8364 kcal/mol (14135.1227 without restraints) Performing minimization step: 1058. Total energy = 14131.5944 kcal/mol (14126.8825 without restraints) Performing minimization step: 1059. Total energy = 14123.3638 kcal/mol (14118.6537 without restraints) Performing minimization step: 1060. Total energy = 14115.1437 kcal/mol (14110.4353 without restraints) Performing minimization step: 1061. Total energy = 14106.9350 kcal/mol (14102.2285 without restraints) Performing minimization step: 1062. Total energy = 14098.7369 kcal/mol (14094.0322 without restraints) Performing minimization step: 1063. Total energy = 14090.5493 kcal/mol (14085.8462 without restraints) Performing minimization step: 1064. Total energy = 14082.3728 kcal/mol (14077.6714 without restraints) Performing minimization step: 1065. Total energy = 14074.2068 kcal/mol (14069.5072 without restraints) Performing minimization step: 1066. Total energy = 14066.0519 kcal/mol (14061.3540 without restraints) Performing minimization step: 1067. Total energy = 14057.9076 kcal/mol (14053.2115 without restraints) Performing minimization step: 1068. Total energy = 14049.7741 kcal/mol (14045.0797 without restraints) Performing minimization step: 1069. Total energy = 14041.6513 kcal/mol (14036.9588 without restraints) Performing minimization step: 1070. Total energy = 14033.5395 kcal/mol (14028.8485 without restraints) Performing minimization step: 1071. Total energy = 14025.4379 kcal/mol (14020.7487 without restraints) Performing minimization step: 1072. Total energy = 14017.3470 kcal/mol (14012.6595 without restraints) Performing minimization step: 1073. Total energy = 14009.2666 kcal/mol (14004.5809 without restraints) Performing minimization step: 1074. Total energy = 14001.1965 kcal/mol (13996.5125 without restraints) Performing minimization step: 1075. Total energy = 13993.1370 kcal/mol (13988.4547 without restraints) Performing minimization step: 1076. Total energy = 13985.0882 kcal/mol (13980.4076 without restraints) Performing minimization step: 1077. Total energy = 13977.0500 kcal/mol (13972.3711 without restraints) Performing minimization step: 1078. Total energy = 13969.0224 kcal/mol (13964.3453 without restraints) Performing minimization step: 1079. Total energy = 13961.0050 kcal/mol (13956.3296 without restraints) Performing minimization step: 1080. Total energy = 13952.9986 kcal/mol (13948.3248 without restraints) Performing minimization step: 1081. Total energy = 13945.0019 kcal/mol (13940.3299 without restraints) Performing minimization step: 1082. Total energy = 13937.0157 kcal/mol (13932.3454 without restraints) Performing minimization step: 1083. Total energy = 13929.0400 kcal/mol (13924.3713 without restraints) Performing minimization step: 1084. Total energy = 13921.0745 kcal/mol (13916.4076 without restraints) Performing minimization step: 1085. Total energy = 13913.1192 kcal/mol (13908.4539 without restraints) Performing minimization step: 1086. Total energy = 13905.1746 kcal/mol (13900.5112 without restraints) Performing minimization step: 1087. Total energy = 13897.2402 kcal/mol (13892.5783 without restraints) Performing minimization step: 1088. Total energy = 13889.3161 kcal/mol (13884.6559 without restraints) Performing minimization step: 1089. Total energy = 13881.4018 kcal/mol (13876.7434 without restraints) Performing minimization step: 1090. Total energy = 13873.4979 kcal/mol (13868.8410 without restraints) Performing minimization step: 1091. Total energy = 13865.6041 kcal/mol (13860.9490 without restraints) Performing minimization step: 1092. Total energy = 13857.7204 kcal/mol (13853.0669 without restraints) Performing minimization step: 1093. Total energy = 13849.8468 kcal/mol (13845.1951 without restraints) Performing minimization step: 1094. Total energy = 13841.9834 kcal/mol (13837.3335 without restraints) Performing minimization step: 1095. Total energy = 13834.1307 kcal/mol (13829.4823 without restraints) Performing minimization step: 1096. Total energy = 13826.2873 kcal/mol (13821.6404 without restraints) Performing minimization step: 1097. Total energy = 13818.4535 kcal/mol (13813.8084 without restraints) Performing minimization step: 1098. Total energy = 13810.6301 kcal/mol (13805.9867 without restraints) Performing minimization step: 1099. Total energy = 13802.8171 kcal/mol (13798.1755 without restraints) Performing minimization step: 1100. Total energy = 13795.0138 kcal/mol (13790.3738 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 13787.2203 kcal/mol (13782.5820 without restraints) Performing minimization step: 1102. Total energy = 13779.4373 kcal/mol (13774.8005 without restraints) Performing minimization step: 1103. Total energy = 13771.6637 kcal/mol (13767.0286 without restraints) Performing minimization step: 1104. Total energy = 13763.8997 kcal/mol (13759.2663 without restraints) Performing minimization step: 1105. Total energy = 13756.1456 kcal/mol (13751.5138 without restraints) Performing minimization step: 1106. Total energy = 13748.4013 kcal/mol (13743.7712 without restraints) Performing minimization step: 1107. Total energy = 13740.6670 kcal/mol (13736.0386 without restraints) Performing minimization step: 1108. Total energy = 13732.9426 kcal/mol (13728.3158 without restraints) Performing minimization step: 1109. Total energy = 13725.2277 kcal/mol (13720.6026 without restraints) Performing minimization step: 1110. Total energy = 13717.5225 kcal/mol (13712.8989 without restraints) Performing minimization step: 1111. Total energy = 13709.8273 kcal/mol (13705.2054 without restraints) Performing minimization step: 1112. Total energy = 13702.1418 kcal/mol (13697.5215 without restraints) Performing minimization step: 1113. Total energy = 13694.4657 kcal/mol (13689.8471 without restraints) Performing minimization step: 1114. Total energy = 13686.7995 kcal/mol (13682.1825 without restraints) Performing minimization step: 1115. Total energy = 13679.1427 kcal/mol (13674.5273 without restraints) Performing minimization step: 1116. Total energy = 13671.4958 kcal/mol (13666.8821 without restraints) Performing minimization step: 1117. Total energy = 13663.8587 kcal/mol (13659.2466 without restraints) Performing minimization step: 1118. Total energy = 13656.2312 kcal/mol (13651.6207 without restraints) Performing minimization step: 1119. Total energy = 13648.6137 kcal/mol (13644.0048 without restraints) Performing minimization step: 1120. Total energy = 13641.0051 kcal/mol (13636.3980 without restraints) Performing minimization step: 1121. Total energy = 13633.4060 kcal/mol (13628.8004 without restraints) Performing minimization step: 1122. Total energy = 13625.8164 kcal/mol (13621.2124 without restraints) Performing minimization step: 1123. Total energy = 13618.2365 kcal/mol (13613.6341 without restraints) Performing minimization step: 1124. Total energy = 13610.6656 kcal/mol (13606.0649 without restraints) Performing minimization step: 1125. Total energy = 13603.1050 kcal/mol (13598.5059 without restraints) Performing minimization step: 1126. Total energy = 13595.5533 kcal/mol (13590.9556 without restraints) Performing minimization step: 1127. Total energy = 13588.0108 kcal/mol (13583.4148 without restraints) Performing minimization step: 1128. Total energy = 13580.4780 kcal/mol (13575.8837 without restraints) Performing minimization step: 1129. Total energy = 13572.9543 kcal/mol (13568.3616 without restraints) Performing minimization step: 1130. Total energy = 13565.4403 kcal/mol (13560.8493 without restraints) Performing minimization step: 1131. Total energy = 13557.9352 kcal/mol (13553.3457 without restraints) Performing minimization step: 1132. Total energy = 13550.4393 kcal/mol (13545.8514 without restraints) Performing minimization step: 1133. Total energy = 13542.9534 kcal/mol (13538.3670 without restraints) Performing minimization step: 1134. Total energy = 13535.4761 kcal/mol (13530.8915 without restraints) Performing minimization step: 1135. Total energy = 13528.0088 kcal/mol (13523.4256 without restraints) Performing minimization step: 1136. Total energy = 13520.5501 kcal/mol (13515.9686 without restraints) Performing minimization step: 1137. Total energy = 13513.1012 kcal/mol (13508.5213 without restraints) Performing minimization step: 1138. Total energy = 13505.6606 kcal/mol (13501.0823 without restraints) Performing minimization step: 1139. Total energy = 13498.2293 kcal/mol (13493.6526 without restraints) Performing minimization step: 1140. Total energy = 13490.8073 kcal/mol (13486.2321 without restraints) Performing minimization step: 1141. Total energy = 13483.3944 kcal/mol (13478.8209 without restraints) Performing minimization step: 1142. Total energy = 13475.9908 kcal/mol (13471.4187 without restraints) Performing minimization step: 1143. Total energy = 13468.5956 kcal/mol (13464.0252 without restraints) Performing minimization step: 1144. Total energy = 13461.2105 kcal/mol (13456.6416 without restraints) Performing minimization step: 1145. Total energy = 13453.8341 kcal/mol (13449.2668 without restraints) Performing minimization step: 1146. Total energy = 13446.4665 kcal/mol (13441.9009 without restraints) Performing minimization step: 1147. Total energy = 13439.1083 kcal/mol (13434.5443 without restraints) Performing minimization step: 1148. Total energy = 13431.7589 kcal/mol (13427.1963 without restraints) Performing minimization step: 1149. Total energy = 13424.4186 kcal/mol (13419.8577 without restraints) Performing minimization step: 1150. Total energy = 13417.0873 kcal/mol (13412.5279 without restraints) Performing minimization step: 1151. Total energy = 13409.7645 kcal/mol (13405.2066 without restraints) Performing minimization step: 1152. Total energy = 13402.4509 kcal/mol (13397.8947 without restraints) Performing minimization step: 1153. Total energy = 13395.1463 kcal/mol (13390.5916 without restraints) Performing minimization step: 1154. Total energy = 13387.8507 kcal/mol (13383.2975 without restraints) Performing minimization step: 1155. Total energy = 13380.5642 kcal/mol (13376.0127 without restraints) Performing minimization step: 1156. Total energy = 13373.2861 kcal/mol (13368.7361 without restraints) Performing minimization step: 1157. Total energy = 13366.0170 kcal/mol (13361.4685 without restraints) Performing minimization step: 1158. Total energy = 13358.7569 kcal/mol (13354.2099 without restraints) Performing minimization step: 1159. Total energy = 13351.5054 kcal/mol (13346.9600 without restraints) Performing minimization step: 1160. Total energy = 13344.2627 kcal/mol (13339.7188 without restraints) Performing minimization step: 1161. Total energy = 13337.0288 kcal/mol (13332.4865 without restraints) Performing minimization step: 1162. Total energy = 13329.8039 kcal/mol (13325.2632 without restraints) Performing minimization step: 1163. Total energy = 13322.5876 kcal/mol (13318.0486 without restraints) Performing minimization step: 1164. Total energy = 13315.3791 kcal/mol (13310.8412 without restraints) Performing minimization step: 1165. Total energy = 13308.1799 kcal/mol (13303.6439 without restraints) Performing minimization step: 1166. Total energy = 13300.9897 kcal/mol (13296.4553 without restraints) Performing minimization step: 1167. Total energy = 13293.8082 kcal/mol (13289.2752 without restraints) Performing minimization step: 1168. Total energy = 13286.6352 kcal/mol (13282.1038 without restraints) Performing minimization step: 1169. Total energy = 13279.4709 kcal/mol (13274.9410 without restraints) Performing minimization step: 1170. Total energy = 13272.3150 kcal/mol (13267.7865 without restraints) Performing minimization step: 1171. Total energy = 13265.1677 kcal/mol (13260.6409 without restraints) Performing minimization step: 1172. Total energy = 13258.0291 kcal/mol (13253.5038 without restraints) Performing minimization step: 1173. Total energy = 13250.8985 kcal/mol (13246.3746 without restraints) Performing minimization step: 1174. Total energy = 13243.7767 kcal/mol (13239.2545 without restraints) Performing minimization step: 1175. Total energy = 13236.6640 kcal/mol (13232.1431 without restraints) Performing minimization step: 1176. Total energy = 13229.5602 kcal/mol (13225.0412 without restraints) Performing minimization step: 1177. Total energy = 13222.4649 kcal/mol (13217.9472 without restraints) Performing minimization step: 1178. Total energy = 13215.3773 kcal/mol (13210.8612 without restraints) Performing minimization step: 1179. Total energy = 13208.2984 kcal/mol (13203.7837 without restraints) Performing minimization step: 1180. Total energy = 13201.2284 kcal/mol (13196.7153 without restraints) Performing minimization step: 1181. Total energy = 13194.1666 kcal/mol (13189.6550 without restraints) Performing minimization step: 1182. Total energy = 13187.1134 kcal/mol (13182.6033 without restraints) Performing minimization step: 1183. Total energy = 13180.0689 kcal/mol (13175.5603 without restraints) Performing minimization step: 1184. Total energy = 13173.0318 kcal/mol (13168.5247 without restraints) Performing minimization step: 1185. Total energy = 13166.0032 kcal/mol (13161.4976 without restraints) Performing minimization step: 1186. Total energy = 13158.9828 kcal/mol (13154.4788 without restraints) Performing minimization step: 1187. Total energy = 13151.9707 kcal/mol (13147.4680 without restraints) Performing minimization step: 1188. Total energy = 13144.9671 kcal/mol (13140.4661 without restraints) Performing minimization step: 1189. Total energy = 13137.9723 kcal/mol (13133.4728 without restraints) Performing minimization step: 1190. Total energy = 13130.9856 kcal/mol (13126.4876 without restraints) Performing minimization step: 1191. Total energy = 13124.0075 kcal/mol (13119.5110 without restraints) Performing minimization step: 1192. Total energy = 13117.0373 kcal/mol (13112.5423 without restraints) Performing minimization step: 1193. Total energy = 13110.0752 kcal/mol (13105.5817 without restraints) Performing minimization step: 1194. Total energy = 13103.1216 kcal/mol (13098.6297 without restraints) Performing minimization step: 1195. Total energy = 13096.1766 kcal/mol (13091.6861 without restraints) Performing minimization step: 1196. Total energy = 13089.2393 kcal/mol (13084.7503 without restraints) Performing minimization step: 1197. Total energy = 13082.3104 kcal/mol (13077.8229 without restraints) Performing minimization step: 1198. Total energy = 13075.3899 kcal/mol (13070.9041 without restraints) Performing minimization step: 1199. Total energy = 13068.4771 kcal/mol (13063.9925 without restraints) Performing minimization step: 1200. Total energy = 13061.5728 kcal/mol (13057.0898 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 13054.6762 kcal/mol (13050.1946 without restraints) Performing minimization step: 1202. Total energy = 13047.7876 kcal/mol (13043.3077 without restraints) Performing minimization step: 1203. Total energy = 13040.9076 kcal/mol (13036.4291 without restraints) Performing minimization step: 1204. Total energy = 13034.0359 kcal/mol (13029.5590 without restraints) Performing minimization step: 1205. Total energy = 13027.1721 kcal/mol (13022.6966 without restraints) Performing minimization step: 1206. Total energy = 13020.3163 kcal/mol (13015.8422 without restraints) Performing minimization step: 1207. Total energy = 13013.4686 kcal/mol (13008.9960 without restraints) Performing minimization step: 1208. Total energy = 13006.6286 kcal/mol (13002.1575 without restraints) Performing minimization step: 1209. Total energy = 12999.7968 kcal/mol (12995.3272 without restraints) Performing minimization step: 1210. Total energy = 12992.9732 kcal/mol (12988.5050 without restraints) Performing minimization step: 1211. Total energy = 12986.1570 kcal/mol (12981.6902 without restraints) Performing minimization step: 1212. Total energy = 12979.3491 kcal/mol (12974.8838 without restraints) Performing minimization step: 1213. Total energy = 12972.5487 kcal/mol (12968.0848 without restraints) Performing minimization step: 1214. Total energy = 12965.7566 kcal/mol (12961.2943 without restraints) Performing minimization step: 1215. Total energy = 12958.9728 kcal/mol (12954.5119 without restraints) Performing minimization step: 1216. Total energy = 12952.1968 kcal/mol (12947.7375 without restraints) Performing minimization step: 1217. Total energy = 12945.4288 kcal/mol (12940.9709 without restraints) Performing minimization step: 1218. Total energy = 12938.6685 kcal/mol (12934.2121 without restraints) Performing minimization step: 1219. Total energy = 12931.9161 kcal/mol (12927.4610 without restraints) Performing minimization step: 1220. Total energy = 12925.1714 kcal/mol (12920.7180 without restraints) Performing minimization step: 1221. Total energy = 12918.4349 kcal/mol (12913.9829 without restraints) Performing minimization step: 1222. Total energy = 12911.7060 kcal/mol (12907.2555 without restraints) Performing minimization step: 1223. Total energy = 12904.9850 kcal/mol (12900.5359 without restraints) Performing minimization step: 1224. Total energy = 12898.2719 kcal/mol (12893.8243 without restraints) Performing minimization step: 1225. Total energy = 12891.5662 kcal/mol (12887.1199 without restraints) Performing minimization step: 1226. Total energy = 12884.8689 kcal/mol (12880.4242 without restraints) Performing minimization step: 1227. Total energy = 12878.1789 kcal/mol (12873.7355 without restraints) Performing minimization step: 1228. Total energy = 12871.4961 kcal/mol (12867.0543 without restraints) Performing minimization step: 1229. Total energy = 12864.8219 kcal/mol (12860.3814 without restraints) Performing minimization step: 1230. Total energy = 12858.1551 kcal/mol (12853.7162 without restraints) Performing minimization step: 1231. Total energy = 12851.4966 kcal/mol (12847.0592 without restraints) Performing minimization step: 1232. Total energy = 12844.8456 kcal/mol (12840.4096 without restraints) Performing minimization step: 1233. Total energy = 12838.2025 kcal/mol (12833.7682 without restraints) Performing minimization step: 1234. Total energy = 12831.5670 kcal/mol (12827.1339 without restraints) Performing minimization step: 1235. Total energy = 12824.9387 kcal/mol (12820.5071 without restraints) Performing minimization step: 1236. Total energy = 12818.3180 kcal/mol (12813.8877 without restraints) Performing minimization step: 1237. Total energy = 12811.7053 kcal/mol (12807.2766 without restraints) Performing minimization step: 1238. Total energy = 12805.1005 kcal/mol (12800.6731 without restraints) Performing minimization step: 1239. Total energy = 12798.5031 kcal/mol (12794.0772 without restraints) Performing minimization step: 1240. Total energy = 12791.9129 kcal/mol (12787.4884 without restraints) Performing minimization step: 1241. Total energy = 12785.3297 kcal/mol (12780.9068 without restraints) Performing minimization step: 1242. Total energy = 12778.7549 kcal/mol (12774.3334 without restraints) Performing minimization step: 1243. Total energy = 12772.1875 kcal/mol (12767.7674 without restraints) Performing minimization step: 1244. Total energy = 12765.6276 kcal/mol (12761.2088 without restraints) Performing minimization step: 1245. Total energy = 12759.0750 kcal/mol (12754.6578 without restraints) Performing minimization step: 1246. Total energy = 12752.5303 kcal/mol (12748.1145 without restraints) Performing minimization step: 1247. Total energy = 12745.9930 kcal/mol (12741.5786 without restraints) Performing minimization step: 1248. Total energy = 12739.4627 kcal/mol (12735.0497 without restraints) Performing minimization step: 1249. Total energy = 12732.9402 kcal/mol (12728.5287 without restraints) Performing minimization step: 1250. Total energy = 12726.4254 kcal/mol (12722.0153 without restraints) Performing minimization step: 1251. Total energy = 12719.9178 kcal/mol (12715.5091 without restraints) Performing minimization step: 1252. Total energy = 12713.4177 kcal/mol (12709.0104 without restraints) Performing minimization step: 1253. Total energy = 12706.9249 kcal/mol (12702.5191 without restraints) Performing minimization step: 1254. Total energy = 12700.4397 kcal/mol (12696.0353 without restraints) Performing minimization step: 1255. Total energy = 12693.9619 kcal/mol (12689.5589 without restraints) Performing minimization step: 1256. Total energy = 12687.4917 kcal/mol (12683.0901 without restraints) Performing minimization step: 1257. Total energy = 12681.0286 kcal/mol (12676.6284 without restraints) Performing minimization step: 1258. Total energy = 12674.5729 kcal/mol (12670.1743 without restraints) Performing minimization step: 1259. Total energy = 12668.1247 kcal/mol (12663.7275 without restraints) Performing minimization step: 1260. Total energy = 12661.6839 kcal/mol (12657.2880 without restraints) Performing minimization step: 1261. Total energy = 12655.2502 kcal/mol (12650.8558 without restraints) Performing minimization step: 1262. Total energy = 12648.8238 kcal/mol (12644.4308 without restraints) Performing minimization step: 1263. Total energy = 12642.4052 kcal/mol (12638.0136 without restraints) Performing minimization step: 1264. Total energy = 12635.9936 kcal/mol (12631.6034 without restraints) Performing minimization step: 1265. Total energy = 12629.5891 kcal/mol (12625.2003 without restraints) Performing minimization step: 1266. Total energy = 12623.1920 kcal/mol (12618.8047 without restraints) Performing minimization step: 1267. Total energy = 12616.8021 kcal/mol (12612.4162 without restraints) Performing minimization step: 1268. Total energy = 12610.4194 kcal/mol (12606.0348 without restraints) Performing minimization step: 1269. Total energy = 12604.0439 kcal/mol (12599.6607 without restraints) Performing minimization step: 1270. Total energy = 12597.6761 kcal/mol (12593.2943 without restraints) Performing minimization step: 1271. Total energy = 12591.3152 kcal/mol (12586.9349 without restraints) Performing minimization step: 1272. Total energy = 12584.9610 kcal/mol (12580.5820 without restraints) Performing minimization step: 1273. Total energy = 12578.6145 kcal/mol (12574.2368 without restraints) Performing minimization step: 1274. Total energy = 12572.2745 kcal/mol (12567.8985 without restraints) Performing minimization step: 1275. Total energy = 12565.9422 kcal/mol (12561.5675 without restraints) Performing minimization step: 1276. Total energy = 12559.6170 kcal/mol (12555.2437 without restraints) Performing minimization step: 1277. Total energy = 12553.2988 kcal/mol (12548.9268 without restraints) Performing minimization step: 1278. Total energy = 12546.9879 kcal/mol (12542.6174 without restraints) Performing minimization step: 1279. Total energy = 12540.6843 kcal/mol (12536.3151 without restraints) Performing minimization step: 1280. Total energy = 12534.3878 kcal/mol (12530.0200 without restraints) Performing minimization step: 1281. Total energy = 12528.0980 kcal/mol (12523.7314 without restraints) Performing minimization step: 1282. Total energy = 12521.8154 kcal/mol (12517.4505 without restraints) Performing minimization step: 1283. Total energy = 12515.5405 kcal/mol (12511.1769 without restraints) Performing minimization step: 1284. Total energy = 12509.2721 kcal/mol (12504.9099 without restraints) Performing minimization step: 1285. Total energy = 12503.0113 kcal/mol (12498.6506 without restraints) Performing minimization step: 1286. Total energy = 12496.7573 kcal/mol (12492.3979 without restraints) Performing minimization step: 1287. Total energy = 12490.5096 kcal/mol (12486.1516 without restraints) Performing minimization step: 1288. Total energy = 12484.2695 kcal/mol (12479.9129 without restraints) Performing minimization step: 1289. Total energy = 12478.0363 kcal/mol (12473.6811 without restraints) Performing minimization step: 1290. Total energy = 12471.8100 kcal/mol (12467.4562 without restraints) Performing minimization step: 1291. Total energy = 12465.5905 kcal/mol (12461.2378 without restraints) Performing minimization step: 1292. Total energy = 12459.3779 kcal/mol (12455.0268 without restraints) Performing minimization step: 1293. Total energy = 12453.1726 kcal/mol (12448.8230 without restraints) Performing minimization step: 1294. Total energy = 12446.9745 kcal/mol (12442.6261 without restraints) Performing minimization step: 1295. Total energy = 12440.7829 kcal/mol (12436.4359 without restraints) Performing minimization step: 1296. Total energy = 12434.5981 kcal/mol (12430.2525 without restraints) Performing minimization step: 1297. Total energy = 12428.4203 kcal/mol (12424.0762 without restraints) Performing minimization step: 1298. Total energy = 12422.2496 kcal/mol (12417.9068 without restraints) Performing minimization step: 1299. Total energy = 12416.0858 kcal/mol (12411.7446 without restraints) Performing minimization step: 1300. Total energy = 12409.9291 kcal/mol (12405.5892 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 12403.7791 kcal/mol (12399.4404 without restraints) Performing minimization step: 1302. Total energy = 12397.6360 kcal/mol (12393.2987 without restraints) Performing minimization step: 1303. Total energy = 12391.4998 kcal/mol (12387.1640 without restraints) Performing minimization step: 1304. Total energy = 12385.3701 kcal/mol (12381.0354 without restraints) Performing minimization step: 1305. Total energy = 12379.2470 kcal/mol (12374.9139 without restraints) Performing minimization step: 1306. Total energy = 12373.1311 kcal/mol (12368.7994 without restraints) Performing minimization step: 1307. Total energy = 12367.0220 kcal/mol (12362.6916 without restraints) Performing minimization step: 1308. Total energy = 12360.9193 kcal/mol (12356.5903 without restraints) Performing minimization step: 1309. Total energy = 12354.8237 kcal/mol (12350.4961 without restraints) Performing minimization step: 1310. Total energy = 12348.7349 kcal/mol (12344.4087 without restraints) Performing minimization step: 1311. Total energy = 12342.6531 kcal/mol (12338.3282 without restraints) Performing minimization step: 1312. Total energy = 12336.5781 kcal/mol (12332.2545 without restraints) Performing minimization step: 1313. Total energy = 12330.5095 kcal/mol (12326.1872 without restraints) Performing minimization step: 1314. Total energy = 12324.4476 kcal/mol (12320.1268 without restraints) Performing minimization step: 1315. Total energy = 12318.3926 kcal/mol (12314.0731 without restraints) Performing minimization step: 1316. Total energy = 12312.3442 kcal/mol (12308.0261 without restraints) Performing minimization step: 1317. Total energy = 12306.3026 kcal/mol (12301.9859 without restraints) Performing minimization step: 1318. Total energy = 12300.2675 kcal/mol (12295.9522 without restraints) Performing minimization step: 1319. Total energy = 12294.2388 kcal/mol (12289.9248 without restraints) Performing minimization step: 1320. Total energy = 12288.2171 kcal/mol (12283.9044 without restraints) Performing minimization step: 1321. Total energy = 12282.2026 kcal/mol (12277.8913 without restraints) Performing minimization step: 1322. Total energy = 12276.1944 kcal/mol (12271.8847 without restraints) Performing minimization step: 1323. Total energy = 12270.1936 kcal/mol (12265.8854 without restraints) Performing minimization step: 1324. Total energy = 12264.1990 kcal/mol (12259.8918 without restraints) Performing minimization step: 1325. Total energy = 12258.2108 kcal/mol (12253.9050 without restraints) Performing minimization step: 1326. Total energy = 12252.2288 kcal/mol (12247.9243 without restraints) Performing minimization step: 1327. Total energy = 12246.2538 kcal/mol (12241.9508 without restraints) Performing minimization step: 1328. Total energy = 12240.2854 kcal/mol (12235.9836 without restraints) Performing minimization step: 1329. Total energy = 12234.3233 kcal/mol (12230.0229 without restraints) Performing minimization step: 1330. Total energy = 12228.3677 kcal/mol (12224.0687 without restraints) Performing minimization step: 1331. Total energy = 12222.4187 kcal/mol (12218.1210 without restraints) Performing minimization step: 1332. Total energy = 12216.4762 kcal/mol (12212.1799 without restraints) Performing minimization step: 1333. Total energy = 12210.5405 kcal/mol (12206.2455 without restraints) Performing minimization step: 1334. Total energy = 12204.6124 kcal/mol (12200.3187 without restraints) Performing minimization step: 1335. Total energy = 12198.6894 kcal/mol (12194.3971 without restraints) Performing minimization step: 1336. Total energy = 12192.7729 kcal/mol (12188.4819 without restraints) Performing minimization step: 1337. Total energy = 12186.8631 kcal/mol (12182.5735 without restraints) Performing minimization step: 1338. Total energy = 12180.9598 kcal/mol (12176.6715 without restraints) Performing minimization step: 1339. Total energy = 12175.0630 kcal/mol (12170.7761 without restraints) Performing minimization step: 1340. Total energy = 12169.1726 kcal/mol (12164.8871 without restraints) Performing minimization step: 1341. Total energy = 12163.2890 kcal/mol (12159.0048 without restraints) Performing minimization step: 1342. Total energy = 12157.4117 kcal/mol (12153.1289 without restraints) Performing minimization step: 1343. Total energy = 12151.5409 kcal/mol (12147.2593 without restraints) Performing minimization step: 1344. Total energy = 12145.6768 kcal/mol (12141.3966 without restraints) Performing minimization step: 1345. Total energy = 12139.8187 kcal/mol (12135.5398 without restraints) Performing minimization step: 1346. Total energy = 12133.9670 kcal/mol (12129.6894 without restraints) Performing minimization step: 1347. Total energy = 12128.1218 kcal/mol (12123.8455 without restraints) Performing minimization step: 1348. Total energy = 12122.2829 kcal/mol (12118.0081 without restraints) Performing minimization step: 1349. Total energy = 12116.4504 kcal/mol (12112.1769 without restraints) Performing minimization step: 1350. Total energy = 12110.6241 kcal/mol (12106.3519 without restraints) Performing minimization step: 1351. Total energy = 12104.8051 kcal/mol (12100.5342 without restraints) Performing minimization step: 1352. Total energy = 12098.9916 kcal/mol (12094.7218 without restraints) Performing minimization step: 1353. Total energy = 12093.1841 kcal/mol (12088.9159 without restraints) Performing minimization step: 1354. Total energy = 12087.3833 kcal/mol (12083.1164 without restraints) Performing minimization step: 1355. Total energy = 12081.5888 kcal/mol (12077.3233 without restraints) Performing minimization step: 1356. Total energy = 12075.8007 kcal/mol (12071.5365 without restraints) Performing minimization step: 1357. Total energy = 12070.0190 kcal/mol (12065.7561 without restraints) Performing minimization step: 1358. Total energy = 12064.2439 kcal/mol (12059.9823 without restraints) Performing minimization step: 1359. Total energy = 12058.4749 kcal/mol (12054.2147 without restraints) Performing minimization step: 1360. Total energy = 12052.7120 kcal/mol (12048.4531 without restraints) Performing minimization step: 1361. Total energy = 12046.9553 kcal/mol (12042.6977 without restraints) Performing minimization step: 1362. Total energy = 12041.2051 kcal/mol (12036.9488 without restraints) Performing minimization step: 1363. Total energy = 12035.4610 kcal/mol (12031.2062 without restraints) Performing minimization step: 1364. Total energy = 12029.7234 kcal/mol (12025.4698 without restraints) Performing minimization step: 1365. Total energy = 12023.9916 kcal/mol (12019.7393 without restraints) Performing minimization step: 1366. Total energy = 12018.2659 kcal/mol (12014.0150 without restraints) Performing minimization step: 1367. Total energy = 12012.5466 kcal/mol (12008.2969 without restraints) Performing minimization step: 1368. Total energy = 12006.8334 kcal/mol (12002.5852 without restraints) Performing minimization step: 1369. Total energy = 12001.1267 kcal/mol (11996.8797 without restraints) Performing minimization step: 1370. Total energy = 11995.4263 kcal/mol (11991.1806 without restraints) Performing minimization step: 1371. Total energy = 11989.7319 kcal/mol (11985.4877 without restraints) Performing minimization step: 1372. Total energy = 11984.0441 kcal/mol (11979.8011 without restraints) Performing minimization step: 1373. Total energy = 11978.3621 kcal/mol (11974.1204 without restraints) Performing minimization step: 1374. Total energy = 11972.6865 kcal/mol (11968.4462 without restraints) Performing minimization step: 1375. Total energy = 11967.0167 kcal/mol (11962.7776 without restraints) Performing minimization step: 1376. Total energy = 11961.3528 kcal/mol (11957.1152 without restraints) Performing minimization step: 1377. Total energy = 11955.6954 kcal/mol (11951.4591 without restraints) Performing minimization step: 1378. Total energy = 11950.0440 kcal/mol (11945.8089 without restraints) Performing minimization step: 1379. Total energy = 11944.3984 kcal/mol (11940.1646 without restraints) Performing minimization step: 1380. Total energy = 11938.7591 kcal/mol (11934.5268 without restraints) Performing minimization step: 1381. Total energy = 11933.1261 kcal/mol (11928.8949 without restraints) Performing minimization step: 1382. Total energy = 11927.4989 kcal/mol (11923.2691 without restraints) Performing minimization step: 1383. Total energy = 11921.8777 kcal/mol (11917.6491 without restraints) Performing minimization step: 1384. Total energy = 11916.2626 kcal/mol (11912.0354 without restraints) Performing minimization step: 1385. Total energy = 11910.6543 kcal/mol (11906.4284 without restraints) Performing minimization step: 1386. Total energy = 11905.0521 kcal/mol (11900.8275 without restraints) Performing minimization step: 1387. Total energy = 11899.4555 kcal/mol (11895.2322 without restraints) Performing minimization step: 1388. Total energy = 11893.8647 kcal/mol (11889.6427 without restraints) Performing minimization step: 1389. Total energy = 11888.2801 kcal/mol (11884.0594 without restraints) Performing minimization step: 1390. Total energy = 11882.7009 kcal/mol (11878.4815 without restraints) Performing minimization step: 1391. Total energy = 11877.1279 kcal/mol (11872.9098 without restraints) Performing minimization step: 1392. Total energy = 11871.5611 kcal/mol (11867.3443 without restraints) Performing minimization step: 1393. Total energy = 11865.9995 kcal/mol (11861.7840 without restraints) Performing minimization step: 1394. Total energy = 11860.4447 kcal/mol (11856.2305 without restraints) Performing minimization step: 1395. Total energy = 11854.8959 kcal/mol (11850.6829 without restraints) Performing minimization step: 1396. Total energy = 11849.3526 kcal/mol (11845.1411 without restraints) Performing minimization step: 1397. Total energy = 11843.8160 kcal/mol (11839.6058 without restraints) Performing minimization step: 1398. Total energy = 11838.2852 kcal/mol (11834.0762 without restraints) Performing minimization step: 1399. Total energy = 11832.7600 kcal/mol (11828.5524 without restraints) Performing minimization step: 1400. Total energy = 11827.2406 kcal/mol (11823.0342 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 11821.7271 kcal/mol (11817.5221 without restraints) Performing minimization step: 1402. Total energy = 11816.2194 kcal/mol (11812.0156 without restraints) Performing minimization step: 1403. Total energy = 11810.7178 kcal/mol (11806.5153 without restraints) Performing minimization step: 1404. Total energy = 11805.2222 kcal/mol (11801.0208 without restraints) Performing minimization step: 1405. Total energy = 11799.7323 kcal/mol (11795.5324 without restraints) Performing minimization step: 1406. Total energy = 11794.2484 kcal/mol (11790.0498 without restraints) Performing minimization step: 1407. Total energy = 11788.7703 kcal/mol (11784.5729 without restraints) Performing minimization step: 1408. Total energy = 11783.2978 kcal/mol (11779.1018 without restraints) Performing minimization step: 1409. Total energy = 11777.8318 kcal/mol (11773.6372 without restraints) Performing minimization step: 1410. Total energy = 11772.3716 kcal/mol (11768.1782 without restraints) Performing minimization step: 1411. Total energy = 11766.9173 kcal/mol (11762.7252 without restraints) Performing minimization step: 1412. Total energy = 11761.4688 kcal/mol (11757.2780 without restraints) Performing minimization step: 1413. Total energy = 11756.0262 kcal/mol (11751.8366 without restraints) Performing minimization step: 1414. Total energy = 11750.5885 kcal/mol (11746.4002 without restraints) Performing minimization step: 1415. Total energy = 11745.1573 kcal/mol (11740.9703 without restraints) Performing minimization step: 1416. Total energy = 11739.7319 kcal/mol (11735.5462 without restraints) Performing minimization step: 1417. Total energy = 11734.3117 kcal/mol (11730.1273 without restraints) Performing minimization step: 1418. Total energy = 11728.8980 kcal/mol (11724.7147 without restraints) Performing minimization step: 1419. Total energy = 11723.4894 kcal/mol (11719.3076 without restraints) Performing minimization step: 1420. Total energy = 11718.0870 kcal/mol (11713.9066 without restraints) Performing minimization step: 1421. Total energy = 11712.6906 kcal/mol (11708.5113 without restraints) Performing minimization step: 1422. Total energy = 11707.2995 kcal/mol (11703.1216 without restraints) Performing minimization step: 1423. Total energy = 11701.9146 kcal/mol (11697.7379 without restraints) Performing minimization step: 1424. Total energy = 11696.5350 kcal/mol (11692.3596 without restraints) Performing minimization step: 1425. Total energy = 11691.1611 kcal/mol (11686.9869 without restraints) Performing minimization step: 1426. Total energy = 11685.7926 kcal/mol (11681.6198 without restraints) Performing minimization step: 1427. Total energy = 11680.4297 kcal/mol (11676.2580 without restraints) Performing minimization step: 1428. Total energy = 11675.0726 kcal/mol (11670.9023 without restraints) Performing minimization step: 1429. Total energy = 11669.7215 kcal/mol (11665.5526 without restraints) Performing minimization step: 1430. Total energy = 11664.3758 kcal/mol (11660.2083 without restraints) Performing minimization step: 1431. Total energy = 11659.0361 kcal/mol (11654.8696 without restraints) Performing minimization step: 1432. Total energy = 11653.7025 kcal/mol (11649.5374 without restraints) Performing minimization step: 1433. Total energy = 11648.3744 kcal/mol (11644.2106 without restraints) Performing minimization step: 1434. Total energy = 11643.0516 kcal/mol (11638.8890 without restraints) Performing minimization step: 1435. Total energy = 11637.7342 kcal/mol (11633.5729 without restraints) Performing minimization step: 1436. Total energy = 11632.4226 kcal/mol (11628.2626 without restraints) Performing minimization step: 1437. Total energy = 11627.1167 kcal/mol (11622.9581 without restraints) Performing minimization step: 1438. Total energy = 11621.8165 kcal/mol (11617.6590 without restraints) Performing minimization step: 1439. Total energy = 11616.5215 kcal/mol (11612.3653 without restraints) Performing minimization step: 1440. Total energy = 11611.2317 kcal/mol (11607.0767 without restraints) Performing minimization step: 1441. Total energy = 11605.9484 kcal/mol (11601.7948 without restraints) Performing minimization step: 1442. Total energy = 11600.6704 kcal/mol (11596.5180 without restraints) Performing minimization step: 1443. Total energy = 11595.3976 kcal/mol (11591.2464 without restraints) Performing minimization step: 1444. Total energy = 11590.1306 kcal/mol (11585.9808 without restraints) Performing minimization step: 1445. Total energy = 11584.8688 kcal/mol (11580.7203 without restraints) Performing minimization step: 1446. Total energy = 11579.6130 kcal/mol (11575.4657 without restraints) Performing minimization step: 1447. Total energy = 11574.3627 kcal/mol (11570.2168 without restraints) Performing minimization step: 1448. Total energy = 11569.1181 kcal/mol (11564.9734 without restraints) Performing minimization step: 1449. Total energy = 11563.8789 kcal/mol (11559.7355 without restraints) Performing minimization step: 1450. Total energy = 11558.6450 kcal/mol (11554.5028 without restraints) Performing minimization step: 1451. Total energy = 11553.4168 kcal/mol (11549.2759 without restraints) Performing minimization step: 1452. Total energy = 11548.1942 kcal/mol (11544.0545 without restraints) Performing minimization step: 1453. Total energy = 11542.9770 kcal/mol (11538.8387 without restraints) Performing minimization step: 1454. Total energy = 11537.7654 kcal/mol (11533.6282 without restraints) Performing minimization step: 1455. Total energy = 11532.5588 kcal/mol (11528.4229 without restraints) Performing minimization step: 1456. Total energy = 11527.3579 kcal/mol (11523.2232 without restraints) Performing minimization step: 1457. Total energy = 11522.1622 kcal/mol (11518.0290 without restraints) Performing minimization step: 1458. Total energy = 11516.9725 kcal/mol (11512.8406 without restraints) Performing minimization step: 1459. Total energy = 11511.7883 kcal/mol (11507.6576 without restraints) Performing minimization step: 1460. Total energy = 11506.6095 kcal/mol (11502.4800 without restraints) Performing minimization step: 1461. Total energy = 11501.4360 kcal/mol (11497.3078 without restraints) Performing minimization step: 1462. Total energy = 11496.2680 kcal/mol (11492.1408 without restraints) Performing minimization step: 1463. Total energy = 11491.1048 kcal/mol (11486.9791 without restraints) Performing minimization step: 1464. Total energy = 11485.9473 kcal/mol (11481.8229 without restraints) Performing minimization step: 1465. Total energy = 11480.7954 kcal/mol (11476.6722 without restraints) Performing minimization step: 1466. Total energy = 11475.6488 kcal/mol (11471.5268 without restraints) Performing minimization step: 1467. Total energy = 11470.5077 kcal/mol (11466.3869 without restraints) Performing minimization step: 1468. Total energy = 11465.3717 kcal/mol (11461.2522 without restraints) Performing minimization step: 1469. Total energy = 11460.2414 kcal/mol (11456.1233 without restraints) Performing minimization step: 1470. Total energy = 11455.1162 kcal/mol (11450.9992 without restraints) Performing minimization step: 1471. Total energy = 11449.9960 kcal/mol (11445.8801 without restraints) Performing minimization step: 1472. Total energy = 11444.8814 kcal/mol (11440.7670 without restraints) Performing minimization step: 1473. Total energy = 11439.7727 kcal/mol (11435.6596 without restraints) Performing minimization step: 1474. Total energy = 11434.6690 kcal/mol (11430.5571 without restraints) Performing minimization step: 1475. Total energy = 11429.5704 kcal/mol (11425.4597 without restraints) Performing minimization step: 1476. Total energy = 11424.4777 kcal/mol (11420.3682 without restraints) Performing minimization step: 1477. Total energy = 11419.3897 kcal/mol (11415.2815 without restraints) Performing minimization step: 1478. Total energy = 11414.3074 kcal/mol (11410.2005 without restraints) Performing minimization step: 1479. Total energy = 11409.2298 kcal/mol (11405.1242 without restraints) Performing minimization step: 1480. Total energy = 11404.1576 kcal/mol (11400.0532 without restraints) Performing minimization step: 1481. Total energy = 11399.0912 kcal/mol (11394.9880 without restraints) Performing minimization step: 1482. Total energy = 11394.0301 kcal/mol (11389.9282 without restraints) Performing minimization step: 1483. Total energy = 11388.9743 kcal/mol (11384.8737 without restraints) Performing minimization step: 1484. Total energy = 11383.9238 kcal/mol (11379.8244 without restraints) Performing minimization step: 1485. Total energy = 11378.8781 kcal/mol (11374.7800 without restraints) Performing minimization step: 1486. Total energy = 11373.8377 kcal/mol (11369.7409 without restraints) Performing minimization step: 1487. Total energy = 11368.8029 kcal/mol (11364.7072 without restraints) Performing minimization step: 1488. Total energy = 11363.7729 kcal/mol (11359.6785 without restraints) Performing minimization step: 1489. Total energy = 11358.7482 kcal/mol (11354.6550 without restraints) Performing minimization step: 1490. Total energy = 11353.7287 kcal/mol (11349.6369 without restraints) Performing minimization step: 1491. Total energy = 11348.7143 kcal/mol (11344.6236 without restraints) Performing minimization step: 1492. Total energy = 11343.7055 kcal/mol (11339.6160 without restraints) Performing minimization step: 1493. Total energy = 11338.7015 kcal/mol (11334.6134 without restraints) Performing minimization step: 1494. Total energy = 11333.7029 kcal/mol (11329.6160 without restraints) Performing minimization step: 1495. Total energy = 11328.7094 kcal/mol (11324.6237 without restraints) Performing minimization step: 1496. Total energy = 11323.7214 kcal/mol (11319.6371 without restraints) Performing minimization step: 1497. Total energy = 11318.7389 kcal/mol (11314.6557 without restraints) Performing minimization step: 1498. Total energy = 11313.7610 kcal/mol (11309.6789 without restraints) Performing minimization step: 1499. Total energy = 11308.7877 kcal/mol (11304.7070 without restraints) Performing minimization step: 1500. Total energy = 11303.8203 kcal/mol (11299.7411 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 11298.8580 kcal/mol (11294.7797 without restraints) Performing minimization step: 1502. Total energy = 11293.9004 kcal/mol (11289.8235 without restraints) Performing minimization step: 1503. Total energy = 11288.9480 kcal/mol (11284.8723 without restraints) Performing minimization step: 1504. Total energy = 11284.0009 kcal/mol (11279.9264 without restraints) Performing minimization step: 1505. Total energy = 11279.0589 kcal/mol (11274.9857 without restraints) Performing minimization step: 1506. Total energy = 11274.1216 kcal/mol (11270.0496 without restraints) Performing minimization step: 1507. Total energy = 11269.1900 kcal/mol (11265.1192 without restraints) Performing minimization step: 1508. Total energy = 11264.2632 kcal/mol (11260.1938 without restraints) Performing minimization step: 1509. Total energy = 11259.3416 kcal/mol (11255.2732 without restraints) Performing minimization step: 1510. Total energy = 11254.4249 kcal/mol (11250.3578 without restraints) Performing minimization step: 1511. Total energy = 11249.5131 kcal/mol (11245.4473 without restraints) Performing minimization step: 1512. Total energy = 11244.6066 kcal/mol (11240.5420 without restraints) Performing minimization step: 1513. Total energy = 11239.7053 kcal/mol (11235.6419 without restraints) Performing minimization step: 1514. Total energy = 11234.8086 kcal/mol (11230.7465 without restraints) Performing minimization step: 1515. Total energy = 11229.9169 kcal/mol (11225.8560 without restraints) Performing minimization step: 1516. Total energy = 11225.0300 kcal/mol (11220.9703 without restraints) Performing minimization step: 1517. Total energy = 11220.1483 kcal/mol (11216.0897 without restraints) Performing minimization step: 1518. Total energy = 11215.2719 kcal/mol (11211.2147 without restraints) Performing minimization step: 1519. Total energy = 11210.4003 kcal/mol (11206.3443 without restraints) Performing minimization step: 1520. Total energy = 11205.5333 kcal/mol (11201.4786 without restraints) Performing minimization step: 1521. Total energy = 11200.6718 kcal/mol (11196.6183 without restraints) Performing minimization step: 1522. Total energy = 11195.8153 kcal/mol (11191.7631 without restraints) Performing minimization step: 1523. Total energy = 11190.9637 kcal/mol (11186.9127 without restraints) Performing minimization step: 1524. Total energy = 11186.1169 kcal/mol (11182.0671 without restraints) Performing minimization step: 1525. Total energy = 11181.2751 kcal/mol (11177.2265 without restraints) Performing minimization step: 1526. Total energy = 11176.4383 kcal/mol (11172.3909 without restraints) Performing minimization step: 1527. Total energy = 11171.6065 kcal/mol (11167.5605 without restraints) Performing minimization step: 1528. Total energy = 11166.7797 kcal/mol (11162.7348 without restraints) Performing minimization step: 1529. Total energy = 11161.9582 kcal/mol (11157.9145 without restraints) Performing minimization step: 1530. Total energy = 11157.1413 kcal/mol (11153.0989 without restraints) Performing minimization step: 1531. Total energy = 11152.3295 kcal/mol (11148.2884 without restraints) Performing minimization step: 1532. Total energy = 11147.5233 kcal/mol (11143.4833 without restraints) Performing minimization step: 1533. Total energy = 11142.7212 kcal/mol (11138.6824 without restraints) Performing minimization step: 1534. Total energy = 11137.9242 kcal/mol (11133.8867 without restraints) Performing minimization step: 1535. Total energy = 11133.1317 kcal/mol (11129.0954 without restraints) Performing minimization step: 1536. Total energy = 11128.3449 kcal/mol (11124.3098 without restraints) Performing minimization step: 1537. Total energy = 11123.5621 kcal/mol (11119.5283 without restraints) Performing minimization step: 1538. Total energy = 11118.7847 kcal/mol (11114.7521 without restraints) Performing minimization step: 1539. Total energy = 11114.0117 kcal/mol (11109.9802 without restraints) Performing minimization step: 1540. Total energy = 11109.2435 kcal/mol (11105.2133 without restraints) Performing minimization step: 1541. Total energy = 11104.4802 kcal/mol (11100.4513 without restraints) Performing minimization step: 1542. Total energy = 11099.7216 kcal/mol (11095.6939 without restraints) Performing minimization step: 1543. Total energy = 11094.9678 kcal/mol (11090.9412 without restraints) Performing minimization step: 1544. Total energy = 11090.2190 kcal/mol (11086.1937 without restraints) Performing minimization step: 1545. Total energy = 11085.4754 kcal/mol (11081.4513 without restraints) Performing minimization step: 1546. Total energy = 11080.7365 kcal/mol (11076.7135 without restraints) Performing minimization step: 1547. Total energy = 11076.0019 kcal/mol (11071.9803 without restraints) Performing minimization step: 1548. Total energy = 11071.2723 kcal/mol (11067.2520 without restraints) Performing minimization step: 1549. Total energy = 11066.5477 kcal/mol (11062.5284 without restraints) Performing minimization step: 1550. Total energy = 11061.8273 kcal/mol (11057.8092 without restraints) Performing minimization step: 1551. Total energy = 11057.1121 kcal/mol (11053.0953 without restraints) Performing minimization step: 1552. Total energy = 11052.4017 kcal/mol (11048.3861 without restraints) Performing minimization step: 1553. Total energy = 11047.6958 kcal/mol (11043.6815 without restraints) Performing minimization step: 1554. Total energy = 11042.9950 kcal/mol (11038.9819 without restraints) Performing minimization step: 1555. Total energy = 11038.2988 kcal/mol (11034.2869 without restraints) Performing minimization step: 1556. Total energy = 11033.6075 kcal/mol (11029.5968 without restraints) Performing minimization step: 1557. Total energy = 11028.9202 kcal/mol (11024.9106 without restraints) Performing minimization step: 1558. Total energy = 11024.2380 kcal/mol (11020.2297 without restraints) Performing minimization step: 1559. Total energy = 11019.5606 kcal/mol (11015.5535 without restraints) Performing minimization step: 1560. Total energy = 11014.8883 kcal/mol (11010.8825 without restraints) Performing minimization step: 1561. Total energy = 11010.2203 kcal/mol (11006.2156 without restraints) Performing minimization step: 1562. Total energy = 11005.5573 kcal/mol (11001.5540 without restraints) Performing minimization step: 1563. Total energy = 11000.8988 kcal/mol (10996.8966 without restraints) Performing minimization step: 1564. Total energy = 10996.2452 kcal/mol (10992.2443 without restraints) Performing minimization step: 1565. Total energy = 10991.5961 kcal/mol (10987.5963 without restraints) Performing minimization step: 1566. Total energy = 10986.9517 kcal/mol (10982.9531 without restraints) Performing minimization step: 1567. Total energy = 10982.3120 kcal/mol (10978.3146 without restraints) Performing minimization step: 1568. Total energy = 10977.6764 kcal/mol (10973.6801 without restraints) Performing minimization step: 1569. Total energy = 10973.0458 kcal/mol (10969.0509 without restraints) Performing minimization step: 1570. Total energy = 10968.4195 kcal/mol (10964.4258 without restraints) Performing minimization step: 1571. Total energy = 10963.7987 kcal/mol (10959.8061 without restraints) Performing minimization step: 1572. Total energy = 10959.1824 kcal/mol (10955.1912 without restraints) Performing minimization step: 1573. Total energy = 10954.5705 kcal/mol (10950.5803 without restraints) Performing minimization step: 1574. Total energy = 10949.9630 kcal/mol (10945.9741 without restraints) Performing minimization step: 1575. Total energy = 10945.3602 kcal/mol (10941.3725 without restraints) Performing minimization step: 1576. Total energy = 10940.7620 kcal/mol (10936.7755 without restraints) Performing minimization step: 1577. Total energy = 10936.1685 kcal/mol (10932.1832 without restraints) Performing minimization step: 1578. Total energy = 10931.5798 kcal/mol (10927.5956 without restraints) Performing minimization step: 1579. Total energy = 10926.9950 kcal/mol (10923.0121 without restraints) Performing minimization step: 1580. Total energy = 10922.4152 kcal/mol (10918.4336 without restraints) Performing minimization step: 1581. Total energy = 10917.8402 kcal/mol (10913.8597 without restraints) Performing minimization step: 1582. Total energy = 10913.2696 kcal/mol (10909.2904 without restraints) Performing minimization step: 1583. Total energy = 10908.7035 kcal/mol (10904.7255 without restraints) Performing minimization step: 1584. Total energy = 10904.1417 kcal/mol (10900.1648 without restraints) Performing minimization step: 1585. Total energy = 10899.5845 kcal/mol (10895.6089 without restraints) Performing minimization step: 1586. Total energy = 10895.0322 kcal/mol (10891.0576 without restraints) Performing minimization step: 1587. Total energy = 10890.4838 kcal/mol (10886.5106 without restraints) Performing minimization step: 1588. Total energy = 10885.9405 kcal/mol (10881.9683 without restraints) Performing minimization step: 1589. Total energy = 10881.4013 kcal/mol (10877.4304 without restraints) Performing minimization step: 1590. Total energy = 10876.8668 kcal/mol (10872.8971 without restraints) Performing minimization step: 1591. Total energy = 10872.3373 kcal/mol (10868.3688 without restraints) Performing minimization step: 1592. Total energy = 10867.8122 kcal/mol (10863.8451 without restraints) Performing minimization step: 1593. Total energy = 10863.2916 kcal/mol (10859.3256 without restraints) Performing minimization step: 1594. Total energy = 10858.7749 kcal/mol (10854.8100 without restraints) Performing minimization step: 1595. Total energy = 10854.2631 kcal/mol (10850.2994 without restraints) Performing minimization step: 1596. Total energy = 10849.7556 kcal/mol (10845.7931 without restraints) Performing minimization step: 1597. Total energy = 10845.2534 kcal/mol (10841.2921 without restraints) Performing minimization step: 1598. Total energy = 10840.7545 kcal/mol (10836.7945 without restraints) Performing minimization step: 1599. Total energy = 10836.2605 kcal/mol (10832.3016 without restraints) Performing minimization step: 1600. Total energy = 10831.7705 kcal/mol (10827.8127 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 10827.2856 kcal/mol (10823.3291 without restraints) Performing minimization step: 1602. Total energy = 10822.8048 kcal/mol (10818.8496 without restraints) Performing minimization step: 1603. Total energy = 10818.3287 kcal/mol (10814.3745 without restraints) Performing minimization step: 1604. Total energy = 10813.8566 kcal/mol (10809.9036 without restraints) Performing minimization step: 1605. Total energy = 10809.3888 kcal/mol (10805.4370 without restraints) Performing minimization step: 1606. Total energy = 10804.9255 kcal/mol (10800.9749 without restraints) Performing minimization step: 1607. Total energy = 10800.4668 kcal/mol (10796.5174 without restraints) Performing minimization step: 1608. Total energy = 10796.0122 kcal/mol (10792.0640 without restraints) Performing minimization step: 1609. Total energy = 10791.5624 kcal/mol (10787.6155 without restraints) Performing minimization step: 1610. Total energy = 10787.1169 kcal/mol (10783.1710 without restraints) Performing minimization step: 1611. Total energy = 10782.6755 kcal/mol (10778.7309 without restraints) Performing minimization step: 1612. Total energy = 10778.2388 kcal/mol (10774.2953 without restraints) Performing minimization step: 1613. Total energy = 10773.8063 kcal/mol (10769.8640 without restraints) Performing minimization step: 1614. Total energy = 10769.3783 kcal/mol (10765.4373 without restraints) Performing minimization step: 1615. Total energy = 10764.9544 kcal/mol (10761.0145 without restraints) Performing minimization step: 1616. Total energy = 10760.5351 kcal/mol (10756.5964 without restraints) Performing minimization step: 1617. Total energy = 10756.1200 kcal/mol (10752.1824 without restraints) Performing minimization step: 1618. Total energy = 10751.7087 kcal/mol (10747.7724 without restraints) Performing minimization step: 1619. Total energy = 10747.3022 kcal/mol (10743.3671 without restraints) Performing minimization step: 1620. Total energy = 10742.9002 kcal/mol (10738.9663 without restraints) Performing minimization step: 1621. Total energy = 10738.5024 kcal/mol (10734.5696 without restraints) Performing minimization step: 1622. Total energy = 10734.1088 kcal/mol (10730.1772 without restraints) Performing minimization step: 1623. Total energy = 10729.7200 kcal/mol (10725.7896 without restraints) Performing minimization step: 1624. Total energy = 10725.3350 kcal/mol (10721.4059 without restraints) Performing minimization step: 1625. Total energy = 10720.9543 kcal/mol (10717.0263 without restraints) Performing minimization step: 1626. Total energy = 10716.5781 kcal/mol (10712.6512 without restraints) Performing minimization step: 1627. Total energy = 10712.2059 kcal/mol (10708.2804 without restraints) Performing minimization step: 1628. Total energy = 10707.8381 kcal/mol (10703.9136 without restraints) Performing minimization step: 1629. Total energy = 10703.4745 kcal/mol (10699.5513 without restraints) Performing minimization step: 1630. Total energy = 10699.1153 kcal/mol (10695.1931 without restraints) Performing minimization step: 1631. Total energy = 10694.7603 kcal/mol (10690.8395 without restraints) Performing minimization step: 1632. Total energy = 10690.4095 kcal/mol (10686.4897 without restraints) Performing minimization step: 1633. Total energy = 10686.0628 kcal/mol (10682.1445 without restraints) Performing minimization step: 1634. Total energy = 10681.7206 kcal/mol (10677.8032 without restraints) Performing minimization step: 1635. Total energy = 10677.3825 kcal/mol (10673.4663 without restraints) Performing minimization step: 1636. Total energy = 10673.0486 kcal/mol (10669.1335 without restraints) Performing minimization step: 1637. Total energy = 10668.7189 kcal/mol (10664.8050 without restraints) Performing minimization step: 1638. Total energy = 10664.3927 kcal/mol (10660.4799 without restraints) Performing minimization step: 1639. Total energy = 10660.0713 kcal/mol (10656.1598 without restraints) Performing minimization step: 1640. Total energy = 10655.7540 kcal/mol (10651.8436 without restraints) Performing minimization step: 1641. Total energy = 10651.4408 kcal/mol (10647.5316 without restraints) Performing minimization step: 1642. Total energy = 10647.1318 kcal/mol (10643.2236 without restraints) Performing minimization step: 1643. Total energy = 10642.8267 kcal/mol (10638.9200 without restraints) Performing minimization step: 1644. Total energy = 10638.5260 kcal/mol (10634.6203 without restraints) Performing minimization step: 1645. Total energy = 10634.2294 kcal/mol (10630.3250 without restraints) Performing minimization step: 1646. Total energy = 10629.9371 kcal/mol (10626.0338 without restraints) Performing minimization step: 1647. Total energy = 10625.6488 kcal/mol (10621.7467 without restraints) Performing minimization step: 1648. Total energy = 10621.3648 kcal/mol (10617.4637 without restraints) Performing minimization step: 1649. Total energy = 10617.0844 kcal/mol (10613.1846 without restraints) Performing minimization step: 1650. Total energy = 10612.8086 kcal/mol (10608.9100 without restraints) Performing minimization step: 1651. Total energy = 10608.5369 kcal/mol (10604.6395 without restraints) Performing minimization step: 1652. Total energy = 10604.2693 kcal/mol (10600.3732 without restraints) Performing minimization step: 1653. Total energy = 10600.0059 kcal/mol (10596.1108 without restraints) Performing minimization step: 1654. Total energy = 10595.7465 kcal/mol (10591.8526 without restraints) Performing minimization step: 1655. Total energy = 10591.4913 kcal/mol (10587.5985 without restraints) Performing minimization step: 1656. Total energy = 10587.2402 kcal/mol (10583.3486 without restraints) Performing minimization step: 1657. Total energy = 10582.9931 kcal/mol (10579.1027 without restraints) Performing minimization step: 1658. Total energy = 10578.7500 kcal/mol (10574.8608 without restraints) Performing minimization step: 1659. Total energy = 10574.5112 kcal/mol (10570.6233 without restraints) Performing minimization step: 1660. Total energy = 10570.2761 kcal/mol (10566.3891 without restraints) Performing minimization step: 1661. Total energy = 10566.0452 kcal/mol (10562.1595 without restraints) Performing minimization step: 1662. Total energy = 10561.8184 kcal/mol (10557.9339 without restraints) Performing minimization step: 1663. Total energy = 10557.5959 kcal/mol (10553.7124 without restraints) Performing minimization step: 1664. Total energy = 10553.3770 kcal/mol (10549.4948 without restraints) Performing minimization step: 1665. Total energy = 10549.1621 kcal/mol (10545.2810 without restraints) Performing minimization step: 1666. Total energy = 10544.9517 kcal/mol (10541.0718 without restraints) Performing minimization step: 1667. Total energy = 10540.7456 kcal/mol (10536.8669 without restraints) Performing minimization step: 1668. Total energy = 10536.5429 kcal/mol (10532.6653 without restraints) Performing minimization step: 1669. Total energy = 10532.3440 kcal/mol (10528.4676 without restraints) Performing minimization step: 1670. Total energy = 10528.1490 kcal/mol (10524.2738 without restraints) Performing minimization step: 1671. Total energy = 10523.9583 kcal/mol (10520.0840 without restraints) Performing minimization step: 1672. Total energy = 10519.7711 kcal/mol (10515.8982 without restraints) Performing minimization step: 1673. Total energy = 10515.5879 kcal/mol (10511.7162 without restraints) Performing minimization step: 1674. Total energy = 10511.4091 kcal/mol (10507.5385 without restraints) Performing minimization step: 1675. Total energy = 10507.2344 kcal/mol (10503.3650 without restraints) Performing minimization step: 1676. Total energy = 10503.0634 kcal/mol (10499.1950 without restraints) Performing minimization step: 1677. Total energy = 10498.8965 kcal/mol (10495.0293 without restraints) Performing minimization step: 1678. Total energy = 10494.7335 kcal/mol (10490.8675 without restraints) Performing minimization step: 1679. Total energy = 10490.5744 kcal/mol (10486.7096 without restraints) Performing minimization step: 1680. Total energy = 10486.4196 kcal/mol (10482.5561 without restraints) Performing minimization step: 1681. Total energy = 10482.2685 kcal/mol (10478.4061 without restraints) Performing minimization step: 1682. Total energy = 10478.1214 kcal/mol (10474.2599 without restraints) Performing minimization step: 1683. Total energy = 10473.9777 kcal/mol (10470.1176 without restraints) Performing minimization step: 1684. Total energy = 10469.8384 kcal/mol (10465.9793 without restraints) Performing minimization step: 1685. Total energy = 10465.7031 kcal/mol (10461.8453 without restraints) Performing minimization step: 1686. Total energy = 10461.5717 kcal/mol (10457.7150 without restraints) Performing minimization step: 1687. Total energy = 10457.4439 kcal/mol (10453.5884 without restraints) Performing minimization step: 1688. Total energy = 10453.3205 kcal/mol (10449.4660 without restraints) Performing minimization step: 1689. Total energy = 10449.2004 kcal/mol (10445.3472 without restraints) Performing minimization step: 1690. Total energy = 10445.0850 kcal/mol (10441.2330 without restraints) Performing minimization step: 1691. Total energy = 10440.9727 kcal/mol (10437.1218 without restraints) Performing minimization step: 1692. Total energy = 10436.8643 kcal/mol (10433.0145 without restraints) Performing minimization step: 1693. Total energy = 10432.7599 kcal/mol (10428.9113 without restraints) Performing minimization step: 1694. Total energy = 10428.6596 kcal/mol (10424.8121 without restraints) Performing minimization step: 1695. Total energy = 10424.5627 kcal/mol (10420.7163 without restraints) Performing minimization step: 1696. Total energy = 10420.4694 kcal/mol (10416.6242 without restraints) Performing minimization step: 1697. Total energy = 10416.3801 kcal/mol (10412.5361 without restraints) Performing minimization step: 1698. Total energy = 10412.2947 kcal/mol (10408.4517 without restraints) Performing minimization step: 1699. Total energy = 10408.2128 kcal/mol (10404.3710 without restraints) Performing minimization step: 1700. Total energy = 10404.1349 kcal/mol (10400.2943 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 10400.0613 kcal/mol (10396.2218 without restraints) Performing minimization step: 1702. Total energy = 10395.9915 kcal/mol (10392.1532 without restraints) Performing minimization step: 1703. Total energy = 10391.9250 kcal/mol (10388.0878 without restraints) Performing minimization step: 1704. Total energy = 10387.8623 kcal/mol (10384.0263 without restraints) Performing minimization step: 1705. Total energy = 10383.8035 kcal/mol (10379.9686 without restraints) Performing minimization step: 1706. Total energy = 10379.7483 kcal/mol (10375.9147 without restraints) Performing minimization step: 1707. Total energy = 10375.6971 kcal/mol (10371.8646 without restraints) Performing minimization step: 1708. Total energy = 10371.6499 kcal/mol (10367.8185 without restraints) Performing minimization step: 1709. Total energy = 10367.6061 kcal/mol (10363.7759 without restraints) Performing minimization step: 1710. Total energy = 10363.5660 kcal/mol (10359.7369 without restraints) Performing minimization step: 1711. Total energy = 10359.5299 kcal/mol (10355.7020 without restraints) Performing minimization step: 1712. Total energy = 10355.4979 kcal/mol (10351.6712 without restraints) Performing minimization step: 1713. Total energy = 10351.4691 kcal/mol (10347.6436 without restraints) Performing minimization step: 1714. Total energy = 10347.4441 kcal/mol (10343.6196 without restraints) Performing minimization step: 1715. Total energy = 10343.4221 kcal/mol (10339.5988 without restraints) Performing minimization step: 1716. Total energy = 10339.4046 kcal/mol (10335.5824 without restraints) Performing minimization step: 1717. Total energy = 10335.3911 kcal/mol (10331.5701 without restraints) Performing minimization step: 1718. Total energy = 10331.3808 kcal/mol (10327.5608 without restraints) Performing minimization step: 1719. Total energy = 10327.3742 kcal/mol (10323.5555 without restraints) Performing minimization step: 1720. Total energy = 10323.3711 kcal/mol (10319.5533 without restraints) Performing minimization step: 1721. Total energy = 10319.3715 kcal/mol (10315.5549 without restraints) Performing minimization step: 1722. Total energy = 10315.3759 kcal/mol (10311.5605 without restraints) Performing minimization step: 1723. Total energy = 10311.3847 kcal/mol (10307.5705 without restraints) Performing minimization step: 1724. Total energy = 10307.3965 kcal/mol (10303.5834 without restraints) Performing minimization step: 1725. Total energy = 10303.4124 kcal/mol (10299.6006 without restraints) Performing minimization step: 1726. Total energy = 10299.4313 kcal/mol (10295.6203 without restraints) Performing minimization step: 1727. Total energy = 10295.4538 kcal/mol (10291.6441 without restraints) Performing minimization step: 1728. Total energy = 10291.4802 kcal/mol (10287.6716 without restraints) Performing minimization step: 1729. Total energy = 10287.5102 kcal/mol (10283.7027 without restraints) Performing minimization step: 1730. Total energy = 10283.5438 kcal/mol (10279.7376 without restraints) Performing minimization step: 1731. Total energy = 10279.5810 kcal/mol (10275.7759 without restraints) Performing minimization step: 1732. Total energy = 10275.6218 kcal/mol (10271.8178 without restraints) Performing minimization step: 1733. Total energy = 10271.6661 kcal/mol (10267.8632 without restraints) Performing minimization step: 1734. Total energy = 10267.7139 kcal/mol (10263.9120 without restraints) Performing minimization step: 1735. Total energy = 10263.7651 kcal/mol (10259.9645 without restraints) Performing minimization step: 1736. Total energy = 10259.8202 kcal/mol (10256.0208 without restraints) Performing minimization step: 1737. Total energy = 10255.8791 kcal/mol (10252.0807 without restraints) Performing minimization step: 1738. Total energy = 10251.9414 kcal/mol (10248.1442 without restraints) Performing minimization step: 1739. Total energy = 10248.0071 kcal/mol (10244.2110 without restraints) Performing minimization step: 1740. Total energy = 10244.0769 kcal/mol (10240.2819 without restraints) Performing minimization step: 1741. Total energy = 10240.1498 kcal/mol (10236.3561 without restraints) Performing minimization step: 1742. Total energy = 10236.2263 kcal/mol (10232.4336 without restraints) Performing minimization step: 1743. Total energy = 10232.3063 kcal/mol (10228.5146 without restraints) Performing minimization step: 1744. Total energy = 10228.3899 kcal/mol (10224.5994 without restraints) Performing minimization step: 1745. Total energy = 10224.4770 kcal/mol (10220.6877 without restraints) Performing minimization step: 1746. Total energy = 10220.5681 kcal/mol (10216.7799 without restraints) Performing minimization step: 1747. Total energy = 10216.6623 kcal/mol (10212.8752 without restraints) Performing minimization step: 1748. Total energy = 10212.7600 kcal/mol (10208.9741 without restraints) Performing minimization step: 1749. Total energy = 10208.8613 kcal/mol (10205.0765 without restraints) Performing minimization step: 1750. Total energy = 10204.9665 kcal/mol (10201.1828 without restraints) Performing minimization step: 1751. Total energy = 10201.0747 kcal/mol (10197.2921 without restraints) Performing minimization step: 1752. Total energy = 10197.1867 kcal/mol (10193.4053 without restraints) Performing minimization step: 1753. Total energy = 10193.3023 kcal/mol (10189.5220 without restraints) Performing minimization step: 1754. Total energy = 10189.4210 kcal/mol (10185.6420 without restraints) Performing minimization step: 1755. Total energy = 10185.5429 kcal/mol (10181.7649 without restraints) Performing minimization step: 1756. Total energy = 10181.6685 kcal/mol (10177.8916 without restraints) Performing minimization step: 1757. Total energy = 10177.7976 kcal/mol (10174.0217 without restraints) Performing minimization step: 1758. Total energy = 10173.9302 kcal/mol (10170.1555 without restraints) Performing minimization step: 1759. Total energy = 10170.0660 kcal/mol (10166.2924 without restraints) Performing minimization step: 1760. Total energy = 10166.2053 kcal/mol (10162.4329 without restraints) Performing minimization step: 1761. Total energy = 10162.3477 kcal/mol (10158.5765 without restraints) Performing minimization step: 1762. Total energy = 10158.4943 kcal/mol (10154.7241 without restraints) Performing minimization step: 1763. Total energy = 10154.6444 kcal/mol (10150.8753 without restraints) Performing minimization step: 1764. Total energy = 10150.7972 kcal/mol (10147.0293 without restraints) Performing minimization step: 1765. Total energy = 10146.9533 kcal/mol (10143.1864 without restraints) Performing minimization step: 1766. Total energy = 10143.1127 kcal/mol (10139.3470 without restraints) Performing minimization step: 1767. Total energy = 10139.2758 kcal/mol (10135.5112 without restraints) Performing minimization step: 1768. Total energy = 10135.4426 kcal/mol (10131.6793 without restraints) Performing minimization step: 1769. Total energy = 10131.6130 kcal/mol (10127.8507 without restraints) Performing minimization step: 1770. Total energy = 10127.7867 kcal/mol (10124.0254 without restraints) Performing minimization step: 1771. Total energy = 10123.9635 kcal/mol (10120.2033 without restraints) Performing minimization step: 1772. Total energy = 10120.1436 kcal/mol (10116.3847 without restraints) Performing minimization step: 1773. Total energy = 10116.3271 kcal/mol (10112.5692 without restraints) Performing minimization step: 1774. Total energy = 10112.5139 kcal/mol (10108.7573 without restraints) Performing minimization step: 1775. Total energy = 10108.7045 kcal/mol (10104.9490 without restraints) Performing minimization step: 1776. Total energy = 10104.8985 kcal/mol (10101.1440 without restraints) Performing minimization step: 1777. Total energy = 10101.0957 kcal/mol (10097.3423 without restraints) Performing minimization step: 1778. Total energy = 10097.2958 kcal/mol (10093.5435 without restraints) Performing minimization step: 1779. Total energy = 10093.4997 kcal/mol (10089.7485 without restraints) Performing minimization step: 1780. Total energy = 10089.7067 kcal/mol (10085.9566 without restraints) Performing minimization step: 1781. Total energy = 10085.9170 kcal/mol (10082.1681 without restraints) Performing minimization step: 1782. Total energy = 10082.1309 kcal/mol (10078.3831 without restraints) Performing minimization step: 1783. Total energy = 10078.3483 kcal/mol (10074.6015 without restraints) Performing minimization step: 1784. Total energy = 10074.5683 kcal/mol (10070.8227 without restraints) Performing minimization step: 1785. Total energy = 10070.7918 kcal/mol (10067.0475 without restraints) Performing minimization step: 1786. Total energy = 10067.0185 kcal/mol (10063.2751 without restraints) Performing minimization step: 1787. Total energy = 10063.2486 kcal/mol (10059.5063 without restraints) Performing minimization step: 1788. Total energy = 10059.4817 kcal/mol (10055.7406 without restraints) Performing minimization step: 1789. Total energy = 10055.7191 kcal/mol (10051.9790 without restraints) Performing minimization step: 1790. Total energy = 10051.9588 kcal/mol (10048.2199 without restraints) Performing minimization step: 1791. Total energy = 10048.2024 kcal/mol (10044.4645 without restraints) Performing minimization step: 1792. Total energy = 10044.4486 kcal/mol (10040.7118 without restraints) Performing minimization step: 1793. Total energy = 10040.6982 kcal/mol (10036.9626 without restraints) Performing minimization step: 1794. Total energy = 10036.9511 kcal/mol (10033.2166 without restraints) Performing minimization step: 1795. Total energy = 10033.2072 kcal/mol (10029.4738 without restraints) Performing minimization step: 1796. Total energy = 10029.4670 kcal/mol (10025.7347 without restraints) Performing minimization step: 1797. Total energy = 10025.7302 kcal/mol (10021.9990 without restraints) Performing minimization step: 1798. Total energy = 10021.9961 kcal/mol (10018.2660 without restraints) Performing minimization step: 1799. Total energy = 10018.2651 kcal/mol (10014.5361 without restraints) Performing minimization step: 1800. Total energy = 10014.5374 kcal/mol (10010.8096 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 10010.8131 kcal/mol (10007.0863 without restraints) Performing minimization step: 1802. Total energy = 10007.0917 kcal/mol (10003.3660 without restraints) Performing minimization step: 1803. Total energy = 10003.3735 kcal/mol (9999.6489 without restraints) Performing minimization step: 1804. Total energy = 9999.6582 kcal/mol (9995.9348 without restraints) Performing minimization step: 1805. Total energy = 9995.9462 kcal/mol (9992.2238 without restraints) Performing minimization step: 1806. Total energy = 9992.2377 kcal/mol (9988.5164 without restraints) Performing minimization step: 1807. Total energy = 9988.5320 kcal/mol (9984.8118 without restraints) Performing minimization step: 1808. Total energy = 9984.8297 kcal/mol (9981.1107 without restraints) Performing minimization step: 1809. Total energy = 9981.1308 kcal/mol (9977.4128 without restraints) Performing minimization step: 1810. Total energy = 9977.4346 kcal/mol (9973.7178 without restraints) Performing minimization step: 1811. Total energy = 9973.7417 kcal/mol (9970.0259 without restraints) Performing minimization step: 1812. Total energy = 9970.0521 kcal/mol (9966.3374 without restraints) Performing minimization step: 1813. Total energy = 9966.3657 kcal/mol (9962.6520 without restraints) Performing minimization step: 1814. Total energy = 9962.6819 kcal/mol (9958.9694 without restraints) Performing minimization step: 1815. Total energy = 9959.0017 kcal/mol (9955.2904 without restraints) Performing minimization step: 1816. Total energy = 9955.3244 kcal/mol (9951.6141 without restraints) Performing minimization step: 1817. Total energy = 9951.6502 kcal/mol (9947.9412 without restraints) Performing minimization step: 1818. Total energy = 9947.9789 kcal/mol (9944.2708 without restraints) Performing minimization step: 1819. Total energy = 9944.3109 kcal/mol (9940.6039 without restraints) Performing minimization step: 1820. Total energy = 9940.6469 kcal/mol (9936.9410 without restraints) Performing minimization step: 1821. Total energy = 9936.9851 kcal/mol (9933.2803 without restraints) Performing minimization step: 1822. Total energy = 9933.3261 kcal/mol (9929.6224 without restraints) Performing minimization step: 1823. Total energy = 9929.6707 kcal/mol (9925.9682 without restraints) Performing minimization step: 1824. Total energy = 9926.0181 kcal/mol (9922.3166 without restraints) Performing minimization step: 1825. Total energy = 9922.3683 kcal/mol (9918.6678 without restraints) Performing minimization step: 1826. Total energy = 9918.7217 kcal/mol (9915.0224 without restraints) Performing minimization step: 1827. Total energy = 9915.0783 kcal/mol (9911.3800 without restraints) Performing minimization step: 1828. Total energy = 9911.4378 kcal/mol (9907.7407 without restraints) Performing minimization step: 1829. Total energy = 9907.8002 kcal/mol (9904.1040 without restraints) Performing minimization step: 1830. Total energy = 9904.1658 kcal/mol (9900.4708 without restraints) Performing minimization step: 1831. Total energy = 9900.5344 kcal/mol (9896.8406 without restraints) Performing minimization step: 1832. Total energy = 9896.9063 kcal/mol (9893.2135 without restraints) Performing minimization step: 1833. Total energy = 9893.2809 kcal/mol (9889.5891 without restraints) Performing minimization step: 1834. Total energy = 9889.6585 kcal/mol (9885.9679 without restraints) Performing minimization step: 1835. Total energy = 9886.0393 kcal/mol (9882.3498 without restraints) Performing minimization step: 1836. Total energy = 9882.4229 kcal/mol (9878.7344 without restraints) Performing minimization step: 1837. Total energy = 9878.8095 kcal/mol (9875.1221 without restraints) Performing minimization step: 1838. Total energy = 9875.1989 kcal/mol (9871.5127 without restraints) Performing minimization step: 1839. Total energy = 9871.5915 kcal/mol (9867.9063 without restraints) Performing minimization step: 1840. Total energy = 9867.9873 kcal/mol (9864.3032 without restraints) Performing minimization step: 1841. Total energy = 9864.3856 kcal/mol (9860.7026 without restraints) Performing minimization step: 1842. Total energy = 9860.7871 kcal/mol (9857.1053 without restraints) Performing minimization step: 1843. Total energy = 9857.1917 kcal/mol (9853.5108 without restraints) Performing minimization step: 1844. Total energy = 9853.5987 kcal/mol (9849.9190 without restraints) Performing minimization step: 1845. Total energy = 9850.0088 kcal/mol (9846.3301 without restraints) Performing minimization step: 1846. Total energy = 9846.4220 kcal/mol (9842.7444 without restraints) Performing minimization step: 1847. Total energy = 9842.8383 kcal/mol (9839.1617 without restraints) Performing minimization step: 1848. Total energy = 9839.2578 kcal/mol (9835.5823 without restraints) Performing minimization step: 1849. Total energy = 9835.6794 kcal/mol (9832.0050 without restraints) Performing minimization step: 1850. Total energy = 9832.1038 kcal/mol (9828.4306 without restraints) Performing minimization step: 1851. Total energy = 9828.5319 kcal/mol (9824.8599 without restraints) Performing minimization step: 1852. Total energy = 9824.9627 kcal/mol (9821.2915 without restraints) Performing minimization step: 1853. Total energy = 9821.3959 kcal/mol (9817.7258 without restraints) Performing minimization step: 1854. Total energy = 9817.8319 kcal/mol (9814.1629 without restraints) Performing minimization step: 1855. Total energy = 9814.2714 kcal/mol (9810.6034 without restraints) Performing minimization step: 1856. Total energy = 9810.7139 kcal/mol (9807.0472 without restraints) Performing minimization step: 1857. Total energy = 9807.1592 kcal/mol (9803.4934 without restraints) Performing minimization step: 1858. Total energy = 9803.6073 kcal/mol (9799.9427 without restraints) Performing minimization step: 1859. Total energy = 9800.0587 kcal/mol (9796.3953 without restraints) Performing minimization step: 1860. Total energy = 9796.5139 kcal/mol (9792.8513 without restraints) Performing minimization step: 1861. Total energy = 9792.9705 kcal/mol (9789.3090 without restraints) Performing minimization step: 1862. Total energy = 9789.4297 kcal/mol (9785.7690 without restraints) Performing minimization step: 1863. Total energy = 9785.8920 kcal/mol (9782.2326 without restraints) Performing minimization step: 1864. Total energy = 9782.3571 kcal/mol (9778.6989 without restraints) Performing minimization step: 1865. Total energy = 9778.8251 kcal/mol (9775.1679 without restraints) Performing minimization step: 1866. Total energy = 9775.2967 kcal/mol (9771.6406 without restraints) Performing minimization step: 1867. Total energy = 9771.7699 kcal/mol (9768.1148 without restraints) Performing minimization step: 1868. Total energy = 9768.2459 kcal/mol (9764.5919 without restraints) Performing minimization step: 1869. Total energy = 9764.7249 kcal/mol (9761.0719 without restraints) Performing minimization step: 1870. Total energy = 9761.2065 kcal/mol (9757.5547 without restraints) Performing minimization step: 1871. Total energy = 9757.6907 kcal/mol (9754.0400 without restraints) Performing minimization step: 1872. Total energy = 9754.1783 kcal/mol (9750.5286 without restraints) Performing minimization step: 1873. Total energy = 9750.6688 kcal/mol (9747.0202 without restraints) Performing minimization step: 1874. Total energy = 9747.1622 kcal/mol (9743.5149 without restraints) Performing minimization step: 1875. Total energy = 9743.6585 kcal/mol (9740.0121 without restraints) Performing minimization step: 1876. Total energy = 9740.1570 kcal/mol (9736.5114 without restraints) Performing minimization step: 1877. Total energy = 9736.6584 kcal/mol (9733.0141 without restraints) Performing minimization step: 1878. Total energy = 9733.1626 kcal/mol (9729.5193 without restraints) Performing minimization step: 1879. Total energy = 9729.6699 kcal/mol (9726.0277 without restraints) Performing minimization step: 1880. Total energy = 9726.1795 kcal/mol (9722.5382 without restraints) Performing minimization step: 1881. Total energy = 9722.6920 kcal/mol (9719.0519 without restraints) Performing minimization step: 1882. Total energy = 9719.2071 kcal/mol (9715.5681 without restraints) Performing minimization step: 1883. Total energy = 9715.7248 kcal/mol (9712.0868 without restraints) Performing minimization step: 1884. Total energy = 9712.2456 kcal/mol (9708.6087 without restraints) Performing minimization step: 1885. Total energy = 9708.7687 kcal/mol (9705.1329 without restraints) Performing minimization step: 1886. Total energy = 9705.2947 kcal/mol (9701.6599 without restraints) Performing minimization step: 1887. Total energy = 9701.8232 kcal/mol (9698.1895 without restraints) Performing minimization step: 1888. Total energy = 9698.3546 kcal/mol (9694.7220 without restraints) Performing minimization step: 1889. Total energy = 9694.8887 kcal/mol (9691.2571 without restraints) Performing minimization step: 1890. Total energy = 9691.4253 kcal/mol (9687.7947 without restraints) Performing minimization step: 1891. Total energy = 9687.9649 kcal/mol (9684.3354 without restraints) Performing minimization step: 1892. Total energy = 9684.5076 kcal/mol (9680.8792 without restraints) Performing minimization step: 1893. Total energy = 9681.0526 kcal/mol (9677.4251 without restraints) Performing minimization step: 1894. Total energy = 9677.6002 kcal/mol (9673.9739 without restraints) Performing minimization step: 1895. Total energy = 9674.1500 kcal/mol (9670.5247 without restraints) Performing minimization step: 1896. Total energy = 9670.7034 kcal/mol (9667.0792 without restraints) Performing minimization step: 1897. Total energy = 9667.2592 kcal/mol (9663.6360 without restraints) Performing minimization step: 1898. Total energy = 9663.8172 kcal/mol (9660.1951 without restraints) Performing minimization step: 1899. Total energy = 9660.3779 kcal/mol (9656.7568 without restraints) Performing minimization step: 1900. Total energy = 9656.9411 kcal/mol (9653.3211 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 9653.5073 kcal/mol (9649.8885 without restraints) Performing minimization step: 1902. Total energy = 9650.0764 kcal/mol (9646.4585 without restraints) Performing minimization step: 1903. Total energy = 9646.6477 kcal/mol (9643.0309 without restraints) Performing minimization step: 1904. Total energy = 9643.2211 kcal/mol (9639.6053 without restraints) Performing minimization step: 1905. Total energy = 9639.7977 kcal/mol (9636.1829 without restraints) Performing minimization step: 1906. Total energy = 9636.3767 kcal/mol (9632.7629 without restraints) Performing minimization step: 1907. Total energy = 9632.9584 kcal/mol (9629.3459 without restraints) Performing minimization step: 1908. Total energy = 9629.5433 kcal/mol (9625.9317 without restraints) Performing minimization step: 1909. Total energy = 9626.1300 kcal/mol (9622.5195 without restraints) Performing minimization step: 1910. Total energy = 9622.7193 kcal/mol (9619.1098 without restraints) Performing minimization step: 1911. Total energy = 9619.3112 kcal/mol (9615.7028 without restraints) Performing minimization step: 1912. Total energy = 9615.9057 kcal/mol (9612.2983 without restraints) Performing minimization step: 1913. Total energy = 9612.5029 kcal/mol (9608.8965 without restraints) Performing minimization step: 1914. Total energy = 9609.1027 kcal/mol (9605.4975 without restraints) Performing minimization step: 1915. Total energy = 9605.7050 kcal/mol (9602.1008 without restraints) Performing minimization step: 1916. Total energy = 9602.3101 kcal/mol (9598.7069 without restraints) Performing minimization step: 1917. Total energy = 9598.9177 kcal/mol (9595.3155 without restraints) Performing minimization step: 1918. Total energy = 9595.5273 kcal/mol (9591.9263 without restraints) Performing minimization step: 1919. Total energy = 9592.1395 kcal/mol (9588.5394 without restraints) Performing minimization step: 1920. Total energy = 9588.7543 kcal/mol (9585.1553 without restraints) Performing minimization step: 1921. Total energy = 9585.3711 kcal/mol (9581.7729 without restraints) Performing minimization step: 1922. Total energy = 9581.9912 kcal/mol (9578.3941 without restraints) Performing minimization step: 1923. Total energy = 9578.6135 kcal/mol (9575.0174 without restraints) Performing minimization step: 1924. Total energy = 9575.2382 kcal/mol (9571.6431 without restraints) Performing minimization step: 1925. Total energy = 9571.8653 kcal/mol (9568.2714 without restraints) Performing minimization step: 1926. Total energy = 9568.4949 kcal/mol (9564.9022 without restraints) Performing minimization step: 1927. Total energy = 9565.1272 kcal/mol (9561.5352 without restraints) Performing minimization step: 1928. Total energy = 9561.7612 kcal/mol (9558.1705 without restraints) Performing minimization step: 1929. Total energy = 9558.3982 kcal/mol (9554.8085 without restraints) Performing minimization step: 1930. Total energy = 9555.0379 kcal/mol (9551.4491 without restraints) Performing minimization step: 1931. Total energy = 9551.6795 kcal/mol (9548.0919 without restraints) Performing minimization step: 1932. Total energy = 9548.3242 kcal/mol (9544.7377 without restraints) Performing minimization step: 1933. Total energy = 9544.9713 kcal/mol (9541.3857 without restraints) Performing minimization step: 1934. Total energy = 9541.6205 kcal/mol (9538.0359 without restraints) Performing minimization step: 1935. Total energy = 9538.2723 kcal/mol (9534.6888 without restraints) Performing minimization step: 1936. Total energy = 9534.9265 kcal/mol (9531.3440 without restraints) Performing minimization step: 1937. Total energy = 9531.5831 kcal/mol (9528.0016 without restraints) Performing minimization step: 1938. Total energy = 9528.2422 kcal/mol (9524.6618 without restraints) Performing minimization step: 1939. Total energy = 9524.9036 kcal/mol (9521.3242 without restraints) Performing minimization step: 1940. Total energy = 9521.5673 kcal/mol (9517.9889 without restraints) Performing minimization step: 1941. Total energy = 9518.2332 kcal/mol (9514.6559 without restraints) Performing minimization step: 1942. Total energy = 9514.9022 kcal/mol (9511.3262 without restraints) Performing minimization step: 1943. Total energy = 9511.5733 kcal/mol (9507.9981 without restraints) Performing minimization step: 1944. Total energy = 9508.2470 kcal/mol (9504.6728 without restraints) Performing minimization step: 1945. Total energy = 9504.9231 kcal/mol (9501.3500 without restraints) Performing minimization step: 1946. Total energy = 9501.6016 kcal/mol (9498.0294 without restraints) Performing minimization step: 1947. Total energy = 9498.2824 kcal/mol (9494.7113 without restraints) Performing minimization step: 1948. Total energy = 9494.9661 kcal/mol (9491.3962 without restraints) Performing minimization step: 1949. Total energy = 9491.6521 kcal/mol (9488.0834 without restraints) Performing minimization step: 1950. Total energy = 9488.3408 kcal/mol (9484.7727 without restraints) Performing minimization step: 1951. Total energy = 9485.0310 kcal/mol (9481.4639 without restraints) Performing minimization step: 1952. Total energy = 9481.7231 kcal/mol (9478.1571 without restraints) Performing minimization step: 1953. Total energy = 9478.4180 kcal/mol (9474.8531 without restraints) Performing minimization step: 1954. Total energy = 9475.1152 kcal/mol (9471.5512 without restraints) Performing minimization step: 1955. Total energy = 9471.8150 kcal/mol (9468.2521 without restraints) Performing minimization step: 1956. Total energy = 9468.5169 kcal/mol (9464.9550 without restraints) Performing minimization step: 1957. Total energy = 9465.2204 kcal/mol (9461.6595 without restraints) Performing minimization step: 1958. Total energy = 9461.9268 kcal/mol (9458.3669 without restraints) Performing minimization step: 1959. Total energy = 9458.6360 kcal/mol (9455.0772 without restraints) Performing minimization step: 1960. Total energy = 9455.3470 kcal/mol (9451.7892 without restraints) Performing minimization step: 1961. Total energy = 9452.0607 kcal/mol (9448.5039 without restraints) Performing minimization step: 1962. Total energy = 9448.7765 kcal/mol (9445.2208 without restraints) Performing minimization step: 1963. Total energy = 9445.4945 kcal/mol (9441.9397 without restraints) Performing minimization step: 1964. Total energy = 9442.2147 kcal/mol (9438.6610 without restraints) Performing minimization step: 1965. Total energy = 9438.9375 kcal/mol (9435.3847 without restraints) Performing minimization step: 1966. Total energy = 9435.6624 kcal/mol (9432.1108 without restraints) Performing minimization step: 1967. Total energy = 9432.3895 kcal/mol (9428.8388 without restraints) Performing minimization step: 1968. Total energy = 9429.1194 kcal/mol (9425.5697 without restraints) Performing minimization step: 1969. Total energy = 9425.8509 kcal/mol (9422.3022 without restraints) Performing minimization step: 1970. Total energy = 9422.5845 kcal/mol (9419.0369 without restraints) Performing minimization step: 1971. Total energy = 9419.3202 kcal/mol (9415.7736 without restraints) Performing minimization step: 1972. Total energy = 9416.0582 kcal/mol (9412.5126 without restraints) Performing minimization step: 1973. Total energy = 9412.7989 kcal/mol (9409.2542 without restraints) Performing minimization step: 1974. Total energy = 9409.5414 kcal/mol (9405.9978 without restraints) Performing minimization step: 1975. Total energy = 9406.2863 kcal/mol (9402.7436 without restraints) Performing minimization step: 1976. Total energy = 9403.0333 kcal/mol (9399.4917 without restraints) Performing minimization step: 1977. Total energy = 9399.7826 kcal/mol (9396.2420 without restraints) Performing minimization step: 1978. Total energy = 9396.5339 kcal/mol (9392.9941 without restraints) Performing minimization step: 1979. Total energy = 9393.2877 kcal/mol (9389.7491 without restraints) Performing minimization step: 1980. Total energy = 9390.0440 kcal/mol (9386.5065 without restraints) Performing minimization step: 1981. Total energy = 9386.8021 kcal/mol (9383.2655 without restraints) Performing minimization step: 1982. Total energy = 9383.5624 kcal/mol (9380.0269 without restraints) Performing minimization step: 1983. Total energy = 9380.3249 kcal/mol (9376.7903 without restraints) Performing minimization step: 1984. Total energy = 9377.0898 kcal/mol (9373.5563 without restraints) Performing minimization step: 1985. Total energy = 9373.8567 kcal/mol (9370.3241 without restraints) Performing minimization step: 1986. Total energy = 9370.6254 kcal/mol (9367.0938 without restraints) Performing minimization step: 1987. Total energy = 9367.3966 kcal/mol (9363.8661 without restraints) Performing minimization step: 1988. Total energy = 9364.1699 kcal/mol (9360.6403 without restraints) Performing minimization step: 1989. Total energy = 9360.9453 kcal/mol (9357.4168 without restraints) Performing minimization step: 1990. Total energy = 9357.7229 kcal/mol (9354.1955 without restraints) Performing minimization step: 1991. Total energy = 9354.5026 kcal/mol (9350.9760 without restraints) Performing minimization step: 1992. Total energy = 9351.2845 kcal/mol (9347.7590 without restraints) Performing minimization step: 1993. Total energy = 9348.0681 kcal/mol (9344.5436 without restraints) Performing minimization step: 1994. Total energy = 9344.8541 kcal/mol (9341.3306 without restraints) Performing minimization step: 1995. Total energy = 9341.6424 kcal/mol (9338.1199 without restraints) Performing minimization step: 1996. Total energy = 9338.4330 kcal/mol (9334.9115 without restraints) Performing minimization step: 1997. Total energy = 9335.2254 kcal/mol (9331.7047 without restraints) Performing minimization step: 1998. Total energy = 9332.0198 kcal/mol (9328.5002 without restraints) Performing minimization step: 1999. Total energy = 9328.8164 kcal/mol (9325.2980 without restraints) Performing minimization step: 2000. Total energy = 9325.6155 kcal/mol (9322.0980 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 9322.4167 kcal/mol (9318.9002 without restraints) Performing minimization step: 2002. Total energy = 9319.2196 kcal/mol (9315.7041 without restraints) Performing minimization step: 2003. Total energy = 9316.0245 kcal/mol (9312.5099 without restraints) Performing minimization step: 2004. Total energy = 9312.8313 kcal/mol (9309.3177 without restraints) Performing minimization step: 2005. Total energy = 9309.6400 kcal/mol (9306.1274 without restraints) Performing minimization step: 2006. Total energy = 9306.4513 kcal/mol (9302.9397 without restraints) Performing minimization step: 2007. Total energy = 9303.2648 kcal/mol (9299.7543 without restraints) Performing minimization step: 2008. Total energy = 9300.0802 kcal/mol (9296.5706 without restraints) Performing minimization step: 2009. Total energy = 9296.8972 kcal/mol (9293.3886 without restraints) Performing minimization step: 2010. Total energy = 9293.7168 kcal/mol (9290.2093 without restraints) Performing minimization step: 2011. Total energy = 9290.5379 kcal/mol (9287.0312 without restraints) Performing minimization step: 2012. Total energy = 9287.3614 kcal/mol (9283.8557 without restraints) Performing minimization step: 2013. Total energy = 9284.1870 kcal/mol (9280.6824 without restraints) Performing minimization step: 2014. Total energy = 9281.0144 kcal/mol (9277.5107 without restraints) Performing minimization step: 2015. Total energy = 9277.8436 kcal/mol (9274.3409 without restraints) Performing minimization step: 2016. Total energy = 9274.6752 kcal/mol (9271.1733 without restraints) Performing minimization step: 2017. Total energy = 9271.5085 kcal/mol (9268.0079 without restraints) Performing minimization step: 2018. Total energy = 9268.3441 kcal/mol (9264.8444 without restraints) Performing minimization step: 2019. Total energy = 9265.1815 kcal/mol (9261.6828 without restraints) Performing minimization step: 2020. Total energy = 9262.0212 kcal/mol (9258.5235 without restraints) Performing minimization step: 2021. Total energy = 9258.8626 kcal/mol (9255.3657 without restraints) Performing minimization step: 2022. Total energy = 9255.7068 kcal/mol (9252.2111 without restraints) Performing minimization step: 2023. Total energy = 9252.5523 kcal/mol (9249.0576 without restraints) Performing minimization step: 2024. Total energy = 9249.3993 kcal/mol (9245.9055 without restraints) Performing minimization step: 2025. Total energy = 9246.2490 kcal/mol (9242.7562 without restraints) Performing minimization step: 2026. Total energy = 9243.1000 kcal/mol (9239.6082 without restraints) Performing minimization step: 2027. Total energy = 9239.9533 kcal/mol (9236.4624 without restraints) Performing minimization step: 2028. Total energy = 9236.8084 kcal/mol (9233.3185 without restraints) Performing minimization step: 2029. Total energy = 9233.6658 kcal/mol (9230.1771 without restraints) Performing minimization step: 2030. Total energy = 9230.5253 kcal/mol (9227.0373 without restraints) Performing minimization step: 2031. Total energy = 9227.3862 kcal/mol (9223.8992 without restraints) Performing minimization step: 2032. Total energy = 9224.2492 kcal/mol (9220.7632 without restraints) Performing minimization step: 2033. Total energy = 9221.1141 kcal/mol (9217.6290 without restraints) Performing minimization step: 2034. Total energy = 9217.9809 kcal/mol (9214.4970 without restraints) Performing minimization step: 2035. Total energy = 9214.8499 kcal/mol (9211.3669 without restraints) Performing minimization step: 2036. Total energy = 9211.7207 kcal/mol (9208.2386 without restraints) Performing minimization step: 2037. Total energy = 9208.5934 kcal/mol (9205.1123 without restraints) Performing minimization step: 2038. Total energy = 9205.4678 kcal/mol (9201.9876 without restraints) Performing minimization step: 2039. Total energy = 9202.3443 kcal/mol (9198.8651 without restraints) Performing minimization step: 2040. Total energy = 9199.2229 kcal/mol (9195.7447 without restraints) Performing minimization step: 2041. Total energy = 9196.1029 kcal/mol (9192.6257 without restraints) Performing minimization step: 2042. Total energy = 9192.9848 kcal/mol (9189.5086 without restraints) Performing minimization step: 2043. Total energy = 9189.8686 kcal/mol (9186.3933 without restraints) Performing minimization step: 2044. Total energy = 9186.7543 kcal/mol (9183.2800 without restraints) Performing minimization step: 2045. Total energy = 9183.6419 kcal/mol (9180.1685 without restraints) Performing minimization step: 2046. Total energy = 9180.5310 kcal/mol (9177.0585 without restraints) Performing minimization step: 2047. Total energy = 9177.4222 kcal/mol (9173.9507 without restraints) Performing minimization step: 2048. Total energy = 9174.3155 kcal/mol (9170.8450 without restraints) Performing minimization step: 2049. Total energy = 9171.2102 kcal/mol (9167.7406 without restraints) Performing minimization step: 2050. Total energy = 9168.1072 kcal/mol (9164.6386 without restraints) Performing minimization step: 2051. Total energy = 9165.0060 kcal/mol (9161.5384 without restraints) Performing minimization step: 2052. Total energy = 9161.9066 kcal/mol (9158.4400 without restraints) Performing minimization step: 2053. Total energy = 9158.8089 kcal/mol (9155.3432 without restraints) Performing minimization step: 2054. Total energy = 9155.7133 kcal/mol (9152.2488 without restraints) Performing minimization step: 2055. Total energy = 9152.6197 kcal/mol (9149.1559 without restraints) Performing minimization step: 2056. Total energy = 9149.5274 kcal/mol (9146.0646 without restraints) Performing minimization step: 2057. Total energy = 9146.4371 kcal/mol (9142.9753 without restraints) Performing minimization step: 2058. Total energy = 9143.3480 kcal/mol (9139.8872 without restraints) Performing minimization step: 2059. Total energy = 9140.2611 kcal/mol (9136.8012 without restraints) Performing minimization step: 2060. Total energy = 9137.1756 kcal/mol (9133.7166 without restraints) Performing minimization step: 2061. Total energy = 9134.0922 kcal/mol (9130.6343 without restraints) Performing minimization step: 2062. Total energy = 9131.0108 kcal/mol (9127.5539 without restraints) Performing minimization step: 2063. Total energy = 9127.9314 kcal/mol (9124.4753 without restraints) Performing minimization step: 2064. Total energy = 9124.8537 kcal/mol (9121.3986 without restraints) Performing minimization step: 2065. Total energy = 9121.7777 kcal/mol (9118.3234 without restraints) Performing minimization step: 2066. Total energy = 9118.7032 kcal/mol (9115.2500 without restraints) Performing minimization step: 2067. Total energy = 9115.6304 kcal/mol (9112.1780 without restraints) Performing minimization step: 2068. Total energy = 9112.5596 kcal/mol (9109.1083 without restraints) Performing minimization step: 2069. Total energy = 9109.4904 kcal/mol (9106.0401 without restraints) Performing minimization step: 2070. Total energy = 9106.4233 kcal/mol (9102.9739 without restraints) Performing minimization step: 2071. Total energy = 9103.3575 kcal/mol (9099.9089 without restraints) Performing minimization step: 2072. Total energy = 9100.2938 kcal/mol (9096.8463 without restraints) Performing minimization step: 2073. Total energy = 9097.2317 kcal/mol (9093.7852 without restraints) Performing minimization step: 2074. Total energy = 9094.1710 kcal/mol (9090.7254 without restraints) Performing minimization step: 2075. Total energy = 9091.1121 kcal/mol (9087.6674 without restraints) Performing minimization step: 2076. Total energy = 9088.0547 kcal/mol (9084.6111 without restraints) Performing minimization step: 2077. Total energy = 9084.9991 kcal/mol (9081.5563 without restraints) Performing minimization step: 2078. Total energy = 9081.9456 kcal/mol (9078.5038 without restraints) Performing minimization step: 2079. Total energy = 9078.8932 kcal/mol (9075.4522 without restraints) Performing minimization step: 2080. Total energy = 9075.8429 kcal/mol (9072.4030 without restraints) Performing minimization step: 2081. Total energy = 9072.7951 kcal/mol (9069.3562 without restraints) Performing minimization step: 2082. Total energy = 9069.7485 kcal/mol (9066.3105 without restraints) Performing minimization step: 2083. Total energy = 9066.7035 kcal/mol (9063.2664 without restraints) Performing minimization step: 2084. Total energy = 9063.6602 kcal/mol (9060.2242 without restraints) Performing minimization step: 2085. Total energy = 9060.6183 kcal/mol (9057.1831 without restraints) Performing minimization step: 2086. Total energy = 9057.5783 kcal/mol (9054.1442 without restraints) Performing minimization step: 2087. Total energy = 9054.5399 kcal/mol (9051.1066 without restraints) Performing minimization step: 2088. Total energy = 9051.5038 kcal/mol (9048.0716 without restraints) Performing minimization step: 2089. Total energy = 9048.4691 kcal/mol (9045.0378 without restraints) Performing minimization step: 2090. Total energy = 9045.4353 kcal/mol (9042.0048 without restraints) Performing minimization step: 2091. Total energy = 9042.4032 kcal/mol (9038.9736 without restraints) Performing minimization step: 2092. Total energy = 9039.3728 kcal/mol (9035.9442 without restraints) Performing minimization step: 2093. Total energy = 9036.3442 kcal/mol (9032.9166 without restraints) Performing minimization step: 2094. Total energy = 9033.3175 kcal/mol (9029.8907 without restraints) Performing minimization step: 2095. Total energy = 9030.2919 kcal/mol (9026.8661 without restraints) Performing minimization step: 2096. Total energy = 9027.2686 kcal/mol (9023.8438 without restraints) Performing minimization step: 2097. Total energy = 9024.2463 kcal/mol (9020.8223 without restraints) Performing minimization step: 2098. Total energy = 9021.2262 kcal/mol (9017.8032 without restraints) Performing minimization step: 2099. Total energy = 9018.2074 kcal/mol (9014.7853 without restraints) Performing minimization step: 2100. Total energy = 9015.1903 kcal/mol (9011.7693 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 9012.1749 kcal/mol (9008.7548 without restraints) Performing minimization step: 2102. Total energy = 9009.1609 kcal/mol (9005.7415 without restraints) Performing minimization step: 2103. Total energy = 9006.1481 kcal/mol (9002.7297 without restraints) Performing minimization step: 2104. Total energy = 9003.1375 kcal/mol (8999.7201 without restraints) Performing minimization step: 2105. Total energy = 9000.1286 kcal/mol (8996.7121 without restraints) Performing minimization step: 2106. Total energy = 8997.1220 kcal/mol (8993.7064 without restraints) Performing minimization step: 2107. Total energy = 8994.1156 kcal/mol (8990.7010 without restraints) Performing minimization step: 2108. Total energy = 8991.1113 kcal/mol (8987.6976 without restraints) Performing minimization step: 2109. Total energy = 8988.1083 kcal/mol (8984.6955 without restraints) Performing minimization step: 2110. Total energy = 8985.1072 kcal/mol (8981.6954 without restraints) Performing minimization step: 2111. Total energy = 8982.1075 kcal/mol (8978.6966 without restraints) Performing minimization step: 2112. Total energy = 8979.1091 kcal/mol (8975.6991 without restraints) Performing minimization step: 2113. Total energy = 8976.1123 kcal/mol (8972.7032 without restraints) Performing minimization step: 2114. Total energy = 8973.1173 kcal/mol (8969.7092 without restraints) Performing minimization step: 2115. Total energy = 8970.1235 kcal/mol (8966.7163 without restraints) Performing minimization step: 2116. Total energy = 8967.1315 kcal/mol (8963.7253 without restraints) Performing minimization step: 2117. Total energy = 8964.1412 kcal/mol (8960.7357 without restraints) Performing minimization step: 2118. Total energy = 8961.1520 kcal/mol (8957.7475 without restraints) Performing minimization step: 2119. Total energy = 8958.1650 kcal/mol (8954.7615 without restraints) Performing minimization step: 2120. Total energy = 8955.1792 kcal/mol (8951.7766 without restraints) Performing minimization step: 2121. Total energy = 8952.1946 kcal/mol (8948.7930 without restraints) Performing minimization step: 2122. Total energy = 8949.2116 kcal/mol (8945.8108 without restraints) Performing minimization step: 2123. Total energy = 8946.2301 kcal/mol (8942.8302 without restraints) Performing minimization step: 2124. Total energy = 8943.2505 kcal/mol (8939.8515 without restraints) Performing minimization step: 2125. Total energy = 8940.2721 kcal/mol (8936.8741 without restraints) Performing minimization step: 2126. Total energy = 8937.2951 kcal/mol (8933.8979 without restraints) Performing minimization step: 2127. Total energy = 8934.3196 kcal/mol (8930.9234 without restraints) Performing minimization step: 2128. Total energy = 8931.3457 kcal/mol (8927.9505 without restraints) Performing minimization step: 2129. Total energy = 8928.3735 kcal/mol (8924.9792 without restraints) Performing minimization step: 2130. Total energy = 8925.4025 kcal/mol (8922.0090 without restraints) Performing minimization step: 2131. Total energy = 8922.4328 kcal/mol (8919.0403 without restraints) Performing minimization step: 2132. Total energy = 8919.4647 kcal/mol (8916.0730 without restraints) Performing minimization step: 2133. Total energy = 8916.4982 kcal/mol (8913.1075 without restraints) Performing minimization step: 2134. Total energy = 8913.5330 kcal/mol (8910.1431 without restraints) Performing minimization step: 2135. Total energy = 8910.5692 kcal/mol (8907.1803 without restraints) Performing minimization step: 2136. Total energy = 8907.6073 kcal/mol (8904.2194 without restraints) Performing minimization step: 2137. Total energy = 8904.6470 kcal/mol (8901.2599 without restraints) Performing minimization step: 2138. Total energy = 8901.6877 kcal/mol (8898.3016 without restraints) Performing minimization step: 2139. Total energy = 8898.7303 kcal/mol (8895.3451 without restraints) Performing minimization step: 2140. Total energy = 8895.7739 kcal/mol (8892.3896 without restraints) Performing minimization step: 2141. Total energy = 8892.8191 kcal/mol (8889.4357 without restraints) Performing minimization step: 2142. Total energy = 8889.8653 kcal/mol (8886.4827 without restraints) Performing minimization step: 2143. Total energy = 8886.9131 kcal/mol (8883.5316 without restraints) Performing minimization step: 2144. Total energy = 8883.9624 kcal/mol (8880.5818 without restraints) Performing minimization step: 2145. Total energy = 8881.0132 kcal/mol (8877.6333 without restraints) Performing minimization step: 2146. Total energy = 8878.0652 kcal/mol (8874.6862 without restraints) Performing minimization step: 2147. Total energy = 8875.1187 kcal/mol (8871.7407 without restraints) Performing minimization step: 2148. Total energy = 8872.1733 kcal/mol (8868.7962 without restraints) Performing minimization step: 2149. Total energy = 8869.2295 kcal/mol (8865.8533 without restraints) Performing minimization step: 2150. Total energy = 8866.2869 kcal/mol (8862.9116 without restraints) Performing minimization step: 2151. Total energy = 8863.3459 kcal/mol (8859.9715 without restraints) Performing minimization step: 2152. Total energy = 8860.4065 kcal/mol (8857.0330 without restraints) Performing minimization step: 2153. Total energy = 8857.4683 kcal/mol (8854.0956 without restraints) Performing minimization step: 2154. Total energy = 8854.5314 kcal/mol (8851.1597 without restraints) Performing minimization step: 2155. Total energy = 8851.5963 kcal/mol (8848.2255 without restraints) Performing minimization step: 2156. Total energy = 8848.6622 kcal/mol (8845.2922 without restraints) Performing minimization step: 2157. Total energy = 8845.7295 kcal/mol (8842.3604 without restraints) Performing minimization step: 2158. Total energy = 8842.7980 kcal/mol (8839.4299 without restraints) Performing minimization step: 2159. Total energy = 8839.8679 kcal/mol (8836.5007 without restraints) Performing minimization step: 2160. Total energy = 8836.9396 kcal/mol (8833.5732 without restraints) Performing minimization step: 2161. Total energy = 8834.0121 kcal/mol (8830.6465 without restraints) Performing minimization step: 2162. Total energy = 8831.0858 kcal/mol (8827.7212 without restraints) Performing minimization step: 2163. Total energy = 8828.1613 kcal/mol (8824.7977 without restraints) Performing minimization step: 2164. Total energy = 8825.2382 kcal/mol (8821.8754 without restraints) Performing minimization step: 2165. Total energy = 8822.3164 kcal/mol (8818.9545 without restraints) Performing minimization step: 2166. Total energy = 8819.3959 kcal/mol (8816.0349 without restraints) Performing minimization step: 2167. Total energy = 8816.4766 kcal/mol (8813.1165 without restraints) Performing minimization step: 2168. Total energy = 8813.5583 kcal/mol (8810.1989 without restraints) Performing minimization step: 2169. Total energy = 8810.6414 kcal/mol (8807.2831 without restraints) Performing minimization step: 2170. Total energy = 8807.7261 kcal/mol (8804.3687 without restraints) Performing minimization step: 2171. Total energy = 8804.8121 kcal/mol (8801.4555 without restraints) Performing minimization step: 2172. Total energy = 8801.8995 kcal/mol (8798.5438 without restraints) Performing minimization step: 2173. Total energy = 8798.9879 kcal/mol (8795.6331 without restraints) Performing minimization step: 2174. Total energy = 8796.0778 kcal/mol (8792.7239 without restraints) Performing minimization step: 2175. Total energy = 8793.1692 kcal/mol (8789.8161 without restraints) Performing minimization step: 2176. Total energy = 8790.2616 kcal/mol (8786.9094 without restraints) Performing minimization step: 2177. Total energy = 8787.3553 kcal/mol (8784.0041 without restraints) Performing minimization step: 2178. Total energy = 8784.4501 kcal/mol (8781.0998 without restraints) Performing minimization step: 2179. Total energy = 8781.5471 kcal/mol (8778.1976 without restraints) Performing minimization step: 2180. Total energy = 8778.6444 kcal/mol (8775.2958 without restraints) Performing minimization step: 2181. Total energy = 8775.7434 kcal/mol (8772.3958 without restraints) Performing minimization step: 2182. Total energy = 8772.8435 kcal/mol (8769.4966 without restraints) Performing minimization step: 2183. Total energy = 8769.9447 kcal/mol (8766.5986 without restraints) Performing minimization step: 2184. Total energy = 8767.0475 kcal/mol (8763.7024 without restraints) Performing minimization step: 2185. Total energy = 8764.1515 kcal/mol (8760.8072 without restraints) Performing minimization step: 2186. Total energy = 8761.2571 kcal/mol (8757.9139 without restraints) Performing minimization step: 2187. Total energy = 8758.3637 kcal/mol (8755.0212 without restraints) Performing minimization step: 2188. Total energy = 8755.4715 kcal/mol (8752.1299 without restraints) Performing minimization step: 2189. Total energy = 8752.5805 kcal/mol (8749.2398 without restraints) Performing minimization step: 2190. Total energy = 8749.6908 kcal/mol (8746.3509 without restraints) Performing minimization step: 2191. Total energy = 8746.8022 kcal/mol (8743.4632 without restraints) Performing minimization step: 2192. Total energy = 8743.9145 kcal/mol (8740.5765 without restraints) Performing minimization step: 2193. Total energy = 8741.0285 kcal/mol (8737.6913 without restraints) Performing minimization step: 2194. Total energy = 8738.1440 kcal/mol (8734.8078 without restraints) Performing minimization step: 2195. Total energy = 8735.2607 kcal/mol (8731.9252 without restraints) Performing minimization step: 2196. Total energy = 8732.3786 kcal/mol (8729.0442 without restraints) Performing minimization step: 2197. Total energy = 8729.4976 kcal/mol (8726.1639 without restraints) Performing minimization step: 2198. Total energy = 8726.6176 kcal/mol (8723.2847 without restraints) Performing minimization step: 2199. Total energy = 8723.7388 kcal/mol (8720.4068 without restraints) Performing minimization step: 2200. Total energy = 8720.8614 kcal/mol (8717.5303 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 8717.9851 kcal/mol (8714.6548 without restraints) Performing minimization step: 2202. Total energy = 8715.1097 kcal/mol (8711.7803 without restraints) Performing minimization step: 2203. Total energy = 8712.2357 kcal/mol (8708.9071 without restraints) Performing minimization step: 2204. Total energy = 8709.3627 kcal/mol (8706.0350 without restraints) Performing minimization step: 2205. Total energy = 8706.4912 kcal/mol (8703.1644 without restraints) Performing minimization step: 2206. Total energy = 8703.6210 kcal/mol (8700.2953 without restraints) Performing minimization step: 2207. Total energy = 8700.7523 kcal/mol (8697.4272 without restraints) Performing minimization step: 2208. Total energy = 8697.8844 kcal/mol (8694.5601 without restraints) Performing minimization step: 2209. Total energy = 8695.0174 kcal/mol (8691.6941 without restraints) Performing minimization step: 2210. Total energy = 8692.1517 kcal/mol (8688.8292 without restraints) Performing minimization step: 2211. Total energy = 8689.2874 kcal/mol (8685.9658 without restraints) Performing minimization step: 2212. Total energy = 8686.4241 kcal/mol (8683.1033 without restraints) Performing minimization step: 2213. Total energy = 8683.5620 kcal/mol (8680.2422 without restraints) Performing minimization step: 2214. Total energy = 8680.7009 kcal/mol (8677.3819 without restraints) Performing minimization step: 2215. Total energy = 8677.8412 kcal/mol (8674.5230 without restraints) Performing minimization step: 2216. Total energy = 8674.9827 kcal/mol (8671.6654 without restraints) Performing minimization step: 2217. Total energy = 8672.1251 kcal/mol (8668.8086 without restraints) Performing minimization step: 2218. Total energy = 8669.2689 kcal/mol (8665.9532 without restraints) Performing minimization step: 2219. Total energy = 8666.4134 kcal/mol (8663.0987 without restraints) Performing minimization step: 2220. Total energy = 8663.5593 kcal/mol (8660.2454 without restraints) Performing minimization step: 2221. Total energy = 8660.7064 kcal/mol (8657.3933 without restraints) Performing minimization step: 2222. Total energy = 8657.8546 kcal/mol (8654.5424 without restraints) Performing minimization step: 2223. Total energy = 8655.0037 kcal/mol (8651.6924 without restraints) Performing minimization step: 2224. Total energy = 8652.1546 kcal/mol (8648.8442 without restraints) Performing minimization step: 2225. Total energy = 8649.3062 kcal/mol (8645.9966 without restraints) Performing minimization step: 2226. Total energy = 8646.4586 kcal/mol (8643.1498 without restraints) Performing minimization step: 2227. Total energy = 8643.6124 kcal/mol (8640.3045 without restraints) Performing minimization step: 2228. Total energy = 8640.7674 kcal/mol (8637.4603 without restraints) Performing minimization step: 2229. Total energy = 8637.9235 kcal/mol (8634.6173 without restraints) Performing minimization step: 2230. Total energy = 8635.0808 kcal/mol (8631.7755 without restraints) Performing minimization step: 2231. Total energy = 8632.2390 kcal/mol (8628.9345 without restraints) Performing minimization step: 2232. Total energy = 8629.3980 kcal/mol (8626.0943 without restraints) Performing minimization step: 2233. Total energy = 8626.5587 kcal/mol (8623.2559 without restraints) Performing minimization step: 2234. Total energy = 8623.7205 kcal/mol (8620.4187 without restraints) Performing minimization step: 2235. Total energy = 8620.8835 kcal/mol (8617.5823 without restraints) Performing minimization step: 2236. Total energy = 8618.0474 kcal/mol (8614.7471 without restraints) Performing minimization step: 2237. Total energy = 8615.2121 kcal/mol (8611.9127 without restraints) Performing minimization step: 2238. Total energy = 8612.3781 kcal/mol (8609.0796 without restraints) Performing minimization step: 2239. Total energy = 8609.5451 kcal/mol (8606.2475 without restraints) Performing minimization step: 2240. Total energy = 8606.7133 kcal/mol (8603.4164 without restraints) Performing minimization step: 2241. Total energy = 8603.8821 kcal/mol (8600.5860 without restraints) Performing minimization step: 2242. Total energy = 8601.0526 kcal/mol (8597.7575 without restraints) Performing minimization step: 2243. Total energy = 8598.2241 kcal/mol (8594.9299 without restraints) Performing minimization step: 2244. Total energy = 8595.3968 kcal/mol (8592.1032 without restraints) Performing minimization step: 2245. Total energy = 8592.5704 kcal/mol (8589.2777 without restraints) Performing minimization step: 2246. Total energy = 8589.7450 kcal/mol (8586.4532 without restraints) Performing minimization step: 2247. Total energy = 8586.9204 kcal/mol (8583.6294 without restraints) Performing minimization step: 2248. Total energy = 8584.0971 kcal/mol (8580.8069 without restraints) Performing minimization step: 2249. Total energy = 8581.2746 kcal/mol (8577.9853 without restraints) Performing minimization step: 2250. Total energy = 8578.4531 kcal/mol (8575.1645 without restraints) Performing minimization step: 2251. Total energy = 8575.6329 kcal/mol (8572.3453 without restraints) Performing minimization step: 2252. Total energy = 8572.8138 kcal/mol (8569.5270 without restraints) Performing minimization step: 2253. Total energy = 8569.9957 kcal/mol (8566.7097 without restraints) Performing minimization step: 2254. Total energy = 8567.1789 kcal/mol (8563.8937 without restraints) Performing minimization step: 2255. Total energy = 8564.3629 kcal/mol (8561.0786 without restraints) Performing minimization step: 2256. Total energy = 8561.5479 kcal/mol (8558.2644 without restraints) Performing minimization step: 2257. Total energy = 8558.7342 kcal/mol (8555.4516 without restraints) Performing minimization step: 2258. Total energy = 8555.9214 kcal/mol (8552.6395 without restraints) Performing minimization step: 2259. Total energy = 8553.1095 kcal/mol (8549.8285 without restraints) Performing minimization step: 2260. Total energy = 8550.2986 kcal/mol (8547.0185 without restraints) Performing minimization step: 2261. Total energy = 8547.4888 kcal/mol (8544.2095 without restraints) Performing minimization step: 2262. Total energy = 8544.6800 kcal/mol (8541.4015 without restraints) Performing minimization step: 2263. Total energy = 8541.8725 kcal/mol (8538.5948 without restraints) Performing minimization step: 2264. Total energy = 8539.0659 kcal/mol (8535.7892 without restraints) Performing minimization step: 2265. Total energy = 8536.2603 kcal/mol (8532.9844 without restraints) Performing minimization step: 2266. Total energy = 8533.4554 kcal/mol (8530.1803 without restraints) Performing minimization step: 2267. Total energy = 8530.6519 kcal/mol (8527.3776 without restraints) Performing minimization step: 2268. Total energy = 8527.8491 kcal/mol (8524.5756 without restraints) Performing minimization step: 2269. Total energy = 8525.0478 kcal/mol (8521.7751 without restraints) Performing minimization step: 2270. Total energy = 8522.2470 kcal/mol (8518.9752 without restraints) Performing minimization step: 2271. Total energy = 8519.4473 kcal/mol (8516.1763 without restraints) Performing minimization step: 2272. Total energy = 8516.6483 kcal/mol (8513.3781 without restraints) Performing minimization step: 2273. Total energy = 8513.8505 kcal/mol (8510.5812 without restraints) Performing minimization step: 2274. Total energy = 8511.0538 kcal/mol (8507.7852 without restraints) Performing minimization step: 2275. Total energy = 8508.2582 kcal/mol (8504.9904 without restraints) Performing minimization step: 2276. Total energy = 8505.4632 kcal/mol (8502.1963 without restraints) Performing minimization step: 2277. Total energy = 8502.6694 kcal/mol (8499.4032 without restraints) Performing minimization step: 2278. Total energy = 8499.8766 kcal/mol (8496.6114 without restraints) Performing minimization step: 2279. Total energy = 8497.0852 kcal/mol (8493.8208 without restraints) Performing minimization step: 2280. Total energy = 8494.2943 kcal/mol (8491.0307 without restraints) Performing minimization step: 2281. Total energy = 8491.5042 kcal/mol (8488.2414 without restraints) Performing minimization step: 2282. Total energy = 8488.7154 kcal/mol (8485.4534 without restraints) Performing minimization step: 2283. Total energy = 8485.9271 kcal/mol (8482.6659 without restraints) Performing minimization step: 2284. Total energy = 8483.1407 kcal/mol (8479.8803 without restraints) Performing minimization step: 2285. Total energy = 8480.3543 kcal/mol (8477.0947 without restraints) Performing minimization step: 2286. Total energy = 8477.5691 kcal/mol (8474.3104 without restraints) Performing minimization step: 2287. Total energy = 8474.7858 kcal/mol (8471.5279 without restraints) Performing minimization step: 2288. Total energy = 8472.0025 kcal/mol (8468.7454 without restraints) Performing minimization step: 2289. Total energy = 8469.2205 kcal/mol (8465.9643 without restraints) Performing minimization step: 2290. Total energy = 8466.4393 kcal/mol (8463.1840 without restraints) Performing minimization step: 2291. Total energy = 8463.6590 kcal/mol (8460.4044 without restraints) Performing minimization step: 2292. Total energy = 8460.8797 kcal/mol (8457.6259 without restraints) Performing minimization step: 2293. Total energy = 8458.1012 kcal/mol (8454.8482 without restraints) Performing minimization step: 2294. Total energy = 8455.3239 kcal/mol (8452.0718 without restraints) Performing minimization step: 2295. Total energy = 8452.5472 kcal/mol (8449.2958 without restraints) Performing minimization step: 2296. Total energy = 8449.7717 kcal/mol (8446.5211 without restraints) Performing minimization step: 2297. Total energy = 8446.9971 kcal/mol (8443.7474 without restraints) Performing minimization step: 2298. Total energy = 8444.2235 kcal/mol (8440.9748 without restraints) Performing minimization step: 2299. Total energy = 8441.4510 kcal/mol (8438.2027 without restraints) Performing minimization step: 2300. Total energy = 8438.6795 kcal/mol (8435.4322 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 8435.9086 kcal/mol (8432.6621 without restraints) Performing minimization step: 2302. Total energy = 8433.1386 kcal/mol (8429.8930 without restraints) Performing minimization step: 2303. Total energy = 8430.3695 kcal/mol (8427.1246 without restraints) Performing minimization step: 2304. Total energy = 8427.6019 kcal/mol (8424.3580 without restraints) Performing minimization step: 2305. Total energy = 8424.8348 kcal/mol (8421.5915 without restraints) Performing minimization step: 2306. Total energy = 8422.0686 kcal/mol (8418.8262 without restraints) Performing minimization step: 2307. Total energy = 8419.3032 kcal/mol (8416.0615 without restraints) Performing minimization step: 2308. Total energy = 8416.5383 kcal/mol (8413.2973 without restraints) Performing minimization step: 2309. Total energy = 8413.7747 kcal/mol (8410.5346 without restraints) Performing minimization step: 2310. Total energy = 8411.0120 kcal/mol (8407.7727 without restraints) Performing minimization step: 2311. Total energy = 8408.2500 kcal/mol (8405.0116 without restraints) Performing minimization step: 2312. Total energy = 8405.4888 kcal/mol (8402.2511 without restraints) Performing minimization step: 2313. Total energy = 8402.7290 kcal/mol (8399.4922 without restraints) Performing minimization step: 2314. Total energy = 8399.9699 kcal/mol (8396.7338 without restraints) Performing minimization step: 2315. Total energy = 8397.2117 kcal/mol (8393.9764 without restraints) Performing minimization step: 2316. Total energy = 8394.4540 kcal/mol (8391.2196 without restraints) Performing minimization step: 2317. Total energy = 8391.6976 kcal/mol (8388.4640 without restraints) Performing minimization step: 2318. Total energy = 8388.9422 kcal/mol (8385.7095 without restraints) Performing minimization step: 2319. Total energy = 8386.1880 kcal/mol (8382.9559 without restraints) Performing minimization step: 2320. Total energy = 8383.4343 kcal/mol (8380.2031 without restraints) Performing minimization step: 2321. Total energy = 8380.6814 kcal/mol (8377.4510 without restraints) Performing minimization step: 2322. Total energy = 8377.9292 kcal/mol (8374.6995 without restraints) Performing minimization step: 2323. Total energy = 8375.1783 kcal/mol (8371.9495 without restraints) Performing minimization step: 2324. Total energy = 8372.4286 kcal/mol (8369.2007 without restraints) Performing minimization step: 2325. Total energy = 8369.6796 kcal/mol (8366.4525 without restraints) Performing minimization step: 2326. Total energy = 8366.9310 kcal/mol (8363.7046 without restraints) Performing minimization step: 2327. Total energy = 8364.1832 kcal/mol (8360.9575 without restraints) Performing minimization step: 2328. Total energy = 8361.4364 kcal/mol (8358.2117 without restraints) Performing minimization step: 2329. Total energy = 8358.6906 kcal/mol (8355.4664 without restraints) Performing minimization step: 2330. Total energy = 8355.9455 kcal/mol (8352.7223 without restraints) Performing minimization step: 2331. Total energy = 8353.2014 kcal/mol (8349.9788 without restraints) Performing minimization step: 2332. Total energy = 8350.4581 kcal/mol (8347.2364 without restraints) Performing minimization step: 2333. Total energy = 8347.7157 kcal/mol (8344.4948 without restraints) Performing minimization step: 2334. Total energy = 8344.9746 kcal/mol (8341.7545 without restraints) Performing minimization step: 2335. Total energy = 8342.2341 kcal/mol (8339.0148 without restraints) Performing minimization step: 2336. Total energy = 8339.4947 kcal/mol (8336.2762 without restraints) Performing minimization step: 2337. Total energy = 8336.7561 kcal/mol (8333.5385 without restraints) Performing minimization step: 2338. Total energy = 8334.0181 kcal/mol (8330.8012 without restraints) Performing minimization step: 2339. Total energy = 8331.2808 kcal/mol (8328.0647 without restraints) Performing minimization step: 2340. Total energy = 8328.5444 kcal/mol (8325.3290 without restraints) Performing minimization step: 2341. Total energy = 8325.8088 kcal/mol (8322.5942 without restraints) Performing minimization step: 2342. Total energy = 8323.0737 kcal/mol (8319.8598 without restraints) Performing minimization step: 2343. Total energy = 8320.3397 kcal/mol (8317.1267 without restraints) Performing minimization step: 2344. Total energy = 8317.6067 kcal/mol (8314.3945 without restraints) Performing minimization step: 2345. Total energy = 8314.8747 kcal/mol (8311.6634 without restraints) Performing minimization step: 2346. Total energy = 8312.1438 kcal/mol (8308.9332 without restraints) Performing minimization step: 2347. Total energy = 8309.4134 kcal/mol (8306.2035 without restraints) Performing minimization step: 2348. Total energy = 8306.6836 kcal/mol (8303.4745 without restraints) Performing minimization step: 2349. Total energy = 8303.9548 kcal/mol (8300.7465 without restraints) Performing minimization step: 2350. Total energy = 8301.2267 kcal/mol (8298.0191 without restraints) Performing minimization step: 2351. Total energy = 8298.4999 kcal/mol (8295.2932 without restraints) Performing minimization step: 2352. Total energy = 8295.7738 kcal/mol (8292.5678 without restraints) Performing minimization step: 2353. Total energy = 8293.0482 kcal/mol (8289.8431 without restraints) Performing minimization step: 2354. Total energy = 8290.3236 kcal/mol (8287.1192 without restraints) Performing minimization step: 2355. Total energy = 8287.5997 kcal/mol (8284.3961 without restraints) Performing minimization step: 2356. Total energy = 8284.8766 kcal/mol (8281.6738 without restraints) Performing minimization step: 2357. Total energy = 8282.1545 kcal/mol (8278.9525 without restraints) Performing minimization step: 2358. Total energy = 8279.4331 kcal/mol (8276.2319 without restraints) Performing minimization step: 2359. Total energy = 8276.7128 kcal/mol (8273.5124 without restraints) Performing minimization step: 2360. Total energy = 8273.9931 kcal/mol (8270.7934 without restraints) Performing minimization step: 2361. Total energy = 8271.2738 kcal/mol (8268.0750 without restraints) Performing minimization step: 2362. Total energy = 8268.5558 kcal/mol (8265.3578 without restraints) Performing minimization step: 2363. Total energy = 8265.8383 kcal/mol (8262.6410 without restraints) Performing minimization step: 2364. Total energy = 8263.1223 kcal/mol (8259.9260 without restraints) Performing minimization step: 2365. Total energy = 8260.4070 kcal/mol (8257.2112 without restraints) Performing minimization step: 2366. Total energy = 8257.6931 kcal/mol (8254.4981 without restraints) Performing minimization step: 2367. Total energy = 8254.9789 kcal/mol (8251.7846 without restraints) Performing minimization step: 2368. Total energy = 8252.2658 kcal/mol (8249.0724 without restraints) Performing minimization step: 2369. Total energy = 8249.5533 kcal/mol (8246.3607 without restraints) Performing minimization step: 2370. Total energy = 8246.8418 kcal/mol (8243.6499 without restraints) Performing minimization step: 2371. Total energy = 8244.1314 kcal/mol (8240.9403 without restraints) Performing minimization step: 2372. Total energy = 8241.4217 kcal/mol (8238.2313 without restraints) Performing minimization step: 2373. Total energy = 8238.7123 kcal/mol (8235.5227 without restraints) Performing minimization step: 2374. Total energy = 8236.0042 kcal/mol (8232.8154 without restraints) Performing minimization step: 2375. Total energy = 8233.2966 kcal/mol (8230.1086 without restraints) Performing minimization step: 2376. Total energy = 8230.5899 kcal/mol (8227.4027 without restraints) Performing minimization step: 2377. Total energy = 8227.8840 kcal/mol (8224.6976 without restraints) Performing minimization step: 2378. Total energy = 8225.1784 kcal/mol (8221.9927 without restraints) Performing minimization step: 2379. Total energy = 8222.4741 kcal/mol (8219.2892 without restraints) Performing minimization step: 2380. Total energy = 8219.7706 kcal/mol (8216.5865 without restraints) Performing minimization step: 2381. Total energy = 8217.0683 kcal/mol (8213.8849 without restraints) Performing minimization step: 2382. Total energy = 8214.3667 kcal/mol (8211.1841 without restraints) Performing minimization step: 2383. Total energy = 8211.6660 kcal/mol (8208.4842 without restraints) Performing minimization step: 2384. Total energy = 8208.9656 kcal/mol (8205.7845 without restraints) Performing minimization step: 2385. Total energy = 8206.2663 kcal/mol (8203.0862 without restraints) Performing minimization step: 2386. Total energy = 8203.5678 kcal/mol (8200.3883 without restraints) Performing minimization step: 2387. Total energy = 8200.8695 kcal/mol (8197.6907 without restraints) Performing minimization step: 2388. Total energy = 8198.1721 kcal/mol (8194.9941 without restraints) Performing minimization step: 2389. Total energy = 8195.4759 kcal/mol (8192.2988 without restraints) Performing minimization step: 2390. Total energy = 8192.7806 kcal/mol (8189.6042 without restraints) Performing minimization step: 2391. Total energy = 8190.0863 kcal/mol (8186.9109 without restraints) Performing minimization step: 2392. Total energy = 8187.3929 kcal/mol (8184.2179 without restraints) Performing minimization step: 2393. Total energy = 8184.7001 kcal/mol (8181.5260 without restraints) Performing minimization step: 2394. Total energy = 8182.0078 kcal/mol (8178.8344 without restraints) Performing minimization step: 2395. Total energy = 8179.3165 kcal/mol (8176.1440 without restraints) Performing minimization step: 2396. Total energy = 8176.6257 kcal/mol (8173.4539 without restraints) Performing minimization step: 2397. Total energy = 8173.9359 kcal/mol (8170.7650 without restraints) Performing minimization step: 2398. Total energy = 8171.2469 kcal/mol (8168.0764 without restraints) Performing minimization step: 2399. Total energy = 8168.5582 kcal/mol (8165.3886 without restraints) Performing minimization step: 2400. Total energy = 8165.8703 kcal/mol (8162.7016 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 8163.1835 kcal/mol (8160.0154 without restraints) Performing minimization step: 2402. Total energy = 8160.4972 kcal/mol (8157.3299 without restraints) Performing minimization step: 2403. Total energy = 8157.8113 kcal/mol (8154.6447 without restraints) Performing minimization step: 2404. Total energy = 8155.1268 kcal/mol (8151.9610 without restraints) Performing minimization step: 2405. Total energy = 8152.4431 kcal/mol (8149.2781 without restraints) Performing minimization step: 2406. Total energy = 8149.7602 kcal/mol (8146.5959 without restraints) Performing minimization step: 2407. Total energy = 8147.0778 kcal/mol (8143.9141 without restraints) Performing minimization step: 2408. Total energy = 8144.3960 kcal/mol (8141.2333 without restraints) Performing minimization step: 2409. Total energy = 8141.7155 kcal/mol (8138.5535 without restraints) Performing minimization step: 2410. Total energy = 8139.0354 kcal/mol (8135.8742 without restraints) Performing minimization step: 2411. Total energy = 8136.3567 kcal/mol (8133.1964 without restraints) Performing minimization step: 2412. Total energy = 8133.6783 kcal/mol (8130.5186 without restraints) Performing minimization step: 2413. Total energy = 8131.0007 kcal/mol (8127.8417 without restraints) Performing minimization step: 2414. Total energy = 8128.3246 kcal/mol (8125.1664 without restraints) Performing minimization step: 2415. Total energy = 8125.6489 kcal/mol (8122.4916 without restraints) Performing minimization step: 2416. Total energy = 8122.9735 kcal/mol (8119.8167 without restraints) Performing minimization step: 2417. Total energy = 8120.2988 kcal/mol (8117.1429 without restraints) Performing minimization step: 2418. Total energy = 8117.6242 kcal/mol (8114.4690 without restraints) Performing minimization step: 2419. Total energy = 8114.9515 kcal/mol (8111.7971 without restraints) Performing minimization step: 2420. Total energy = 8112.2789 kcal/mol (8109.1252 without restraints) Performing minimization step: 2421. Total energy = 8109.6075 kcal/mol (8106.4546 without restraints) Performing minimization step: 2422. Total energy = 8106.9367 kcal/mol (8103.7846 without restraints) Performing minimization step: 2423. Total energy = 8104.2665 kcal/mol (8101.1151 without restraints) Performing minimization step: 2424. Total energy = 8101.5977 kcal/mol (8098.4471 without restraints) Performing minimization step: 2425. Total energy = 8098.9293 kcal/mol (8095.7794 without restraints) Performing minimization step: 2426. Total energy = 8096.2616 kcal/mol (8093.1126 without restraints) Performing minimization step: 2427. Total energy = 8093.5950 kcal/mol (8090.4466 without restraints) Performing minimization step: 2428. Total energy = 8090.9288 kcal/mol (8087.7812 without restraints) Performing minimization step: 2429. Total energy = 8088.2634 kcal/mol (8085.1164 without restraints) Performing minimization step: 2430. Total energy = 8085.5987 kcal/mol (8082.4526 without restraints) Performing minimization step: 2431. Total energy = 8082.9348 kcal/mol (8079.7894 without restraints) Performing minimization step: 2432. Total energy = 8080.2717 kcal/mol (8077.1272 without restraints) Performing minimization step: 2433. Total energy = 8077.6094 kcal/mol (8074.4655 without restraints) Performing minimization step: 2434. Total energy = 8074.9479 kcal/mol (8071.8048 without restraints) Performing minimization step: 2435. Total energy = 8072.2871 kcal/mol (8069.1447 without restraints) Performing minimization step: 2436. Total energy = 8069.6269 kcal/mol (8066.4853 without restraints) Performing minimization step: 2437. Total energy = 8066.9675 kcal/mol (8063.8267 without restraints) Performing minimization step: 2438. Total energy = 8064.3091 kcal/mol (8061.1692 without restraints) Performing minimization step: 2439. Total energy = 8061.6517 kcal/mol (8058.5123 without restraints) Performing minimization step: 2440. Total energy = 8058.9948 kcal/mol (8055.8562 without restraints) Performing minimization step: 2441. Total energy = 8056.3385 kcal/mol (8053.2006 without restraints) Performing minimization step: 2442. Total energy = 8053.6827 kcal/mol (8050.5455 without restraints) Performing minimization step: 2443. Total energy = 8051.0281 kcal/mol (8047.8917 without restraints) Performing minimization step: 2444. Total energy = 8048.3743 kcal/mol (8045.2387 without restraints) Performing minimization step: 2445. Total energy = 8045.7211 kcal/mol (8042.5862 without restraints) Performing minimization step: 2446. Total energy = 8043.0685 kcal/mol (8039.9344 without restraints) Performing minimization step: 2447. Total energy = 8040.4170 kcal/mol (8037.2837 without restraints) Performing minimization step: 2448. Total energy = 8037.7658 kcal/mol (8034.6332 without restraints) Performing minimization step: 2449. Total energy = 8035.1155 kcal/mol (8031.9836 without restraints) Performing minimization step: 2450. Total energy = 8032.4658 kcal/mol (8029.3347 without restraints) Performing minimization step: 2451. Total energy = 8029.8171 kcal/mol (8026.6867 without restraints) Performing minimization step: 2452. Total energy = 8027.1691 kcal/mol (8024.0395 without restraints) Performing minimization step: 2453. Total energy = 8024.5221 kcal/mol (8021.3932 without restraints) Performing minimization step: 2454. Total energy = 8021.8753 kcal/mol (8018.7471 without restraints) Performing minimization step: 2455. Total energy = 8019.2298 kcal/mol (8016.1023 without restraints) Performing minimization step: 2456. Total energy = 8016.5851 kcal/mol (8013.4584 without restraints) Performing minimization step: 2457. Total energy = 8013.9410 kcal/mol (8010.8151 without restraints) Performing minimization step: 2458. Total energy = 8011.2977 kcal/mol (8008.1726 without restraints) Performing minimization step: 2459. Total energy = 8008.6551 kcal/mol (8005.5307 without restraints) Performing minimization step: 2460. Total energy = 8006.0134 kcal/mol (8002.8897 without restraints) Performing minimization step: 2461. Total energy = 8003.3725 kcal/mol (8000.2496 without restraints) Performing minimization step: 2462. Total energy = 8000.7326 kcal/mol (7997.6104 without restraints) Performing minimization step: 2463. Total energy = 7998.0928 kcal/mol (7994.9713 without restraints) Performing minimization step: 2464. Total energy = 7995.4541 kcal/mol (7992.3333 without restraints) Performing minimization step: 2465. Total energy = 7992.8160 kcal/mol (7989.6961 without restraints) Performing minimization step: 2466. Total energy = 7990.1790 kcal/mol (7987.0597 without restraints) Performing minimization step: 2467. Total energy = 7987.5421 kcal/mol (7984.4235 without restraints) Performing minimization step: 2468. Total energy = 7984.9063 kcal/mol (7981.7885 without restraints) Performing minimization step: 2469. Total energy = 7982.2713 kcal/mol (7979.1542 without restraints) Performing minimization step: 2470. Total energy = 7979.6370 kcal/mol (7976.5207 without restraints) Performing minimization step: 2471. Total energy = 7977.0035 kcal/mol (7973.8879 without restraints) Performing minimization step: 2472. Total energy = 7974.3710 kcal/mol (7971.2562 without restraints) Performing minimization step: 2473. Total energy = 7971.7393 kcal/mol (7968.6252 without restraints) Performing minimization step: 2474. Total energy = 7969.1084 kcal/mol (7965.9951 without restraints) Performing minimization step: 2475. Total energy = 7966.4781 kcal/mol (7963.3655 without restraints) Performing minimization step: 2476. Total energy = 7963.8487 kcal/mol (7960.7368 without restraints) Performing minimization step: 2477. Total energy = 7961.2200 kcal/mol (7958.1088 without restraints) Performing minimization step: 2478. Total energy = 7958.5916 kcal/mol (7955.4812 without restraints) Performing minimization step: 2479. Total energy = 7955.9643 kcal/mol (7952.8546 without restraints) Performing minimization step: 2480. Total energy = 7953.3376 kcal/mol (7950.2287 without restraints) Performing minimization step: 2481. Total energy = 7950.7126 kcal/mol (7947.6044 without restraints) Performing minimization step: 2482. Total energy = 7948.0875 kcal/mol (7944.9801 without restraints) Performing minimization step: 2483. Total energy = 7945.4635 kcal/mol (7942.3568 without restraints) Performing minimization step: 2484. Total energy = 7942.8401 kcal/mol (7939.7341 without restraints) Performing minimization step: 2485. Total energy = 7940.2175 kcal/mol (7937.1122 without restraints) Performing minimization step: 2486. Total energy = 7937.5953 kcal/mol (7934.4908 without restraints) Performing minimization step: 2487. Total energy = 7934.9740 kcal/mol (7931.8702 without restraints) Performing minimization step: 2488. Total energy = 7932.3538 kcal/mol (7929.2507 without restraints) Performing minimization step: 2489. Total energy = 7929.7344 kcal/mol (7926.6321 without restraints) Performing minimization step: 2490. Total energy = 7927.1156 kcal/mol (7924.0140 without restraints) Performing minimization step: 2491. Total energy = 7924.4977 kcal/mol (7921.3967 without restraints) Performing minimization step: 2492. Total energy = 7921.8801 kcal/mol (7918.7799 without restraints) Performing minimization step: 2493. Total energy = 7919.2636 kcal/mol (7916.1642 without restraints) Performing minimization step: 2494. Total energy = 7916.6481 kcal/mol (7913.5496 without restraints) Performing minimization step: 2495. Total energy = 7914.0332 kcal/mol (7910.9354 without restraints) Performing minimization step: 2496. Total energy = 7911.4195 kcal/mol (7908.3223 without restraints) Performing minimization step: 2497. Total energy = 7908.8062 kcal/mol (7905.7098 without restraints) Performing minimization step: 2498. Total energy = 7906.1935 kcal/mol (7903.0978 without restraints) Performing minimization step: 2499. Total energy = 7903.5824 kcal/mol (7900.4875 without restraints) Performing minimization step: 2500. Total energy = 7900.9720 kcal/mol (7897.8779 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 7898.3618 kcal/mol (7895.2683 without restraints) Performing minimization step: 2502. Total energy = 7895.7525 kcal/mol (7892.6597 without restraints) Performing minimization step: 2503. Total energy = 7893.1439 kcal/mol (7890.0519 without restraints) Performing minimization step: 2504. Total energy = 7890.5362 kcal/mol (7887.4450 without restraints) Performing minimization step: 2505. Total energy = 7887.9290 kcal/mol (7884.8384 without restraints) Performing minimization step: 2506. Total energy = 7885.3226 kcal/mol (7882.2327 without restraints) Performing minimization step: 2507. Total energy = 7882.7170 kcal/mol (7879.6279 without restraints) Performing minimization step: 2508. Total energy = 7880.1129 kcal/mol (7877.0245 without restraints) Performing minimization step: 2509. Total energy = 7877.5091 kcal/mol (7874.4215 without restraints) Performing minimization step: 2510. Total energy = 7874.9062 kcal/mol (7871.8193 without restraints) Performing minimization step: 2511. Total energy = 7872.3039 kcal/mol (7869.2178 without restraints) Performing minimization step: 2512. Total energy = 7869.7022 kcal/mol (7866.6168 without restraints) Performing minimization step: 2513. Total energy = 7867.1016 kcal/mol (7864.0169 without restraints) Performing minimization step: 2514. Total energy = 7864.5018 kcal/mol (7861.4179 without restraints) Performing minimization step: 2515. Total energy = 7861.9028 kcal/mol (7858.8197 without restraints) Performing minimization step: 2516. Total energy = 7859.3048 kcal/mol (7856.2222 without restraints) Performing minimization step: 2517. Total energy = 7856.7072 kcal/mol (7853.6256 without restraints) Performing minimization step: 2518. Total energy = 7854.1103 kcal/mol (7851.0292 without restraints) Performing minimization step: 2519. Total energy = 7851.5145 kcal/mol (7848.4341 without restraints) Performing minimization step: 2520. Total energy = 7848.9194 kcal/mol (7845.8398 without restraints) Performing minimization step: 2521. Total energy = 7846.3247 kcal/mol (7843.2459 without restraints) Performing minimization step: 2522. Total energy = 7843.7314 kcal/mol (7840.6533 without restraints) Performing minimization step: 2523. Total energy = 7841.1389 kcal/mol (7838.0616 without restraints) Performing minimization step: 2524. Total energy = 7838.5469 kcal/mol (7835.4703 without restraints) Performing minimization step: 2525. Total energy = 7835.9564 kcal/mol (7832.8805 without restraints) Performing minimization step: 2526. Total energy = 7833.3663 kcal/mol (7830.2911 without restraints) Performing minimization step: 2527. Total energy = 7830.7768 kcal/mol (7827.7023 without restraints) Performing minimization step: 2528. Total energy = 7828.1886 kcal/mol (7825.1149 without restraints) Performing minimization step: 2529. Total energy = 7825.6008 kcal/mol (7822.5278 without restraints) Performing minimization step: 2530. Total energy = 7823.0133 kcal/mol (7819.9410 without restraints) Performing minimization step: 2531. Total energy = 7820.4272 kcal/mol (7817.3557 without restraints) Performing minimization step: 2532. Total energy = 7817.8417 kcal/mol (7814.7709 without restraints) Performing minimization step: 2533. Total energy = 7815.2571 kcal/mol (7812.1870 without restraints) Performing minimization step: 2534. Total energy = 7812.6735 kcal/mol (7809.6041 without restraints) Performing minimization step: 2535. Total energy = 7810.0904 kcal/mol (7807.0217 without restraints) Performing minimization step: 2536. Total energy = 7807.5074 kcal/mol (7804.4395 without restraints) Performing minimization step: 2537. Total energy = 7804.9262 kcal/mol (7801.8590 without restraints) Performing minimization step: 2538. Total energy = 7802.3461 kcal/mol (7799.2796 without restraints) Performing minimization step: 2539. Total energy = 7799.7667 kcal/mol (7796.7010 without restraints) Performing minimization step: 2540. Total energy = 7797.1878 kcal/mol (7794.1227 without restraints) Performing minimization step: 2541. Total energy = 7794.6098 kcal/mol (7791.5455 without restraints) Performing minimization step: 2542. Total energy = 7792.0329 kcal/mol (7788.9693 without restraints) Performing minimization step: 2543. Total energy = 7789.4569 kcal/mol (7786.3940 without restraints) Performing minimization step: 2544. Total energy = 7786.8815 kcal/mol (7783.8194 without restraints) Performing minimization step: 2545. Total energy = 7784.3069 kcal/mol (7781.2457 without restraints) Performing minimization step: 2546. Total energy = 7781.7335 kcal/mol (7778.6728 without restraints) Performing minimization step: 2547. Total energy = 7779.1609 kcal/mol (7776.1009 without restraints) Performing minimization step: 2548. Total energy = 7776.5889 kcal/mol (7773.5297 without restraints) Performing minimization step: 2549. Total energy = 7774.0175 kcal/mol (7770.9591 without restraints) Performing minimization step: 2550. Total energy = 7771.4471 kcal/mol (7768.3893 without restraints) Performing minimization step: 2551. Total energy = 7768.8776 kcal/mol (7765.8205 without restraints) Performing minimization step: 2552. Total energy = 7766.3099 kcal/mol (7763.2543 without restraints) Performing minimization step: 2553. Total energy = 7763.7428 kcal/mol (7760.6872 without restraints) Performing minimization step: 2554. Total energy = 7761.1760 kcal/mol (7758.1210 without restraints) Performing minimization step: 2555. Total energy = 7758.6099 kcal/mol (7755.5558 without restraints) Performing minimization step: 2556. Total energy = 7756.0449 kcal/mol (7752.9916 without restraints) Performing minimization step: 2557. Total energy = 7753.4805 kcal/mol (7750.4279 without restraints) Performing minimization step: 2558. Total energy = 7750.9171 kcal/mol (7747.8652 without restraints) Performing minimization step: 2559. Total energy = 7748.3546 kcal/mol (7745.3034 without restraints) Performing minimization step: 2560. Total energy = 7745.7930 kcal/mol (7742.7425 without restraints) Performing minimization step: 2561. Total energy = 7743.2321 kcal/mol (7740.1823 without restraints) Performing minimization step: 2562. Total energy = 7740.6722 kcal/mol (7737.6232 without restraints) Performing minimization step: 2563. Total energy = 7738.1133 kcal/mol (7735.0650 without restraints) Performing minimization step: 2564. Total energy = 7735.5549 kcal/mol (7732.5074 without restraints) Performing minimization step: 2565. Total energy = 7732.9975 kcal/mol (7729.9507 without restraints) Performing minimization step: 2566. Total energy = 7730.4411 kcal/mol (7727.3950 without restraints) Performing minimization step: 2567. Total energy = 7727.8855 kcal/mol (7724.8401 without restraints) Performing minimization step: 2568. Total energy = 7725.3311 kcal/mol (7722.2865 without restraints) Performing minimization step: 2569. Total energy = 7722.7780 kcal/mol (7719.7341 without restraints) Performing minimization step: 2570. Total energy = 7720.2252 kcal/mol (7717.1820 without restraints) Performing minimization step: 2571. Total energy = 7717.6733 kcal/mol (7714.6309 without restraints) Performing minimization step: 2572. Total energy = 7715.1222 kcal/mol (7712.0805 without restraints) Performing minimization step: 2573. Total energy = 7712.5722 kcal/mol (7709.5312 without restraints) Performing minimization step: 2574. Total energy = 7710.0230 kcal/mol (7706.9828 without restraints) Performing minimization step: 2575. Total energy = 7707.4751 kcal/mol (7704.4355 without restraints) Performing minimization step: 2576. Total energy = 7704.9277 kcal/mol (7701.8888 without restraints) Performing minimization step: 2577. Total energy = 7702.3814 kcal/mol (7699.3433 without restraints) Performing minimization step: 2578. Total energy = 7699.8360 kcal/mol (7696.7987 without restraints) Performing minimization step: 2579. Total energy = 7697.2915 kcal/mol (7694.2549 without restraints) Performing minimization step: 2580. Total energy = 7694.7477 kcal/mol (7691.7118 without restraints) Performing minimization step: 2581. Total energy = 7692.2049 kcal/mol (7689.1697 without restraints) Performing minimization step: 2582. Total energy = 7689.6630 kcal/mol (7686.6285 without restraints) Performing minimization step: 2583. Total energy = 7687.1219 kcal/mol (7684.0882 without restraints) Performing minimization step: 2584. Total energy = 7684.5821 kcal/mol (7681.5491 without restraints) Performing minimization step: 2585. Total energy = 7682.0429 kcal/mol (7679.0106 without restraints) Performing minimization step: 2586. Total energy = 7679.5049 kcal/mol (7676.4733 without restraints) Performing minimization step: 2587. Total energy = 7676.9677 kcal/mol (7673.9369 without restraints) Performing minimization step: 2588. Total energy = 7674.4316 kcal/mol (7671.4015 without restraints) Performing minimization step: 2589. Total energy = 7671.8966 kcal/mol (7668.8672 without restraints) Performing minimization step: 2590. Total energy = 7669.3621 kcal/mol (7666.3334 without restraints) Performing minimization step: 2591. Total energy = 7666.8285 kcal/mol (7663.8006 without restraints) Performing minimization step: 2592. Total energy = 7664.2959 kcal/mol (7661.2687 without restraints) Performing minimization step: 2593. Total energy = 7661.7642 kcal/mol (7658.7378 without restraints) Performing minimization step: 2594. Total energy = 7659.2340 kcal/mol (7656.2084 without restraints) Performing minimization step: 2595. Total energy = 7656.7043 kcal/mol (7653.6793 without restraints) Performing minimization step: 2596. Total energy = 7654.1752 kcal/mol (7651.1509 without restraints) Performing minimization step: 2597. Total energy = 7651.6475 kcal/mol (7648.6239 without restraints) Performing minimization step: 2598. Total energy = 7649.1207 kcal/mol (7646.0979 without restraints) Performing minimization step: 2599. Total energy = 7646.5948 kcal/mol (7643.5727 without restraints) Performing minimization step: 2600. Total energy = 7644.0699 kcal/mol (7641.0485 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 7641.5461 kcal/mol (7638.5255 without restraints) Performing minimization step: 2602. Total energy = 7639.0228 kcal/mol (7636.0029 without restraints) Performing minimization step: 2603. Total energy = 7636.5008 kcal/mol (7633.4816 without restraints) Performing minimization step: 2604. Total energy = 7633.9797 kcal/mol (7630.9613 without restraints) Performing minimization step: 2605. Total energy = 7631.4598 kcal/mol (7628.4421 without restraints) Performing minimization step: 2606. Total energy = 7628.9409 kcal/mol (7625.9239 without restraints) Performing minimization step: 2607. Total energy = 7626.4229 kcal/mol (7623.4066 without restraints) Performing minimization step: 2608. Total energy = 7623.9058 kcal/mol (7620.8903 without restraints) Performing minimization step: 2609. Total energy = 7621.3897 kcal/mol (7618.3749 without restraints) Performing minimization step: 2610. Total energy = 7618.8745 kcal/mol (7615.8605 without restraints) Performing minimization step: 2611. Total energy = 7616.3604 kcal/mol (7613.3471 without restraints) Performing minimization step: 2612. Total energy = 7613.8473 kcal/mol (7610.8347 without restraints) Performing minimization step: 2613. Total energy = 7611.3355 kcal/mol (7608.3236 without restraints) Performing minimization step: 2614. Total energy = 7608.8244 kcal/mol (7605.8132 without restraints) Performing minimization step: 2615. Total energy = 7606.3142 kcal/mol (7603.3038 without restraints) Performing minimization step: 2616. Total energy = 7603.8050 kcal/mol (7600.7953 without restraints) Performing minimization step: 2617. Total energy = 7601.2971 kcal/mol (7598.2882 without restraints) Performing minimization step: 2618. Total energy = 7598.7902 kcal/mol (7595.7819 without restraints) Performing minimization step: 2619. Total energy = 7596.2841 kcal/mol (7593.2767 without restraints) Performing minimization step: 2620. Total energy = 7593.7794 kcal/mol (7590.7726 without restraints) Performing minimization step: 2621. Total energy = 7591.2750 kcal/mol (7588.2690 without restraints) Performing minimization step: 2622. Total energy = 7588.7719 kcal/mol (7585.7666 without restraints) Performing minimization step: 2623. Total energy = 7586.2700 kcal/mol (7583.2653 without restraints) Performing minimization step: 2624. Total energy = 7583.7691 kcal/mol (7580.7652 without restraints) Performing minimization step: 2625. Total energy = 7581.2691 kcal/mol (7578.2660 without restraints) Performing minimization step: 2626. Total energy = 7578.7702 kcal/mol (7575.7678 without restraints) Performing minimization step: 2627. Total energy = 7576.2718 kcal/mol (7573.2702 without restraints) Performing minimization step: 2628. Total energy = 7573.7750 kcal/mol (7570.7741 without restraints) Performing minimization step: 2629. Total energy = 7571.2793 kcal/mol (7568.2790 without restraints) Performing minimization step: 2630. Total energy = 7568.7844 kcal/mol (7565.7850 without restraints) Performing minimization step: 2631. Total energy = 7566.2909 kcal/mol (7563.2922 without restraints) Performing minimization step: 2632. Total energy = 7563.7978 kcal/mol (7560.7998 without restraints) Performing minimization step: 2633. Total energy = 7561.3062 kcal/mol (7558.3089 without restraints) Performing minimization step: 2634. Total energy = 7558.8157 kcal/mol (7555.8192 without restraints) Performing minimization step: 2635. Total energy = 7556.3262 kcal/mol (7553.3304 without restraints) Performing minimization step: 2636. Total energy = 7553.8377 kcal/mol (7550.8426 without restraints) Performing minimization step: 2637. Total energy = 7551.3505 kcal/mol (7548.3562 without restraints) Performing minimization step: 2638. Total energy = 7548.8643 kcal/mol (7545.8707 without restraints) Performing minimization step: 2639. Total energy = 7546.3790 kcal/mol (7543.3862 without restraints) Performing minimization step: 2640. Total energy = 7543.8950 kcal/mol (7540.9029 without restraints) Performing minimization step: 2641. Total energy = 7541.4119 kcal/mol (7538.4205 without restraints) Performing minimization step: 2642. Total energy = 7538.9300 kcal/mol (7535.9394 without restraints) Performing minimization step: 2643. Total energy = 7536.4491 kcal/mol (7533.4591 without restraints) Performing minimization step: 2644. Total energy = 7533.9694 kcal/mol (7530.9802 without restraints) Performing minimization step: 2645. Total energy = 7531.4907 kcal/mol (7528.5022 without restraints) Performing minimization step: 2646. Total energy = 7529.0129 kcal/mol (7526.0251 without restraints) Performing minimization step: 2647. Total energy = 7526.5362 kcal/mol (7523.5492 without restraints) Performing minimization step: 2648. Total energy = 7524.0608 kcal/mol (7521.0746 without restraints) Performing minimization step: 2649. Total energy = 7521.5862 kcal/mol (7518.6007 without restraints) Performing minimization step: 2650. Total energy = 7519.1130 kcal/mol (7516.1282 without restraints) Performing minimization step: 2651. Total energy = 7516.6408 kcal/mol (7513.6567 without restraints) Performing minimization step: 2652. Total energy = 7514.1695 kcal/mol (7511.1862 without restraints) Performing minimization step: 2653. Total energy = 7511.6998 kcal/mol (7508.7172 without restraints) Performing minimization step: 2654. Total energy = 7509.2311 kcal/mol (7506.2493 without restraints) Performing minimization step: 2655. Total energy = 7506.7631 kcal/mol (7503.7819 without restraints) Performing minimization step: 2656. Total energy = 7504.2964 kcal/mol (7501.3160 without restraints) Performing minimization step: 2657. Total energy = 7501.8308 kcal/mol (7498.8511 without restraints) Performing minimization step: 2658. Total energy = 7499.3662 kcal/mol (7496.3873 without restraints) Performing minimization step: 2659. Total energy = 7496.9031 kcal/mol (7493.9249 without restraints) Performing minimization step: 2660. Total energy = 7494.4410 kcal/mol (7491.4636 without restraints) Performing minimization step: 2661. Total energy = 7491.9803 kcal/mol (7489.0035 without restraints) Performing minimization step: 2662. Total energy = 7489.5204 kcal/mol (7486.5445 without restraints) Performing minimization step: 2663. Total energy = 7487.0620 kcal/mol (7484.0868 without restraints) Performing minimization step: 2664. Total energy = 7484.6044 kcal/mol (7481.6299 without restraints) Performing minimization step: 2665. Total energy = 7482.1481 kcal/mol (7479.1743 without restraints) Performing minimization step: 2666. Total energy = 7479.6929 kcal/mol (7476.7200 without restraints) Performing minimization step: 2667. Total energy = 7477.2389 kcal/mol (7474.2666 without restraints) Performing minimization step: 2668. Total energy = 7474.7860 kcal/mol (7471.8145 without restraints) Performing minimization step: 2669. Total energy = 7472.3344 kcal/mol (7469.3636 without restraints) Performing minimization step: 2670. Total energy = 7469.8840 kcal/mol (7466.9138 without restraints) Performing minimization step: 2671. Total energy = 7467.4342 kcal/mol (7464.4649 without restraints) Performing minimization step: 2672. Total energy = 7464.9859 kcal/mol (7462.0173 without restraints) Performing minimization step: 2673. Total energy = 7462.5393 kcal/mol (7459.5714 without restraints) Performing minimization step: 2674. Total energy = 7460.0934 kcal/mol (7457.1263 without restraints) Performing minimization step: 2675. Total energy = 7457.6489 kcal/mol (7454.6825 without restraints) Performing minimization step: 2676. Total energy = 7455.2051 kcal/mol (7452.2395 without restraints) Performing minimization step: 2677. Total energy = 7452.7627 kcal/mol (7449.7977 without restraints) Performing minimization step: 2678. Total energy = 7450.3218 kcal/mol (7447.3576 without restraints) Performing minimization step: 2679. Total energy = 7447.8822 kcal/mol (7444.9188 without restraints) Performing minimization step: 2680. Total energy = 7445.4431 kcal/mol (7442.4804 without restraints) Performing minimization step: 2681. Total energy = 7443.0058 kcal/mol (7440.0441 without restraints) Performing minimization step: 2682. Total energy = 7440.5695 kcal/mol (7437.6082 without restraints) Performing minimization step: 2683. Total energy = 7438.1343 kcal/mol (7435.1738 without restraints) Performing minimization step: 2684. Total energy = 7435.7002 kcal/mol (7432.7403 without restraints) Performing minimization step: 2685. Total energy = 7433.2670 kcal/mol (7430.3080 without restraints) Performing minimization step: 2686. Total energy = 7430.8354 kcal/mol (7427.8773 without restraints) Performing minimization step: 2687. Total energy = 7428.4056 kcal/mol (7425.4481 without restraints) Performing minimization step: 2688. Total energy = 7425.9764 kcal/mol (7423.0197 without restraints) Performing minimization step: 2689. Total energy = 7423.5489 kcal/mol (7420.5928 without restraints) Performing minimization step: 2690. Total energy = 7421.1224 kcal/mol (7418.1671 without restraints) Performing minimization step: 2691. Total energy = 7418.6969 kcal/mol (7415.7424 without restraints) Performing minimization step: 2692. Total energy = 7416.2727 kcal/mol (7413.3189 without restraints) Performing minimization step: 2693. Total energy = 7413.8496 kcal/mol (7410.8966 without restraints) Performing minimization step: 2694. Total energy = 7411.4281 kcal/mol (7408.4758 without restraints) Performing minimization step: 2695. Total energy = 7409.0080 kcal/mol (7406.0565 without restraints) Performing minimization step: 2696. Total energy = 7406.5887 kcal/mol (7403.6379 without restraints) Performing minimization step: 2697. Total energy = 7404.1710 kcal/mol (7401.2208 without restraints) Performing minimization step: 2698. Total energy = 7401.7538 kcal/mol (7398.8043 without restraints) Performing minimization step: 2699. Total energy = 7399.3385 kcal/mol (7396.3900 without restraints) Performing minimization step: 2700. Total energy = 7396.9243 kcal/mol (7393.9765 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 7394.5113 kcal/mol (7391.5643 without restraints) Performing minimization step: 2702. Total energy = 7392.0999 kcal/mol (7389.1535 without restraints) Performing minimization step: 2703. Total energy = 7389.6894 kcal/mol (7386.7437 without restraints) Performing minimization step: 2704. Total energy = 7387.2804 kcal/mol (7384.3356 without restraints) Performing minimization step: 2705. Total energy = 7384.8725 kcal/mol (7381.9283 without restraints) Performing minimization step: 2706. Total energy = 7382.4658 kcal/mol (7379.5224 without restraints) Performing minimization step: 2707. Total energy = 7380.0605 kcal/mol (7377.1179 without restraints) Performing minimization step: 2708. Total energy = 7377.6564 kcal/mol (7374.7146 without restraints) Performing minimization step: 2709. Total energy = 7375.2534 kcal/mol (7372.3122 without restraints) Performing minimization step: 2710. Total energy = 7372.8519 kcal/mol (7369.9114 without restraints) Performing minimization step: 2711. Total energy = 7370.4515 kcal/mol (7367.5118 without restraints) Performing minimization step: 2712. Total energy = 7368.0531 kcal/mol (7365.1142 without restraints) Performing minimization step: 2713. Total energy = 7365.6554 kcal/mol (7362.7173 without restraints) Performing minimization step: 2714. Total energy = 7363.2591 kcal/mol (7360.3216 without restraints) Performing minimization step: 2715. Total energy = 7360.8637 kcal/mol (7357.9268 without restraints) Performing minimization step: 2716. Total energy = 7358.4700 kcal/mol (7355.5341 without restraints) Performing minimization step: 2717. Total energy = 7356.0774 kcal/mol (7353.1422 without restraints) Performing minimization step: 2718. Total energy = 7353.6859 kcal/mol (7350.7514 without restraints) Performing minimization step: 2719. Total energy = 7351.2959 kcal/mol (7348.3622 without restraints) Performing minimization step: 2720. Total energy = 7348.9077 kcal/mol (7345.9748 without restraints) Performing minimization step: 2721. Total energy = 7346.5204 kcal/mol (7343.5882 without restraints) Performing minimization step: 2722. Total energy = 7344.1343 kcal/mol (7341.2029 without restraints) Performing minimization step: 2723. Total energy = 7341.7496 kcal/mol (7338.8189 without restraints) Performing minimization step: 2724. Total energy = 7339.3662 kcal/mol (7336.4362 without restraints) Performing minimization step: 2725. Total energy = 7336.9841 kcal/mol (7334.0549 without restraints) Performing minimization step: 2726. Total energy = 7334.6035 kcal/mol (7331.6750 without restraints) Performing minimization step: 2727. Total energy = 7332.2240 kcal/mol (7329.2963 without restraints) Performing minimization step: 2728. Total energy = 7329.8462 kcal/mol (7326.9192 without restraints) Performing minimization step: 2729. Total energy = 7327.4694 kcal/mol (7324.5432 without restraints) Performing minimization step: 2730. Total energy = 7325.0942 kcal/mol (7322.1688 without restraints) Performing minimization step: 2731. Total energy = 7322.7203 kcal/mol (7319.7956 without restraints) Performing minimization step: 2732. Total energy = 7320.3476 kcal/mol (7317.4236 without restraints) Performing minimization step: 2733. Total energy = 7317.9760 kcal/mol (7315.0528 without restraints) Performing minimization step: 2734. Total energy = 7315.6059 kcal/mol (7312.6835 without restraints) Performing minimization step: 2735. Total energy = 7313.2374 kcal/mol (7310.3157 without restraints) Performing minimization step: 2736. Total energy = 7310.8699 kcal/mol (7307.9489 without restraints) Performing minimization step: 2737. Total energy = 7308.5038 kcal/mol (7305.5836 without restraints) Performing minimization step: 2738. Total energy = 7306.1392 kcal/mol (7303.2197 without restraints) Performing minimization step: 2739. Total energy = 7303.7763 kcal/mol (7300.8576 without restraints) Performing minimization step: 2740. Total energy = 7301.4147 kcal/mol (7298.4967 without restraints) Performing minimization step: 2741. Total energy = 7299.0540 kcal/mol (7296.1369 without restraints) Performing minimization step: 2742. Total energy = 7296.6954 kcal/mol (7293.7789 without restraints) Performing minimization step: 2743. Total energy = 7294.3376 kcal/mol (7291.4219 without restraints) Performing minimization step: 2744. Total energy = 7291.9811 kcal/mol (7289.0662 without restraints) Performing minimization step: 2745. Total energy = 7289.6265 kcal/mol (7286.7124 without restraints) Performing minimization step: 2746. Total energy = 7287.2733 kcal/mol (7284.3599 without restraints) Performing minimization step: 2747. Total energy = 7284.9211 kcal/mol (7282.0084 without restraints) Performing minimization step: 2748. Total energy = 7282.5707 kcal/mol (7279.6588 without restraints) Performing minimization step: 2749. Total energy = 7280.2214 kcal/mol (7277.3103 without restraints) Performing minimization step: 2750. Total energy = 7277.8736 kcal/mol (7274.9632 without restraints) Performing minimization step: 2751. Total energy = 7275.5273 kcal/mol (7272.6179 without restraints) Performing minimization step: 2752. Total energy = 7273.1820 kcal/mol (7270.2731 without restraints) Performing minimization step: 2753. Total energy = 7270.8383 kcal/mol (7267.9301 without restraints) Performing minimization step: 2754. Total energy = 7268.4956 kcal/mol (7265.5883 without restraints) Performing minimization step: 2755. Total energy = 7266.1546 kcal/mol (7263.2479 without restraints) Performing minimization step: 2756. Total energy = 7263.8148 kcal/mol (7260.9088 without restraints) Performing minimization step: 2757. Total energy = 7261.4762 kcal/mol (7258.5710 without restraints) Performing minimization step: 2758. Total energy = 7259.1392 kcal/mol (7256.2348 without restraints) Performing minimization step: 2759. Total energy = 7256.8044 kcal/mol (7253.9008 without restraints) Performing minimization step: 2760. Total energy = 7254.4704 kcal/mol (7251.5675 without restraints) Performing minimization step: 2761. Total energy = 7252.1381 kcal/mol (7249.2362 without restraints) Performing minimization step: 2762. Total energy = 7249.8072 kcal/mol (7246.9059 without restraints) Performing minimization step: 2763. Total energy = 7247.4774 kcal/mol (7244.5768 without restraints) Performing minimization step: 2764. Total energy = 7245.1489 kcal/mol (7242.2491 without restraints) Performing minimization step: 2765. Total energy = 7242.8222 kcal/mol (7239.9231 without restraints) Performing minimization step: 2766. Total energy = 7240.4971 kcal/mol (7237.5988 without restraints) Performing minimization step: 2767. Total energy = 7238.1733 kcal/mol (7235.2757 without restraints) Performing minimization step: 2768. Total energy = 7235.8509 kcal/mol (7232.9541 without restraints) Performing minimization step: 2769. Total energy = 7233.5295 kcal/mol (7230.6335 without restraints) Performing minimization step: 2770. Total energy = 7231.2097 kcal/mol (7228.3144 without restraints) Performing minimization step: 2771. Total energy = 7228.8916 kcal/mol (7225.9970 without restraints) Performing minimization step: 2772. Total energy = 7226.5747 kcal/mol (7223.6810 without restraints) Performing minimization step: 2773. Total energy = 7224.2593 kcal/mol (7221.3663 without restraints) Performing minimization step: 2774. Total energy = 7221.9451 kcal/mol (7219.0529 without restraints) Performing minimization step: 2775. Total energy = 7219.6326 kcal/mol (7216.7411 without restraints) Performing minimization step: 2776. Total energy = 7217.3222 kcal/mol (7214.4315 without restraints) Performing minimization step: 2777. Total energy = 7215.0131 kcal/mol (7212.1231 without restraints) Performing minimization step: 2778. Total energy = 7212.7051 kcal/mol (7209.8159 without restraints) Performing minimization step: 2779. Total energy = 7210.3982 kcal/mol (7207.5098 without restraints) Performing minimization step: 2780. Total energy = 7208.0933 kcal/mol (7205.2056 without restraints) Performing minimization step: 2781. Total energy = 7205.7898 kcal/mol (7202.9028 without restraints) Performing minimization step: 2782. Total energy = 7203.4877 kcal/mol (7200.6015 without restraints) Performing minimization step: 2783. Total energy = 7201.1867 kcal/mol (7198.3014 without restraints) Performing minimization step: 2784. Total energy = 7198.8873 kcal/mol (7196.0027 without restraints) Performing minimization step: 2785. Total energy = 7196.5895 kcal/mol (7193.7056 without restraints) Performing minimization step: 2786. Total energy = 7194.2929 kcal/mol (7191.4097 without restraints) Performing minimization step: 2787. Total energy = 7191.9980 kcal/mol (7189.1156 without restraints) Performing minimization step: 2788. Total energy = 7189.7047 kcal/mol (7186.8230 without restraints) Performing minimization step: 2789. Total energy = 7187.4127 kcal/mol (7184.5318 without restraints) Performing minimization step: 2790. Total energy = 7185.1223 kcal/mol (7182.2422 without restraints) Performing minimization step: 2791. Total energy = 7182.8334 kcal/mol (7179.9540 without restraints) Performing minimization step: 2792. Total energy = 7180.5459 kcal/mol (7177.6673 without restraints) Performing minimization step: 2793. Total energy = 7178.2603 kcal/mol (7175.3825 without restraints) Performing minimization step: 2794. Total energy = 7175.9756 kcal/mol (7173.0986 without restraints) Performing minimization step: 2795. Total energy = 7173.6928 kcal/mol (7170.8165 without restraints) Performing minimization step: 2796. Total energy = 7171.4113 kcal/mol (7168.5358 without restraints) Performing minimization step: 2797. Total energy = 7169.1313 kcal/mol (7166.2566 without restraints) Performing minimization step: 2798. Total energy = 7166.8532 kcal/mol (7163.9793 without restraints) Performing minimization step: 2799. Total energy = 7164.5764 kcal/mol (7161.7031 without restraints) Performing minimization step: 2800. Total energy = 7162.3011 kcal/mol (7159.4287 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 7160.0273 kcal/mol (7157.1556 without restraints) Performing minimization step: 2802. Total energy = 7157.7547 kcal/mol (7154.8838 without restraints) Performing minimization step: 2803. Total energy = 7155.4839 kcal/mol (7152.6137 without restraints) Performing minimization step: 2804. Total energy = 7153.2145 kcal/mol (7150.3451 without restraints) Performing minimization step: 2805. Total energy = 7150.9469 kcal/mol (7148.0783 without restraints) Performing minimization step: 2806. Total energy = 7148.6811 kcal/mol (7145.8132 without restraints) Performing minimization step: 2807. Total energy = 7146.4163 kcal/mol (7143.5490 without restraints) Performing minimization step: 2808. Total energy = 7144.1527 kcal/mol (7141.2863 without restraints) Performing minimization step: 2809. Total energy = 7141.8910 kcal/mol (7139.0254 without restraints) Performing minimization step: 2810. Total energy = 7139.6308 kcal/mol (7136.7660 without restraints) Performing minimization step: 2811. Total energy = 7137.3725 kcal/mol (7134.5085 without restraints) Performing minimization step: 2812. Total energy = 7135.1154 kcal/mol (7132.2522 without restraints) Performing minimization step: 2813. Total energy = 7132.8597 kcal/mol (7129.9971 without restraints) Performing minimization step: 2814. Total energy = 7130.6059 kcal/mol (7127.7441 without restraints) Performing minimization step: 2815. Total energy = 7128.3534 kcal/mol (7125.4925 without restraints) Performing minimization step: 2816. Total energy = 7126.1030 kcal/mol (7123.2428 without restraints) Performing minimization step: 2817. Total energy = 7123.8542 kcal/mol (7120.9947 without restraints) Performing minimization step: 2818. Total energy = 7121.6063 kcal/mol (7118.7476 without restraints) Performing minimization step: 2819. Total energy = 7119.3599 kcal/mol (7116.5020 without restraints) Performing minimization step: 2820. Total energy = 7117.1151 kcal/mol (7114.2580 without restraints) Performing minimization step: 2821. Total energy = 7114.8720 kcal/mol (7112.0156 without restraints) Performing minimization step: 2822. Total energy = 7112.6302 kcal/mol (7109.7746 without restraints) Performing minimization step: 2823. Total energy = 7110.3902 kcal/mol (7107.5354 without restraints) Performing minimization step: 2824. Total energy = 7108.1523 kcal/mol (7105.2983 without restraints) Performing minimization step: 2825. Total energy = 7105.9157 kcal/mol (7103.0624 without restraints) Performing minimization step: 2826. Total energy = 7103.6802 kcal/mol (7100.8276 without restraints) Performing minimization step: 2827. Total energy = 7101.4465 kcal/mol (7098.5947 without restraints) Performing minimization step: 2828. Total energy = 7099.2142 kcal/mol (7096.3632 without restraints) Performing minimization step: 2829. Total energy = 7096.9836 kcal/mol (7094.1333 without restraints) Performing minimization step: 2830. Total energy = 7094.7546 kcal/mol (7091.9053 without restraints) Performing minimization step: 2831. Total energy = 7092.5271 kcal/mol (7089.6784 without restraints) Performing minimization step: 2832. Total energy = 7090.3015 kcal/mol (7087.4536 without restraints) Performing minimization step: 2833. Total energy = 7088.0772 kcal/mol (7085.2300 without restraints) Performing minimization step: 2834. Total energy = 7085.8542 kcal/mol (7083.0077 without restraints) Performing minimization step: 2835. Total energy = 7083.6329 kcal/mol (7080.7873 without restraints) Performing minimization step: 2836. Total energy = 7081.4131 kcal/mol (7078.5684 without restraints) Performing minimization step: 2837. Total energy = 7079.1949 kcal/mol (7076.3508 without restraints) Performing minimization step: 2838. Total energy = 7076.9782 kcal/mol (7074.1348 without restraints) Performing minimization step: 2839. Total energy = 7074.7631 kcal/mol (7071.9205 without restraints) Performing minimization step: 2840. Total energy = 7072.5495 kcal/mol (7069.7078 without restraints) Performing minimization step: 2841. Total energy = 7070.3379 kcal/mol (7067.4970 without restraints) Performing minimization step: 2842. Total energy = 7068.1271 kcal/mol (7065.2869 without restraints) Performing minimization step: 2843. Total energy = 7065.9183 kcal/mol (7063.0789 without restraints) Performing minimization step: 2844. Total energy = 7063.7111 kcal/mol (7060.8724 without restraints) Performing minimization step: 2845. Total energy = 7061.5056 kcal/mol (7058.6677 without restraints) Performing minimization step: 2846. Total energy = 7059.3016 kcal/mol (7056.4644 without restraints) Performing minimization step: 2847. Total energy = 7057.0996 kcal/mol (7054.2634 without restraints) Performing minimization step: 2848. Total energy = 7054.8993 kcal/mol (7052.0637 without restraints) Performing minimization step: 2849. Total energy = 7052.7000 kcal/mol (7049.8652 without restraints) Performing minimization step: 2850. Total energy = 7050.5026 kcal/mol (7047.6685 without restraints) Performing minimization step: 2851. Total energy = 7048.3066 kcal/mol (7045.4733 without restraints) Performing minimization step: 2852. Total energy = 7046.1125 kcal/mol (7043.2800 without restraints) Performing minimization step: 2853. Total energy = 7043.9196 kcal/mol (7041.0879 without restraints) Performing minimization step: 2854. Total energy = 7041.7286 kcal/mol (7038.8976 without restraints) Performing minimization step: 2855. Total energy = 7039.5386 kcal/mol (7036.7084 without restraints) Performing minimization step: 2856. Total energy = 7037.3506 kcal/mol (7034.5212 without restraints) Performing minimization step: 2857. Total energy = 7035.1643 kcal/mol (7032.3356 without restraints) Performing minimization step: 2858. Total energy = 7032.9793 kcal/mol (7030.1513 without restraints) Performing minimization step: 2859. Total energy = 7030.7957 kcal/mol (7027.9684 without restraints) Performing minimization step: 2860. Total energy = 7028.6144 kcal/mol (7025.7880 without restraints) Performing minimization step: 2861. Total energy = 7026.4345 kcal/mol (7023.6089 without restraints) Performing minimization step: 2862. Total energy = 7024.2561 kcal/mol (7021.4313 without restraints) Performing minimization step: 2863. Total energy = 7022.0792 kcal/mol (7019.2552 without restraints) Performing minimization step: 2864. Total energy = 7019.9038 kcal/mol (7017.0805 without restraints) Performing minimization step: 2865. Total energy = 7017.7307 kcal/mol (7014.9082 without restraints) Performing minimization step: 2866. Total energy = 7015.5587 kcal/mol (7012.7370 without restraints) Performing minimization step: 2867. Total energy = 7013.3884 kcal/mol (7010.5674 without restraints) Performing minimization step: 2868. Total energy = 7011.2196 kcal/mol (7008.3995 without restraints) Performing minimization step: 2869. Total energy = 7009.0525 kcal/mol (7006.2331 without restraints) Performing minimization step: 2870. Total energy = 7006.8870 kcal/mol (7004.0684 without restraints) Performing minimization step: 2871. Total energy = 7004.7231 kcal/mol (7001.9053 without restraints) Performing minimization step: 2872. Total energy = 7002.5607 kcal/mol (6999.7437 without restraints) Performing minimization step: 2873. Total energy = 7000.4006 kcal/mol (6997.5844 without restraints) Performing minimization step: 2874. Total energy = 6998.2415 kcal/mol (6995.4258 without restraints) Performing minimization step: 2875. Total energy = 6996.0840 kcal/mol (6993.2692 without restraints) Performing minimization step: 2876. Total energy = 6993.9285 kcal/mol (6991.1146 without restraints) Performing minimization step: 2877. Total energy = 6991.7743 kcal/mol (6988.9611 without restraints) Performing minimization step: 2878. Total energy = 6989.6218 kcal/mol (6986.8094 without restraints) Performing minimization step: 2879. Total energy = 6987.4711 kcal/mol (6984.6595 without restraints) Performing minimization step: 2880. Total energy = 6985.3219 kcal/mol (6982.5110 without restraints) Performing minimization step: 2881. Total energy = 6983.1742 kcal/mol (6980.3642 without restraints) Performing minimization step: 2882. Total energy = 6981.0283 kcal/mol (6978.2190 without restraints) Performing minimization step: 2883. Total energy = 6978.8842 kcal/mol (6976.0756 without restraints) Performing minimization step: 2884. Total energy = 6976.7416 kcal/mol (6973.9338 without restraints) Performing minimization step: 2885. Total energy = 6974.6005 kcal/mol (6971.7934 without restraints) Performing minimization step: 2886. Total energy = 6972.4611 kcal/mol (6969.6549 without restraints) Performing minimization step: 2887. Total energy = 6970.3236 kcal/mol (6967.5181 without restraints) Performing minimization step: 2888. Total energy = 6968.1872 kcal/mol (6965.3825 without restraints) Performing minimization step: 2889. Total energy = 6966.0531 kcal/mol (6963.2492 without restraints) Performing minimization step: 2890. Total energy = 6963.9202 kcal/mol (6961.1171 without restraints) Performing minimization step: 2891. Total energy = 6961.7894 kcal/mol (6958.9870 without restraints) Performing minimization step: 2892. Total energy = 6959.6598 kcal/mol (6956.8582 without restraints) Performing minimization step: 2893. Total energy = 6957.5319 kcal/mol (6954.7310 without restraints) Performing minimization step: 2894. Total energy = 6955.4055 kcal/mol (6952.6055 without restraints) Performing minimization step: 2895. Total energy = 6953.2812 kcal/mol (6950.4818 without restraints) Performing minimization step: 2896. Total energy = 6951.1580 kcal/mol (6948.3596 without restraints) Performing minimization step: 2897. Total energy = 6949.0368 kcal/mol (6946.2391 without restraints) Performing minimization step: 2898. Total energy = 6946.9173 kcal/mol (6944.1204 without restraints) Performing minimization step: 2899. Total energy = 6944.7990 kcal/mol (6942.0030 without restraints) Performing minimization step: 2900. Total energy = 6942.6831 kcal/mol (6939.8877 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 6940.5682 kcal/mol (6937.7736 without restraints) Performing minimization step: 2902. Total energy = 6938.4551 kcal/mol (6935.6613 without restraints) Performing minimization step: 2903. Total energy = 6936.3438 kcal/mol (6933.5508 without restraints) Performing minimization step: 2904. Total energy = 6934.2338 kcal/mol (6931.4416 without restraints) Performing minimization step: 2905. Total energy = 6932.1264 kcal/mol (6929.3349 without restraints) Performing minimization step: 2906. Total energy = 6930.0199 kcal/mol (6927.2292 without restraints) Performing minimization step: 2907. Total energy = 6927.9154 kcal/mol (6925.1255 without restraints) Performing minimization step: 2908. Total energy = 6925.8124 kcal/mol (6923.0232 without restraints) Performing minimization step: 2909. Total energy = 6923.7106 kcal/mol (6920.9222 without restraints) Performing minimization step: 2910. Total energy = 6921.6108 kcal/mol (6918.8232 without restraints) Performing minimization step: 2911. Total energy = 6919.5127 kcal/mol (6916.7260 without restraints) Performing minimization step: 2912. Total energy = 6917.4165 kcal/mol (6914.6304 without restraints) Performing minimization step: 2913. Total energy = 6915.3218 kcal/mol (6912.5367 without restraints) Performing minimization step: 2914. Total energy = 6913.2287 kcal/mol (6910.4442 without restraints) Performing minimization step: 2915. Total energy = 6911.1372 kcal/mol (6908.3535 without restraints) Performing minimization step: 2916. Total energy = 6909.0474 kcal/mol (6906.2645 without restraints) Performing minimization step: 2917. Total energy = 6906.9592 kcal/mol (6904.1770 without restraints) Performing minimization step: 2918. Total energy = 6904.8729 kcal/mol (6902.0914 without restraints) Performing minimization step: 2919. Total energy = 6902.7882 kcal/mol (6900.0076 without restraints) Performing minimization step: 2920. Total energy = 6900.7051 kcal/mol (6897.9253 without restraints) Performing minimization step: 2921. Total energy = 6898.6236 kcal/mol (6895.8447 without restraints) Performing minimization step: 2922. Total energy = 6896.5439 kcal/mol (6893.7657 without restraints) Performing minimization step: 2923. Total energy = 6894.4655 kcal/mol (6891.6880 without restraints) Performing minimization step: 2924. Total energy = 6892.3885 kcal/mol (6889.6118 without restraints) Performing minimization step: 2925. Total energy = 6890.3140 kcal/mol (6887.5380 without restraints) Performing minimization step: 2926. Total energy = 6888.2410 kcal/mol (6885.4660 without restraints) Performing minimization step: 2927. Total energy = 6886.1693 kcal/mol (6883.3949 without restraints) Performing minimization step: 2928. Total energy = 6884.0994 kcal/mol (6881.3258 without restraints) Performing minimization step: 2929. Total energy = 6882.0312 kcal/mol (6879.2584 without restraints) Performing minimization step: 2930. Total energy = 6879.9645 kcal/mol (6877.1924 without restraints) Performing minimization step: 2931. Total energy = 6877.8998 kcal/mol (6875.1287 without restraints) Performing minimization step: 2932. Total energy = 6875.8365 kcal/mol (6873.0660 without restraints) Performing minimization step: 2933. Total energy = 6873.7749 kcal/mol (6871.0052 without restraints) Performing minimization step: 2934. Total energy = 6871.7154 kcal/mol (6868.9465 without restraints) Performing minimization step: 2935. Total energy = 6869.6571 kcal/mol (6866.8889 without restraints) Performing minimization step: 2936. Total energy = 6867.6005 kcal/mol (6864.8331 without restraints) Performing minimization step: 2937. Total energy = 6865.5458 kcal/mol (6862.7792 without restraints) Performing minimization step: 2938. Total energy = 6863.4925 kcal/mol (6860.7266 without restraints) Performing minimization step: 2939. Total energy = 6861.4410 kcal/mol (6858.6760 without restraints) Performing minimization step: 2940. Total energy = 6859.3912 kcal/mol (6856.6269 without restraints) Performing minimization step: 2941. Total energy = 6857.3429 kcal/mol (6854.5794 without restraints) Performing minimization step: 2942. Total energy = 6855.2966 kcal/mol (6852.5340 without restraints) Performing minimization step: 2943. Total energy = 6853.2518 kcal/mol (6850.4899 without restraints) Performing minimization step: 2944. Total energy = 6851.2088 kcal/mol (6848.4478 without restraints) Performing minimization step: 2945. Total energy = 6849.1670 kcal/mol (6846.4066 without restraints) Performing minimization step: 2946. Total energy = 6847.1272 kcal/mol (6844.3675 without restraints) Performing minimization step: 2947. Total energy = 6845.0891 kcal/mol (6842.3304 without restraints) Performing minimization step: 2948. Total energy = 6843.0525 kcal/mol (6840.2945 without restraints) Performing minimization step: 2949. Total energy = 6841.0179 kcal/mol (6838.2608 without restraints) Performing minimization step: 2950. Total energy = 6838.9851 kcal/mol (6836.2286 without restraints) Performing minimization step: 2951. Total energy = 6836.9536 kcal/mol (6834.1979 without restraints) Performing minimization step: 2952. Total energy = 6834.9241 kcal/mol (6832.1692 without restraints) Performing minimization step: 2953. Total energy = 6832.8965 kcal/mol (6830.1425 without restraints) Performing minimization step: 2954. Total energy = 6830.8702 kcal/mol (6828.1169 without restraints) Performing minimization step: 2955. Total energy = 6828.8457 kcal/mol (6826.0932 without restraints) Performing minimization step: 2956. Total energy = 6826.8226 kcal/mol (6824.0709 without restraints) Performing minimization step: 2957. Total energy = 6824.8013 kcal/mol (6822.0504 without restraints) Performing minimization step: 2958. Total energy = 6822.7819 kcal/mol (6820.0317 without restraints) Performing minimization step: 2959. Total energy = 6820.7639 kcal/mol (6818.0145 without restraints) Performing minimization step: 2960. Total energy = 6818.7474 kcal/mol (6815.9989 without restraints) Performing minimization step: 2961. Total energy = 6816.7332 kcal/mol (6813.9853 without restraints) Performing minimization step: 2962. Total energy = 6814.7204 kcal/mol (6811.9734 without restraints) Performing minimization step: 2963. Total energy = 6812.7093 kcal/mol (6809.9630 without restraints) Performing minimization step: 2964. Total energy = 6810.6997 kcal/mol (6807.9542 without restraints) Performing minimization step: 2965. Total energy = 6808.6918 kcal/mol (6805.9471 without restraints) Performing minimization step: 2966. Total energy = 6806.6856 kcal/mol (6803.9416 without restraints) Performing minimization step: 2967. Total energy = 6804.6811 kcal/mol (6801.9381 without restraints) Performing minimization step: 2968. Total energy = 6802.6784 kcal/mol (6799.9361 without restraints) Performing minimization step: 2969. Total energy = 6800.6774 kcal/mol (6797.9358 without restraints) Performing minimization step: 2970. Total energy = 6798.6775 kcal/mol (6795.9367 without restraints) Performing minimization step: 2971. Total energy = 6796.6799 kcal/mol (6793.9399 without restraints) Performing minimization step: 2972. Total energy = 6794.6841 kcal/mol (6791.9448 without restraints) Performing minimization step: 2973. Total energy = 6792.6893 kcal/mol (6789.9508 without restraints) Performing minimization step: 2974. Total energy = 6790.6969 kcal/mol (6787.9593 without restraints) Performing minimization step: 2975. Total energy = 6788.7064 kcal/mol (6785.9695 without restraints) Performing minimization step: 2976. Total energy = 6786.7173 kcal/mol (6783.9811 without restraints) Performing minimization step: 2977. Total energy = 6784.7295 kcal/mol (6781.9941 without restraints) Performing minimization step: 2978. Total energy = 6782.7432 kcal/mol (6780.0086 without restraints) Performing minimization step: 2979. Total energy = 6780.7590 kcal/mol (6778.0252 without restraints) Performing minimization step: 2980. Total energy = 6778.7765 kcal/mol (6776.0435 without restraints) Performing minimization step: 2981. Total energy = 6776.7954 kcal/mol (6774.0631 without restraints) Performing minimization step: 2982. Total energy = 6774.8159 kcal/mol (6772.0846 without restraints) Performing minimization step: 2983. Total energy = 6772.8384 kcal/mol (6770.1078 without restraints) Performing minimization step: 2984. Total energy = 6770.8627 kcal/mol (6768.1328 without restraints) Performing minimization step: 2985. Total energy = 6768.8886 kcal/mol (6766.1595 without restraints) Performing minimization step: 2986. Total energy = 6766.9163 kcal/mol (6764.1880 without restraints) Performing minimization step: 2987. Total energy = 6764.9459 kcal/mol (6762.2184 without restraints) Performing minimization step: 2988. Total energy = 6762.9768 kcal/mol (6760.2500 without restraints) Performing minimization step: 2989. Total energy = 6761.0092 kcal/mol (6758.2832 without restraints) Performing minimization step: 2990. Total energy = 6759.0437 kcal/mol (6756.3185 without restraints) Performing minimization step: 2991. Total energy = 6757.0796 kcal/mol (6754.3551 without restraints) Performing minimization step: 2992. Total energy = 6755.1172 kcal/mol (6752.3935 without restraints) Performing minimization step: 2993. Total energy = 6753.1563 kcal/mol (6750.4335 without restraints) Performing minimization step: 2994. Total energy = 6751.1974 kcal/mol (6748.4753 without restraints) Performing minimization step: 2995. Total energy = 6749.2405 kcal/mol (6746.5193 without restraints) Performing minimization step: 2996. Total energy = 6747.2848 kcal/mol (6744.5643 without restraints) Performing minimization step: 2997. Total energy = 6745.3307 kcal/mol (6742.6110 without restraints) Performing minimization step: 2998. Total energy = 6743.3787 kcal/mol (6740.6598 without restraints) Performing minimization step: 2999. Total energy = 6741.4274 kcal/mol (6738.7093 without restraints) Performing minimization step: 3000. Total energy = 6739.4782 kcal/mol (6736.7608 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 6737.5309 kcal/mol (6734.8143 without restraints) Performing minimization step: 3002. Total energy = 6735.5853 kcal/mol (6732.8694 without restraints) Performing minimization step: 3003. Total energy = 6733.6414 kcal/mol (6730.9265 without restraints) Performing minimization step: 3004. Total energy = 6731.6990 kcal/mol (6728.9848 without restraints) Performing minimization step: 3005. Total energy = 6729.7584 kcal/mol (6727.0449 without restraints) Performing minimization step: 3006. Total energy = 6727.8194 kcal/mol (6725.1068 without restraints) Performing minimization step: 3007. Total energy = 6725.8824 kcal/mol (6723.1704 without restraints) Performing minimization step: 3008. Total energy = 6723.9474 kcal/mol (6721.2365 without restraints) Performing minimization step: 3009. Total energy = 6722.0137 kcal/mol (6719.3034 without restraints) Performing minimization step: 3010. Total energy = 6720.0815 kcal/mol (6717.3720 without restraints) Performing minimization step: 3011. Total energy = 6718.1514 kcal/mol (6715.4426 without restraints) Performing minimization step: 3012. Total energy = 6716.2226 kcal/mol (6713.5146 without restraints) Performing minimization step: 3013. Total energy = 6714.2954 kcal/mol (6711.5882 without restraints) Performing minimization step: 3014. Total energy = 6712.3702 kcal/mol (6709.6638 without restraints) Performing minimization step: 3015. Total energy = 6710.4465 kcal/mol (6707.7409 without restraints) Performing minimization step: 3016. Total energy = 6708.5246 kcal/mol (6705.8197 without restraints) Performing minimization step: 3017. Total energy = 6706.6043 kcal/mol (6703.9002 without restraints) Performing minimization step: 3018. Total energy = 6704.6855 kcal/mol (6701.9822 without restraints) Performing minimization step: 3019. Total energy = 6702.7688 kcal/mol (6700.0663 without restraints) Performing minimization step: 3020. Total energy = 6700.8539 kcal/mol (6698.1522 without restraints) Performing minimization step: 3021. Total energy = 6698.9404 kcal/mol (6696.2394 without restraints) Performing minimization step: 3022. Total energy = 6697.0286 kcal/mol (6694.3286 without restraints) Performing minimization step: 3023. Total energy = 6695.1186 kcal/mol (6692.4193 without restraints) Performing minimization step: 3024. Total energy = 6693.2100 kcal/mol (6690.5113 without restraints) Performing minimization step: 3025. Total energy = 6691.3033 kcal/mol (6688.6056 without restraints) Performing minimization step: 3026. Total energy = 6689.3982 kcal/mol (6686.7011 without restraints) Performing minimization step: 3027. Total energy = 6687.4946 kcal/mol (6684.7984 without restraints) Performing minimization step: 3028. Total energy = 6685.5927 kcal/mol (6682.8973 without restraints) Performing minimization step: 3029. Total energy = 6683.6924 kcal/mol (6680.9978 without restraints) Performing minimization step: 3030. Total energy = 6681.7941 kcal/mol (6679.1002 without restraints) Performing minimization step: 3031. Total energy = 6679.8975 kcal/mol (6677.2044 without restraints) Performing minimization step: 3032. Total energy = 6678.0022 kcal/mol (6675.3099 without restraints) Performing minimization step: 3033. Total energy = 6676.1092 kcal/mol (6673.4177 without restraints) Performing minimization step: 3034. Total energy = 6674.2174 kcal/mol (6671.5267 without restraints) Performing minimization step: 3035. Total energy = 6672.3277 kcal/mol (6669.6377 without restraints) Performing minimization step: 3036. Total energy = 6670.4394 kcal/mol (6667.7504 without restraints) Performing minimization step: 3037. Total energy = 6668.5527 kcal/mol (6665.8643 without restraints) Performing minimization step: 3038. Total energy = 6666.6678 kcal/mol (6663.9802 without restraints) Performing minimization step: 3039. Total energy = 6664.7844 kcal/mol (6662.0975 without restraints) Performing minimization step: 3040. Total energy = 6662.9028 kcal/mol (6660.2169 without restraints) Performing minimization step: 3041. Total energy = 6661.0230 kcal/mol (6658.3377 without restraints) Performing minimization step: 3042. Total energy = 6659.1445 kcal/mol (6656.4600 without restraints) Performing minimization step: 3043. Total energy = 6657.2679 kcal/mol (6654.5843 without restraints) Performing minimization step: 3044. Total energy = 6655.3930 kcal/mol (6652.7100 without restraints) Performing minimization step: 3045. Total energy = 6653.5198 kcal/mol (6650.8378 without restraints) Performing minimization step: 3046. Total energy = 6651.6482 kcal/mol (6648.9669 without restraints) Performing minimization step: 3047. Total energy = 6649.7781 kcal/mol (6647.0975 without restraints) Performing minimization step: 3048. Total energy = 6647.9098 kcal/mol (6645.2299 without restraints) Performing minimization step: 3049. Total energy = 6646.0434 kcal/mol (6643.3644 without restraints) Performing minimization step: 3050. Total energy = 6644.1784 kcal/mol (6641.5002 without restraints) Performing minimization step: 3051. Total energy = 6642.3154 kcal/mol (6639.6379 without restraints) Performing minimization step: 3052. Total energy = 6640.4537 kcal/mol (6637.7770 without restraints) Performing minimization step: 3053. Total energy = 6638.5937 kcal/mol (6635.9178 without restraints) Performing minimization step: 3054. Total energy = 6636.7357 kcal/mol (6634.0606 without restraints) Performing minimization step: 3055. Total energy = 6634.8792 kcal/mol (6632.2050 without restraints) Performing minimization step: 3056. Total energy = 6633.0244 kcal/mol (6630.3510 without restraints) Performing minimization step: 3057. Total energy = 6631.1716 kcal/mol (6628.4989 without restraints) Performing minimization step: 3058. Total energy = 6629.3205 kcal/mol (6626.6486 without restraints) Performing minimization step: 3059. Total energy = 6627.4704 kcal/mol (6624.7993 without restraints) Performing minimization step: 3060. Total energy = 6625.6221 kcal/mol (6622.9517 without restraints) Performing minimization step: 3061. Total energy = 6623.7755 kcal/mol (6621.1059 without restraints) Performing minimization step: 3062. Total energy = 6621.9309 kcal/mol (6619.2620 without restraints) Performing minimization step: 3063. Total energy = 6620.0875 kcal/mol (6617.4195 without restraints) Performing minimization step: 3064. Total energy = 6618.2458 kcal/mol (6615.5785 without restraints) Performing minimization step: 3065. Total energy = 6616.4056 kcal/mol (6613.7392 without restraints) Performing minimization step: 3066. Total energy = 6614.5673 kcal/mol (6611.9015 without restraints) Performing minimization step: 3067. Total energy = 6612.7308 kcal/mol (6610.0658 without restraints) Performing minimization step: 3068. Total energy = 6610.8959 kcal/mol (6608.2317 without restraints) Performing minimization step: 3069. Total energy = 6609.0624 kcal/mol (6606.3990 without restraints) Performing minimization step: 3070. Total energy = 6607.2309 kcal/mol (6604.5684 without restraints) Performing minimization step: 3071. Total energy = 6605.4019 kcal/mol (6602.7401 without restraints) Performing minimization step: 3072. Total energy = 6603.5737 kcal/mol (6600.9127 without restraints) Performing minimization step: 3073. Total energy = 6601.7469 kcal/mol (6599.0867 without restraints) Performing minimization step: 3074. Total energy = 6599.9220 kcal/mol (6597.2625 without restraints) Performing minimization step: 3075. Total energy = 6598.0987 kcal/mol (6595.4400 without restraints) Performing minimization step: 3076. Total energy = 6596.2769 kcal/mol (6593.6191 without restraints) Performing minimization step: 3077. Total energy = 6594.4572 kcal/mol (6591.8001 without restraints) Performing minimization step: 3078. Total energy = 6592.6392 kcal/mol (6589.9831 without restraints) Performing minimization step: 3079. Total energy = 6590.8228 kcal/mol (6588.1672 without restraints) Performing minimization step: 3080. Total energy = 6589.0075 kcal/mol (6586.3527 without restraints) Performing minimization step: 3081. Total energy = 6587.1939 kcal/mol (6584.5399 without restraints) Performing minimization step: 3082. Total energy = 6585.3821 kcal/mol (6582.7290 without restraints) Performing minimization step: 3083. Total energy = 6583.5721 kcal/mol (6580.9197 without restraints) Performing minimization step: 3084. Total energy = 6581.7636 kcal/mol (6579.1119 without restraints) Performing minimization step: 3085. Total energy = 6579.9568 kcal/mol (6577.3060 without restraints) Performing minimization step: 3086. Total energy = 6578.1518 kcal/mol (6575.5020 without restraints) Performing minimization step: 3087. Total energy = 6576.3491 kcal/mol (6573.6999 without restraints) Performing minimization step: 3088. Total energy = 6574.5473 kcal/mol (6571.8989 without restraints) Performing minimization step: 3089. Total energy = 6572.7475 kcal/mol (6570.0998 without restraints) Performing minimization step: 3090. Total energy = 6570.9493 kcal/mol (6568.3025 without restraints) Performing minimization step: 3091. Total energy = 6569.1526 kcal/mol (6566.5065 without restraints) Performing minimization step: 3092. Total energy = 6567.3579 kcal/mol (6564.7126 without restraints) Performing minimization step: 3093. Total energy = 6565.5645 kcal/mol (6562.9199 without restraints) Performing minimization step: 3094. Total energy = 6563.7727 kcal/mol (6561.1289 without restraints) Performing minimization step: 3095. Total energy = 6561.9828 kcal/mol (6559.3398 without restraints) Performing minimization step: 3096. Total energy = 6560.1944 kcal/mol (6557.5521 without restraints) Performing minimization step: 3097. Total energy = 6558.4076 kcal/mol (6555.7663 without restraints) Performing minimization step: 3098. Total energy = 6556.6225 kcal/mol (6553.9818 without restraints) Performing minimization step: 3099. Total energy = 6554.8393 kcal/mol (6552.1995 without restraints) Performing minimization step: 3100. Total energy = 6553.0575 kcal/mol (6550.4185 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 6551.2775 kcal/mol (6548.6393 without restraints) Performing minimization step: 3102. Total energy = 6549.4989 kcal/mol (6546.8613 without restraints) Performing minimization step: 3103. Total energy = 6547.7221 kcal/mol (6545.0853 without restraints) Performing minimization step: 3104. Total energy = 6545.9466 kcal/mol (6543.3104 without restraints) Performing minimization step: 3105. Total energy = 6544.1731 kcal/mol (6541.5379 without restraints) Performing minimization step: 3106. Total energy = 6542.4011 kcal/mol (6539.7667 without restraints) Performing minimization step: 3107. Total energy = 6540.6305 kcal/mol (6537.9970 without restraints) Performing minimization step: 3108. Total energy = 6538.8617 kcal/mol (6536.2289 without restraints) Performing minimization step: 3109. Total energy = 6537.0949 kcal/mol (6534.4630 without restraints) Performing minimization step: 3110. Total energy = 6535.3295 kcal/mol (6532.6983 without restraints) Performing minimization step: 3111. Total energy = 6533.5658 kcal/mol (6530.9353 without restraints) Performing minimization step: 3112. Total energy = 6531.8037 kcal/mol (6529.1741 without restraints) Performing minimization step: 3113. Total energy = 6530.0431 kcal/mol (6527.4141 without restraints) Performing minimization step: 3114. Total energy = 6528.2843 kcal/mol (6525.6562 without restraints) Performing minimization step: 3115. Total energy = 6526.5273 kcal/mol (6523.9000 without restraints) Performing minimization step: 3116. Total energy = 6524.7718 kcal/mol (6522.1453 without restraints) Performing minimization step: 3117. Total energy = 6523.0182 kcal/mol (6520.3924 without restraints) Performing minimization step: 3118. Total energy = 6521.2655 kcal/mol (6518.6406 without restraints) Performing minimization step: 3119. Total energy = 6519.5148 kcal/mol (6516.8906 without restraints) Performing minimization step: 3120. Total energy = 6517.7659 kcal/mol (6515.1424 without restraints) Performing minimization step: 3121. Total energy = 6516.0185 kcal/mol (6513.3959 without restraints) Performing minimization step: 3122. Total energy = 6514.2731 kcal/mol (6511.6513 without restraints) Performing minimization step: 3123. Total energy = 6512.5293 kcal/mol (6509.9082 without restraints) Performing minimization step: 3124. Total energy = 6510.7871 kcal/mol (6508.1668 without restraints) Performing minimization step: 3125. Total energy = 6509.0470 kcal/mol (6506.4275 without restraints) Performing minimization step: 3126. Total energy = 6507.3080 kcal/mol (6504.6893 without restraints) Performing minimization step: 3127. Total energy = 6505.5703 kcal/mol (6502.9524 without restraints) Performing minimization step: 3128. Total energy = 6503.8345 kcal/mol (6501.2174 without restraints) Performing minimization step: 3129. Total energy = 6502.1006 kcal/mol (6499.4842 without restraints) Performing minimization step: 3130. Total energy = 6500.3678 kcal/mol (6497.7522 without restraints) Performing minimization step: 3131. Total energy = 6498.6371 kcal/mol (6496.0223 without restraints) Performing minimization step: 3132. Total energy = 6496.9080 kcal/mol (6494.2940 without restraints) Performing minimization step: 3133. Total energy = 6495.1804 kcal/mol (6492.5672 without restraints) Performing minimization step: 3134. Total energy = 6493.4547 kcal/mol (6490.8422 without restraints) Performing minimization step: 3135. Total energy = 6491.7303 kcal/mol (6489.1186 without restraints) Performing minimization step: 3136. Total energy = 6490.0079 kcal/mol (6487.3970 without restraints) Performing minimization step: 3137. Total energy = 6488.2870 kcal/mol (6485.6769 without restraints) Performing minimization step: 3138. Total energy = 6486.5673 kcal/mol (6483.9580 without restraints) Performing minimization step: 3139. Total energy = 6484.8499 kcal/mol (6482.2414 without restraints) Performing minimization step: 3140. Total energy = 6483.1336 kcal/mol (6480.5259 without restraints) Performing minimization step: 3141. Total energy = 6481.4190 kcal/mol (6478.8120 without restraints) Performing minimization step: 3142. Total energy = 6479.7060 kcal/mol (6477.0998 without restraints) Performing minimization step: 3143. Total energy = 6477.9946 kcal/mol (6475.3892 without restraints) Performing minimization step: 3144. Total energy = 6476.2849 kcal/mol (6473.6803 without restraints) Performing minimization step: 3145. Total energy = 6474.5770 kcal/mol (6471.9733 without restraints) Performing minimization step: 3146. Total energy = 6472.8707 kcal/mol (6470.2676 without restraints) Performing minimization step: 3147. Total energy = 6471.1658 kcal/mol (6468.5636 without restraints) Performing minimization step: 3148. Total energy = 6469.4626 kcal/mol (6466.8611 without restraints) Performing minimization step: 3149. Total energy = 6467.7610 kcal/mol (6465.1603 without restraints) Performing minimization step: 3150. Total energy = 6466.0609 kcal/mol (6463.4610 without restraints) Performing minimization step: 3151. Total energy = 6464.3629 kcal/mol (6461.7638 without restraints) Performing minimization step: 3152. Total energy = 6462.6662 kcal/mol (6460.0679 without restraints) Performing minimization step: 3153. Total energy = 6460.9714 kcal/mol (6458.3738 without restraints) Performing minimization step: 3154. Total energy = 6459.2781 kcal/mol (6456.6813 without restraints) Performing minimization step: 3155. Total energy = 6457.5861 kcal/mol (6454.9901 without restraints) Performing minimization step: 3156. Total energy = 6455.8960 kcal/mol (6453.3009 without restraints) Performing minimization step: 3157. Total energy = 6454.2076 kcal/mol (6451.6131 without restraints) Performing minimization step: 3158. Total energy = 6452.5207 kcal/mol (6449.9270 without restraints) Performing minimization step: 3159. Total energy = 6450.8354 kcal/mol (6448.2426 without restraints) Performing minimization step: 3160. Total energy = 6449.1515 kcal/mol (6446.5593 without restraints) Performing minimization step: 3161. Total energy = 6447.4689 kcal/mol (6444.8777 without restraints) Performing minimization step: 3162. Total energy = 6445.7881 kcal/mol (6443.1975 without restraints) Performing minimization step: 3163. Total energy = 6444.1096 kcal/mol (6441.5197 without restraints) Performing minimization step: 3164. Total energy = 6442.4322 kcal/mol (6439.8433 without restraints) Performing minimization step: 3165. Total energy = 6440.7566 kcal/mol (6438.1685 without restraints) Performing minimization step: 3166. Total energy = 6439.0828 kcal/mol (6436.4954 without restraints) Performing minimization step: 3167. Total energy = 6437.4105 kcal/mol (6434.8239 without restraints) Performing minimization step: 3168. Total energy = 6435.7403 kcal/mol (6433.1545 without restraints) Performing minimization step: 3169. Total energy = 6434.0712 kcal/mol (6431.4861 without restraints) Performing minimization step: 3170. Total energy = 6432.4034 kcal/mol (6429.8191 without restraints) Performing minimization step: 3171. Total energy = 6430.7377 kcal/mol (6428.1542 without restraints) Performing minimization step: 3172. Total energy = 6429.0731 kcal/mol (6426.4904 without restraints) Performing minimization step: 3173. Total energy = 6427.4101 kcal/mol (6424.8281 without restraints) Performing minimization step: 3174. Total energy = 6425.7492 kcal/mol (6423.1681 without restraints) Performing minimization step: 3175. Total energy = 6424.0893 kcal/mol (6421.5089 without restraints) Performing minimization step: 3176. Total energy = 6422.4312 kcal/mol (6419.8516 without restraints) Performing minimization step: 3177. Total energy = 6420.7747 kcal/mol (6418.1959 without restraints) Performing minimization step: 3178. Total energy = 6419.1198 kcal/mol (6416.5418 without restraints) Performing minimization step: 3179. Total energy = 6417.4665 kcal/mol (6414.8893 without restraints) Performing minimization step: 3180. Total energy = 6415.8148 kcal/mol (6413.2383 without restraints) Performing minimization step: 3181. Total energy = 6414.1649 kcal/mol (6411.5892 without restraints) Performing minimization step: 3182. Total energy = 6412.5168 kcal/mol (6409.9419 without restraints) Performing minimization step: 3183. Total energy = 6410.8698 kcal/mol (6408.2956 without restraints) Performing minimization step: 3184. Total energy = 6409.2245 kcal/mol (6406.6512 without restraints) Performing minimization step: 3185. Total energy = 6407.5808 kcal/mol (6405.0082 without restraints) Performing minimization step: 3186. Total energy = 6405.9388 kcal/mol (6403.3672 without restraints) Performing minimization step: 3187. Total energy = 6404.2987 kcal/mol (6401.7277 without restraints) Performing minimization step: 3188. Total energy = 6402.6601 kcal/mol (6400.0899 without restraints) Performing minimization step: 3189. Total energy = 6401.0230 kcal/mol (6398.4535 without restraints) Performing minimization step: 3190. Total energy = 6399.3874 kcal/mol (6396.8187 without restraints) Performing minimization step: 3191. Total energy = 6397.7531 kcal/mol (6395.1853 without restraints) Performing minimization step: 3192. Total energy = 6396.1210 kcal/mol (6393.5540 without restraints) Performing minimization step: 3193. Total energy = 6394.4904 kcal/mol (6391.9241 without restraints) Performing minimization step: 3194. Total energy = 6392.8610 kcal/mol (6390.2955 without restraints) Performing minimization step: 3195. Total energy = 6391.2334 kcal/mol (6388.6687 without restraints) Performing minimization step: 3196. Total energy = 6389.6074 kcal/mol (6387.0435 without restraints) Performing minimization step: 3197. Total energy = 6387.9828 kcal/mol (6385.4197 without restraints) Performing minimization step: 3198. Total energy = 6386.3600 kcal/mol (6383.7976 without restraints) Performing minimization step: 3199. Total energy = 6384.7385 kcal/mol (6382.1769 without restraints) Performing minimization step: 3200. Total energy = 6383.1186 kcal/mol (6380.5578 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 6381.4998 kcal/mol (6378.9397 without restraints) Performing minimization step: 3202. Total energy = 6379.8831 kcal/mol (6377.3239 without restraints) Performing minimization step: 3203. Total energy = 6378.2680 kcal/mol (6375.7096 without restraints) Performing minimization step: 3204. Total energy = 6376.6545 kcal/mol (6374.0968 without restraints) Performing minimization step: 3205. Total energy = 6375.0425 kcal/mol (6372.4856 without restraints) Performing minimization step: 3206. Total energy = 6373.4322 kcal/mol (6370.8761 without restraints) Performing minimization step: 3207. Total energy = 6371.8238 kcal/mol (6369.2684 without restraints) Performing minimization step: 3208. Total energy = 6370.2164 kcal/mol (6367.6617 without restraints) Performing minimization step: 3209. Total energy = 6368.6105 kcal/mol (6366.0567 without restraints) Performing minimization step: 3210. Total energy = 6367.0065 kcal/mol (6364.4535 without restraints) Performing minimization step: 3211. Total energy = 6365.4046 kcal/mol (6362.8525 without restraints) Performing minimization step: 3212. Total energy = 6363.8037 kcal/mol (6361.2522 without restraints) Performing minimization step: 3213. Total energy = 6362.2044 kcal/mol (6359.6538 without restraints) Performing minimization step: 3214. Total energy = 6360.6070 kcal/mol (6358.0572 without restraints) Performing minimization step: 3215. Total energy = 6359.0106 kcal/mol (6356.4615 without restraints) Performing minimization step: 3216. Total energy = 6357.4160 kcal/mol (6354.8678 without restraints) Performing minimization step: 3217. Total energy = 6355.8229 kcal/mol (6353.2754 without restraints) Performing minimization step: 3218. Total energy = 6354.2315 kcal/mol (6351.6848 without restraints) Performing minimization step: 3219. Total energy = 6352.6415 kcal/mol (6350.0955 without restraints) Performing minimization step: 3220. Total energy = 6351.0535 kcal/mol (6348.5085 without restraints) Performing minimization step: 3221. Total energy = 6349.4673 kcal/mol (6346.9228 without restraints) Performing minimization step: 3222. Total energy = 6347.8820 kcal/mol (6345.3384 without restraints) Performing minimization step: 3223. Total energy = 6346.2985 kcal/mol (6343.7556 without restraints) Performing minimization step: 3224. Total energy = 6344.7162 kcal/mol (6342.1742 without restraints) Performing minimization step: 3225. Total energy = 6343.1358 kcal/mol (6340.5945 without restraints) Performing minimization step: 3226. Total energy = 6341.5567 kcal/mol (6339.0162 without restraints) Performing minimization step: 3227. Total energy = 6339.9792 kcal/mol (6337.4396 without restraints) Performing minimization step: 3228. Total energy = 6338.4034 kcal/mol (6335.8645 without restraints) Performing minimization step: 3229. Total energy = 6336.8293 kcal/mol (6334.2912 without restraints) Performing minimization step: 3230. Total energy = 6335.2565 kcal/mol (6332.7191 without restraints) Performing minimization step: 3231. Total energy = 6333.6852 kcal/mol (6331.1486 without restraints) Performing minimization step: 3232. Total energy = 6332.1157 kcal/mol (6329.5800 without restraints) Performing minimization step: 3233. Total energy = 6330.5476 kcal/mol (6328.0125 without restraints) Performing minimization step: 3234. Total energy = 6328.9806 kcal/mol (6326.4464 without restraints) Performing minimization step: 3235. Total energy = 6327.4157 kcal/mol (6324.8825 without restraints) Performing minimization step: 3236. Total energy = 6325.8527 kcal/mol (6323.3200 without restraints) Performing minimization step: 3237. Total energy = 6324.2905 kcal/mol (6321.7586 without restraints) Performing minimization step: 3238. Total energy = 6322.7304 kcal/mol (6320.1992 without restraints) Performing minimization step: 3239. Total energy = 6321.1715 kcal/mol (6318.6412 without restraints) Performing minimization step: 3240. Total energy = 6319.6140 kcal/mol (6317.0844 without restraints) Performing minimization step: 3241. Total energy = 6318.0579 kcal/mol (6315.5291 without restraints) Performing minimization step: 3242. Total energy = 6316.5035 kcal/mol (6313.9755 without restraints) Performing minimization step: 3243. Total energy = 6314.9506 kcal/mol (6312.4233 without restraints) Performing minimization step: 3244. Total energy = 6313.3994 kcal/mol (6310.8729 without restraints) Performing minimization step: 3245. Total energy = 6311.8498 kcal/mol (6309.3241 without restraints) Performing minimization step: 3246. Total energy = 6310.3015 kcal/mol (6307.7765 without restraints) Performing minimization step: 3247. Total energy = 6308.7553 kcal/mol (6306.2312 without restraints) Performing minimization step: 3248. Total energy = 6307.2102 kcal/mol (6304.6869 without restraints) Performing minimization step: 3249. Total energy = 6305.6668 kcal/mol (6303.1442 without restraints) Performing minimization step: 3250. Total energy = 6304.1247 kcal/mol (6301.6029 without restraints) Performing minimization step: 3251. Total energy = 6302.5842 kcal/mol (6300.0632 without restraints) Performing minimization step: 3252. Total energy = 6301.0450 kcal/mol (6298.5249 without restraints) Performing minimization step: 3253. Total energy = 6299.5079 kcal/mol (6296.9885 without restraints) Performing minimization step: 3254. Total energy = 6297.9723 kcal/mol (6295.4536 without restraints) Performing minimization step: 3255. Total energy = 6296.4384 kcal/mol (6293.9206 without restraints) Performing minimization step: 3256. Total energy = 6294.9055 kcal/mol (6292.3884 without restraints) Performing minimization step: 3257. Total energy = 6293.3744 kcal/mol (6290.8581 without restraints) Performing minimization step: 3258. Total energy = 6291.8445 kcal/mol (6289.3290 without restraints) Performing minimization step: 3259. Total energy = 6290.3161 kcal/mol (6287.8013 without restraints) Performing minimization step: 3260. Total energy = 6288.7894 kcal/mol (6286.2754 without restraints) Performing minimization step: 3261. Total energy = 6287.2643 kcal/mol (6284.7513 without restraints) Performing minimization step: 3262. Total energy = 6285.7405 kcal/mol (6283.2281 without restraints) Performing minimization step: 3263. Total energy = 6284.2179 kcal/mol (6281.7062 without restraints) Performing minimization step: 3264. Total energy = 6282.6971 kcal/mol (6280.1864 without restraints) Performing minimization step: 3265. Total energy = 6281.1784 kcal/mol (6278.6683 without restraints) Performing minimization step: 3266. Total energy = 6279.6606 kcal/mol (6277.1513 without restraints) Performing minimization step: 3267. Total energy = 6278.1442 kcal/mol (6275.6357 without restraints) Performing minimization step: 3268. Total energy = 6276.6295 kcal/mol (6274.1217 without restraints) Performing minimization step: 3269. Total energy = 6275.1163 kcal/mol (6272.6094 without restraints) Performing minimization step: 3270. Total energy = 6273.6048 kcal/mol (6271.0986 without restraints) Performing minimization step: 3271. Total energy = 6272.0946 kcal/mol (6269.5892 without restraints) Performing minimization step: 3272. Total energy = 6270.5858 kcal/mol (6268.0811 without restraints) Performing minimization step: 3273. Total energy = 6269.0785 kcal/mol (6266.5746 without restraints) Performing minimization step: 3274. Total energy = 6267.5728 kcal/mol (6265.0696 without restraints) Performing minimization step: 3275. Total energy = 6266.0685 kcal/mol (6263.5661 without restraints) Performing minimization step: 3276. Total energy = 6264.5658 kcal/mol (6262.0643 without restraints) Performing minimization step: 3277. Total energy = 6263.0644 kcal/mol (6260.5636 without restraints) Performing minimization step: 3278. Total energy = 6261.5646 kcal/mol (6259.0646 without restraints) Performing minimization step: 3279. Total energy = 6260.0662 kcal/mol (6257.5671 without restraints) Performing minimization step: 3280. Total energy = 6258.5697 kcal/mol (6256.0712 without restraints) Performing minimization step: 3281. Total energy = 6257.0744 kcal/mol (6254.5767 without restraints) Performing minimization step: 3282. Total energy = 6255.5805 kcal/mol (6253.0836 without restraints) Performing minimization step: 3283. Total energy = 6254.0877 kcal/mol (6251.5916 without restraints) Performing minimization step: 3284. Total energy = 6252.5969 kcal/mol (6250.1016 without restraints) Performing minimization step: 3285. Total energy = 6251.1076 kcal/mol (6248.6132 without restraints) Performing minimization step: 3286. Total energy = 6249.6202 kcal/mol (6247.1265 without restraints) Performing minimization step: 3287. Total energy = 6248.1339 kcal/mol (6245.6410 without restraints) Performing minimization step: 3288. Total energy = 6246.6495 kcal/mol (6244.1573 without restraints) Performing minimization step: 3289. Total energy = 6245.1663 kcal/mol (6242.6748 without restraints) Performing minimization step: 3290. Total energy = 6243.6843 kcal/mol (6241.1937 without restraints) Performing minimization step: 3291. Total energy = 6242.2042 kcal/mol (6239.7143 without restraints) Performing minimization step: 3292. Total energy = 6240.7257 kcal/mol (6238.2365 without restraints) Performing minimization step: 3293. Total energy = 6239.2481 kcal/mol (6236.7598 without restraints) Performing minimization step: 3294. Total energy = 6237.7720 kcal/mol (6235.2845 without restraints) Performing minimization step: 3295. Total energy = 6236.2974 kcal/mol (6233.8107 without restraints) Performing minimization step: 3296. Total energy = 6234.8246 kcal/mol (6232.3386 without restraints) Performing minimization step: 3297. Total energy = 6233.3530 kcal/mol (6230.8678 without restraints) Performing minimization step: 3298. Total energy = 6231.8828 kcal/mol (6229.3984 without restraints) Performing minimization step: 3299. Total energy = 6230.4144 kcal/mol (6227.9307 without restraints) Performing minimization step: 3300. Total energy = 6228.9473 kcal/mol (6226.4644 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 6227.4811 kcal/mol (6224.9991 without restraints) Performing minimization step: 3302. Total energy = 6226.0170 kcal/mol (6223.5356 without restraints) Performing minimization step: 3303. Total energy = 6224.5543 kcal/mol (6222.0738 without restraints) Performing minimization step: 3304. Total energy = 6223.0931 kcal/mol (6220.6133 without restraints) Performing minimization step: 3305. Total energy = 6221.6333 kcal/mol (6219.1544 without restraints) Performing minimization step: 3306. Total energy = 6220.1753 kcal/mol (6217.6970 without restraints) Performing minimization step: 3307. Total energy = 6218.7181 kcal/mol (6216.2406 without restraints) Performing minimization step: 3308. Total energy = 6217.2626 kcal/mol (6214.7859 without restraints) Performing minimization step: 3309. Total energy = 6215.8087 kcal/mol (6213.3327 without restraints) Performing minimization step: 3310. Total energy = 6214.3560 kcal/mol (6211.8809 without restraints) Performing minimization step: 3311. Total energy = 6212.9048 kcal/mol (6210.4303 without restraints) Performing minimization step: 3312. Total energy = 6211.4552 kcal/mol (6208.9815 without restraints) Performing minimization step: 3313. Total energy = 6210.0069 kcal/mol (6207.5341 without restraints) Performing minimization step: 3314. Total energy = 6208.5602 kcal/mol (6206.0881 without restraints) Performing minimization step: 3315. Total energy = 6207.1145 kcal/mol (6204.6432 without restraints) Performing minimization step: 3316. Total energy = 6205.6704 kcal/mol (6203.1998 without restraints) Performing minimization step: 3317. Total energy = 6204.2282 kcal/mol (6201.7584 without restraints) Performing minimization step: 3318. Total energy = 6202.7870 kcal/mol (6200.3181 without restraints) Performing minimization step: 3319. Total energy = 6201.3473 kcal/mol (6198.8791 without restraints) Performing minimization step: 3320. Total energy = 6199.9090 kcal/mol (6197.4416 without restraints) Performing minimization step: 3321. Total energy = 6198.4723 kcal/mol (6196.0057 without restraints) Performing minimization step: 3322. Total energy = 6197.0371 kcal/mol (6194.5713 without restraints) Performing minimization step: 3323. Total energy = 6195.6034 kcal/mol (6193.1383 without restraints) Performing minimization step: 3324. Total energy = 6194.1708 kcal/mol (6191.7066 without restraints) Performing minimization step: 3325. Total energy = 6192.7403 kcal/mol (6190.2769 without restraints) Performing minimization step: 3326. Total energy = 6191.3113 kcal/mol (6188.8484 without restraints) Performing minimization step: 3327. Total energy = 6189.8830 kcal/mol (6187.4211 without restraints) Performing minimization step: 3328. Total energy = 6188.4563 kcal/mol (6185.9951 without restraints) Performing minimization step: 3329. Total energy = 6187.0309 kcal/mol (6184.5704 without restraints) Performing minimization step: 3330. Total energy = 6185.6071 kcal/mol (6183.1474 without restraints) Performing minimization step: 3331. Total energy = 6184.1845 kcal/mol (6181.7256 without restraints) Performing minimization step: 3332. Total energy = 6182.7634 kcal/mol (6180.3053 without restraints) Performing minimization step: 3333. Total energy = 6181.3441 kcal/mol (6178.8867 without restraints) Performing minimization step: 3334. Total energy = 6179.9258 kcal/mol (6177.4693 without restraints) Performing minimization step: 3335. Total energy = 6178.5092 kcal/mol (6176.0536 without restraints) Performing minimization step: 3336. Total energy = 6177.0939 kcal/mol (6174.6388 without restraints) Performing minimization step: 3337. Total energy = 6175.6799 kcal/mol (6173.2257 without restraints) Performing minimization step: 3338. Total energy = 6174.2680 kcal/mol (6171.8146 without restraints) Performing minimization step: 3339. Total energy = 6172.8569 kcal/mol (6170.4042 without restraints) Performing minimization step: 3340. Total energy = 6171.4475 kcal/mol (6168.9955 without restraints) Performing minimization step: 3341. Total energy = 6170.0393 kcal/mol (6167.5882 without restraints) Performing minimization step: 3342. Total energy = 6168.6324 kcal/mol (6166.1821 without restraints) Performing minimization step: 3343. Total energy = 6167.2269 kcal/mol (6164.7773 without restraints) Performing minimization step: 3344. Total energy = 6165.8230 kcal/mol (6163.3742 without restraints) Performing minimization step: 3345. Total energy = 6164.4203 kcal/mol (6161.9723 without restraints) Performing minimization step: 3346. Total energy = 6163.0197 kcal/mol (6160.5724 without restraints) Performing minimization step: 3347. Total energy = 6161.6197 kcal/mol (6159.1731 without restraints) Performing minimization step: 3348. Total energy = 6160.2210 kcal/mol (6157.7752 without restraints) Performing minimization step: 3349. Total energy = 6158.8236 kcal/mol (6156.3786 without restraints) Performing minimization step: 3350. Total energy = 6157.4283 kcal/mol (6154.9841 without restraints) Performing minimization step: 3351. Total energy = 6156.0338 kcal/mol (6153.5903 without restraints) Performing minimization step: 3352. Total energy = 6154.6414 kcal/mol (6152.1987 without restraints) Performing minimization step: 3353. Total energy = 6153.2500 kcal/mol (6150.8081 without restraints) Performing minimization step: 3354. Total energy = 6151.8600 kcal/mol (6149.4188 without restraints) Performing minimization step: 3355. Total energy = 6150.4712 kcal/mol (6148.0310 without restraints) Performing minimization step: 3356. Total energy = 6149.0839 kcal/mol (6146.6443 without restraints) Performing minimization step: 3357. Total energy = 6147.6977 kcal/mol (6145.2588 without restraints) Performing minimization step: 3358. Total energy = 6146.3128 kcal/mol (6143.8747 without restraints) Performing minimization step: 3359. Total energy = 6144.9292 kcal/mol (6142.4919 without restraints) Performing minimization step: 3360. Total energy = 6143.5470 kcal/mol (6141.1105 without restraints) Performing minimization step: 3361. Total energy = 6142.1664 kcal/mol (6139.7307 without restraints) Performing minimization step: 3362. Total energy = 6140.7874 kcal/mol (6138.3524 without restraints) Performing minimization step: 3363. Total energy = 6139.4093 kcal/mol (6136.9751 without restraints) Performing minimization step: 3364. Total energy = 6138.0329 kcal/mol (6135.5994 without restraints) Performing minimization step: 3365. Total energy = 6136.6577 kcal/mol (6134.2250 without restraints) Performing minimization step: 3366. Total energy = 6135.2838 kcal/mol (6132.8519 without restraints) Performing minimization step: 3367. Total energy = 6133.9119 kcal/mol (6131.4807 without restraints) Performing minimization step: 3368. Total energy = 6132.5407 kcal/mol (6130.1103 without restraints) Performing minimization step: 3369. Total energy = 6131.1707 kcal/mol (6128.7412 without restraints) Performing minimization step: 3370. Total energy = 6129.8023 kcal/mol (6127.3734 without restraints) Performing minimization step: 3371. Total energy = 6128.4352 kcal/mol (6126.0073 without restraints) Performing minimization step: 3372. Total energy = 6127.0701 kcal/mol (6124.6428 without restraints) Performing minimization step: 3373. Total energy = 6125.7058 kcal/mol (6123.2793 without restraints) Performing minimization step: 3374. Total energy = 6124.3425 kcal/mol (6121.9167 without restraints) Performing minimization step: 3375. Total energy = 6122.9810 kcal/mol (6120.5560 without restraints) Performing minimization step: 3376. Total energy = 6121.6206 kcal/mol (6119.1964 without restraints) Performing minimization step: 3377. Total energy = 6120.2616 kcal/mol (6117.8381 without restraints) Performing minimization step: 3378. Total energy = 6118.9037 kcal/mol (6116.4809 without restraints) Performing minimization step: 3379. Total energy = 6117.5473 kcal/mol (6115.1254 without restraints) Performing minimization step: 3380. Total energy = 6116.1925 kcal/mol (6113.7713 without restraints) Performing minimization step: 3381. Total energy = 6114.8390 kcal/mol (6112.4186 without restraints) Performing minimization step: 3382. Total energy = 6113.4869 kcal/mol (6111.0672 without restraints) Performing minimization step: 3383. Total energy = 6112.1358 kcal/mol (6109.7169 without restraints) Performing minimization step: 3384. Total energy = 6110.7859 kcal/mol (6108.3679 without restraints) Performing minimization step: 3385. Total energy = 6109.4378 kcal/mol (6107.0205 without restraints) Performing minimization step: 3386. Total energy = 6108.0908 kcal/mol (6105.6743 without restraints) Performing minimization step: 3387. Total energy = 6106.7452 kcal/mol (6104.3294 without restraints) Performing minimization step: 3388. Total energy = 6105.4016 kcal/mol (6102.9866 without restraints) Performing minimization step: 3389. Total energy = 6104.0588 kcal/mol (6101.6447 without restraints) Performing minimization step: 3390. Total energy = 6102.7175 kcal/mol (6100.3040 without restraints) Performing minimization step: 3391. Total energy = 6101.3769 kcal/mol (6098.9641 without restraints) Performing minimization step: 3392. Total energy = 6100.0377 kcal/mol (6097.6257 without restraints) Performing minimization step: 3393. Total energy = 6098.7000 kcal/mol (6096.2888 without restraints) Performing minimization step: 3394. Total energy = 6097.3636 kcal/mol (6094.9531 without restraints) Performing minimization step: 3395. Total energy = 6096.0292 kcal/mol (6093.6195 without restraints) Performing minimization step: 3396. Total energy = 6094.6959 kcal/mol (6092.2870 without restraints) Performing minimization step: 3397. Total energy = 6093.3633 kcal/mol (6090.9551 without restraints) Performing minimization step: 3398. Total energy = 6092.0320 kcal/mol (6089.6246 without restraints) Performing minimization step: 3399. Total energy = 6090.7021 kcal/mol (6088.2954 without restraints) Performing minimization step: 3400. Total energy = 6089.3734 kcal/mol (6086.9675 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 6088.0461 kcal/mol (6085.6410 without restraints) Performing minimization step: 3402. Total energy = 6086.7206 kcal/mol (6084.3162 without restraints) Performing minimization step: 3403. Total energy = 6085.3958 kcal/mol (6082.9922 without restraints) Performing minimization step: 3404. Total energy = 6084.0725 kcal/mol (6081.6697 without restraints) Performing minimization step: 3405. Total energy = 6082.7503 kcal/mol (6080.3483 without restraints) Performing minimization step: 3406. Total energy = 6081.4294 kcal/mol (6079.0281 without restraints) Performing minimization step: 3407. Total energy = 6080.1097 kcal/mol (6077.7092 without restraints) Performing minimization step: 3408. Total energy = 6078.7912 kcal/mol (6076.3914 without restraints) Performing minimization step: 3409. Total energy = 6077.4743 kcal/mol (6075.0754 without restraints) Performing minimization step: 3410. Total energy = 6076.1588 kcal/mol (6073.7606 without restraints) Performing minimization step: 3411. Total energy = 6074.8443 kcal/mol (6072.4468 without restraints) Performing minimization step: 3412. Total energy = 6073.5312 kcal/mol (6071.1344 without restraints) Performing minimization step: 3413. Total energy = 6072.2195 kcal/mol (6069.8235 without restraints) Performing minimization step: 3414. Total energy = 6070.9091 kcal/mol (6068.5139 without restraints) Performing minimization step: 3415. Total energy = 6069.5998 kcal/mol (6067.2054 without restraints) Performing minimization step: 3416. Total energy = 6068.2919 kcal/mol (6065.8982 without restraints) Performing minimization step: 3417. Total energy = 6066.9855 kcal/mol (6064.5926 without restraints) Performing minimization step: 3418. Total energy = 6065.6802 kcal/mol (6063.2880 without restraints) Performing minimization step: 3419. Total energy = 6064.3762 kcal/mol (6061.9848 without restraints) Performing minimization step: 3420. Total energy = 6063.0732 kcal/mol (6060.6825 without restraints) Performing minimization step: 3421. Total energy = 6061.7714 kcal/mol (6059.3816 without restraints) Performing minimization step: 3422. Total energy = 6060.4711 kcal/mol (6058.0820 without restraints) Performing minimization step: 3423. Total energy = 6059.1720 kcal/mol (6056.7836 without restraints) Performing minimization step: 3424. Total energy = 6057.8742 kcal/mol (6055.4866 without restraints) Performing minimization step: 3425. Total energy = 6056.5776 kcal/mol (6054.1907 without restraints) Performing minimization step: 3426. Total energy = 6055.2819 kcal/mol (6052.8958 without restraints) Performing minimization step: 3427. Total energy = 6053.9879 kcal/mol (6051.6026 without restraints) Performing minimization step: 3428. Total energy = 6052.6955 kcal/mol (6050.3109 without restraints) Performing minimization step: 3429. Total energy = 6051.4046 kcal/mol (6049.0211 without restraints) Performing minimization step: 3430. Total energy = 6050.1146 kcal/mol (6047.7316 without restraints) Performing minimization step: 3431. Total energy = 6048.8256 kcal/mol (6046.4434 without restraints) Performing minimization step: 3432. Total energy = 6047.5380 kcal/mol (6045.1565 without restraints) Performing minimization step: 3433. Total energy = 6046.2517 kcal/mol (6043.8710 without restraints) Performing minimization step: 3434. Total energy = 6044.9666 kcal/mol (6042.5865 without restraints) Performing minimization step: 3435. Total energy = 6043.6824 kcal/mol (6041.3031 without restraints) Performing minimization step: 3436. Total energy = 6042.3998 kcal/mol (6040.0213 without restraints) Performing minimization step: 3437. Total energy = 6041.1182 kcal/mol (6038.7405 without restraints) Performing minimization step: 3438. Total energy = 6039.8377 kcal/mol (6037.4607 without restraints) Performing minimization step: 3439. Total energy = 6038.5587 kcal/mol (6036.1826 without restraints) Performing minimization step: 3440. Total energy = 6037.2808 kcal/mol (6034.9054 without restraints) Performing minimization step: 3441. Total energy = 6036.0043 kcal/mol (6033.6296 without restraints) Performing minimization step: 3442. Total energy = 6034.7285 kcal/mol (6032.3545 without restraints) Performing minimization step: 3443. Total energy = 6033.4544 kcal/mol (6031.0813 without restraints) Performing minimization step: 3444. Total energy = 6032.1814 kcal/mol (6029.8090 without restraints) Performing minimization step: 3445. Total energy = 6030.9096 kcal/mol (6028.5379 without restraints) Performing minimization step: 3446. Total energy = 6029.6390 kcal/mol (6027.2681 without restraints) Performing minimization step: 3447. Total energy = 6028.3697 kcal/mol (6025.9996 without restraints) Performing minimization step: 3448. Total energy = 6027.1012 kcal/mol (6024.7318 without restraints) Performing minimization step: 3449. Total energy = 6025.8346 kcal/mol (6023.4659 without restraints) Performing minimization step: 3450. Total energy = 6024.5693 kcal/mol (6022.2014 without restraints) Performing minimization step: 3451. Total energy = 6023.3048 kcal/mol (6020.9377 without restraints) Performing minimization step: 3452. Total energy = 6022.0415 kcal/mol (6019.6751 without restraints) Performing minimization step: 3453. Total energy = 6020.7798 kcal/mol (6018.4142 without restraints) Performing minimization step: 3454. Total energy = 6019.5192 kcal/mol (6017.1544 without restraints) Performing minimization step: 3455. Total energy = 6018.2594 kcal/mol (6015.8953 without restraints) Performing minimization step: 3456. Total energy = 6017.0012 kcal/mol (6014.6378 without restraints) Performing minimization step: 3457. Total energy = 6015.7445 kcal/mol (6013.3822 without restraints) Performing minimization step: 3458. Total energy = 6014.4889 kcal/mol (6012.1272 without restraints) Performing minimization step: 3459. Total energy = 6013.2341 kcal/mol (6010.8729 without restraints) Performing minimization step: 3460. Total energy = 6011.9800 kcal/mol (6009.6196 without restraints) Performing minimization step: 3461. Total energy = 6010.7278 kcal/mol (6008.3682 without restraints) Performing minimization step: 3462. Total energy = 6009.4771 kcal/mol (6007.1185 without restraints) Performing minimization step: 3463. Total energy = 6008.2274 kcal/mol (6005.8694 without restraints) Performing minimization step: 3464. Total energy = 6006.9790 kcal/mol (6004.6216 without restraints) Performing minimization step: 3465. Total energy = 6005.7312 kcal/mol (6003.3746 without restraints) Performing minimization step: 3466. Total energy = 6004.4847 kcal/mol (6002.1289 without restraints) Performing minimization step: 3467. Total energy = 6003.2395 kcal/mol (6000.8844 without restraints) Performing minimization step: 3468. Total energy = 6001.9953 kcal/mol (5999.6410 without restraints) Performing minimization step: 3469. Total energy = 6000.7529 kcal/mol (5998.3996 without restraints) Performing minimization step: 3470. Total energy = 5999.5114 kcal/mol (5997.1585 without restraints) Performing minimization step: 3471. Total energy = 5998.2710 kcal/mol (5995.9189 without restraints) Performing minimization step: 3472. Total energy = 5997.0323 kcal/mol (5994.6811 without restraints) Performing minimization step: 3473. Total energy = 5995.7939 kcal/mol (5993.4433 without restraints) Performing minimization step: 3474. Total energy = 5994.5570 kcal/mol (5992.2072 without restraints) Performing minimization step: 3475. Total energy = 5993.3215 kcal/mol (5990.9724 without restraints) Performing minimization step: 3476. Total energy = 5992.0865 kcal/mol (5989.7381 without restraints) Performing minimization step: 3477. Total energy = 5990.8534 kcal/mol (5988.5058 without restraints) Performing minimization step: 3478. Total energy = 5989.6208 kcal/mol (5987.2738 without restraints) Performing minimization step: 3479. Total energy = 5988.3897 kcal/mol (5986.0437 without restraints) Performing minimization step: 3480. Total energy = 5987.1599 kcal/mol (5984.8145 without restraints) Performing minimization step: 3481. Total energy = 5985.9317 kcal/mol (5983.5871 without restraints) Performing minimization step: 3482. Total energy = 5984.7040 kcal/mol (5982.3601 without restraints) Performing minimization step: 3483. Total energy = 5983.4770 kcal/mol (5981.1339 without restraints) Performing minimization step: 3484. Total energy = 5982.2514 kcal/mol (5979.9092 without restraints) Performing minimization step: 3485. Total energy = 5981.0278 kcal/mol (5978.6861 without restraints) Performing minimization step: 3486. Total energy = 5979.8049 kcal/mol (5977.4641 without restraints) Performing minimization step: 3487. Total energy = 5978.5836 kcal/mol (5976.2437 without restraints) Performing minimization step: 3488. Total energy = 5977.3632 kcal/mol (5975.0239 without restraints) Performing minimization step: 3489. Total energy = 5976.1437 kcal/mol (5973.8052 without restraints) Performing minimization step: 3490. Total energy = 5974.9252 kcal/mol (5972.5874 without restraints) Performing minimization step: 3491. Total energy = 5973.7080 kcal/mol (5971.3709 without restraints) Performing minimization step: 3492. Total energy = 5972.4914 kcal/mol (5970.1551 without restraints) Performing minimization step: 3493. Total energy = 5971.2765 kcal/mol (5968.9409 without restraints) Performing minimization step: 3494. Total energy = 5970.0625 kcal/mol (5967.7277 without restraints) Performing minimization step: 3495. Total energy = 5968.8495 kcal/mol (5966.5154 without restraints) Performing minimization step: 3496. Total energy = 5967.6378 kcal/mol (5965.3045 without restraints) Performing minimization step: 3497. Total energy = 5966.4275 kcal/mol (5964.0949 without restraints) Performing minimization step: 3498. Total energy = 5965.2183 kcal/mol (5962.8865 without restraints) Performing minimization step: 3499. Total energy = 5964.0101 kcal/mol (5961.6790 without restraints) Performing minimization step: 3500. Total energy = 5962.8030 kcal/mol (5960.4726 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 5961.5970 kcal/mol (5959.2674 without restraints) Performing minimization step: 3502. Total energy = 5960.3921 kcal/mol (5958.0633 without restraints) Performing minimization step: 3503. Total energy = 5959.1882 kcal/mol (5956.8601 without restraints) Performing minimization step: 3504. Total energy = 5957.9858 kcal/mol (5955.6585 without restraints) Performing minimization step: 3505. Total energy = 5956.7844 kcal/mol (5954.4577 without restraints) Performing minimization step: 3506. Total energy = 5955.5841 kcal/mol (5953.2582 without restraints) Performing minimization step: 3507. Total energy = 5954.3849 kcal/mol (5952.0597 without restraints) Performing minimization step: 3508. Total energy = 5953.1867 kcal/mol (5950.8623 without restraints) Performing minimization step: 3509. Total energy = 5951.9899 kcal/mol (5949.6663 without restraints) Performing minimization step: 3510. Total energy = 5950.7938 kcal/mol (5948.4709 without restraints) Performing minimization step: 3511. Total energy = 5949.5989 kcal/mol (5947.2768 without restraints) Performing minimization step: 3512. Total energy = 5948.4053 kcal/mol (5946.0841 without restraints) Performing minimization step: 3513. Total energy = 5947.2131 kcal/mol (5944.8924 without restraints) Performing minimization step: 3514. Total energy = 5946.0219 kcal/mol (5943.7023 without restraints) Performing minimization step: 3515. Total energy = 5944.8320 kcal/mol (5942.5127 without restraints) Performing minimization step: 3516. Total energy = 5943.6431 kcal/mol (5941.3247 without restraints) Performing minimization step: 3517. Total energy = 5942.4553 kcal/mol (5940.1377 without restraints) Performing minimization step: 3518. Total energy = 5941.2686 kcal/mol (5938.9518 without restraints) Performing minimization step: 3519. Total energy = 5940.0828 kcal/mol (5937.7666 without restraints) Performing minimization step: 3520. Total energy = 5938.8980 kcal/mol (5936.5825 without restraints) Performing minimization step: 3521. Total energy = 5937.7142 kcal/mol (5935.3995 without restraints) Performing minimization step: 3522. Total energy = 5936.5316 kcal/mol (5934.2176 without restraints) Performing minimization step: 3523. Total energy = 5935.3499 kcal/mol (5933.0367 without restraints) Performing minimization step: 3524. Total energy = 5934.1697 kcal/mol (5931.8572 without restraints) Performing minimization step: 3525. Total energy = 5932.9902 kcal/mol (5930.6785 without restraints) Performing minimization step: 3526. Total energy = 5931.8117 kcal/mol (5929.5007 without restraints) Performing minimization step: 3527. Total energy = 5930.6346 kcal/mol (5928.3244 without restraints) Performing minimization step: 3528. Total energy = 5929.4587 kcal/mol (5927.1492 without restraints) Performing minimization step: 3529. Total energy = 5928.2836 kcal/mol (5925.9749 without restraints) Performing minimization step: 3530. Total energy = 5927.1097 kcal/mol (5924.8017 without restraints) Performing minimization step: 3531. Total energy = 5925.9366 kcal/mol (5923.6294 without restraints) Performing minimization step: 3532. Total energy = 5924.7649 kcal/mol (5922.4583 without restraints) Performing minimization step: 3533. Total energy = 5923.5944 kcal/mol (5921.2887 without restraints) Performing minimization step: 3534. Total energy = 5922.4249 kcal/mol (5920.1198 without restraints) Performing minimization step: 3535. Total energy = 5921.2560 kcal/mol (5918.9516 without restraints) Performing minimization step: 3536. Total energy = 5920.0883 kcal/mol (5917.7846 without restraints) Performing minimization step: 3537. Total energy = 5918.9222 kcal/mol (5916.6193 without restraints) Performing minimization step: 3538. Total energy = 5917.7568 kcal/mol (5915.4547 without restraints) Performing minimization step: 3539. Total energy = 5916.5919 kcal/mol (5914.2906 without restraints) Performing minimization step: 3540. Total energy = 5915.4287 kcal/mol (5913.1281 without restraints) Performing minimization step: 3541. Total energy = 5914.2667 kcal/mol (5911.9668 without restraints) Performing minimization step: 3542. Total energy = 5913.1057 kcal/mol (5910.8065 without restraints) Performing minimization step: 3543. Total energy = 5911.9459 kcal/mol (5909.6474 without restraints) Performing minimization step: 3544. Total energy = 5910.7870 kcal/mol (5908.4894 without restraints) Performing minimization step: 3545. Total energy = 5909.6288 kcal/mol (5907.3318 without restraints) Performing minimization step: 3546. Total energy = 5908.4717 kcal/mol (5906.1755 without restraints) Performing minimization step: 3547. Total energy = 5907.3161 kcal/mol (5905.0207 without restraints) Performing minimization step: 3548. Total energy = 5906.1613 kcal/mol (5903.8666 without restraints) Performing minimization step: 3549. Total energy = 5905.0079 kcal/mol (5902.7139 without restraints) Performing minimization step: 3550. Total energy = 5903.8557 kcal/mol (5901.5625 without restraints) Performing minimization step: 3551. Total energy = 5902.7040 kcal/mol (5900.4115 without restraints) Performing minimization step: 3552. Total energy = 5901.5536 kcal/mol (5899.2619 without restraints) Performing minimization step: 3553. Total energy = 5900.4046 kcal/mol (5898.1136 without restraints) Performing minimization step: 3554. Total energy = 5899.2567 kcal/mol (5896.9666 without restraints) Performing minimization step: 3555. Total energy = 5898.1100 kcal/mol (5895.8205 without restraints) Performing minimization step: 3556. Total energy = 5896.9638 kcal/mol (5894.6750 without restraints) Performing minimization step: 3557. Total energy = 5895.8185 kcal/mol (5893.5304 without restraints) Performing minimization step: 3558. Total energy = 5894.6746 kcal/mol (5892.3876 without restraints) Performing minimization step: 3559. Total energy = 5893.5317 kcal/mol (5891.2451 without restraints) Performing minimization step: 3560. Total energy = 5892.3895 kcal/mol (5890.1035 without restraints) Performing minimization step: 3561. Total energy = 5891.2482 kcal/mol (5888.9630 without restraints) Performing minimization step: 3562. Total energy = 5890.1080 kcal/mol (5887.8236 without restraints) Performing minimization step: 3563. Total energy = 5888.9684 kcal/mol (5886.6847 without restraints) Performing minimization step: 3564. Total energy = 5887.8301 kcal/mol (5885.5472 without restraints) Performing minimization step: 3565. Total energy = 5886.6932 kcal/mol (5884.4110 without restraints) Performing minimization step: 3566. Total energy = 5885.5570 kcal/mol (5883.2756 without restraints) Performing minimization step: 3567. Total energy = 5884.4221 kcal/mol (5882.1415 without restraints) Performing minimization step: 3568. Total energy = 5883.2883 kcal/mol (5881.0083 without restraints) Performing minimization step: 3569. Total energy = 5882.1555 kcal/mol (5879.8764 without restraints) Performing minimization step: 3570. Total energy = 5881.0239 kcal/mol (5878.7454 without restraints) Performing minimization step: 3571. Total energy = 5879.8928 kcal/mol (5877.6150 without restraints) Performing minimization step: 3572. Total energy = 5878.7627 kcal/mol (5876.4856 without restraints) Performing minimization step: 3573. Total energy = 5877.6337 kcal/mol (5875.3573 without restraints) Performing minimization step: 3574. Total energy = 5876.5059 kcal/mol (5874.2302 without restraints) Performing minimization step: 3575. Total energy = 5875.3786 kcal/mol (5873.1037 without restraints) Performing minimization step: 3576. Total energy = 5874.2530 kcal/mol (5871.9789 without restraints) Performing minimization step: 3577. Total energy = 5873.1282 kcal/mol (5870.8548 without restraints) Performing minimization step: 3578. Total energy = 5872.0041 kcal/mol (5869.7315 without restraints) Performing minimization step: 3579. Total energy = 5870.8817 kcal/mol (5868.6099 without restraints) Performing minimization step: 3580. Total energy = 5869.7600 kcal/mol (5867.4888 without restraints) Performing minimization step: 3581. Total energy = 5868.6397 kcal/mol (5866.3693 without restraints) Performing minimization step: 3582. Total energy = 5867.5199 kcal/mol (5865.2502 without restraints) Performing minimization step: 3583. Total energy = 5866.4010 kcal/mol (5864.1321 without restraints) Performing minimization step: 3584. Total energy = 5865.2836 kcal/mol (5863.0153 without restraints) Performing minimization step: 3585. Total energy = 5864.1668 kcal/mol (5861.8992 without restraints) Performing minimization step: 3586. Total energy = 5863.0509 kcal/mol (5860.7841 without restraints) Performing minimization step: 3587. Total energy = 5861.9361 kcal/mol (5859.6701 without restraints) Performing minimization step: 3588. Total energy = 5860.8224 kcal/mol (5858.5570 without restraints) Performing minimization step: 3589. Total energy = 5859.7099 kcal/mol (5857.4453 without restraints) Performing minimization step: 3590. Total energy = 5858.5981 kcal/mol (5856.3342 without restraints) Performing minimization step: 3591. Total energy = 5857.4877 kcal/mol (5855.2245 without restraints) Performing minimization step: 3592. Total energy = 5856.3782 kcal/mol (5854.1157 without restraints) Performing minimization step: 3593. Total energy = 5855.2691 kcal/mol (5853.0075 without restraints) Performing minimization step: 3594. Total energy = 5854.1615 kcal/mol (5851.9005 without restraints) Performing minimization step: 3595. Total energy = 5853.0547 kcal/mol (5850.7946 without restraints) Performing minimization step: 3596. Total energy = 5851.9488 kcal/mol (5849.6893 without restraints) Performing minimization step: 3597. Total energy = 5850.8439 kcal/mol (5848.5851 without restraints) Performing minimization step: 3598. Total energy = 5849.7397 kcal/mol (5847.4817 without restraints) Performing minimization step: 3599. Total energy = 5848.6377 kcal/mol (5846.3805 without restraints) Performing minimization step: 3600. Total energy = 5847.5364 kcal/mol (5845.2800 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 5846.4356 kcal/mol (5844.1798 without restraints) Performing minimization step: 3602. Total energy = 5845.3355 kcal/mol (5843.0804 without restraints) Performing minimization step: 3603. Total energy = 5844.2366 kcal/mol (5841.9822 without restraints) Performing minimization step: 3604. Total energy = 5843.1389 kcal/mol (5840.8852 without restraints) Performing minimization step: 3605. Total energy = 5842.0423 kcal/mol (5839.7894 without restraints) Performing minimization step: 3606. Total energy = 5840.9464 kcal/mol (5838.6942 without restraints) Performing minimization step: 3607. Total energy = 5839.8519 kcal/mol (5837.6004 without restraints) Performing minimization step: 3608. Total energy = 5838.7577 kcal/mol (5836.5069 without restraints) Performing minimization step: 3609. Total energy = 5837.6646 kcal/mol (5835.4146 without restraints) Performing minimization step: 3610. Total energy = 5836.5727 kcal/mol (5834.3235 without restraints) Performing minimization step: 3611. Total energy = 5835.4817 kcal/mol (5833.2333 without restraints) Performing minimization step: 3612. Total energy = 5834.3913 kcal/mol (5832.1434 without restraints) Performing minimization step: 3613. Total energy = 5833.3020 kcal/mol (5831.0550 without restraints) Performing minimization step: 3614. Total energy = 5832.2137 kcal/mol (5829.9673 without restraints) Performing minimization step: 3615. Total energy = 5831.1265 kcal/mol (5828.8808 without restraints) Performing minimization step: 3616. Total energy = 5830.0399 kcal/mol (5827.7949 without restraints) Performing minimization step: 3617. Total energy = 5828.9544 kcal/mol (5826.7102 without restraints) Performing minimization step: 3618. Total energy = 5827.8699 kcal/mol (5825.6264 without restraints) Performing minimization step: 3619. Total energy = 5826.7870 kcal/mol (5824.5442 without restraints) Performing minimization step: 3620. Total energy = 5825.7042 kcal/mol (5823.4621 without restraints) Performing minimization step: 3621. Total energy = 5824.6228 kcal/mol (5822.3815 without restraints) Performing minimization step: 3622. Total energy = 5823.5421 kcal/mol (5821.3016 without restraints) Performing minimization step: 3623. Total energy = 5822.4622 kcal/mol (5820.2224 without restraints) Performing minimization step: 3624. Total energy = 5821.3836 kcal/mol (5819.1446 without restraints) Performing minimization step: 3625. Total energy = 5820.3058 kcal/mol (5818.0674 without restraints) Performing minimization step: 3626. Total energy = 5819.2292 kcal/mol (5816.9915 without restraints) Performing minimization step: 3627. Total energy = 5818.1531 kcal/mol (5815.9161 without restraints) Performing minimization step: 3628. Total energy = 5817.0782 kcal/mol (5814.8422 without restraints) Performing minimization step: 3629. Total energy = 5816.0043 kcal/mol (5813.7687 without restraints) Performing minimization step: 3630. Total energy = 5814.9312 kcal/mol (5812.6964 without restraints) Performing minimization step: 3631. Total energy = 5813.8587 kcal/mol (5811.6246 without restraints) Performing minimization step: 3632. Total energy = 5812.7873 kcal/mol (5810.5539 without restraints) Performing minimization step: 3633. Total energy = 5811.7167 kcal/mol (5809.4840 without restraints) Performing minimization step: 3634. Total energy = 5810.6471 kcal/mol (5808.4152 without restraints) Performing minimization step: 3635. Total energy = 5809.5783 kcal/mol (5807.3470 without restraints) Performing minimization step: 3636. Total energy = 5808.5104 kcal/mol (5806.2799 without restraints) Performing minimization step: 3637. Total energy = 5807.4439 kcal/mol (5805.2141 without restraints) Performing minimization step: 3638. Total energy = 5806.3782 kcal/mol (5804.1491 without restraints) Performing minimization step: 3639. Total energy = 5805.3132 kcal/mol (5803.0848 without restraints) Performing minimization step: 3640. Total energy = 5804.2489 kcal/mol (5802.0212 without restraints) Performing minimization step: 3641. Total energy = 5803.1856 kcal/mol (5800.9587 without restraints) Performing minimization step: 3642. Total energy = 5802.1236 kcal/mol (5799.8974 without restraints) Performing minimization step: 3643. Total energy = 5801.0624 kcal/mol (5798.8370 without restraints) Performing minimization step: 3644. Total energy = 5800.0020 kcal/mol (5797.7773 without restraints) Performing minimization step: 3645. Total energy = 5798.9425 kcal/mol (5796.7185 without restraints) Performing minimization step: 3646. Total energy = 5797.8837 kcal/mol (5795.6605 without restraints) Performing minimization step: 3647. Total energy = 5796.8266 kcal/mol (5794.6041 without restraints) Performing minimization step: 3648. Total energy = 5795.7701 kcal/mol (5793.5483 without restraints) Performing minimization step: 3649. Total energy = 5794.7147 kcal/mol (5792.4936 without restraints) Performing minimization step: 3650. Total energy = 5793.6603 kcal/mol (5791.4399 without restraints) Performing minimization step: 3651. Total energy = 5792.6067 kcal/mol (5790.3870 without restraints) Performing minimization step: 3652. Total energy = 5791.5539 kcal/mol (5789.3350 without restraints) Performing minimization step: 3653. Total energy = 5790.5020 kcal/mol (5788.2838 without restraints) Performing minimization step: 3654. Total energy = 5789.4508 kcal/mol (5787.2333 without restraints) Performing minimization step: 3655. Total energy = 5788.4005 kcal/mol (5786.1836 without restraints) Performing minimization step: 3656. Total energy = 5787.3511 kcal/mol (5785.1351 without restraints) Performing minimization step: 3657. Total energy = 5786.3026 kcal/mol (5784.0872 without restraints) Performing minimization step: 3658. Total energy = 5785.2550 kcal/mol (5783.0404 without restraints) Performing minimization step: 3659. Total energy = 5784.2089 kcal/mol (5781.9949 without restraints) Performing minimization step: 3660. Total energy = 5783.1630 kcal/mol (5780.9497 without restraints) Performing minimization step: 3661. Total energy = 5782.1178 kcal/mol (5779.9053 without restraints) Performing minimization step: 3662. Total energy = 5781.0740 kcal/mol (5778.8621 without restraints) Performing minimization step: 3663. Total energy = 5780.0307 kcal/mol (5777.8197 without restraints) Performing minimization step: 3664. Total energy = 5778.9889 kcal/mol (5776.7785 without restraints) Performing minimization step: 3665. Total energy = 5777.9473 kcal/mol (5775.7377 without restraints) Performing minimization step: 3666. Total energy = 5776.9068 kcal/mol (5774.6979 without restraints) Performing minimization step: 3667. Total energy = 5775.8677 kcal/mol (5773.6595 without restraints) Performing minimization step: 3668. Total energy = 5774.8287 kcal/mol (5772.6214 without restraints) Performing minimization step: 3669. Total energy = 5773.7913 kcal/mol (5771.5845 without restraints) Performing minimization step: 3670. Total energy = 5772.7542 kcal/mol (5770.5481 without restraints) Performing minimization step: 3671. Total energy = 5771.7184 kcal/mol (5769.5131 without restraints) Performing minimization step: 3672. Total energy = 5770.6834 kcal/mol (5768.4788 without restraints) Performing minimization step: 3673. Total energy = 5769.6491 kcal/mol (5767.4451 without restraints) Performing minimization step: 3674. Total energy = 5768.6162 kcal/mol (5766.4130 without restraints) Performing minimization step: 3675. Total energy = 5767.5840 kcal/mol (5765.3815 without restraints) Performing minimization step: 3676. Total energy = 5766.5525 kcal/mol (5764.3507 without restraints) Performing minimization step: 3677. Total energy = 5765.5220 kcal/mol (5763.3209 without restraints) Performing minimization step: 3678. Total energy = 5764.4922 kcal/mol (5762.2918 without restraints) Performing minimization step: 3679. Total energy = 5763.4628 kcal/mol (5761.2631 without restraints) Performing minimization step: 3680. Total energy = 5762.4347 kcal/mol (5760.2359 without restraints) Performing minimization step: 3681. Total energy = 5761.4080 kcal/mol (5759.2097 without restraints) Performing minimization step: 3682. Total energy = 5760.3812 kcal/mol (5758.1837 without restraints) Performing minimization step: 3683. Total energy = 5759.3560 kcal/mol (5757.1592 without restraints) Performing minimization step: 3684. Total energy = 5758.3315 kcal/mol (5756.1357 without restraints) Performing minimization step: 3685. Total energy = 5757.3081 kcal/mol (5755.1127 without restraints) Performing minimization step: 3686. Total energy = 5756.2852 kcal/mol (5754.0905 without restraints) Performing minimization step: 3687. Total energy = 5755.2629 kcal/mol (5753.0690 without restraints) Performing minimization step: 3688. Total energy = 5754.2419 kcal/mol (5752.0487 without restraints) Performing minimization step: 3689. Total energy = 5753.2217 kcal/mol (5751.0292 without restraints) Performing minimization step: 3690. Total energy = 5752.2027 kcal/mol (5750.0110 without restraints) Performing minimization step: 3691. Total energy = 5751.1840 kcal/mol (5748.9928 without restraints) Performing minimization step: 3692. Total energy = 5750.1663 kcal/mol (5747.9761 without restraints) Performing minimization step: 3693. Total energy = 5749.1493 kcal/mol (5746.9596 without restraints) Performing minimization step: 3694. Total energy = 5748.1335 kcal/mol (5745.9445 without restraints) Performing minimization step: 3695. Total energy = 5747.1184 kcal/mol (5744.9302 without restraints) Performing minimization step: 3696. Total energy = 5746.1042 kcal/mol (5743.9167 without restraints) Performing minimization step: 3697. Total energy = 5745.0908 kcal/mol (5742.9041 without restraints) Performing minimization step: 3698. Total energy = 5744.0782 kcal/mol (5741.8921 without restraints) Performing minimization step: 3699. Total energy = 5743.0662 kcal/mol (5740.8807 without restraints) Performing minimization step: 3700. Total energy = 5742.0552 kcal/mol (5739.8705 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 5741.0453 kcal/mol (5738.8615 without restraints) Performing minimization step: 3702. Total energy = 5740.0362 kcal/mol (5737.8529 without restraints) Performing minimization step: 3703. Total energy = 5739.0277 kcal/mol (5736.8451 without restraints) Performing minimization step: 3704. Total energy = 5738.0201 kcal/mol (5735.8383 without restraints) Performing minimization step: 3705. Total energy = 5737.0136 kcal/mol (5734.8324 without restraints) Performing minimization step: 3706. Total energy = 5736.0079 kcal/mol (5733.8274 without restraints) Performing minimization step: 3707. Total energy = 5735.0027 kcal/mol (5732.8230 without restraints) Performing minimization step: 3708. Total energy = 5733.9985 kcal/mol (5731.8194 without restraints) Performing minimization step: 3709. Total energy = 5732.9953 kcal/mol (5730.8169 without restraints) Performing minimization step: 3710. Total energy = 5731.9929 kcal/mol (5729.8152 without restraints) Performing minimization step: 3711. Total energy = 5730.9912 kcal/mol (5728.8143 without restraints) Performing minimization step: 3712. Total energy = 5729.9905 kcal/mol (5727.8144 without restraints) Performing minimization step: 3713. Total energy = 5728.9905 kcal/mol (5726.8150 without restraints) Performing minimization step: 3714. Total energy = 5727.9914 kcal/mol (5725.8166 without restraints) Performing minimization step: 3715. Total energy = 5726.9932 kcal/mol (5724.8191 without restraints) Performing minimization step: 3716. Total energy = 5725.9959 kcal/mol (5723.8225 without restraints) Performing minimization step: 3717. Total energy = 5724.9991 kcal/mol (5722.8264 without restraints) Performing minimization step: 3718. Total energy = 5724.0033 kcal/mol (5721.8313 without restraints) Performing minimization step: 3719. Total energy = 5723.0092 kcal/mol (5720.8379 without restraints) Performing minimization step: 3720. Total energy = 5722.0152 kcal/mol (5719.8447 without restraints) Performing minimization step: 3721. Total energy = 5721.0219 kcal/mol (5718.8521 without restraints) Performing minimization step: 3722. Total energy = 5720.0298 kcal/mol (5717.8606 without restraints) Performing minimization step: 3723. Total energy = 5719.0381 kcal/mol (5716.8696 without restraints) Performing minimization step: 3724. Total energy = 5718.0471 kcal/mol (5715.8795 without restraints) Performing minimization step: 3725. Total energy = 5717.0571 kcal/mol (5714.8900 without restraints) Performing minimization step: 3726. Total energy = 5716.0678 kcal/mol (5713.9015 without restraints) Performing minimization step: 3727. Total energy = 5715.0798 kcal/mol (5712.9141 without restraints) Performing minimization step: 3728. Total energy = 5714.0924 kcal/mol (5711.9277 without restraints) Performing minimization step: 3729. Total energy = 5713.1058 kcal/mol (5710.9416 without restraints) Performing minimization step: 3730. Total energy = 5712.1197 kcal/mol (5709.9561 without restraints) Performing minimization step: 3731. Total energy = 5711.1348 kcal/mol (5708.9720 without restraints) Performing minimization step: 3732. Total energy = 5710.1504 kcal/mol (5707.9882 without restraints) Performing minimization step: 3733. Total energy = 5709.1665 kcal/mol (5707.0051 without restraints) Performing minimization step: 3734. Total energy = 5708.1842 kcal/mol (5706.0235 without restraints) Performing minimization step: 3735. Total energy = 5707.2022 kcal/mol (5705.0422 without restraints) Performing minimization step: 3736. Total energy = 5706.2210 kcal/mol (5704.0616 without restraints) Performing minimization step: 3737. Total energy = 5705.2406 kcal/mol (5703.0820 without restraints) Performing minimization step: 3738. Total energy = 5704.2610 kcal/mol (5702.1031 without restraints) Performing minimization step: 3739. Total energy = 5703.2822 kcal/mol (5701.1249 without restraints) Performing minimization step: 3740. Total energy = 5702.3044 kcal/mol (5700.1480 without restraints) Performing minimization step: 3741. Total energy = 5701.3273 kcal/mol (5699.1714 without restraints) Performing minimization step: 3742. Total energy = 5700.3517 kcal/mol (5698.1966 without restraints) Performing minimization step: 3743. Total energy = 5699.3759 kcal/mol (5697.2214 without restraints) Performing minimization step: 3744. Total energy = 5698.4011 kcal/mol (5696.2475 without restraints) Performing minimization step: 3745. Total energy = 5697.4275 kcal/mol (5695.2744 without restraints) Performing minimization step: 3746. Total energy = 5696.4547 kcal/mol (5694.3023 without restraints) Performing minimization step: 3747. Total energy = 5695.4821 kcal/mol (5693.3304 without restraints) Performing minimization step: 3748. Total energy = 5694.5108 kcal/mol (5692.3598 without restraints) Performing minimization step: 3749. Total energy = 5693.5399 kcal/mol (5691.3894 without restraints) Performing minimization step: 3750. Total energy = 5692.5698 kcal/mol (5690.4203 without restraints) Performing minimization step: 3751. Total energy = 5691.6004 kcal/mol (5689.4516 without restraints) Performing minimization step: 3752. Total energy = 5690.6320 kcal/mol (5688.4839 without restraints) Performing minimization step: 3753. Total energy = 5689.6645 kcal/mol (5687.5171 without restraints) Performing minimization step: 3754. Total energy = 5688.6983 kcal/mol (5686.5516 without restraints) Performing minimization step: 3755. Total energy = 5687.7322 kcal/mol (5685.5862 without restraints) Performing minimization step: 3756. Total energy = 5686.7673 kcal/mol (5684.6220 without restraints) Performing minimization step: 3757. Total energy = 5685.8031 kcal/mol (5683.6584 without restraints) Performing minimization step: 3758. Total energy = 5684.8394 kcal/mol (5682.6954 without restraints) Performing minimization step: 3759. Total energy = 5683.8762 kcal/mol (5681.7329 without restraints) Performing minimization step: 3760. Total energy = 5682.9141 kcal/mol (5680.7716 without restraints) Performing minimization step: 3761. Total energy = 5681.9525 kcal/mol (5679.8107 without restraints) Performing minimization step: 3762. Total energy = 5680.9918 kcal/mol (5678.8507 without restraints) Performing minimization step: 3763. Total energy = 5680.0322 kcal/mol (5677.8919 without restraints) Performing minimization step: 3764. Total energy = 5679.0736 kcal/mol (5676.9338 without restraints) Performing minimization step: 3765. Total energy = 5678.1153 kcal/mol (5675.9762 without restraints) Performing minimization step: 3766. Total energy = 5677.1581 kcal/mol (5675.0196 without restraints) Performing minimization step: 3767. Total energy = 5676.2013 kcal/mol (5674.0636 without restraints) Performing minimization step: 3768. Total energy = 5675.2456 kcal/mol (5673.1086 without restraints) Performing minimization step: 3769. Total energy = 5674.2904 kcal/mol (5672.1540 without restraints) Performing minimization step: 3770. Total energy = 5673.3358 kcal/mol (5671.2001 without restraints) Performing minimization step: 3771. Total energy = 5672.3821 kcal/mol (5670.2472 without restraints) Performing minimization step: 3772. Total energy = 5671.4291 kcal/mol (5669.2949 without restraints) Performing minimization step: 3773. Total energy = 5670.4770 kcal/mol (5668.3434 without restraints) Performing minimization step: 3774. Total energy = 5669.5254 kcal/mol (5667.3925 without restraints) Performing minimization step: 3775. Total energy = 5668.5745 kcal/mol (5666.4423 without restraints) Performing minimization step: 3776. Total energy = 5667.6250 kcal/mol (5665.4937 without restraints) Performing minimization step: 3777. Total energy = 5666.6762 kcal/mol (5664.5454 without restraints) Performing minimization step: 3778. Total energy = 5665.7283 kcal/mol (5663.5982 without restraints) Performing minimization step: 3779. Total energy = 5664.7808 kcal/mol (5662.6515 without restraints) Performing minimization step: 3780. Total energy = 5663.8339 kcal/mol (5661.7051 without restraints) Performing minimization step: 3781. Total energy = 5662.8877 kcal/mol (5660.7597 without restraints) Performing minimization step: 3782. Total energy = 5661.9425 kcal/mol (5659.8152 without restraints) Performing minimization step: 3783. Total energy = 5660.9980 kcal/mol (5658.8715 without restraints) Performing minimization step: 3784. Total energy = 5660.0550 kcal/mol (5657.9291 without restraints) Performing minimization step: 3785. Total energy = 5659.1120 kcal/mol (5656.9867 without restraints) Performing minimization step: 3786. Total energy = 5658.1700 kcal/mol (5656.0455 without restraints) Performing minimization step: 3787. Total energy = 5657.2286 kcal/mol (5655.1047 without restraints) Performing minimization step: 3788. Total energy = 5656.2875 kcal/mol (5654.1643 without restraints) Performing minimization step: 3789. Total energy = 5655.3474 kcal/mol (5653.2250 without restraints) Performing minimization step: 3790. Total energy = 5654.4082 kcal/mol (5652.2864 without restraints) Performing minimization step: 3791. Total energy = 5653.4702 kcal/mol (5651.3491 without restraints) Performing minimization step: 3792. Total energy = 5652.5324 kcal/mol (5650.4120 without restraints) Performing minimization step: 3793. Total energy = 5651.5956 kcal/mol (5649.4759 without restraints) Performing minimization step: 3794. Total energy = 5650.6597 kcal/mol (5648.5407 without restraints) Performing minimization step: 3795. Total energy = 5649.7244 kcal/mol (5647.6060 without restraints) Performing minimization step: 3796. Total energy = 5648.7896 kcal/mol (5646.6720 without restraints) Performing minimization step: 3797. Total energy = 5647.8559 kcal/mol (5645.7390 without restraints) Performing minimization step: 3798. Total energy = 5646.9226 kcal/mol (5644.8064 without restraints) Performing minimization step: 3799. Total energy = 5645.9895 kcal/mol (5643.8738 without restraints) Performing minimization step: 3800. Total energy = 5645.0578 kcal/mol (5642.9431 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 5644.1270 kcal/mol (5642.0128 without restraints) Performing minimization step: 3802. Total energy = 5643.1970 kcal/mol (5641.0834 without restraints) Performing minimization step: 3803. Total energy = 5642.2676 kcal/mol (5640.1548 without restraints) Performing minimization step: 3804. Total energy = 5641.3388 kcal/mol (5639.2266 without restraints) Performing minimization step: 3805. Total energy = 5640.4107 kcal/mol (5638.2992 without restraints) Performing minimization step: 3806. Total energy = 5639.4833 kcal/mol (5637.3725 without restraints) Performing minimization step: 3807. Total energy = 5638.5572 kcal/mol (5636.4472 without restraints) Performing minimization step: 3808. Total energy = 5637.6316 kcal/mol (5635.5222 without restraints) Performing minimization step: 3809. Total energy = 5636.7064 kcal/mol (5634.5976 without restraints) Performing minimization step: 3810. Total energy = 5635.7822 kcal/mol (5633.6743 without restraints) Performing minimization step: 3811. Total energy = 5634.8588 kcal/mol (5632.7515 without restraints) Performing minimization step: 3812. Total energy = 5633.9359 kcal/mol (5631.8293 without restraints) Performing minimization step: 3813. Total energy = 5633.0136 kcal/mol (5630.9075 without restraints) Performing minimization step: 3814. Total energy = 5632.0917 kcal/mol (5629.9864 without restraints) Performing minimization step: 3815. Total energy = 5631.1710 kcal/mol (5629.0665 without restraints) Performing minimization step: 3816. Total energy = 5630.2510 kcal/mol (5628.1471 without restraints) Performing minimization step: 3817. Total energy = 5629.3320 kcal/mol (5627.2288 without restraints) Performing minimization step: 3818. Total energy = 5628.4134 kcal/mol (5626.3109 without restraints) Performing minimization step: 3819. Total energy = 5627.4955 kcal/mol (5625.3936 without restraints) Performing minimization step: 3820. Total energy = 5626.5783 kcal/mol (5624.4771 without restraints) Performing minimization step: 3821. Total energy = 5625.6619 kcal/mol (5623.5614 without restraints) Performing minimization step: 3822. Total energy = 5624.7468 kcal/mol (5622.6470 without restraints) Performing minimization step: 3823. Total energy = 5623.8320 kcal/mol (5621.7330 without restraints) Performing minimization step: 3824. Total energy = 5622.9180 kcal/mol (5620.8196 without restraints) Performing minimization step: 3825. Total energy = 5622.0046 kcal/mol (5619.9068 without restraints) Performing minimization step: 3826. Total energy = 5621.0915 kcal/mol (5618.9944 without restraints) Performing minimization step: 3827. Total energy = 5620.1792 kcal/mol (5618.0828 without restraints) Performing minimization step: 3828. Total energy = 5619.2678 kcal/mol (5617.1722 without restraints) Performing minimization step: 3829. Total energy = 5618.3571 kcal/mol (5616.2619 without restraints) Performing minimization step: 3830. Total energy = 5617.4472 kcal/mol (5615.3528 without restraints) Performing minimization step: 3831. Total energy = 5616.5379 kcal/mol (5614.4443 without restraints) Performing minimization step: 3832. Total energy = 5615.6295 kcal/mol (5613.5365 without restraints) Performing minimization step: 3833. Total energy = 5614.7215 kcal/mol (5612.6292 without restraints) Performing minimization step: 3834. Total energy = 5613.8143 kcal/mol (5611.7226 without restraints) Performing minimization step: 3835. Total energy = 5612.9078 kcal/mol (5610.8168 without restraints) Performing minimization step: 3836. Total energy = 5612.0021 kcal/mol (5609.9118 without restraints) Performing minimization step: 3837. Total energy = 5611.0970 kcal/mol (5609.0074 without restraints) Performing minimization step: 3838. Total energy = 5610.1926 kcal/mol (5608.1037 without restraints) Performing minimization step: 3839. Total energy = 5609.2887 kcal/mol (5607.2005 without restraints) Performing minimization step: 3840. Total energy = 5608.3857 kcal/mol (5606.2981 without restraints) Performing minimization step: 3841. Total energy = 5607.4839 kcal/mol (5605.3969 without restraints) Performing minimization step: 3842. Total energy = 5606.5823 kcal/mol (5604.4961 without restraints) Performing minimization step: 3843. Total energy = 5605.6815 kcal/mol (5603.5961 without restraints) Performing minimization step: 3844. Total energy = 5604.7814 kcal/mol (5602.6966 without restraints) Performing minimization step: 3845. Total energy = 5603.8819 kcal/mol (5601.7977 without restraints) Performing minimization step: 3846. Total energy = 5602.9835 kcal/mol (5600.9000 without restraints) Performing minimization step: 3847. Total energy = 5602.0854 kcal/mol (5600.0026 without restraints) Performing minimization step: 3848. Total energy = 5601.1882 kcal/mol (5599.1061 without restraints) Performing minimization step: 3849. Total energy = 5600.2916 kcal/mol (5598.2101 without restraints) Performing minimization step: 3850. Total energy = 5599.3956 kcal/mol (5597.3148 without restraints) Performing minimization step: 3851. Total energy = 5598.5006 kcal/mol (5596.4205 without restraints) Performing minimization step: 3852. Total energy = 5597.6064 kcal/mol (5595.5270 without restraints) Performing minimization step: 3853. Total energy = 5596.7119 kcal/mol (5594.6331 without restraints) Performing minimization step: 3854. Total energy = 5595.8185 kcal/mol (5593.7405 without restraints) Performing minimization step: 3855. Total energy = 5594.9266 kcal/mol (5592.8492 without restraints) Performing minimization step: 3856. Total energy = 5594.0347 kcal/mol (5591.9579 without restraints) Performing minimization step: 3857. Total energy = 5593.1435 kcal/mol (5591.0674 without restraints) Performing minimization step: 3858. Total energy = 5592.2530 kcal/mol (5590.1777 without restraints) Performing minimization step: 3859. Total energy = 5591.3634 kcal/mol (5589.2887 without restraints) Performing minimization step: 3860. Total energy = 5590.4743 kcal/mol (5588.4003 without restraints) Performing minimization step: 3861. Total energy = 5589.5859 kcal/mol (5587.5126 without restraints) Performing minimization step: 3862. Total energy = 5588.6989 kcal/mol (5586.6265 without restraints) Performing minimization step: 3863. Total energy = 5587.8123 kcal/mol (5585.7403 without restraints) Performing minimization step: 3864. Total energy = 5586.9260 kcal/mol (5584.8547 without restraints) Performing minimization step: 3865. Total energy = 5586.0405 kcal/mol (5583.9701 without restraints) Performing minimization step: 3866. Total energy = 5585.1559 kcal/mol (5583.0859 without restraints) Performing minimization step: 3867. Total energy = 5584.2716 kcal/mol (5582.2023 without restraints) Performing minimization step: 3868. Total energy = 5583.3877 kcal/mol (5581.3191 without restraints) Performing minimization step: 3869. Total energy = 5582.5048 kcal/mol (5580.4368 without restraints) Performing minimization step: 3870. Total energy = 5581.6225 kcal/mol (5579.5551 without restraints) Performing minimization step: 3871. Total energy = 5580.7409 kcal/mol (5578.6744 without restraints) Performing minimization step: 3872. Total energy = 5579.8603 kcal/mol (5577.7944 without restraints) Performing minimization step: 3873. Total energy = 5578.9799 kcal/mol (5576.9146 without restraints) Performing minimization step: 3874. Total energy = 5578.1007 kcal/mol (5576.0360 without restraints) Performing minimization step: 3875. Total energy = 5577.2221 kcal/mol (5575.1582 without restraints) Performing minimization step: 3876. Total energy = 5576.3439 kcal/mol (5574.2807 without restraints) Performing minimization step: 3877. Total energy = 5575.4666 kcal/mol (5573.4040 without restraints) Performing minimization step: 3878. Total energy = 5574.5903 kcal/mol (5572.5284 without restraints) Performing minimization step: 3879. Total energy = 5573.7140 kcal/mol (5571.6527 without restraints) Performing minimization step: 3880. Total energy = 5572.8385 kcal/mol (5570.7779 without restraints) Performing minimization step: 3881. Total energy = 5571.9640 kcal/mol (5569.9040 without restraints) Performing minimization step: 3882. Total energy = 5571.0895 kcal/mol (5569.0302 without restraints) Performing minimization step: 3883. Total energy = 5570.2161 kcal/mol (5568.1575 without restraints) Performing minimization step: 3884. Total energy = 5569.3433 kcal/mol (5567.2853 without restraints) Performing minimization step: 3885. Total energy = 5568.4711 kcal/mol (5566.4140 without restraints) Performing minimization step: 3886. Total energy = 5567.6000 kcal/mol (5565.5436 without restraints) Performing minimization step: 3887. Total energy = 5566.7292 kcal/mol (5564.6732 without restraints) Performing minimization step: 3888. Total energy = 5565.8589 kcal/mol (5563.8038 without restraints) Performing minimization step: 3889. Total energy = 5564.9888 kcal/mol (5562.9342 without restraints) Performing minimization step: 3890. Total energy = 5564.1193 kcal/mol (5562.0654 without restraints) Performing minimization step: 3891. Total energy = 5563.2512 kcal/mol (5561.1979 without restraints) Performing minimization step: 3892. Total energy = 5562.3834 kcal/mol (5560.3309 without restraints) Performing minimization step: 3893. Total energy = 5561.5166 kcal/mol (5559.4647 without restraints) Performing minimization step: 3894. Total energy = 5560.6506 kcal/mol (5558.5994 without restraints) Performing minimization step: 3895. Total energy = 5559.7847 kcal/mol (5557.7341 without restraints) Performing minimization step: 3896. Total energy = 5558.9192 kcal/mol (5556.8693 without restraints) Performing minimization step: 3897. Total energy = 5558.0550 kcal/mol (5556.0059 without restraints) Performing minimization step: 3898. Total energy = 5557.1911 kcal/mol (5555.1425 without restraints) Performing minimization step: 3899. Total energy = 5556.3280 kcal/mol (5554.2800 without restraints) Performing minimization step: 3900. Total energy = 5555.4655 kcal/mol (5553.4182 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 5554.6036 kcal/mol (5552.5569 without restraints) Performing minimization step: 3902. Total energy = 5553.7425 kcal/mol (5551.6966 without restraints) Performing minimization step: 3903. Total energy = 5552.8822 kcal/mol (5550.8369 without restraints) Performing minimization step: 3904. Total energy = 5552.0223 kcal/mol (5549.9777 without restraints) Performing minimization step: 3905. Total energy = 5551.1631 kcal/mol (5549.1191 without restraints) Performing minimization step: 3906. Total energy = 5550.3052 kcal/mol (5548.2619 without restraints) Performing minimization step: 3907. Total energy = 5549.4475 kcal/mol (5547.4049 without restraints) Performing minimization step: 3908. Total energy = 5548.5904 kcal/mol (5546.5485 without restraints) Performing minimization step: 3909. Total energy = 5547.7336 kcal/mol (5545.6923 without restraints) Performing minimization step: 3910. Total energy = 5546.8783 kcal/mol (5544.8378 without restraints) Performing minimization step: 3911. Total energy = 5546.0242 kcal/mol (5543.9843 without restraints) Performing minimization step: 3912. Total energy = 5545.1695 kcal/mol (5543.1302 without restraints) Performing minimization step: 3913. Total energy = 5544.3157 kcal/mol (5542.2771 without restraints) Performing minimization step: 3914. Total energy = 5543.4623 kcal/mol (5541.4244 without restraints) Performing minimization step: 3915. Total energy = 5542.6097 kcal/mol (5540.5723 without restraints) Performing minimization step: 3916. Total energy = 5541.7574 kcal/mol (5539.7208 without restraints) Performing minimization step: 3917. Total energy = 5540.9060 kcal/mol (5538.8700 without restraints) Performing minimization step: 3918. Total energy = 5540.0549 kcal/mol (5538.0196 without restraints) Performing minimization step: 3919. Total energy = 5539.2047 kcal/mol (5537.1700 without restraints) Performing minimization step: 3920. Total energy = 5538.3555 kcal/mol (5536.3215 without restraints) Performing minimization step: 3921. Total energy = 5537.5064 kcal/mol (5535.4731 without restraints) Performing minimization step: 3922. Total energy = 5536.6577 kcal/mol (5534.6250 without restraints) Performing minimization step: 3923. Total energy = 5535.8099 kcal/mol (5533.7778 without restraints) Performing minimization step: 3924. Total energy = 5534.9630 kcal/mol (5532.9316 without restraints) Performing minimization step: 3925. Total energy = 5534.1167 kcal/mol (5532.0860 without restraints) Performing minimization step: 3926. Total energy = 5533.2708 kcal/mol (5531.2409 without restraints) Performing minimization step: 3927. Total energy = 5532.4257 kcal/mol (5530.3963 without restraints) Performing minimization step: 3928. Total energy = 5531.5816 kcal/mol (5529.5528 without restraints) Performing minimization step: 3929. Total energy = 5530.7379 kcal/mol (5528.7099 without restraints) Performing minimization step: 3930. Total energy = 5529.8949 kcal/mol (5527.8675 without restraints) Performing minimization step: 3931. Total energy = 5529.0529 kcal/mol (5527.0261 without restraints) Performing minimization step: 3932. Total energy = 5528.2117 kcal/mol (5526.1856 without restraints) Performing minimization step: 3933. Total energy = 5527.3705 kcal/mol (5525.3451 without restraints) Performing minimization step: 3934. Total energy = 5526.5300 kcal/mol (5524.5052 without restraints) Performing minimization step: 3935. Total energy = 5525.6898 kcal/mol (5523.6656 without restraints) Performing minimization step: 3936. Total energy = 5524.8502 kcal/mol (5522.8267 without restraints) Performing minimization step: 3937. Total energy = 5524.0115 kcal/mol (5521.9886 without restraints) Performing minimization step: 3938. Total energy = 5523.1737 kcal/mol (5521.1516 without restraints) Performing minimization step: 3939. Total energy = 5522.3362 kcal/mol (5520.3148 without restraints) Performing minimization step: 3940. Total energy = 5521.4994 kcal/mol (5519.4785 without restraints) Performing minimization step: 3941. Total energy = 5520.6631 kcal/mol (5518.6429 without restraints) Performing minimization step: 3942. Total energy = 5519.8273 kcal/mol (5517.8078 without restraints) Performing minimization step: 3943. Total energy = 5518.9922 kcal/mol (5516.9733 without restraints) Performing minimization step: 3944. Total energy = 5518.1577 kcal/mol (5516.1395 without restraints) Performing minimization step: 3945. Total energy = 5517.3236 kcal/mol (5515.3061 without restraints) Performing minimization step: 3946. Total energy = 5516.4907 kcal/mol (5514.4737 without restraints) Performing minimization step: 3947. Total energy = 5515.6579 kcal/mol (5513.6417 without restraints) Performing minimization step: 3948. Total energy = 5514.8263 kcal/mol (5512.8107 without restraints) Performing minimization step: 3949. Total energy = 5513.9950 kcal/mol (5511.9800 without restraints) Performing minimization step: 3950. Total energy = 5513.1646 kcal/mol (5511.1503 without restraints) Performing minimization step: 3951. Total energy = 5512.3341 kcal/mol (5510.3205 without restraints) Performing minimization step: 3952. Total energy = 5511.5044 kcal/mol (5509.4914 without restraints) Performing minimization step: 3953. Total energy = 5510.6754 kcal/mol (5508.6631 without restraints) Performing minimization step: 3954. Total energy = 5509.8473 kcal/mol (5507.8358 without restraints) Performing minimization step: 3955. Total energy = 5509.0195 kcal/mol (5507.0084 without restraints) Performing minimization step: 3956. Total energy = 5508.1923 kcal/mol (5506.1820 without restraints) Performing minimization step: 3957. Total energy = 5507.3657 kcal/mol (5505.3560 without restraints) Performing minimization step: 3958. Total energy = 5506.5397 kcal/mol (5504.5307 without restraints) Performing minimization step: 3959. Total energy = 5505.7143 kcal/mol (5503.7059 without restraints) Performing minimization step: 3960. Total energy = 5504.8894 kcal/mol (5502.8814 without restraints) Performing minimization step: 3961. Total energy = 5504.0650 kcal/mol (5502.0579 without restraints) Performing minimization step: 3962. Total energy = 5503.2418 kcal/mol (5501.2356 without restraints) Performing minimization step: 3963. Total energy = 5502.4192 kcal/mol (5500.4135 without restraints) Performing minimization step: 3964. Total energy = 5501.5973 kcal/mol (5499.5922 without restraints) Performing minimization step: 3965. Total energy = 5500.7760 kcal/mol (5498.7715 without restraints) Performing minimization step: 3966. Total energy = 5499.9549 kcal/mol (5497.9510 without restraints) Performing minimization step: 3967. Total energy = 5499.1343 kcal/mol (5497.1311 without restraints) Performing minimization step: 3968. Total energy = 5498.3149 kcal/mol (5496.3125 without restraints) Performing minimization step: 3969. Total energy = 5497.4963 kcal/mol (5495.4944 without restraints) Performing minimization step: 3970. Total energy = 5496.6781 kcal/mol (5494.6768 without restraints) Performing minimization step: 3971. Total energy = 5495.8601 kcal/mol (5493.8594 without restraints) Performing minimization step: 3972. Total energy = 5495.0427 kcal/mol (5493.0427 without restraints) Performing minimization step: 3973. Total energy = 5494.2259 kcal/mol (5492.2266 without restraints) Performing minimization step: 3974. Total energy = 5493.4096 kcal/mol (5491.4109 without restraints) Performing minimization step: 3975. Total energy = 5492.5940 kcal/mol (5490.5959 without restraints) Performing minimization step: 3976. Total energy = 5491.7797 kcal/mol (5489.7825 without restraints) Performing minimization step: 3977. Total energy = 5490.9653 kcal/mol (5488.9685 without restraints) Performing minimization step: 3978. Total energy = 5490.1514 kcal/mol (5488.1553 without restraints) Performing minimization step: 3979. Total energy = 5489.3377 kcal/mol (5487.3422 without restraints) Performing minimization step: 3980. Total energy = 5488.5249 kcal/mol (5486.5301 without restraints) Performing minimization step: 3981. Total energy = 5487.7130 kcal/mol (5485.7191 without restraints) Performing minimization step: 3982. Total energy = 5486.9017 kcal/mol (5484.9081 without restraints) Performing minimization step: 3983. Total energy = 5486.0909 kcal/mol (5484.0980 without restraints) Performing minimization step: 3984. Total energy = 5485.2804 kcal/mol (5483.2882 without restraints) Performing minimization step: 3985. Total energy = 5484.4705 kcal/mol (5482.4789 without restraints) Performing minimization step: 3986. Total energy = 5483.6614 kcal/mol (5481.6705 without restraints) Performing minimization step: 3987. Total energy = 5482.8527 kcal/mol (5480.8624 without restraints) Performing minimization step: 3988. Total energy = 5482.0451 kcal/mol (5480.0555 without restraints) Performing minimization step: 3989. Total energy = 5481.2378 kcal/mol (5479.2488 without restraints) Performing minimization step: 3990. Total energy = 5480.4309 kcal/mol (5478.4425 without restraints) Performing minimization step: 3991. Total energy = 5479.6248 kcal/mol (5477.6371 without restraints) Performing minimization step: 3992. Total energy = 5478.8193 kcal/mol (5476.8323 without restraints) Performing minimization step: 3993. Total energy = 5478.0144 kcal/mol (5476.0280 without restraints) Performing minimization step: 3994. Total energy = 5477.2102 kcal/mol (5475.2244 without restraints) Performing minimization step: 3995. Total energy = 5476.4066 kcal/mol (5474.4214 without restraints) Performing minimization step: 3996. Total energy = 5475.6034 kcal/mol (5473.6189 without restraints) Performing minimization step: 3997. Total energy = 5474.8010 kcal/mol (5472.8171 without restraints) Performing minimization step: 3998. Total energy = 5473.9991 kcal/mol (5472.0159 without restraints) Performing minimization step: 3999. Total energy = 5473.1974 kcal/mol (5471.2148 without restraints) Performing minimization step: 4000. Total energy = 5472.3966 kcal/mol (5470.4148 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 5471.5964 kcal/mol (5469.6151 without restraints) Performing minimization step: 4002. Total energy = 5470.7969 kcal/mol (5468.8162 without restraints) Performing minimization step: 4003. Total energy = 5469.9977 kcal/mol (5468.0177 without restraints) Performing minimization step: 4004. Total energy = 5469.1991 kcal/mol (5467.2197 without restraints) Performing minimization step: 4005. Total energy = 5468.4010 kcal/mol (5466.4223 without restraints) Performing minimization step: 4006. Total energy = 5467.6034 kcal/mol (5465.6253 without restraints) Performing minimization step: 4007. Total energy = 5466.8064 kcal/mol (5464.8291 without restraints) Performing minimization step: 4008. Total energy = 5466.0103 kcal/mol (5464.0334 without restraints) Performing minimization step: 4009. Total energy = 5465.2145 kcal/mol (5463.2383 without restraints) Performing minimization step: 4010. Total energy = 5464.4192 kcal/mol (5462.4436 without restraints) Performing minimization step: 4011. Total energy = 5463.6246 kcal/mol (5461.6498 without restraints) Performing minimization step: 4012. Total energy = 5462.8307 kcal/mol (5460.8564 without restraints) Performing minimization step: 4013. Total energy = 5462.0369 kcal/mol (5460.0633 without restraints) Performing minimization step: 4014. Total energy = 5461.2449 kcal/mol (5459.2719 without restraints) Performing minimization step: 4015. Total energy = 5460.4526 kcal/mol (5458.4803 without restraints) Performing minimization step: 4016. Total energy = 5459.6613 kcal/mol (5457.6898 without restraints) Performing minimization step: 4017. Total energy = 5458.8704 kcal/mol (5456.8994 without restraints) Performing minimization step: 4018. Total energy = 5458.0803 kcal/mol (5456.1098 without restraints) Performing minimization step: 4019. Total energy = 5457.2905 kcal/mol (5455.3207 without restraints) Performing minimization step: 4020. Total energy = 5456.5011 kcal/mol (5454.5319 without restraints) Performing minimization step: 4021. Total energy = 5455.7121 kcal/mol (5453.7435 without restraints) Performing minimization step: 4022. Total energy = 5454.9236 kcal/mol (5452.9557 without restraints) Performing minimization step: 4023. Total energy = 5454.1353 kcal/mol (5452.1680 without restraints) Performing minimization step: 4024. Total energy = 5453.3483 kcal/mol (5451.3818 without restraints) Performing minimization step: 4025. Total energy = 5452.5616 kcal/mol (5450.5955 without restraints) Performing minimization step: 4026. Total energy = 5451.7755 kcal/mol (5449.8103 without restraints) Performing minimization step: 4027. Total energy = 5450.9900 kcal/mol (5449.0253 without restraints) Performing minimization step: 4028. Total energy = 5450.2054 kcal/mol (5448.2414 without restraints) Performing minimization step: 4029. Total energy = 5449.4213 kcal/mol (5447.4579 without restraints) Performing minimization step: 4030. Total energy = 5448.6379 kcal/mol (5446.6750 without restraints) Performing minimization step: 4031. Total energy = 5447.8545 kcal/mol (5445.8923 without restraints) Performing minimization step: 4032. Total energy = 5447.0718 kcal/mol (5445.1103 without restraints) Performing minimization step: 4033. Total energy = 5446.2895 kcal/mol (5444.3286 without restraints) Performing minimization step: 4034. Total energy = 5445.5084 kcal/mol (5443.5481 without restraints) Performing minimization step: 4035. Total energy = 5444.7274 kcal/mol (5442.7679 without restraints) Performing minimization step: 4036. Total energy = 5443.9476 kcal/mol (5441.9885 without restraints) Performing minimization step: 4037. Total energy = 5443.1677 kcal/mol (5441.2095 without restraints) Performing minimization step: 4038. Total energy = 5442.3884 kcal/mol (5440.4306 without restraints) Performing minimization step: 4039. Total energy = 5441.6093 kcal/mol (5439.6521 without restraints) Performing minimization step: 4040. Total energy = 5440.8310 kcal/mol (5438.8745 without restraints) Performing minimization step: 4041. Total energy = 5440.0537 kcal/mol (5438.0979 without restraints) Performing minimization step: 4042. Total energy = 5439.2765 kcal/mol (5437.3213 without restraints) Performing minimization step: 4043. Total energy = 5438.4999 kcal/mol (5436.5454 without restraints) Performing minimization step: 4044. Total energy = 5437.7238 kcal/mol (5435.7699 without restraints) Performing minimization step: 4045. Total energy = 5436.9483 kcal/mol (5434.9950 without restraints) Performing minimization step: 4046. Total energy = 5436.1734 kcal/mol (5434.2208 without restraints) Performing minimization step: 4047. Total energy = 5435.3990 kcal/mol (5433.4469 without restraints) Performing minimization step: 4048. Total energy = 5434.6254 kcal/mol (5432.6740 without restraints) Performing minimization step: 4049. Total energy = 5433.8519 kcal/mol (5431.9009 without restraints) Performing minimization step: 4050. Total energy = 5433.0789 kcal/mol (5431.1287 without restraints) Performing minimization step: 4051. Total energy = 5432.3069 kcal/mol (5430.3574 without restraints) Performing minimization step: 4052. Total energy = 5431.5354 kcal/mol (5429.5864 without restraints) Performing minimization step: 4053. Total energy = 5430.7642 kcal/mol (5428.8158 without restraints) Performing minimization step: 4054. Total energy = 5429.9934 kcal/mol (5428.0458 without restraints) Performing minimization step: 4055. Total energy = 5429.2235 kcal/mol (5427.2765 without restraints) Performing minimization step: 4056. Total energy = 5428.4543 kcal/mol (5426.5078 without restraints) Performing minimization step: 4057. Total energy = 5427.6852 kcal/mol (5425.7393 without restraints) Performing minimization step: 4058. Total energy = 5426.9170 kcal/mol (5424.9718 without restraints) Performing minimization step: 4059. Total energy = 5426.1491 kcal/mol (5424.2045 without restraints) Performing minimization step: 4060. Total energy = 5425.3817 kcal/mol (5423.4378 without restraints) Performing minimization step: 4061. Total energy = 5424.6148 kcal/mol (5422.6715 without restraints) Performing minimization step: 4062. Total energy = 5423.8486 kcal/mol (5421.9060 without restraints) Performing minimization step: 4063. Total energy = 5423.0832 kcal/mol (5421.1412 without restraints) Performing minimization step: 4064. Total energy = 5422.3182 kcal/mol (5420.3769 without restraints) Performing minimization step: 4065. Total energy = 5421.5537 kcal/mol (5419.6130 without restraints) Performing minimization step: 4066. Total energy = 5420.7901 kcal/mol (5418.8499 without restraints) Performing minimization step: 4067. Total energy = 5420.0265 kcal/mol (5418.0870 without restraints) Performing minimization step: 4068. Total energy = 5419.2635 kcal/mol (5417.3246 without restraints) Performing minimization step: 4069. Total energy = 5418.5010 kcal/mol (5416.5627 without restraints) Performing minimization step: 4070. Total energy = 5417.7390 kcal/mol (5415.8016 without restraints) Performing minimization step: 4071. Total energy = 5416.9778 kcal/mol (5415.0407 without restraints) Performing minimization step: 4072. Total energy = 5416.2170 kcal/mol (5414.2806 without restraints) Performing minimization step: 4073. Total energy = 5415.4567 kcal/mol (5413.5209 without restraints) Performing minimization step: 4074. Total energy = 5414.6968 kcal/mol (5412.7616 without restraints) Performing minimization step: 4075. Total energy = 5413.9371 kcal/mol (5412.0024 without restraints) Performing minimization step: 4076. Total energy = 5413.1786 kcal/mol (5411.2448 without restraints) Performing minimization step: 4077. Total energy = 5412.4206 kcal/mol (5410.4873 without restraints) Performing minimization step: 4078. Total energy = 5411.6630 kcal/mol (5409.7303 without restraints) Performing minimization step: 4079. Total energy = 5410.9058 kcal/mol (5408.9738 without restraints) Performing minimization step: 4080. Total energy = 5410.1494 kcal/mol (5408.2180 without restraints) Performing minimization step: 4081. Total energy = 5409.3937 kcal/mol (5407.4630 without restraints) Performing minimization step: 4082. Total energy = 5408.6383 kcal/mol (5406.7080 without restraints) Performing minimization step: 4083. Total energy = 5407.8834 kcal/mol (5405.9538 without restraints) Performing minimization step: 4084. Total energy = 5407.1287 kcal/mol (5405.1998 without restraints) Performing minimization step: 4085. Total energy = 5406.3751 kcal/mol (5404.4467 without restraints) Performing minimization step: 4086. Total energy = 5405.6219 kcal/mol (5403.6942 without restraints) Performing minimization step: 4087. Total energy = 5404.8689 kcal/mol (5402.9417 without restraints) Performing minimization step: 4088. Total energy = 5404.1166 kcal/mol (5402.1900 without restraints) Performing minimization step: 4089. Total energy = 5403.3650 kcal/mol (5401.4392 without restraints) Performing minimization step: 4090. Total energy = 5402.6141 kcal/mol (5400.6891 without restraints) Performing minimization step: 4091. Total energy = 5401.8642 kcal/mol (5399.9395 without restraints) Performing minimization step: 4092. Total energy = 5401.1141 kcal/mol (5399.1901 without restraints) Performing minimization step: 4093. Total energy = 5400.3650 kcal/mol (5398.4418 without restraints) Performing minimization step: 4094. Total energy = 5399.6160 kcal/mol (5397.6932 without restraints) Performing minimization step: 4095. Total energy = 5398.8672 kcal/mol (5396.9451 without restraints) Performing minimization step: 4096. Total energy = 5398.1194 kcal/mol (5396.1979 without restraints) Performing minimization step: 4097. Total energy = 5397.3721 kcal/mol (5395.4512 without restraints) Performing minimization step: 4098. Total energy = 5396.6258 kcal/mol (5394.7057 without restraints) Performing minimization step: 4099. Total energy = 5395.8800 kcal/mol (5393.9604 without restraints) Performing minimization step: 4100. Total energy = 5395.1341 kcal/mol (5393.2150 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 5394.3890 kcal/mol (5392.4705 without restraints) Performing minimization step: 4102. Total energy = 5393.6443 kcal/mol (5391.7264 without restraints) Performing minimization step: 4103. Total energy = 5392.8999 kcal/mol (5390.9826 without restraints) Performing minimization step: 4104. Total energy = 5392.1557 kcal/mol (5390.2391 without restraints) Performing minimization step: 4105. Total energy = 5391.4127 kcal/mol (5389.4967 without restraints) Performing minimization step: 4106. Total energy = 5390.6703 kcal/mol (5388.7549 without restraints) Performing minimization step: 4107. Total energy = 5389.9281 kcal/mol (5388.0133 without restraints) Performing minimization step: 4108. Total energy = 5389.1863 kcal/mol (5387.2721 without restraints) Performing minimization step: 4109. Total energy = 5388.4451 kcal/mol (5386.5316 without restraints) Performing minimization step: 4110. Total energy = 5387.7043 kcal/mol (5385.7913 without restraints) Performing minimization step: 4111. Total energy = 5386.9640 kcal/mol (5385.0516 without restraints) Performing minimization step: 4112. Total energy = 5386.2240 kcal/mol (5384.3122 without restraints) Performing minimization step: 4113. Total energy = 5385.4851 kcal/mol (5383.5740 without restraints) Performing minimization step: 4114. Total energy = 5384.7468 kcal/mol (5382.8362 without restraints) Performing minimization step: 4115. Total energy = 5384.0085 kcal/mol (5382.0986 without restraints) Performing minimization step: 4116. Total energy = 5383.2703 kcal/mol (5381.3609 without restraints) Performing minimization step: 4117. Total energy = 5382.5332 kcal/mol (5380.6245 without restraints) Performing minimization step: 4118. Total energy = 5381.7970 kcal/mol (5379.8893 without restraints) Performing minimization step: 4119. Total energy = 5381.0609 kcal/mol (5379.1535 without restraints) Performing minimization step: 4120. Total energy = 5380.3254 kcal/mol (5378.4186 without restraints) Performing minimization step: 4121. Total energy = 5379.5903 kcal/mol (5377.6841 without restraints) Performing minimization step: 4122. Total energy = 5378.8560 kcal/mol (5376.9504 without restraints) Performing minimization step: 4123. Total energy = 5378.1219 kcal/mol (5376.2169 without restraints) Performing minimization step: 4124. Total energy = 5377.3883 kcal/mol (5375.4839 without restraints) Performing minimization step: 4125. Total energy = 5376.6552 kcal/mol (5374.7514 without restraints) Performing minimization step: 4126. Total energy = 5375.9229 kcal/mol (5374.0197 without restraints) Performing minimization step: 4127. Total energy = 5375.1910 kcal/mol (5373.2885 without restraints) Performing minimization step: 4128. Total energy = 5374.4599 kcal/mol (5372.5581 without restraints) Performing minimization step: 4129. Total energy = 5373.7291 kcal/mol (5371.8276 without restraints) Performing minimization step: 4130. Total energy = 5372.9987 kcal/mol (5371.0980 without restraints) Performing minimization step: 4131. Total energy = 5372.2689 kcal/mol (5370.3688 without restraints) Performing minimization step: 4132. Total energy = 5371.5392 kcal/mol (5369.6397 without restraints) Performing minimization step: 4133. Total energy = 5370.8101 kcal/mol (5368.9112 without restraints) Performing minimization step: 4134. Total energy = 5370.0822 kcal/mol (5368.1839 without restraints) Performing minimization step: 4135. Total energy = 5369.3545 kcal/mol (5367.4567 without restraints) Performing minimization step: 4136. Total energy = 5368.6268 kcal/mol (5366.7296 without restraints) Performing minimization step: 4137. Total energy = 5367.8997 kcal/mol (5366.0032 without restraints) Performing minimization step: 4138. Total energy = 5367.1731 kcal/mol (5365.2772 without restraints) Performing minimization step: 4139. Total energy = 5366.4471 kcal/mol (5364.5519 without restraints) Performing minimization step: 4140. Total energy = 5365.7219 kcal/mol (5363.8272 without restraints) Performing minimization step: 4141. Total energy = 5364.9969 kcal/mol (5363.1028 without restraints) Performing minimization step: 4142. Total energy = 5364.2727 kcal/mol (5362.3792 without restraints) Performing minimization step: 4143. Total energy = 5363.5490 kcal/mol (5361.6562 without restraints) Performing minimization step: 4144. Total energy = 5362.8257 kcal/mol (5360.9335 without restraints) Performing minimization step: 4145. Total energy = 5362.1028 kcal/mol (5360.2112 without restraints) Performing minimization step: 4146. Total energy = 5361.3806 kcal/mol (5359.4895 without restraints) Performing minimization step: 4147. Total energy = 5360.6583 kcal/mol (5358.7679 without restraints) Performing minimization step: 4148. Total energy = 5359.9365 kcal/mol (5358.0467 without restraints) Performing minimization step: 4149. Total energy = 5359.2157 kcal/mol (5357.3265 without restraints) Performing minimization step: 4150. Total energy = 5358.4954 kcal/mol (5356.6068 without restraints) Performing minimization step: 4151. Total energy = 5357.7756 kcal/mol (5355.8875 without restraints) Performing minimization step: 4152. Total energy = 5357.0560 kcal/mol (5355.1686 without restraints) Performing minimization step: 4153. Total energy = 5356.3370 kcal/mol (5354.4502 without restraints) Performing minimization step: 4154. Total energy = 5355.6186 kcal/mol (5353.7323 without restraints) Performing minimization step: 4155. Total energy = 5354.9008 kcal/mol (5353.0153 without restraints) Performing minimization step: 4156. Total energy = 5354.1835 kcal/mol (5352.2985 without restraints) Performing minimization step: 4157. Total energy = 5353.4673 kcal/mol (5351.5830 without restraints) Performing minimization step: 4158. Total energy = 5352.7516 kcal/mol (5350.8680 without restraints) Performing minimization step: 4159. Total energy = 5352.0358 kcal/mol (5350.1526 without restraints) Performing minimization step: 4160. Total energy = 5351.3206 kcal/mol (5349.4381 without restraints) Performing minimization step: 4161. Total energy = 5350.6057 kcal/mol (5348.7238 without restraints) Performing minimization step: 4162. Total energy = 5349.8913 kcal/mol (5348.0098 without restraints) Performing minimization step: 4163. Total energy = 5349.1772 kcal/mol (5347.2966 without restraints) Performing minimization step: 4164. Total energy = 5348.4645 kcal/mol (5346.5844 without restraints) Performing minimization step: 4165. Total energy = 5347.7520 kcal/mol (5345.8725 without restraints) Performing minimization step: 4166. Total energy = 5347.0395 kcal/mol (5345.1605 without restraints) Performing minimization step: 4167. Total energy = 5346.3274 kcal/mol (5344.4490 without restraints) Performing minimization step: 4168. Total energy = 5345.6163 kcal/mol (5343.7386 without restraints) Performing minimization step: 4169. Total energy = 5344.9056 kcal/mol (5343.0283 without restraints) Performing minimization step: 4170. Total energy = 5344.1953 kcal/mol (5342.3186 without restraints) Performing minimization step: 4171. Total energy = 5343.4852 kcal/mol (5341.6092 without restraints) Performing minimization step: 4172. Total energy = 5342.7758 kcal/mol (5340.9004 without restraints) Performing minimization step: 4173. Total energy = 5342.0667 kcal/mol (5340.1918 without restraints) Performing minimization step: 4174. Total energy = 5341.3585 kcal/mol (5339.4842 without restraints) Performing minimization step: 4175. Total energy = 5340.6505 kcal/mol (5338.7768 without restraints) Performing minimization step: 4176. Total energy = 5339.9430 kcal/mol (5338.0699 without restraints) Performing minimization step: 4177. Total energy = 5339.2359 kcal/mol (5337.3634 without restraints) Performing minimization step: 4178. Total energy = 5338.5292 kcal/mol (5336.6573 without restraints) Performing minimization step: 4179. Total energy = 5337.8238 kcal/mol (5335.9527 without restraints) Performing minimization step: 4180. Total energy = 5337.1183 kcal/mol (5335.2476 without restraints) Performing minimization step: 4181. Total energy = 5336.4135 kcal/mol (5334.5435 without restraints) Performing minimization step: 4182. Total energy = 5335.7089 kcal/mol (5333.8395 without restraints) Performing minimization step: 4183. Total energy = 5335.0046 kcal/mol (5333.1356 without restraints) Performing minimization step: 4184. Total energy = 5334.3010 kcal/mol (5332.4329 without restraints) Performing minimization step: 4185. Total energy = 5333.5980 kcal/mol (5331.7303 without restraints) Performing minimization step: 4186. Total energy = 5332.8953 kcal/mol (5331.0281 without restraints) Performing minimization step: 4187. Total energy = 5332.1929 kcal/mol (5330.3263 without restraints) Performing minimization step: 4188. Total energy = 5331.4910 kcal/mol (5329.6251 without restraints) Performing minimization step: 4189. Total energy = 5330.7895 kcal/mol (5328.9240 without restraints) Performing minimization step: 4190. Total energy = 5330.0888 kcal/mol (5328.2241 without restraints) Performing minimization step: 4191. Total energy = 5329.3889 kcal/mol (5327.5249 without restraints) Performing minimization step: 4192. Total energy = 5328.6895 kcal/mol (5326.8259 without restraints) Performing minimization step: 4193. Total energy = 5327.9901 kcal/mol (5326.1270 without restraints) Performing minimization step: 4194. Total energy = 5327.2908 kcal/mol (5325.4284 without restraints) Performing minimization step: 4195. Total energy = 5326.5923 kcal/mol (5324.7305 without restraints) Performing minimization step: 4196. Total energy = 5325.8945 kcal/mol (5324.0333 without restraints) Performing minimization step: 4197. Total energy = 5325.1976 kcal/mol (5323.3369 without restraints) Performing minimization step: 4198. Total energy = 5324.5008 kcal/mol (5322.6408 without restraints) Performing minimization step: 4199. Total energy = 5323.8043 kcal/mol (5321.9449 without restraints) Performing minimization step: 4200. Total energy = 5323.1086 kcal/mol (5321.2497 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 5322.4127 kcal/mol (5320.5544 without restraints) Performing minimization step: 4202. Total energy = 5321.7181 kcal/mol (5319.8605 without restraints) Performing minimization step: 4203. Total energy = 5321.0238 kcal/mol (5319.1668 without restraints) Performing minimization step: 4204. Total energy = 5320.3302 kcal/mol (5318.4737 without restraints) Performing minimization step: 4205. Total energy = 5319.6369 kcal/mol (5317.7809 without restraints) Performing minimization step: 4206. Total energy = 5318.9438 kcal/mol (5317.0884 without restraints) Performing minimization step: 4207. Total energy = 5318.2514 kcal/mol (5316.3969 without restraints) Performing minimization step: 4208. Total energy = 5317.5597 kcal/mol (5315.7057 without restraints) Performing minimization step: 4209. Total energy = 5316.8677 kcal/mol (5315.0140 without restraints) Performing minimization step: 4210. Total energy = 5316.1759 kcal/mol (5314.3231 without restraints) Performing minimization step: 4211. Total energy = 5315.4854 kcal/mol (5313.6330 without restraints) Performing minimization step: 4212. Total energy = 5314.7955 kcal/mol (5312.9436 without restraints) Performing minimization step: 4213. Total energy = 5314.1057 kcal/mol (5312.2545 without restraints) Performing minimization step: 4214. Total energy = 5313.4161 kcal/mol (5311.5654 without restraints) Performing minimization step: 4215. Total energy = 5312.7273 kcal/mol (5310.8772 without restraints) Performing minimization step: 4216. Total energy = 5312.0390 kcal/mol (5310.1896 without restraints) Performing minimization step: 4217. Total energy = 5311.3521 kcal/mol (5309.5031 without restraints) Performing minimization step: 4218. Total energy = 5310.6646 kcal/mol (5308.8163 without restraints) Performing minimization step: 4219. Total energy = 5309.9775 kcal/mol (5308.1297 without restraints) Performing minimization step: 4220. Total energy = 5309.2913 kcal/mol (5307.4443 without restraints) Performing minimization step: 4221. Total energy = 5308.6056 kcal/mol (5306.7590 without restraints) Performing minimization step: 4222. Total energy = 5307.9199 kcal/mol (5306.0740 without restraints) Performing minimization step: 4223. Total energy = 5307.2350 kcal/mol (5305.3897 without restraints) Performing minimization step: 4224. Total energy = 5306.5502 kcal/mol (5304.7054 without restraints) Performing minimization step: 4225. Total energy = 5305.8659 kcal/mol (5304.0217 without restraints) Performing minimization step: 4226. Total energy = 5305.1821 kcal/mol (5303.3385 without restraints) Performing minimization step: 4227. Total energy = 5304.4987 kcal/mol (5302.6556 without restraints) Performing minimization step: 4228. Total energy = 5303.8160 kcal/mol (5301.9735 without restraints) Performing minimization step: 4229. Total energy = 5303.1339 kcal/mol (5301.2919 without restraints) Performing minimization step: 4230. Total energy = 5302.4527 kcal/mol (5300.6115 without restraints) Performing minimization step: 4231. Total energy = 5301.7714 kcal/mol (5299.9306 without restraints) Performing minimization step: 4232. Total energy = 5301.0908 kcal/mol (5299.2505 without restraints) Performing minimization step: 4233. Total energy = 5300.4104 kcal/mol (5298.5709 without restraints) Performing minimization step: 4234. Total energy = 5299.7307 kcal/mol (5297.8918 without restraints) Performing minimization step: 4235. Total energy = 5299.0513 kcal/mol (5297.2128 without restraints) Performing minimization step: 4236. Total energy = 5298.3721 kcal/mol (5296.5342 without restraints) Performing minimization step: 4237. Total energy = 5297.6935 kcal/mol (5295.8563 without restraints) Performing minimization step: 4238. Total energy = 5297.0158 kcal/mol (5295.1791 without restraints) Performing minimization step: 4239. Total energy = 5296.3381 kcal/mol (5294.5020 without restraints) Performing minimization step: 4240. Total energy = 5295.6610 kcal/mol (5293.8255 without restraints) Performing minimization step: 4241. Total energy = 5294.9841 kcal/mol (5293.1492 without restraints) Performing minimization step: 4242. Total energy = 5294.3077 kcal/mol (5292.4733 without restraints) Performing minimization step: 4243. Total energy = 5293.6319 kcal/mol (5291.7981 without restraints) Performing minimization step: 4244. Total energy = 5292.9569 kcal/mol (5291.1236 without restraints) Performing minimization step: 4245. Total energy = 5292.2817 kcal/mol (5290.4490 without restraints) Performing minimization step: 4246. Total energy = 5291.6072 kcal/mol (5289.7751 without restraints) Performing minimization step: 4247. Total energy = 5290.9335 kcal/mol (5289.1020 without restraints) Performing minimization step: 4248. Total energy = 5290.2599 kcal/mol (5288.4291 without restraints) Performing minimization step: 4249. Total energy = 5289.5869 kcal/mol (5287.7565 without restraints) Performing minimization step: 4250. Total energy = 5288.9143 kcal/mol (5287.0846 without restraints) Performing minimization step: 4251. Total energy = 5288.2425 kcal/mol (5286.4133 without restraints) Performing minimization step: 4252. Total energy = 5287.5707 kcal/mol (5285.7421 without restraints) Performing minimization step: 4253. Total energy = 5286.8992 kcal/mol (5285.0712 without restraints) Performing minimization step: 4254. Total energy = 5286.2286 kcal/mol (5284.4011 without restraints) Performing minimization step: 4255. Total energy = 5285.5583 kcal/mol (5283.7314 without restraints) Performing minimization step: 4256. Total energy = 5284.8887 kcal/mol (5283.0624 without restraints) Performing minimization step: 4257. Total energy = 5284.2192 kcal/mol (5282.3935 without restraints) Performing minimization step: 4258. Total energy = 5283.5504 kcal/mol (5281.7252 without restraints) Performing minimization step: 4259. Total energy = 5282.8819 kcal/mol (5281.0573 without restraints) Performing minimization step: 4260. Total energy = 5282.2131 kcal/mol (5280.3889 without restraints) Performing minimization step: 4261. Total energy = 5281.5450 kcal/mol (5279.7216 without restraints) Performing minimization step: 4262. Total energy = 5280.8783 kcal/mol (5279.0553 without restraints) Performing minimization step: 4263. Total energy = 5280.2115 kcal/mol (5278.3892 without restraints) Performing minimization step: 4264. Total energy = 5279.5454 kcal/mol (5277.7236 without restraints) Performing minimization step: 4265. Total energy = 5278.8795 kcal/mol (5277.0583 without restraints) Performing minimization step: 4266. Total energy = 5278.2138 kcal/mol (5276.3932 without restraints) Performing minimization step: 4267. Total energy = 5277.5489 kcal/mol (5275.7288 without restraints) Performing minimization step: 4268. Total energy = 5276.8842 kcal/mol (5275.0647 without restraints) Performing minimization step: 4269. Total energy = 5276.2201 kcal/mol (5274.4011 without restraints) Performing minimization step: 4270. Total energy = 5275.5566 kcal/mol (5273.7383 without restraints) Performing minimization step: 4271. Total energy = 5274.8937 kcal/mol (5273.0760 without restraints) Performing minimization step: 4272. Total energy = 5274.2311 kcal/mol (5272.4139 without restraints) Performing minimization step: 4273. Total energy = 5273.5692 kcal/mol (5271.7526 without restraints) Performing minimization step: 4274. Total energy = 5272.9073 kcal/mol (5271.0913 without restraints) Performing minimization step: 4275. Total energy = 5272.2463 kcal/mol (5270.4306 without restraints) Performing minimization step: 4276. Total energy = 5271.5851 kcal/mol (5269.7702 without restraints) Performing minimization step: 4277. Total energy = 5270.9250 kcal/mol (5269.1107 without restraints) Performing minimization step: 4278. Total energy = 5270.2659 kcal/mol (5268.4521 without restraints) Performing minimization step: 4279. Total energy = 5269.6064 kcal/mol (5267.7932 without restraints) Performing minimization step: 4280. Total energy = 5268.9473 kcal/mol (5267.1346 without restraints) Performing minimization step: 4281. Total energy = 5268.2890 kcal/mol (5266.4769 without restraints) Performing minimization step: 4282. Total energy = 5267.6309 kcal/mol (5265.8194 without restraints) Performing minimization step: 4283. Total energy = 5266.9735 kcal/mol (5265.1626 without restraints) Performing minimization step: 4284. Total energy = 5266.3162 kcal/mol (5264.5058 without restraints) Performing minimization step: 4285. Total energy = 5265.6593 kcal/mol (5263.8495 without restraints) Performing minimization step: 4286. Total energy = 5265.0031 kcal/mol (5263.1939 without restraints) Performing minimization step: 4287. Total energy = 5264.3474 kcal/mol (5262.5387 without restraints) Performing minimization step: 4288. Total energy = 5263.6919 kcal/mol (5261.8838 without restraints) Performing minimization step: 4289. Total energy = 5263.0368 kcal/mol (5261.2292 without restraints) Performing minimization step: 4290. Total energy = 5262.3821 kcal/mol (5260.5752 without restraints) Performing minimization step: 4291. Total energy = 5261.7281 kcal/mol (5259.9216 without restraints) Performing minimization step: 4292. Total energy = 5261.0746 kcal/mol (5259.2687 without restraints) Performing minimization step: 4293. Total energy = 5260.4209 kcal/mol (5258.6155 without restraints) Performing minimization step: 4294. Total energy = 5259.7679 kcal/mol (5257.9631 without restraints) Performing minimization step: 4295. Total energy = 5259.1151 kcal/mol (5257.3109 without restraints) Performing minimization step: 4296. Total energy = 5258.4631 kcal/mol (5256.6594 without restraints) Performing minimization step: 4297. Total energy = 5257.8115 kcal/mol (5256.0084 without restraints) Performing minimization step: 4298. Total energy = 5257.1604 kcal/mol (5255.3577 without restraints) Performing minimization step: 4299. Total energy = 5256.5097 kcal/mol (5254.7077 without restraints) Performing minimization step: 4300. Total energy = 5255.8595 kcal/mol (5254.0582 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 5255.2103 kcal/mol (5253.4096 without restraints) Performing minimization step: 4302. Total energy = 5254.5610 kcal/mol (5252.7607 without restraints) Performing minimization step: 4303. Total energy = 5253.9122 kcal/mol (5252.1125 without restraints) Performing minimization step: 4304. Total energy = 5253.2638 kcal/mol (5251.4646 without restraints) Performing minimization step: 4305. Total energy = 5252.6160 kcal/mol (5250.8175 without restraints) Performing minimization step: 4306. Total energy = 5251.9688 kcal/mol (5250.1708 without restraints) Performing minimization step: 4307. Total energy = 5251.3216 kcal/mol (5249.5241 without restraints) Performing minimization step: 4308. Total energy = 5250.6752 kcal/mol (5248.8783 without restraints) Performing minimization step: 4309. Total energy = 5250.0292 kcal/mol (5248.2328 without restraints) Performing minimization step: 4310. Total energy = 5249.3837 kcal/mol (5247.5880 without restraints) Performing minimization step: 4311. Total energy = 5248.7384 kcal/mol (5246.9431 without restraints) Performing minimization step: 4312. Total energy = 5248.0935 kcal/mol (5246.2988 without restraints) Performing minimization step: 4313. Total energy = 5247.4490 kcal/mol (5245.6550 without restraints) Performing minimization step: 4314. Total energy = 5246.8050 kcal/mol (5245.0115 without restraints) Performing minimization step: 4315. Total energy = 5246.1614 kcal/mol (5244.3683 without restraints) Performing minimization step: 4316. Total energy = 5245.5181 kcal/mol (5243.7260 without restraints) Performing minimization step: 4317. Total energy = 5244.8759 kcal/mol (5243.0840 without restraints) Performing minimization step: 4318. Total energy = 5244.2341 kcal/mol (5242.4429 without restraints) Performing minimization step: 4319. Total energy = 5243.5921 kcal/mol (5241.8012 without restraints) Performing minimization step: 4320. Total energy = 5242.9501 kcal/mol (5241.1599 without restraints) Performing minimization step: 4321. Total energy = 5242.3088 kcal/mol (5240.5191 without restraints) Performing minimization step: 4322. Total energy = 5241.6681 kcal/mol (5239.8789 without restraints) Performing minimization step: 4323. Total energy = 5241.0282 kcal/mol (5239.2396 without restraints) Performing minimization step: 4324. Total energy = 5240.3885 kcal/mol (5238.6005 without restraints) Performing minimization step: 4325. Total energy = 5239.7492 kcal/mol (5237.9617 without restraints) Performing minimization step: 4326. Total energy = 5239.1103 kcal/mol (5237.3235 without restraints) Performing minimization step: 4327. Total energy = 5238.4719 kcal/mol (5236.6857 without restraints) Performing minimization step: 4328. Total energy = 5237.8342 kcal/mol (5236.0484 without restraints) Performing minimization step: 4329. Total energy = 5237.1968 kcal/mol (5235.4115 without restraints) Performing minimization step: 4330. Total energy = 5236.5592 kcal/mol (5234.7745 without restraints) Performing minimization step: 4331. Total energy = 5235.9224 kcal/mol (5234.1382 without restraints) Performing minimization step: 4332. Total energy = 5235.2863 kcal/mol (5233.5028 without restraints) Performing minimization step: 4333. Total energy = 5234.6506 kcal/mol (5232.8676 without restraints) Performing minimization step: 4334. Total energy = 5234.0157 kcal/mol (5232.2334 without restraints) Performing minimization step: 4335. Total energy = 5233.3809 kcal/mol (5231.5990 without restraints) Performing minimization step: 4336. Total energy = 5232.7467 kcal/mol (5230.9655 without restraints) Performing minimization step: 4337. Total energy = 5232.1127 kcal/mol (5230.3319 without restraints) Performing minimization step: 4338. Total energy = 5231.4790 kcal/mol (5229.6988 without restraints) Performing minimization step: 4339. Total energy = 5230.8457 kcal/mol (5229.0659 without restraints) Performing minimization step: 4340. Total energy = 5230.2128 kcal/mol (5228.4335 without restraints) Performing minimization step: 4341. Total energy = 5229.5803 kcal/mol (5227.8015 without restraints) Performing minimization step: 4342. Total energy = 5228.9481 kcal/mol (5227.1700 without restraints) Performing minimization step: 4343. Total energy = 5228.3164 kcal/mol (5226.5388 without restraints) Performing minimization step: 4344. Total energy = 5227.6851 kcal/mol (5225.9081 without restraints) Performing minimization step: 4345. Total energy = 5227.0538 kcal/mol (5225.2774 without restraints) Performing minimization step: 4346. Total energy = 5226.4235 kcal/mol (5224.6476 without restraints) Performing minimization step: 4347. Total energy = 5225.7938 kcal/mol (5224.0184 without restraints) Performing minimization step: 4348. Total energy = 5225.1647 kcal/mol (5223.3898 without restraints) Performing minimization step: 4349. Total energy = 5224.5354 kcal/mol (5222.7611 without restraints) Performing minimization step: 4350. Total energy = 5223.9066 kcal/mol (5222.1327 without restraints) Performing minimization step: 4351. Total energy = 5223.2785 kcal/mol (5221.5053 without restraints) Performing minimization step: 4352. Total energy = 5222.6510 kcal/mol (5220.8784 without restraints) Performing minimization step: 4353. Total energy = 5222.0236 kcal/mol (5220.2515 without restraints) Performing minimization step: 4354. Total energy = 5221.3967 kcal/mol (5219.6251 without restraints) Performing minimization step: 4355. Total energy = 5220.7700 kcal/mol (5218.9990 without restraints) Performing minimization step: 4356. Total energy = 5220.1440 kcal/mol (5218.3735 without restraints) Performing minimization step: 4357. Total energy = 5219.5184 kcal/mol (5217.7485 without restraints) Performing minimization step: 4358. Total energy = 5218.8931 kcal/mol (5217.1237 without restraints) Performing minimization step: 4359. Total energy = 5218.2679 kcal/mol (5216.4990 without restraints) Performing minimization step: 4360. Total energy = 5217.6431 kcal/mol (5215.8748 without restraints) Performing minimization step: 4361. Total energy = 5217.0191 kcal/mol (5215.2513 without restraints) Performing minimization step: 4362. Total energy = 5216.3953 kcal/mol (5214.6281 without restraints) Performing minimization step: 4363. Total energy = 5215.7722 kcal/mol (5214.0055 without restraints) Performing minimization step: 4364. Total energy = 5215.1495 kcal/mol (5213.3833 without restraints) Performing minimization step: 4365. Total energy = 5214.5269 kcal/mol (5212.7613 without restraints) Performing minimization step: 4366. Total energy = 5213.9052 kcal/mol (5212.1401 without restraints) Performing minimization step: 4367. Total energy = 5213.2841 kcal/mol (5211.5196 without restraints) Performing minimization step: 4368. Total energy = 5212.6630 kcal/mol (5210.8991 without restraints) Performing minimization step: 4369. Total energy = 5212.0429 kcal/mol (5210.2794 without restraints) Performing minimization step: 4370. Total energy = 5211.4225 kcal/mol (5209.6595 without restraints) Performing minimization step: 4371. Total energy = 5210.8021 kcal/mol (5209.0398 without restraints) Performing minimization step: 4372. Total energy = 5210.1836 kcal/mol (5208.4218 without restraints) Performing minimization step: 4373. Total energy = 5209.5646 kcal/mol (5207.8033 without restraints) Performing minimization step: 4374. Total energy = 5208.9462 kcal/mol (5207.1854 without restraints) Performing minimization step: 4375. Total energy = 5208.3281 kcal/mol (5206.5678 without restraints) Performing minimization step: 4376. Total energy = 5207.7105 kcal/mol (5205.9509 without restraints) Performing minimization step: 4377. Total energy = 5207.0933 kcal/mol (5205.3342 without restraints) Performing minimization step: 4378. Total energy = 5206.4762 kcal/mol (5204.7176 without restraints) Performing minimization step: 4379. Total energy = 5205.8603 kcal/mol (5204.1023 without restraints) Performing minimization step: 4380. Total energy = 5205.2447 kcal/mol (5203.4873 without restraints) Performing minimization step: 4381. Total energy = 5204.6289 kcal/mol (5202.8719 without restraints) Performing minimization step: 4382. Total energy = 5204.0131 kcal/mol (5202.2565 without restraints) Performing minimization step: 4383. Total energy = 5203.3980 kcal/mol (5201.6421 without restraints) Performing minimization step: 4384. Total energy = 5202.7838 kcal/mol (5201.0284 without restraints) Performing minimization step: 4385. Total energy = 5202.1700 kcal/mol (5200.4153 without restraints) Performing minimization step: 4386. Total energy = 5201.5567 kcal/mol (5199.8024 without restraints) Performing minimization step: 4387. Total energy = 5200.9436 kcal/mol (5199.1898 without restraints) Performing minimization step: 4388. Total energy = 5200.3308 kcal/mol (5198.5776 without restraints) Performing minimization step: 4389. Total energy = 5199.7182 kcal/mol (5197.9655 without restraints) Performing minimization step: 4390. Total energy = 5199.1061 kcal/mol (5197.3539 without restraints) Performing minimization step: 4391. Total energy = 5198.4942 kcal/mol (5196.7425 without restraints) Performing minimization step: 4392. Total energy = 5197.8832 kcal/mol (5196.1321 without restraints) Performing minimization step: 4393. Total energy = 5197.2725 kcal/mol (5195.5219 without restraints) Performing minimization step: 4394. Total energy = 5196.6620 kcal/mol (5194.9119 without restraints) Performing minimization step: 4395. Total energy = 5196.0518 kcal/mol (5194.3023 without restraints) Performing minimization step: 4396. Total energy = 5195.4424 kcal/mol (5193.6933 without restraints) Performing minimization step: 4397. Total energy = 5194.8330 kcal/mol (5193.0846 without restraints) Performing minimization step: 4398. Total energy = 5194.2242 kcal/mol (5192.4763 without restraints) Performing minimization step: 4399. Total energy = 5193.6157 kcal/mol (5191.8683 without restraints) Performing minimization step: 4400. Total energy = 5193.0082 kcal/mol (5191.2613 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 5192.4005 kcal/mol (5190.6542 without restraints) Performing minimization step: 4402. Total energy = 5191.7935 kcal/mol (5190.0477 without restraints) Performing minimization step: 4403. Total energy = 5191.1869 kcal/mol (5189.4416 without restraints) Performing minimization step: 4404. Total energy = 5190.5807 kcal/mol (5188.8359 without restraints) Performing minimization step: 4405. Total energy = 5189.9746 kcal/mol (5188.2304 without restraints) Performing minimization step: 4406. Total energy = 5189.3691 kcal/mol (5187.6254 without restraints) Performing minimization step: 4407. Total energy = 5188.7637 kcal/mol (5187.0206 without restraints) Performing minimization step: 4408. Total energy = 5188.1591 kcal/mol (5186.4164 without restraints) Performing minimization step: 4409. Total energy = 5187.5550 kcal/mol (5185.8129 without restraints) Performing minimization step: 4410. Total energy = 5186.9510 kcal/mol (5185.2094 without restraints) Performing minimization step: 4411. Total energy = 5186.3473 kcal/mol (5184.6062 without restraints) Performing minimization step: 4412. Total energy = 5185.7443 kcal/mol (5184.0037 without restraints) Performing minimization step: 4413. Total energy = 5185.1416 kcal/mol (5183.4016 without restraints) Performing minimization step: 4414. Total energy = 5184.5393 kcal/mol (5182.7998 without restraints) Performing minimization step: 4415. Total energy = 5183.9370 kcal/mol (5182.1980 without restraints) Performing minimization step: 4416. Total energy = 5183.3356 kcal/mol (5181.5972 without restraints) Performing minimization step: 4417. Total energy = 5182.7345 kcal/mol (5180.9966 without restraints) Performing minimization step: 4418. Total energy = 5182.1337 kcal/mol (5180.3962 without restraints) Performing minimization step: 4419. Total energy = 5181.5333 kcal/mol (5179.7964 without restraints) Performing minimization step: 4420. Total energy = 5180.9331 kcal/mol (5179.1967 without restraints) Performing minimization step: 4421. Total energy = 5180.3335 kcal/mol (5178.5976 without restraints) Performing minimization step: 4422. Total energy = 5179.7347 kcal/mol (5177.9994 without restraints) Performing minimization step: 4423. Total energy = 5179.1357 kcal/mol (5177.4009 without restraints) Performing minimization step: 4424. Total energy = 5178.5373 kcal/mol (5176.8029 without restraints) Performing minimization step: 4425. Total energy = 5177.9395 kcal/mol (5176.2059 without restraints) Performing minimization step: 4426. Total energy = 5177.3426 kcal/mol (5175.6094 without restraints) Performing minimization step: 4427. Total energy = 5176.7454 kcal/mol (5175.0127 without restraints) Performing minimization step: 4428. Total energy = 5176.1483 kcal/mol (5174.4161 without restraints) Performing minimization step: 4429. Total energy = 5175.5519 kcal/mol (5173.8202 without restraints) Performing minimization step: 4430. Total energy = 5174.9562 kcal/mol (5173.2251 without restraints) Performing minimization step: 4431. Total energy = 5174.3611 kcal/mol (5172.6306 without restraints) Performing minimization step: 4432. Total energy = 5173.7657 kcal/mol (5172.0355 without restraints) Performing minimization step: 4433. Total energy = 5173.1709 kcal/mol (5171.4414 without restraints) Performing minimization step: 4434. Total energy = 5172.5765 kcal/mol (5170.8475 without restraints) Performing minimization step: 4435. Total energy = 5171.9822 kcal/mol (5170.2537 without restraints) Performing minimization step: 4436. Total energy = 5171.3888 kcal/mol (5169.6610 without restraints) Performing minimization step: 4437. Total energy = 5170.7958 kcal/mol (5169.0683 without restraints) Performing minimization step: 4438. Total energy = 5170.2032 kcal/mol (5168.4762 without restraints) Performing minimization step: 4439. Total energy = 5169.6108 kcal/mol (5167.8844 without restraints) Performing minimization step: 4440. Total energy = 5169.0190 kcal/mol (5167.2931 without restraints) Performing minimization step: 4441. Total energy = 5168.4275 kcal/mol (5166.7021 without restraints) Performing minimization step: 4442. Total energy = 5167.8360 kcal/mol (5166.1111 without restraints) Performing minimization step: 4443. Total energy = 5167.2454 kcal/mol (5165.5210 without restraints) Performing minimization step: 4444. Total energy = 5166.6557 kcal/mol (5164.9319 without restraints) Performing minimization step: 4445. Total energy = 5166.0662 kcal/mol (5164.3429 without restraints) Performing minimization step: 4446. Total energy = 5165.4769 kcal/mol (5163.7541 without restraints) Performing minimization step: 4447. Total energy = 5164.8879 kcal/mol (5163.1656 without restraints) Performing minimization step: 4448. Total energy = 5164.2988 kcal/mol (5162.5770 without restraints) Performing minimization step: 4449. Total energy = 5163.7098 kcal/mol (5161.9886 without restraints) Performing minimization step: 4450. Total energy = 5163.1219 kcal/mol (5161.4015 without restraints) Performing minimization step: 4451. Total energy = 5162.5347 kcal/mol (5160.8144 without restraints) Performing minimization step: 4452. Total energy = 5161.9475 kcal/mol (5160.2277 without restraints) Performing minimization step: 4453. Total energy = 5161.3605 kcal/mol (5159.6413 without restraints) Performing minimization step: 4454. Total energy = 5160.7740 kcal/mol (5159.0552 without restraints) Performing minimization step: 4455. Total energy = 5160.1878 kcal/mol (5158.4696 without restraints) Performing minimization step: 4456. Total energy = 5159.6024 kcal/mol (5157.8847 without restraints) Performing minimization step: 4457. Total energy = 5159.0169 kcal/mol (5157.2998 without restraints) Performing minimization step: 4458. Total energy = 5158.4318 kcal/mol (5156.7153 without restraints) Performing minimization step: 4459. Total energy = 5157.8475 kcal/mol (5156.1314 without restraints) Performing minimization step: 4460. Total energy = 5157.2636 kcal/mol (5155.5479 without restraints) Performing minimization step: 4461. Total energy = 5156.6795 kcal/mol (5154.9644 without restraints) Performing minimization step: 4462. Total energy = 5156.0962 kcal/mol (5154.3815 without restraints) Performing minimization step: 4463. Total energy = 5155.5131 kcal/mol (5153.7990 without restraints) Performing minimization step: 4464. Total energy = 5154.9305 kcal/mol (5153.2169 without restraints) Performing minimization step: 4465. Total energy = 5154.3483 kcal/mol (5152.6352 without restraints) Performing minimization step: 4466. Total energy = 5153.7665 kcal/mol (5152.0539 without restraints) Performing minimization step: 4467. Total energy = 5153.1849 kcal/mol (5151.4729 without restraints) Performing minimization step: 4468. Total energy = 5152.6040 kcal/mol (5150.8925 without restraints) Performing minimization step: 4469. Total energy = 5152.0233 kcal/mol (5150.3122 without restraints) Performing minimization step: 4470. Total energy = 5151.4429 kcal/mol (5149.7324 without restraints) Performing minimization step: 4471. Total energy = 5150.8634 kcal/mol (5149.1533 without restraints) Performing minimization step: 4472. Total energy = 5150.2840 kcal/mol (5148.5744 without restraints) Performing minimization step: 4473. Total energy = 5149.7048 kcal/mol (5147.9959 without restraints) Performing minimization step: 4474. Total energy = 5149.1264 kcal/mol (5147.4179 without restraints) Performing minimization step: 4475. Total energy = 5148.5483 kcal/mol (5146.8404 without restraints) Performing minimization step: 4476. Total energy = 5147.9704 kcal/mol (5146.2629 without restraints) Performing minimization step: 4477. Total energy = 5147.3933 kcal/mol (5145.6864 without restraints) Performing minimization step: 4478. Total energy = 5146.8160 kcal/mol (5145.1095 without restraints) Performing minimization step: 4479. Total energy = 5146.2391 kcal/mol (5144.5331 without restraints) Performing minimization step: 4480. Total energy = 5145.6628 kcal/mol (5143.9573 without restraints) Performing minimization step: 4481. Total energy = 5145.0864 kcal/mol (5143.3814 without restraints) Performing minimization step: 4482. Total energy = 5144.5110 kcal/mol (5142.8066 without restraints) Performing minimization step: 4483. Total energy = 5143.9358 kcal/mol (5142.2317 without restraints) Performing minimization step: 4484. Total energy = 5143.3609 kcal/mol (5141.6574 without restraints) Performing minimization step: 4485. Total energy = 5142.7862 kcal/mol (5141.0833 without restraints) Performing minimization step: 4486. Total energy = 5142.2120 kcal/mol (5140.5095 without restraints) Performing minimization step: 4487. Total energy = 5141.6388 kcal/mol (5139.9368 without restraints) Performing minimization step: 4488. Total energy = 5141.0655 kcal/mol (5139.3640 without restraints) Performing minimization step: 4489. Total energy = 5140.4926 kcal/mol (5138.7916 without restraints) Performing minimization step: 4490. Total energy = 5139.9200 kcal/mol (5138.2198 without restraints) Performing minimization step: 4491. Total energy = 5139.3481 kcal/mol (5137.6482 without restraints) Performing minimization step: 4492. Total energy = 5138.7769 kcal/mol (5137.0774 without restraints) Performing minimization step: 4493. Total energy = 5138.2055 kcal/mol (5136.5066 without restraints) Performing minimization step: 4494. Total energy = 5137.6343 kcal/mol (5135.9359 without restraints) Performing minimization step: 4495. Total energy = 5137.0638 kcal/mol (5135.3661 without restraints) Performing minimization step: 4496. Total energy = 5136.4941 kcal/mol (5134.7967 without restraints) Performing minimization step: 4497. Total energy = 5135.9243 kcal/mol (5134.2273 without restraints) Performing minimization step: 4498. Total energy = 5135.3543 kcal/mol (5133.6578 without restraints) Performing minimization step: 4499. Total energy = 5134.7851 kcal/mol (5133.0892 without restraints) Performing minimization step: 4500. Total energy = 5134.2162 kcal/mol (5132.5207 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 5133.6476 kcal/mol (5131.9526 without restraints) Performing minimization step: 4502. Total energy = 5133.0794 kcal/mol (5131.3851 without restraints) Performing minimization step: 4503. Total energy = 5132.5118 kcal/mol (5130.8179 without restraints) Performing minimization step: 4504. Total energy = 5131.9447 kcal/mol (5130.2515 without restraints) Performing minimization step: 4505. Total energy = 5131.3777 kcal/mol (5129.6848 without restraints) Performing minimization step: 4506. Total energy = 5130.8110 kcal/mol (5129.1185 without restraints) Performing minimization step: 4507. Total energy = 5130.2448 kcal/mol (5128.5529 without restraints) Performing minimization step: 4508. Total energy = 5129.6795 kcal/mol (5127.9882 without restraints) Performing minimization step: 4509. Total energy = 5129.1140 kcal/mol (5127.4230 without restraints) Performing minimization step: 4510. Total energy = 5128.5488 kcal/mol (5126.8583 without restraints) Performing minimization step: 4511. Total energy = 5127.9840 kcal/mol (5126.2940 without restraints) Performing minimization step: 4512. Total energy = 5127.4198 kcal/mol (5125.7303 without restraints) Performing minimization step: 4513. Total energy = 5126.8559 kcal/mol (5125.1669 without restraints) Performing minimization step: 4514. Total energy = 5126.2925 kcal/mol (5124.6041 without restraints) Performing minimization step: 4515. Total energy = 5125.7297 kcal/mol (5124.0417 without restraints) Performing minimization step: 4516. Total energy = 5125.1671 kcal/mol (5123.4796 without restraints) Performing minimization step: 4517. Total energy = 5124.6052 kcal/mol (5122.9182 without restraints) Performing minimization step: 4518. Total energy = 5124.0438 kcal/mol (5122.3575 without restraints) Performing minimization step: 4519. Total energy = 5123.4825 kcal/mol (5121.7965 without restraints) Performing minimization step: 4520. Total energy = 5122.9210 kcal/mol (5121.2355 without restraints) Performing minimization step: 4521. Total energy = 5122.3599 kcal/mol (5120.6748 without restraints) Performing minimization step: 4522. Total energy = 5121.7995 kcal/mol (5120.1151 without restraints) Performing minimization step: 4523. Total energy = 5121.2397 kcal/mol (5119.5557 without restraints) Performing minimization step: 4524. Total energy = 5120.6795 kcal/mol (5118.9959 without restraints) Performing minimization step: 4525. Total energy = 5120.1198 kcal/mol (5118.4367 without restraints) Performing minimization step: 4526. Total energy = 5119.5607 kcal/mol (5117.8780 without restraints) Performing minimization step: 4527. Total energy = 5119.0022 kcal/mol (5117.3201 without restraints) Performing minimization step: 4528. Total energy = 5118.4438 kcal/mol (5116.7624 without restraints) Performing minimization step: 4529. Total energy = 5117.8862 kcal/mol (5116.2050 without restraints) Performing minimization step: 4530. Total energy = 5117.3290 kcal/mol (5115.6484 without restraints) Performing minimization step: 4531. Total energy = 5116.7719 kcal/mol (5115.0916 without restraints) Performing minimization step: 4532. Total energy = 5116.2147 kcal/mol (5114.5351 without restraints) Performing minimization step: 4533. Total energy = 5115.6585 kcal/mol (5113.9793 without restraints) Performing minimization step: 4534. Total energy = 5115.1022 kcal/mol (5113.4235 without restraints) Performing minimization step: 4535. Total energy = 5114.5464 kcal/mol (5112.8683 without restraints) Performing minimization step: 4536. Total energy = 5113.9909 kcal/mol (5112.3132 without restraints) Performing minimization step: 4537. Total energy = 5113.4357 kcal/mol (5111.7584 without restraints) Performing minimization step: 4538. Total energy = 5112.8812 kcal/mol (5111.2044 without restraints) Performing minimization step: 4539. Total energy = 5112.3269 kcal/mol (5110.6505 without restraints) Performing minimization step: 4540. Total energy = 5111.7727 kcal/mol (5110.0969 without restraints) Performing minimization step: 4541. Total energy = 5111.2193 kcal/mol (5109.5441 without restraints) Performing minimization step: 4542. Total energy = 5110.6662 kcal/mol (5108.9914 without restraints) Performing minimization step: 4543. Total energy = 5110.1131 kcal/mol (5108.4387 without restraints) Performing minimization step: 4544. Total energy = 5109.5603 kcal/mol (5107.8864 without restraints) Performing minimization step: 4545. Total energy = 5109.0079 kcal/mol (5107.3346 without restraints) Performing minimization step: 4546. Total energy = 5108.4560 kcal/mol (5106.7831 without restraints) Performing minimization step: 4547. Total energy = 5107.9044 kcal/mol (5106.2320 without restraints) Performing minimization step: 4548. Total energy = 5107.3533 kcal/mol (5105.6813 without restraints) Performing minimization step: 4549. Total energy = 5106.8026 kcal/mol (5105.1311 without restraints) Performing minimization step: 4550. Total energy = 5106.2525 kcal/mol (5104.5815 without restraints) Performing minimization step: 4551. Total energy = 5105.7022 kcal/mol (5104.0319 without restraints) Performing minimization step: 4552. Total energy = 5105.1530 kcal/mol (5103.4832 without restraints) Performing minimization step: 4553. Total energy = 5104.6039 kcal/mol (5102.9344 without restraints) Performing minimization step: 4554. Total energy = 5104.0553 kcal/mol (5102.3863 without restraints) Performing minimization step: 4555. Total energy = 5103.5070 kcal/mol (5101.8385 without restraints) Performing minimization step: 4556. Total energy = 5102.9587 kcal/mol (5101.2907 without restraints) Performing minimization step: 4557. Total energy = 5102.4109 kcal/mol (5100.7434 without restraints) Performing minimization step: 4558. Total energy = 5101.8637 kcal/mol (5100.1967 without restraints) Performing minimization step: 4559. Total energy = 5101.3163 kcal/mol (5099.6498 without restraints) Performing minimization step: 4560. Total energy = 5100.7698 kcal/mol (5099.1037 without restraints) Performing minimization step: 4561. Total energy = 5100.2235 kcal/mol (5098.5578 without restraints) Performing minimization step: 4562. Total energy = 5099.6779 kcal/mol (5098.0127 without restraints) Performing minimization step: 4563. Total energy = 5099.1321 kcal/mol (5097.4674 without restraints) Performing minimization step: 4564. Total energy = 5098.5869 kcal/mol (5096.9229 without restraints) Performing minimization step: 4565. Total energy = 5098.0425 kcal/mol (5096.3787 without restraints) Performing minimization step: 4566. Total energy = 5097.4978 kcal/mol (5095.8345 without restraints) Performing minimization step: 4567. Total energy = 5096.9539 kcal/mol (5095.2912 without restraints) Performing minimization step: 4568. Total energy = 5096.4101 kcal/mol (5094.7477 without restraints) Performing minimization step: 4569. Total energy = 5095.8663 kcal/mol (5094.2045 without restraints) Performing minimization step: 4570. Total energy = 5095.3235 kcal/mol (5093.6621 without restraints) Performing minimization step: 4571. Total energy = 5094.7806 kcal/mol (5093.1197 without restraints) Performing minimization step: 4572. Total energy = 5094.2381 kcal/mol (5092.5777 without restraints) Performing minimization step: 4573. Total energy = 5093.6964 kcal/mol (5092.0364 without restraints) Performing minimization step: 4574. Total energy = 5093.1548 kcal/mol (5091.4953 without restraints) Performing minimization step: 4575. Total energy = 5092.6137 kcal/mol (5090.9547 without restraints) Performing minimization step: 4576. Total energy = 5092.0724 kcal/mol (5090.4139 without restraints) Performing minimization step: 4577. Total energy = 5091.5316 kcal/mol (5089.8735 without restraints) Performing minimization step: 4578. Total energy = 5090.9914 kcal/mol (5089.3338 without restraints) Performing minimization step: 4579. Total energy = 5090.4511 kcal/mol (5088.7939 without restraints) Performing minimization step: 4580. Total energy = 5089.9116 kcal/mol (5088.2550 without restraints) Performing minimization step: 4581. Total energy = 5089.3727 kcal/mol (5087.7165 without restraints) Performing minimization step: 4582. Total energy = 5088.8341 kcal/mol (5087.1784 without restraints) Performing minimization step: 4583. Total energy = 5088.2958 kcal/mol (5086.6405 without restraints) Performing minimization step: 4584. Total energy = 5087.7577 kcal/mol (5086.1029 without restraints) Performing minimization step: 4585. Total energy = 5087.2198 kcal/mol (5085.5655 without restraints) Performing minimization step: 4586. Total energy = 5086.6825 kcal/mol (5085.0286 without restraints) Performing minimization step: 4587. Total energy = 5086.1452 kcal/mol (5084.4915 without restraints) Performing minimization step: 4588. Total energy = 5085.6078 kcal/mol (5083.9549 without restraints) Performing minimization step: 4589. Total energy = 5085.0713 kcal/mol (5083.4189 without restraints) Performing minimization step: 4590. Total energy = 5084.5354 kcal/mol (5082.8835 without restraints) Performing minimization step: 4591. Total energy = 5083.9996 kcal/mol (5082.3482 without restraints) Performing minimization step: 4592. Total energy = 5083.4648 kcal/mol (5081.8140 without restraints) Performing minimization step: 4593. Total energy = 5082.9301 kcal/mol (5081.2796 without restraints) Performing minimization step: 4594. Total energy = 5082.3960 kcal/mol (5080.7462 without restraints) Performing minimization step: 4595. Total energy = 5081.8624 kcal/mol (5080.2128 without restraints) Performing minimization step: 4596. Total energy = 5081.3290 kcal/mol (5079.6799 without restraints) Performing minimization step: 4597. Total energy = 5080.7952 kcal/mol (5079.1466 without restraints) Performing minimization step: 4598. Total energy = 5080.2624 kcal/mol (5078.6142 without restraints) Performing minimization step: 4599. Total energy = 5079.7297 kcal/mol (5078.0823 without restraints) Performing minimization step: 4600. Total energy = 5079.1976 kcal/mol (5077.5504 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 5078.6656 kcal/mol (5077.0188 without restraints) Performing minimization step: 4602. Total energy = 5078.1336 kcal/mol (5076.4873 without restraints) Performing minimization step: 4603. Total energy = 5077.6020 kcal/mol (5075.9561 without restraints) Performing minimization step: 4604. Total energy = 5077.0710 kcal/mol (5075.4255 without restraints) Performing minimization step: 4605. Total energy = 5076.5407 kcal/mol (5074.8957 without restraints) Performing minimization step: 4606. Total energy = 5076.0103 kcal/mol (5074.3659 without restraints) Performing minimization step: 4607. Total energy = 5075.4806 kcal/mol (5073.8367 without restraints) Performing minimization step: 4608. Total energy = 5074.9511 kcal/mol (5073.3075 without restraints) Performing minimization step: 4609. Total energy = 5074.4218 kcal/mol (5072.7787 without restraints) Performing minimization step: 4610. Total energy = 5073.8930 kcal/mol (5072.2505 without restraints) Performing minimization step: 4611. Total energy = 5073.3643 kcal/mol (5071.7221 without restraints) Performing minimization step: 4612. Total energy = 5072.8360 kcal/mol (5071.1943 without restraints) Performing minimization step: 4613. Total energy = 5072.3084 kcal/mol (5070.6671 without restraints) Performing minimization step: 4614. Total energy = 5071.7807 kcal/mol (5070.1398 without restraints) Performing minimization step: 4615. Total energy = 5071.2531 kcal/mol (5069.6126 without restraints) Performing minimization step: 4616. Total energy = 5070.7258 kcal/mol (5069.0858 without restraints) Performing minimization step: 4617. Total energy = 5070.1993 kcal/mol (5068.5600 without restraints) Performing minimization step: 4618. Total energy = 5069.6732 kcal/mol (5068.0342 without restraints) Performing minimization step: 4619. Total energy = 5069.1476 kcal/mol (5067.5091 without restraints) Performing minimization step: 4620. Total energy = 5068.6219 kcal/mol (5066.9840 without restraints) Performing minimization step: 4621. Total energy = 5068.0969 kcal/mol (5066.4593 without restraints) Performing minimization step: 4622. Total energy = 5067.5723 kcal/mol (5065.9351 without restraints) Performing minimization step: 4623. Total energy = 5067.0480 kcal/mol (5065.4113 without restraints) Performing minimization step: 4624. Total energy = 5066.5239 kcal/mol (5064.8877 without restraints) Performing minimization step: 4625. Total energy = 5066.0005 kcal/mol (5064.3648 without restraints) Performing minimization step: 4626. Total energy = 5065.4769 kcal/mol (5063.8417 without restraints) Performing minimization step: 4627. Total energy = 5064.9538 kcal/mol (5063.3189 without restraints) Performing minimization step: 4628. Total energy = 5064.4310 kcal/mol (5062.7966 without restraints) Performing minimization step: 4629. Total energy = 5063.9084 kcal/mol (5062.2745 without restraints) Performing minimization step: 4630. Total energy = 5063.3862 kcal/mol (5061.7528 without restraints) Performing minimization step: 4631. Total energy = 5062.8645 kcal/mol (5061.2315 without restraints) Performing minimization step: 4632. Total energy = 5062.3430 kcal/mol (5060.7105 without restraints) Performing minimization step: 4633. Total energy = 5061.8223 kcal/mol (5060.1902 without restraints) Performing minimization step: 4634. Total energy = 5061.3016 kcal/mol (5059.6700 without restraints) Performing minimization step: 4635. Total energy = 5060.7807 kcal/mol (5059.1495 without restraints) Performing minimization step: 4636. Total energy = 5060.2605 kcal/mol (5058.6298 without restraints) Performing minimization step: 4637. Total energy = 5059.7410 kcal/mol (5058.1108 without restraints) Performing minimization step: 4638. Total energy = 5059.2217 kcal/mol (5057.5918 without restraints) Performing minimization step: 4639. Total energy = 5058.7024 kcal/mol (5057.0730 without restraints) Performing minimization step: 4640. Total energy = 5058.1839 kcal/mol (5056.5550 without restraints) Performing minimization step: 4641. Total energy = 5057.6657 kcal/mol (5056.0372 without restraints) Performing minimization step: 4642. Total energy = 5057.1481 kcal/mol (5055.5201 without restraints) Performing minimization step: 4643. Total energy = 5056.6304 kcal/mol (5055.0029 without restraints) Performing minimization step: 4644. Total energy = 5056.1130 kcal/mol (5054.4858 without restraints) Performing minimization step: 4645. Total energy = 5055.5955 kcal/mol (5053.9688 without restraints) Performing minimization step: 4646. Total energy = 5055.0789 kcal/mol (5053.4526 without restraints) Performing minimization step: 4647. Total energy = 5054.5628 kcal/mol (5052.9370 without restraints) Performing minimization step: 4648. Total energy = 5054.0469 kcal/mol (5052.4215 without restraints) Performing minimization step: 4649. Total energy = 5053.5311 kcal/mol (5051.9063 without restraints) Performing minimization step: 4650. Total energy = 5053.0161 kcal/mol (5051.3917 without restraints) Performing minimization step: 4651. Total energy = 5052.5010 kcal/mol (5050.8770 without restraints) Performing minimization step: 4652. Total energy = 5051.9869 kcal/mol (5050.3633 without restraints) Performing minimization step: 4653. Total energy = 5051.4724 kcal/mol (5049.8493 without restraints) Performing minimization step: 4654. Total energy = 5050.9589 kcal/mol (5049.3363 without restraints) Performing minimization step: 4655. Total energy = 5050.4456 kcal/mol (5048.8235 without restraints) Performing minimization step: 4656. Total energy = 5049.9329 kcal/mol (5048.3111 without restraints) Performing minimization step: 4657. Total energy = 5049.4198 kcal/mol (5047.7984 without restraints) Performing minimization step: 4658. Total energy = 5048.9071 kcal/mol (5047.2864 without restraints) Performing minimization step: 4659. Total energy = 5048.3948 kcal/mol (5046.7743 without restraints) Performing minimization step: 4660. Total energy = 5047.8830 kcal/mol (5046.2632 without restraints) Performing minimization step: 4661. Total energy = 5047.3719 kcal/mol (5045.7524 without restraints) Performing minimization step: 4662. Total energy = 5046.8608 kcal/mol (5045.2417 without restraints) Performing minimization step: 4663. Total energy = 5046.3497 kcal/mol (5044.7311 without restraints) Performing minimization step: 4664. Total energy = 5045.8390 kcal/mol (5044.2209 without restraints) Performing minimization step: 4665. Total energy = 5045.3287 kcal/mol (5043.7109 without restraints) Performing minimization step: 4666. Total energy = 5044.8186 kcal/mol (5043.2013 without restraints) Performing minimization step: 4667. Total energy = 5044.3085 kcal/mol (5042.6915 without restraints) Performing minimization step: 4668. Total energy = 5043.7993 kcal/mol (5042.1828 without restraints) Performing minimization step: 4669. Total energy = 5043.2902 kcal/mol (5041.6742 without restraints) Performing minimization step: 4670. Total energy = 5042.7813 kcal/mol (5041.1659 without restraints) Performing minimization step: 4671. Total energy = 5042.2735 kcal/mol (5040.6585 without restraints) Performing minimization step: 4672. Total energy = 5041.7660 kcal/mol (5040.1514 without restraints) Performing minimization step: 4673. Total energy = 5041.2584 kcal/mol (5039.6441 without restraints) Performing minimization step: 4674. Total energy = 5040.7517 kcal/mol (5039.1380 without restraints) Performing minimization step: 4675. Total energy = 5040.2450 kcal/mol (5038.6317 without restraints) Performing minimization step: 4676. Total energy = 5039.7382 kcal/mol (5038.1252 without restraints) Performing minimization step: 4677. Total energy = 5039.2318 kcal/mol (5037.6195 without restraints) Performing minimization step: 4678. Total energy = 5038.7261 kcal/mol (5037.1140 without restraints) Performing minimization step: 4679. Total energy = 5038.2203 kcal/mol (5036.6087 without restraints) Performing minimization step: 4680. Total energy = 5037.7148 kcal/mol (5036.1036 without restraints) Performing minimization step: 4681. Total energy = 5037.2107 kcal/mol (5035.6000 without restraints) Performing minimization step: 4682. Total energy = 5036.7063 kcal/mol (5035.0960 without restraints) Performing minimization step: 4683. Total energy = 5036.2018 kcal/mol (5034.5920 without restraints) Performing minimization step: 4684. Total energy = 5035.6973 kcal/mol (5034.0879 without restraints) Performing minimization step: 4685. Total energy = 5035.1933 kcal/mol (5033.5842 without restraints) Performing minimization step: 4686. Total energy = 5034.6896 kcal/mol (5033.0811 without restraints) Performing minimization step: 4687. Total energy = 5034.1866 kcal/mol (5032.5784 without restraints) Performing minimization step: 4688. Total energy = 5033.6837 kcal/mol (5032.0760 without restraints) Performing minimization step: 4689. Total energy = 5033.1816 kcal/mol (5031.5745 without restraints) Performing minimization step: 4690. Total energy = 5032.6798 kcal/mol (5031.0730 without restraints) Performing minimization step: 4691. Total energy = 5032.1777 kcal/mol (5030.5714 without restraints) Performing minimization step: 4692. Total energy = 5031.6762 kcal/mol (5030.0703 without restraints) Performing minimization step: 4693. Total energy = 5031.1757 kcal/mol (5029.5703 without restraints) Performing minimization step: 4694. Total energy = 5030.6753 kcal/mol (5029.0702 without restraints) Performing minimization step: 4695. Total energy = 5030.1747 kcal/mol (5028.5701 without restraints) Performing minimization step: 4696. Total energy = 5029.6745 kcal/mol (5028.0703 without restraints) Performing minimization step: 4697. Total energy = 5029.1748 kcal/mol (5027.5710 without restraints) Performing minimization step: 4698. Total energy = 5028.6754 kcal/mol (5027.0721 without restraints) Performing minimization step: 4699. Total energy = 5028.1762 kcal/mol (5026.5733 without restraints) Performing minimization step: 4700. Total energy = 5027.6777 kcal/mol (5026.0752 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 5027.1792 kcal/mol (5025.5772 without restraints) Performing minimization step: 4702. Total energy = 5026.6812 kcal/mol (5025.0796 without restraints) Performing minimization step: 4703. Total energy = 5026.1833 kcal/mol (5024.5821 without restraints) Performing minimization step: 4704. Total energy = 5025.6856 kcal/mol (5024.0849 without restraints) Performing minimization step: 4705. Total energy = 5025.1886 kcal/mol (5023.5882 without restraints) Performing minimization step: 4706. Total energy = 5024.6917 kcal/mol (5023.0919 without restraints) Performing minimization step: 4707. Total energy = 5024.1952 kcal/mol (5022.5957 without restraints) Performing minimization step: 4708. Total energy = 5023.6993 kcal/mol (5022.1003 without restraints) Performing minimization step: 4709. Total energy = 5023.2038 kcal/mol (5021.6053 without restraints) Performing minimization step: 4710. Total energy = 5022.7084 kcal/mol (5021.1102 without restraints) Performing minimization step: 4711. Total energy = 5022.2132 kcal/mol (5020.6154 without restraints) Performing minimization step: 4712. Total energy = 5021.7183 kcal/mol (5020.1208 without restraints) Performing minimization step: 4713. Total energy = 5021.2239 kcal/mol (5019.6270 without restraints) Performing minimization step: 4714. Total energy = 5020.7298 kcal/mol (5019.1334 without restraints) Performing minimization step: 4715. Total energy = 5020.2361 kcal/mol (5018.6400 without restraints) Performing minimization step: 4716. Total energy = 5019.7423 kcal/mol (5018.1466 without restraints) Performing minimization step: 4717. Total energy = 5019.2493 kcal/mol (5017.6541 without restraints) Performing minimization step: 4718. Total energy = 5018.7565 kcal/mol (5017.1617 without restraints) Performing minimization step: 4719. Total energy = 5018.2641 kcal/mol (5016.6698 without restraints) Performing minimization step: 4720. Total energy = 5017.7719 kcal/mol (5016.1780 without restraints) Performing minimization step: 4721. Total energy = 5017.2798 kcal/mol (5015.6863 without restraints) Performing minimization step: 4722. Total energy = 5016.7880 kcal/mol (5015.1949 without restraints) Performing minimization step: 4723. Total energy = 5016.2975 kcal/mol (5014.7048 without restraints) Performing minimization step: 4724. Total energy = 5015.8065 kcal/mol (5014.2142 without restraints) Performing minimization step: 4725. Total energy = 5015.3157 kcal/mol (5013.7238 without restraints) Performing minimization step: 4726. Total energy = 5014.8250 kcal/mol (5013.2336 without restraints) Performing minimization step: 4727. Total energy = 5014.3343 kcal/mol (5012.7433 without restraints) Performing minimization step: 4728. Total energy = 5013.8446 kcal/mol (5012.2541 without restraints) Performing minimization step: 4729. Total energy = 5013.3558 kcal/mol (5011.7658 without restraints) Performing minimization step: 4730. Total energy = 5012.8667 kcal/mol (5011.2770 without restraints) Performing minimization step: 4731. Total energy = 5012.3778 kcal/mol (5010.7886 without restraints) Performing minimization step: 4732. Total energy = 5011.8894 kcal/mol (5010.3006 without restraints) Performing minimization step: 4733. Total energy = 5011.4015 kcal/mol (5009.8130 without restraints) Performing minimization step: 4734. Total energy = 5010.9135 kcal/mol (5009.3255 without restraints) Performing minimization step: 4735. Total energy = 5010.4259 kcal/mol (5008.8382 without restraints) Performing minimization step: 4736. Total energy = 5009.9388 kcal/mol (5008.3516 without restraints) Performing minimization step: 4737. Total energy = 5009.4517 kcal/mol (5007.8649 without restraints) Performing minimization step: 4738. Total energy = 5008.9654 kcal/mol (5007.3791 without restraints) Performing minimization step: 4739. Total energy = 5008.4791 kcal/mol (5006.8929 without restraints) Performing minimization step: 4740. Total energy = 5007.9933 kcal/mol (5006.4080 without restraints) Performing minimization step: 4741. Total energy = 5007.5080 kcal/mol (5005.9229 without restraints) Performing minimization step: 4742. Total energy = 5007.0224 kcal/mol (5005.4377 without restraints) Performing minimization step: 4743. Total energy = 5006.5375 kcal/mol (5004.9534 without restraints) Performing minimization step: 4744. Total energy = 5006.0528 kcal/mol (5004.4689 without restraints) Performing minimization step: 4745. Total energy = 5005.5685 kcal/mol (5003.9850 without restraints) Performing minimization step: 4746. Total energy = 5005.0842 kcal/mol (5003.5010 without restraints) Performing minimization step: 4747. Total energy = 5004.6007 kcal/mol (5003.0181 without restraints) Performing minimization step: 4748. Total energy = 5004.1176 kcal/mol (5002.5354 without restraints) Performing minimization step: 4749. Total energy = 5003.6346 kcal/mol (5002.0528 without restraints) Performing minimization step: 4750. Total energy = 5003.1519 kcal/mol (5001.5705 without restraints) Performing minimization step: 4751. Total energy = 5002.6694 kcal/mol (5001.0884 without restraints) Performing minimization step: 4752. Total energy = 5002.1875 kcal/mol (5000.6069 without restraints) Performing minimization step: 4753. Total energy = 5001.7061 kcal/mol (5000.1260 without restraints) Performing minimization step: 4754. Total energy = 5001.2246 kcal/mol (4999.6449 without restraints) Performing minimization step: 4755. Total energy = 5000.7432 kcal/mol (4999.1639 without restraints) Performing minimization step: 4756. Total energy = 5000.2626 kcal/mol (4998.6837 without restraints) Performing minimization step: 4757. Total energy = 4999.7815 kcal/mol (4998.2031 without restraints) Performing minimization step: 4758. Total energy = 4999.3024 kcal/mol (4997.7244 without restraints) Performing minimization step: 4759. Total energy = 4998.8229 kcal/mol (4997.2453 without restraints) Performing minimization step: 4760. Total energy = 4998.3434 kcal/mol (4996.7662 without restraints) Performing minimization step: 4761. Total energy = 4997.8644 kcal/mol (4996.2876 without restraints) Performing minimization step: 4762. Total energy = 4997.3857 kcal/mol (4995.8092 without restraints) Performing minimization step: 4763. Total energy = 4996.9080 kcal/mol (4995.3321 without restraints) Performing minimization step: 4764. Total energy = 4996.4298 kcal/mol (4994.8542 without restraints) Performing minimization step: 4765. Total energy = 4995.9518 kcal/mol (4994.3765 without restraints) Performing minimization step: 4766. Total energy = 4995.4737 kcal/mol (4993.8988 without restraints) Performing minimization step: 4767. Total energy = 4994.9964 kcal/mol (4993.4221 without restraints) Performing minimization step: 4768. Total energy = 4994.5194 kcal/mol (4992.9456 without restraints) Performing minimization step: 4769. Total energy = 4994.0431 kcal/mol (4992.4695 without restraints) Performing minimization step: 4770. Total energy = 4993.5673 kcal/mol (4991.9942 without restraints) Performing minimization step: 4771. Total energy = 4993.0912 kcal/mol (4991.5186 without restraints) Performing minimization step: 4772. Total energy = 4992.6159 kcal/mol (4991.0437 without restraints) Performing minimization step: 4773. Total energy = 4992.1405 kcal/mol (4990.5685 without restraints) Performing minimization step: 4774. Total energy = 4991.6650 kcal/mol (4990.0934 without restraints) Performing minimization step: 4775. Total energy = 4991.1899 kcal/mol (4989.6187 without restraints) Performing minimization step: 4776. Total energy = 4990.7154 kcal/mol (4989.1447 without restraints) Performing minimization step: 4777. Total energy = 4990.2409 kcal/mol (4988.6705 without restraints) Performing minimization step: 4778. Total energy = 4989.7669 kcal/mol (4988.1969 without restraints) Performing minimization step: 4779. Total energy = 4989.2931 kcal/mol (4987.7235 without restraints) Performing minimization step: 4780. Total energy = 4988.8195 kcal/mol (4987.2504 without restraints) Performing minimization step: 4781. Total energy = 4988.3464 kcal/mol (4986.7778 without restraints) Performing minimization step: 4782. Total energy = 4987.8736 kcal/mol (4986.3052 without restraints) Performing minimization step: 4783. Total energy = 4987.4011 kcal/mol (4985.8331 without restraints) Performing minimization step: 4784. Total energy = 4986.9284 kcal/mol (4985.3609 without restraints) Performing minimization step: 4785. Total energy = 4986.4565 kcal/mol (4984.8896 without restraints) Performing minimization step: 4786. Total energy = 4985.9863 kcal/mol (4984.4196 without restraints) Performing minimization step: 4787. Total energy = 4985.5149 kcal/mol (4983.9486 without restraints) Performing minimization step: 4788. Total energy = 4985.0440 kcal/mol (4983.4781 without restraints) Performing minimization step: 4789. Total energy = 4984.5741 kcal/mol (4983.0085 without restraints) Performing minimization step: 4790. Total energy = 4984.1035 kcal/mol (4982.5384 without restraints) Performing minimization step: 4791. Total energy = 4983.6339 kcal/mol (4982.0692 without restraints) Performing minimization step: 4792. Total energy = 4983.1641 kcal/mol (4981.5998 without restraints) Performing minimization step: 4793. Total energy = 4982.6945 kcal/mol (4981.1305 without restraints) Performing minimization step: 4794. Total energy = 4982.2253 kcal/mol (4980.6619 without restraints) Performing minimization step: 4795. Total energy = 4981.7566 kcal/mol (4980.1935 without restraints) Performing minimization step: 4796. Total energy = 4981.2880 kcal/mol (4979.7254 without restraints) Performing minimization step: 4797. Total energy = 4980.8201 kcal/mol (4979.2579 without restraints) Performing minimization step: 4798. Total energy = 4980.3523 kcal/mol (4978.7904 without restraints) Performing minimization step: 4799. Total energy = 4979.8847 kcal/mol (4978.3232 without restraints) Performing minimization step: 4800. Total energy = 4979.4170 kcal/mol (4977.8558 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 4978.9500 kcal/mol (4977.3893 without restraints) Performing minimization step: 4802. Total energy = 4978.4833 kcal/mol (4976.9230 without restraints) Performing minimization step: 4803. Total energy = 4978.0173 kcal/mol (4976.4575 without restraints) Performing minimization step: 4804. Total energy = 4977.5512 kcal/mol (4975.9916 without restraints) Performing minimization step: 4805. Total energy = 4977.0852 kcal/mol (4975.5261 without restraints) Performing minimization step: 4806. Total energy = 4976.6200 kcal/mol (4975.0613 without restraints) Performing minimization step: 4807. Total energy = 4976.1547 kcal/mol (4974.5963 without restraints) Performing minimization step: 4808. Total energy = 4975.6898 kcal/mol (4974.1319 without restraints) Performing minimization step: 4809. Total energy = 4975.2247 kcal/mol (4973.6670 without restraints) Performing minimization step: 4810. Total energy = 4974.7609 kcal/mol (4973.2036 without restraints) Performing minimization step: 4811. Total energy = 4974.2973 kcal/mol (4972.7404 without restraints) Performing minimization step: 4812. Total energy = 4973.8339 kcal/mol (4972.2775 without restraints) Performing minimization step: 4813. Total energy = 4973.3706 kcal/mol (4971.8145 without restraints) Performing minimization step: 4814. Total energy = 4972.9077 kcal/mol (4971.3521 without restraints) Performing minimization step: 4815. Total energy = 4972.4449 kcal/mol (4970.8897 without restraints) Performing minimization step: 4816. Total energy = 4971.9824 kcal/mol (4970.4275 without restraints) Performing minimization step: 4817. Total energy = 4971.5202 kcal/mol (4969.9657 without restraints) Performing minimization step: 4818. Total energy = 4971.0582 kcal/mol (4969.5041 without restraints) Performing minimization step: 4819. Total energy = 4970.5962 kcal/mol (4969.0425 without restraints) Performing minimization step: 4820. Total energy = 4970.1350 kcal/mol (4968.5818 without restraints) Performing minimization step: 4821. Total energy = 4969.6743 kcal/mol (4968.1214 without restraints) Performing minimization step: 4822. Total energy = 4969.2132 kcal/mol (4967.6607 without restraints) Performing minimization step: 4823. Total energy = 4968.7531 kcal/mol (4967.2009 without restraints) Performing minimization step: 4824. Total energy = 4968.2928 kcal/mol (4966.7411 without restraints) Performing minimization step: 4825. Total energy = 4967.8331 kcal/mol (4966.2818 without restraints) Performing minimization step: 4826. Total energy = 4967.3735 kcal/mol (4965.8225 without restraints) Performing minimization step: 4827. Total energy = 4966.9142 kcal/mol (4965.3636 without restraints) Performing minimization step: 4828. Total energy = 4966.4556 kcal/mol (4964.9055 without restraints) Performing minimization step: 4829. Total energy = 4965.9969 kcal/mol (4964.4470 without restraints) Performing minimization step: 4830. Total energy = 4965.5385 kcal/mol (4963.9890 without restraints) Performing minimization step: 4831. Total energy = 4965.0803 kcal/mol (4963.5313 without restraints) Performing minimization step: 4832. Total energy = 4964.6229 kcal/mol (4963.0743 without restraints) Performing minimization step: 4833. Total energy = 4964.1653 kcal/mol (4962.6170 without restraints) Performing minimization step: 4834. Total energy = 4963.7077 kcal/mol (4962.1598 without restraints) Performing minimization step: 4835. Total energy = 4963.2510 kcal/mol (4961.7034 without restraints) Performing minimization step: 4836. Total energy = 4962.7942 kcal/mol (4961.2470 without restraints) Performing minimization step: 4837. Total energy = 4962.3380 kcal/mol (4960.7912 without restraints) Performing minimization step: 4838. Total energy = 4961.8819 kcal/mol (4960.3356 without restraints) Performing minimization step: 4839. Total energy = 4961.4262 kcal/mol (4959.8802 without restraints) Performing minimization step: 4840. Total energy = 4960.9715 kcal/mol (4959.4258 without restraints) Performing minimization step: 4841. Total energy = 4960.5165 kcal/mol (4958.9711 without restraints) Performing minimization step: 4842. Total energy = 4960.0614 kcal/mol (4958.5165 without restraints) Performing minimization step: 4843. Total energy = 4959.6074 kcal/mol (4958.0629 without restraints) Performing minimization step: 4844. Total energy = 4959.1530 kcal/mol (4957.6089 without restraints) Performing minimization step: 4845. Total energy = 4958.6989 kcal/mol (4957.1552 without restraints) Performing minimization step: 4846. Total energy = 4958.2451 kcal/mol (4956.7018 without restraints) Performing minimization step: 4847. Total energy = 4957.7915 kcal/mol (4956.2484 without restraints) Performing minimization step: 4848. Total energy = 4957.3380 kcal/mol (4955.7956 without restraints) Performing minimization step: 4849. Total energy = 4956.8853 kcal/mol (4955.3431 without restraints) Performing minimization step: 4850. Total energy = 4956.4329 kcal/mol (4954.8911 without restraints) Performing minimization step: 4851. Total energy = 4955.9807 kcal/mol (4954.4393 without restraints) Performing minimization step: 4852. Total energy = 4955.5288 kcal/mol (4953.9877 without restraints) Performing minimization step: 4853. Total energy = 4955.0769 kcal/mol (4953.5362 without restraints) Performing minimization step: 4854. Total energy = 4954.6257 kcal/mol (4953.0855 without restraints) Performing minimization step: 4855. Total energy = 4954.1746 kcal/mol (4952.6347 without restraints) Performing minimization step: 4856. Total energy = 4953.7238 kcal/mol (4952.1842 without restraints) Performing minimization step: 4857. Total energy = 4953.2730 kcal/mol (4951.7338 without restraints) Performing minimization step: 4858. Total energy = 4952.8229 kcal/mol (4951.2841 without restraints) Performing minimization step: 4859. Total energy = 4952.3729 kcal/mol (4950.8345 without restraints) Performing minimization step: 4860. Total energy = 4951.9234 kcal/mol (4950.3854 without restraints) Performing minimization step: 4861. Total energy = 4951.4742 kcal/mol (4949.9366 without restraints) Performing minimization step: 4862. Total energy = 4951.0252 kcal/mol (4949.4878 without restraints) Performing minimization step: 4863. Total energy = 4950.5767 kcal/mol (4949.0398 without restraints) Performing minimization step: 4864. Total energy = 4950.1281 kcal/mol (4948.5915 without restraints) Performing minimization step: 4865. Total energy = 4949.6801 kcal/mol (4948.1439 without restraints) Performing minimization step: 4866. Total energy = 4949.2327 kcal/mol (4947.6971 without restraints) Performing minimization step: 4867. Total energy = 4948.7859 kcal/mol (4947.2504 without restraints) Performing minimization step: 4868. Total energy = 4948.3383 kcal/mol (4946.8032 without restraints) Performing minimization step: 4869. Total energy = 4947.8909 kcal/mol (4946.3562 without restraints) Performing minimization step: 4870. Total energy = 4947.4443 kcal/mol (4945.9099 without restraints) Performing minimization step: 4871. Total energy = 4946.9978 kcal/mol (4945.4637 without restraints) Performing minimization step: 4872. Total energy = 4946.5514 kcal/mol (4945.0178 without restraints) Performing minimization step: 4873. Total energy = 4946.1054 kcal/mol (4944.5722 without restraints) Performing minimization step: 4874. Total energy = 4945.6598 kcal/mol (4944.1269 without restraints) Performing minimization step: 4875. Total energy = 4945.2145 kcal/mol (4943.6818 without restraints) Performing minimization step: 4876. Total energy = 4944.7692 kcal/mol (4943.2371 without restraints) Performing minimization step: 4877. Total energy = 4944.3243 kcal/mol (4942.7925 without restraints) Performing minimization step: 4878. Total energy = 4943.8802 kcal/mol (4942.3488 without restraints) Performing minimization step: 4879. Total energy = 4943.4362 kcal/mol (4941.9051 without restraints) Performing minimization step: 4880. Total energy = 4942.9921 kcal/mol (4941.4616 without restraints) Performing minimization step: 4881. Total energy = 4942.5491 kcal/mol (4941.0189 without restraints) Performing minimization step: 4882. Total energy = 4942.1059 kcal/mol (4940.5760 without restraints) Performing minimization step: 4883. Total energy = 4941.6632 kcal/mol (4940.1337 without restraints) Performing minimization step: 4884. Total energy = 4941.2204 kcal/mol (4939.6912 without restraints) Performing minimization step: 4885. Total energy = 4940.7778 kcal/mol (4939.2490 without restraints) Performing minimization step: 4886. Total energy = 4940.3359 kcal/mol (4938.8078 without restraints) Performing minimization step: 4887. Total energy = 4939.8942 kcal/mol (4938.3661 without restraints) Performing minimization step: 4888. Total energy = 4939.4525 kcal/mol (4937.9248 without restraints) Performing minimization step: 4889. Total energy = 4939.0113 kcal/mol (4937.4841 without restraints) Performing minimization step: 4890. Total energy = 4938.5703 kcal/mol (4937.0433 without restraints) Performing minimization step: 4891. Total energy = 4938.1297 kcal/mol (4936.6031 without restraints) Performing minimization step: 4892. Total energy = 4937.6892 kcal/mol (4936.1629 without restraints) Performing minimization step: 4893. Total energy = 4937.2489 kcal/mol (4935.7229 without restraints) Performing minimization step: 4894. Total energy = 4936.8090 kcal/mol (4935.2835 without restraints) Performing minimization step: 4895. Total energy = 4936.3695 kcal/mol (4934.8443 without restraints) Performing minimization step: 4896. Total energy = 4935.9310 kcal/mol (4934.4061 without restraints) Performing minimization step: 4897. Total energy = 4935.4919 kcal/mol (4933.9674 without restraints) Performing minimization step: 4898. Total energy = 4935.0530 kcal/mol (4933.5289 without restraints) Performing minimization step: 4899. Total energy = 4934.6144 kcal/mol (4933.0906 without restraints) Performing minimization step: 4900. Total energy = 4934.1760 kcal/mol (4932.6527 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 4933.7383 kcal/mol (4932.2154 without restraints) Performing minimization step: 4902. Total energy = 4933.3006 kcal/mol (4931.7779 without restraints) Performing minimization step: 4903. Total energy = 4932.8632 kcal/mol (4931.3409 without restraints) Performing minimization step: 4904. Total energy = 4932.4259 kcal/mol (4930.9041 without restraints) Performing minimization step: 4905. Total energy = 4931.9891 kcal/mol (4930.4675 without restraints) Performing minimization step: 4906. Total energy = 4931.5527 kcal/mol (4930.0315 without restraints) Performing minimization step: 4907. Total energy = 4931.1171 kcal/mol (4929.5963 without restraints) Performing minimization step: 4908. Total energy = 4930.6817 kcal/mol (4929.1612 without restraints) Performing minimization step: 4909. Total energy = 4930.2471 kcal/mol (4928.7269 without restraints) Performing minimization step: 4910. Total energy = 4929.8124 kcal/mol (4928.2927 without restraints) Performing minimization step: 4911. Total energy = 4929.3770 kcal/mol (4927.8576 without restraints) Performing minimization step: 4912. Total energy = 4928.9420 kcal/mol (4927.4229 without restraints) Performing minimization step: 4913. Total energy = 4928.5075 kcal/mol (4926.9887 without restraints) Performing minimization step: 4914. Total energy = 4928.0733 kcal/mol (4926.5548 without restraints) Performing minimization step: 4915. Total energy = 4927.6391 kcal/mol (4926.1211 without restraints) Performing minimization step: 4916. Total energy = 4927.2055 kcal/mol (4925.6880 without restraints) Performing minimization step: 4917. Total energy = 4926.7721 kcal/mol (4925.2548 without restraints) Performing minimization step: 4918. Total energy = 4926.3388 kcal/mol (4924.8219 without restraints) Performing minimization step: 4919. Total energy = 4925.9058 kcal/mol (4924.3892 without restraints) Performing minimization step: 4920. Total energy = 4925.4733 kcal/mol (4923.9571 without restraints) Performing minimization step: 4921. Total energy = 4925.0409 kcal/mol (4923.5250 without restraints) Performing minimization step: 4922. Total energy = 4924.6089 kcal/mol (4923.0934 without restraints) Performing minimization step: 4923. Total energy = 4924.1768 kcal/mol (4922.6615 without restraints) Performing minimization step: 4924. Total energy = 4923.7452 kcal/mol (4922.2303 without restraints) Performing minimization step: 4925. Total energy = 4923.3139 kcal/mol (4921.7994 without restraints) Performing minimization step: 4926. Total energy = 4922.8828 kcal/mol (4921.3687 without restraints) Performing minimization step: 4927. Total energy = 4922.4523 kcal/mol (4920.9385 without restraints) Performing minimization step: 4928. Total energy = 4922.0217 kcal/mol (4920.5083 without restraints) Performing minimization step: 4929. Total energy = 4921.5914 kcal/mol (4920.0782 without restraints) Performing minimization step: 4930. Total energy = 4921.1616 kcal/mol (4919.6490 without restraints) Performing minimization step: 4931. Total energy = 4920.7322 kcal/mol (4919.2198 without restraints) Performing minimization step: 4932. Total energy = 4920.3034 kcal/mol (4918.7913 without restraints) Performing minimization step: 4933. Total energy = 4919.8743 kcal/mol (4918.3625 without restraints) Performing minimization step: 4934. Total energy = 4919.4455 kcal/mol (4917.9342 without restraints) Performing minimization step: 4935. Total energy = 4919.0166 kcal/mol (4917.5056 without restraints) Performing minimization step: 4936. Total energy = 4918.5884 kcal/mol (4917.0777 without restraints) Performing minimization step: 4937. Total energy = 4918.1604 kcal/mol (4916.6501 without restraints) Performing minimization step: 4938. Total energy = 4917.7332 kcal/mol (4916.2233 without restraints) Performing minimization step: 4939. Total energy = 4917.3056 kcal/mol (4915.7959 without restraints) Performing minimization step: 4940. Total energy = 4916.8786 kcal/mol (4915.3693 without restraints) Performing minimization step: 4941. Total energy = 4916.4514 kcal/mol (4914.9424 without restraints) Performing minimization step: 4942. Total energy = 4916.0249 kcal/mol (4914.5163 without restraints) Performing minimization step: 4943. Total energy = 4915.5987 kcal/mol (4914.0905 without restraints) Performing minimization step: 4944. Total energy = 4915.1726 kcal/mol (4913.6647 without restraints) Performing minimization step: 4945. Total energy = 4914.7467 kcal/mol (4913.2392 without restraints) Performing minimization step: 4946. Total energy = 4914.3218 kcal/mol (4912.8148 without restraints) Performing minimization step: 4947. Total energy = 4913.8967 kcal/mol (4912.3899 without restraints) Performing minimization step: 4948. Total energy = 4913.4718 kcal/mol (4911.9653 without restraints) Performing minimization step: 4949. Total energy = 4913.0475 kcal/mol (4911.5414 without restraints) Performing minimization step: 4950. Total energy = 4912.6229 kcal/mol (4911.1170 without restraints) Performing minimization step: 4951. Total energy = 4912.1991 kcal/mol (4910.6936 without restraints) Performing minimization step: 4952. Total energy = 4911.7756 kcal/mol (4910.2705 without restraints) Performing minimization step: 4953. Total energy = 4911.3522 kcal/mol (4909.8474 without restraints) Performing minimization step: 4954. Total energy = 4910.9285 kcal/mol (4909.4239 without restraints) Performing minimization step: 4955. Total energy = 4910.5053 kcal/mol (4909.0013 without restraints) Performing minimization step: 4956. Total energy = 4910.0828 kcal/mol (4908.5789 without restraints) Performing minimization step: 4957. Total energy = 4909.6607 kcal/mol (4908.1572 without restraints) Performing minimization step: 4958. Total energy = 4909.2384 kcal/mol (4907.7352 without restraints) Performing minimization step: 4959. Total energy = 4908.8168 kcal/mol (4907.3140 without restraints) Performing minimization step: 4960. Total energy = 4908.3952 kcal/mol (4906.8927 without restraints) Performing minimization step: 4961. Total energy = 4907.9739 kcal/mol (4906.4718 without restraints) Performing minimization step: 4962. Total energy = 4907.5527 kcal/mol (4906.0509 without restraints) Performing minimization step: 4963. Total energy = 4907.1321 kcal/mol (4905.6307 without restraints) Performing minimization step: 4964. Total energy = 4906.7116 kcal/mol (4905.2106 without restraints) Performing minimization step: 4965. Total energy = 4906.2913 kcal/mol (4904.7906 without restraints) Performing minimization step: 4966. Total energy = 4905.8712 kcal/mol (4904.3708 without restraints) Performing minimization step: 4967. Total energy = 4905.4517 kcal/mol (4903.9517 without restraints) Performing minimization step: 4968. Total energy = 4905.0325 kcal/mol (4903.5329 without restraints) Performing minimization step: 4969. Total energy = 4904.6128 kcal/mol (4903.1134 without restraints) Performing minimization step: 4970. Total energy = 4904.1937 kcal/mol (4902.6947 without restraints) Performing minimization step: 4971. Total energy = 4903.7755 kcal/mol (4902.2767 without restraints) Performing minimization step: 4972. Total energy = 4903.3571 kcal/mol (4901.8587 without restraints) Performing minimization step: 4973. Total energy = 4902.9390 kcal/mol (4901.4410 without restraints) Performing minimization step: 4974. Total energy = 4902.5210 kcal/mol (4901.0234 without restraints) Performing minimization step: 4975. Total energy = 4902.1037 kcal/mol (4900.6063 without restraints) Performing minimization step: 4976. Total energy = 4901.6862 kcal/mol (4900.1892 without restraints) Performing minimization step: 4977. Total energy = 4901.2692 kcal/mol (4899.7724 without restraints) Performing minimization step: 4978. Total energy = 4900.8525 kcal/mol (4899.3561 without restraints) Performing minimization step: 4979. Total energy = 4900.4361 kcal/mol (4898.9400 without restraints) Performing minimization step: 4980. Total energy = 4900.0196 kcal/mol (4898.5239 without restraints) Performing minimization step: 4981. Total energy = 4899.6033 kcal/mol (4898.1079 without restraints) Performing minimization step: 4982. Total energy = 4899.1879 kcal/mol (4897.6928 without restraints) Performing minimization step: 4983. Total energy = 4898.7723 kcal/mol (4897.2775 without restraints) Performing minimization step: 4984. Total energy = 4898.3569 kcal/mol (4896.8625 without restraints) Performing minimization step: 4985. Total energy = 4897.9420 kcal/mol (4896.4480 without restraints) Performing minimization step: 4986. Total energy = 4897.5272 kcal/mol (4896.0335 without restraints) Performing minimization step: 4987. Total energy = 4897.1127 kcal/mol (4895.6193 without restraints) Performing minimization step: 4988. Total energy = 4896.6983 kcal/mol (4895.2052 without restraints) Performing minimization step: 4989. Total energy = 4896.2844 kcal/mol (4894.7916 without restraints) Performing minimization step: 4990. Total energy = 4895.8711 kcal/mol (4894.3786 without restraints) Performing minimization step: 4991. Total energy = 4895.4578 kcal/mol (4893.9656 without restraints) Performing minimization step: 4992. Total energy = 4895.0445 kcal/mol (4893.5527 without restraints) Performing minimization step: 4993. Total energy = 4894.6316 kcal/mol (4893.1402 without restraints) Performing minimization step: 4994. Total energy = 4894.2192 kcal/mol (4892.7280 without restraints) Performing minimization step: 4995. Total energy = 4893.8068 kcal/mol (4892.3160 without restraints) Performing minimization step: 4996. Total energy = 4893.3945 kcal/mol (4891.9040 without restraints) Performing minimization step: 4997. Total energy = 4892.9826 kcal/mol (4891.4924 without restraints) Performing minimization step: 4998. Total energy = 4892.5710 kcal/mol (4891.0812 without restraints) Performing minimization step: 4999. Total energy = 4892.1597 kcal/mol (4890.6702 without restraints) Performing minimization step: 5000. Total energy = 4891.7488 kcal/mol (4890.2596 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8248a952/tmp/C12MA1_refx/C12MA1_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to C12MA1_refx.pdb DONE!