============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140.pdb ============================================================================= Error: recognition of atom ATOM 24 'H5' DG A 1 ... failed. Atom erased. Error: recognition of atom ATOM 28 2H2' DG A 1 ... failed. Atom erased. Error: recognition of atom ATOM 33 1H2' DG A 1 ... failed. Atom erased. Error: recognition of atom ATOM 57 'H5' DG A 2 ... failed. Atom erased. Error: recognition of atom ATOM 61 2H2' DG A 2 ... failed. Atom erased. Error: recognition of atom ATOM 66 1H2' DG A 2 ... failed. Atom erased. Error: recognition of atom ATOM 90 'H5' DG A 3 ... failed. Atom erased. Error: recognition of atom ATOM 94 2H2' DG A 3 ... failed. Atom erased. Error: recognition of atom ATOM 99 1H2' DG A 3 ... failed. Atom erased. Error: recognition of atom ATOM 123 'H5' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 127 2H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 132 1H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 145 'H5' DT A 5 ... failed. Atom erased. Error: recognition of atom ATOM 149 2H2' DT A 5 ... failed. Atom erased. Error: recognition of atom ATOM 150 1H2' DT A 5 ... failed. Atom erased. Error: recognition of atom ATOM 188 'H5' DG A 6 ... failed. Atom erased. Error: recognition of atom ATOM 192 2H2' DG A 6 ... failed. Atom erased. Error: recognition of atom ATOM 197 1H2' DG A 6 ... failed. Atom erased. Error: recognition of atom ATOM 218 'H5' DC A 7 ... failed. Atom erased. Error: recognition of atom ATOM 222 2H2' DC A 7 ... failed. Atom erased. Error: recognition of atom ATOM 227 1H2' DC A 7 ... failed. Atom erased. Error: recognition of atom ATOM 251 'H5' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 255 2H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 260 1H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 284 'H5' DG A 9 ... failed. Atom erased. Error: recognition of atom ATOM 288 2H2' DG A 9 ... failed. Atom erased. Error: recognition of atom ATOM 293 1H2' DG A 9 ... failed. Atom erased. Error: recognition of atom ATOM 317 'H5' DG A 10 ... failed. Atom erased. Error: recognition of atom ATOM 321 2H2' DG A 10 ... failed. Atom erased. Error: recognition of atom ATOM 326 1H2' DG A 10 ... failed. Atom erased. Error: recognition of atom ATOM 350 'H5' DG A 11 ... failed. Atom erased. Error: recognition of atom ATOM 354 2H2' DG A 11 ... failed. Atom erased. Error: recognition of atom ATOM 359 1H2' DG A 11 ... failed. Atom erased. Error: recognition of atom ATOM 380 'H5' DC A 12 ... failed. Atom erased. Error: recognition of atom ATOM 384 2H2' DC A 12 ... failed. Atom erased. Error: recognition of atom ATOM 389 1H2' DC A 12 ... failed. Atom erased. Error: recognition of atom ATOM 412 'H5' DA A 13 ... failed. Atom erased. Error: recognition of atom ATOM 416 2H2' DA A 13 ... failed. Atom erased. Error: recognition of atom ATOM 421 1H2' DA A 13 ... failed. Atom erased. Error: recognition of atom ATOM 444 'H5' DA A 14 ... failed. Atom erased. Error: recognition of atom ATOM 448 2H2' DA A 14 ... failed. Atom erased. Error: recognition of atom ATOM 453 1H2' DA A 14 ... failed. Atom erased. Error: recognition of atom ATOM 476 'H5' DA A 15 ... failed. Atom erased. Error: recognition of atom ATOM 480 2H2' DA A 15 ... failed. Atom erased. Error: recognition of atom ATOM 485 1H2' DA A 15 ... failed. Atom erased. Error: recognition of atom ATOM 509 'H5' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 513 2H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 518 1H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 542 'H5' DG A 17 ... failed. Atom erased. Error: recognition of atom ATOM 546 2H2' DG A 17 ... failed. Atom erased. Error: recognition of atom ATOM 551 1H2' DG A 17 ... failed. Atom erased. Error: recognition of atom ATOM 575 'H5' DG A 18 ... failed. Atom erased. Error: recognition of atom ATOM 579 2H2' DG A 18 ... failed. Atom erased. Error: recognition of atom ATOM 584 1H2' DG A 18 ... failed. Atom erased. Error: recognition of atom ATOM 608 'H5' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 612 2H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 617 1H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 638 'H5' DC A 20 ... failed. Atom erased. Error: recognition of atom ATOM 642 2H2' DC A 20 ... failed. Atom erased. Error: recognition of atom ATOM 647 1H2' DC A 20 ... failed. Atom erased. Error: recognition of atom ATOM 670 'H5' DA A 21 ... failed. Atom erased. Error: recognition of atom ATOM 674 2H2' DA A 21 ... failed. Atom erased. Error: recognition of atom ATOM 679 1H2' DA A 21 ... failed. Atom erased. Error: recognition of atom ATOM 702 'H5' DA A 22 ... failed. Atom erased. Error: recognition of atom ATOM 706 2H2' DA A 22 ... failed. Atom erased. Error: recognition of atom ATOM 711 1H2' DA A 22 ... failed. Atom erased. Error: recognition of atom ATOM 735 'H5' DG A 23 ... failed. Atom erased. Error: recognition of atom ATOM 739 2H2' DG A 23 ... failed. Atom erased. Error: recognition of atom ATOM 744 1H2' DG A 23 ... failed. Atom erased. Error: recognition of atom ATOM 768 'H5' DG A 24 ... failed. Atom erased. Error: recognition of atom ATOM 772 2H2' DG A 24 ... failed. Atom erased. Error: recognition of atom ATOM 777 1H2' DG A 24 ... failed. Atom erased. Error: recognition of atom ATOM 801 'H5' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 805 2H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 810 1H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 834 'H5' DG A 26 ... failed. Atom erased. Error: recognition of atom ATOM 838 2H2' DG A 26 ... failed. Atom erased. Error: recognition of atom ATOM 843 1H2' DG A 26 ... failed. Atom erased. Error: recognition of atom ATOM 866 'H5' DA A 27 ... failed. Atom erased. Error: recognition of atom ATOM 870 2H2' DA A 27 ... failed. Atom erased. Error: recognition of atom ATOM 875 1H2' DA A 27 ... failed. Atom erased. Error: recognition of atom ATOM 898 'H5' DA A 28 ... failed. Atom erased. Error: recognition of atom ATOM 902 2H2' DA A 28 ... failed. Atom erased. Error: recognition of atom ATOM 907 1H2' DA A 28 ... failed. Atom erased. Error: recognition of atom ATOM 928 'H5' DC A 29 ... failed. Atom erased. Error: recognition of atom ATOM 932 2H2' DC A 29 ... failed. Atom erased. Error: recognition of atom ATOM 937 1H2' DC A 29 ... failed. Atom erased. Missing atom added: HETATM 25 H5'2 DG A 1 2.212 1.671 -0.971 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 1 6.635 0.301 0.406 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 1 6.023 -1.456 -0.325 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 2 7.660 -0.026 -4.007 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 2 10.410 -3.767 -3.399 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 2 8.817 -4.836 -3.964 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 3 7.409 -5.107 -8.437 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 3 6.668 -9.114 -8.011 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 3 4.982 -8.086 -8.326 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 4 4.971 -9.005 -12.471 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 4 0.506 -9.969 -11.058 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 4 0.168 -8.007 -11.237 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 5 -1.296 -8.529 -14.693 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 5 -2.926 -4.664 -12.580 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 5 -4.175 -4.670 -13.819 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 6 -5.617 -4.402 -17.324 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 6 -7.057 -0.268 -15.911 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 6 -5.202 0.364 -16.307 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 7 -6.466 1.729 -19.962 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 7 -5.520 5.674 -17.960 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 7 -3.634 5.231 -18.452 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 8 -5.865 6.711 -22.670 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 8 -3.113 10.612 -21.332 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 8 -1.471 9.527 -21.681 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 9 -0.795 11.157 -25.296 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 9 2.955 12.290 -22.879 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 9 3.602 10.501 -23.494 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 10 4.571 12.903 -27.462 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 10 8.881 11.355 -25.715 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 10 8.377 9.556 -26.428 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 11 10.481 10.727 -29.564 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 11 12.228 6.373 -28.302 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 11 10.648 5.568 -29.226 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 12 13.146 4.770 -32.472 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 12 12.379 0.476 -31.395 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 12 10.606 0.809 -32.257 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 13 9.518 0.351 -35.236 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 13 10.779 -4.497 -36.112 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 13 11.013 -4.471 -34.126 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 14 6.376 -4.798 -32.700 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 14 9.292 -7.546 -29.819 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 14 9.523 -5.853 -28.781 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 15 7.102 -7.064 -25.999 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 15 10.853 -6.479 -23.545 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 15 10.286 -4.562 -23.533 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 16 8.795 -5.343 -20.010 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 16 12.657 -2.891 -19.239 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 16 11.393 -1.343 -19.259 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 17 11.450 -1.400 -15.430 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 17 13.246 2.729 -16.537 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 17 11.327 3.274 -16.401 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 18 11.946 4.355 -12.596 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 18 10.023 8.197 -14.483 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 18 8.274 7.256 -14.250 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 19 7.502 9.233 -10.813 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 19 3.718 10.557 -12.631 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 19 3.093 8.725 -12.129 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 20 1.188 8.337 -8.954 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 20 -2.349 9.006 -10.889 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 20 -2.175 7.084 -10.366 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 21 -4.750 8.412 -6.872 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 21 -7.218 4.584 -8.838 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 21 -5.887 3.380 -7.959 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 22 -8.713 3.436 -4.339 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 22 -9.178 -1.037 -5.763 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 22 -7.376 -1.307 -4.939 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 23 -8.740 -1.802 -0.178 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 23 -7.592 -6.171 -2.144 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 23 -5.773 -5.562 -1.582 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 24 -4.100 -3.836 2.128 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 24 -0.865 -6.938 1.392 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 24 -1.772 -8.339 2.492 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 25 -4.512 -9.152 -2.544 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 25 -6.243 -11.613 -4.213 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 25 -5.014 -11.343 -5.767 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 26 0.462 -12.831 -4.712 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 26 3.686 -12.664 -1.508 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 26 2.523 -14.010 -0.595 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 27 1.808 -18.313 -1.946 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 27 5.965 -19.531 0.291 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 27 5.961 -17.633 0.918 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 28 4.439 -18.071 4.586 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 28 8.036 -15.589 5.690 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 28 6.821 -14.094 5.154 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 29 6.186 -13.184 8.652 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 29 6.591 -9.108 8.633 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 29 4.816 -9.091 7.714 1.00 0.00 H Missing atom added: HETATM 2 OP3 DG A 1 -0.667 0.744 -0.906 1.00 0.00 O Number of atoms: 938 Number of residues: 29 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 1019 Number of angles built: 1840 Number of dihedrals built: 2756 Number of impropers built: 215 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 436594 Number of van der Waals pairs: 107820 Number of H-bonds built: 18 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 4 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 4598.8294 kcal/mol (4593.9697 without restraints) Performing minimization step: 2. Total energy = 4564.5608 kcal/mol (4559.8509 without restraints) Performing minimization step: 3. Total energy = 4531.5265 kcal/mol (4526.9583 without restraints) Performing minimization step: 4. Total energy = 4499.6586 kcal/mol (4495.2242 without restraints) Performing minimization step: 5. Total energy = 4468.8929 kcal/mol (4464.5849 without restraints) Performing minimization step: 6. Total energy = 4439.1688 kcal/mol (4434.9804 without restraints) Performing minimization step: 7. Total energy = 4410.4303 kcal/mol (4406.3550 without restraints) Performing minimization step: 8. Total energy = 4382.6239 kcal/mol (4378.6556 without restraints) Performing minimization step: 9. Total energy = 4355.6995 kcal/mol (4351.8325 without restraints) Performing minimization step: 10. Total energy = 4329.6103 kcal/mol (4325.8392 without restraints) Performing minimization step: 11. Total energy = 4304.3123 kcal/mol (4300.6322 without restraints) Performing minimization step: 12. Total energy = 4279.7639 kcal/mol (4276.1699 without restraints) Performing minimization step: 13. Total energy = 4255.9262 kcal/mol (4252.4139 without restraints) Performing minimization step: 14. Total energy = 4232.7628 kcal/mol (4229.3279 without restraints) Performing minimization step: 15. Total energy = 4210.2393 kcal/mol (4206.8781 without restraints) Performing minimization step: 16. Total energy = 4188.3236 kcal/mol (4185.0323 without restraints) Performing minimization step: 17. Total energy = 4166.9855 kcal/mol (4163.7607 without restraints) Performing minimization step: 18. Total energy = 4146.1965 kcal/mol (4143.0349 without restraints) Performing minimization step: 19. Total energy = 4125.9301 kcal/mol (4122.8287 without restraints) Performing minimization step: 20. Total energy = 4106.1609 kcal/mol (4103.1168 without restraints) Performing minimization step: 21. Total energy = 4086.8655 kcal/mol (4083.8760 without restraints) Performing minimization step: 22. Total energy = 4068.0217 kcal/mol (4065.0842 without restraints) Performing minimization step: 23. Total energy = 4049.6087 kcal/mol (4046.7208 without restraints) Performing minimization step: 24. Total energy = 4031.6067 kcal/mol (4028.7663 without restraints) Performing minimization step: 25. Total energy = 4013.9974 kcal/mol (4011.2023 without restraints) Performing minimization step: 26. Total energy = 3996.7632 kcal/mol (3994.0114 without restraints) Performing minimization step: 27. Total energy = 3979.8878 kcal/mol (3977.1774 without restraints) Performing minimization step: 28. Total energy = 3963.3554 kcal/mol (3960.6847 without restraints) Performing minimization step: 29. Total energy = 3947.1520 kcal/mol (3944.5192 without restraints) Performing minimization step: 30. Total energy = 3931.2633 kcal/mol (3928.6670 without restraints) Performing minimization step: 31. Total energy = 3915.6765 kcal/mol (3913.1151 without restraints) Performing minimization step: 32. Total energy = 3900.3791 kcal/mol (3897.8512 without restraints) Performing minimization step: 33. Total energy = 3885.3596 kcal/mol (3882.8638 without restraints) Performing minimization step: 34. Total energy = 3870.6068 kcal/mol (3868.1419 without restraints) Performing minimization step: 35. Total energy = 3856.1104 kcal/mol (3853.6751 without restraints) Performing minimization step: 36. Total energy = 3841.8603 kcal/mol (3839.4536 without restraints) Performing minimization step: 37. Total energy = 3827.8472 kcal/mol (3825.4679 without restraints) Performing minimization step: 38. Total energy = 3814.0621 kcal/mol (3811.7093 without restraints) Performing minimization step: 39. Total energy = 3800.4967 kcal/mol (3798.1693 without restraints) Performing minimization step: 40. Total energy = 3787.1428 kcal/mol (3784.8399 without restraints) Performing minimization step: 41. Total energy = 3773.9928 kcal/mol (3771.7136 without restraints) Performing minimization step: 42. Total energy = 3761.0393 kcal/mol (3758.7829 without restraints) Performing minimization step: 43. Total energy = 3748.2755 kcal/mol (3746.0411 without restraints) Performing minimization step: 44. Total energy = 3735.6949 kcal/mol (3733.4818 without restraints) Performing minimization step: 45. Total energy = 3723.2907 kcal/mol (3721.0980 without restraints) Performing minimization step: 46. Total energy = 3711.0573 kcal/mol (3708.8846 without restraints) Performing minimization step: 47. Total energy = 3698.9889 kcal/mol (3696.8353 without restraints) Performing minimization step: 48. Total energy = 3687.0800 kcal/mol (3684.9449 without restraints) Performing minimization step: 49. Total energy = 3675.3251 kcal/mol (3673.2080 without restraints) Performing minimization step: 50. Total energy = 3663.7197 kcal/mol (3661.6199 without restraints) Performing minimization step: 51. Total energy = 3652.2588 kcal/mol (3650.1758 without restraints) Performing minimization step: 52. Total energy = 3640.9378 kcal/mol (3638.8710 without restraints) Performing minimization step: 53. Total energy = 3629.7522 kcal/mol (3627.7012 without restraints) Performing minimization step: 54. Total energy = 3618.6979 kcal/mol (3616.6622 without restraints) Performing minimization step: 55. Total energy = 3607.7709 kcal/mol (3605.7501 without restraints) Performing minimization step: 56. Total energy = 3596.9674 kcal/mol (3594.9609 without restraints) Performing minimization step: 57. Total energy = 3586.2835 kcal/mol (3584.2910 without restraints) Performing minimization step: 58. Total energy = 3575.7159 kcal/mol (3573.7369 without restraints) Performing minimization step: 59. Total energy = 3565.2610 kcal/mol (3563.2951 without restraints) Performing minimization step: 60. Total energy = 3554.9156 kcal/mol (3552.9625 without restraints) Performing minimization step: 61. Total energy = 3544.6763 kcal/mol (3542.7354 without restraints) Performing minimization step: 62. Total energy = 3534.5406 kcal/mol (3532.6120 without restraints) Performing minimization step: 63. Total energy = 3524.5054 kcal/mol (3522.5885 without restraints) Performing minimization step: 64. Total energy = 3514.5679 kcal/mol (3512.6625 without restraints) Performing minimization step: 65. Total energy = 3504.7254 kcal/mol (3502.8310 without restraints) Performing minimization step: 66. Total energy = 3494.9752 kcal/mol (3493.0916 without restraints) Performing minimization step: 67. Total energy = 3485.3149 kcal/mol (3483.4417 without restraints) Performing minimization step: 68. Total energy = 3475.7421 kcal/mol (3473.8791 without restraints) Performing minimization step: 69. Total energy = 3466.2545 kcal/mol (3464.4016 without restraints) Performing minimization step: 70. Total energy = 3456.8500 kcal/mol (3455.0068 without restraints) Performing minimization step: 71. Total energy = 3447.5264 kcal/mol (3445.6926 without restraints) Performing minimization step: 72. Total energy = 3438.2814 kcal/mol (3436.4567 without restraints) Performing minimization step: 73. Total energy = 3429.1133 kcal/mol (3427.2977 without restraints) Performing minimization step: 74. Total energy = 3420.0203 kcal/mol (3418.2135 without restraints) Performing minimization step: 75. Total energy = 3411.0003 kcal/mol (3409.2021 without restraints) Performing minimization step: 76. Total energy = 3402.0515 kcal/mol (3400.2616 without restraints) Performing minimization step: 77. Total energy = 3393.1725 kcal/mol (3391.3908 without restraints) Performing minimization step: 78. Total energy = 3384.3610 kcal/mol (3382.5872 without restraints) Performing minimization step: 79. Total energy = 3375.6163 kcal/mol (3373.8503 without restraints) Performing minimization step: 80. Total energy = 3366.9364 kcal/mol (3365.1780 without restraints) Performing minimization step: 81. Total energy = 3358.3199 kcal/mol (3356.5689 without restraints) Performing minimization step: 82. Total energy = 3349.7653 kcal/mol (3348.0215 without restraints) Performing minimization step: 83. Total energy = 3341.2712 kcal/mol (3339.5345 without restraints) Performing minimization step: 84. Total energy = 3332.8360 kcal/mol (3331.1063 without restraints) Performing minimization step: 85. Total energy = 3324.4590 kcal/mol (3322.7361 without restraints) Performing minimization step: 86. Total energy = 3316.1386 kcal/mol (3314.4224 without restraints) Performing minimization step: 87. Total energy = 3307.8737 kcal/mol (3306.1639 without restraints) Performing minimization step: 88. Total energy = 3299.6630 kcal/mol (3297.9596 without restraints) Performing minimization step: 89. Total energy = 3291.5054 kcal/mol (3289.8083 without restraints) Performing minimization step: 90. Total energy = 3283.3999 kcal/mol (3281.7089 without restraints) Performing minimization step: 91. Total energy = 3275.3454 kcal/mol (3273.6604 without restraints) Performing minimization step: 92. Total energy = 3267.3409 kcal/mol (3265.6617 without restraints) Performing minimization step: 93. Total energy = 3259.3854 kcal/mol (3257.7120 without restraints) Performing minimization step: 94. Total energy = 3251.4779 kcal/mol (3249.8102 without restraints) Performing minimization step: 95. Total energy = 3243.6175 kcal/mol (3241.9553 without restraints) Performing minimization step: 96. Total energy = 3235.8033 kcal/mol (3234.1466 without restraints) Performing minimization step: 97. Total energy = 3228.0345 kcal/mol (3226.3831 without restraints) Performing minimization step: 98. Total energy = 3220.3102 kcal/mol (3218.6640 without restraints) Performing minimization step: 99. Total energy = 3212.6295 kcal/mol (3210.9885 without restraints) Performing minimization step: 100. Total energy = 3204.9918 kcal/mol (3203.3559 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 101. Total energy = 3197.3963 kcal/mol (3195.7653 without restraints) Performing minimization step: 102. Total energy = 3189.8420 kcal/mol (3188.2159 without restraints) Performing minimization step: 103. Total energy = 3182.3285 kcal/mol (3180.7073 without restraints) Performing minimization step: 104. Total energy = 3174.8551 kcal/mol (3173.2386 without restraints) Performing minimization step: 105. Total energy = 3167.4208 kcal/mol (3165.8089 without restraints) Performing minimization step: 106. Total energy = 3160.0254 kcal/mol (3158.4181 without restraints) Performing minimization step: 107. Total energy = 3152.6683 kcal/mol (3151.0654 without restraints) Performing minimization step: 108. Total energy = 3145.3486 kcal/mol (3143.7502 without restraints) Performing minimization step: 109. Total energy = 3138.0657 kcal/mol (3136.4717 without restraints) Performing minimization step: 110. Total energy = 3130.8190 kcal/mol (3129.2293 without restraints) Performing minimization step: 111. Total energy = 3123.6080 kcal/mol (3122.0225 without restraints) Performing minimization step: 112. Total energy = 3116.4322 kcal/mol (3114.8510 without restraints) Performing minimization step: 113. Total energy = 3109.2914 kcal/mol (3107.7142 without restraints) Performing minimization step: 114. Total energy = 3102.1844 kcal/mol (3100.6112 without restraints) Performing minimization step: 115. Total energy = 3095.1110 kcal/mol (3093.5418 without restraints) Performing minimization step: 116. Total energy = 3088.0709 kcal/mol (3086.5056 without restraints) Performing minimization step: 117. Total energy = 3081.0634 kcal/mol (3079.5019 without restraints) Performing minimization step: 118. Total energy = 3074.0883 kcal/mol (3072.5307 without restraints) Performing minimization step: 119. Total energy = 3067.1449 kcal/mol (3065.5911 without restraints) Performing minimization step: 120. Total energy = 3060.2329 kcal/mol (3058.6828 without restraints) Performing minimization step: 121. Total energy = 3053.3518 kcal/mol (3051.8054 without restraints) Performing minimization step: 122. Total energy = 3046.5013 kcal/mol (3044.9586 without restraints) Performing minimization step: 123. Total energy = 3039.6809 kcal/mol (3038.1416 without restraints) Performing minimization step: 124. Total energy = 3032.8898 kcal/mol (3031.3540 without restraints) Performing minimization step: 125. Total energy = 3026.1284 kcal/mol (3024.5962 without restraints) Performing minimization step: 126. Total energy = 3019.3963 kcal/mol (3017.8676 without restraints) Performing minimization step: 127. Total energy = 3012.6931 kcal/mol (3011.1678 without restraints) Performing minimization step: 128. Total energy = 3006.0176 kcal/mol (3004.4956 without restraints) Performing minimization step: 129. Total energy = 2999.3709 kcal/mol (2997.8523 without restraints) Performing minimization step: 130. Total energy = 2992.7514 kcal/mol (2991.2360 without restraints) Performing minimization step: 131. Total energy = 2986.1595 kcal/mol (2984.6475 without restraints) Performing minimization step: 132. Total energy = 2979.5951 kcal/mol (2978.0863 without restraints) Performing minimization step: 133. Total energy = 2973.0573 kcal/mol (2971.5517 without restraints) Performing minimization step: 134. Total energy = 2966.5460 kcal/mol (2965.0435 without restraints) Performing minimization step: 135. Total energy = 2960.0609 kcal/mol (2958.5616 without restraints) Performing minimization step: 136. Total energy = 2953.6019 kcal/mol (2952.1057 without restraints) Performing minimization step: 137. Total energy = 2947.1687 kcal/mol (2945.6756 without restraints) Performing minimization step: 138. Total energy = 2940.7608 kcal/mol (2939.2707 without restraints) Performing minimization step: 139. Total energy = 2934.3776 kcal/mol (2932.8905 without restraints) Performing minimization step: 140. Total energy = 2928.0198 kcal/mol (2926.5357 without restraints) Performing minimization step: 141. Total energy = 2921.6867 kcal/mol (2920.2057 without restraints) Performing minimization step: 142. Total energy = 2915.3782 kcal/mol (2913.9000 without restraints) Performing minimization step: 143. Total energy = 2909.0938 kcal/mol (2907.6185 without restraints) Performing minimization step: 144. Total energy = 2902.8334 kcal/mol (2901.3610 without restraints) Performing minimization step: 145. Total energy = 2896.5968 kcal/mol (2895.1272 without restraints) Performing minimization step: 146. Total energy = 2890.3838 kcal/mol (2888.9170 without restraints) Performing minimization step: 147. Total energy = 2884.1942 kcal/mol (2882.7302 without restraints) Performing minimization step: 148. Total energy = 2878.0278 kcal/mol (2876.5665 without restraints) Performing minimization step: 149. Total energy = 2871.8844 kcal/mol (2870.4259 without restraints) Performing minimization step: 150. Total energy = 2865.7637 kcal/mol (2864.3080 without restraints) Performing minimization step: 151. Total energy = 2859.6659 kcal/mol (2858.2129 without restraints) Performing minimization step: 152. Total energy = 2853.5903 kcal/mol (2852.1400 without restraints) Performing minimization step: 153. Total energy = 2847.5370 kcal/mol (2846.0893 without restraints) Performing minimization step: 154. Total energy = 2841.5057 kcal/mol (2840.0607 without restraints) Performing minimization step: 155. Total energy = 2835.4964 kcal/mol (2834.0539 without restraints) Performing minimization step: 156. Total energy = 2829.5089 kcal/mol (2828.0691 without restraints) Performing minimization step: 157. Total energy = 2823.5429 kcal/mol (2822.1056 without restraints) Performing minimization step: 158. Total energy = 2817.5983 kcal/mol (2816.1636 without restraints) Performing minimization step: 159. Total energy = 2811.6747 kcal/mol (2810.2426 without restraints) Performing minimization step: 160. Total energy = 2805.7725 kcal/mol (2804.3430 without restraints) Performing minimization step: 161. Total energy = 2799.8910 kcal/mol (2798.4640 without restraints) Performing minimization step: 162. Total energy = 2794.0306 kcal/mol (2792.6060 without restraints) Performing minimization step: 163. Total energy = 2788.1906 kcal/mol (2786.7686 without restraints) Performing minimization step: 164. Total energy = 2782.3712 kcal/mol (2780.9516 without restraints) Performing minimization step: 165. Total energy = 2776.5724 kcal/mol (2775.1553 without restraints) Performing minimization step: 166. Total energy = 2770.7940 kcal/mol (2769.3794 without restraints) Performing minimization step: 167. Total energy = 2765.0357 kcal/mol (2763.6234 without restraints) Performing minimization step: 168. Total energy = 2759.2973 kcal/mol (2757.8875 without restraints) Performing minimization step: 169. Total energy = 2753.5787 kcal/mol (2752.1713 without restraints) Performing minimization step: 170. Total energy = 2747.8800 kcal/mol (2746.4750 without restraints) Performing minimization step: 171. Total energy = 2742.2010 kcal/mol (2740.7983 without restraints) Performing minimization step: 172. Total energy = 2736.5416 kcal/mol (2735.1412 without restraints) Performing minimization step: 173. Total energy = 2730.9017 kcal/mol (2729.5037 without restraints) Performing minimization step: 174. Total energy = 2725.2817 kcal/mol (2723.8860 without restraints) Performing minimization step: 175. Total energy = 2719.6802 kcal/mol (2718.2868 without restraints) Performing minimization step: 176. Total energy = 2714.0978 kcal/mol (2712.7067 without restraints) Performing minimization step: 177. Total energy = 2708.5342 kcal/mol (2707.1455 without restraints) Performing minimization step: 178. Total energy = 2702.9897 kcal/mol (2701.6032 without restraints) Performing minimization step: 179. Total energy = 2697.4640 kcal/mol (2696.0798 without restraints) Performing minimization step: 180. Total energy = 2691.9570 kcal/mol (2690.5750 without restraints) Performing minimization step: 181. Total energy = 2686.4686 kcal/mol (2685.0889 without restraints) Performing minimization step: 182. Total energy = 2680.9987 kcal/mol (2679.6213 without restraints) Performing minimization step: 183. Total energy = 2675.5472 kcal/mol (2674.1718 without restraints) Performing minimization step: 184. Total energy = 2670.1139 kcal/mol (2668.7409 without restraints) Performing minimization step: 185. Total energy = 2664.6992 kcal/mol (2663.3284 without restraints) Performing minimization step: 186. Total energy = 2659.3025 kcal/mol (2657.9338 without restraints) Performing minimization step: 187. Total energy = 2653.9236 kcal/mol (2652.5571 without restraints) Performing minimization step: 188. Total energy = 2648.5629 kcal/mol (2647.1986 without restraints) Performing minimization step: 189. Total energy = 2643.2198 kcal/mol (2641.8577 without restraints) Performing minimization step: 190. Total energy = 2637.8949 kcal/mol (2636.5350 without restraints) Performing minimization step: 191. Total energy = 2632.5877 kcal/mol (2631.2299 without restraints) Performing minimization step: 192. Total energy = 2627.2980 kcal/mol (2625.9424 without restraints) Performing minimization step: 193. Total energy = 2622.0260 kcal/mol (2620.6724 without restraints) Performing minimization step: 194. Total energy = 2616.7714 kcal/mol (2615.4200 without restraints) Performing minimization step: 195. Total energy = 2611.5342 kcal/mol (2610.1849 without restraints) Performing minimization step: 196. Total energy = 2606.3144 kcal/mol (2604.9671 without restraints) Performing minimization step: 197. Total energy = 2601.1118 kcal/mol (2599.7667 without restraints) Performing minimization step: 198. Total energy = 2595.9265 kcal/mol (2594.5834 without restraints) Performing minimization step: 199. Total energy = 2590.7585 kcal/mol (2589.4176 without restraints) Performing minimization step: 200. Total energy = 2585.6075 kcal/mol (2584.2687 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 201. Total energy = 2580.4737 kcal/mol (2579.1369 without restraints) Performing minimization step: 202. Total energy = 2575.3564 kcal/mol (2574.0217 without restraints) Performing minimization step: 203. Total energy = 2570.2561 kcal/mol (2568.9234 without restraints) Performing minimization step: 204. Total energy = 2565.1727 kcal/mol (2563.8421 without restraints) Performing minimization step: 205. Total energy = 2560.1062 kcal/mol (2558.7778 without restraints) Performing minimization step: 206. Total energy = 2555.0563 kcal/mol (2553.7297 without restraints) Performing minimization step: 207. Total energy = 2550.0228 kcal/mol (2548.6982 without restraints) Performing minimization step: 208. Total energy = 2545.0061 kcal/mol (2543.6835 without restraints) Performing minimization step: 209. Total energy = 2540.0057 kcal/mol (2538.6851 without restraints) Performing minimization step: 210. Total energy = 2535.0217 kcal/mol (2533.7031 without restraints) Performing minimization step: 211. Total energy = 2530.0540 kcal/mol (2528.7374 without restraints) Performing minimization step: 212. Total energy = 2525.1027 kcal/mol (2523.7881 without restraints) Performing minimization step: 213. Total energy = 2520.1677 kcal/mol (2518.8550 without restraints) Performing minimization step: 214. Total energy = 2515.2489 kcal/mol (2513.9382 without restraints) Performing minimization step: 215. Total energy = 2510.3461 kcal/mol (2509.0374 without restraints) Performing minimization step: 216. Total energy = 2505.4595 kcal/mol (2504.1528 without restraints) Performing minimization step: 217. Total energy = 2500.5889 kcal/mol (2499.2840 without restraints) Performing minimization step: 218. Total energy = 2495.7342 kcal/mol (2494.4314 without restraints) Performing minimization step: 219. Total energy = 2490.8954 kcal/mol (2489.5945 without restraints) Performing minimization step: 220. Total energy = 2486.0727 kcal/mol (2484.7737 without restraints) Performing minimization step: 221. Total energy = 2481.2658 kcal/mol (2479.9688 without restraints) Performing minimization step: 222. Total energy = 2476.4747 kcal/mol (2475.1796 without restraints) Performing minimization step: 223. Total energy = 2471.6993 kcal/mol (2470.4062 without restraints) Performing minimization step: 224. Total energy = 2466.9397 kcal/mol (2465.6484 without restraints) Performing minimization step: 225. Total energy = 2462.1955 kcal/mol (2460.9060 without restraints) Performing minimization step: 226. Total energy = 2457.4669 kcal/mol (2456.1794 without restraints) Performing minimization step: 227. Total energy = 2452.7540 kcal/mol (2451.4685 without restraints) Performing minimization step: 228. Total energy = 2448.0567 kcal/mol (2446.7730 without restraints) Performing minimization step: 229. Total energy = 2443.3748 kcal/mol (2442.0929 without restraints) Performing minimization step: 230. Total energy = 2438.7080 kcal/mol (2437.4280 without restraints) Performing minimization step: 231. Total energy = 2434.0567 kcal/mol (2432.7787 without restraints) Performing minimization step: 232. Total energy = 2429.4205 kcal/mol (2428.1444 without restraints) Performing minimization step: 233. Total energy = 2424.7999 kcal/mol (2423.5256 without restraints) Performing minimization step: 234. Total energy = 2420.1945 kcal/mol (2418.9221 without restraints) Performing minimization step: 235. Total energy = 2415.6043 kcal/mol (2414.3337 without restraints) Performing minimization step: 236. Total energy = 2411.0289 kcal/mol (2409.7602 without restraints) Performing minimization step: 237. Total energy = 2406.4687 kcal/mol (2405.2019 without restraints) Performing minimization step: 238. Total energy = 2401.9236 kcal/mol (2400.6586 without restraints) Performing minimization step: 239. Total energy = 2397.3937 kcal/mol (2396.1305 without restraints) Performing minimization step: 240. Total energy = 2392.8786 kcal/mol (2391.6172 without restraints) Performing minimization step: 241. Total energy = 2388.3785 kcal/mol (2387.1190 without restraints) Performing minimization step: 242. Total energy = 2383.8934 kcal/mol (2382.6358 without restraints) Performing minimization step: 243. Total energy = 2379.4232 kcal/mol (2378.1673 without restraints) Performing minimization step: 244. Total energy = 2374.9679 kcal/mol (2373.7138 without restraints) Performing minimization step: 245. Total energy = 2370.5272 kcal/mol (2369.2749 without restraints) Performing minimization step: 246. Total energy = 2366.1012 kcal/mol (2364.8508 without restraints) Performing minimization step: 247. Total energy = 2361.6899 kcal/mol (2360.4413 without restraints) Performing minimization step: 248. Total energy = 2357.2932 kcal/mol (2356.0462 without restraints) Performing minimization step: 249. Total energy = 2352.9106 kcal/mol (2351.6655 without restraints) Performing minimization step: 250. Total energy = 2348.5431 kcal/mol (2347.2999 without restraints) Performing minimization step: 251. Total energy = 2344.1901 kcal/mol (2342.9485 without restraints) Performing minimization step: 252. Total energy = 2339.8515 kcal/mol (2338.6119 without restraints) Performing minimization step: 253. Total energy = 2335.5276 kcal/mol (2334.2897 without restraints) Performing minimization step: 254. Total energy = 2331.2180 kcal/mol (2329.9819 without restraints) Performing minimization step: 255. Total energy = 2326.9229 kcal/mol (2325.6886 without restraints) Performing minimization step: 256. Total energy = 2322.6423 kcal/mol (2321.4098 without restraints) Performing minimization step: 257. Total energy = 2318.3757 kcal/mol (2317.1449 without restraints) Performing minimization step: 258. Total energy = 2314.1235 kcal/mol (2312.8944 without restraints) Performing minimization step: 259. Total energy = 2309.8855 kcal/mol (2308.6582 without restraints) Performing minimization step: 260. Total energy = 2305.6618 kcal/mol (2304.4362 without restraints) Performing minimization step: 261. Total energy = 2301.4522 kcal/mol (2300.2283 without restraints) Performing minimization step: 262. Total energy = 2297.2567 kcal/mol (2296.0346 without restraints) Performing minimization step: 263. Total energy = 2293.0753 kcal/mol (2291.8550 without restraints) Performing minimization step: 264. Total energy = 2288.9080 kcal/mol (2287.6894 without restraints) Performing minimization step: 265. Total energy = 2284.7548 kcal/mol (2283.5378 without restraints) Performing minimization step: 266. Total energy = 2280.6155 kcal/mol (2279.4003 without restraints) Performing minimization step: 267. Total energy = 2276.4902 kcal/mol (2275.2767 without restraints) Performing minimization step: 268. Total energy = 2272.3781 kcal/mol (2271.1664 without restraints) Performing minimization step: 269. Total energy = 2268.2806 kcal/mol (2267.0706 without restraints) Performing minimization step: 270. Total energy = 2264.1970 kcal/mol (2262.9887 without restraints) Performing minimization step: 271. Total energy = 2260.1272 kcal/mol (2258.9206 without restraints) Performing minimization step: 272. Total energy = 2256.0711 kcal/mol (2254.8662 without restraints) Performing minimization step: 273. Total energy = 2252.0289 kcal/mol (2250.8256 without restraints) Performing minimization step: 274. Total energy = 2248.0003 kcal/mol (2246.7988 without restraints) Performing minimization step: 275. Total energy = 2243.9852 kcal/mol (2242.7854 without restraints) Performing minimization step: 276. Total energy = 2239.9841 kcal/mol (2238.7859 without restraints) Performing minimization step: 277. Total energy = 2235.9965 kcal/mol (2234.8000 without restraints) Performing minimization step: 278. Total energy = 2232.0225 kcal/mol (2230.8277 without restraints) Performing minimization step: 279. Total energy = 2228.0620 kcal/mol (2226.8689 without restraints) Performing minimization step: 280. Total energy = 2224.1150 kcal/mol (2222.9236 without restraints) Performing minimization step: 281. Total energy = 2220.1818 kcal/mol (2218.9920 without restraints) Performing minimization step: 282. Total energy = 2216.2618 kcal/mol (2215.0737 without restraints) Performing minimization step: 283. Total energy = 2212.3552 kcal/mol (2211.1688 without restraints) Performing minimization step: 284. Total energy = 2208.4620 kcal/mol (2207.2772 without restraints) Performing minimization step: 285. Total energy = 2204.5821 kcal/mol (2203.3988 without restraints) Performing minimization step: 286. Total energy = 2200.7155 kcal/mol (2199.5340 without restraints) Performing minimization step: 287. Total energy = 2196.8625 kcal/mol (2195.6826 without restraints) Performing minimization step: 288. Total energy = 2193.0226 kcal/mol (2191.8444 without restraints) Performing minimization step: 289. Total energy = 2189.1958 kcal/mol (2188.0193 without restraints) Performing minimization step: 290. Total energy = 2185.3823 kcal/mol (2184.2074 without restraints) Performing minimization step: 291. Total energy = 2181.5820 kcal/mol (2180.4087 without restraints) Performing minimization step: 292. Total energy = 2177.7948 kcal/mol (2176.6231 without restraints) Performing minimization step: 293. Total energy = 2174.0207 kcal/mol (2172.8507 without restraints) Performing minimization step: 294. Total energy = 2170.2597 kcal/mol (2169.0913 without restraints) Performing minimization step: 295. Total energy = 2166.5115 kcal/mol (2165.3447 without restraints) Performing minimization step: 296. Total energy = 2162.7763 kcal/mol (2161.6111 without restraints) Performing minimization step: 297. Total energy = 2159.0542 kcal/mol (2157.8907 without restraints) Performing minimization step: 298. Total energy = 2155.3454 kcal/mol (2154.1834 without restraints) Performing minimization step: 299. Total energy = 2151.6494 kcal/mol (2150.4890 without restraints) Performing minimization step: 300. Total energy = 2147.9663 kcal/mol (2146.8075 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 301. Total energy = 2144.2956 kcal/mol (2143.1385 without restraints) Performing minimization step: 302. Total energy = 2140.6380 kcal/mol (2139.4825 without restraints) Performing minimization step: 303. Total energy = 2136.9932 kcal/mol (2135.8392 without restraints) Performing minimization step: 304. Total energy = 2133.3611 kcal/mol (2132.2087 without restraints) Performing minimization step: 305. Total energy = 2129.7417 kcal/mol (2128.5909 without restraints) Performing minimization step: 306. Total energy = 2126.1349 kcal/mol (2124.9858 without restraints) Performing minimization step: 307. Total energy = 2122.5410 kcal/mol (2121.3934 without restraints) Performing minimization step: 308. Total energy = 2118.9596 kcal/mol (2117.8135 without restraints) Performing minimization step: 309. Total energy = 2115.3909 kcal/mol (2114.2465 without restraints) Performing minimization step: 310. Total energy = 2111.8347 kcal/mol (2110.6917 without restraints) Performing minimization step: 311. Total energy = 2108.2909 kcal/mol (2107.1496 without restraints) Performing minimization step: 312. Total energy = 2104.7596 kcal/mol (2103.6197 without restraints) Performing minimization step: 313. Total energy = 2101.2407 kcal/mol (2100.1025 without restraints) Performing minimization step: 314. Total energy = 2097.7344 kcal/mol (2096.5977 without restraints) Performing minimization step: 315. Total energy = 2094.2404 kcal/mol (2093.1053 without restraints) Performing minimization step: 316. Total energy = 2090.7589 kcal/mol (2089.6253 without restraints) Performing minimization step: 317. Total energy = 2087.2897 kcal/mol (2086.1576 without restraints) Performing minimization step: 318. Total energy = 2083.8327 kcal/mol (2082.7022 without restraints) Performing minimization step: 319. Total energy = 2080.3879 kcal/mol (2079.2589 without restraints) Performing minimization step: 320. Total energy = 2076.9555 kcal/mol (2075.8280 without restraints) Performing minimization step: 321. Total energy = 2073.5353 kcal/mol (2072.4094 without restraints) Performing minimization step: 322. Total energy = 2070.1273 kcal/mol (2069.0029 without restraints) Performing minimization step: 323. Total energy = 2066.7313 kcal/mol (2065.6083 without restraints) Performing minimization step: 324. Total energy = 2063.3475 kcal/mol (2062.2261 without restraints) Performing minimization step: 325. Total energy = 2059.9758 kcal/mol (2058.8560 without restraints) Performing minimization step: 326. Total energy = 2056.6162 kcal/mol (2055.4979 without restraints) Performing minimization step: 327. Total energy = 2053.2687 kcal/mol (2052.1519 without restraints) Performing minimization step: 328. Total energy = 2049.9329 kcal/mol (2048.8176 without restraints) Performing minimization step: 329. Total energy = 2046.6092 kcal/mol (2045.4954 without restraints) Performing minimization step: 330. Total energy = 2043.2973 kcal/mol (2042.1850 without restraints) Performing minimization step: 331. Total energy = 2039.9976 kcal/mol (2038.8868 without restraints) Performing minimization step: 332. Total energy = 2036.7097 kcal/mol (2035.6004 without restraints) Performing minimization step: 333. Total energy = 2033.4336 kcal/mol (2032.3257 without restraints) Performing minimization step: 334. Total energy = 2030.1689 kcal/mol (2029.0624 without restraints) Performing minimization step: 335. Total energy = 2026.9163 kcal/mol (2025.8115 without restraints) Performing minimization step: 336. Total energy = 2023.6755 kcal/mol (2022.5721 without restraints) Performing minimization step: 337. Total energy = 2020.4464 kcal/mol (2019.3445 without restraints) Performing minimization step: 338. Total energy = 2017.2289 kcal/mol (2016.1284 without restraints) Performing minimization step: 339. Total energy = 2014.0230 kcal/mol (2012.9240 without restraints) Performing minimization step: 340. Total energy = 2010.8285 kcal/mol (2009.7310 without restraints) Performing minimization step: 341. Total energy = 2007.6461 kcal/mol (2006.5500 without restraints) Performing minimization step: 342. Total energy = 2004.4750 kcal/mol (2003.3803 without restraints) Performing minimization step: 343. Total energy = 2001.3153 kcal/mol (2000.2222 without restraints) Performing minimization step: 344. Total energy = 1998.1671 kcal/mol (1997.0754 without restraints) Performing minimization step: 345. Total energy = 1995.0303 kcal/mol (1993.9400 without restraints) Performing minimization step: 346. Total energy = 1991.9050 kcal/mol (1990.8161 without restraints) Performing minimization step: 347. Total energy = 1988.7910 kcal/mol (1987.7036 without restraints) Performing minimization step: 348. Total energy = 1985.6883 kcal/mol (1984.6023 without restraints) Performing minimization step: 349. Total energy = 1982.5972 kcal/mol (1981.5126 without restraints) Performing minimization step: 350. Total energy = 1979.5171 kcal/mol (1978.4340 without restraints) Performing minimization step: 351. Total energy = 1976.4481 kcal/mol (1975.3663 without restraints) Performing minimization step: 352. Total energy = 1973.3905 kcal/mol (1972.3103 without restraints) Performing minimization step: 353. Total energy = 1970.3441 kcal/mol (1969.2652 without restraints) Performing minimization step: 354. Total energy = 1967.3090 kcal/mol (1966.2317 without restraints) Performing minimization step: 355. Total energy = 1964.2849 kcal/mol (1963.2089 without restraints) Performing minimization step: 356. Total energy = 1961.2715 kcal/mol (1960.1969 without restraints) Performing minimization step: 357. Total energy = 1958.2694 kcal/mol (1957.1962 without restraints) Performing minimization step: 358. Total energy = 1955.2783 kcal/mol (1954.2065 without restraints) Performing minimization step: 359. Total energy = 1952.2979 kcal/mol (1951.2275 without restraints) Performing minimization step: 360. Total energy = 1949.3285 kcal/mol (1948.2594 without restraints) Performing minimization step: 361. Total energy = 1946.3700 kcal/mol (1945.3022 without restraints) Performing minimization step: 362. Total energy = 1943.4224 kcal/mol (1942.3562 without restraints) Performing minimization step: 363. Total energy = 1940.4858 kcal/mol (1939.4209 without restraints) Performing minimization step: 364. Total energy = 1937.5601 kcal/mol (1936.4966 without restraints) Performing minimization step: 365. Total energy = 1934.6451 kcal/mol (1933.5829 without restraints) Performing minimization step: 366. Total energy = 1931.7407 kcal/mol (1930.6799 without restraints) Performing minimization step: 367. Total energy = 1928.8470 kcal/mol (1927.7876 without restraints) Performing minimization step: 368. Total energy = 1925.9640 kcal/mol (1924.9060 without restraints) Performing minimization step: 369. Total energy = 1923.0914 kcal/mol (1922.0347 without restraints) Performing minimization step: 370. Total energy = 1920.2293 kcal/mol (1919.1740 without restraints) Performing minimization step: 371. Total energy = 1917.3781 kcal/mol (1916.3241 without restraints) Performing minimization step: 372. Total energy = 1914.5374 kcal/mol (1913.4847 without restraints) Performing minimization step: 373. Total energy = 1911.7071 kcal/mol (1910.6558 without restraints) Performing minimization step: 374. Total energy = 1908.8873 kcal/mol (1907.8374 without restraints) Performing minimization step: 375. Total energy = 1906.0782 kcal/mol (1905.0296 without restraints) Performing minimization step: 376. Total energy = 1903.2793 kcal/mol (1902.2319 without restraints) Performing minimization step: 377. Total energy = 1900.4906 kcal/mol (1899.4446 without restraints) Performing minimization step: 378. Total energy = 1897.7123 kcal/mol (1896.6677 without restraints) Performing minimization step: 379. Total energy = 1894.9443 kcal/mol (1893.9009 without restraints) Performing minimization step: 380. Total energy = 1892.1864 kcal/mol (1891.1443 without restraints) Performing minimization step: 381. Total energy = 1889.4388 kcal/mol (1888.3981 without restraints) Performing minimization step: 382. Total energy = 1886.7013 kcal/mol (1885.6618 without restraints) Performing minimization step: 383. Total energy = 1883.9739 kcal/mol (1882.9358 without restraints) Performing minimization step: 384. Total energy = 1881.2568 kcal/mol (1880.2201 without restraints) Performing minimization step: 385. Total energy = 1878.5499 kcal/mol (1877.5144 without restraints) Performing minimization step: 386. Total energy = 1875.8531 kcal/mol (1874.8189 without restraints) Performing minimization step: 387. Total energy = 1873.1660 kcal/mol (1872.1330 without restraints) Performing minimization step: 388. Total energy = 1870.4887 kcal/mol (1869.4571 without restraints) Performing minimization step: 389. Total energy = 1867.8214 kcal/mol (1866.7910 without restraints) Performing minimization step: 390. Total energy = 1865.1643 kcal/mol (1864.1351 without restraints) Performing minimization step: 391. Total energy = 1862.5169 kcal/mol (1861.4891 without restraints) Performing minimization step: 392. Total energy = 1859.8794 kcal/mol (1858.8528 without restraints) Performing minimization step: 393. Total energy = 1857.2513 kcal/mol (1856.2260 without restraints) Performing minimization step: 394. Total energy = 1854.6331 kcal/mol (1853.6090 without restraints) Performing minimization step: 395. Total energy = 1852.0245 kcal/mol (1851.0017 without restraints) Performing minimization step: 396. Total energy = 1849.4256 kcal/mol (1848.4041 without restraints) Performing minimization step: 397. Total energy = 1846.8363 kcal/mol (1845.8160 without restraints) Performing minimization step: 398. Total energy = 1844.2566 kcal/mol (1843.2376 without restraints) Performing minimization step: 399. Total energy = 1841.6867 kcal/mol (1840.6689 without restraints) Performing minimization step: 400. Total energy = 1839.1258 kcal/mol (1838.1092 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 401. Total energy = 1836.5746 kcal/mol (1835.5593 without restraints) Performing minimization step: 402. Total energy = 1834.0329 kcal/mol (1833.0188 without restraints) Performing minimization step: 403. Total energy = 1831.5006 kcal/mol (1830.4877 without restraints) Performing minimization step: 404. Total energy = 1828.9776 kcal/mol (1827.9660 without restraints) Performing minimization step: 405. Total energy = 1826.4640 kcal/mol (1825.4535 without restraints) Performing minimization step: 406. Total energy = 1823.9596 kcal/mol (1822.9504 without restraints) Performing minimization step: 407. Total energy = 1821.4645 kcal/mol (1820.4565 without restraints) Performing minimization step: 408. Total energy = 1818.9787 kcal/mol (1817.9719 without restraints) Performing minimization step: 409. Total energy = 1816.5020 kcal/mol (1815.4964 without restraints) Performing minimization step: 410. Total energy = 1814.0342 kcal/mol (1813.0298 without restraints) Performing minimization step: 411. Total energy = 1811.5758 kcal/mol (1810.5726 without restraints) Performing minimization step: 412. Total energy = 1809.1266 kcal/mol (1808.1246 without restraints) Performing minimization step: 413. Total energy = 1806.6863 kcal/mol (1805.6854 without restraints) Performing minimization step: 414. Total energy = 1804.2547 kcal/mol (1803.2550 without restraints) Performing minimization step: 415. Total energy = 1801.8325 kcal/mol (1800.8340 without restraints) Performing minimization step: 416. Total energy = 1799.4190 kcal/mol (1798.4217 without restraints) Performing minimization step: 417. Total energy = 1797.0142 kcal/mol (1796.0180 without restraints) Performing minimization step: 418. Total energy = 1794.6185 kcal/mol (1793.6235 without restraints) Performing minimization step: 419. Total energy = 1792.2315 kcal/mol (1791.2377 without restraints) Performing minimization step: 420. Total energy = 1789.8533 kcal/mol (1788.8606 without restraints) Performing minimization step: 421. Total energy = 1787.4838 kcal/mol (1786.4923 without restraints) Performing minimization step: 422. Total energy = 1785.1230 kcal/mol (1784.1326 without restraints) Performing minimization step: 423. Total energy = 1782.7709 kcal/mol (1781.7817 without restraints) Performing minimization step: 424. Total energy = 1780.4274 kcal/mol (1779.4393 without restraints) Performing minimization step: 425. Total energy = 1778.0922 kcal/mol (1777.1052 without restraints) Performing minimization step: 426. Total energy = 1775.7660 kcal/mol (1774.7802 without restraints) Performing minimization step: 427. Total energy = 1773.4481 kcal/mol (1772.4634 without restraints) Performing minimization step: 428. Total energy = 1771.1389 kcal/mol (1770.1553 without restraints) Performing minimization step: 429. Total energy = 1768.8380 kcal/mol (1767.8555 without restraints) Performing minimization step: 430. Total energy = 1766.5453 kcal/mol (1765.5640 without restraints) Performing minimization step: 431. Total energy = 1764.2611 kcal/mol (1763.2808 without restraints) Performing minimization step: 432. Total energy = 1761.9851 kcal/mol (1761.0060 without restraints) Performing minimization step: 433. Total energy = 1759.7174 kcal/mol (1758.7393 without restraints) Performing minimization step: 434. Total energy = 1757.4578 kcal/mol (1756.4809 without restraints) Performing minimization step: 435. Total energy = 1755.2065 kcal/mol (1754.2306 without restraints) Performing minimization step: 436. Total energy = 1752.9633 kcal/mol (1751.9886 without restraints) Performing minimization step: 437. Total energy = 1750.7283 kcal/mol (1749.7546 without restraints) Performing minimization step: 438. Total energy = 1748.5014 kcal/mol (1747.5288 without restraints) Performing minimization step: 439. Total energy = 1746.2826 kcal/mol (1745.3112 without restraints) Performing minimization step: 440. Total energy = 1744.0718 kcal/mol (1743.1013 without restraints) Performing minimization step: 441. Total energy = 1741.8688 kcal/mol (1740.8994 without restraints) Performing minimization step: 442. Total energy = 1739.6740 kcal/mol (1738.7057 without restraints) Performing minimization step: 443. Total energy = 1737.4869 kcal/mol (1736.5197 without restraints) Performing minimization step: 444. Total energy = 1735.3076 kcal/mol (1734.3414 without restraints) Performing minimization step: 445. Total energy = 1733.1362 kcal/mol (1732.1711 without restraints) Performing minimization step: 446. Total energy = 1730.9725 kcal/mol (1730.0084 without restraints) Performing minimization step: 447. Total energy = 1728.8165 kcal/mol (1727.8535 without restraints) Performing minimization step: 448. Total energy = 1726.6680 kcal/mol (1725.7060 without restraints) Performing minimization step: 449. Total energy = 1724.5274 kcal/mol (1723.5664 without restraints) Performing minimization step: 450. Total energy = 1722.3944 kcal/mol (1721.4344 without restraints) Performing minimization step: 451. Total energy = 1720.2688 kcal/mol (1719.3099 without restraints) Performing minimization step: 452. Total energy = 1718.1510 kcal/mol (1717.1930 without restraints) Performing minimization step: 453. Total energy = 1716.0405 kcal/mol (1715.0837 without restraints) Performing minimization step: 454. Total energy = 1713.9377 kcal/mol (1712.9819 without restraints) Performing minimization step: 455. Total energy = 1711.8423 kcal/mol (1710.8874 without restraints) Performing minimization step: 456. Total energy = 1709.7542 kcal/mol (1708.8003 without restraints) Performing minimization step: 457. Total energy = 1707.6737 kcal/mol (1706.7208 without restraints) Performing minimization step: 458. Total energy = 1705.6002 kcal/mol (1704.6484 without restraints) Performing minimization step: 459. Total energy = 1703.5341 kcal/mol (1702.5833 without restraints) Performing minimization step: 460. Total energy = 1701.4752 kcal/mol (1700.5253 without restraints) Performing minimization step: 461. Total energy = 1699.4233 kcal/mol (1698.4743 without restraints) Performing minimization step: 462. Total energy = 1697.3787 kcal/mol (1696.4308 without restraints) Performing minimization step: 463. Total energy = 1695.3413 kcal/mol (1694.3944 without restraints) Performing minimization step: 464. Total energy = 1693.3111 kcal/mol (1692.3653 without restraints) Performing minimization step: 465. Total energy = 1691.2879 kcal/mol (1690.3430 without restraints) Performing minimization step: 466. Total energy = 1689.2717 kcal/mol (1688.3277 without restraints) Performing minimization step: 467. Total energy = 1687.2623 kcal/mol (1686.3192 without restraints) Performing minimization step: 468. Total energy = 1685.2600 kcal/mol (1684.3180 without restraints) Performing minimization step: 469. Total energy = 1683.2645 kcal/mol (1682.3232 without restraints) Performing minimization step: 470. Total energy = 1681.2755 kcal/mol (1680.3354 without restraints) Performing minimization step: 471. Total energy = 1679.2938 kcal/mol (1678.3546 without restraints) Performing minimization step: 472. Total energy = 1677.3188 kcal/mol (1676.3805 without restraints) Performing minimization step: 473. Total energy = 1675.3506 kcal/mol (1674.4133 without restraints) Performing minimization step: 474. Total energy = 1673.3894 kcal/mol (1672.4530 without restraints) Performing minimization step: 475. Total energy = 1671.4348 kcal/mol (1670.4993 without restraints) Performing minimization step: 476. Total energy = 1669.4865 kcal/mol (1668.5518 without restraints) Performing minimization step: 477. Total energy = 1667.5445 kcal/mol (1666.6109 without restraints) Performing minimization step: 478. Total energy = 1665.6095 kcal/mol (1664.6768 without restraints) Performing minimization step: 479. Total energy = 1663.6813 kcal/mol (1662.7495 without restraints) Performing minimization step: 480. Total energy = 1661.7593 kcal/mol (1660.8285 without restraints) Performing minimization step: 481. Total energy = 1659.8438 kcal/mol (1658.9139 without restraints) Performing minimization step: 482. Total energy = 1657.9346 kcal/mol (1657.0054 without restraints) Performing minimization step: 483. Total energy = 1656.0318 kcal/mol (1655.1036 without restraints) Performing minimization step: 484. Total energy = 1654.1355 kcal/mol (1653.2082 without restraints) Performing minimization step: 485. Total energy = 1652.2454 kcal/mol (1651.3190 without restraints) Performing minimization step: 486. Total energy = 1650.3617 kcal/mol (1649.4362 without restraints) Performing minimization step: 487. Total energy = 1648.4845 kcal/mol (1647.5599 without restraints) Performing minimization step: 488. Total energy = 1646.6132 kcal/mol (1645.6895 without restraints) Performing minimization step: 489. Total energy = 1644.7478 kcal/mol (1643.8250 without restraints) Performing minimization step: 490. Total energy = 1642.8888 kcal/mol (1641.9669 without restraints) Performing minimization step: 491. Total energy = 1641.0358 kcal/mol (1640.1147 without restraints) Performing minimization step: 492. Total energy = 1639.1889 kcal/mol (1638.2687 without restraints) Performing minimization step: 493. Total energy = 1637.3481 kcal/mol (1636.4287 without restraints) Performing minimization step: 494. Total energy = 1635.5134 kcal/mol (1634.5949 without restraints) Performing minimization step: 495. Total energy = 1633.6846 kcal/mol (1632.7669 without restraints) Performing minimization step: 496. Total energy = 1631.8616 kcal/mol (1630.9448 without restraints) Performing minimization step: 497. Total energy = 1630.0443 kcal/mol (1629.1284 without restraints) Performing minimization step: 498. Total energy = 1628.2332 kcal/mol (1627.3180 without restraints) Performing minimization step: 499. Total energy = 1626.4278 kcal/mol (1625.5135 without restraints) Performing minimization step: 500. Total energy = 1624.6282 kcal/mol (1623.7147 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 501. Total energy = 1622.8346 kcal/mol (1621.9219 without restraints) Performing minimization step: 502. Total energy = 1621.0464 kcal/mol (1620.1345 without restraints) Performing minimization step: 503. Total energy = 1619.2639 kcal/mol (1618.3529 without restraints) Performing minimization step: 504. Total energy = 1617.4871 kcal/mol (1616.5770 without restraints) Performing minimization step: 505. Total energy = 1615.7157 kcal/mol (1614.8064 without restraints) Performing minimization step: 506. Total energy = 1613.9502 kcal/mol (1613.0416 without restraints) Performing minimization step: 507. Total energy = 1612.1902 kcal/mol (1611.2825 without restraints) Performing minimization step: 508. Total energy = 1610.4357 kcal/mol (1609.5288 without restraints) Performing minimization step: 509. Total energy = 1608.6867 kcal/mol (1607.7806 without restraints) Performing minimization step: 510. Total energy = 1606.9432 kcal/mol (1606.0379 without restraints) Performing minimization step: 511. Total energy = 1605.2051 kcal/mol (1604.3006 without restraints) Performing minimization step: 512. Total energy = 1603.4723 kcal/mol (1602.5687 without restraints) Performing minimization step: 513. Total energy = 1601.7450 kcal/mol (1600.8421 without restraints) Performing minimization step: 514. Total energy = 1600.0230 kcal/mol (1599.1208 without restraints) Performing minimization step: 515. Total energy = 1598.3062 kcal/mol (1597.4048 without restraints) Performing minimization step: 516. Total energy = 1596.5947 kcal/mol (1595.6941 without restraints) Performing minimization step: 517. Total energy = 1594.8884 kcal/mol (1593.9887 without restraints) Performing minimization step: 518. Total energy = 1593.1874 kcal/mol (1592.2884 without restraints) Performing minimization step: 519. Total energy = 1591.4917 kcal/mol (1590.5935 without restraints) Performing minimization step: 520. Total energy = 1589.8010 kcal/mol (1588.9035 without restraints) Performing minimization step: 521. Total energy = 1588.1153 kcal/mol (1587.2186 without restraints) Performing minimization step: 522. Total energy = 1586.4348 kcal/mol (1585.5388 without restraints) Performing minimization step: 523. Total energy = 1584.7592 kcal/mol (1583.8639 without restraints) Performing minimization step: 524. Total energy = 1583.0886 kcal/mol (1582.1942 without restraints) Performing minimization step: 525. Total energy = 1581.4231 kcal/mol (1580.5294 without restraints) Performing minimization step: 526. Total energy = 1579.7627 kcal/mol (1578.8699 without restraints) Performing minimization step: 527. Total energy = 1578.1074 kcal/mol (1577.2152 without restraints) Performing minimization step: 528. Total energy = 1576.4566 kcal/mol (1575.5652 without restraints) Performing minimization step: 529. Total energy = 1574.8108 kcal/mol (1573.9201 without restraints) Performing minimization step: 530. Total energy = 1573.1698 kcal/mol (1572.2798 without restraints) Performing minimization step: 531. Total energy = 1571.5336 kcal/mol (1570.6443 without restraints) Performing minimization step: 532. Total energy = 1569.9019 kcal/mol (1569.0134 without restraints) Performing minimization step: 533. Total energy = 1568.2748 kcal/mol (1567.3870 without restraints) Performing minimization step: 534. Total energy = 1566.6528 kcal/mol (1565.7658 without restraints) Performing minimization step: 535. Total energy = 1565.0358 kcal/mol (1564.1495 without restraints) Performing minimization step: 536. Total energy = 1563.4232 kcal/mol (1562.5375 without restraints) Performing minimization step: 537. Total energy = 1561.8152 kcal/mol (1560.9303 without restraints) Performing minimization step: 538. Total energy = 1560.2118 kcal/mol (1559.3276 without restraints) Performing minimization step: 539. Total energy = 1558.6129 kcal/mol (1557.7294 without restraints) Performing minimization step: 540. Total energy = 1557.0186 kcal/mol (1556.1358 without restraints) Performing minimization step: 541. Total energy = 1555.4291 kcal/mol (1554.5472 without restraints) Performing minimization step: 542. Total energy = 1553.8441 kcal/mol (1552.9627 without restraints) Performing minimization step: 543. Total energy = 1552.2634 kcal/mol (1551.3827 without restraints) Performing minimization step: 544. Total energy = 1550.6873 kcal/mol (1549.8073 without restraints) Performing minimization step: 545. Total energy = 1549.1154 kcal/mol (1548.2361 without restraints) Performing minimization step: 546. Total energy = 1547.5480 kcal/mol (1546.6694 without restraints) Performing minimization step: 547. Total energy = 1545.9845 kcal/mol (1545.1065 without restraints) Performing minimization step: 548. Total energy = 1544.4257 kcal/mol (1543.5485 without restraints) Performing minimization step: 549. Total energy = 1542.8714 kcal/mol (1541.9950 without restraints) Performing minimization step: 550. Total energy = 1541.3213 kcal/mol (1540.4455 without restraints) Performing minimization step: 551. Total energy = 1539.7751 kcal/mol (1538.8999 without restraints) Performing minimization step: 552. Total energy = 1538.2335 kcal/mol (1537.3590 without restraints) Performing minimization step: 553. Total energy = 1536.6961 kcal/mol (1535.8222 without restraints) Performing minimization step: 554. Total energy = 1535.1629 kcal/mol (1534.2897 without restraints) Performing minimization step: 555. Total energy = 1533.6337 kcal/mol (1532.7611 without restraints) Performing minimization step: 556. Total energy = 1532.1088 kcal/mol (1531.2369 without restraints) Performing minimization step: 557. Total energy = 1530.5880 kcal/mol (1529.7168 without restraints) Performing minimization step: 558. Total energy = 1529.0713 kcal/mol (1528.2008 without restraints) Performing minimization step: 559. Total energy = 1527.5587 kcal/mol (1526.6888 without restraints) Performing minimization step: 560. Total energy = 1526.0502 kcal/mol (1525.1809 without restraints) Performing minimization step: 561. Total energy = 1524.5455 kcal/mol (1523.6768 without restraints) Performing minimization step: 562. Total energy = 1523.0448 kcal/mol (1522.1769 without restraints) Performing minimization step: 563. Total energy = 1521.5486 kcal/mol (1520.6813 without restraints) Performing minimization step: 564. Total energy = 1520.0560 kcal/mol (1519.1893 without restraints) Performing minimization step: 565. Total energy = 1518.5675 kcal/mol (1517.7015 without restraints) Performing minimization step: 566. Total energy = 1517.0826 kcal/mol (1516.2170 without restraints) Performing minimization step: 567. Total energy = 1515.6015 kcal/mol (1514.7368 without restraints) Performing minimization step: 568. Total energy = 1514.1245 kcal/mol (1513.2603 without restraints) Performing minimization step: 569. Total energy = 1512.6513 kcal/mol (1511.7878 without restraints) Performing minimization step: 570. Total energy = 1511.1819 kcal/mol (1510.3191 without restraints) Performing minimization step: 571. Total energy = 1509.7164 kcal/mol (1508.8542 without restraints) Performing minimization step: 572. Total energy = 1508.2546 kcal/mol (1507.3930 without restraints) Performing minimization step: 573. Total energy = 1506.7968 kcal/mol (1505.9359 without restraints) Performing minimization step: 574. Total energy = 1505.3426 kcal/mol (1504.4822 without restraints) Performing minimization step: 575. Total energy = 1503.8920 kcal/mol (1503.0321 without restraints) Performing minimization step: 576. Total energy = 1502.4451 kcal/mol (1501.5861 without restraints) Performing minimization step: 577. Total energy = 1501.0015 kcal/mol (1500.1430 without restraints) Performing minimization step: 578. Total energy = 1499.5620 kcal/mol (1498.7041 without restraints) Performing minimization step: 579. Total energy = 1498.1261 kcal/mol (1497.2688 without restraints) Performing minimization step: 580. Total energy = 1496.6938 kcal/mol (1495.8372 without restraints) Performing minimization step: 581. Total energy = 1495.2652 kcal/mol (1494.4091 without restraints) Performing minimization step: 582. Total energy = 1493.8400 kcal/mol (1492.9846 without restraints) Performing minimization step: 583. Total energy = 1492.4185 kcal/mol (1491.5636 without restraints) Performing minimization step: 584. Total energy = 1491.0005 kcal/mol (1490.1462 without restraints) Performing minimization step: 585. Total energy = 1489.5860 kcal/mol (1488.7323 without restraints) Performing minimization step: 586. Total energy = 1488.1750 kcal/mol (1487.3219 without restraints) Performing minimization step: 587. Total energy = 1486.7675 kcal/mol (1485.9150 without restraints) Performing minimization step: 588. Total energy = 1485.3635 kcal/mol (1484.5116 without restraints) Performing minimization step: 589. Total energy = 1483.9629 kcal/mol (1483.1116 without restraints) Performing minimization step: 590. Total energy = 1482.5658 kcal/mol (1481.7151 without restraints) Performing minimization step: 591. Total energy = 1481.1720 kcal/mol (1480.3219 without restraints) Performing minimization step: 592. Total energy = 1479.7820 kcal/mol (1478.9324 without restraints) Performing minimization step: 593. Total energy = 1478.3950 kcal/mol (1477.5461 without restraints) Performing minimization step: 594. Total energy = 1477.0114 kcal/mol (1476.1630 without restraints) Performing minimization step: 595. Total energy = 1475.6311 kcal/mol (1474.7833 without restraints) Performing minimization step: 596. Total energy = 1474.2542 kcal/mol (1473.4070 without restraints) Performing minimization step: 597. Total energy = 1472.8806 kcal/mol (1472.0339 without restraints) Performing minimization step: 598. Total energy = 1471.5102 kcal/mol (1470.6641 without restraints) Performing minimization step: 599. Total energy = 1470.1431 kcal/mol (1469.2976 without restraints) Performing minimization step: 600. Total energy = 1468.7795 kcal/mol (1467.9346 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 601. Total energy = 1467.4190 kcal/mol (1466.5746 without restraints) Performing minimization step: 602. Total energy = 1466.0620 kcal/mol (1465.2182 without restraints) Performing minimization step: 603. Total energy = 1464.7080 kcal/mol (1463.8648 without restraints) Performing minimization step: 604. Total energy = 1463.3571 kcal/mol (1462.5145 without restraints) Performing minimization step: 605. Total energy = 1462.0099 kcal/mol (1461.1678 without restraints) Performing minimization step: 606. Total energy = 1460.6654 kcal/mol (1459.8239 without restraints) Performing minimization step: 607. Total energy = 1459.3240 kcal/mol (1458.4830 without restraints) Performing minimization step: 608. Total energy = 1457.9855 kcal/mol (1457.1451 without restraints) Performing minimization step: 609. Total energy = 1456.6503 kcal/mol (1455.8103 without restraints) Performing minimization step: 610. Total energy = 1455.3181 kcal/mol (1454.4789 without restraints) Performing minimization step: 611. Total energy = 1453.9892 kcal/mol (1453.1505 without restraints) Performing minimization step: 612. Total energy = 1452.6634 kcal/mol (1451.8252 without restraints) Performing minimization step: 613. Total energy = 1451.3406 kcal/mol (1450.5030 without restraints) Performing minimization step: 614. Total energy = 1450.0209 kcal/mol (1449.1838 without restraints) Performing minimization step: 615. Total energy = 1448.7040 kcal/mol (1447.8674 without restraints) Performing minimization step: 616. Total energy = 1447.3900 kcal/mol (1446.5541 without restraints) Performing minimization step: 617. Total energy = 1446.0792 kcal/mol (1445.2438 without restraints) Performing minimization step: 618. Total energy = 1444.7715 kcal/mol (1443.9367 without restraints) Performing minimization step: 619. Total energy = 1443.4668 kcal/mol (1442.6323 without restraints) Performing minimization step: 620. Total energy = 1442.1649 kcal/mol (1441.3312 without restraints) Performing minimization step: 621. Total energy = 1440.8660 kcal/mol (1440.0328 without restraints) Performing minimization step: 622. Total energy = 1439.5702 kcal/mol (1438.7375 without restraints) Performing minimization step: 623. Total energy = 1438.2774 kcal/mol (1437.4452 without restraints) Performing minimization step: 624. Total energy = 1436.9874 kcal/mol (1436.1558 without restraints) Performing minimization step: 625. Total energy = 1435.7007 kcal/mol (1434.8697 without restraints) Performing minimization step: 626. Total energy = 1434.4166 kcal/mol (1433.5861 without restraints) Performing minimization step: 627. Total energy = 1433.1354 kcal/mol (1432.3054 without restraints) Performing minimization step: 628. Total energy = 1431.8571 kcal/mol (1431.0276 without restraints) Performing minimization step: 629. Total energy = 1430.5816 kcal/mol (1429.7527 without restraints) Performing minimization step: 630. Total energy = 1429.3090 kcal/mol (1428.4806 without restraints) Performing minimization step: 631. Total energy = 1428.0392 kcal/mol (1427.2112 without restraints) Performing minimization step: 632. Total energy = 1426.7721 kcal/mol (1425.9448 without restraints) Performing minimization step: 633. Total energy = 1425.5080 kcal/mol (1424.6813 without restraints) Performing minimization step: 634. Total energy = 1424.2468 kcal/mol (1423.4205 without restraints) Performing minimization step: 635. Total energy = 1422.9885 kcal/mol (1422.1628 without restraints) Performing minimization step: 636. Total energy = 1421.7329 kcal/mol (1420.9077 without restraints) Performing minimization step: 637. Total energy = 1420.4798 kcal/mol (1419.6551 without restraints) Performing minimization step: 638. Total energy = 1419.2293 kcal/mol (1418.4051 without restraints) Performing minimization step: 639. Total energy = 1417.9821 kcal/mol (1417.1585 without restraints) Performing minimization step: 640. Total energy = 1416.7375 kcal/mol (1415.9144 without restraints) Performing minimization step: 641. Total energy = 1415.4958 kcal/mol (1414.6732 without restraints) Performing minimization step: 642. Total energy = 1414.2561 kcal/mol (1413.4341 without restraints) Performing minimization step: 643. Total energy = 1413.0197 kcal/mol (1412.1982 without restraints) Performing minimization step: 644. Total energy = 1411.7857 kcal/mol (1410.9647 without restraints) Performing minimization step: 645. Total energy = 1410.5547 kcal/mol (1409.7342 without restraints) Performing minimization step: 646. Total energy = 1409.3267 kcal/mol (1408.5068 without restraints) Performing minimization step: 647. Total energy = 1408.1011 kcal/mol (1407.2816 without restraints) Performing minimization step: 648. Total energy = 1406.8781 kcal/mol (1406.0592 without restraints) Performing minimization step: 649. Total energy = 1405.6577 kcal/mol (1404.8393 without restraints) Performing minimization step: 650. Total energy = 1404.4401 kcal/mol (1403.6222 without restraints) Performing minimization step: 651. Total energy = 1403.2251 kcal/mol (1402.4077 without restraints) Performing minimization step: 652. Total energy = 1402.0127 kcal/mol (1401.1957 without restraints) Performing minimization step: 653. Total energy = 1400.8029 kcal/mol (1399.9865 without restraints) Performing minimization step: 654. Total energy = 1399.5958 kcal/mol (1398.7800 without restraints) Performing minimization step: 655. Total energy = 1398.3914 kcal/mol (1397.5760 without restraints) Performing minimization step: 656. Total energy = 1397.1895 kcal/mol (1396.3745 without restraints) Performing minimization step: 657. Total energy = 1395.9899 kcal/mol (1395.1756 without restraints) Performing minimization step: 658. Total energy = 1394.7932 kcal/mol (1393.9794 without restraints) Performing minimization step: 659. Total energy = 1393.5992 kcal/mol (1392.7859 without restraints) Performing minimization step: 660. Total energy = 1392.4073 kcal/mol (1391.5945 without restraints) Performing minimization step: 661. Total energy = 1391.2187 kcal/mol (1390.4064 without restraints) Performing minimization step: 662. Total energy = 1390.0321 kcal/mol (1389.2203 without restraints) Performing minimization step: 663. Total energy = 1388.8483 kcal/mol (1388.0371 without restraints) Performing minimization step: 664. Total energy = 1387.6671 kcal/mol (1386.8564 without restraints) Performing minimization step: 665. Total energy = 1386.4885 kcal/mol (1385.6782 without restraints) Performing minimization step: 666. Total energy = 1385.3123 kcal/mol (1384.5026 without restraints) Performing minimization step: 667. Total energy = 1384.1390 kcal/mol (1383.3297 without restraints) Performing minimization step: 668. Total energy = 1382.9679 kcal/mol (1382.1592 without restraints) Performing minimization step: 669. Total energy = 1381.7996 kcal/mol (1380.9913 without restraints) Performing minimization step: 670. Total energy = 1380.6335 kcal/mol (1379.8258 without restraints) Performing minimization step: 671. Total energy = 1379.4700 kcal/mol (1378.6628 without restraints) Performing minimization step: 672. Total energy = 1378.3089 kcal/mol (1377.5022 without restraints) Performing minimization step: 673. Total energy = 1377.1503 kcal/mol (1376.3441 without restraints) Performing minimization step: 674. Total energy = 1375.9943 kcal/mol (1375.1886 without restraints) Performing minimization step: 675. Total energy = 1374.8408 kcal/mol (1374.0356 without restraints) Performing minimization step: 676. Total energy = 1373.6898 kcal/mol (1372.8852 without restraints) Performing minimization step: 677. Total energy = 1372.5413 kcal/mol (1371.7371 without restraints) Performing minimization step: 678. Total energy = 1371.3953 kcal/mol (1370.5916 without restraints) Performing minimization step: 679. Total energy = 1370.2514 kcal/mol (1369.4482 without restraints) Performing minimization step: 680. Total energy = 1369.1102 kcal/mol (1368.3075 without restraints) Performing minimization step: 681. Total energy = 1367.9713 kcal/mol (1367.1690 without restraints) Performing minimization step: 682. Total energy = 1366.8349 kcal/mol (1366.0332 without restraints) Performing minimization step: 683. Total energy = 1365.7011 kcal/mol (1364.8998 without restraints) Performing minimization step: 684. Total energy = 1364.5696 kcal/mol (1363.7689 without restraints) Performing minimization step: 685. Total energy = 1363.4406 kcal/mol (1362.6404 without restraints) Performing minimization step: 686. Total energy = 1362.3140 kcal/mol (1361.5143 without restraints) Performing minimization step: 687. Total energy = 1361.1899 kcal/mol (1360.3907 without restraints) Performing minimization step: 688. Total energy = 1360.0681 kcal/mol (1359.2694 without restraints) Performing minimization step: 689. Total energy = 1358.9488 kcal/mol (1358.1505 without restraints) Performing minimization step: 690. Total energy = 1357.8319 kcal/mol (1357.0341 without restraints) Performing minimization step: 691. Total energy = 1356.7174 kcal/mol (1355.9201 without restraints) Performing minimization step: 692. Total energy = 1355.6053 kcal/mol (1354.8086 without restraints) Performing minimization step: 693. Total energy = 1354.4956 kcal/mol (1353.6993 without restraints) Performing minimization step: 694. Total energy = 1353.3881 kcal/mol (1352.5923 without restraints) Performing minimization step: 695. Total energy = 1352.2832 kcal/mol (1351.4879 without restraints) Performing minimization step: 696. Total energy = 1351.1804 kcal/mol (1350.3857 without restraints) Performing minimization step: 697. Total energy = 1350.0803 kcal/mol (1349.2860 without restraints) Performing minimization step: 698. Total energy = 1348.9825 kcal/mol (1348.1887 without restraints) Performing minimization step: 699. Total energy = 1347.8871 kcal/mol (1347.0938 without restraints) Performing minimization step: 700. Total energy = 1346.7941 kcal/mol (1346.0013 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 701. Total energy = 1345.7034 kcal/mol (1344.9111 without restraints) Performing minimization step: 702. Total energy = 1344.6149 kcal/mol (1343.8231 without restraints) Performing minimization step: 703. Total energy = 1343.5289 kcal/mol (1342.7376 without restraints) Performing minimization step: 704. Total energy = 1342.4454 kcal/mol (1341.6547 without restraints) Performing minimization step: 705. Total energy = 1341.3648 kcal/mol (1340.5746 without restraints) Performing minimization step: 706. Total energy = 1340.2859 kcal/mol (1339.4961 without restraints) Performing minimization step: 707. Total energy = 1339.2094 kcal/mol (1338.4200 without restraints) Performing minimization step: 708. Total energy = 1338.1351 kcal/mol (1337.3462 without restraints) Performing minimization step: 709. Total energy = 1337.0632 kcal/mol (1336.2748 without restraints) Performing minimization step: 710. Total energy = 1335.9934 kcal/mol (1335.2055 without restraints) Performing minimization step: 711. Total energy = 1334.9266 kcal/mol (1334.1392 without restraints) Performing minimization step: 712. Total energy = 1333.8617 kcal/mol (1333.0748 without restraints) Performing minimization step: 713. Total energy = 1332.7991 kcal/mol (1332.0127 without restraints) Performing minimization step: 714. Total energy = 1331.7389 kcal/mol (1330.9530 without restraints) Performing minimization step: 715. Total energy = 1330.6811 kcal/mol (1329.8958 without restraints) Performing minimization step: 716. Total energy = 1329.6256 kcal/mol (1328.8407 without restraints) Performing minimization step: 717. Total energy = 1328.5723 kcal/mol (1327.7879 without restraints) Performing minimization step: 718. Total energy = 1327.5215 kcal/mol (1326.7376 without restraints) Performing minimization step: 719. Total energy = 1326.4729 kcal/mol (1325.6894 without restraints) Performing minimization step: 720. Total energy = 1325.4265 kcal/mol (1324.6435 without restraints) Performing minimization step: 721. Total energy = 1324.3823 kcal/mol (1323.5997 without restraints) Performing minimization step: 722. Total energy = 1323.3404 kcal/mol (1322.5584 without restraints) Performing minimization step: 723. Total energy = 1322.3008 kcal/mol (1321.5192 without restraints) Performing minimization step: 724. Total energy = 1321.2635 kcal/mol (1320.4825 without restraints) Performing minimization step: 725. Total energy = 1320.2286 kcal/mol (1319.4481 without restraints) Performing minimization step: 726. Total energy = 1319.1961 kcal/mol (1318.4161 without restraints) Performing minimization step: 727. Total energy = 1318.1658 kcal/mol (1317.3862 without restraints) Performing minimization step: 728. Total energy = 1317.1379 kcal/mol (1316.3589 without restraints) Performing minimization step: 729. Total energy = 1316.1122 kcal/mol (1315.3337 without restraints) Performing minimization step: 730. Total energy = 1315.0888 kcal/mol (1314.3107 without restraints) Performing minimization step: 731. Total energy = 1314.0676 kcal/mol (1313.2900 without restraints) Performing minimization step: 732. Total energy = 1313.0486 kcal/mol (1312.2716 without restraints) Performing minimization step: 733. Total energy = 1312.0320 kcal/mol (1311.2555 without restraints) Performing minimization step: 734. Total energy = 1311.0177 kcal/mol (1310.2416 without restraints) Performing minimization step: 735. Total energy = 1310.0055 kcal/mol (1309.2300 without restraints) Performing minimization step: 736. Total energy = 1308.9957 kcal/mol (1308.2206 without restraints) Performing minimization step: 737. Total energy = 1307.9881 kcal/mol (1307.2135 without restraints) Performing minimization step: 738. Total energy = 1306.9826 kcal/mol (1306.2085 without restraints) Performing minimization step: 739. Total energy = 1305.9793 kcal/mol (1305.2057 without restraints) Performing minimization step: 740. Total energy = 1304.9785 kcal/mol (1304.2054 without restraints) Performing minimization step: 741. Total energy = 1303.9799 kcal/mol (1303.2073 without restraints) Performing minimization step: 742. Total energy = 1302.9836 kcal/mol (1302.2115 without restraints) Performing minimization step: 743. Total energy = 1301.9896 kcal/mol (1301.2180 without restraints) Performing minimization step: 744. Total energy = 1300.9982 kcal/mol (1300.2271 without restraints) Performing minimization step: 745. Total energy = 1300.0087 kcal/mol (1299.2380 without restraints) Performing minimization step: 746. Total energy = 1299.0213 kcal/mol (1298.2512 without restraints) Performing minimization step: 747. Total energy = 1298.0360 kcal/mol (1297.2663 without restraints) Performing minimization step: 748. Total energy = 1297.0531 kcal/mol (1296.2839 without restraints) Performing minimization step: 749. Total energy = 1296.0727 kcal/mol (1295.3040 without restraints) Performing minimization step: 750. Total energy = 1295.0943 kcal/mol (1294.3261 without restraints) Performing minimization step: 751. Total energy = 1294.1184 kcal/mol (1293.3506 without restraints) Performing minimization step: 752. Total energy = 1293.1444 kcal/mol (1292.3772 without restraints) Performing minimization step: 753. Total energy = 1292.1727 kcal/mol (1291.4060 without restraints) Performing minimization step: 754. Total energy = 1291.2032 kcal/mol (1290.4370 without restraints) Performing minimization step: 755. Total energy = 1290.2359 kcal/mol (1289.4701 without restraints) Performing minimization step: 756. Total energy = 1289.2709 kcal/mol (1288.5056 without restraints) Performing minimization step: 757. Total energy = 1288.3080 kcal/mol (1287.5432 without restraints) Performing minimization step: 758. Total energy = 1287.3472 kcal/mol (1286.5829 without restraints) Performing minimization step: 759. Total energy = 1286.3889 kcal/mol (1285.6250 without restraints) Performing minimization step: 760. Total energy = 1285.4326 kcal/mol (1284.6693 without restraints) Performing minimization step: 761. Total energy = 1284.4786 kcal/mol (1283.7158 without restraints) Performing minimization step: 762. Total energy = 1283.5268 kcal/mol (1282.7644 without restraints) Performing minimization step: 763. Total energy = 1282.5772 kcal/mol (1281.8153 without restraints) Performing minimization step: 764. Total energy = 1281.6298 kcal/mol (1280.8684 without restraints) Performing minimization step: 765. Total energy = 1280.6846 kcal/mol (1279.9237 without restraints) Performing minimization step: 766. Total energy = 1279.7416 kcal/mol (1278.9812 without restraints) Performing minimization step: 767. Total energy = 1278.8008 kcal/mol (1278.0409 without restraints) Performing minimization step: 768. Total energy = 1277.8621 kcal/mol (1277.1027 without restraints) Performing minimization step: 769. Total energy = 1276.9255 kcal/mol (1276.1666 without restraints) Performing minimization step: 770. Total energy = 1275.9912 kcal/mol (1275.2328 without restraints) Performing minimization step: 771. Total energy = 1275.0589 kcal/mol (1274.3009 without restraints) Performing minimization step: 772. Total energy = 1274.1290 kcal/mol (1273.3715 without restraints) Performing minimization step: 773. Total energy = 1273.2010 kcal/mol (1272.4440 without restraints) Performing minimization step: 774. Total energy = 1272.2757 kcal/mol (1271.5192 without restraints) Performing minimization step: 775. Total energy = 1271.3523 kcal/mol (1270.5963 without restraints) Performing minimization step: 776. Total energy = 1270.4311 kcal/mol (1269.6756 without restraints) Performing minimization step: 777. Total energy = 1269.5121 kcal/mol (1268.7569 without restraints) Performing minimization step: 778. Total energy = 1268.5950 kcal/mol (1267.8405 without restraints) Performing minimization step: 779. Total energy = 1267.6802 kcal/mol (1266.9261 without restraints) Performing minimization step: 780. Total energy = 1266.7675 kcal/mol (1266.0140 without restraints) Performing minimization step: 781. Total energy = 1265.8571 kcal/mol (1265.1041 without restraints) Performing minimization step: 782. Total energy = 1264.9489 kcal/mol (1264.1963 without restraints) Performing minimization step: 783. Total energy = 1264.0427 kcal/mol (1263.2905 without restraints) Performing minimization step: 784. Total energy = 1263.1386 kcal/mol (1262.3870 without restraints) Performing minimization step: 785. Total energy = 1262.2367 kcal/mol (1261.4856 without restraints) Performing minimization step: 786. Total energy = 1261.3370 kcal/mol (1260.5864 without restraints) Performing minimization step: 787. Total energy = 1260.4395 kcal/mol (1259.6894 without restraints) Performing minimization step: 788. Total energy = 1259.5439 kcal/mol (1258.7942 without restraints) Performing minimization step: 789. Total energy = 1258.6503 kcal/mol (1257.9012 without restraints) Performing minimization step: 790. Total energy = 1257.7591 kcal/mol (1257.0105 without restraints) Performing minimization step: 791. Total energy = 1256.8701 kcal/mol (1256.1219 without restraints) Performing minimization step: 792. Total energy = 1255.9831 kcal/mol (1255.2354 without restraints) Performing minimization step: 793. Total energy = 1255.0983 kcal/mol (1254.3512 without restraints) Performing minimization step: 794. Total energy = 1254.2155 kcal/mol (1253.4688 without restraints) Performing minimization step: 795. Total energy = 1253.3349 kcal/mol (1252.5887 without restraints) Performing minimization step: 796. Total energy = 1252.4562 kcal/mol (1251.7105 without restraints) Performing minimization step: 797. Total energy = 1251.5796 kcal/mol (1250.8344 without restraints) Performing minimization step: 798. Total energy = 1250.7051 kcal/mol (1249.9603 without restraints) Performing minimization step: 799. Total energy = 1249.8329 kcal/mol (1249.0886 without restraints) Performing minimization step: 800. Total energy = 1248.9626 kcal/mol (1248.2188 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 801. Total energy = 1248.0945 kcal/mol (1247.3511 without restraints) Performing minimization step: 802. Total energy = 1247.2285 kcal/mol (1246.4857 without restraints) Performing minimization step: 803. Total energy = 1246.3648 kcal/mol (1245.6225 without restraints) Performing minimization step: 804. Total energy = 1245.5029 kcal/mol (1244.7610 without restraints) Performing minimization step: 805. Total energy = 1244.6431 kcal/mol (1243.9018 without restraints) Performing minimization step: 806. Total energy = 1243.7855 kcal/mol (1243.0446 without restraints) Performing minimization step: 807. Total energy = 1242.9300 kcal/mol (1242.1896 without restraints) Performing minimization step: 808. Total energy = 1242.0763 kcal/mol (1241.3362 without restraints) Performing minimization step: 809. Total energy = 1241.2247 kcal/mol (1240.4852 without restraints) Performing minimization step: 810. Total energy = 1240.3753 kcal/mol (1239.6364 without restraints) Performing minimization step: 811. Total energy = 1239.5282 kcal/mol (1238.7898 without restraints) Performing minimization step: 812. Total energy = 1238.6830 kcal/mol (1237.9450 without restraints) Performing minimization step: 813. Total energy = 1237.8397 kcal/mol (1237.1022 without restraints) Performing minimization step: 814. Total energy = 1236.9986 kcal/mol (1236.2616 without restraints) Performing minimization step: 815. Total energy = 1236.1594 kcal/mol (1235.4229 without restraints) Performing minimization step: 816. Total energy = 1235.3224 kcal/mol (1234.5863 without restraints) Performing minimization step: 817. Total energy = 1234.4873 kcal/mol (1233.7518 without restraints) Performing minimization step: 818. Total energy = 1233.6543 kcal/mol (1232.9193 without restraints) Performing minimization step: 819. Total energy = 1232.8234 kcal/mol (1232.0888 without restraints) Performing minimization step: 820. Total energy = 1231.9948 kcal/mol (1231.2607 without restraints) Performing minimization step: 821. Total energy = 1231.1678 kcal/mol (1230.4342 without restraints) Performing minimization step: 822. Total energy = 1230.3425 kcal/mol (1229.6094 without restraints) Performing minimization step: 823. Total energy = 1229.5195 kcal/mol (1228.7869 without restraints) Performing minimization step: 824. Total energy = 1228.6986 kcal/mol (1227.9665 without restraints) Performing minimization step: 825. Total energy = 1227.8797 kcal/mol (1227.1480 without restraints) Performing minimization step: 826. Total energy = 1227.0627 kcal/mol (1226.3315 without restraints) Performing minimization step: 827. Total energy = 1226.2477 kcal/mol (1225.5170 without restraints) Performing minimization step: 828. Total energy = 1225.4347 kcal/mol (1224.7045 without restraints) Performing minimization step: 829. Total energy = 1224.6237 kcal/mol (1223.8940 without restraints) Performing minimization step: 830. Total energy = 1223.8148 kcal/mol (1223.0855 without restraints) Performing minimization step: 831. Total energy = 1223.0077 kcal/mol (1222.2789 without restraints) Performing minimization step: 832. Total energy = 1222.2028 kcal/mol (1221.4745 without restraints) Performing minimization step: 833. Total energy = 1221.3997 kcal/mol (1220.6719 without restraints) Performing minimization step: 834. Total energy = 1220.5985 kcal/mol (1219.8712 without restraints) Performing minimization step: 835. Total energy = 1219.7994 kcal/mol (1219.0725 without restraints) Performing minimization step: 836. Total energy = 1219.0021 kcal/mol (1218.2757 without restraints) Performing minimization step: 837. Total energy = 1218.2068 kcal/mol (1217.4808 without restraints) Performing minimization step: 838. Total energy = 1217.4134 kcal/mol (1216.6879 without restraints) Performing minimization step: 839. Total energy = 1216.6219 kcal/mol (1215.8969 without restraints) Performing minimization step: 840. Total energy = 1215.8326 kcal/mol (1215.1081 without restraints) Performing minimization step: 841. Total energy = 1215.0448 kcal/mol (1214.3208 without restraints) Performing minimization step: 842. Total energy = 1214.2591 kcal/mol (1213.5356 without restraints) Performing minimization step: 843. Total energy = 1213.4753 kcal/mol (1212.7523 without restraints) Performing minimization step: 844. Total energy = 1212.6935 kcal/mol (1211.9709 without restraints) Performing minimization step: 845. Total energy = 1211.9135 kcal/mol (1211.1914 without restraints) Performing minimization step: 846. Total energy = 1211.1355 kcal/mol (1210.4139 without restraints) Performing minimization step: 847. Total energy = 1210.3593 kcal/mol (1209.6382 without restraints) Performing minimization step: 848. Total energy = 1209.5851 kcal/mol (1208.8644 without restraints) Performing minimization step: 849. Total energy = 1208.8127 kcal/mol (1208.0925 without restraints) Performing minimization step: 850. Total energy = 1208.0422 kcal/mol (1207.3225 without restraints) Performing minimization step: 851. Total energy = 1207.2735 kcal/mol (1206.5543 without restraints) Performing minimization step: 852. Total energy = 1206.5066 kcal/mol (1205.7878 without restraints) Performing minimization step: 853. Total energy = 1205.7417 kcal/mol (1205.0234 without restraints) Performing minimization step: 854. Total energy = 1204.9789 kcal/mol (1204.2610 without restraints) Performing minimization step: 855. Total energy = 1204.2177 kcal/mol (1203.5003 without restraints) Performing minimization step: 856. Total energy = 1203.4584 kcal/mol (1202.7415 without restraints) Performing minimization step: 857. Total energy = 1202.7009 kcal/mol (1201.9845 without restraints) Performing minimization step: 858. Total energy = 1201.9453 kcal/mol (1201.2293 without restraints) Performing minimization step: 859. Total energy = 1201.1916 kcal/mol (1200.4762 without restraints) Performing minimization step: 860. Total energy = 1200.4398 kcal/mol (1199.7247 without restraints) Performing minimization step: 861. Total energy = 1199.6896 kcal/mol (1198.9750 without restraints) Performing minimization step: 862. Total energy = 1198.9411 kcal/mol (1198.2270 without restraints) Performing minimization step: 863. Total energy = 1198.1946 kcal/mol (1197.4810 without restraints) Performing minimization step: 864. Total energy = 1197.4500 kcal/mol (1196.7370 without restraints) Performing minimization step: 865. Total energy = 1196.7074 kcal/mol (1195.9946 without restraints) Performing minimization step: 866. Total energy = 1195.9662 kcal/mol (1195.2539 without restraints) Performing minimization step: 867. Total energy = 1195.2269 kcal/mol (1194.5151 without restraints) Performing minimization step: 868. Total energy = 1194.4894 kcal/mol (1193.7781 without restraints) Performing minimization step: 869. Total energy = 1193.7537 kcal/mol (1193.0429 without restraints) Performing minimization step: 870. Total energy = 1193.0197 kcal/mol (1192.3094 without restraints) Performing minimization step: 871. Total energy = 1192.2876 kcal/mol (1191.5777 without restraints) Performing minimization step: 872. Total energy = 1191.5572 kcal/mol (1190.8478 without restraints) Performing minimization step: 873. Total energy = 1190.8286 kcal/mol (1190.1196 without restraints) Performing minimization step: 874. Total energy = 1190.1018 kcal/mol (1189.3933 without restraints) Performing minimization step: 875. Total energy = 1189.3767 kcal/mol (1188.6686 without restraints) Performing minimization step: 876. Total energy = 1188.6533 kcal/mol (1187.9457 without restraints) Performing minimization step: 877. Total energy = 1187.9317 kcal/mol (1187.2246 without restraints) Performing minimization step: 878. Total energy = 1187.2118 kcal/mol (1186.5052 without restraints) Performing minimization step: 879. Total energy = 1186.4937 kcal/mol (1185.7875 without restraints) Performing minimization step: 880. Total energy = 1185.7772 kcal/mol (1185.0715 without restraints) Performing minimization step: 881. Total energy = 1185.0623 kcal/mol (1184.3570 without restraints) Performing minimization step: 882. Total energy = 1184.3493 kcal/mol (1183.6445 without restraints) Performing minimization step: 883. Total energy = 1183.6380 kcal/mol (1182.9337 without restraints) Performing minimization step: 884. Total energy = 1182.9285 kcal/mol (1182.2246 without restraints) Performing minimization step: 885. Total energy = 1182.2207 kcal/mol (1181.5172 without restraints) Performing minimization step: 886. Total energy = 1181.5145 kcal/mol (1180.8115 without restraints) Performing minimization step: 887. Total energy = 1180.8100 kcal/mol (1180.1075 without restraints) Performing minimization step: 888. Total energy = 1180.1075 kcal/mol (1179.4054 without restraints) Performing minimization step: 889. Total energy = 1179.4060 kcal/mol (1178.7043 without restraints) Performing minimization step: 890. Total energy = 1178.7066 kcal/mol (1178.0055 without restraints) Performing minimization step: 891. Total energy = 1178.0091 kcal/mol (1177.3084 without restraints) Performing minimization step: 892. Total energy = 1177.3130 kcal/mol (1176.6127 without restraints) Performing minimization step: 893. Total energy = 1176.6185 kcal/mol (1175.9188 without restraints) Performing minimization step: 894. Total energy = 1175.9257 kcal/mol (1175.2264 without restraints) Performing minimization step: 895. Total energy = 1175.2346 kcal/mol (1174.5357 without restraints) Performing minimization step: 896. Total energy = 1174.5456 kcal/mol (1173.8472 without restraints) Performing minimization step: 897. Total energy = 1173.8578 kcal/mol (1173.1598 without restraints) Performing minimization step: 898. Total energy = 1173.1715 kcal/mol (1172.4740 without restraints) Performing minimization step: 899. Total energy = 1172.4870 kcal/mol (1171.7899 without restraints) Performing minimization step: 900. Total energy = 1171.8040 kcal/mol (1171.1074 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 901. Total energy = 1171.1226 kcal/mol (1170.4263 without restraints) Performing minimization step: 902. Total energy = 1170.4425 kcal/mol (1169.7468 without restraints) Performing minimization step: 903. Total energy = 1169.7644 kcal/mol (1169.0691 without restraints) Performing minimization step: 904. Total energy = 1169.0880 kcal/mol (1168.3932 without restraints) Performing minimization step: 905. Total energy = 1168.4132 kcal/mol (1167.7189 without restraints) Performing minimization step: 906. Total energy = 1167.7402 kcal/mol (1167.0463 without restraints) Performing minimization step: 907. Total energy = 1167.0685 kcal/mol (1166.3751 without restraints) Performing minimization step: 908. Total energy = 1166.3983 kcal/mol (1165.7053 without restraints) Performing minimization step: 909. Total energy = 1165.7298 kcal/mol (1165.0372 without restraints) Performing minimization step: 910. Total energy = 1165.0630 kcal/mol (1164.3711 without restraints) Performing minimization step: 911. Total energy = 1164.3977 kcal/mol (1163.7061 without restraints) Performing minimization step: 912. Total energy = 1163.7339 kcal/mol (1163.0427 without restraints) Performing minimization step: 913. Total energy = 1163.0716 kcal/mol (1162.3809 without restraints) Performing minimization step: 914. Total energy = 1162.4108 kcal/mol (1161.7205 without restraints) Performing minimization step: 915. Total energy = 1161.7516 kcal/mol (1161.0617 without restraints) Performing minimization step: 916. Total energy = 1161.0939 kcal/mol (1160.4045 without restraints) Performing minimization step: 917. Total energy = 1160.4376 kcal/mol (1159.7486 without restraints) Performing minimization step: 918. Total energy = 1159.7827 kcal/mol (1159.0942 without restraints) Performing minimization step: 919. Total energy = 1159.1296 kcal/mol (1158.4415 without restraints) Performing minimization step: 920. Total energy = 1158.4781 kcal/mol (1157.7904 without restraints) Performing minimization step: 921. Total energy = 1157.8280 kcal/mol (1157.1408 without restraints) Performing minimization step: 922. Total energy = 1157.1794 kcal/mol (1156.4927 without restraints) Performing minimization step: 923. Total energy = 1156.5323 kcal/mol (1155.8460 without restraints) Performing minimization step: 924. Total energy = 1155.8868 kcal/mol (1155.2010 without restraints) Performing minimization step: 925. Total energy = 1155.2428 kcal/mol (1154.5573 without restraints) Performing minimization step: 926. Total energy = 1154.6002 kcal/mol (1153.9152 without restraints) Performing minimization step: 927. Total energy = 1153.9592 kcal/mol (1153.2746 without restraints) Performing minimization step: 928. Total energy = 1153.3196 kcal/mol (1152.6355 without restraints) Performing minimization step: 929. Total energy = 1152.6814 kcal/mol (1151.9977 without restraints) Performing minimization step: 930. Total energy = 1152.0449 kcal/mol (1151.3617 without restraints) Performing minimization step: 931. Total energy = 1151.4098 kcal/mol (1150.7270 without restraints) Performing minimization step: 932. Total energy = 1150.7761 kcal/mol (1150.0937 without restraints) Performing minimization step: 933. Total energy = 1150.1439 kcal/mol (1149.4619 without restraints) Performing minimization step: 934. Total energy = 1149.5130 kcal/mol (1148.8315 without restraints) Performing minimization step: 935. Total energy = 1148.8839 kcal/mol (1148.2028 without restraints) Performing minimization step: 936. Total energy = 1148.2560 kcal/mol (1147.5754 without restraints) Performing minimization step: 937. Total energy = 1147.6296 kcal/mol (1146.9494 without restraints) Performing minimization step: 938. Total energy = 1147.0047 kcal/mol (1146.3248 without restraints) Performing minimization step: 939. Total energy = 1146.3810 kcal/mol (1145.7016 without restraints) Performing minimization step: 940. Total energy = 1145.7587 kcal/mol (1145.0799 without restraints) Performing minimization step: 941. Total energy = 1145.1380 kcal/mol (1144.4595 without restraints) Performing minimization step: 942. Total energy = 1144.5188 kcal/mol (1143.8408 without restraints) Performing minimization step: 943. Total energy = 1143.9009 kcal/mol (1143.2234 without restraints) Performing minimization step: 944. Total energy = 1143.2845 kcal/mol (1142.6073 without restraints) Performing minimization step: 945. Total energy = 1142.6694 kcal/mol (1141.9927 without restraints) Performing minimization step: 946. Total energy = 1142.0551 kcal/mol (1141.3789 without restraints) Performing minimization step: 947. Total energy = 1141.4426 kcal/mol (1140.7668 without restraints) Performing minimization step: 948. Total energy = 1140.8317 kcal/mol (1140.1563 without restraints) Performing minimization step: 949. Total energy = 1140.2227 kcal/mol (1139.5477 without restraints) Performing minimization step: 950. Total energy = 1139.6148 kcal/mol (1138.9404 without restraints) Performing minimization step: 951. Total energy = 1139.0082 kcal/mol (1138.3340 without restraints) Performing minimization step: 952. Total energy = 1138.4028 kcal/mol (1137.7291 without restraints) Performing minimization step: 953. Total energy = 1137.7988 kcal/mol (1137.1255 without restraints) Performing minimization step: 954. Total energy = 1137.1957 kcal/mol (1136.5229 without restraints) Performing minimization step: 955. Total energy = 1136.5946 kcal/mol (1135.9222 without restraints) Performing minimization step: 956. Total energy = 1135.9947 kcal/mol (1135.3227 without restraints) Performing minimization step: 957. Total energy = 1135.3961 kcal/mol (1134.7245 without restraints) Performing minimization step: 958. Total energy = 1134.7993 kcal/mol (1134.1281 without restraints) Performing minimization step: 959. Total energy = 1134.2034 kcal/mol (1133.5327 without restraints) Performing minimization step: 960. Total energy = 1133.6089 kcal/mol (1132.9386 without restraints) Performing minimization step: 961. Total energy = 1133.0156 kcal/mol (1132.3458 without restraints) Performing minimization step: 962. Total energy = 1132.4237 kcal/mol (1131.7543 without restraints) Performing minimization step: 963. Total energy = 1131.8332 kcal/mol (1131.1642 without restraints) Performing minimization step: 964. Total energy = 1131.2442 kcal/mol (1130.5756 without restraints) Performing minimization step: 965. Total energy = 1130.6563 kcal/mol (1129.9881 without restraints) Performing minimization step: 966. Total energy = 1130.0697 kcal/mol (1129.4019 without restraints) Performing minimization step: 967. Total energy = 1129.4844 kcal/mol (1128.8170 without restraints) Performing minimization step: 968. Total energy = 1128.9004 kcal/mol (1128.2335 without restraints) Performing minimization step: 969. Total energy = 1128.3177 kcal/mol (1127.6512 without restraints) Performing minimization step: 970. Total energy = 1127.7363 kcal/mol (1127.0702 without restraints) Performing minimization step: 971. Total energy = 1127.1562 kcal/mol (1126.4905 without restraints) Performing minimization step: 972. Total energy = 1126.5773 kcal/mol (1125.9121 without restraints) Performing minimization step: 973. Total energy = 1125.9996 kcal/mol (1125.3348 without restraints) Performing minimization step: 974. Total energy = 1125.4233 kcal/mol (1124.7589 without restraints) Performing minimization step: 975. Total energy = 1124.8485 kcal/mol (1124.1845 without restraints) Performing minimization step: 976. Total energy = 1124.2748 kcal/mol (1123.6112 without restraints) Performing minimization step: 977. Total energy = 1123.7025 kcal/mol (1123.0394 without restraints) Performing minimization step: 978. Total energy = 1123.1313 kcal/mol (1122.4686 without restraints) Performing minimization step: 979. Total energy = 1122.5614 kcal/mol (1121.8991 without restraints) Performing minimization step: 980. Total energy = 1121.9925 kcal/mol (1121.3306 without restraints) Performing minimization step: 981. Total energy = 1121.4250 kcal/mol (1120.7635 without restraints) Performing minimization step: 982. Total energy = 1120.8589 kcal/mol (1120.1978 without restraints) Performing minimization step: 983. Total energy = 1120.2937 kcal/mol (1119.6331 without restraints) Performing minimization step: 984. Total energy = 1119.7301 kcal/mol (1119.0698 without restraints) Performing minimization step: 985. Total energy = 1119.1676 kcal/mol (1118.5078 without restraints) Performing minimization step: 986. Total energy = 1118.6064 kcal/mol (1117.9470 without restraints) Performing minimization step: 987. Total energy = 1118.0464 kcal/mol (1117.3874 without restraints) Performing minimization step: 988. Total energy = 1117.4878 kcal/mol (1116.8292 without restraints) Performing minimization step: 989. Total energy = 1116.9303 kcal/mol (1116.2721 without restraints) Performing minimization step: 990. Total energy = 1116.3737 kcal/mol (1115.7159 without restraints) Performing minimization step: 991. Total energy = 1115.8188 kcal/mol (1115.1614 without restraints) Performing minimization step: 992. Total energy = 1115.2648 kcal/mol (1114.6079 without restraints) Performing minimization step: 993. Total energy = 1114.7124 kcal/mol (1114.0558 without restraints) Performing minimization step: 994. Total energy = 1114.1609 kcal/mol (1113.5047 without restraints) Performing minimization step: 995. Total energy = 1113.6106 kcal/mol (1112.9548 without restraints) Performing minimization step: 996. Total energy = 1113.0615 kcal/mol (1112.4062 without restraints) Performing minimization step: 997. Total energy = 1112.5133 kcal/mol (1111.8584 without restraints) Performing minimization step: 998. Total energy = 1111.9666 kcal/mol (1111.3121 without restraints) Performing minimization step: 999. Total energy = 1111.4210 kcal/mol (1110.7669 without restraints) Performing minimization step: 1000. Total energy = 1110.8767 kcal/mol (1110.2230 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 1110.3335 kcal/mol (1109.6802 without restraints) Performing minimization step: 1002. Total energy = 1109.7916 kcal/mol (1109.1387 without restraints) Performing minimization step: 1003. Total energy = 1109.2507 kcal/mol (1108.5982 without restraints) Performing minimization step: 1004. Total energy = 1108.7112 kcal/mol (1108.0591 without restraints) Performing minimization step: 1005. Total energy = 1108.1727 kcal/mol (1107.5211 without restraints) Performing minimization step: 1006. Total energy = 1107.6354 kcal/mol (1106.9841 without restraints) Performing minimization step: 1007. Total energy = 1107.0992 kcal/mol (1106.4483 without restraints) Performing minimization step: 1008. Total energy = 1106.5642 kcal/mol (1105.9137 without restraints) Performing minimization step: 1009. Total energy = 1106.0304 kcal/mol (1105.3803 without restraints) Performing minimization step: 1010. Total energy = 1105.4975 kcal/mol (1104.8478 without restraints) Performing minimization step: 1011. Total energy = 1104.9658 kcal/mol (1104.3164 without restraints) Performing minimization step: 1012. Total energy = 1104.4352 kcal/mol (1103.7863 without restraints) Performing minimization step: 1013. Total energy = 1103.9059 kcal/mol (1103.2574 without restraints) Performing minimization step: 1014. Total energy = 1103.3777 kcal/mol (1102.7297 without restraints) Performing minimization step: 1015. Total energy = 1102.8507 kcal/mol (1102.2030 without restraints) Performing minimization step: 1016. Total energy = 1102.3248 kcal/mol (1101.6775 without restraints) Performing minimization step: 1017. Total energy = 1101.8000 kcal/mol (1101.1531 without restraints) Performing minimization step: 1018. Total energy = 1101.2758 kcal/mol (1100.6293 without restraints) Performing minimization step: 1019. Total energy = 1100.7533 kcal/mol (1100.1072 without restraints) Performing minimization step: 1020. Total energy = 1100.2318 kcal/mol (1099.5861 without restraints) Performing minimization step: 1021. Total energy = 1099.7119 kcal/mol (1099.0668 without restraints) Performing minimization step: 1022. Total energy = 1099.1929 kcal/mol (1098.5480 without restraints) Performing minimization step: 1023. Total energy = 1098.6748 kcal/mol (1098.0303 without restraints) Performing minimization step: 1024. Total energy = 1098.1579 kcal/mol (1097.5138 without restraints) Performing minimization step: 1025. Total energy = 1097.6420 kcal/mol (1096.9983 without restraints) Performing minimization step: 1026. Total energy = 1097.1272 kcal/mol (1096.4839 without restraints) Performing minimization step: 1027. Total energy = 1096.6134 kcal/mol (1095.9705 without restraints) Performing minimization step: 1028. Total energy = 1096.1007 kcal/mol (1095.4580 without restraints) Performing minimization step: 1029. Total energy = 1095.5890 kcal/mol (1094.9469 without restraints) Performing minimization step: 1030. Total energy = 1095.0785 kcal/mol (1094.4368 without restraints) Performing minimization step: 1031. Total energy = 1094.5691 kcal/mol (1093.9278 without restraints) Performing minimization step: 1032. Total energy = 1094.0608 kcal/mol (1093.4198 without restraints) Performing minimization step: 1033. Total energy = 1093.5539 kcal/mol (1092.9134 without restraints) Performing minimization step: 1034. Total energy = 1093.0475 kcal/mol (1092.4074 without restraints) Performing minimization step: 1035. Total energy = 1092.5424 kcal/mol (1091.9026 without restraints) Performing minimization step: 1036. Total energy = 1092.0386 kcal/mol (1091.3992 without restraints) Performing minimization step: 1037. Total energy = 1091.5356 kcal/mol (1090.8966 without restraints) Performing minimization step: 1038. Total energy = 1091.0336 kcal/mol (1090.3950 without restraints) Performing minimization step: 1039. Total energy = 1090.5326 kcal/mol (1089.8944 without restraints) Performing minimization step: 1040. Total energy = 1090.0328 kcal/mol (1089.3949 without restraints) Performing minimization step: 1041. Total energy = 1089.5340 kcal/mol (1088.8965 without restraints) Performing minimization step: 1042. Total energy = 1089.0362 kcal/mol (1088.3992 without restraints) Performing minimization step: 1043. Total energy = 1088.5391 kcal/mol (1087.9023 without restraints) Performing minimization step: 1044. Total energy = 1088.0432 kcal/mol (1087.4069 without restraints) Performing minimization step: 1045. Total energy = 1087.5486 kcal/mol (1086.9127 without restraints) Performing minimization step: 1046. Total energy = 1087.0550 kcal/mol (1086.4195 without restraints) Performing minimization step: 1047. Total energy = 1086.5624 kcal/mol (1085.9273 without restraints) Performing minimization step: 1048. Total energy = 1086.0711 kcal/mol (1085.4364 without restraints) Performing minimization step: 1049. Total energy = 1085.5806 kcal/mol (1084.9464 without restraints) Performing minimization step: 1050. Total energy = 1085.0913 kcal/mol (1084.4573 without restraints) Performing minimization step: 1051. Total energy = 1084.6028 kcal/mol (1083.9693 without restraints) Performing minimization step: 1052. Total energy = 1084.1154 kcal/mol (1083.4822 without restraints) Performing minimization step: 1053. Total energy = 1083.6288 kcal/mol (1082.9959 without restraints) Performing minimization step: 1054. Total energy = 1083.1432 kcal/mol (1082.5108 without restraints) Performing minimization step: 1055. Total energy = 1082.6590 kcal/mol (1082.0270 without restraints) Performing minimization step: 1056. Total energy = 1082.1757 kcal/mol (1081.5442 without restraints) Performing minimization step: 1057. Total energy = 1081.6934 kcal/mol (1081.0621 without restraints) Performing minimization step: 1058. Total energy = 1081.2121 kcal/mol (1080.5811 without restraints) Performing minimization step: 1059. Total energy = 1080.7317 kcal/mol (1080.1011 without restraints) Performing minimization step: 1060. Total energy = 1080.2523 kcal/mol (1079.6222 without restraints) Performing minimization step: 1061. Total energy = 1079.7740 kcal/mol (1079.1442 without restraints) Performing minimization step: 1062. Total energy = 1079.2966 kcal/mol (1078.6672 without restraints) Performing minimization step: 1063. Total energy = 1078.8202 kcal/mol (1078.1911 without restraints) Performing minimization step: 1064. Total energy = 1078.3447 kcal/mol (1077.7161 without restraints) Performing minimization step: 1065. Total energy = 1077.8703 kcal/mol (1077.2420 without restraints) Performing minimization step: 1066. Total energy = 1077.3969 kcal/mol (1076.7690 without restraints) Performing minimization step: 1067. Total energy = 1076.9246 kcal/mol (1076.2971 without restraints) Performing minimization step: 1068. Total energy = 1076.4528 kcal/mol (1075.8257 without restraints) Performing minimization step: 1069. Total energy = 1075.9823 kcal/mol (1075.3555 without restraints) Performing minimization step: 1070. Total energy = 1075.5125 kcal/mol (1074.8861 without restraints) Performing minimization step: 1071. Total energy = 1075.0442 kcal/mol (1074.4181 without restraints) Performing minimization step: 1072. Total energy = 1074.5764 kcal/mol (1073.9508 without restraints) Performing minimization step: 1073. Total energy = 1074.1098 kcal/mol (1073.4845 without restraints) Performing minimization step: 1074. Total energy = 1073.6441 kcal/mol (1073.0192 without restraints) Performing minimization step: 1075. Total energy = 1073.1793 kcal/mol (1072.5548 without restraints) Performing minimization step: 1076. Total energy = 1072.7155 kcal/mol (1072.0914 without restraints) Performing minimization step: 1077. Total energy = 1072.2527 kcal/mol (1071.6289 without restraints) Performing minimization step: 1078. Total energy = 1071.7908 kcal/mol (1071.1674 without restraints) Performing minimization step: 1079. Total energy = 1071.3294 kcal/mol (1070.7064 without restraints) Performing minimization step: 1080. Total energy = 1070.8694 kcal/mol (1070.2467 without restraints) Performing minimization step: 1081. Total energy = 1070.4105 kcal/mol (1069.7883 without restraints) Performing minimization step: 1082. Total energy = 1069.9524 kcal/mol (1069.3305 without restraints) Performing minimization step: 1083. Total energy = 1069.4952 kcal/mol (1068.8737 without restraints) Performing minimization step: 1084. Total energy = 1069.0390 kcal/mol (1068.4178 without restraints) Performing minimization step: 1085. Total energy = 1068.5837 kcal/mol (1067.9629 without restraints) Performing minimization step: 1086. Total energy = 1068.1297 kcal/mol (1067.5092 without restraints) Performing minimization step: 1087. Total energy = 1067.6762 kcal/mol (1067.0562 without restraints) Performing minimization step: 1088. Total energy = 1067.2237 kcal/mol (1066.6040 without restraints) Performing minimization step: 1089. Total energy = 1066.7722 kcal/mol (1066.1528 without restraints) Performing minimization step: 1090. Total energy = 1066.3215 kcal/mol (1065.7025 without restraints) Performing minimization step: 1091. Total energy = 1065.8715 kcal/mol (1065.2529 without restraints) Performing minimization step: 1092. Total energy = 1065.4227 kcal/mol (1064.8044 without restraints) Performing minimization step: 1093. Total energy = 1064.9747 kcal/mol (1064.3569 without restraints) Performing minimization step: 1094. Total energy = 1064.5277 kcal/mol (1063.9102 without restraints) Performing minimization step: 1095. Total energy = 1064.0816 kcal/mol (1063.4645 without restraints) Performing minimization step: 1096. Total energy = 1063.6364 kcal/mol (1063.0197 without restraints) Performing minimization step: 1097. Total energy = 1063.1922 kcal/mol (1062.5758 without restraints) Performing minimization step: 1098. Total energy = 1062.7488 kcal/mol (1062.1329 without restraints) Performing minimization step: 1099. Total energy = 1062.3065 kcal/mol (1061.6908 without restraints) Performing minimization step: 1100. Total energy = 1061.8649 kcal/mol (1061.2496 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 1061.4243 kcal/mol (1060.8093 without restraints) Performing minimization step: 1102. Total energy = 1060.9845 kcal/mol (1060.3699 without restraints) Performing minimization step: 1103. Total energy = 1060.5456 kcal/mol (1059.9314 without restraints) Performing minimization step: 1104. Total energy = 1060.1077 kcal/mol (1059.4938 without restraints) Performing minimization step: 1105. Total energy = 1059.6706 kcal/mol (1059.0571 without restraints) Performing minimization step: 1106. Total energy = 1059.2344 kcal/mol (1058.6212 without restraints) Performing minimization step: 1107. Total energy = 1058.7991 kcal/mol (1058.1863 without restraints) Performing minimization step: 1108. Total energy = 1058.3647 kcal/mol (1057.7522 without restraints) Performing minimization step: 1109. Total energy = 1057.9311 kcal/mol (1057.3190 without restraints) Performing minimization step: 1110. Total energy = 1057.4982 kcal/mol (1056.8865 without restraints) Performing minimization step: 1111. Total energy = 1057.0660 kcal/mol (1056.4546 without restraints) Performing minimization step: 1112. Total energy = 1056.6354 kcal/mol (1056.0244 without restraints) Performing minimization step: 1113. Total energy = 1056.2054 kcal/mol (1055.5947 without restraints) Performing minimization step: 1114. Total energy = 1055.7762 kcal/mol (1055.1659 without restraints) Performing minimization step: 1115. Total energy = 1055.3479 kcal/mol (1054.7379 without restraints) Performing minimization step: 1116. Total energy = 1054.9205 kcal/mol (1054.3109 without restraints) Performing minimization step: 1117. Total energy = 1054.4939 kcal/mol (1053.8847 without restraints) Performing minimization step: 1118. Total energy = 1054.0682 kcal/mol (1053.4593 without restraints) Performing minimization step: 1119. Total energy = 1053.6434 kcal/mol (1053.0348 without restraints) Performing minimization step: 1120. Total energy = 1053.2194 kcal/mol (1052.6112 without restraints) Performing minimization step: 1121. Total energy = 1052.7964 kcal/mol (1052.1886 without restraints) Performing minimization step: 1122. Total energy = 1052.3744 kcal/mol (1051.7669 without restraints) Performing minimization step: 1123. Total energy = 1051.9529 kcal/mol (1051.3458 without restraints) Performing minimization step: 1124. Total energy = 1051.5324 kcal/mol (1050.9256 without restraints) Performing minimization step: 1125. Total energy = 1051.1127 kcal/mol (1050.5063 without restraints) Performing minimization step: 1126. Total energy = 1050.6938 kcal/mol (1050.0878 without restraints) Performing minimization step: 1127. Total energy = 1050.2756 kcal/mol (1049.6699 without restraints) Performing minimization step: 1128. Total energy = 1049.8585 kcal/mol (1049.2531 without restraints) Performing minimization step: 1129. Total energy = 1049.4422 kcal/mol (1048.8372 without restraints) Performing minimization step: 1130. Total energy = 1049.0268 kcal/mol (1048.4223 without restraints) Performing minimization step: 1131. Total energy = 1048.6123 kcal/mol (1048.0080 without restraints) Performing minimization step: 1132. Total energy = 1048.1985 kcal/mol (1047.5946 without restraints) Performing minimization step: 1133. Total energy = 1047.7856 kcal/mol (1047.1820 without restraints) Performing minimization step: 1134. Total energy = 1047.3737 kcal/mol (1046.7704 without restraints) Performing minimization step: 1135. Total energy = 1046.9624 kcal/mol (1046.3595 without restraints) Performing minimization step: 1136. Total energy = 1046.5519 kcal/mol (1045.9494 without restraints) Performing minimization step: 1137. Total energy = 1046.1423 kcal/mol (1045.5401 without restraints) Performing minimization step: 1138. Total energy = 1045.7335 kcal/mol (1045.1316 without restraints) Performing minimization step: 1139. Total energy = 1045.3255 kcal/mol (1044.7240 without restraints) Performing minimization step: 1140. Total energy = 1044.9182 kcal/mol (1044.3170 without restraints) Performing minimization step: 1141. Total energy = 1044.5118 kcal/mol (1043.9110 without restraints) Performing minimization step: 1142. Total energy = 1044.1063 kcal/mol (1043.5059 without restraints) Performing minimization step: 1143. Total energy = 1043.7017 kcal/mol (1043.1015 without restraints) Performing minimization step: 1144. Total energy = 1043.3143 kcal/mol (1042.6982 without restraints) Performing minimization step: 1145. Total energy = 1042.8948 kcal/mol (1042.2953 without restraints) Performing minimization step: 1146. Total energy = 1042.4925 kcal/mol (1041.8934 without restraints) Performing minimization step: 1147. Total energy = 1042.0912 kcal/mol (1041.4924 without restraints) Performing minimization step: 1148. Total energy = 1041.6906 kcal/mol (1041.0921 without restraints) Performing minimization step: 1149. Total energy = 1041.2906 kcal/mol (1040.6925 without restraints) Performing minimization step: 1150. Total energy = 1040.8914 kcal/mol (1040.2936 without restraints) Performing minimization step: 1151. Total energy = 1040.4932 kcal/mol (1039.8958 without restraints) Performing minimization step: 1152. Total energy = 1040.0958 kcal/mol (1039.4988 without restraints) Performing minimization step: 1153. Total energy = 1039.6993 kcal/mol (1039.1025 without restraints) Performing minimization step: 1154. Total energy = 1039.3036 kcal/mol (1038.7074 without restraints) Performing minimization step: 1155. Total energy = 1038.9087 kcal/mol (1038.3126 without restraints) Performing minimization step: 1156. Total energy = 1038.5145 kcal/mol (1037.9188 without restraints) Performing minimization step: 1157. Total energy = 1038.1211 kcal/mol (1037.5256 without restraints) Performing minimization step: 1158. Total energy = 1037.7284 kcal/mol (1037.1334 without restraints) Performing minimization step: 1159. Total energy = 1037.3366 kcal/mol (1036.7419 without restraints) Performing minimization step: 1160. Total energy = 1036.9457 kcal/mol (1036.3513 without restraints) Performing minimization step: 1161. Total energy = 1036.5555 kcal/mol (1035.9615 without restraints) Performing minimization step: 1162. Total energy = 1036.1662 kcal/mol (1035.5725 without restraints) Performing minimization step: 1163. Total energy = 1035.7776 kcal/mol (1035.1843 without restraints) Performing minimization step: 1164. Total energy = 1035.3898 kcal/mol (1034.7968 without restraints) Performing minimization step: 1165. Total energy = 1035.0028 kcal/mol (1034.4102 without restraints) Performing minimization step: 1166. Total energy = 1034.6166 kcal/mol (1034.0243 without restraints) Performing minimization step: 1167. Total energy = 1034.2312 kcal/mol (1033.6392 without restraints) Performing minimization step: 1168. Total energy = 1033.8465 kcal/mol (1033.2547 without restraints) Performing minimization step: 1169. Total energy = 1033.4627 kcal/mol (1032.8714 without restraints) Performing minimization step: 1170. Total energy = 1033.0796 kcal/mol (1032.4887 without restraints) Performing minimization step: 1171. Total energy = 1032.6973 kcal/mol (1032.1067 without restraints) Performing minimization step: 1172. Total energy = 1032.3159 kcal/mol (1031.7257 without restraints) Performing minimization step: 1173. Total energy = 1031.9352 kcal/mol (1031.3452 without restraints) Performing minimization step: 1174. Total energy = 1031.5553 kcal/mol (1030.9656 without restraints) Performing minimization step: 1175. Total energy = 1031.1761 kcal/mol (1030.5867 without restraints) Performing minimization step: 1176. Total energy = 1030.7976 kcal/mol (1030.2086 without restraints) Performing minimization step: 1177. Total energy = 1030.4200 kcal/mol (1029.8314 without restraints) Performing minimization step: 1178. Total energy = 1030.0435 kcal/mol (1029.4551 without restraints) Performing minimization step: 1179. Total energy = 1029.6676 kcal/mol (1029.0796 without restraints) Performing minimization step: 1180. Total energy = 1029.2923 kcal/mol (1028.7046 without restraints) Performing minimization step: 1181. Total energy = 1028.9177 kcal/mol (1028.3304 without restraints) Performing minimization step: 1182. Total energy = 1028.5439 kcal/mol (1027.9569 without restraints) Performing minimization step: 1183. Total energy = 1028.1711 kcal/mol (1027.5844 without restraints) Performing minimization step: 1184. Total energy = 1027.7990 kcal/mol (1027.2127 without restraints) Performing minimization step: 1185. Total energy = 1027.4276 kcal/mol (1026.8416 without restraints) Performing minimization step: 1186. Total energy = 1027.0568 kcal/mol (1026.4711 without restraints) Performing minimization step: 1187. Total energy = 1026.6869 kcal/mol (1026.1015 without restraints) Performing minimization step: 1188. Total energy = 1026.3177 kcal/mol (1025.7326 without restraints) Performing minimization step: 1189. Total energy = 1025.9494 kcal/mol (1025.3647 without restraints) Performing minimization step: 1190. Total energy = 1025.5818 kcal/mol (1024.9974 without restraints) Performing minimization step: 1191. Total energy = 1025.2149 kcal/mol (1024.6309 without restraints) Performing minimization step: 1192. Total energy = 1024.8488 kcal/mol (1024.2651 without restraints) Performing minimization step: 1193. Total energy = 1024.4834 kcal/mol (1023.9000 without restraints) Performing minimization step: 1194. Total energy = 1024.1188 kcal/mol (1023.5357 without restraints) Performing minimization step: 1195. Total energy = 1023.7545 kcal/mol (1023.1717 without restraints) Performing minimization step: 1196. Total energy = 1023.3913 kcal/mol (1022.8089 without restraints) Performing minimization step: 1197. Total energy = 1023.0290 kcal/mol (1022.4469 without restraints) Performing minimization step: 1198. Total energy = 1022.6673 kcal/mol (1022.0854 without restraints) Performing minimization step: 1199. Total energy = 1022.3065 kcal/mol (1021.7250 without restraints) Performing minimization step: 1200. Total energy = 1021.9464 kcal/mol (1021.3652 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 1021.5873 kcal/mol (1021.0064 without restraints) Performing minimization step: 1202. Total energy = 1021.2284 kcal/mol (1020.6479 without restraints) Performing minimization step: 1203. Total energy = 1020.8705 kcal/mol (1020.2904 without restraints) Performing minimization step: 1204. Total energy = 1020.5134 kcal/mol (1019.9336 without restraints) Performing minimization step: 1205. Total energy = 1020.1570 kcal/mol (1019.5775 without restraints) Performing minimization step: 1206. Total energy = 1019.8014 kcal/mol (1019.2222 without restraints) Performing minimization step: 1207. Total energy = 1019.4467 kcal/mol (1018.8678 without restraints) Performing minimization step: 1208. Total energy = 1019.0925 kcal/mol (1018.5139 without restraints) Performing minimization step: 1209. Total energy = 1018.7391 kcal/mol (1018.1609 without restraints) Performing minimization step: 1210. Total energy = 1018.3867 kcal/mol (1017.8087 without restraints) Performing minimization step: 1211. Total energy = 1018.0347 kcal/mol (1017.4571 without restraints) Performing minimization step: 1212. Total energy = 1017.6835 kcal/mol (1017.1063 without restraints) Performing minimization step: 1213. Total energy = 1017.3331 kcal/mol (1016.7561 without restraints) Performing minimization step: 1214. Total energy = 1016.9834 kcal/mol (1016.4067 without restraints) Performing minimization step: 1215. Total energy = 1016.6344 kcal/mol (1016.0580 without restraints) Performing minimization step: 1216. Total energy = 1016.2862 kcal/mol (1015.7103 without restraints) Performing minimization step: 1217. Total energy = 1015.9386 kcal/mol (1015.3629 without restraints) Performing minimization step: 1218. Total energy = 1015.5916 kcal/mol (1015.0162 without restraints) Performing minimization step: 1219. Total energy = 1015.2457 kcal/mol (1014.6707 without restraints) Performing minimization step: 1220. Total energy = 1014.9005 kcal/mol (1014.3258 without restraints) Performing minimization step: 1221. Total energy = 1014.5560 kcal/mol (1013.9816 without restraints) Performing minimization step: 1222. Total energy = 1014.2122 kcal/mol (1013.6380 without restraints) Performing minimization step: 1223. Total energy = 1013.8690 kcal/mol (1013.2952 without restraints) Performing minimization step: 1224. Total energy = 1013.5267 kcal/mol (1012.9532 without restraints) Performing minimization step: 1225. Total energy = 1013.1850 kcal/mol (1012.6118 without restraints) Performing minimization step: 1226. Total energy = 1012.8441 kcal/mol (1012.2712 without restraints) Performing minimization step: 1227. Total energy = 1012.5037 kcal/mol (1011.9311 without restraints) Performing minimization step: 1228. Total energy = 1012.1640 kcal/mol (1011.5918 without restraints) Performing minimization step: 1229. Total energy = 1011.8252 kcal/mol (1011.2533 without restraints) Performing minimization step: 1230. Total energy = 1011.4874 kcal/mol (1010.9158 without restraints) Performing minimization step: 1231. Total energy = 1011.1502 kcal/mol (1010.5789 without restraints) Performing minimization step: 1232. Total energy = 1010.8137 kcal/mol (1010.2427 without restraints) Performing minimization step: 1233. Total energy = 1010.4779 kcal/mol (1009.9072 without restraints) Performing minimization step: 1234. Total energy = 1010.1427 kcal/mol (1009.5722 without restraints) Performing minimization step: 1235. Total energy = 1009.8082 kcal/mol (1009.2381 without restraints) Performing minimization step: 1236. Total energy = 1009.4745 kcal/mol (1008.9048 without restraints) Performing minimization step: 1237. Total energy = 1009.1418 kcal/mol (1008.5723 without restraints) Performing minimization step: 1238. Total energy = 1008.8095 kcal/mol (1008.2404 without restraints) Performing minimization step: 1239. Total energy = 1008.4778 kcal/mol (1007.9090 without restraints) Performing minimization step: 1240. Total energy = 1008.1470 kcal/mol (1007.5785 without restraints) Performing minimization step: 1241. Total energy = 1007.8169 kcal/mol (1007.2488 without restraints) Performing minimization step: 1242. Total energy = 1007.4877 kcal/mol (1006.9197 without restraints) Performing minimization step: 1243. Total energy = 1007.1591 kcal/mol (1006.5916 without restraints) Performing minimization step: 1244. Total energy = 1006.8312 kcal/mol (1006.2638 without restraints) Performing minimization step: 1245. Total energy = 1006.5039 kcal/mol (1005.9369 without restraints) Performing minimization step: 1246. Total energy = 1006.1774 kcal/mol (1005.6107 without restraints) Performing minimization step: 1247. Total energy = 1005.8517 kcal/mol (1005.2853 without restraints) Performing minimization step: 1248. Total energy = 1005.5267 kcal/mol (1004.9607 without restraints) Performing minimization step: 1249. Total energy = 1005.2024 kcal/mol (1004.6367 without restraints) Performing minimization step: 1250. Total energy = 1004.8789 kcal/mol (1004.3134 without restraints) Performing minimization step: 1251. Total energy = 1004.5560 kcal/mol (1003.9908 without restraints) Performing minimization step: 1252. Total energy = 1004.2337 kcal/mol (1003.6688 without restraints) Performing minimization step: 1253. Total energy = 1003.9122 kcal/mol (1003.3477 without restraints) Performing minimization step: 1254. Total energy = 1003.5914 kcal/mol (1003.0272 without restraints) Performing minimization step: 1255. Total energy = 1003.2712 kcal/mol (1002.7073 without restraints) Performing minimization step: 1256. Total energy = 1002.9523 kcal/mol (1002.3887 without restraints) Performing minimization step: 1257. Total energy = 1002.6337 kcal/mol (1002.0704 without restraints) Performing minimization step: 1258. Total energy = 1002.3157 kcal/mol (1001.7527 without restraints) Performing minimization step: 1259. Total energy = 1001.9985 kcal/mol (1001.4359 without restraints) Performing minimization step: 1260. Total energy = 1001.6821 kcal/mol (1001.1197 without restraints) Performing minimization step: 1261. Total energy = 1001.3663 kcal/mol (1000.8042 without restraints) Performing minimization step: 1262. Total energy = 1001.0512 kcal/mol (1000.4895 without restraints) Performing minimization step: 1263. Total energy = 1000.7368 kcal/mol (1000.1754 without restraints) Performing minimization step: 1264. Total energy = 1000.4232 kcal/mol (999.8620 without restraints) Performing minimization step: 1265. Total energy = 1000.1109 kcal/mol (999.5501 without restraints) Performing minimization step: 1266. Total energy = 999.7985 kcal/mol (999.2379 without restraints) Performing minimization step: 1267. Total energy = 999.4869 kcal/mol (998.9266 without restraints) Performing minimization step: 1268. Total energy = 999.1760 kcal/mol (998.6161 without restraints) Performing minimization step: 1269. Total energy = 998.8659 kcal/mol (998.3063 without restraints) Performing minimization step: 1270. Total energy = 998.5566 kcal/mol (997.9972 without restraints) Performing minimization step: 1271. Total energy = 998.2478 kcal/mol (997.6888 without restraints) Performing minimization step: 1272. Total energy = 997.9397 kcal/mol (997.3809 without restraints) Performing minimization step: 1273. Total energy = 997.6324 kcal/mol (997.0739 without restraints) Performing minimization step: 1274. Total energy = 997.3258 kcal/mol (996.7676 without restraints) Performing minimization step: 1275. Total energy = 997.0199 kcal/mol (996.4620 without restraints) Performing minimization step: 1276. Total energy = 996.7146 kcal/mol (996.1570 without restraints) Performing minimization step: 1277. Total energy = 996.4101 kcal/mol (995.8528 without restraints) Performing minimization step: 1278. Total energy = 996.1063 kcal/mol (995.5493 without restraints) Performing minimization step: 1279. Total energy = 995.8032 kcal/mol (995.2465 without restraints) Performing minimization step: 1280. Total energy = 995.5008 kcal/mol (994.9444 without restraints) Performing minimization step: 1281. Total energy = 995.1989 kcal/mol (994.6428 without restraints) Performing minimization step: 1282. Total energy = 994.8979 kcal/mol (994.3421 without restraints) Performing minimization step: 1283. Total energy = 994.5976 kcal/mol (994.0421 without restraints) Performing minimization step: 1284. Total energy = 994.2980 kcal/mol (993.7428 without restraints) Performing minimization step: 1285. Total energy = 993.9991 kcal/mol (993.4442 without restraints) Performing minimization step: 1286. Total energy = 993.7009 kcal/mol (993.1463 without restraints) Performing minimization step: 1287. Total energy = 993.4035 kcal/mol (992.8493 without restraints) Performing minimization step: 1288. Total energy = 993.1068 kcal/mol (992.5527 without restraints) Performing minimization step: 1289. Total energy = 992.8106 kcal/mol (992.2569 without restraints) Performing minimization step: 1290. Total energy = 992.5151 kcal/mol (991.9618 without restraints) Performing minimization step: 1291. Total energy = 992.2205 kcal/mol (991.6674 without restraints) Performing minimization step: 1292. Total energy = 991.9264 kcal/mol (991.3736 without restraints) Performing minimization step: 1293. Total energy = 991.6332 kcal/mol (991.0807 without restraints) Performing minimization step: 1294. Total energy = 991.3408 kcal/mol (990.7885 without restraints) Performing minimization step: 1295. Total energy = 991.0491 kcal/mol (990.4971 without restraints) Performing minimization step: 1296. Total energy = 990.7578 kcal/mol (990.2061 without restraints) Performing minimization step: 1297. Total energy = 990.4672 kcal/mol (989.9158 without restraints) Performing minimization step: 1298. Total energy = 990.1776 kcal/mol (989.6265 without restraints) Performing minimization step: 1299. Total energy = 989.8886 kcal/mol (989.3378 without restraints) Performing minimization step: 1300. Total energy = 989.6001 kcal/mol (989.0496 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 989.3122 kcal/mol (988.7620 without restraints) Performing minimization step: 1302. Total energy = 989.0251 kcal/mol (988.4752 without restraints) Performing minimization step: 1303. Total energy = 988.7386 kcal/mol (988.1890 without restraints) Performing minimization step: 1304. Total energy = 988.4529 kcal/mol (987.9035 without restraints) Performing minimization step: 1305. Total energy = 988.1679 kcal/mol (987.6190 without restraints) Performing minimization step: 1306. Total energy = 987.8837 kcal/mol (987.3349 without restraints) Performing minimization step: 1307. Total energy = 987.5998 kcal/mol (987.0512 without restraints) Performing minimization step: 1308. Total energy = 987.3169 kcal/mol (986.7687 without restraints) Performing minimization step: 1309. Total energy = 987.0345 kcal/mol (986.4866 without restraints) Performing minimization step: 1310. Total energy = 986.7529 kcal/mol (986.2052 without restraints) Performing minimization step: 1311. Total energy = 986.4719 kcal/mol (985.9245 without restraints) Performing minimization step: 1312. Total energy = 986.1914 kcal/mol (985.6442 without restraints) Performing minimization step: 1313. Total energy = 985.9116 kcal/mol (985.3649 without restraints) Performing minimization step: 1314. Total energy = 985.6329 kcal/mol (985.0864 without restraints) Performing minimization step: 1315. Total energy = 985.3546 kcal/mol (984.8084 without restraints) Performing minimization step: 1316. Total energy = 985.0771 kcal/mol (984.5312 without restraints) Performing minimization step: 1317. Total energy = 984.8002 kcal/mol (984.2545 without restraints) Performing minimization step: 1318. Total energy = 984.5243 kcal/mol (983.9790 without restraints) Performing minimization step: 1319. Total energy = 984.2490 kcal/mol (983.7039 without restraints) Performing minimization step: 1320. Total energy = 983.9741 kcal/mol (983.4293 without restraints) Performing minimization step: 1321. Total energy = 983.6999 kcal/mol (983.1554 without restraints) Performing minimization step: 1322. Total energy = 983.4264 kcal/mol (982.8822 without restraints) Performing minimization step: 1323. Total energy = 983.1536 kcal/mol (982.6096 without restraints) Performing minimization step: 1324. Total energy = 982.8814 kcal/mol (982.3377 without restraints) Performing minimization step: 1325. Total energy = 982.6099 kcal/mol (982.0665 without restraints) Performing minimization step: 1326. Total energy = 982.3392 kcal/mol (981.7962 without restraints) Performing minimization step: 1327. Total energy = 982.0691 kcal/mol (981.5263 without restraints) Performing minimization step: 1328. Total energy = 981.7998 kcal/mol (981.2572 without restraints) Performing minimization step: 1329. Total energy = 981.5309 kcal/mol (980.9887 without restraints) Performing minimization step: 1330. Total energy = 981.2628 kcal/mol (980.7208 without restraints) Performing minimization step: 1331. Total energy = 980.9953 kcal/mol (980.4536 without restraints) Performing minimization step: 1332. Total energy = 980.7288 kcal/mol (980.1874 without restraints) Performing minimization step: 1333. Total energy = 980.4623 kcal/mol (979.9212 without restraints) Performing minimization step: 1334. Total energy = 980.1970 kcal/mol (979.6562 without restraints) Performing minimization step: 1335. Total energy = 979.9322 kcal/mol (979.3916 without restraints) Performing minimization step: 1336. Total energy = 979.6681 kcal/mol (979.1278 without restraints) Performing minimization step: 1337. Total energy = 979.4047 kcal/mol (978.8647 without restraints) Performing minimization step: 1338. Total energy = 979.1419 kcal/mol (978.6022 without restraints) Performing minimization step: 1339. Total energy = 978.8797 kcal/mol (978.3402 without restraints) Performing minimization step: 1340. Total energy = 978.6182 kcal/mol (978.0790 without restraints) Performing minimization step: 1341. Total energy = 978.3574 kcal/mol (977.8185 without restraints) Performing minimization step: 1342. Total energy = 978.0970 kcal/mol (977.5583 without restraints) Performing minimization step: 1343. Total energy = 977.8375 kcal/mol (977.2991 without restraints) Performing minimization step: 1344. Total energy = 977.5785 kcal/mol (977.0405 without restraints) Performing minimization step: 1345. Total energy = 977.3204 kcal/mol (976.7826 without restraints) Performing minimization step: 1346. Total energy = 977.0630 kcal/mol (976.5255 without restraints) Performing minimization step: 1347. Total energy = 976.8059 kcal/mol (976.2686 without restraints) Performing minimization step: 1348. Total energy = 976.5495 kcal/mol (976.0125 without restraints) Performing minimization step: 1349. Total energy = 976.2939 kcal/mol (975.7572 without restraints) Performing minimization step: 1350. Total energy = 976.0390 kcal/mol (975.5025 without restraints) Performing minimization step: 1351. Total energy = 975.7847 kcal/mol (975.2485 without restraints) Performing minimization step: 1352. Total energy = 975.5317 kcal/mol (974.9958 without restraints) Performing minimization step: 1353. Total energy = 975.2788 kcal/mol (974.7432 without restraints) Performing minimization step: 1354. Total energy = 975.0263 kcal/mol (974.4909 without restraints) Performing minimization step: 1355. Total energy = 974.7746 kcal/mol (974.2395 without restraints) Performing minimization step: 1356. Total energy = 974.5237 kcal/mol (973.9890 without restraints) Performing minimization step: 1357. Total energy = 974.2734 kcal/mol (973.7389 without restraints) Performing minimization step: 1358. Total energy = 974.0236 kcal/mol (973.4892 without restraints) Performing minimization step: 1359. Total energy = 973.7744 kcal/mol (973.2404 without restraints) Performing minimization step: 1360. Total energy = 973.5259 kcal/mol (972.9922 without restraints) Performing minimization step: 1361. Total energy = 973.2783 kcal/mol (972.7448 without restraints) Performing minimization step: 1362. Total energy = 973.0311 kcal/mol (972.4979 without restraints) Performing minimization step: 1363. Total energy = 972.7848 kcal/mol (972.2519 without restraints) Performing minimization step: 1364. Total energy = 972.5390 kcal/mol (972.0065 without restraints) Performing minimization step: 1365. Total energy = 972.2939 kcal/mol (971.7615 without restraints) Performing minimization step: 1366. Total energy = 972.0493 kcal/mol (971.5171 without restraints) Performing minimization step: 1367. Total energy = 971.8055 kcal/mol (971.2737 without restraints) Performing minimization step: 1368. Total energy = 971.5622 kcal/mol (971.0306 without restraints) Performing minimization step: 1369. Total energy = 971.3195 kcal/mol (970.7881 without restraints) Performing minimization step: 1370. Total energy = 971.0774 kcal/mol (970.5464 without restraints) Performing minimization step: 1371. Total energy = 970.8360 kcal/mol (970.3052 without restraints) Performing minimization step: 1372. Total energy = 970.5950 kcal/mol (970.0645 without restraints) Performing minimization step: 1373. Total energy = 970.3549 kcal/mol (969.8246 without restraints) Performing minimization step: 1374. Total energy = 970.1153 kcal/mol (969.5853 without restraints) Performing minimization step: 1375. Total energy = 969.8764 kcal/mol (969.3467 without restraints) Performing minimization step: 1376. Total energy = 969.6383 kcal/mol (969.1088 without restraints) Performing minimization step: 1377. Total energy = 969.4006 kcal/mol (968.8714 without restraints) Performing minimization step: 1378. Total energy = 969.1637 kcal/mol (968.6348 without restraints) Performing minimization step: 1379. Total energy = 968.9273 kcal/mol (968.3986 without restraints) Performing minimization step: 1380. Total energy = 968.6915 kcal/mol (968.1631 without restraints) Performing minimization step: 1381. Total energy = 968.4561 kcal/mol (967.9280 without restraints) Performing minimization step: 1382. Total energy = 968.2216 kcal/mol (967.6937 without restraints) Performing minimization step: 1383. Total energy = 967.9875 kcal/mol (967.4599 without restraints) Performing minimization step: 1384. Total energy = 967.7542 kcal/mol (967.2268 without restraints) Performing minimization step: 1385. Total energy = 967.5216 kcal/mol (966.9946 without restraints) Performing minimization step: 1386. Total energy = 967.2897 kcal/mol (966.7628 without restraints) Performing minimization step: 1387. Total energy = 967.0583 kcal/mol (966.5316 without restraints) Performing minimization step: 1388. Total energy = 966.8274 kcal/mol (966.3010 without restraints) Performing minimization step: 1389. Total energy = 966.5972 kcal/mol (966.0712 without restraints) Performing minimization step: 1390. Total energy = 966.3677 kcal/mol (965.8419 without restraints) Performing minimization step: 1391. Total energy = 966.1387 kcal/mol (965.6131 without restraints) Performing minimization step: 1392. Total energy = 965.9102 kcal/mol (965.3849 without restraints) Performing minimization step: 1393. Total energy = 965.6824 kcal/mol (965.1573 without restraints) Performing minimization step: 1394. Total energy = 965.4552 kcal/mol (964.9304 without restraints) Performing minimization step: 1395. Total energy = 965.2288 kcal/mol (964.7042 without restraints) Performing minimization step: 1396. Total energy = 965.0029 kcal/mol (964.4786 without restraints) Performing minimization step: 1397. Total energy = 964.7776 kcal/mol (964.2535 without restraints) Performing minimization step: 1398. Total energy = 964.5530 kcal/mol (964.0292 without restraints) Performing minimization step: 1399. Total energy = 964.3288 kcal/mol (963.8052 without restraints) Performing minimization step: 1400. Total energy = 964.1052 kcal/mol (963.5818 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 963.8818 kcal/mol (963.3587 without restraints) Performing minimization step: 1402. Total energy = 963.6591 kcal/mol (963.1363 without restraints) Performing minimization step: 1403. Total energy = 963.4373 kcal/mol (962.9148 without restraints) Performing minimization step: 1404. Total energy = 963.2161 kcal/mol (962.6938 without restraints) Performing minimization step: 1405. Total energy = 962.9956 kcal/mol (962.4734 without restraints) Performing minimization step: 1406. Total energy = 962.7754 kcal/mol (962.2536 without restraints) Performing minimization step: 1407. Total energy = 962.5560 kcal/mol (962.0344 without restraints) Performing minimization step: 1408. Total energy = 962.3371 kcal/mol (961.8158 without restraints) Performing minimization step: 1409. Total energy = 962.1188 kcal/mol (961.5978 without restraints) Performing minimization step: 1410. Total energy = 961.9011 kcal/mol (961.3803 without restraints) Performing minimization step: 1411. Total energy = 961.6840 kcal/mol (961.1634 without restraints) Performing minimization step: 1412. Total energy = 961.4674 kcal/mol (960.9471 without restraints) Performing minimization step: 1413. Total energy = 961.2514 kcal/mol (960.7314 without restraints) Performing minimization step: 1414. Total energy = 961.0357 kcal/mol (960.5158 without restraints) Performing minimization step: 1415. Total energy = 960.8208 kcal/mol (960.3012 without restraints) Performing minimization step: 1416. Total energy = 960.6066 kcal/mol (960.0872 without restraints) Performing minimization step: 1417. Total energy = 960.3929 kcal/mol (959.8738 without restraints) Performing minimization step: 1418. Total energy = 960.1798 kcal/mol (959.6610 without restraints) Performing minimization step: 1419. Total energy = 959.9675 kcal/mol (959.4489 without restraints) Performing minimization step: 1420. Total energy = 959.7555 kcal/mol (959.2372 without restraints) Performing minimization step: 1421. Total energy = 959.5441 kcal/mol (959.0260 without restraints) Performing minimization step: 1422. Total energy = 959.3333 kcal/mol (958.8154 without restraints) Performing minimization step: 1423. Total energy = 959.1230 kcal/mol (958.6054 without restraints) Performing minimization step: 1424. Total energy = 958.9135 kcal/mol (958.3962 without restraints) Performing minimization step: 1425. Total energy = 958.7044 kcal/mol (958.1873 without restraints) Performing minimization step: 1426. Total energy = 958.4956 kcal/mol (957.9787 without restraints) Performing minimization step: 1427. Total energy = 958.2874 kcal/mol (957.7707 without restraints) Performing minimization step: 1428. Total energy = 958.0799 kcal/mol (957.5635 without restraints) Performing minimization step: 1429. Total energy = 957.8730 kcal/mol (957.3568 without restraints) Performing minimization step: 1430. Total energy = 957.6666 kcal/mol (957.1507 without restraints) Performing minimization step: 1431. Total energy = 957.4608 kcal/mol (956.9451 without restraints) Performing minimization step: 1432. Total energy = 957.2558 kcal/mol (956.7403 without restraints) Performing minimization step: 1433. Total energy = 957.0510 kcal/mol (956.5358 without restraints) Performing minimization step: 1434. Total energy = 956.8469 kcal/mol (956.3319 without restraints) Performing minimization step: 1435. Total energy = 956.6433 kcal/mol (956.1285 without restraints) Performing minimization step: 1436. Total energy = 956.4403 kcal/mol (955.9257 without restraints) Performing minimization step: 1437. Total energy = 956.2378 kcal/mol (955.7235 without restraints) Performing minimization step: 1438. Total energy = 956.0358 kcal/mol (955.5218 without restraints) Performing minimization step: 1439. Total energy = 955.8345 kcal/mol (955.3208 without restraints) Performing minimization step: 1440. Total energy = 955.6340 kcal/mol (955.1204 without restraints) Performing minimization step: 1441. Total energy = 955.4336 kcal/mol (954.9203 without restraints) Performing minimization step: 1442. Total energy = 955.2338 kcal/mol (954.7207 without restraints) Performing minimization step: 1443. Total energy = 955.0345 kcal/mol (954.5216 without restraints) Performing minimization step: 1444. Total energy = 954.8358 kcal/mol (954.3231 without restraints) Performing minimization step: 1445. Total energy = 954.6378 kcal/mol (954.1254 without restraints) Performing minimization step: 1446. Total energy = 954.4406 kcal/mol (953.9284 without restraints) Performing minimization step: 1447. Total energy = 954.2435 kcal/mol (953.7316 without restraints) Performing minimization step: 1448. Total energy = 954.0472 kcal/mol (953.5354 without restraints) Performing minimization step: 1449. Total energy = 953.8511 kcal/mol (953.3396 without restraints) Performing minimization step: 1450. Total energy = 953.6556 kcal/mol (953.1443 without restraints) Performing minimization step: 1451. Total energy = 953.4603 kcal/mol (952.9491 without restraints) Performing minimization step: 1452. Total energy = 953.2657 kcal/mol (952.7548 without restraints) Performing minimization step: 1453. Total energy = 953.0717 kcal/mol (952.5611 without restraints) Performing minimization step: 1454. Total energy = 952.8781 kcal/mol (952.3676 without restraints) Performing minimization step: 1455. Total energy = 952.6850 kcal/mol (952.1749 without restraints) Performing minimization step: 1456. Total energy = 952.4926 kcal/mol (951.9826 without restraints) Performing minimization step: 1457. Total energy = 952.3006 kcal/mol (951.7909 without restraints) Performing minimization step: 1458. Total energy = 952.1092 kcal/mol (951.5997 without restraints) Performing minimization step: 1459. Total energy = 951.9183 kcal/mol (951.4091 without restraints) Performing minimization step: 1460. Total energy = 951.7279 kcal/mol (951.2189 without restraints) Performing minimization step: 1461. Total energy = 951.5383 kcal/mol (951.0295 without restraints) Performing minimization step: 1462. Total energy = 951.3490 kcal/mol (950.8404 without restraints) Performing minimization step: 1463. Total energy = 951.1602 kcal/mol (950.6518 without restraints) Performing minimization step: 1464. Total energy = 950.9718 kcal/mol (950.4636 without restraints) Performing minimization step: 1465. Total energy = 950.7839 kcal/mol (950.2760 without restraints) Performing minimization step: 1466. Total energy = 950.5966 kcal/mol (950.0889 without restraints) Performing minimization step: 1467. Total energy = 950.4097 kcal/mol (949.9022 without restraints) Performing minimization step: 1468. Total energy = 950.2233 kcal/mol (949.7161 without restraints) Performing minimization step: 1469. Total energy = 950.0375 kcal/mol (949.5305 without restraints) Performing minimization step: 1470. Total energy = 949.8521 kcal/mol (949.3453 without restraints) Performing minimization step: 1471. Total energy = 949.6668 kcal/mol (949.1602 without restraints) Performing minimization step: 1472. Total energy = 949.4824 kcal/mol (948.9760 without restraints) Performing minimization step: 1473. Total energy = 949.2984 kcal/mol (948.7922 without restraints) Performing minimization step: 1474. Total energy = 949.1152 kcal/mol (948.6093 without restraints) Performing minimization step: 1475. Total energy = 948.9322 kcal/mol (948.4265 without restraints) Performing minimization step: 1476. Total energy = 948.7498 kcal/mol (948.2443 without restraints) Performing minimization step: 1477. Total energy = 948.5680 kcal/mol (948.0627 without restraints) Performing minimization step: 1478. Total energy = 948.3865 kcal/mol (947.8814 without restraints) Performing minimization step: 1479. Total energy = 948.2055 kcal/mol (947.7006 without restraints) Performing minimization step: 1480. Total energy = 948.0250 kcal/mol (947.5204 without restraints) Performing minimization step: 1481. Total energy = 947.8449 kcal/mol (947.3403 without restraints) Performing minimization step: 1482. Total energy = 947.6651 kcal/mol (947.1609 without restraints) Performing minimization step: 1483. Total energy = 947.4860 kcal/mol (946.9820 without restraints) Performing minimization step: 1484. Total energy = 947.3073 kcal/mol (946.8035 without restraints) Performing minimization step: 1485. Total energy = 947.1292 kcal/mol (946.6256 without restraints) Performing minimization step: 1486. Total energy = 946.9515 kcal/mol (946.4480 without restraints) Performing minimization step: 1487. Total energy = 946.7747 kcal/mol (946.2715 without restraints) Performing minimization step: 1488. Total energy = 946.5979 kcal/mol (946.0949 without restraints) Performing minimization step: 1489. Total energy = 946.4216 kcal/mol (945.9188 without restraints) Performing minimization step: 1490. Total energy = 946.2460 kcal/mol (945.7434 without restraints) Performing minimization step: 1491. Total energy = 946.0705 kcal/mol (945.5681 without restraints) Performing minimization step: 1492. Total energy = 945.8956 kcal/mol (945.3934 without restraints) Performing minimization step: 1493. Total energy = 945.7211 kcal/mol (945.2192 without restraints) Performing minimization step: 1494. Total energy = 945.5471 kcal/mol (945.0453 without restraints) Performing minimization step: 1495. Total energy = 945.3735 kcal/mol (944.8720 without restraints) Performing minimization step: 1496. Total energy = 945.2004 kcal/mol (944.6991 without restraints) Performing minimization step: 1497. Total energy = 945.0278 kcal/mol (944.5266 without restraints) Performing minimization step: 1498. Total energy = 944.8556 kcal/mol (944.3547 without restraints) Performing minimization step: 1499. Total energy = 944.6839 kcal/mol (944.1832 without restraints) Performing minimization step: 1500. Total energy = 944.5129 kcal/mol (944.0124 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 944.3419 kcal/mol (943.8416 without restraints) Performing minimization step: 1502. Total energy = 944.1716 kcal/mol (943.6714 without restraints) Performing minimization step: 1503. Total energy = 944.0016 kcal/mol (943.5017 without restraints) Performing minimization step: 1504. Total energy = 943.8321 kcal/mol (943.3324 without restraints) Performing minimization step: 1505. Total energy = 943.6630 kcal/mol (943.1635 without restraints) Performing minimization step: 1506. Total energy = 943.4944 kcal/mol (942.9950 without restraints) Performing minimization step: 1507. Total energy = 943.3261 kcal/mol (942.8270 without restraints) Performing minimization step: 1508. Total energy = 943.1585 kcal/mol (942.6596 without restraints) Performing minimization step: 1509. Total energy = 942.9912 kcal/mol (942.4925 without restraints) Performing minimization step: 1510. Total energy = 942.8242 kcal/mol (942.3257 without restraints) Performing minimization step: 1511. Total energy = 942.6574 kcal/mol (942.1590 without restraints) Performing minimization step: 1512. Total energy = 942.4913 kcal/mol (941.9932 without restraints) Performing minimization step: 1513. Total energy = 942.3257 kcal/mol (941.8277 without restraints) Performing minimization step: 1514. Total energy = 942.1604 kcal/mol (941.6625 without restraints) Performing minimization step: 1515. Total energy = 941.9955 kcal/mol (941.4979 without restraints) Performing minimization step: 1516. Total energy = 941.8311 kcal/mol (941.3338 without restraints) Performing minimization step: 1517. Total energy = 941.6673 kcal/mol (941.1702 without restraints) Performing minimization step: 1518. Total energy = 941.5039 kcal/mol (941.0069 without restraints) Performing minimization step: 1519. Total energy = 941.3408 kcal/mol (940.8440 without restraints) Performing minimization step: 1520. Total energy = 941.1785 kcal/mol (940.6819 without restraints) Performing minimization step: 1521. Total energy = 941.0163 kcal/mol (940.5199 without restraints) Performing minimization step: 1522. Total energy = 940.8544 kcal/mol (940.3582 without restraints) Performing minimization step: 1523. Total energy = 940.6932 kcal/mol (940.1972 without restraints) Performing minimization step: 1524. Total energy = 940.5322 kcal/mol (940.0364 without restraints) Performing minimization step: 1525. Total energy = 940.3719 kcal/mol (939.8762 without restraints) Performing minimization step: 1526. Total energy = 940.2117 kcal/mol (939.7163 without restraints) Performing minimization step: 1527. Total energy = 940.0519 kcal/mol (939.5566 without restraints) Performing minimization step: 1528. Total energy = 939.8925 kcal/mol (939.3974 without restraints) Performing minimization step: 1529. Total energy = 939.7335 kcal/mol (939.2386 without restraints) Performing minimization step: 1530. Total energy = 939.5747 kcal/mol (939.0800 without restraints) Performing minimization step: 1531. Total energy = 939.4166 kcal/mol (938.9223 without restraints) Performing minimization step: 1532. Total energy = 939.2590 kcal/mol (938.7647 without restraints) Performing minimization step: 1533. Total energy = 939.1018 kcal/mol (938.6077 without restraints) Performing minimization step: 1534. Total energy = 938.9448 kcal/mol (938.4509 without restraints) Performing minimization step: 1535. Total energy = 938.7882 kcal/mol (938.2945 without restraints) Performing minimization step: 1536. Total energy = 938.6320 kcal/mol (938.1384 without restraints) Performing minimization step: 1537. Total energy = 938.4764 kcal/mol (937.9830 without restraints) Performing minimization step: 1538. Total energy = 938.3210 kcal/mol (937.8278 without restraints) Performing minimization step: 1539. Total energy = 938.1657 kcal/mol (937.6727 without restraints) Performing minimization step: 1540. Total energy = 938.0113 kcal/mol (937.5184 without restraints) Performing minimization step: 1541. Total energy = 937.8569 kcal/mol (937.3642 without restraints) Performing minimization step: 1542. Total energy = 937.7033 kcal/mol (937.2108 without restraints) Performing minimization step: 1543. Total energy = 937.5496 kcal/mol (937.0572 without restraints) Performing minimization step: 1544. Total energy = 937.3964 kcal/mol (936.9043 without restraints) Performing minimization step: 1545. Total energy = 937.2436 kcal/mol (936.7517 without restraints) Performing minimization step: 1546. Total energy = 937.0913 kcal/mol (936.5995 without restraints) Performing minimization step: 1547. Total energy = 936.9396 kcal/mol (936.4481 without restraints) Performing minimization step: 1548. Total energy = 936.7880 kcal/mol (936.2966 without restraints) Performing minimization step: 1549. Total energy = 936.6370 kcal/mol (936.1457 without restraints) Performing minimization step: 1550. Total energy = 936.4861 kcal/mol (935.9951 without restraints) Performing minimization step: 1551. Total energy = 936.3357 kcal/mol (935.8449 without restraints) Performing minimization step: 1552. Total energy = 936.1857 kcal/mol (935.6950 without restraints) Performing minimization step: 1553. Total energy = 936.0359 kcal/mol (935.5454 without restraints) Performing minimization step: 1554. Total energy = 935.8865 kcal/mol (935.3962 without restraints) Performing minimization step: 1555. Total energy = 935.7375 kcal/mol (935.2474 without restraints) Performing minimization step: 1556. Total energy = 935.5889 kcal/mol (935.0989 without restraints) Performing minimization step: 1557. Total energy = 935.4406 kcal/mol (934.9508 without restraints) Performing minimization step: 1558. Total energy = 935.2925 kcal/mol (934.8028 without restraints) Performing minimization step: 1559. Total energy = 935.1449 kcal/mol (934.6554 without restraints) Performing minimization step: 1560. Total energy = 934.9977 kcal/mol (934.5084 without restraints) Performing minimization step: 1561. Total energy = 934.8508 kcal/mol (934.3617 without restraints) Performing minimization step: 1562. Total energy = 934.7043 kcal/mol (934.2154 without restraints) Performing minimization step: 1563. Total energy = 934.5582 kcal/mol (934.0694 without restraints) Performing minimization step: 1564. Total energy = 934.4124 kcal/mol (933.9238 without restraints) Performing minimization step: 1565. Total energy = 934.2670 kcal/mol (933.7786 without restraints) Performing minimization step: 1566. Total energy = 934.1220 kcal/mol (933.6336 without restraints) Performing minimization step: 1567. Total energy = 933.9768 kcal/mol (933.4887 without restraints) Performing minimization step: 1568. Total energy = 933.8325 kcal/mol (933.3445 without restraints) Performing minimization step: 1569. Total energy = 933.6885 kcal/mol (933.2007 without restraints) Performing minimization step: 1570. Total energy = 933.5448 kcal/mol (933.0572 without restraints) Performing minimization step: 1571. Total energy = 933.4016 kcal/mol (932.9141 without restraints) Performing minimization step: 1572. Total energy = 933.2588 kcal/mol (932.7715 without restraints) Performing minimization step: 1573. Total energy = 933.1161 kcal/mol (932.6290 without restraints) Performing minimization step: 1574. Total energy = 932.9736 kcal/mol (932.4867 without restraints) Performing minimization step: 1575. Total energy = 932.8317 kcal/mol (932.3448 without restraints) Performing minimization step: 1576. Total energy = 932.6899 kcal/mol (932.2033 without restraints) Performing minimization step: 1577. Total energy = 932.5486 kcal/mol (932.0621 without restraints) Performing minimization step: 1578. Total energy = 932.4076 kcal/mol (931.9213 without restraints) Performing minimization step: 1579. Total energy = 932.2670 kcal/mol (931.7808 without restraints) Performing minimization step: 1580. Total energy = 932.1268 kcal/mol (931.6408 without restraints) Performing minimization step: 1581. Total energy = 931.9868 kcal/mol (931.5009 without restraints) Performing minimization step: 1582. Total energy = 931.8469 kcal/mol (931.3611 without restraints) Performing minimization step: 1583. Total energy = 931.7072 kcal/mol (931.2216 without restraints) Performing minimization step: 1584. Total energy = 931.5683 kcal/mol (931.0830 without restraints) Performing minimization step: 1585. Total energy = 931.4295 kcal/mol (930.9443 without restraints) Performing minimization step: 1586. Total energy = 931.2912 kcal/mol (930.8062 without restraints) Performing minimization step: 1587. Total energy = 931.1532 kcal/mol (930.6683 without restraints) Performing minimization step: 1588. Total energy = 931.0155 kcal/mol (930.5308 without restraints) Performing minimization step: 1589. Total energy = 930.8779 kcal/mol (930.3933 without restraints) Performing minimization step: 1590. Total energy = 930.7408 kcal/mol (930.2564 without restraints) Performing minimization step: 1591. Total energy = 930.6040 kcal/mol (930.1198 without restraints) Performing minimization step: 1592. Total energy = 930.4676 kcal/mol (929.9835 without restraints) Performing minimization step: 1593. Total energy = 930.3313 kcal/mol (929.8474 without restraints) Performing minimization step: 1594. Total energy = 930.1956 kcal/mol (929.7118 without restraints) Performing minimization step: 1595. Total energy = 930.0601 kcal/mol (929.5764 without restraints) Performing minimization step: 1596. Total energy = 929.9248 kcal/mol (929.4413 without restraints) Performing minimization step: 1597. Total energy = 929.7897 kcal/mol (929.3064 without restraints) Performing minimization step: 1598. Total energy = 929.6552 kcal/mol (929.1720 without restraints) Performing minimization step: 1599. Total energy = 929.5212 kcal/mol (929.0381 without restraints) Performing minimization step: 1600. Total energy = 929.3871 kcal/mol (928.9042 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 929.2535 kcal/mol (928.7708 without restraints) Performing minimization step: 1602. Total energy = 929.1199 kcal/mol (928.6373 without restraints) Performing minimization step: 1603. Total energy = 928.9869 kcal/mol (928.5045 without restraints) Performing minimization step: 1604. Total energy = 928.8542 kcal/mol (928.3719 without restraints) Performing minimization step: 1605. Total energy = 928.7218 kcal/mol (928.2396 without restraints) Performing minimization step: 1606. Total energy = 928.5897 kcal/mol (928.1077 without restraints) Performing minimization step: 1607. Total energy = 928.4578 kcal/mol (927.9760 without restraints) Performing minimization step: 1608. Total energy = 928.3264 kcal/mol (927.8448 without restraints) Performing minimization step: 1609. Total energy = 928.1953 kcal/mol (927.7138 without restraints) Performing minimization step: 1610. Total energy = 928.0644 kcal/mol (927.5830 without restraints) Performing minimization step: 1611. Total energy = 927.9339 kcal/mol (927.4527 without restraints) Performing minimization step: 1612. Total energy = 927.8037 kcal/mol (927.3227 without restraints) Performing minimization step: 1613. Total energy = 927.6738 kcal/mol (927.1928 without restraints) Performing minimization step: 1614. Total energy = 927.5442 kcal/mol (927.0634 without restraints) Performing minimization step: 1615. Total energy = 927.4148 kcal/mol (926.9341 without restraints) Performing minimization step: 1616. Total energy = 927.2854 kcal/mol (926.8049 without restraints) Performing minimization step: 1617. Total energy = 927.1565 kcal/mol (926.6761 without restraints) Performing minimization step: 1618. Total energy = 927.0281 kcal/mol (926.5479 without restraints) Performing minimization step: 1619. Total energy = 926.8998 kcal/mol (926.4197 without restraints) Performing minimization step: 1620. Total energy = 926.7718 kcal/mol (926.2918 without restraints) Performing minimization step: 1621. Total energy = 926.6440 kcal/mol (926.1642 without restraints) Performing minimization step: 1622. Total energy = 926.5167 kcal/mol (926.0370 without restraints) Performing minimization step: 1623. Total energy = 926.3895 kcal/mol (925.9100 without restraints) Performing minimization step: 1624. Total energy = 926.2627 kcal/mol (925.7833 without restraints) Performing minimization step: 1625. Total energy = 926.1362 kcal/mol (925.6569 without restraints) Performing minimization step: 1626. Total energy = 926.0098 kcal/mol (925.5307 without restraints) Performing minimization step: 1627. Total energy = 925.8838 kcal/mol (925.4048 without restraints) Performing minimization step: 1628. Total energy = 925.7580 kcal/mol (925.2792 without restraints) Performing minimization step: 1629. Total energy = 925.6323 kcal/mol (925.1536 without restraints) Performing minimization step: 1630. Total energy = 925.5066 kcal/mol (925.0280 without restraints) Performing minimization step: 1631. Total energy = 925.3816 kcal/mol (924.9032 without restraints) Performing minimization step: 1632. Total energy = 925.2569 kcal/mol (924.7786 without restraints) Performing minimization step: 1633. Total energy = 925.1324 kcal/mol (924.6542 without restraints) Performing minimization step: 1634. Total energy = 925.0083 kcal/mol (924.5302 without restraints) Performing minimization step: 1635. Total energy = 924.8844 kcal/mol (924.4065 without restraints) Performing minimization step: 1636. Total energy = 924.7606 kcal/mol (924.2828 without restraints) Performing minimization step: 1637. Total energy = 924.6371 kcal/mol (924.1594 without restraints) Performing minimization step: 1638. Total energy = 924.5139 kcal/mol (924.0364 without restraints) Performing minimization step: 1639. Total energy = 924.3910 kcal/mol (923.9136 without restraints) Performing minimization step: 1640. Total energy = 924.2684 kcal/mol (923.7912 without restraints) Performing minimization step: 1641. Total energy = 924.1461 kcal/mol (923.6690 without restraints) Performing minimization step: 1642. Total energy = 924.0239 kcal/mol (923.5468 without restraints) Performing minimization step: 1643. Total energy = 923.9019 kcal/mol (923.4251 without restraints) Performing minimization step: 1644. Total energy = 923.7804 kcal/mol (923.3036 without restraints) Performing minimization step: 1645. Total energy = 923.6591 kcal/mol (923.1825 without restraints) Performing minimization step: 1646. Total energy = 923.5381 kcal/mol (923.0616 without restraints) Performing minimization step: 1647. Total energy = 923.4173 kcal/mol (922.9409 without restraints) Performing minimization step: 1648. Total energy = 923.2967 kcal/mol (922.8205 without restraints) Performing minimization step: 1649. Total energy = 923.1764 kcal/mol (922.7003 without restraints) Performing minimization step: 1650. Total energy = 923.0562 kcal/mol (922.5802 without restraints) Performing minimization step: 1651. Total energy = 922.9364 kcal/mol (922.4606 without restraints) Performing minimization step: 1652. Total energy = 922.8169 kcal/mol (922.3412 without restraints) Performing minimization step: 1653. Total energy = 922.6976 kcal/mol (922.2220 without restraints) Performing minimization step: 1654. Total energy = 922.5785 kcal/mol (922.1031 without restraints) Performing minimization step: 1655. Total energy = 922.4596 kcal/mol (921.9844 without restraints) Performing minimization step: 1656. Total energy = 922.3412 kcal/mol (921.8660 without restraints) Performing minimization step: 1657. Total energy = 922.2229 kcal/mol (921.7478 without restraints) Performing minimization step: 1658. Total energy = 922.1048 kcal/mol (921.6298 without restraints) Performing minimization step: 1659. Total energy = 921.9870 kcal/mol (921.5121 without restraints) Performing minimization step: 1660. Total energy = 921.8694 kcal/mol (921.3947 without restraints) Performing minimization step: 1661. Total energy = 921.7520 kcal/mol (921.2774 without restraints) Performing minimization step: 1662. Total energy = 921.6349 kcal/mol (921.1604 without restraints) Performing minimization step: 1663. Total energy = 921.5180 kcal/mol (921.0437 without restraints) Performing minimization step: 1664. Total energy = 921.4014 kcal/mol (920.9272 without restraints) Performing minimization step: 1665. Total energy = 921.2848 kcal/mol (920.8106 without restraints) Performing minimization step: 1666. Total energy = 921.1686 kcal/mol (920.6946 without restraints) Performing minimization step: 1667. Total energy = 921.0527 kcal/mol (920.5788 without restraints) Performing minimization step: 1668. Total energy = 920.9374 kcal/mol (920.4636 without restraints) Performing minimization step: 1669. Total energy = 920.8219 kcal/mol (920.3483 without restraints) Performing minimization step: 1670. Total energy = 920.7068 kcal/mol (920.2332 without restraints) Performing minimization step: 1671. Total energy = 920.5916 kcal/mol (920.1181 without restraints) Performing minimization step: 1672. Total energy = 920.4768 kcal/mol (920.0035 without restraints) Performing minimization step: 1673. Total energy = 920.3622 kcal/mol (919.8891 without restraints) Performing minimization step: 1674. Total energy = 920.2481 kcal/mol (919.7753 without restraints) Performing minimization step: 1675. Total energy = 920.1343 kcal/mol (919.6613 without restraints) Performing minimization step: 1676. Total energy = 920.0204 kcal/mol (919.5475 without restraints) Performing minimization step: 1677. Total energy = 919.9067 kcal/mol (919.4340 without restraints) Performing minimization step: 1678. Total energy = 919.7933 kcal/mol (919.3207 without restraints) Performing minimization step: 1679. Total energy = 919.6800 kcal/mol (919.2076 without restraints) Performing minimization step: 1680. Total energy = 919.5672 kcal/mol (919.0950 without restraints) Performing minimization step: 1681. Total energy = 919.4546 kcal/mol (918.9823 without restraints) Performing minimization step: 1682. Total energy = 919.3421 kcal/mol (918.8701 without restraints) Performing minimization step: 1683. Total energy = 919.2299 kcal/mol (918.7578 without restraints) Performing minimization step: 1684. Total energy = 919.1178 kcal/mol (918.6459 without restraints) Performing minimization step: 1685. Total energy = 919.0057 kcal/mol (918.5339 without restraints) Performing minimization step: 1686. Total energy = 918.8943 kcal/mol (918.4229 without restraints) Performing minimization step: 1687. Total energy = 918.7834 kcal/mol (918.3118 without restraints) Performing minimization step: 1688. Total energy = 918.6721 kcal/mol (918.2007 without restraints) Performing minimization step: 1689. Total energy = 918.5611 kcal/mol (918.0898 without restraints) Performing minimization step: 1690. Total energy = 918.4503 kcal/mol (917.9791 without restraints) Performing minimization step: 1691. Total energy = 918.3395 kcal/mol (917.8684 without restraints) Performing minimization step: 1692. Total energy = 918.2291 kcal/mol (917.7581 without restraints) Performing minimization step: 1693. Total energy = 918.1190 kcal/mol (917.6480 without restraints) Performing minimization step: 1694. Total energy = 918.0092 kcal/mol (917.5384 without restraints) Performing minimization step: 1695. Total energy = 917.8994 kcal/mol (917.4287 without restraints) Performing minimization step: 1696. Total energy = 917.7899 kcal/mol (917.3193 without restraints) Performing minimization step: 1697. Total energy = 917.6806 kcal/mol (917.2101 without restraints) Performing minimization step: 1698. Total energy = 917.5714 kcal/mol (917.1010 without restraints) Performing minimization step: 1699. Total energy = 917.4625 kcal/mol (916.9922 without restraints) Performing minimization step: 1700. Total energy = 917.3538 kcal/mol (916.8836 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 917.2453 kcal/mol (916.7752 without restraints) Performing minimization step: 1702. Total energy = 917.1370 kcal/mol (916.6671 without restraints) Performing minimization step: 1703. Total energy = 917.0290 kcal/mol (916.5591 without restraints) Performing minimization step: 1704. Total energy = 916.9211 kcal/mol (916.4513 without restraints) Performing minimization step: 1705. Total energy = 916.8134 kcal/mol (916.3437 without restraints) Performing minimization step: 1706. Total energy = 916.7060 kcal/mol (916.2365 without restraints) Performing minimization step: 1707. Total energy = 916.5987 kcal/mol (916.1292 without restraints) Performing minimization step: 1708. Total energy = 916.4914 kcal/mol (916.0220 without restraints) Performing minimization step: 1709. Total energy = 916.3844 kcal/mol (915.9150 without restraints) Performing minimization step: 1710. Total energy = 916.2773 kcal/mol (915.8082 without restraints) Performing minimization step: 1711. Total energy = 916.1708 kcal/mol (915.7017 without restraints) Performing minimization step: 1712. Total energy = 916.0645 kcal/mol (915.5955 without restraints) Performing minimization step: 1713. Total energy = 915.9584 kcal/mol (915.4895 without restraints) Performing minimization step: 1714. Total energy = 915.8524 kcal/mol (915.3837 without restraints) Performing minimization step: 1715. Total energy = 915.7467 kcal/mol (915.2780 without restraints) Performing minimization step: 1716. Total energy = 915.6411 kcal/mol (915.1726 without restraints) Performing minimization step: 1717. Total energy = 915.5358 kcal/mol (915.0673 without restraints) Performing minimization step: 1718. Total energy = 915.4304 kcal/mol (914.9620 without restraints) Performing minimization step: 1719. Total energy = 915.3257 kcal/mol (914.8574 without restraints) Performing minimization step: 1720. Total energy = 915.2209 kcal/mol (914.7527 without restraints) Performing minimization step: 1721. Total energy = 915.1160 kcal/mol (914.6480 without restraints) Performing minimization step: 1722. Total energy = 915.0117 kcal/mol (914.5437 without restraints) Performing minimization step: 1723. Total energy = 914.9074 kcal/mol (914.4396 without restraints) Performing minimization step: 1724. Total energy = 914.8034 kcal/mol (914.3356 without restraints) Performing minimization step: 1725. Total energy = 914.6996 kcal/mol (914.2319 without restraints) Performing minimization step: 1726. Total energy = 914.5957 kcal/mol (914.1281 without restraints) Performing minimization step: 1727. Total energy = 914.4922 kcal/mol (914.0247 without restraints) Performing minimization step: 1728. Total energy = 914.3889 kcal/mol (913.9215 without restraints) Performing minimization step: 1729. Total energy = 914.2857 kcal/mol (913.8184 without restraints) Performing minimization step: 1730. Total energy = 914.1827 kcal/mol (913.7155 without restraints) Performing minimization step: 1731. Total energy = 914.0801 kcal/mol (913.6130 without restraints) Performing minimization step: 1732. Total energy = 913.9778 kcal/mol (913.5108 without restraints) Performing minimization step: 1733. Total energy = 913.8754 kcal/mol (913.4085 without restraints) Performing minimization step: 1734. Total energy = 913.7732 kcal/mol (913.3063 without restraints) Performing minimization step: 1735. Total energy = 913.6709 kcal/mol (913.2041 without restraints) Performing minimization step: 1736. Total energy = 913.5692 kcal/mol (913.1026 without restraints) Performing minimization step: 1737. Total energy = 913.4673 kcal/mol (913.0006 without restraints) Performing minimization step: 1738. Total energy = 913.3656 kcal/mol (912.8991 without restraints) Performing minimization step: 1739. Total energy = 913.2641 kcal/mol (912.7977 without restraints) Performing minimization step: 1740. Total energy = 913.1629 kcal/mol (912.6966 without restraints) Performing minimization step: 1741. Total energy = 913.0621 kcal/mol (912.5959 without restraints) Performing minimization step: 1742. Total energy = 912.9613 kcal/mol (912.4952 without restraints) Performing minimization step: 1743. Total energy = 912.8606 kcal/mol (912.3946 without restraints) Performing minimization step: 1744. Total energy = 912.7604 kcal/mol (912.2945 without restraints) Performing minimization step: 1745. Total energy = 912.6601 kcal/mol (912.1943 without restraints) Performing minimization step: 1746. Total energy = 912.5601 kcal/mol (912.0944 without restraints) Performing minimization step: 1747. Total energy = 912.4602 kcal/mol (911.9946 without restraints) Performing minimization step: 1748. Total energy = 912.3604 kcal/mol (911.8948 without restraints) Performing minimization step: 1749. Total energy = 912.2608 kcal/mol (911.7953 without restraints) Performing minimization step: 1750. Total energy = 912.1613 kcal/mol (911.6959 without restraints) Performing minimization step: 1751. Total energy = 912.0620 kcal/mol (911.5967 without restraints) Performing minimization step: 1752. Total energy = 911.9629 kcal/mol (911.4977 without restraints) Performing minimization step: 1753. Total energy = 911.8640 kcal/mol (911.3988 without restraints) Performing minimization step: 1754. Total energy = 911.7652 kcal/mol (911.3001 without restraints) Performing minimization step: 1755. Total energy = 911.6668 kcal/mol (911.2018 without restraints) Performing minimization step: 1756. Total energy = 911.5683 kcal/mol (911.1034 without restraints) Performing minimization step: 1757. Total energy = 911.4700 kcal/mol (911.0052 without restraints) Performing minimization step: 1758. Total energy = 911.3719 kcal/mol (910.9072 without restraints) Performing minimization step: 1759. Total energy = 911.2742 kcal/mol (910.8096 without restraints) Performing minimization step: 1760. Total energy = 911.1766 kcal/mol (910.7121 without restraints) Performing minimization step: 1761. Total energy = 911.0790 kcal/mol (910.6146 without restraints) Performing minimization step: 1762. Total energy = 910.9816 kcal/mol (910.5172 without restraints) Performing minimization step: 1763. Total energy = 910.8839 kcal/mol (910.4196 without restraints) Performing minimization step: 1764. Total energy = 910.7868 kcal/mol (910.3226 without restraints) Performing minimization step: 1765. Total energy = 910.6898 kcal/mol (910.2257 without restraints) Performing minimization step: 1766. Total energy = 910.5927 kcal/mol (910.1287 without restraints) Performing minimization step: 1767. Total energy = 910.4961 kcal/mol (910.0321 without restraints) Performing minimization step: 1768. Total energy = 910.3995 kcal/mol (909.9356 without restraints) Performing minimization step: 1769. Total energy = 910.3032 kcal/mol (909.8394 without restraints) Performing minimization step: 1770. Total energy = 910.2070 kcal/mol (909.7432 without restraints) Performing minimization step: 1771. Total energy = 910.1109 kcal/mol (909.6472 without restraints) Performing minimization step: 1772. Total energy = 910.0150 kcal/mol (909.5514 without restraints) Performing minimization step: 1773. Total energy = 909.9189 kcal/mol (909.4554 without restraints) Performing minimization step: 1774. Total energy = 909.8233 kcal/mol (909.3599 without restraints) Performing minimization step: 1775. Total energy = 909.7283 kcal/mol (909.2649 without restraints) Performing minimization step: 1776. Total energy = 909.6330 kcal/mol (909.1697 without restraints) Performing minimization step: 1777. Total energy = 909.5378 kcal/mol (909.0746 without restraints) Performing minimization step: 1778. Total energy = 909.4429 kcal/mol (908.9798 without restraints) Performing minimization step: 1779. Total energy = 909.3480 kcal/mol (908.8850 without restraints) Performing minimization step: 1780. Total energy = 909.2533 kcal/mol (908.7904 without restraints) Performing minimization step: 1781. Total energy = 909.1589 kcal/mol (908.6960 without restraints) Performing minimization step: 1782. Total energy = 909.0645 kcal/mol (908.6017 without restraints) Performing minimization step: 1783. Total energy = 908.9703 kcal/mol (908.5076 without restraints) Performing minimization step: 1784. Total energy = 908.8760 kcal/mol (908.4133 without restraints) Performing minimization step: 1785. Total energy = 908.7821 kcal/mol (908.3196 without restraints) Performing minimization step: 1786. Total energy = 908.6883 kcal/mol (908.2258 without restraints) Performing minimization step: 1787. Total energy = 908.5947 kcal/mol (908.1322 without restraints) Performing minimization step: 1788. Total energy = 908.5011 kcal/mol (908.0388 without restraints) Performing minimization step: 1789. Total energy = 908.4076 kcal/mol (907.9455 without restraints) Performing minimization step: 1790. Total energy = 908.3145 kcal/mol (907.8523 without restraints) Performing minimization step: 1791. Total energy = 908.2214 kcal/mol (907.7593 without restraints) Performing minimization step: 1792. Total energy = 908.1285 kcal/mol (907.6664 without restraints) Performing minimization step: 1793. Total energy = 908.0356 kcal/mol (907.5736 without restraints) Performing minimization step: 1794. Total energy = 907.9433 kcal/mol (907.4814 without restraints) Performing minimization step: 1795. Total energy = 907.8509 kcal/mol (907.3892 without restraints) Performing minimization step: 1796. Total energy = 907.7586 kcal/mol (907.2968 without restraints) Performing minimization step: 1797. Total energy = 907.6666 kcal/mol (907.2049 without restraints) Performing minimization step: 1798. Total energy = 907.5747 kcal/mol (907.1131 without restraints) Performing minimization step: 1799. Total energy = 907.4827 kcal/mol (907.0212 without restraints) Performing minimization step: 1800. Total energy = 907.3909 kcal/mol (906.9294 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 907.2992 kcal/mol (906.8378 without restraints) Performing minimization step: 1802. Total energy = 907.2077 kcal/mol (906.7463 without restraints) Performing minimization step: 1803. Total energy = 907.1167 kcal/mol (906.6556 without restraints) Performing minimization step: 1804. Total energy = 907.0256 kcal/mol (906.5644 without restraints) Performing minimization step: 1805. Total energy = 906.9344 kcal/mol (906.4733 without restraints) Performing minimization step: 1806. Total energy = 906.8432 kcal/mol (906.3821 without restraints) Performing minimization step: 1807. Total energy = 906.7522 kcal/mol (906.2910 without restraints) Performing minimization step: 1808. Total energy = 906.6613 kcal/mol (906.2004 without restraints) Performing minimization step: 1809. Total energy = 906.5708 kcal/mol (906.1099 without restraints) Performing minimization step: 1810. Total energy = 906.4803 kcal/mol (906.0195 without restraints) Performing minimization step: 1811. Total energy = 906.3899 kcal/mol (905.9292 without restraints) Performing minimization step: 1812. Total energy = 906.2998 kcal/mol (905.8391 without restraints) Performing minimization step: 1813. Total energy = 906.2095 kcal/mol (905.7489 without restraints) Performing minimization step: 1814. Total energy = 906.1194 kcal/mol (905.6589 without restraints) Performing minimization step: 1815. Total energy = 906.0297 kcal/mol (905.5692 without restraints) Performing minimization step: 1816. Total energy = 905.9400 kcal/mol (905.4796 without restraints) Performing minimization step: 1817. Total energy = 905.8505 kcal/mol (905.3901 without restraints) Performing minimization step: 1818. Total energy = 905.7611 kcal/mol (905.3008 without restraints) Performing minimization step: 1819. Total energy = 905.6716 kcal/mol (905.2114 without restraints) Performing minimization step: 1820. Total energy = 905.5824 kcal/mol (905.1222 without restraints) Performing minimization step: 1821. Total energy = 905.4933 kcal/mol (905.0332 without restraints) Performing minimization step: 1822. Total energy = 905.4044 kcal/mol (904.9444 without restraints) Performing minimization step: 1823. Total energy = 905.3157 kcal/mol (904.8558 without restraints) Performing minimization step: 1824. Total energy = 905.2271 kcal/mol (904.7672 without restraints) Performing minimization step: 1825. Total energy = 905.1387 kcal/mol (904.6789 without restraints) Performing minimization step: 1826. Total energy = 905.0503 kcal/mol (904.5905 without restraints) Performing minimization step: 1827. Total energy = 904.9621 kcal/mol (904.5024 without restraints) Performing minimization step: 1828. Total energy = 904.8740 kcal/mol (904.4143 without restraints) Performing minimization step: 1829. Total energy = 904.7860 kcal/mol (904.3264 without restraints) Performing minimization step: 1830. Total energy = 904.6981 kcal/mol (904.2386 without restraints) Performing minimization step: 1831. Total energy = 904.6106 kcal/mol (904.1511 without restraints) Performing minimization step: 1832. Total energy = 904.5230 kcal/mol (904.0636 without restraints) Performing minimization step: 1833. Total energy = 904.4354 kcal/mol (903.9760 without restraints) Performing minimization step: 1834. Total energy = 904.3480 kcal/mol (903.8888 without restraints) Performing minimization step: 1835. Total energy = 904.2606 kcal/mol (903.8014 without restraints) Performing minimization step: 1836. Total energy = 904.1733 kcal/mol (903.7141 without restraints) Performing minimization step: 1837. Total energy = 904.0863 kcal/mol (903.6272 without restraints) Performing minimization step: 1838. Total energy = 903.9994 kcal/mol (903.5404 without restraints) Performing minimization step: 1839. Total energy = 903.9127 kcal/mol (903.4538 without restraints) Performing minimization step: 1840. Total energy = 903.8261 kcal/mol (903.3672 without restraints) Performing minimization step: 1841. Total energy = 903.7397 kcal/mol (903.2810 without restraints) Performing minimization step: 1842. Total energy = 903.6535 kcal/mol (903.1947 without restraints) Performing minimization step: 1843. Total energy = 903.5673 kcal/mol (903.1085 without restraints) Performing minimization step: 1844. Total energy = 903.4813 kcal/mol (903.0227 without restraints) Performing minimization step: 1845. Total energy = 903.3954 kcal/mol (902.9368 without restraints) Performing minimization step: 1846. Total energy = 903.3093 kcal/mol (902.8507 without restraints) Performing minimization step: 1847. Total energy = 903.2235 kcal/mol (902.7650 without restraints) Performing minimization step: 1848. Total energy = 903.1380 kcal/mol (902.6796 without restraints) Performing minimization step: 1849. Total energy = 903.0527 kcal/mol (902.5943 without restraints) Performing minimization step: 1850. Total energy = 902.9673 kcal/mol (902.5090 without restraints) Performing minimization step: 1851. Total energy = 902.8817 kcal/mol (902.4235 without restraints) Performing minimization step: 1852. Total energy = 902.7966 kcal/mol (902.3384 without restraints) Performing minimization step: 1853. Total energy = 902.7115 kcal/mol (902.2534 without restraints) Performing minimization step: 1854. Total energy = 902.6268 kcal/mol (902.1687 without restraints) Performing minimization step: 1855. Total energy = 902.5417 kcal/mol (902.0837 without restraints) Performing minimization step: 1856. Total energy = 902.4569 kcal/mol (901.9988 without restraints) Performing minimization step: 1857. Total energy = 902.3722 kcal/mol (901.9143 without restraints) Performing minimization step: 1858. Total energy = 902.2877 kcal/mol (901.8299 without restraints) Performing minimization step: 1859. Total energy = 902.2035 kcal/mol (901.7457 without restraints) Performing minimization step: 1860. Total energy = 902.1195 kcal/mol (901.6617 without restraints) Performing minimization step: 1861. Total energy = 902.0356 kcal/mol (901.5779 without restraints) Performing minimization step: 1862. Total energy = 901.9514 kcal/mol (901.4937 without restraints) Performing minimization step: 1863. Total energy = 901.8675 kcal/mol (901.4100 without restraints) Performing minimization step: 1864. Total energy = 901.7838 kcal/mol (901.3263 without restraints) Performing minimization step: 1865. Total energy = 901.7001 kcal/mol (901.2426 without restraints) Performing minimization step: 1866. Total energy = 901.6163 kcal/mol (901.1589 without restraints) Performing minimization step: 1867. Total energy = 901.5328 kcal/mol (901.0754 without restraints) Performing minimization step: 1868. Total energy = 901.4494 kcal/mol (900.9921 without restraints) Performing minimization step: 1869. Total energy = 901.3663 kcal/mol (900.9091 without restraints) Performing minimization step: 1870. Total energy = 901.2832 kcal/mol (900.8260 without restraints) Performing minimization step: 1871. Total energy = 901.2001 kcal/mol (900.7430 without restraints) Performing minimization step: 1872. Total energy = 901.1175 kcal/mol (900.6604 without restraints) Performing minimization step: 1873. Total energy = 901.0349 kcal/mol (900.5779 without restraints) Performing minimization step: 1874. Total energy = 900.9520 kcal/mol (900.4950 without restraints) Performing minimization step: 1875. Total energy = 900.8695 kcal/mol (900.4125 without restraints) Performing minimization step: 1876. Total energy = 900.7868 kcal/mol (900.3299 without restraints) Performing minimization step: 1877. Total energy = 900.7044 kcal/mol (900.2475 without restraints) Performing minimization step: 1878. Total energy = 900.6222 kcal/mol (900.1654 without restraints) Performing minimization step: 1879. Total energy = 900.5400 kcal/mol (900.0832 without restraints) Performing minimization step: 1880. Total energy = 900.4579 kcal/mol (900.0012 without restraints) Performing minimization step: 1881. Total energy = 900.3759 kcal/mol (899.9192 without restraints) Performing minimization step: 1882. Total energy = 900.2941 kcal/mol (899.8375 without restraints) Performing minimization step: 1883. Total energy = 900.2124 kcal/mol (899.7558 without restraints) Performing minimization step: 1884. Total energy = 900.1307 kcal/mol (899.6743 without restraints) Performing minimization step: 1885. Total energy = 900.0492 kcal/mol (899.5928 without restraints) Performing minimization step: 1886. Total energy = 899.9677 kcal/mol (899.5112 without restraints) Performing minimization step: 1887. Total energy = 899.8867 kcal/mol (899.4303 without restraints) Performing minimization step: 1888. Total energy = 899.8057 kcal/mol (899.3494 without restraints) Performing minimization step: 1889. Total energy = 899.7246 kcal/mol (899.2684 without restraints) Performing minimization step: 1890. Total energy = 899.6437 kcal/mol (899.1877 without restraints) Performing minimization step: 1891. Total energy = 899.5630 kcal/mol (899.1068 without restraints) Performing minimization step: 1892. Total energy = 899.4821 kcal/mol (899.0261 without restraints) Performing minimization step: 1893. Total energy = 899.4015 kcal/mol (898.9454 without restraints) Performing minimization step: 1894. Total energy = 899.3209 kcal/mol (898.8649 without restraints) Performing minimization step: 1895. Total energy = 899.2404 kcal/mol (898.7845 without restraints) Performing minimization step: 1896. Total energy = 899.1605 kcal/mol (898.7046 without restraints) Performing minimization step: 1897. Total energy = 899.0804 kcal/mol (898.6246 without restraints) Performing minimization step: 1898. Total energy = 898.9998 kcal/mol (898.5440 without restraints) Performing minimization step: 1899. Total energy = 898.9198 kcal/mol (898.4640 without restraints) Performing minimization step: 1900. Total energy = 898.8398 kcal/mol (898.3841 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 898.7600 kcal/mol (898.3043 without restraints) Performing minimization step: 1902. Total energy = 898.6798 kcal/mol (898.2242 without restraints) Performing minimization step: 1903. Total energy = 898.6001 kcal/mol (898.1446 without restraints) Performing minimization step: 1904. Total energy = 898.5204 kcal/mol (898.0648 without restraints) Performing minimization step: 1905. Total energy = 898.4409 kcal/mol (897.9854 without restraints) Performing minimization step: 1906. Total energy = 898.3616 kcal/mol (897.9062 without restraints) Performing minimization step: 1907. Total energy = 898.2823 kcal/mol (897.8270 without restraints) Performing minimization step: 1908. Total energy = 898.2032 kcal/mol (897.7478 without restraints) Performing minimization step: 1909. Total energy = 898.1240 kcal/mol (897.6688 without restraints) Performing minimization step: 1910. Total energy = 898.0451 kcal/mol (897.5898 without restraints) Performing minimization step: 1911. Total energy = 897.9662 kcal/mol (897.5110 without restraints) Performing minimization step: 1912. Total energy = 897.8875 kcal/mol (897.4324 without restraints) Performing minimization step: 1913. Total energy = 897.8089 kcal/mol (897.3538 without restraints) Performing minimization step: 1914. Total energy = 897.7303 kcal/mol (897.2752 without restraints) Performing minimization step: 1915. Total energy = 897.6518 kcal/mol (897.1968 without restraints) Performing minimization step: 1916. Total energy = 897.5735 kcal/mol (897.1185 without restraints) Performing minimization step: 1917. Total energy = 897.4951 kcal/mol (897.0401 without restraints) Performing minimization step: 1918. Total energy = 897.4169 kcal/mol (896.9620 without restraints) Performing minimization step: 1919. Total energy = 897.3387 kcal/mol (896.8839 without restraints) Performing minimization step: 1920. Total energy = 897.2610 kcal/mol (896.8062 without restraints) Performing minimization step: 1921. Total energy = 897.1831 kcal/mol (896.7284 without restraints) Performing minimization step: 1922. Total energy = 897.1053 kcal/mol (896.6506 without restraints) Performing minimization step: 1923. Total energy = 897.0276 kcal/mol (896.5730 without restraints) Performing minimization step: 1924. Total energy = 896.9500 kcal/mol (896.4954 without restraints) Performing minimization step: 1925. Total energy = 896.8728 kcal/mol (896.4182 without restraints) Performing minimization step: 1926. Total energy = 896.7951 kcal/mol (896.3406 without restraints) Performing minimization step: 1927. Total energy = 896.7178 kcal/mol (896.2634 without restraints) Performing minimization step: 1928. Total energy = 896.6406 kcal/mol (896.1862 without restraints) Performing minimization step: 1929. Total energy = 896.5634 kcal/mol (896.1090 without restraints) Performing minimization step: 1930. Total energy = 896.4864 kcal/mol (896.0321 without restraints) Performing minimization step: 1931. Total energy = 896.4095 kcal/mol (895.9552 without restraints) Performing minimization step: 1932. Total energy = 896.3327 kcal/mol (895.8784 without restraints) Performing minimization step: 1933. Total energy = 896.2559 kcal/mol (895.8017 without restraints) Performing minimization step: 1934. Total energy = 896.1793 kcal/mol (895.7251 without restraints) Performing minimization step: 1935. Total energy = 896.1027 kcal/mol (895.6486 without restraints) Performing minimization step: 1936. Total energy = 896.0262 kcal/mol (895.5722 without restraints) Performing minimization step: 1937. Total energy = 895.9499 kcal/mol (895.4958 without restraints) Performing minimization step: 1938. Total energy = 895.8734 kcal/mol (895.4194 without restraints) Performing minimization step: 1939. Total energy = 895.7973 kcal/mol (895.3434 without restraints) Performing minimization step: 1940. Total energy = 895.7212 kcal/mol (895.2673 without restraints) Performing minimization step: 1941. Total energy = 895.6452 kcal/mol (895.1913 without restraints) Performing minimization step: 1942. Total energy = 895.5693 kcal/mol (895.1154 without restraints) Performing minimization step: 1943. Total energy = 895.4934 kcal/mol (895.0396 without restraints) Performing minimization step: 1944. Total energy = 895.4177 kcal/mol (894.9639 without restraints) Performing minimization step: 1945. Total energy = 895.3420 kcal/mol (894.8883 without restraints) Performing minimization step: 1946. Total energy = 895.2664 kcal/mol (894.8128 without restraints) Performing minimization step: 1947. Total energy = 895.1910 kcal/mol (894.7373 without restraints) Performing minimization step: 1948. Total energy = 895.1155 kcal/mol (894.6619 without restraints) Performing minimization step: 1949. Total energy = 895.0402 kcal/mol (894.5866 without restraints) Performing minimization step: 1950. Total energy = 894.9650 kcal/mol (894.5115 without restraints) Performing minimization step: 1951. Total energy = 894.8900 kcal/mol (894.4366 without restraints) Performing minimization step: 1952. Total energy = 894.8150 kcal/mol (894.3616 without restraints) Performing minimization step: 1953. Total energy = 894.7401 kcal/mol (894.2867 without restraints) Performing minimization step: 1954. Total energy = 894.6652 kcal/mol (894.2118 without restraints) Performing minimization step: 1955. Total energy = 894.5909 kcal/mol (894.1375 without restraints) Performing minimization step: 1956. Total energy = 894.5162 kcal/mol (894.0629 without restraints) Performing minimization step: 1957. Total energy = 894.4416 kcal/mol (893.9884 without restraints) Performing minimization step: 1958. Total energy = 894.3671 kcal/mol (893.9139 without restraints) Performing minimization step: 1959. Total energy = 894.2927 kcal/mol (893.8396 without restraints) Performing minimization step: 1960. Total energy = 894.2184 kcal/mol (893.7653 without restraints) Performing minimization step: 1961. Total energy = 894.1442 kcal/mol (893.6911 without restraints) Performing minimization step: 1962. Total energy = 894.0698 kcal/mol (893.6168 without restraints) Performing minimization step: 1963. Total energy = 893.9958 kcal/mol (893.5428 without restraints) Performing minimization step: 1964. Total energy = 893.9220 kcal/mol (893.4690 without restraints) Performing minimization step: 1965. Total energy = 893.8481 kcal/mol (893.3952 without restraints) Performing minimization step: 1966. Total energy = 893.7743 kcal/mol (893.3215 without restraints) Performing minimization step: 1967. Total energy = 893.7006 kcal/mol (893.2478 without restraints) Performing minimization step: 1968. Total energy = 893.6270 kcal/mol (893.1742 without restraints) Performing minimization step: 1969. Total energy = 893.5532 kcal/mol (893.1005 without restraints) Performing minimization step: 1970. Total energy = 893.4795 kcal/mol (893.0268 without restraints) Performing minimization step: 1971. Total energy = 893.4060 kcal/mol (892.9533 without restraints) Performing minimization step: 1972. Total energy = 893.3327 kcal/mol (892.8800 without restraints) Performing minimization step: 1973. Total energy = 893.2595 kcal/mol (892.8069 without restraints) Performing minimization step: 1974. Total energy = 893.1864 kcal/mol (892.7338 without restraints) Performing minimization step: 1975. Total energy = 893.1134 kcal/mol (892.6609 without restraints) Performing minimization step: 1976. Total energy = 893.0407 kcal/mol (892.5882 without restraints) Performing minimization step: 1977. Total energy = 892.9679 kcal/mol (892.5155 without restraints) Performing minimization step: 1978. Total energy = 892.8952 kcal/mol (892.4428 without restraints) Performing minimization step: 1979. Total energy = 892.8225 kcal/mol (892.3701 without restraints) Performing minimization step: 1980. Total energy = 892.7499 kcal/mol (892.2975 without restraints) Performing minimization step: 1981. Total energy = 892.6773 kcal/mol (892.2250 without restraints) Performing minimization step: 1982. Total energy = 892.6048 kcal/mol (892.1526 without restraints) Performing minimization step: 1983. Total energy = 892.5325 kcal/mol (892.0802 without restraints) Performing minimization step: 1984. Total energy = 892.4601 kcal/mol (892.0079 without restraints) Performing minimization step: 1985. Total energy = 892.3879 kcal/mol (891.9357 without restraints) Performing minimization step: 1986. Total energy = 892.3155 kcal/mol (891.8634 without restraints) Performing minimization step: 1987. Total energy = 892.2435 kcal/mol (891.7914 without restraints) Performing minimization step: 1988. Total energy = 892.1713 kcal/mol (891.7192 without restraints) Performing minimization step: 1989. Total energy = 892.0994 kcal/mol (891.6474 without restraints) Performing minimization step: 1990. Total energy = 892.0277 kcal/mol (891.5757 without restraints) Performing minimization step: 1991. Total energy = 891.9559 kcal/mol (891.5040 without restraints) Performing minimization step: 1992. Total energy = 891.8843 kcal/mol (891.4324 without restraints) Performing minimization step: 1993. Total energy = 891.8125 kcal/mol (891.3607 without restraints) Performing minimization step: 1994. Total energy = 891.7411 kcal/mol (891.2892 without restraints) Performing minimization step: 1995. Total energy = 891.6699 kcal/mol (891.2181 without restraints) Performing minimization step: 1996. Total energy = 891.5989 kcal/mol (891.1473 without restraints) Performing minimization step: 1997. Total energy = 891.5279 kcal/mol (891.0761 without restraints) Performing minimization step: 1998. Total energy = 891.4567 kcal/mol (891.0050 without restraints) Performing minimization step: 1999. Total energy = 891.3856 kcal/mol (890.9339 without restraints) Performing minimization step: 2000. Total energy = 891.3146 kcal/mol (890.8630 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 891.2437 kcal/mol (890.7921 without restraints) Performing minimization step: 2002. Total energy = 891.1729 kcal/mol (890.7213 without restraints) Performing minimization step: 2003. Total energy = 891.1022 kcal/mol (890.6506 without restraints) Performing minimization step: 2004. Total energy = 891.0315 kcal/mol (890.5800 without restraints) Performing minimization step: 2005. Total energy = 890.9609 kcal/mol (890.5094 without restraints) Performing minimization step: 2006. Total energy = 890.8904 kcal/mol (890.4389 without restraints) Performing minimization step: 2007. Total energy = 890.8198 kcal/mol (890.3683 without restraints) Performing minimization step: 2008. Total energy = 890.7495 kcal/mol (890.2982 without restraints) Performing minimization step: 2009. Total energy = 890.6793 kcal/mol (890.2279 without restraints) Performing minimization step: 2010. Total energy = 890.6091 kcal/mol (890.1578 without restraints) Performing minimization step: 2011. Total energy = 890.5390 kcal/mol (890.0877 without restraints) Performing minimization step: 2012. Total energy = 890.4689 kcal/mol (890.0177 without restraints) Performing minimization step: 2013. Total energy = 890.3991 kcal/mol (889.9480 without restraints) Performing minimization step: 2014. Total energy = 890.3292 kcal/mol (889.8781 without restraints) Performing minimization step: 2015. Total energy = 890.2592 kcal/mol (889.8081 without restraints) Performing minimization step: 2016. Total energy = 890.1894 kcal/mol (889.7384 without restraints) Performing minimization step: 2017. Total energy = 890.1197 kcal/mol (889.6687 without restraints) Performing minimization step: 2018. Total energy = 890.0501 kcal/mol (889.5991 without restraints) Performing minimization step: 2019. Total energy = 889.9806 kcal/mol (889.5296 without restraints) Performing minimization step: 2020. Total energy = 889.9112 kcal/mol (889.4603 without restraints) Performing minimization step: 2021. Total energy = 889.8420 kcal/mol (889.3911 without restraints) Performing minimization step: 2022. Total energy = 889.7727 kcal/mol (889.3218 without restraints) Performing minimization step: 2023. Total energy = 889.7034 kcal/mol (889.2526 without restraints) Performing minimization step: 2024. Total energy = 889.6343 kcal/mol (889.1835 without restraints) Performing minimization step: 2025. Total energy = 889.5654 kcal/mol (889.1146 without restraints) Performing minimization step: 2026. Total energy = 889.4964 kcal/mol (889.0457 without restraints) Performing minimization step: 2027. Total energy = 889.4275 kcal/mol (888.9768 without restraints) Performing minimization step: 2028. Total energy = 889.3587 kcal/mol (888.9080 without restraints) Performing minimization step: 2029. Total energy = 889.2901 kcal/mol (888.8395 without restraints) Performing minimization step: 2030. Total energy = 889.2214 kcal/mol (888.7708 without restraints) Performing minimization step: 2031. Total energy = 889.1526 kcal/mol (888.7020 without restraints) Performing minimization step: 2032. Total energy = 889.0844 kcal/mol (888.6340 without restraints) Performing minimization step: 2033. Total energy = 889.0161 kcal/mol (888.5656 without restraints) Performing minimization step: 2034. Total energy = 888.9478 kcal/mol (888.4974 without restraints) Performing minimization step: 2035. Total energy = 888.8793 kcal/mol (888.4289 without restraints) Performing minimization step: 2036. Total energy = 888.8111 kcal/mol (888.3607 without restraints) Performing minimization step: 2037. Total energy = 888.7429 kcal/mol (888.2925 without restraints) Performing minimization step: 2038. Total energy = 888.6750 kcal/mol (888.2247 without restraints) Performing minimization step: 2039. Total energy = 888.6070 kcal/mol (888.1567 without restraints) Performing minimization step: 2040. Total energy = 888.5392 kcal/mol (888.0889 without restraints) Performing minimization step: 2041. Total energy = 888.4714 kcal/mol (888.0211 without restraints) Performing minimization step: 2042. Total energy = 888.4035 kcal/mol (887.9533 without restraints) Performing minimization step: 2043. Total energy = 888.3358 kcal/mol (887.8856 without restraints) Performing minimization step: 2044. Total energy = 888.2683 kcal/mol (887.8183 without restraints) Performing minimization step: 2045. Total energy = 888.2008 kcal/mol (887.7507 without restraints) Performing minimization step: 2046. Total energy = 888.1334 kcal/mol (887.6833 without restraints) Performing minimization step: 2047. Total energy = 888.0657 kcal/mol (887.6156 without restraints) Performing minimization step: 2048. Total energy = 887.9982 kcal/mol (887.5483 without restraints) Performing minimization step: 2049. Total energy = 887.9310 kcal/mol (887.4810 without restraints) Performing minimization step: 2050. Total energy = 887.8635 kcal/mol (887.4136 without restraints) Performing minimization step: 2051. Total energy = 887.7964 kcal/mol (887.3464 without restraints) Performing minimization step: 2052. Total energy = 887.7292 kcal/mol (887.2793 without restraints) Performing minimization step: 2053. Total energy = 887.6622 kcal/mol (887.2124 without restraints) Performing minimization step: 2054. Total energy = 887.5955 kcal/mol (887.1456 without restraints) Performing minimization step: 2055. Total energy = 887.5286 kcal/mol (887.0788 without restraints) Performing minimization step: 2056. Total energy = 887.4617 kcal/mol (887.0118 without restraints) Performing minimization step: 2057. Total energy = 887.3947 kcal/mol (886.9449 without restraints) Performing minimization step: 2058. Total energy = 887.3278 kcal/mol (886.8781 without restraints) Performing minimization step: 2059. Total energy = 887.2612 kcal/mol (886.8115 without restraints) Performing minimization step: 2060. Total energy = 887.1947 kcal/mol (886.7452 without restraints) Performing minimization step: 2061. Total energy = 887.1284 kcal/mol (886.6788 without restraints) Performing minimization step: 2062. Total energy = 887.0620 kcal/mol (886.6124 without restraints) Performing minimization step: 2063. Total energy = 886.9956 kcal/mol (886.5461 without restraints) Performing minimization step: 2064. Total energy = 886.9294 kcal/mol (886.4799 without restraints) Performing minimization step: 2065. Total energy = 886.8634 kcal/mol (886.4139 without restraints) Performing minimization step: 2066. Total energy = 886.7975 kcal/mol (886.3481 without restraints) Performing minimization step: 2067. Total energy = 886.7320 kcal/mol (886.2826 without restraints) Performing minimization step: 2068. Total energy = 886.6661 kcal/mol (886.2168 without restraints) Performing minimization step: 2069. Total energy = 886.6002 kcal/mol (886.1509 without restraints) Performing minimization step: 2070. Total energy = 886.5344 kcal/mol (886.0851 without restraints) Performing minimization step: 2071. Total energy = 886.4686 kcal/mol (886.0194 without restraints) Performing minimization step: 2072. Total energy = 886.4029 kcal/mol (885.9537 without restraints) Performing minimization step: 2073. Total energy = 886.3373 kcal/mol (885.8881 without restraints) Performing minimization step: 2074. Total energy = 886.2718 kcal/mol (885.8226 without restraints) Performing minimization step: 2075. Total energy = 886.2066 kcal/mol (885.7574 without restraints) Performing minimization step: 2076. Total energy = 886.1413 kcal/mol (885.6922 without restraints) Performing minimization step: 2077. Total energy = 886.0757 kcal/mol (885.6266 without restraints) Performing minimization step: 2078. Total energy = 886.0104 kcal/mol (885.5614 without restraints) Performing minimization step: 2079. Total energy = 885.9454 kcal/mol (885.4965 without restraints) Performing minimization step: 2080. Total energy = 885.8803 kcal/mol (885.4313 without restraints) Performing minimization step: 2081. Total energy = 885.8152 kcal/mol (885.3662 without restraints) Performing minimization step: 2082. Total energy = 885.7502 kcal/mol (885.3013 without restraints) Performing minimization step: 2083. Total energy = 885.6852 kcal/mol (885.2364 without restraints) Performing minimization step: 2084. Total energy = 885.6203 kcal/mol (885.1715 without restraints) Performing minimization step: 2085. Total energy = 885.5559 kcal/mol (885.1071 without restraints) Performing minimization step: 2086. Total energy = 885.4911 kcal/mol (885.0423 without restraints) Performing minimization step: 2087. Total energy = 885.4264 kcal/mol (884.9777 without restraints) Performing minimization step: 2088. Total energy = 885.3618 kcal/mol (884.9131 without restraints) Performing minimization step: 2089. Total energy = 885.2973 kcal/mol (884.8486 without restraints) Performing minimization step: 2090. Total energy = 885.2328 kcal/mol (884.7842 without restraints) Performing minimization step: 2091. Total energy = 885.1683 kcal/mol (884.7196 without restraints) Performing minimization step: 2092. Total energy = 885.1038 kcal/mol (884.6552 without restraints) Performing minimization step: 2093. Total energy = 885.0397 kcal/mol (884.5911 without restraints) Performing minimization step: 2094. Total energy = 884.9755 kcal/mol (884.5270 without restraints) Performing minimization step: 2095. Total energy = 884.9113 kcal/mol (884.4628 without restraints) Performing minimization step: 2096. Total energy = 884.8472 kcal/mol (884.3988 without restraints) Performing minimization step: 2097. Total energy = 884.7832 kcal/mol (884.3348 without restraints) Performing minimization step: 2098. Total energy = 884.7194 kcal/mol (884.2710 without restraints) Performing minimization step: 2099. Total energy = 884.6554 kcal/mol (884.2070 without restraints) Performing minimization step: 2100. Total energy = 884.5915 kcal/mol (884.1432 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 884.5276 kcal/mol (884.0793 without restraints) Performing minimization step: 2102. Total energy = 884.4638 kcal/mol (884.0155 without restraints) Performing minimization step: 2103. Total energy = 884.4001 kcal/mol (883.9519 without restraints) Performing minimization step: 2104. Total energy = 884.3366 kcal/mol (883.8884 without restraints) Performing minimization step: 2105. Total energy = 884.2730 kcal/mol (883.8247 without restraints) Performing minimization step: 2106. Total energy = 884.2097 kcal/mol (883.7615 without restraints) Performing minimization step: 2107. Total energy = 884.1465 kcal/mol (883.6984 without restraints) Performing minimization step: 2108. Total energy = 884.0831 kcal/mol (883.6350 without restraints) Performing minimization step: 2109. Total energy = 884.0198 kcal/mol (883.5718 without restraints) Performing minimization step: 2110. Total energy = 883.9569 kcal/mol (883.5088 without restraints) Performing minimization step: 2111. Total energy = 883.8937 kcal/mol (883.4457 without restraints) Performing minimization step: 2112. Total energy = 883.8308 kcal/mol (883.3829 without restraints) Performing minimization step: 2113. Total energy = 883.7678 kcal/mol (883.3199 without restraints) Performing minimization step: 2114. Total energy = 883.7049 kcal/mol (883.2570 without restraints) Performing minimization step: 2115. Total energy = 883.6420 kcal/mol (883.1942 without restraints) Performing minimization step: 2116. Total energy = 883.5795 kcal/mol (883.1317 without restraints) Performing minimization step: 2117. Total energy = 883.5167 kcal/mol (883.0689 without restraints) Performing minimization step: 2118. Total energy = 883.4539 kcal/mol (883.0061 without restraints) Performing minimization step: 2119. Total energy = 883.3912 kcal/mol (882.9435 without restraints) Performing minimization step: 2120. Total energy = 883.3287 kcal/mol (882.8810 without restraints) Performing minimization step: 2121. Total energy = 883.2658 kcal/mol (882.8182 without restraints) Performing minimization step: 2122. Total energy = 883.2036 kcal/mol (882.7560 without restraints) Performing minimization step: 2123. Total energy = 883.1412 kcal/mol (882.6936 without restraints) Performing minimization step: 2124. Total energy = 883.0791 kcal/mol (882.6318 without restraints) Performing minimization step: 2125. Total energy = 883.0171 kcal/mol (882.5695 without restraints) Performing minimization step: 2126. Total energy = 882.9549 kcal/mol (882.5074 without restraints) Performing minimization step: 2127. Total energy = 882.8928 kcal/mol (882.4453 without restraints) Performing minimization step: 2128. Total energy = 882.8307 kcal/mol (882.3833 without restraints) Performing minimization step: 2129. Total energy = 882.7689 kcal/mol (882.3215 without restraints) Performing minimization step: 2130. Total energy = 882.7070 kcal/mol (882.2596 without restraints) Performing minimization step: 2131. Total energy = 882.6451 kcal/mol (882.1978 without restraints) Performing minimization step: 2132. Total energy = 882.5833 kcal/mol (882.1360 without restraints) Performing minimization step: 2133. Total energy = 882.5216 kcal/mol (882.0743 without restraints) Performing minimization step: 2134. Total energy = 882.4599 kcal/mol (882.0126 without restraints) Performing minimization step: 2135. Total energy = 882.3983 kcal/mol (881.9511 without restraints) Performing minimization step: 2136. Total energy = 882.3367 kcal/mol (881.8895 without restraints) Performing minimization step: 2137. Total energy = 882.2752 kcal/mol (881.8280 without restraints) Performing minimization step: 2138. Total energy = 882.2140 kcal/mol (881.7668 without restraints) Performing minimization step: 2139. Total energy = 882.1526 kcal/mol (881.7055 without restraints) Performing minimization step: 2140. Total energy = 882.0914 kcal/mol (881.6444 without restraints) Performing minimization step: 2141. Total energy = 882.0302 kcal/mol (881.5832 without restraints) Performing minimization step: 2142. Total energy = 881.9690 kcal/mol (881.5220 without restraints) Performing minimization step: 2143. Total energy = 881.9079 kcal/mol (881.4610 without restraints) Performing minimization step: 2144. Total energy = 881.8468 kcal/mol (881.3999 without restraints) Performing minimization step: 2145. Total energy = 881.7856 kcal/mol (881.3387 without restraints) Performing minimization step: 2146. Total energy = 881.7244 kcal/mol (881.2776 without restraints) Performing minimization step: 2147. Total energy = 881.6635 kcal/mol (881.2167 without restraints) Performing minimization step: 2148. Total energy = 881.6027 kcal/mol (881.1559 without restraints) Performing minimization step: 2149. Total energy = 881.5419 kcal/mol (881.0951 without restraints) Performing minimization step: 2150. Total energy = 881.4812 kcal/mol (881.0344 without restraints) Performing minimization step: 2151. Total energy = 881.4205 kcal/mol (880.9738 without restraints) Performing minimization step: 2152. Total energy = 881.3599 kcal/mol (880.9132 without restraints) Performing minimization step: 2153. Total energy = 881.2993 kcal/mol (880.8527 without restraints) Performing minimization step: 2154. Total energy = 881.2386 kcal/mol (880.7920 without restraints) Performing minimization step: 2155. Total energy = 881.1782 kcal/mol (880.7316 without restraints) Performing minimization step: 2156. Total energy = 881.1182 kcal/mol (880.6717 without restraints) Performing minimization step: 2157. Total energy = 881.0579 kcal/mol (880.6114 without restraints) Performing minimization step: 2158. Total energy = 880.9976 kcal/mol (880.5512 without restraints) Performing minimization step: 2159. Total energy = 880.9375 kcal/mol (880.4910 without restraints) Performing minimization step: 2160. Total energy = 880.8775 kcal/mol (880.4312 without restraints) Performing minimization step: 2161. Total energy = 880.8175 kcal/mol (880.3712 without restraints) Performing minimization step: 2162. Total energy = 880.7575 kcal/mol (880.3111 without restraints) Performing minimization step: 2163. Total energy = 880.6975 kcal/mol (880.2512 without restraints) Performing minimization step: 2164. Total energy = 880.6379 kcal/mol (880.1917 without restraints) Performing minimization step: 2165. Total energy = 880.5780 kcal/mol (880.1316 without restraints) Performing minimization step: 2166. Total energy = 880.5180 kcal/mol (880.0718 without restraints) Performing minimization step: 2167. Total energy = 880.4583 kcal/mol (880.0121 without restraints) Performing minimization step: 2168. Total energy = 880.3987 kcal/mol (879.9526 without restraints) Performing minimization step: 2169. Total energy = 880.3391 kcal/mol (879.8930 without restraints) Performing minimization step: 2170. Total energy = 880.2792 kcal/mol (879.8331 without restraints) Performing minimization step: 2171. Total energy = 880.2195 kcal/mol (879.7734 without restraints) Performing minimization step: 2172. Total energy = 880.1603 kcal/mol (879.7143 without restraints) Performing minimization step: 2173. Total energy = 880.1010 kcal/mol (879.6550 without restraints) Performing minimization step: 2174. Total energy = 880.0417 kcal/mol (879.5957 without restraints) Performing minimization step: 2175. Total energy = 879.9824 kcal/mol (879.5365 without restraints) Performing minimization step: 2176. Total energy = 879.9232 kcal/mol (879.4773 without restraints) Performing minimization step: 2177. Total energy = 879.8641 kcal/mol (879.4184 without restraints) Performing minimization step: 2178. Total energy = 879.8052 kcal/mol (879.3594 without restraints) Performing minimization step: 2179. Total energy = 879.7461 kcal/mol (879.3004 without restraints) Performing minimization step: 2180. Total energy = 879.6872 kcal/mol (879.2414 without restraints) Performing minimization step: 2181. Total energy = 879.6280 kcal/mol (879.1823 without restraints) Performing minimization step: 2182. Total energy = 879.5693 kcal/mol (879.1237 without restraints) Performing minimization step: 2183. Total energy = 879.5105 kcal/mol (879.0649 without restraints) Performing minimization step: 2184. Total energy = 879.4518 kcal/mol (879.0062 without restraints) Performing minimization step: 2185. Total energy = 879.3930 kcal/mol (878.9475 without restraints) Performing minimization step: 2186. Total energy = 879.3346 kcal/mol (878.8891 without restraints) Performing minimization step: 2187. Total energy = 879.2759 kcal/mol (878.8304 without restraints) Performing minimization step: 2188. Total energy = 879.2174 kcal/mol (878.7719 without restraints) Performing minimization step: 2189. Total energy = 879.1589 kcal/mol (878.7135 without restraints) Performing minimization step: 2190. Total energy = 879.1004 kcal/mol (878.6550 without restraints) Performing minimization step: 2191. Total energy = 879.0421 kcal/mol (878.5968 without restraints) Performing minimization step: 2192. Total energy = 878.9838 kcal/mol (878.5385 without restraints) Performing minimization step: 2193. Total energy = 878.9255 kcal/mol (878.4802 without restraints) Performing minimization step: 2194. Total energy = 878.8673 kcal/mol (878.4220 without restraints) Performing minimization step: 2195. Total energy = 878.8091 kcal/mol (878.3639 without restraints) Performing minimization step: 2196. Total energy = 878.7513 kcal/mol (878.3063 without restraints) Performing minimization step: 2197. Total energy = 878.6935 kcal/mol (878.2483 without restraints) Performing minimization step: 2198. Total energy = 878.6355 kcal/mol (878.1903 without restraints) Performing minimization step: 2199. Total energy = 878.5774 kcal/mol (878.1322 without restraints) Performing minimization step: 2200. Total energy = 878.5194 kcal/mol (878.0744 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 878.4616 kcal/mol (878.0166 without restraints) Performing minimization step: 2202. Total energy = 878.4044 kcal/mol (877.9594 without restraints) Performing minimization step: 2203. Total energy = 878.3466 kcal/mol (877.9017 without restraints) Performing minimization step: 2204. Total energy = 878.2890 kcal/mol (877.8441 without restraints) Performing minimization step: 2205. Total energy = 878.2314 kcal/mol (877.7865 without restraints) Performing minimization step: 2206. Total energy = 878.1738 kcal/mol (877.7290 without restraints) Performing minimization step: 2207. Total energy = 878.1160 kcal/mol (877.6712 without restraints) Performing minimization step: 2208. Total energy = 878.0586 kcal/mol (877.6138 without restraints) Performing minimization step: 2209. Total energy = 878.0012 kcal/mol (877.5564 without restraints) Performing minimization step: 2210. Total energy = 877.9438 kcal/mol (877.4991 without restraints) Performing minimization step: 2211. Total energy = 877.8865 kcal/mol (877.4419 without restraints) Performing minimization step: 2212. Total energy = 877.8294 kcal/mol (877.3849 without restraints) Performing minimization step: 2213. Total energy = 877.7724 kcal/mol (877.3278 without restraints) Performing minimization step: 2214. Total energy = 877.7153 kcal/mol (877.2707 without restraints) Performing minimization step: 2215. Total energy = 877.6580 kcal/mol (877.2135 without restraints) Performing minimization step: 2216. Total energy = 877.6010 kcal/mol (877.1565 without restraints) Performing minimization step: 2217. Total energy = 877.5440 kcal/mol (877.0996 without restraints) Performing minimization step: 2218. Total energy = 877.4871 kcal/mol (877.0427 without restraints) Performing minimization step: 2219. Total energy = 877.4302 kcal/mol (876.9859 without restraints) Performing minimization step: 2220. Total energy = 877.3734 kcal/mol (876.9291 without restraints) Performing minimization step: 2221. Total energy = 877.3166 kcal/mol (876.8721 without restraints) Performing minimization step: 2222. Total energy = 877.2599 kcal/mol (876.8157 without restraints) Performing minimization step: 2223. Total energy = 877.2032 kcal/mol (876.7588 without restraints) Performing minimization step: 2224. Total energy = 877.1465 kcal/mol (876.7023 without restraints) Performing minimization step: 2225. Total energy = 877.0904 kcal/mol (876.6461 without restraints) Performing minimization step: 2226. Total energy = 877.0338 kcal/mol (876.5897 without restraints) Performing minimization step: 2227. Total energy = 876.9776 kcal/mol (876.5335 without restraints) Performing minimization step: 2228. Total energy = 876.9207 kcal/mol (876.4767 without restraints) Performing minimization step: 2229. Total energy = 876.8646 kcal/mol (876.4206 without restraints) Performing minimization step: 2230. Total energy = 876.8083 kcal/mol (876.3643 without restraints) Performing minimization step: 2231. Total energy = 876.7519 kcal/mol (876.3080 without restraints) Performing minimization step: 2232. Total energy = 876.6954 kcal/mol (876.2515 without restraints) Performing minimization step: 2233. Total energy = 876.6392 kcal/mol (876.1954 without restraints) Performing minimization step: 2234. Total energy = 876.5832 kcal/mol (876.1393 without restraints) Performing minimization step: 2235. Total energy = 876.5272 kcal/mol (876.0834 without restraints) Performing minimization step: 2236. Total energy = 876.4712 kcal/mol (876.0275 without restraints) Performing minimization step: 2237. Total energy = 876.4153 kcal/mol (875.9716 without restraints) Performing minimization step: 2238. Total energy = 876.3593 kcal/mol (875.9156 without restraints) Performing minimization step: 2239. Total energy = 876.3035 kcal/mol (875.8598 without restraints) Performing minimization step: 2240. Total energy = 876.2476 kcal/mol (875.8039 without restraints) Performing minimization step: 2241. Total energy = 876.1918 kcal/mol (875.7482 without restraints) Performing minimization step: 2242. Total energy = 876.1361 kcal/mol (875.6926 without restraints) Performing minimization step: 2243. Total energy = 876.0805 kcal/mol (875.6370 without restraints) Performing minimization step: 2244. Total energy = 876.0249 kcal/mol (875.5814 without restraints) Performing minimization step: 2245. Total energy = 875.9694 kcal/mol (875.5260 without restraints) Performing minimization step: 2246. Total energy = 875.9135 kcal/mol (875.4701 without restraints) Performing minimization step: 2247. Total energy = 875.8581 kcal/mol (875.4147 without restraints) Performing minimization step: 2248. Total energy = 875.8027 kcal/mol (875.3594 without restraints) Performing minimization step: 2249. Total energy = 875.7473 kcal/mol (875.3041 without restraints) Performing minimization step: 2250. Total energy = 875.6921 kcal/mol (875.2489 without restraints) Performing minimization step: 2251. Total energy = 875.6369 kcal/mol (875.1937 without restraints) Performing minimization step: 2252. Total energy = 875.5817 kcal/mol (875.1386 without restraints) Performing minimization step: 2253. Total energy = 875.5266 kcal/mol (875.0835 without restraints) Performing minimization step: 2254. Total energy = 875.4717 kcal/mol (875.0287 without restraints) Performing minimization step: 2255. Total energy = 875.4172 kcal/mol (874.9742 without restraints) Performing minimization step: 2256. Total energy = 875.3623 kcal/mol (874.9193 without restraints) Performing minimization step: 2257. Total energy = 875.3072 kcal/mol (874.8642 without restraints) Performing minimization step: 2258. Total energy = 875.2523 kcal/mol (874.8094 without restraints) Performing minimization step: 2259. Total energy = 875.1975 kcal/mol (874.7546 without restraints) Performing minimization step: 2260. Total energy = 875.1425 kcal/mol (874.6997 without restraints) Performing minimization step: 2261. Total energy = 875.0878 kcal/mol (874.6450 without restraints) Performing minimization step: 2262. Total energy = 875.0332 kcal/mol (874.5904 without restraints) Performing minimization step: 2263. Total energy = 874.9786 kcal/mol (874.5358 without restraints) Performing minimization step: 2264. Total energy = 874.9239 kcal/mol (874.4811 without restraints) Performing minimization step: 2265. Total energy = 874.8695 kcal/mol (874.4269 without restraints) Performing minimization step: 2266. Total energy = 874.8151 kcal/mol (874.3725 without restraints) Performing minimization step: 2267. Total energy = 874.7605 kcal/mol (874.3179 without restraints) Performing minimization step: 2268. Total energy = 874.7062 kcal/mol (874.2636 without restraints) Performing minimization step: 2269. Total energy = 874.6518 kcal/mol (874.2093 without restraints) Performing minimization step: 2270. Total energy = 874.5976 kcal/mol (874.1551 without restraints) Performing minimization step: 2271. Total energy = 874.5434 kcal/mol (874.1010 without restraints) Performing minimization step: 2272. Total energy = 874.4897 kcal/mol (874.0475 without restraints) Performing minimization step: 2273. Total energy = 874.4360 kcal/mol (873.9936 without restraints) Performing minimization step: 2274. Total energy = 874.3819 kcal/mol (873.9396 without restraints) Performing minimization step: 2275. Total energy = 874.3279 kcal/mol (873.8857 without restraints) Performing minimization step: 2276. Total energy = 874.2740 kcal/mol (873.8318 without restraints) Performing minimization step: 2277. Total energy = 874.2201 kcal/mol (873.7779 without restraints) Performing minimization step: 2278. Total energy = 874.1660 kcal/mol (873.7239 without restraints) Performing minimization step: 2279. Total energy = 874.1122 kcal/mol (873.6701 without restraints) Performing minimization step: 2280. Total energy = 874.0586 kcal/mol (873.6167 without restraints) Performing minimization step: 2281. Total energy = 874.0051 kcal/mol (873.5631 without restraints) Performing minimization step: 2282. Total energy = 873.9514 kcal/mol (873.5094 without restraints) Performing minimization step: 2283. Total energy = 873.8979 kcal/mol (873.4559 without restraints) Performing minimization step: 2284. Total energy = 873.8443 kcal/mol (873.4024 without restraints) Performing minimization step: 2285. Total energy = 873.7905 kcal/mol (873.3485 without restraints) Performing minimization step: 2286. Total energy = 873.7367 kcal/mol (873.2948 without restraints) Performing minimization step: 2287. Total energy = 873.6834 kcal/mol (873.2416 without restraints) Performing minimization step: 2288. Total energy = 873.6300 kcal/mol (873.1883 without restraints) Performing minimization step: 2289. Total energy = 873.5763 kcal/mol (873.1346 without restraints) Performing minimization step: 2290. Total energy = 873.5232 kcal/mol (873.0815 without restraints) Performing minimization step: 2291. Total energy = 873.4703 kcal/mol (873.0291 without restraints) Performing minimization step: 2292. Total energy = 873.4177 kcal/mol (872.9762 without restraints) Performing minimization step: 2293. Total energy = 873.3646 kcal/mol (872.9231 without restraints) Performing minimization step: 2294. Total energy = 873.3115 kcal/mol (872.8700 without restraints) Performing minimization step: 2295. Total energy = 873.2585 kcal/mol (872.8170 without restraints) Performing minimization step: 2296. Total energy = 873.2055 kcal/mol (872.7641 without restraints) Performing minimization step: 2297. Total energy = 873.1524 kcal/mol (872.7112 without restraints) Performing minimization step: 2298. Total energy = 873.0996 kcal/mol (872.6583 without restraints) Performing minimization step: 2299. Total energy = 873.0466 kcal/mol (872.6053 without restraints) Performing minimization step: 2300. Total energy = 872.9938 kcal/mol (872.5525 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 872.9410 kcal/mol (872.4998 without restraints) Performing minimization step: 2302. Total energy = 872.8883 kcal/mol (872.4471 without restraints) Performing minimization step: 2303. Total energy = 872.8355 kcal/mol (872.3946 without restraints) Performing minimization step: 2304. Total energy = 872.7831 kcal/mol (872.3420 without restraints) Performing minimization step: 2305. Total energy = 872.7306 kcal/mol (872.2896 without restraints) Performing minimization step: 2306. Total energy = 872.6781 kcal/mol (872.2371 without restraints) Performing minimization step: 2307. Total energy = 872.6257 kcal/mol (872.1847 without restraints) Performing minimization step: 2308. Total energy = 872.5734 kcal/mol (872.1325 without restraints) Performing minimization step: 2309. Total energy = 872.5208 kcal/mol (872.0799 without restraints) Performing minimization step: 2310. Total energy = 872.4680 kcal/mol (872.0272 without restraints) Performing minimization step: 2311. Total energy = 872.4157 kcal/mol (871.9749 without restraints) Performing minimization step: 2312. Total energy = 872.3635 kcal/mol (871.9227 without restraints) Performing minimization step: 2313. Total energy = 872.3114 kcal/mol (871.8708 without restraints) Performing minimization step: 2314. Total energy = 872.2596 kcal/mol (871.8189 without restraints) Performing minimization step: 2315. Total energy = 872.2070 kcal/mol (871.7664 without restraints) Performing minimization step: 2316. Total energy = 872.1547 kcal/mol (871.7141 without restraints) Performing minimization step: 2317. Total energy = 872.1028 kcal/mol (871.6623 without restraints) Performing minimization step: 2318. Total energy = 872.0508 kcal/mol (871.6103 without restraints) Performing minimization step: 2319. Total energy = 871.9988 kcal/mol (871.5582 without restraints) Performing minimization step: 2320. Total energy = 871.9469 kcal/mol (871.5065 without restraints) Performing minimization step: 2321. Total energy = 871.8951 kcal/mol (871.4547 without restraints) Performing minimization step: 2322. Total energy = 871.8433 kcal/mol (871.4030 without restraints) Performing minimization step: 2323. Total energy = 871.7925 kcal/mol (871.3522 without restraints) Performing minimization step: 2324. Total energy = 871.7411 kcal/mol (871.3010 without restraints) Performing minimization step: 2325. Total energy = 871.6895 kcal/mol (871.2493 without restraints) Performing minimization step: 2326. Total energy = 871.6383 kcal/mol (871.1981 without restraints) Performing minimization step: 2327. Total energy = 871.5865 kcal/mol (871.1464 without restraints) Performing minimization step: 2328. Total energy = 871.5349 kcal/mol (871.0949 without restraints) Performing minimization step: 2329. Total energy = 871.4834 kcal/mol (871.0434 without restraints) Performing minimization step: 2330. Total energy = 871.4320 kcal/mol (870.9920 without restraints) Performing minimization step: 2331. Total energy = 871.3807 kcal/mol (870.9408 without restraints) Performing minimization step: 2332. Total energy = 871.3293 kcal/mol (870.8894 without restraints) Performing minimization step: 2333. Total energy = 871.2779 kcal/mol (870.8381 without restraints) Performing minimization step: 2334. Total energy = 871.2267 kcal/mol (870.7869 without restraints) Performing minimization step: 2335. Total energy = 871.1754 kcal/mol (870.7357 without restraints) Performing minimization step: 2336. Total energy = 871.1243 kcal/mol (870.6846 without restraints) Performing minimization step: 2337. Total energy = 871.0731 kcal/mol (870.6335 without restraints) Performing minimization step: 2338. Total energy = 871.0221 kcal/mol (870.5824 without restraints) Performing minimization step: 2339. Total energy = 870.9708 kcal/mol (870.5313 without restraints) Performing minimization step: 2340. Total energy = 870.9199 kcal/mol (870.4803 without restraints) Performing minimization step: 2341. Total energy = 870.8689 kcal/mol (870.4294 without restraints) Performing minimization step: 2342. Total energy = 870.8180 kcal/mol (870.3786 without restraints) Performing minimization step: 2343. Total energy = 870.7671 kcal/mol (870.3277 without restraints) Performing minimization step: 2344. Total energy = 870.7166 kcal/mol (870.2772 without restraints) Performing minimization step: 2345. Total energy = 870.6657 kcal/mol (870.2263 without restraints) Performing minimization step: 2346. Total energy = 870.6148 kcal/mol (870.1755 without restraints) Performing minimization step: 2347. Total energy = 870.5639 kcal/mol (870.1247 without restraints) Performing minimization step: 2348. Total energy = 870.5137 kcal/mol (870.0745 without restraints) Performing minimization step: 2349. Total energy = 870.4629 kcal/mol (870.0239 without restraints) Performing minimization step: 2350. Total energy = 870.4124 kcal/mol (869.9734 without restraints) Performing minimization step: 2351. Total energy = 870.3619 kcal/mol (869.9229 without restraints) Performing minimization step: 2352. Total energy = 870.3113 kcal/mol (869.8723 without restraints) Performing minimization step: 2353. Total energy = 870.2608 kcal/mol (869.8219 without restraints) Performing minimization step: 2354. Total energy = 870.2105 kcal/mol (869.7716 without restraints) Performing minimization step: 2355. Total energy = 870.1601 kcal/mol (869.7213 without restraints) Performing minimization step: 2356. Total energy = 870.1099 kcal/mol (869.6711 without restraints) Performing minimization step: 2357. Total energy = 870.0596 kcal/mol (869.6209 without restraints) Performing minimization step: 2358. Total energy = 870.0095 kcal/mol (869.5708 without restraints) Performing minimization step: 2359. Total energy = 869.9591 kcal/mol (869.5205 without restraints) Performing minimization step: 2360. Total energy = 869.9090 kcal/mol (869.4704 without restraints) Performing minimization step: 2361. Total energy = 869.8587 kcal/mol (869.4202 without restraints) Performing minimization step: 2362. Total energy = 869.8087 kcal/mol (869.3702 without restraints) Performing minimization step: 2363. Total energy = 869.7585 kcal/mol (869.3200 without restraints) Performing minimization step: 2364. Total energy = 869.7085 kcal/mol (869.2702 without restraints) Performing minimization step: 2365. Total energy = 869.6587 kcal/mol (869.2203 without restraints) Performing minimization step: 2366. Total energy = 869.6089 kcal/mol (869.1707 without restraints) Performing minimization step: 2367. Total energy = 869.5594 kcal/mol (869.1211 without restraints) Performing minimization step: 2368. Total energy = 869.5096 kcal/mol (869.0715 without restraints) Performing minimization step: 2369. Total energy = 869.4597 kcal/mol (869.0216 without restraints) Performing minimization step: 2370. Total energy = 869.4100 kcal/mol (868.9719 without restraints) Performing minimization step: 2371. Total energy = 869.3603 kcal/mol (868.9223 without restraints) Performing minimization step: 2372. Total energy = 869.3107 kcal/mol (868.8727 without restraints) Performing minimization step: 2373. Total energy = 869.2612 kcal/mol (868.8232 without restraints) Performing minimization step: 2374. Total energy = 869.2117 kcal/mol (868.7737 without restraints) Performing minimization step: 2375. Total energy = 869.1624 kcal/mol (868.7246 without restraints) Performing minimization step: 2376. Total energy = 869.1130 kcal/mol (868.6752 without restraints) Performing minimization step: 2377. Total energy = 869.0636 kcal/mol (868.6258 without restraints) Performing minimization step: 2378. Total energy = 869.0142 kcal/mol (868.5765 without restraints) Performing minimization step: 2379. Total energy = 868.9649 kcal/mol (868.5272 without restraints) Performing minimization step: 2380. Total energy = 868.9155 kcal/mol (868.4778 without restraints) Performing minimization step: 2381. Total energy = 868.8662 kcal/mol (868.4286 without restraints) Performing minimization step: 2382. Total energy = 868.8170 kcal/mol (868.3795 without restraints) Performing minimization step: 2383. Total energy = 868.7679 kcal/mol (868.3304 without restraints) Performing minimization step: 2384. Total energy = 868.7189 kcal/mol (868.2815 without restraints) Performing minimization step: 2385. Total energy = 868.6699 kcal/mol (868.2326 without restraints) Performing minimization step: 2386. Total energy = 868.6206 kcal/mol (868.1833 without restraints) Performing minimization step: 2387. Total energy = 868.5717 kcal/mol (868.1345 without restraints) Performing minimization step: 2388. Total energy = 868.5229 kcal/mol (868.0857 without restraints) Performing minimization step: 2389. Total energy = 868.4740 kcal/mol (868.0368 without restraints) Performing minimization step: 2390. Total energy = 868.4252 kcal/mol (867.9880 without restraints) Performing minimization step: 2391. Total energy = 868.3762 kcal/mol (867.9391 without restraints) Performing minimization step: 2392. Total energy = 868.3274 kcal/mol (867.8904 without restraints) Performing minimization step: 2393. Total energy = 868.2785 kcal/mol (867.8415 without restraints) Performing minimization step: 2394. Total energy = 868.2298 kcal/mol (867.7929 without restraints) Performing minimization step: 2395. Total energy = 868.1811 kcal/mol (867.7443 without restraints) Performing minimization step: 2396. Total energy = 868.1329 kcal/mol (867.6961 without restraints) Performing minimization step: 2397. Total energy = 868.0843 kcal/mol (867.6475 without restraints) Performing minimization step: 2398. Total energy = 868.0362 kcal/mol (867.5994 without restraints) Performing minimization step: 2399. Total energy = 867.9879 kcal/mol (867.5512 without restraints) Performing minimization step: 2400. Total energy = 867.9394 kcal/mol (867.5028 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 867.8910 kcal/mol (867.4545 without restraints) Performing minimization step: 2402. Total energy = 867.8427 kcal/mol (867.4062 without restraints) Performing minimization step: 2403. Total energy = 867.7944 kcal/mol (867.3579 without restraints) Performing minimization step: 2404. Total energy = 867.7463 kcal/mol (867.3099 without restraints) Performing minimization step: 2405. Total energy = 867.6985 kcal/mol (867.2621 without restraints) Performing minimization step: 2406. Total energy = 867.6500 kcal/mol (867.2137 without restraints) Performing minimization step: 2407. Total energy = 867.6019 kcal/mol (867.1656 without restraints) Performing minimization step: 2408. Total energy = 867.5537 kcal/mol (867.1175 without restraints) Performing minimization step: 2409. Total energy = 867.5056 kcal/mol (867.0694 without restraints) Performing minimization step: 2410. Total energy = 867.4575 kcal/mol (867.0214 without restraints) Performing minimization step: 2411. Total energy = 867.4095 kcal/mol (866.9735 without restraints) Performing minimization step: 2412. Total energy = 867.3615 kcal/mol (866.9255 without restraints) Performing minimization step: 2413. Total energy = 867.3136 kcal/mol (866.8777 without restraints) Performing minimization step: 2414. Total energy = 867.2657 kcal/mol (866.8297 without restraints) Performing minimization step: 2415. Total energy = 867.2175 kcal/mol (866.7816 without restraints) Performing minimization step: 2416. Total energy = 867.1695 kcal/mol (866.7337 without restraints) Performing minimization step: 2417. Total energy = 867.1220 kcal/mol (866.6862 without restraints) Performing minimization step: 2418. Total energy = 867.0742 kcal/mol (866.6385 without restraints) Performing minimization step: 2419. Total energy = 867.0269 kcal/mol (866.5913 without restraints) Performing minimization step: 2420. Total energy = 866.9792 kcal/mol (866.5435 without restraints) Performing minimization step: 2421. Total energy = 866.9314 kcal/mol (866.4959 without restraints) Performing minimization step: 2422. Total energy = 866.8841 kcal/mol (866.4486 without restraints) Performing minimization step: 2423. Total energy = 866.8367 kcal/mol (866.4013 without restraints) Performing minimization step: 2424. Total energy = 866.7891 kcal/mol (866.3537 without restraints) Performing minimization step: 2425. Total energy = 866.7417 kcal/mol (866.3064 without restraints) Performing minimization step: 2426. Total energy = 866.6944 kcal/mol (866.2591 without restraints) Performing minimization step: 2427. Total energy = 866.6470 kcal/mol (866.2118 without restraints) Performing minimization step: 2428. Total energy = 866.5999 kcal/mol (866.1648 without restraints) Performing minimization step: 2429. Total energy = 866.5524 kcal/mol (866.1173 without restraints) Performing minimization step: 2430. Total energy = 866.5052 kcal/mol (866.0702 without restraints) Performing minimization step: 2431. Total energy = 866.4580 kcal/mol (866.0230 without restraints) Performing minimization step: 2432. Total energy = 866.4108 kcal/mol (865.9759 without restraints) Performing minimization step: 2433. Total energy = 866.3637 kcal/mol (865.9288 without restraints) Performing minimization step: 2434. Total energy = 866.3168 kcal/mol (865.8820 without restraints) Performing minimization step: 2435. Total energy = 866.2697 kcal/mol (865.8350 without restraints) Performing minimization step: 2436. Total energy = 866.2224 kcal/mol (865.7876 without restraints) Performing minimization step: 2437. Total energy = 866.1748 kcal/mol (865.7402 without restraints) Performing minimization step: 2438. Total energy = 866.1278 kcal/mol (865.6931 without restraints) Performing minimization step: 2439. Total energy = 866.0808 kcal/mol (865.6463 without restraints) Performing minimization step: 2440. Total energy = 866.0340 kcal/mol (865.5995 without restraints) Performing minimization step: 2441. Total energy = 865.9872 kcal/mol (865.5527 without restraints) Performing minimization step: 2442. Total energy = 865.9409 kcal/mol (865.5065 without restraints) Performing minimization step: 2443. Total energy = 865.8942 kcal/mol (865.4599 without restraints) Performing minimization step: 2444. Total energy = 865.8473 kcal/mol (865.4130 without restraints) Performing minimization step: 2445. Total energy = 865.8008 kcal/mol (865.3666 without restraints) Performing minimization step: 2446. Total energy = 865.7542 kcal/mol (865.3200 without restraints) Performing minimization step: 2447. Total energy = 865.7079 kcal/mol (865.2738 without restraints) Performing minimization step: 2448. Total energy = 865.6613 kcal/mol (865.2273 without restraints) Performing minimization step: 2449. Total energy = 865.6148 kcal/mol (865.1808 without restraints) Performing minimization step: 2450. Total energy = 865.5683 kcal/mol (865.1344 without restraints) Performing minimization step: 2451. Total energy = 865.5219 kcal/mol (865.0880 without restraints) Performing minimization step: 2452. Total energy = 865.4757 kcal/mol (865.0418 without restraints) Performing minimization step: 2453. Total energy = 865.4293 kcal/mol (864.9955 without restraints) Performing minimization step: 2454. Total energy = 865.3830 kcal/mol (864.9493 without restraints) Performing minimization step: 2455. Total energy = 865.3368 kcal/mol (864.9033 without restraints) Performing minimization step: 2456. Total energy = 865.2907 kcal/mol (864.8571 without restraints) Performing minimization step: 2457. Total energy = 865.2445 kcal/mol (864.8109 without restraints) Performing minimization step: 2458. Total energy = 865.1985 kcal/mol (864.7651 without restraints) Performing minimization step: 2459. Total energy = 865.1524 kcal/mol (864.7190 without restraints) Performing minimization step: 2460. Total energy = 865.1063 kcal/mol (864.6729 without restraints) Performing minimization step: 2461. Total energy = 865.0605 kcal/mol (864.6272 without restraints) Performing minimization step: 2462. Total energy = 865.0142 kcal/mol (864.5810 without restraints) Performing minimization step: 2463. Total energy = 864.9683 kcal/mol (864.5351 without restraints) Performing minimization step: 2464. Total energy = 864.9223 kcal/mol (864.4892 without restraints) Performing minimization step: 2465. Total energy = 864.8764 kcal/mol (864.4433 without restraints) Performing minimization step: 2466. Total energy = 864.8305 kcal/mol (864.3975 without restraints) Performing minimization step: 2467. Total energy = 864.7847 kcal/mol (864.3517 without restraints) Performing minimization step: 2468. Total energy = 864.7389 kcal/mol (864.3060 without restraints) Performing minimization step: 2469. Total energy = 864.6933 kcal/mol (864.2605 without restraints) Performing minimization step: 2470. Total energy = 864.6476 kcal/mol (864.2148 without restraints) Performing minimization step: 2471. Total energy = 864.6020 kcal/mol (864.1692 without restraints) Performing minimization step: 2472. Total energy = 864.5563 kcal/mol (864.1237 without restraints) Performing minimization step: 2473. Total energy = 864.5109 kcal/mol (864.0783 without restraints) Performing minimization step: 2474. Total energy = 864.4656 kcal/mol (864.0330 without restraints) Performing minimization step: 2475. Total energy = 864.4201 kcal/mol (863.9876 without restraints) Performing minimization step: 2476. Total energy = 864.3746 kcal/mol (863.9422 without restraints) Performing minimization step: 2477. Total energy = 864.3290 kcal/mol (863.8966 without restraints) Performing minimization step: 2478. Total energy = 864.2837 kcal/mol (863.8514 without restraints) Performing minimization step: 2479. Total energy = 864.2385 kcal/mol (863.8063 without restraints) Performing minimization step: 2480. Total energy = 864.1932 kcal/mol (863.7610 without restraints) Performing minimization step: 2481. Total energy = 864.1478 kcal/mol (863.7157 without restraints) Performing minimization step: 2482. Total energy = 864.1026 kcal/mol (863.6705 without restraints) Performing minimization step: 2483. Total energy = 864.0576 kcal/mol (863.6255 without restraints) Performing minimization step: 2484. Total energy = 864.0124 kcal/mol (863.5804 without restraints) Performing minimization step: 2485. Total energy = 863.9672 kcal/mol (863.5353 without restraints) Performing minimization step: 2486. Total energy = 863.9221 kcal/mol (863.4903 without restraints) Performing minimization step: 2487. Total energy = 863.8770 kcal/mol (863.4452 without restraints) Performing minimization step: 2488. Total energy = 863.8319 kcal/mol (863.4002 without restraints) Performing minimization step: 2489. Total energy = 863.7871 kcal/mol (863.3554 without restraints) Performing minimization step: 2490. Total energy = 863.7421 kcal/mol (863.3105 without restraints) Performing minimization step: 2491. Total energy = 863.6972 kcal/mol (863.2656 without restraints) Performing minimization step: 2492. Total energy = 863.6522 kcal/mol (863.2208 without restraints) Performing minimization step: 2493. Total energy = 863.6074 kcal/mol (863.1759 without restraints) Performing minimization step: 2494. Total energy = 863.5625 kcal/mol (863.1312 without restraints) Performing minimization step: 2495. Total energy = 863.5174 kcal/mol (863.0862 without restraints) Performing minimization step: 2496. Total energy = 863.4727 kcal/mol (863.0415 without restraints) Performing minimization step: 2497. Total energy = 863.4278 kcal/mol (862.9966 without restraints) Performing minimization step: 2498. Total energy = 863.3831 kcal/mol (862.9519 without restraints) Performing minimization step: 2499. Total energy = 863.3384 kcal/mol (862.9073 without restraints) Performing minimization step: 2500. Total energy = 863.2937 kcal/mol (862.8627 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 863.2493 kcal/mol (862.8182 without restraints) Performing minimization step: 2502. Total energy = 863.2046 kcal/mol (862.7737 without restraints) Performing minimization step: 2503. Total energy = 863.1601 kcal/mol (862.7293 without restraints) Performing minimization step: 2504. Total energy = 863.1156 kcal/mol (862.6848 without restraints) Performing minimization step: 2505. Total energy = 863.0711 kcal/mol (862.6404 without restraints) Performing minimization step: 2506. Total energy = 863.0267 kcal/mol (862.5961 without restraints) Performing minimization step: 2507. Total energy = 862.9828 kcal/mol (862.5522 without restraints) Performing minimization step: 2508. Total energy = 862.9384 kcal/mol (862.5079 without restraints) Performing minimization step: 2509. Total energy = 862.8941 kcal/mol (862.4637 without restraints) Performing minimization step: 2510. Total energy = 862.8498 kcal/mol (862.4195 without restraints) Performing minimization step: 2511. Total energy = 862.8059 kcal/mol (862.3755 without restraints) Performing minimization step: 2512. Total energy = 862.7616 kcal/mol (862.3313 without restraints) Performing minimization step: 2513. Total energy = 862.7174 kcal/mol (862.2872 without restraints) Performing minimization step: 2514. Total energy = 862.6733 kcal/mol (862.2432 without restraints) Performing minimization step: 2515. Total energy = 862.6292 kcal/mol (862.1991 without restraints) Performing minimization step: 2516. Total energy = 862.5851 kcal/mol (862.1551 without restraints) Performing minimization step: 2517. Total energy = 862.5411 kcal/mol (862.1111 without restraints) Performing minimization step: 2518. Total energy = 862.4973 kcal/mol (862.0674 without restraints) Performing minimization step: 2519. Total energy = 862.4533 kcal/mol (862.0235 without restraints) Performing minimization step: 2520. Total energy = 862.4094 kcal/mol (861.9797 without restraints) Performing minimization step: 2521. Total energy = 862.3655 kcal/mol (861.9358 without restraints) Performing minimization step: 2522. Total energy = 862.3217 kcal/mol (861.8920 without restraints) Performing minimization step: 2523. Total energy = 862.2778 kcal/mol (861.8483 without restraints) Performing minimization step: 2524. Total energy = 862.2338 kcal/mol (861.8043 without restraints) Performing minimization step: 2525. Total energy = 862.1901 kcal/mol (861.7607 without restraints) Performing minimization step: 2526. Total energy = 862.1464 kcal/mol (861.7170 without restraints) Performing minimization step: 2527. Total energy = 862.1025 kcal/mol (861.6732 without restraints) Performing minimization step: 2528. Total energy = 862.0587 kcal/mol (861.6294 without restraints) Performing minimization step: 2529. Total energy = 862.0151 kcal/mol (861.5859 without restraints) Performing minimization step: 2530. Total energy = 861.9718 kcal/mol (861.5426 without restraints) Performing minimization step: 2531. Total energy = 861.9280 kcal/mol (861.4989 without restraints) Performing minimization step: 2532. Total energy = 861.8849 kcal/mol (861.4560 without restraints) Performing minimization step: 2533. Total energy = 861.8415 kcal/mol (861.4126 without restraints) Performing minimization step: 2534. Total energy = 861.7980 kcal/mol (861.3691 without restraints) Performing minimization step: 2535. Total energy = 861.7546 kcal/mol (861.3258 without restraints) Performing minimization step: 2536. Total energy = 861.7112 kcal/mol (861.2825 without restraints) Performing minimization step: 2537. Total energy = 861.6679 kcal/mol (861.2393 without restraints) Performing minimization step: 2538. Total energy = 861.6246 kcal/mol (861.1961 without restraints) Performing minimization step: 2539. Total energy = 861.5814 kcal/mol (861.1528 without restraints) Performing minimization step: 2540. Total energy = 861.5381 kcal/mol (861.1097 without restraints) Performing minimization step: 2541. Total energy = 861.4947 kcal/mol (861.0663 without restraints) Performing minimization step: 2542. Total energy = 861.4515 kcal/mol (861.0232 without restraints) Performing minimization step: 2543. Total energy = 861.4086 kcal/mol (860.9803 without restraints) Performing minimization step: 2544. Total energy = 861.3655 kcal/mol (860.9373 without restraints) Performing minimization step: 2545. Total energy = 861.3224 kcal/mol (860.8943 without restraints) Performing minimization step: 2546. Total energy = 861.2792 kcal/mol (860.8511 without restraints) Performing minimization step: 2547. Total energy = 861.2362 kcal/mol (860.8082 without restraints) Performing minimization step: 2548. Total energy = 861.1932 kcal/mol (860.7653 without restraints) Performing minimization step: 2549. Total energy = 861.1503 kcal/mol (860.7224 without restraints) Performing minimization step: 2550. Total energy = 861.1074 kcal/mol (860.6796 without restraints) Performing minimization step: 2551. Total energy = 861.0645 kcal/mol (860.6368 without restraints) Performing minimization step: 2552. Total energy = 861.0217 kcal/mol (860.5940 without restraints) Performing minimization step: 2553. Total energy = 860.9789 kcal/mol (860.5513 without restraints) Performing minimization step: 2554. Total energy = 860.9362 kcal/mol (860.5086 without restraints) Performing minimization step: 2555. Total energy = 860.8936 kcal/mol (860.4662 without restraints) Performing minimization step: 2556. Total energy = 860.8509 kcal/mol (860.4235 without restraints) Performing minimization step: 2557. Total energy = 860.8083 kcal/mol (860.3809 without restraints) Performing minimization step: 2558. Total energy = 860.7663 kcal/mol (860.3390 without restraints) Performing minimization step: 2559. Total energy = 860.7235 kcal/mol (860.2963 without restraints) Performing minimization step: 2560. Total energy = 860.6809 kcal/mol (860.2538 without restraints) Performing minimization step: 2561. Total energy = 860.6388 kcal/mol (860.2117 without restraints) Performing minimization step: 2562. Total energy = 860.5963 kcal/mol (860.1693 without restraints) Performing minimization step: 2563. Total energy = 860.5538 kcal/mol (860.1269 without restraints) Performing minimization step: 2564. Total energy = 860.5115 kcal/mol (860.0847 without restraints) Performing minimization step: 2565. Total energy = 860.4692 kcal/mol (860.0424 without restraints) Performing minimization step: 2566. Total energy = 860.4268 kcal/mol (860.0001 without restraints) Performing minimization step: 2567. Total energy = 860.3845 kcal/mol (859.9578 without restraints) Performing minimization step: 2568. Total energy = 860.3426 kcal/mol (859.9160 without restraints) Performing minimization step: 2569. Total energy = 860.3005 kcal/mol (859.8740 without restraints) Performing minimization step: 2570. Total energy = 860.2583 kcal/mol (859.8318 without restraints) Performing minimization step: 2571. Total energy = 860.2161 kcal/mol (859.7897 without restraints) Performing minimization step: 2572. Total energy = 860.1742 kcal/mol (859.7479 without restraints) Performing minimization step: 2573. Total energy = 860.1321 kcal/mol (859.7059 without restraints) Performing minimization step: 2574. Total energy = 860.0900 kcal/mol (859.6638 without restraints) Performing minimization step: 2575. Total energy = 860.0479 kcal/mol (859.6218 without restraints) Performing minimization step: 2576. Total energy = 860.0059 kcal/mol (859.5799 without restraints) Performing minimization step: 2577. Total energy = 859.9639 kcal/mol (859.5379 without restraints) Performing minimization step: 2578. Total energy = 859.9219 kcal/mol (859.4960 without restraints) Performing minimization step: 2579. Total energy = 859.8800 kcal/mol (859.4541 without restraints) Performing minimization step: 2580. Total energy = 859.8381 kcal/mol (859.4123 without restraints) Performing minimization step: 2581. Total energy = 859.7962 kcal/mol (859.3705 without restraints) Performing minimization step: 2582. Total energy = 859.7545 kcal/mol (859.3289 without restraints) Performing minimization step: 2583. Total energy = 859.7127 kcal/mol (859.2871 without restraints) Performing minimization step: 2584. Total energy = 859.6709 kcal/mol (859.2454 without restraints) Performing minimization step: 2585. Total energy = 859.6292 kcal/mol (859.2037 without restraints) Performing minimization step: 2586. Total energy = 859.5874 kcal/mol (859.1621 without restraints) Performing minimization step: 2587. Total energy = 859.5458 kcal/mol (859.1205 without restraints) Performing minimization step: 2588. Total energy = 859.5039 kcal/mol (859.0786 without restraints) Performing minimization step: 2589. Total energy = 859.4618 kcal/mol (859.0367 without restraints) Performing minimization step: 2590. Total energy = 859.4205 kcal/mol (858.9954 without restraints) Performing minimization step: 2591. Total energy = 859.3792 kcal/mol (858.9542 without restraints) Performing minimization step: 2592. Total energy = 859.3376 kcal/mol (858.9127 without restraints) Performing minimization step: 2593. Total energy = 859.2961 kcal/mol (858.8713 without restraints) Performing minimization step: 2594. Total energy = 859.2549 kcal/mol (858.8301 without restraints) Performing minimization step: 2595. Total energy = 859.2132 kcal/mol (858.7885 without restraints) Performing minimization step: 2596. Total energy = 859.1718 kcal/mol (858.7472 without restraints) Performing minimization step: 2597. Total energy = 859.1304 kcal/mol (858.7059 without restraints) Performing minimization step: 2598. Total energy = 859.0893 kcal/mol (858.6648 without restraints) Performing minimization step: 2599. Total energy = 859.0480 kcal/mol (858.6236 without restraints) Performing minimization step: 2600. Total energy = 859.0067 kcal/mol (858.5824 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 858.9655 kcal/mol (858.5412 without restraints) Performing minimization step: 2602. Total energy = 858.9243 kcal/mol (858.5000 without restraints) Performing minimization step: 2603. Total energy = 858.8829 kcal/mol (858.4587 without restraints) Performing minimization step: 2604. Total energy = 858.8417 kcal/mol (858.4176 without restraints) Performing minimization step: 2605. Total energy = 858.8005 kcal/mol (858.3764 without restraints) Performing minimization step: 2606. Total energy = 858.7593 kcal/mol (858.3354 without restraints) Performing minimization step: 2607. Total energy = 858.7180 kcal/mol (858.2942 without restraints) Performing minimization step: 2608. Total energy = 858.6770 kcal/mol (858.2532 without restraints) Performing minimization step: 2609. Total energy = 858.6360 kcal/mol (858.2122 without restraints) Performing minimization step: 2610. Total energy = 858.5947 kcal/mol (858.1709 without restraints) Performing minimization step: 2611. Total energy = 858.5537 kcal/mol (858.1301 without restraints) Performing minimization step: 2612. Total energy = 858.5130 kcal/mol (858.0895 without restraints) Performing minimization step: 2613. Total energy = 858.4721 kcal/mol (858.0487 without restraints) Performing minimization step: 2614. Total energy = 858.4313 kcal/mol (858.0079 without restraints) Performing minimization step: 2615. Total energy = 858.3907 kcal/mol (857.9674 without restraints) Performing minimization step: 2616. Total energy = 858.3499 kcal/mol (857.9267 without restraints) Performing minimization step: 2617. Total energy = 858.3092 kcal/mol (857.8860 without restraints) Performing minimization step: 2618. Total energy = 858.2684 kcal/mol (857.8454 without restraints) Performing minimization step: 2619. Total energy = 858.2278 kcal/mol (857.8048 without restraints) Performing minimization step: 2620. Total energy = 858.1871 kcal/mol (857.7642 without restraints) Performing minimization step: 2621. Total energy = 858.1465 kcal/mol (857.7236 without restraints) Performing minimization step: 2622. Total energy = 858.1061 kcal/mol (857.6833 without restraints) Performing minimization step: 2623. Total energy = 858.0656 kcal/mol (857.6428 without restraints) Performing minimization step: 2624. Total energy = 858.0250 kcal/mol (857.6024 without restraints) Performing minimization step: 2625. Total energy = 857.9845 kcal/mol (857.5620 without restraints) Performing minimization step: 2626. Total energy = 857.9440 kcal/mol (857.5215 without restraints) Performing minimization step: 2627. Total energy = 857.9033 kcal/mol (857.4809 without restraints) Performing minimization step: 2628. Total energy = 857.8628 kcal/mol (857.4403 without restraints) Performing minimization step: 2629. Total energy = 857.8224 kcal/mol (857.4001 without restraints) Performing minimization step: 2630. Total energy = 857.7821 kcal/mol (857.3599 without restraints) Performing minimization step: 2631. Total energy = 857.7419 kcal/mol (857.3197 without restraints) Performing minimization step: 2632. Total energy = 857.7016 kcal/mol (857.2795 without restraints) Performing minimization step: 2633. Total energy = 857.6615 kcal/mol (857.2395 without restraints) Performing minimization step: 2634. Total energy = 857.6213 kcal/mol (857.1994 without restraints) Performing minimization step: 2635. Total energy = 857.5811 kcal/mol (857.1593 without restraints) Performing minimization step: 2636. Total energy = 857.5411 kcal/mol (857.1194 without restraints) Performing minimization step: 2637. Total energy = 857.5010 kcal/mol (857.0793 without restraints) Performing minimization step: 2638. Total energy = 857.4609 kcal/mol (857.0393 without restraints) Performing minimization step: 2639. Total energy = 857.4212 kcal/mol (856.9997 without restraints) Performing minimization step: 2640. Total energy = 857.3814 kcal/mol (856.9599 without restraints) Performing minimization step: 2641. Total energy = 857.3413 kcal/mol (856.9199 without restraints) Performing minimization step: 2642. Total energy = 857.3013 kcal/mol (856.8800 without restraints) Performing minimization step: 2643. Total energy = 857.2615 kcal/mol (856.8403 without restraints) Performing minimization step: 2644. Total energy = 857.2217 kcal/mol (856.8005 without restraints) Performing minimization step: 2645. Total energy = 857.1819 kcal/mol (856.7608 without restraints) Performing minimization step: 2646. Total energy = 857.1420 kcal/mol (856.7210 without restraints) Performing minimization step: 2647. Total energy = 857.1024 kcal/mol (856.6815 without restraints) Performing minimization step: 2648. Total energy = 857.0626 kcal/mol (856.6418 without restraints) Performing minimization step: 2649. Total energy = 857.0230 kcal/mol (856.6022 without restraints) Performing minimization step: 2650. Total energy = 856.9832 kcal/mol (856.5625 without restraints) Performing minimization step: 2651. Total energy = 856.9436 kcal/mol (856.5231 without restraints) Performing minimization step: 2652. Total energy = 856.9041 kcal/mol (856.4835 without restraints) Performing minimization step: 2653. Total energy = 856.8644 kcal/mol (856.4439 without restraints) Performing minimization step: 2654. Total energy = 856.8248 kcal/mol (856.4043 without restraints) Performing minimization step: 2655. Total energy = 856.7853 kcal/mol (856.3649 without restraints) Performing minimization step: 2656. Total energy = 856.7457 kcal/mol (856.3254 without restraints) Performing minimization step: 2657. Total energy = 856.7062 kcal/mol (856.2860 without restraints) Performing minimization step: 2658. Total energy = 856.6666 kcal/mol (856.2465 without restraints) Performing minimization step: 2659. Total energy = 856.6273 kcal/mol (856.2073 without restraints) Performing minimization step: 2660. Total energy = 856.5877 kcal/mol (856.1678 without restraints) Performing minimization step: 2661. Total energy = 856.5483 kcal/mol (856.1284 without restraints) Performing minimization step: 2662. Total energy = 856.5089 kcal/mol (856.0891 without restraints) Performing minimization step: 2663. Total energy = 856.4698 kcal/mol (856.0503 without restraints) Performing minimization step: 2664. Total energy = 856.4307 kcal/mol (856.0110 without restraints) Performing minimization step: 2665. Total energy = 856.3916 kcal/mol (855.9720 without restraints) Performing minimization step: 2666. Total energy = 856.3524 kcal/mol (855.9330 without restraints) Performing minimization step: 2667. Total energy = 856.3133 kcal/mol (855.8938 without restraints) Performing minimization step: 2668. Total energy = 856.2742 kcal/mol (855.8549 without restraints) Performing minimization step: 2669. Total energy = 856.2353 kcal/mol (855.8160 without restraints) Performing minimization step: 2670. Total energy = 856.1961 kcal/mol (855.7769 without restraints) Performing minimization step: 2671. Total energy = 856.1570 kcal/mol (855.7379 without restraints) Performing minimization step: 2672. Total energy = 856.1178 kcal/mol (855.6988 without restraints) Performing minimization step: 2673. Total energy = 856.0788 kcal/mol (855.6598 without restraints) Performing minimization step: 2674. Total energy = 856.0397 kcal/mol (855.6208 without restraints) Performing minimization step: 2675. Total energy = 856.0008 kcal/mol (855.5821 without restraints) Performing minimization step: 2676. Total energy = 855.9619 kcal/mol (855.5432 without restraints) Performing minimization step: 2677. Total energy = 855.9230 kcal/mol (855.5043 without restraints) Performing minimization step: 2678. Total energy = 855.8840 kcal/mol (855.4654 without restraints) Performing minimization step: 2679. Total energy = 855.8452 kcal/mol (855.4267 without restraints) Performing minimization step: 2680. Total energy = 855.8065 kcal/mol (855.3881 without restraints) Performing minimization step: 2681. Total energy = 855.7679 kcal/mol (855.3496 without restraints) Performing minimization step: 2682. Total energy = 855.7293 kcal/mol (855.3110 without restraints) Performing minimization step: 2683. Total energy = 855.6903 kcal/mol (855.2721 without restraints) Performing minimization step: 2684. Total energy = 855.6515 kcal/mol (855.2334 without restraints) Performing minimization step: 2685. Total energy = 855.6127 kcal/mol (855.1947 without restraints) Performing minimization step: 2686. Total energy = 855.5740 kcal/mol (855.1561 without restraints) Performing minimization step: 2687. Total energy = 855.5354 kcal/mol (855.1175 without restraints) Performing minimization step: 2688. Total energy = 855.4967 kcal/mol (855.0790 without restraints) Performing minimization step: 2689. Total energy = 855.4581 kcal/mol (855.0404 without restraints) Performing minimization step: 2690. Total energy = 855.4195 kcal/mol (855.0019 without restraints) Performing minimization step: 2691. Total energy = 855.3812 kcal/mol (854.9636 without restraints) Performing minimization step: 2692. Total energy = 855.3426 kcal/mol (854.9251 without restraints) Performing minimization step: 2693. Total energy = 855.3039 kcal/mol (854.8865 without restraints) Performing minimization step: 2694. Total energy = 855.2654 kcal/mol (854.8481 without restraints) Performing minimization step: 2695. Total energy = 855.2272 kcal/mol (854.8100 without restraints) Performing minimization step: 2696. Total energy = 855.1888 kcal/mol (854.7716 without restraints) Performing minimization step: 2697. Total energy = 855.1504 kcal/mol (854.7333 without restraints) Performing minimization step: 2698. Total energy = 855.1120 kcal/mol (854.6950 without restraints) Performing minimization step: 2699. Total energy = 855.0737 kcal/mol (854.6568 without restraints) Performing minimization step: 2700. Total energy = 855.0354 kcal/mol (854.6185 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 854.9971 kcal/mol (854.5803 without restraints) Performing minimization step: 2702. Total energy = 854.9586 kcal/mol (854.5419 without restraints) Performing minimization step: 2703. Total energy = 854.9205 kcal/mol (854.5039 without restraints) Performing minimization step: 2704. Total energy = 854.8823 kcal/mol (854.4658 without restraints) Performing minimization step: 2705. Total energy = 854.8442 kcal/mol (854.4277 without restraints) Performing minimization step: 2706. Total energy = 854.8065 kcal/mol (854.3904 without restraints) Performing minimization step: 2707. Total energy = 854.7687 kcal/mol (854.3524 without restraints) Performing minimization step: 2708. Total energy = 854.7305 kcal/mol (854.3142 without restraints) Performing minimization step: 2709. Total energy = 854.6923 kcal/mol (854.2761 without restraints) Performing minimization step: 2710. Total energy = 854.6542 kcal/mol (854.2382 without restraints) Performing minimization step: 2711. Total energy = 854.6162 kcal/mol (854.2002 without restraints) Performing minimization step: 2712. Total energy = 854.5782 kcal/mol (854.1623 without restraints) Performing minimization step: 2713. Total energy = 854.5402 kcal/mol (854.1244 without restraints) Performing minimization step: 2714. Total energy = 854.5024 kcal/mol (854.0867 without restraints) Performing minimization step: 2715. Total energy = 854.4645 kcal/mol (854.0488 without restraints) Performing minimization step: 2716. Total energy = 854.4271 kcal/mol (854.0115 without restraints) Performing minimization step: 2717. Total energy = 854.3893 kcal/mol (853.9738 without restraints) Performing minimization step: 2718. Total energy = 854.3513 kcal/mol (853.9359 without restraints) Performing minimization step: 2719. Total energy = 854.3135 kcal/mol (853.8982 without restraints) Performing minimization step: 2720. Total energy = 854.2757 kcal/mol (853.8605 without restraints) Performing minimization step: 2721. Total energy = 854.2379 kcal/mol (853.8228 without restraints) Performing minimization step: 2722. Total energy = 854.2004 kcal/mol (853.7854 without restraints) Performing minimization step: 2723. Total energy = 854.1628 kcal/mol (853.7478 without restraints) Performing minimization step: 2724. Total energy = 854.1254 kcal/mol (853.7104 without restraints) Performing minimization step: 2725. Total energy = 854.0878 kcal/mol (853.6729 without restraints) Performing minimization step: 2726. Total energy = 854.0501 kcal/mol (853.6352 without restraints) Performing minimization step: 2727. Total energy = 854.0124 kcal/mol (853.5977 without restraints) Performing minimization step: 2728. Total energy = 853.9748 kcal/mol (853.5602 without restraints) Performing minimization step: 2729. Total energy = 853.9373 kcal/mol (853.5228 without restraints) Performing minimization step: 2730. Total energy = 853.8998 kcal/mol (853.4854 without restraints) Performing minimization step: 2731. Total energy = 853.8623 kcal/mol (853.4480 without restraints) Performing minimization step: 2732. Total energy = 853.8249 kcal/mol (853.4106 without restraints) Performing minimization step: 2733. Total energy = 853.7875 kcal/mol (853.3733 without restraints) Performing minimization step: 2734. Total energy = 853.7501 kcal/mol (853.3360 without restraints) Performing minimization step: 2735. Total energy = 853.7127 kcal/mol (853.2987 without restraints) Performing minimization step: 2736. Total energy = 853.6754 kcal/mol (853.2614 without restraints) Performing minimization step: 2737. Total energy = 853.6381 kcal/mol (853.2242 without restraints) Performing minimization step: 2738. Total energy = 853.6008 kcal/mol (853.1870 without restraints) Performing minimization step: 2739. Total energy = 853.5640 kcal/mol (853.1503 without restraints) Performing minimization step: 2740. Total energy = 853.5265 kcal/mol (853.1129 without restraints) Performing minimization step: 2741. Total energy = 853.4893 kcal/mol (853.0758 without restraints) Performing minimization step: 2742. Total energy = 853.4522 kcal/mol (853.0387 without restraints) Performing minimization step: 2743. Total energy = 853.4150 kcal/mol (853.0017 without restraints) Performing minimization step: 2744. Total energy = 853.3779 kcal/mol (852.9646 without restraints) Performing minimization step: 2745. Total energy = 853.3408 kcal/mol (852.9276 without restraints) Performing minimization step: 2746. Total energy = 853.3039 kcal/mol (852.8908 without restraints) Performing minimization step: 2747. Total energy = 853.2669 kcal/mol (852.8539 without restraints) Performing minimization step: 2748. Total energy = 853.2299 kcal/mol (852.8169 without restraints) Performing minimization step: 2749. Total energy = 853.1929 kcal/mol (852.7800 without restraints) Performing minimization step: 2750. Total energy = 853.1559 kcal/mol (852.7431 without restraints) Performing minimization step: 2751. Total energy = 853.1190 kcal/mol (852.7063 without restraints) Performing minimization step: 2752. Total energy = 853.0822 kcal/mol (852.6696 without restraints) Performing minimization step: 2753. Total energy = 853.0454 kcal/mol (852.6328 without restraints) Performing minimization step: 2754. Total energy = 853.0085 kcal/mol (852.5961 without restraints) Performing minimization step: 2755. Total energy = 852.9717 kcal/mol (852.5593 without restraints) Performing minimization step: 2756. Total energy = 852.9349 kcal/mol (852.5226 without restraints) Performing minimization step: 2757. Total energy = 852.8981 kcal/mol (852.4859 without restraints) Performing minimization step: 2758. Total energy = 852.8614 kcal/mol (852.4493 without restraints) Performing minimization step: 2759. Total energy = 852.8247 kcal/mol (852.4127 without restraints) Performing minimization step: 2760. Total energy = 852.7882 kcal/mol (852.3763 without restraints) Performing minimization step: 2761. Total energy = 852.7517 kcal/mol (852.3398 without restraints) Performing minimization step: 2762. Total energy = 852.7153 kcal/mol (852.3034 without restraints) Performing minimization step: 2763. Total energy = 852.6785 kcal/mol (852.2667 without restraints) Performing minimization step: 2764. Total energy = 852.6418 kcal/mol (852.2302 without restraints) Performing minimization step: 2765. Total energy = 852.6052 kcal/mol (852.1937 without restraints) Performing minimization step: 2766. Total energy = 852.5687 kcal/mol (852.1572 without restraints) Performing minimization step: 2767. Total energy = 852.5321 kcal/mol (852.1207 without restraints) Performing minimization step: 2768. Total energy = 852.4956 kcal/mol (852.0843 without restraints) Performing minimization step: 2769. Total energy = 852.4594 kcal/mol (852.0481 without restraints) Performing minimization step: 2770. Total energy = 852.4229 kcal/mol (852.0118 without restraints) Performing minimization step: 2771. Total energy = 852.3867 kcal/mol (851.9756 without restraints) Performing minimization step: 2772. Total energy = 852.3503 kcal/mol (851.9393 without restraints) Performing minimization step: 2773. Total energy = 852.3139 kcal/mol (851.9030 without restraints) Performing minimization step: 2774. Total energy = 852.2779 kcal/mol (851.8671 without restraints) Performing minimization step: 2775. Total energy = 852.2414 kcal/mol (851.8307 without restraints) Performing minimization step: 2776. Total energy = 852.2048 kcal/mol (851.7941 without restraints) Performing minimization step: 2777. Total energy = 852.1685 kcal/mol (851.7579 without restraints) Performing minimization step: 2778. Total energy = 852.1323 kcal/mol (851.7218 without restraints) Performing minimization step: 2779. Total energy = 852.0963 kcal/mol (851.6859 without restraints) Performing minimization step: 2780. Total energy = 852.0599 kcal/mol (851.6496 without restraints) Performing minimization step: 2781. Total energy = 852.0237 kcal/mol (851.6136 without restraints) Performing minimization step: 2782. Total energy = 851.9876 kcal/mol (851.5775 without restraints) Performing minimization step: 2783. Total energy = 851.9515 kcal/mol (851.5415 without restraints) Performing minimization step: 2784. Total energy = 851.9154 kcal/mol (851.5055 without restraints) Performing minimization step: 2785. Total energy = 851.8791 kcal/mol (851.4692 without restraints) Performing minimization step: 2786. Total energy = 851.8432 kcal/mol (851.4335 without restraints) Performing minimization step: 2787. Total energy = 851.8072 kcal/mol (851.3975 without restraints) Performing minimization step: 2788. Total energy = 851.7712 kcal/mol (851.3615 without restraints) Performing minimization step: 2789. Total energy = 851.7351 kcal/mol (851.3256 without restraints) Performing minimization step: 2790. Total energy = 851.6992 kcal/mol (851.2897 without restraints) Performing minimization step: 2791. Total energy = 851.6632 kcal/mol (851.2537 without restraints) Performing minimization step: 2792. Total energy = 851.6269 kcal/mol (851.2176 without restraints) Performing minimization step: 2793. Total energy = 851.5909 kcal/mol (851.1815 without restraints) Performing minimization step: 2794. Total energy = 851.5549 kcal/mol (851.1458 without restraints) Performing minimization step: 2795. Total energy = 851.5191 kcal/mol (851.1101 without restraints) Performing minimization step: 2796. Total energy = 851.4833 kcal/mol (851.0744 without restraints) Performing minimization step: 2797. Total energy = 851.4479 kcal/mol (851.0390 without restraints) Performing minimization step: 2798. Total energy = 851.4122 kcal/mol (851.0034 without restraints) Performing minimization step: 2799. Total energy = 851.3766 kcal/mol (850.9679 without restraints) Performing minimization step: 2800. Total energy = 851.3411 kcal/mol (850.9325 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 851.3052 kcal/mol (850.8967 without restraints) Performing minimization step: 2802. Total energy = 851.2696 kcal/mol (850.8612 without restraints) Performing minimization step: 2803. Total energy = 851.2340 kcal/mol (850.8257 without restraints) Performing minimization step: 2804. Total energy = 851.1985 kcal/mol (850.7903 without restraints) Performing minimization step: 2805. Total energy = 851.1629 kcal/mol (850.7548 without restraints) Performing minimization step: 2806. Total energy = 851.1274 kcal/mol (850.7193 without restraints) Performing minimization step: 2807. Total energy = 851.0919 kcal/mol (850.6839 without restraints) Performing minimization step: 2808. Total energy = 851.0564 kcal/mol (850.6485 without restraints) Performing minimization step: 2809. Total energy = 851.0209 kcal/mol (850.6131 without restraints) Performing minimization step: 2810. Total energy = 850.9854 kcal/mol (850.5777 without restraints) Performing minimization step: 2811. Total energy = 850.9500 kcal/mol (850.5424 without restraints) Performing minimization step: 2812. Total energy = 850.9146 kcal/mol (850.5071 without restraints) Performing minimization step: 2813. Total energy = 850.8793 kcal/mol (850.4720 without restraints) Performing minimization step: 2814. Total energy = 850.8439 kcal/mol (850.4365 without restraints) Performing minimization step: 2815. Total energy = 850.8086 kcal/mol (850.4013 without restraints) Performing minimization step: 2816. Total energy = 850.7736 kcal/mol (850.3664 without restraints) Performing minimization step: 2817. Total energy = 850.7384 kcal/mol (850.3314 without restraints) Performing minimization step: 2818. Total energy = 850.7037 kcal/mol (850.2968 without restraints) Performing minimization step: 2819. Total energy = 850.6682 kcal/mol (850.2613 without restraints) Performing minimization step: 2820. Total energy = 850.6330 kcal/mol (850.2262 without restraints) Performing minimization step: 2821. Total energy = 850.5979 kcal/mol (850.1911 without restraints) Performing minimization step: 2822. Total energy = 850.5626 kcal/mol (850.1559 without restraints) Performing minimization step: 2823. Total energy = 850.5275 kcal/mol (850.1209 without restraints) Performing minimization step: 2824. Total energy = 850.4921 kcal/mol (850.0856 without restraints) Performing minimization step: 2825. Total energy = 850.4571 kcal/mol (850.0506 without restraints) Performing minimization step: 2826. Total energy = 850.4220 kcal/mol (850.0156 without restraints) Performing minimization step: 2827. Total energy = 850.3869 kcal/mol (849.9807 without restraints) Performing minimization step: 2828. Total energy = 850.3520 kcal/mol (849.9460 without restraints) Performing minimization step: 2829. Total energy = 850.3172 kcal/mol (849.9111 without restraints) Performing minimization step: 2830. Total energy = 850.2824 kcal/mol (849.8764 without restraints) Performing minimization step: 2831. Total energy = 850.2475 kcal/mol (849.8416 without restraints) Performing minimization step: 2832. Total energy = 850.2126 kcal/mol (849.8067 without restraints) Performing minimization step: 2833. Total energy = 850.1777 kcal/mol (849.7719 without restraints) Performing minimization step: 2834. Total energy = 850.1428 kcal/mol (849.7372 without restraints) Performing minimization step: 2835. Total energy = 850.1080 kcal/mol (849.7024 without restraints) Performing minimization step: 2836. Total energy = 850.0733 kcal/mol (849.6679 without restraints) Performing minimization step: 2837. Total energy = 850.0389 kcal/mol (849.6338 without restraints) Performing minimization step: 2838. Total energy = 850.0042 kcal/mol (849.5989 without restraints) Performing minimization step: 2839. Total energy = 849.9694 kcal/mol (849.5642 without restraints) Performing minimization step: 2840. Total energy = 849.9351 kcal/mol (849.5300 without restraints) Performing minimization step: 2841. Total energy = 849.9007 kcal/mol (849.4957 without restraints) Performing minimization step: 2842. Total energy = 849.8661 kcal/mol (849.4611 without restraints) Performing minimization step: 2843. Total energy = 849.8317 kcal/mol (849.4268 without restraints) Performing minimization step: 2844. Total energy = 849.7970 kcal/mol (849.3923 without restraints) Performing minimization step: 2845. Total energy = 849.7620 kcal/mol (849.3573 without restraints) Performing minimization step: 2846. Total energy = 849.7274 kcal/mol (849.3228 without restraints) Performing minimization step: 2847. Total energy = 849.6929 kcal/mol (849.2884 without restraints) Performing minimization step: 2848. Total energy = 849.6583 kcal/mol (849.2539 without restraints) Performing minimization step: 2849. Total energy = 849.6238 kcal/mol (849.2194 without restraints) Performing minimization step: 2850. Total energy = 849.5893 kcal/mol (849.1851 without restraints) Performing minimization step: 2851. Total energy = 849.5549 kcal/mol (849.1507 without restraints) Performing minimization step: 2852. Total energy = 849.5204 kcal/mol (849.1164 without restraints) Performing minimization step: 2853. Total energy = 849.4860 kcal/mol (849.0820 without restraints) Performing minimization step: 2854. Total energy = 849.4516 kcal/mol (849.0477 without restraints) Performing minimization step: 2855. Total energy = 849.4172 kcal/mol (849.0134 without restraints) Performing minimization step: 2856. Total energy = 849.3829 kcal/mol (848.9791 without restraints) Performing minimization step: 2857. Total energy = 849.3487 kcal/mol (848.9451 without restraints) Performing minimization step: 2858. Total energy = 849.3144 kcal/mol (848.9108 without restraints) Performing minimization step: 2859. Total energy = 849.2801 kcal/mol (848.8767 without restraints) Performing minimization step: 2860. Total energy = 849.2459 kcal/mol (848.8425 without restraints) Performing minimization step: 2861. Total energy = 849.2117 kcal/mol (848.8084 without restraints) Performing minimization step: 2862. Total energy = 849.1777 kcal/mol (848.7745 without restraints) Performing minimization step: 2863. Total energy = 849.1435 kcal/mol (848.7404 without restraints) Performing minimization step: 2864. Total energy = 849.1095 kcal/mol (848.7066 without restraints) Performing minimization step: 2865. Total energy = 849.0754 kcal/mol (848.6725 without restraints) Performing minimization step: 2866. Total energy = 849.0415 kcal/mol (848.6387 without restraints) Performing minimization step: 2867. Total energy = 849.0076 kcal/mol (848.6049 without restraints) Performing minimization step: 2868. Total energy = 848.9736 kcal/mol (848.5709 without restraints) Performing minimization step: 2869. Total energy = 848.9395 kcal/mol (848.5370 without restraints) Performing minimization step: 2870. Total energy = 848.9055 kcal/mol (848.5030 without restraints) Performing minimization step: 2871. Total energy = 848.8716 kcal/mol (848.4692 without restraints) Performing minimization step: 2872. Total energy = 848.8375 kcal/mol (848.4350 without restraints) Performing minimization step: 2873. Total energy = 848.8034 kcal/mol (848.4012 without restraints) Performing minimization step: 2874. Total energy = 848.7693 kcal/mol (848.3672 without restraints) Performing minimization step: 2875. Total energy = 848.7354 kcal/mol (848.3333 without restraints) Performing minimization step: 2876. Total energy = 848.7014 kcal/mol (848.2995 without restraints) Performing minimization step: 2877. Total energy = 848.6676 kcal/mol (848.2657 without restraints) Performing minimization step: 2878. Total energy = 848.6338 kcal/mol (848.2320 without restraints) Performing minimization step: 2879. Total energy = 848.5998 kcal/mol (848.1981 without restraints) Performing minimization step: 2880. Total energy = 848.5659 kcal/mol (848.1644 without restraints) Performing minimization step: 2881. Total energy = 848.5324 kcal/mol (848.1310 without restraints) Performing minimization step: 2882. Total energy = 848.4988 kcal/mol (848.0974 without restraints) Performing minimization step: 2883. Total energy = 848.4651 kcal/mol (848.0638 without restraints) Performing minimization step: 2884. Total energy = 848.4313 kcal/mol (848.0301 without restraints) Performing minimization step: 2885. Total energy = 848.3977 kcal/mol (847.9965 without restraints) Performing minimization step: 2886. Total energy = 848.3640 kcal/mol (847.9630 without restraints) Performing minimization step: 2887. Total energy = 848.3305 kcal/mol (847.9296 without restraints) Performing minimization step: 2888. Total energy = 848.2969 kcal/mol (847.8960 without restraints) Performing minimization step: 2889. Total energy = 848.2633 kcal/mol (847.8625 without restraints) Performing minimization step: 2890. Total energy = 848.2297 kcal/mol (847.8290 without restraints) Performing minimization step: 2891. Total energy = 848.1959 kcal/mol (847.7953 without restraints) Performing minimization step: 2892. Total energy = 848.1623 kcal/mol (847.7618 without restraints) Performing minimization step: 2893. Total energy = 848.1286 kcal/mol (847.7282 without restraints) Performing minimization step: 2894. Total energy = 848.0953 kcal/mol (847.6950 without restraints) Performing minimization step: 2895. Total energy = 848.0619 kcal/mol (847.6616 without restraints) Performing minimization step: 2896. Total energy = 848.0284 kcal/mol (847.6282 without restraints) Performing minimization step: 2897. Total energy = 847.9949 kcal/mol (847.5949 without restraints) Performing minimization step: 2898. Total energy = 847.9615 kcal/mol (847.5615 without restraints) Performing minimization step: 2899. Total energy = 847.9281 kcal/mol (847.5283 without restraints) Performing minimization step: 2900. Total energy = 847.8948 kcal/mol (847.4950 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 847.8615 kcal/mol (847.4618 without restraints) Performing minimization step: 2902. Total energy = 847.8281 kcal/mol (847.4286 without restraints) Performing minimization step: 2903. Total energy = 847.7948 kcal/mol (847.3953 without restraints) Performing minimization step: 2904. Total energy = 847.7616 kcal/mol (847.3622 without restraints) Performing minimization step: 2905. Total energy = 847.7284 kcal/mol (847.3290 without restraints) Performing minimization step: 2906. Total energy = 847.6952 kcal/mol (847.2959 without restraints) Performing minimization step: 2907. Total energy = 847.6620 kcal/mol (847.2628 without restraints) Performing minimization step: 2908. Total energy = 847.6288 kcal/mol (847.2297 without restraints) Performing minimization step: 2909. Total energy = 847.5956 kcal/mol (847.1967 without restraints) Performing minimization step: 2910. Total energy = 847.5625 kcal/mol (847.1636 without restraints) Performing minimization step: 2911. Total energy = 847.5294 kcal/mol (847.1306 without restraints) Performing minimization step: 2912. Total energy = 847.4964 kcal/mol (847.0977 without restraints) Performing minimization step: 2913. Total energy = 847.4630 kcal/mol (847.0644 without restraints) Performing minimization step: 2914. Total energy = 847.4304 kcal/mol (847.0322 without restraints) Performing minimization step: 2915. Total energy = 847.3977 kcal/mol (846.9993 without restraints) Performing minimization step: 2916. Total energy = 847.3647 kcal/mol (846.9663 without restraints) Performing minimization step: 2917. Total energy = 847.3316 kcal/mol (846.9334 without restraints) Performing minimization step: 2918. Total energy = 847.2988 kcal/mol (846.9007 without restraints) Performing minimization step: 2919. Total energy = 847.2659 kcal/mol (846.8678 without restraints) Performing minimization step: 2920. Total energy = 847.2329 kcal/mol (846.8350 without restraints) Performing minimization step: 2921. Total energy = 847.1998 kcal/mol (846.8019 without restraints) Performing minimization step: 2922. Total energy = 847.1669 kcal/mol (846.7691 without restraints) Performing minimization step: 2923. Total energy = 847.1340 kcal/mol (846.7363 without restraints) Performing minimization step: 2924. Total energy = 847.1012 kcal/mol (846.7036 without restraints) Performing minimization step: 2925. Total energy = 847.0684 kcal/mol (846.6709 without restraints) Performing minimization step: 2926. Total energy = 847.0356 kcal/mol (846.6382 without restraints) Performing minimization step: 2927. Total energy = 847.0028 kcal/mol (846.6055 without restraints) Performing minimization step: 2928. Total energy = 846.9699 kcal/mol (846.5726 without restraints) Performing minimization step: 2929. Total energy = 846.9369 kcal/mol (846.5397 without restraints) Performing minimization step: 2930. Total energy = 846.9044 kcal/mol (846.5073 without restraints) Performing minimization step: 2931. Total energy = 846.8717 kcal/mol (846.4747 without restraints) Performing minimization step: 2932. Total energy = 846.8394 kcal/mol (846.4426 without restraints) Performing minimization step: 2933. Total energy = 846.8070 kcal/mol (846.4103 without restraints) Performing minimization step: 2934. Total energy = 846.7744 kcal/mol (846.3778 without restraints) Performing minimization step: 2935. Total energy = 846.7420 kcal/mol (846.3455 without restraints) Performing minimization step: 2936. Total energy = 846.7095 kcal/mol (846.3132 without restraints) Performing minimization step: 2937. Total energy = 846.6773 kcal/mol (846.2809 without restraints) Performing minimization step: 2938. Total energy = 846.6449 kcal/mol (846.2486 without restraints) Performing minimization step: 2939. Total energy = 846.6122 kcal/mol (846.2160 without restraints) Performing minimization step: 2940. Total energy = 846.5797 kcal/mol (846.1836 without restraints) Performing minimization step: 2941. Total energy = 846.5472 kcal/mol (846.1512 without restraints) Performing minimization step: 2942. Total energy = 846.5148 kcal/mol (846.1188 without restraints) Performing minimization step: 2943. Total energy = 846.4823 kcal/mol (846.0864 without restraints) Performing minimization step: 2944. Total energy = 846.4499 kcal/mol (846.0541 without restraints) Performing minimization step: 2945. Total energy = 846.4174 kcal/mol (846.0218 without restraints) Performing minimization step: 2946. Total energy = 846.3851 kcal/mol (845.9895 without restraints) Performing minimization step: 2947. Total energy = 846.3527 kcal/mol (845.9572 without restraints) Performing minimization step: 2948. Total energy = 846.3203 kcal/mol (845.9250 without restraints) Performing minimization step: 2949. Total energy = 846.2880 kcal/mol (845.8927 without restraints) Performing minimization step: 2950. Total energy = 846.2557 kcal/mol (845.8605 without restraints) Performing minimization step: 2951. Total energy = 846.2236 kcal/mol (845.8286 without restraints) Performing minimization step: 2952. Total energy = 846.1914 kcal/mol (845.7964 without restraints) Performing minimization step: 2953. Total energy = 846.1592 kcal/mol (845.7642 without restraints) Performing minimization step: 2954. Total energy = 846.1269 kcal/mol (845.7321 without restraints) Performing minimization step: 2955. Total energy = 846.0947 kcal/mol (845.7000 without restraints) Performing minimization step: 2956. Total energy = 846.0624 kcal/mol (845.6677 without restraints) Performing minimization step: 2957. Total energy = 846.0301 kcal/mol (845.6356 without restraints) Performing minimization step: 2958. Total energy = 845.9980 kcal/mol (845.6035 without restraints) Performing minimization step: 2959. Total energy = 845.9661 kcal/mol (845.5717 without restraints) Performing minimization step: 2960. Total energy = 845.9339 kcal/mol (845.5396 without restraints) Performing minimization step: 2961. Total energy = 845.9017 kcal/mol (845.5075 without restraints) Performing minimization step: 2962. Total energy = 845.8696 kcal/mol (845.4755 without restraints) Performing minimization step: 2963. Total energy = 845.8376 kcal/mol (845.4436 without restraints) Performing minimization step: 2964. Total energy = 845.8056 kcal/mol (845.4117 without restraints) Performing minimization step: 2965. Total energy = 845.7737 kcal/mol (845.3799 without restraints) Performing minimization step: 2966. Total energy = 845.7417 kcal/mol (845.3480 without restraints) Performing minimization step: 2967. Total energy = 845.7093 kcal/mol (845.3157 without restraints) Performing minimization step: 2968. Total energy = 845.6774 kcal/mol (845.2838 without restraints) Performing minimization step: 2969. Total energy = 845.6456 kcal/mol (845.2522 without restraints) Performing minimization step: 2970. Total energy = 845.6137 kcal/mol (845.2204 without restraints) Performing minimization step: 2971. Total energy = 845.5818 kcal/mol (845.1886 without restraints) Performing minimization step: 2972. Total energy = 845.5500 kcal/mol (845.1568 without restraints) Performing minimization step: 2973. Total energy = 845.5181 kcal/mol (845.1251 without restraints) Performing minimization step: 2974. Total energy = 845.4860 kcal/mol (845.0931 without restraints) Performing minimization step: 2975. Total energy = 845.4545 kcal/mol (845.0616 without restraints) Performing minimization step: 2976. Total energy = 845.4229 kcal/mol (845.0301 without restraints) Performing minimization step: 2977. Total energy = 845.3912 kcal/mol (844.9985 without restraints) Performing minimization step: 2978. Total energy = 845.3599 kcal/mol (844.9673 without restraints) Performing minimization step: 2979. Total energy = 845.3282 kcal/mol (844.9356 without restraints) Performing minimization step: 2980. Total energy = 845.2965 kcal/mol (844.9042 without restraints) Performing minimization step: 2981. Total energy = 845.2650 kcal/mol (844.8726 without restraints) Performing minimization step: 2982. Total energy = 845.2335 kcal/mol (844.8413 without restraints) Performing minimization step: 2983. Total energy = 845.2016 kcal/mol (844.8095 without restraints) Performing minimization step: 2984. Total energy = 845.1700 kcal/mol (844.7780 without restraints) Performing minimization step: 2985. Total energy = 845.1384 kcal/mol (844.7465 without restraints) Performing minimization step: 2986. Total energy = 845.1068 kcal/mol (844.7150 without restraints) Performing minimization step: 2987. Total energy = 845.0753 kcal/mol (844.6835 without restraints) Performing minimization step: 2988. Total energy = 845.0434 kcal/mol (844.6517 without restraints) Performing minimization step: 2989. Total energy = 845.0119 kcal/mol (844.6203 without restraints) Performing minimization step: 2990. Total energy = 844.9803 kcal/mol (844.5888 without restraints) Performing minimization step: 2991. Total energy = 844.9488 kcal/mol (844.5574 without restraints) Performing minimization step: 2992. Total energy = 844.9178 kcal/mol (844.5266 without restraints) Performing minimization step: 2993. Total energy = 844.8864 kcal/mol (844.4952 without restraints) Performing minimization step: 2994. Total energy = 844.8546 kcal/mol (844.4635 without restraints) Performing minimization step: 2995. Total energy = 844.8234 kcal/mol (844.4324 without restraints) Performing minimization step: 2996. Total energy = 844.7920 kcal/mol (844.4011 without restraints) Performing minimization step: 2997. Total energy = 844.7608 kcal/mol (844.3700 without restraints) Performing minimization step: 2998. Total energy = 844.7295 kcal/mol (844.3387 without restraints) Performing minimization step: 2999. Total energy = 844.6983 kcal/mol (844.3077 without restraints) Performing minimization step: 3000. Total energy = 844.6670 kcal/mol (844.2765 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 844.6358 kcal/mol (844.2453 without restraints) Performing minimization step: 3002. Total energy = 844.6046 kcal/mol (844.2141 without restraints) Performing minimization step: 3003. Total energy = 844.5732 kcal/mol (844.1830 without restraints) Performing minimization step: 3004. Total energy = 844.5420 kcal/mol (844.1518 without restraints) Performing minimization step: 3005. Total energy = 844.5110 kcal/mol (844.1210 without restraints) Performing minimization step: 3006. Total energy = 844.4799 kcal/mol (844.0899 without restraints) Performing minimization step: 3007. Total energy = 844.4490 kcal/mol (844.0591 without restraints) Performing minimization step: 3008. Total energy = 844.4178 kcal/mol (844.0280 without restraints) Performing minimization step: 3009. Total energy = 844.3868 kcal/mol (843.9971 without restraints) Performing minimization step: 3010. Total energy = 844.3557 kcal/mol (843.9661 without restraints) Performing minimization step: 3011. Total energy = 844.3248 kcal/mol (843.9353 without restraints) Performing minimization step: 3012. Total energy = 844.2936 kcal/mol (843.9042 without restraints) Performing minimization step: 3013. Total energy = 844.2626 kcal/mol (843.8733 without restraints) Performing minimization step: 3014. Total energy = 844.2315 kcal/mol (843.8423 without restraints) Performing minimization step: 3015. Total energy = 844.2006 kcal/mol (843.8114 without restraints) Performing minimization step: 3016. Total energy = 844.1696 kcal/mol (843.7808 without restraints) Performing minimization step: 3017. Total energy = 844.1388 kcal/mol (843.7499 without restraints) Performing minimization step: 3018. Total energy = 844.1079 kcal/mol (843.7190 without restraints) Performing minimization step: 3019. Total energy = 844.0769 kcal/mol (843.6881 without restraints) Performing minimization step: 3020. Total energy = 844.0460 kcal/mol (843.6572 without restraints) Performing minimization step: 3021. Total energy = 844.0151 kcal/mol (843.6265 without restraints) Performing minimization step: 3022. Total energy = 843.9842 kcal/mol (843.5957 without restraints) Performing minimization step: 3023. Total energy = 843.9531 kcal/mol (843.5647 without restraints) Performing minimization step: 3024. Total energy = 843.9228 kcal/mol (843.5346 without restraints) Performing minimization step: 3025. Total energy = 843.8920 kcal/mol (843.5038 without restraints) Performing minimization step: 3026. Total energy = 843.8614 kcal/mol (843.4732 without restraints) Performing minimization step: 3027. Total energy = 843.8303 kcal/mol (843.4423 without restraints) Performing minimization step: 3028. Total energy = 843.7995 kcal/mol (843.4116 without restraints) Performing minimization step: 3029. Total energy = 843.7692 kcal/mol (843.3813 without restraints) Performing minimization step: 3030. Total energy = 843.7384 kcal/mol (843.3506 without restraints) Performing minimization step: 3031. Total energy = 843.7076 kcal/mol (843.3200 without restraints) Performing minimization step: 3032. Total energy = 843.6769 kcal/mol (843.2894 without restraints) Performing minimization step: 3033. Total energy = 843.6466 kcal/mol (843.2590 without restraints) Performing minimization step: 3034. Total energy = 843.6158 kcal/mol (843.2284 without restraints) Performing minimization step: 3035. Total energy = 843.5851 kcal/mol (843.1978 without restraints) Performing minimization step: 3036. Total energy = 843.5542 kcal/mol (843.1670 without restraints) Performing minimization step: 3037. Total energy = 843.5236 kcal/mol (843.1365 without restraints) Performing minimization step: 3038. Total energy = 843.4933 kcal/mol (843.1064 without restraints) Performing minimization step: 3039. Total energy = 843.4628 kcal/mol (843.0759 without restraints) Performing minimization step: 3040. Total energy = 843.4323 kcal/mol (843.0456 without restraints) Performing minimization step: 3041. Total energy = 843.4019 kcal/mol (843.0152 without restraints) Performing minimization step: 3042. Total energy = 843.3713 kcal/mol (842.9847 without restraints) Performing minimization step: 3043. Total energy = 843.3408 kcal/mol (842.9542 without restraints) Performing minimization step: 3044. Total energy = 843.3106 kcal/mol (842.9242 without restraints) Performing minimization step: 3045. Total energy = 843.2802 kcal/mol (842.8939 without restraints) Performing minimization step: 3046. Total energy = 843.2498 kcal/mol (842.8635 without restraints) Performing minimization step: 3047. Total energy = 843.2193 kcal/mol (842.8332 without restraints) Performing minimization step: 3048. Total energy = 843.1889 kcal/mol (842.8029 without restraints) Performing minimization step: 3049. Total energy = 843.1587 kcal/mol (842.7728 without restraints) Performing minimization step: 3050. Total energy = 843.1283 kcal/mol (842.7425 without restraints) Performing minimization step: 3051. Total energy = 843.0979 kcal/mol (842.7122 without restraints) Performing minimization step: 3052. Total energy = 843.0676 kcal/mol (842.6819 without restraints) Performing minimization step: 3053. Total energy = 843.0372 kcal/mol (842.6517 without restraints) Performing minimization step: 3054. Total energy = 843.0069 kcal/mol (842.6214 without restraints) Performing minimization step: 3055. Total energy = 842.9766 kcal/mol (842.5912 without restraints) Performing minimization step: 3056. Total energy = 842.9463 kcal/mol (842.5610 without restraints) Performing minimization step: 3057. Total energy = 842.9161 kcal/mol (842.5309 without restraints) Performing minimization step: 3058. Total energy = 842.8861 kcal/mol (842.5011 without restraints) Performing minimization step: 3059. Total energy = 842.8559 kcal/mol (842.4709 without restraints) Performing minimization step: 3060. Total energy = 842.8255 kcal/mol (842.4404 without restraints) Performing minimization step: 3061. Total energy = 842.7951 kcal/mol (842.4103 without restraints) Performing minimization step: 3062. Total energy = 842.7651 kcal/mol (842.3804 without restraints) Performing minimization step: 3063. Total energy = 842.7354 kcal/mol (842.3507 without restraints) Performing minimization step: 3064. Total energy = 842.7052 kcal/mol (842.3207 without restraints) Performing minimization step: 3065. Total energy = 842.6751 kcal/mol (842.2907 without restraints) Performing minimization step: 3066. Total energy = 842.6450 kcal/mol (842.2606 without restraints) Performing minimization step: 3067. Total energy = 842.6151 kcal/mol (842.2310 without restraints) Performing minimization step: 3068. Total energy = 842.5852 kcal/mol (842.2010 without restraints) Performing minimization step: 3069. Total energy = 842.5552 kcal/mol (842.1712 without restraints) Performing minimization step: 3070. Total energy = 842.5256 kcal/mol (842.1417 without restraints) Performing minimization step: 3071. Total energy = 842.4954 kcal/mol (842.1115 without restraints) Performing minimization step: 3072. Total energy = 842.4653 kcal/mol (842.0814 without restraints) Performing minimization step: 3073. Total energy = 842.4354 kcal/mol (842.0517 without restraints) Performing minimization step: 3074. Total energy = 842.4054 kcal/mol (842.0218 without restraints) Performing minimization step: 3075. Total energy = 842.3753 kcal/mol (841.9917 without restraints) Performing minimization step: 3076. Total energy = 842.3453 kcal/mol (841.9619 without restraints) Performing minimization step: 3077. Total energy = 842.3154 kcal/mol (841.9322 without restraints) Performing minimization step: 3078. Total energy = 842.2856 kcal/mol (841.9024 without restraints) Performing minimization step: 3079. Total energy = 842.2555 kcal/mol (841.8724 without restraints) Performing minimization step: 3080. Total energy = 842.2256 kcal/mol (841.8426 without restraints) Performing minimization step: 3081. Total energy = 842.1955 kcal/mol (841.8126 without restraints) Performing minimization step: 3082. Total energy = 842.1659 kcal/mol (841.7832 without restraints) Performing minimization step: 3083. Total energy = 842.1362 kcal/mol (841.7535 without restraints) Performing minimization step: 3084. Total energy = 842.1066 kcal/mol (841.7240 without restraints) Performing minimization step: 3085. Total energy = 842.0770 kcal/mol (841.6945 without restraints) Performing minimization step: 3086. Total energy = 842.0473 kcal/mol (841.6648 without restraints) Performing minimization step: 3087. Total energy = 842.0175 kcal/mol (841.6351 without restraints) Performing minimization step: 3088. Total energy = 841.9879 kcal/mol (841.6057 without restraints) Performing minimization step: 3089. Total energy = 841.9582 kcal/mol (841.5760 without restraints) Performing minimization step: 3090. Total energy = 841.9288 kcal/mol (841.5467 without restraints) Performing minimization step: 3091. Total energy = 841.8993 kcal/mol (841.5173 without restraints) Performing minimization step: 3092. Total energy = 841.8698 kcal/mol (841.4879 without restraints) Performing minimization step: 3093. Total energy = 841.8402 kcal/mol (841.4584 without restraints) Performing minimization step: 3094. Total energy = 841.8106 kcal/mol (841.4289 without restraints) Performing minimization step: 3095. Total energy = 841.7809 kcal/mol (841.3993 without restraints) Performing minimization step: 3096. Total energy = 841.7513 kcal/mol (841.3698 without restraints) Performing minimization step: 3097. Total energy = 841.7221 kcal/mol (841.3411 without restraints) Performing minimization step: 3098. Total energy = 841.6929 kcal/mol (841.3116 without restraints) Performing minimization step: 3099. Total energy = 841.6633 kcal/mol (841.2821 without restraints) Performing minimization step: 3100. Total energy = 841.6338 kcal/mol (841.2526 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 841.6042 kcal/mol (841.2232 without restraints) Performing minimization step: 3102. Total energy = 841.5747 kcal/mol (841.1938 without restraints) Performing minimization step: 3103. Total energy = 841.5452 kcal/mol (841.1644 without restraints) Performing minimization step: 3104. Total energy = 841.5156 kcal/mol (841.1348 without restraints) Performing minimization step: 3105. Total energy = 841.4861 kcal/mol (841.1054 without restraints) Performing minimization step: 3106. Total energy = 841.4566 kcal/mol (841.0761 without restraints) Performing minimization step: 3107. Total energy = 841.4273 kcal/mol (841.0469 without restraints) Performing minimization step: 3108. Total energy = 841.3980 kcal/mol (841.0176 without restraints) Performing minimization step: 3109. Total energy = 841.3688 kcal/mol (840.9886 without restraints) Performing minimization step: 3110. Total energy = 841.3394 kcal/mol (840.9593 without restraints) Performing minimization step: 3111. Total energy = 841.3101 kcal/mol (840.9300 without restraints) Performing minimization step: 3112. Total energy = 841.2808 kcal/mol (840.9008 without restraints) Performing minimization step: 3113. Total energy = 841.2515 kcal/mol (840.8717 without restraints) Performing minimization step: 3114. Total energy = 841.2223 kcal/mol (840.8425 without restraints) Performing minimization step: 3115. Total energy = 841.1926 kcal/mol (840.8128 without restraints) Performing minimization step: 3116. Total energy = 841.1631 kcal/mol (840.7836 without restraints) Performing minimization step: 3117. Total energy = 841.1339 kcal/mol (840.7544 without restraints) Performing minimization step: 3118. Total energy = 841.1042 kcal/mol (840.7248 without restraints) Performing minimization step: 3119. Total energy = 841.0750 kcal/mol (840.6957 without restraints) Performing minimization step: 3120. Total energy = 841.0458 kcal/mol (840.6666 without restraints) Performing minimization step: 3121. Total energy = 841.0167 kcal/mol (840.6376 without restraints) Performing minimization step: 3122. Total energy = 840.9874 kcal/mol (840.6085 without restraints) Performing minimization step: 3123. Total energy = 840.9584 kcal/mol (840.5794 without restraints) Performing minimization step: 3124. Total energy = 840.9291 kcal/mol (840.5502 without restraints) Performing minimization step: 3125. Total energy = 840.8998 kcal/mol (840.5210 without restraints) Performing minimization step: 3126. Total energy = 840.8708 kcal/mol (840.4921 without restraints) Performing minimization step: 3127. Total energy = 840.8415 kcal/mol (840.4629 without restraints) Performing minimization step: 3128. Total energy = 840.8127 kcal/mol (840.4342 without restraints) Performing minimization step: 3129. Total energy = 840.7836 kcal/mol (840.4053 without restraints) Performing minimization step: 3130. Total energy = 840.7545 kcal/mol (840.3762 without restraints) Performing minimization step: 3131. Total energy = 840.7254 kcal/mol (840.3473 without restraints) Performing minimization step: 3132. Total energy = 840.6962 kcal/mol (840.3181 without restraints) Performing minimization step: 3133. Total energy = 840.6672 kcal/mol (840.2892 without restraints) Performing minimization step: 3134. Total energy = 840.6382 kcal/mol (840.2603 without restraints) Performing minimization step: 3135. Total energy = 840.6092 kcal/mol (840.2314 without restraints) Performing minimization step: 3136. Total energy = 840.5802 kcal/mol (840.2025 without restraints) Performing minimization step: 3137. Total energy = 840.5513 kcal/mol (840.1737 without restraints) Performing minimization step: 3138. Total energy = 840.5225 kcal/mol (840.1452 without restraints) Performing minimization step: 3139. Total energy = 840.4938 kcal/mol (840.1164 without restraints) Performing minimization step: 3140. Total energy = 840.4650 kcal/mol (840.0877 without restraints) Performing minimization step: 3141. Total energy = 840.4361 kcal/mol (840.0589 without restraints) Performing minimization step: 3142. Total energy = 840.4076 kcal/mol (840.0305 without restraints) Performing minimization step: 3143. Total energy = 840.3790 kcal/mol (840.0020 without restraints) Performing minimization step: 3144. Total energy = 840.3503 kcal/mol (839.9734 without restraints) Performing minimization step: 3145. Total energy = 840.3218 kcal/mol (839.9450 without restraints) Performing minimization step: 3146. Total energy = 840.2930 kcal/mol (839.9163 without restraints) Performing minimization step: 3147. Total energy = 840.2642 kcal/mol (839.8875 without restraints) Performing minimization step: 3148. Total energy = 840.2354 kcal/mol (839.8589 without restraints) Performing minimization step: 3149. Total energy = 840.2066 kcal/mol (839.8302 without restraints) Performing minimization step: 3150. Total energy = 840.1779 kcal/mol (839.8015 without restraints) Performing minimization step: 3151. Total energy = 840.1491 kcal/mol (839.7729 without restraints) Performing minimization step: 3152. Total energy = 840.1203 kcal/mol (839.7442 without restraints) Performing minimization step: 3153. Total energy = 840.0916 kcal/mol (839.7156 without restraints) Performing minimization step: 3154. Total energy = 840.0629 kcal/mol (839.6870 without restraints) Performing minimization step: 3155. Total energy = 840.0344 kcal/mol (839.6585 without restraints) Performing minimization step: 3156. Total energy = 840.0062 kcal/mol (839.6304 without restraints) Performing minimization step: 3157. Total energy = 839.9775 kcal/mol (839.6018 without restraints) Performing minimization step: 3158. Total energy = 839.9489 kcal/mol (839.5733 without restraints) Performing minimization step: 3159. Total energy = 839.9202 kcal/mol (839.5447 without restraints) Performing minimization step: 3160. Total energy = 839.8914 kcal/mol (839.5160 without restraints) Performing minimization step: 3161. Total energy = 839.8628 kcal/mol (839.4875 without restraints) Performing minimization step: 3162. Total energy = 839.8342 kcal/mol (839.4590 without restraints) Performing minimization step: 3163. Total energy = 839.8057 kcal/mol (839.4306 without restraints) Performing minimization step: 3164. Total energy = 839.7771 kcal/mol (839.4022 without restraints) Performing minimization step: 3165. Total energy = 839.7489 kcal/mol (839.3740 without restraints) Performing minimization step: 3166. Total energy = 839.7204 kcal/mol (839.3456 without restraints) Performing minimization step: 3167. Total energy = 839.6921 kcal/mol (839.3174 without restraints) Performing minimization step: 3168. Total energy = 839.6636 kcal/mol (839.2890 without restraints) Performing minimization step: 3169. Total energy = 839.6354 kcal/mol (839.2608 without restraints) Performing minimization step: 3170. Total energy = 839.6069 kcal/mol (839.2325 without restraints) Performing minimization step: 3171. Total energy = 839.5785 kcal/mol (839.2042 without restraints) Performing minimization step: 3172. Total energy = 839.5501 kcal/mol (839.1758 without restraints) Performing minimization step: 3173. Total energy = 839.5216 kcal/mol (839.1475 without restraints) Performing minimization step: 3174. Total energy = 839.4938 kcal/mol (839.1198 without restraints) Performing minimization step: 3175. Total energy = 839.4654 kcal/mol (839.0915 without restraints) Performing minimization step: 3176. Total energy = 839.4370 kcal/mol (839.0632 without restraints) Performing minimization step: 3177. Total energy = 839.4087 kcal/mol (839.0349 without restraints) Performing minimization step: 3178. Total energy = 839.3803 kcal/mol (839.0067 without restraints) Performing minimization step: 3179. Total energy = 839.3524 kcal/mol (838.9787 without restraints) Performing minimization step: 3180. Total energy = 839.3240 kcal/mol (838.9505 without restraints) Performing minimization step: 3181. Total energy = 839.2957 kcal/mol (838.9223 without restraints) Performing minimization step: 3182. Total energy = 839.2674 kcal/mol (838.8941 without restraints) Performing minimization step: 3183. Total energy = 839.2391 kcal/mol (838.8660 without restraints) Performing minimization step: 3184. Total energy = 839.2109 kcal/mol (838.8378 without restraints) Performing minimization step: 3185. Total energy = 839.1827 kcal/mol (838.8097 without restraints) Performing minimization step: 3186. Total energy = 839.1544 kcal/mol (838.7815 without restraints) Performing minimization step: 3187. Total energy = 839.1265 kcal/mol (838.7537 without restraints) Performing minimization step: 3188. Total energy = 839.0982 kcal/mol (838.7254 without restraints) Performing minimization step: 3189. Total energy = 839.0699 kcal/mol (838.6973 without restraints) Performing minimization step: 3190. Total energy = 839.0416 kcal/mol (838.6692 without restraints) Performing minimization step: 3191. Total energy = 839.0135 kcal/mol (838.6411 without restraints) Performing minimization step: 3192. Total energy = 838.9855 kcal/mol (838.6133 without restraints) Performing minimization step: 3193. Total energy = 838.9575 kcal/mol (838.5853 without restraints) Performing minimization step: 3194. Total energy = 838.9293 kcal/mol (838.5571 without restraints) Performing minimization step: 3195. Total energy = 838.9011 kcal/mol (838.5290 without restraints) Performing minimization step: 3196. Total energy = 838.8729 kcal/mol (838.5010 without restraints) Performing minimization step: 3197. Total energy = 838.8448 kcal/mol (838.4730 without restraints) Performing minimization step: 3198. Total energy = 838.8168 kcal/mol (838.4450 without restraints) Performing minimization step: 3199. Total energy = 838.7886 kcal/mol (838.4170 without restraints) Performing minimization step: 3200. Total energy = 838.7608 kcal/mol (838.3892 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 838.7325 kcal/mol (838.3610 without restraints) Performing minimization step: 3202. Total energy = 838.7047 kcal/mol (838.3333 without restraints) Performing minimization step: 3203. Total energy = 838.6767 kcal/mol (838.3054 without restraints) Performing minimization step: 3204. Total energy = 838.6487 kcal/mol (838.2775 without restraints) Performing minimization step: 3205. Total energy = 838.6207 kcal/mol (838.2496 without restraints) Performing minimization step: 3206. Total energy = 838.5928 kcal/mol (838.2218 without restraints) Performing minimization step: 3207. Total energy = 838.5649 kcal/mol (838.1940 without restraints) Performing minimization step: 3208. Total energy = 838.5367 kcal/mol (838.1659 without restraints) Performing minimization step: 3209. Total energy = 838.5089 kcal/mol (838.1383 without restraints) Performing minimization step: 3210. Total energy = 838.4811 kcal/mol (838.1105 without restraints) Performing minimization step: 3211. Total energy = 838.4531 kcal/mol (838.0825 without restraints) Performing minimization step: 3212. Total energy = 838.4252 kcal/mol (838.0548 without restraints) Performing minimization step: 3213. Total energy = 838.3973 kcal/mol (838.0270 without restraints) Performing minimization step: 3214. Total energy = 838.3696 kcal/mol (837.9993 without restraints) Performing minimization step: 3215. Total energy = 838.3417 kcal/mol (837.9716 without restraints) Performing minimization step: 3216. Total energy = 838.3140 kcal/mol (837.9441 without restraints) Performing minimization step: 3217. Total energy = 838.2863 kcal/mol (837.9163 without restraints) Performing minimization step: 3218. Total energy = 838.2583 kcal/mol (837.8885 without restraints) Performing minimization step: 3219. Total energy = 838.2306 kcal/mol (837.8608 without restraints) Performing minimization step: 3220. Total energy = 838.2030 kcal/mol (837.8334 without restraints) Performing minimization step: 3221. Total energy = 838.1753 kcal/mol (837.8057 without restraints) Performing minimization step: 3222. Total energy = 838.1475 kcal/mol (837.7781 without restraints) Performing minimization step: 3223. Total energy = 838.1198 kcal/mol (837.7504 without restraints) Performing minimization step: 3224. Total energy = 838.0923 kcal/mol (837.7230 without restraints) Performing minimization step: 3225. Total energy = 838.0646 kcal/mol (837.6954 without restraints) Performing minimization step: 3226. Total energy = 838.0369 kcal/mol (837.6678 without restraints) Performing minimization step: 3227. Total energy = 838.0093 kcal/mol (837.6404 without restraints) Performing minimization step: 3228. Total energy = 837.9818 kcal/mol (837.6129 without restraints) Performing minimization step: 3229. Total energy = 837.9543 kcal/mol (837.5855 without restraints) Performing minimization step: 3230. Total energy = 837.9267 kcal/mol (837.5580 without restraints) Performing minimization step: 3231. Total energy = 837.8992 kcal/mol (837.5306 without restraints) Performing minimization step: 3232. Total energy = 837.8717 kcal/mol (837.5032 without restraints) Performing minimization step: 3233. Total energy = 837.8441 kcal/mol (837.4757 without restraints) Performing minimization step: 3234. Total energy = 837.8166 kcal/mol (837.4483 without restraints) Performing minimization step: 3235. Total energy = 837.7890 kcal/mol (837.4208 without restraints) Performing minimization step: 3236. Total energy = 837.7614 kcal/mol (837.3933 without restraints) Performing minimization step: 3237. Total energy = 837.7341 kcal/mol (837.3661 without restraints) Performing minimization step: 3238. Total energy = 837.7066 kcal/mol (837.3387 without restraints) Performing minimization step: 3239. Total energy = 837.6791 kcal/mol (837.3112 without restraints) Performing minimization step: 3240. Total energy = 837.6514 kcal/mol (837.2836 without restraints) Performing minimization step: 3241. Total energy = 837.6239 kcal/mol (837.2562 without restraints) Performing minimization step: 3242. Total energy = 837.5965 kcal/mol (837.2289 without restraints) Performing minimization step: 3243. Total energy = 837.5691 kcal/mol (837.2017 without restraints) Performing minimization step: 3244. Total energy = 837.5417 kcal/mol (837.1744 without restraints) Performing minimization step: 3245. Total energy = 837.5143 kcal/mol (837.1470 without restraints) Performing minimization step: 3246. Total energy = 837.4869 kcal/mol (837.1197 without restraints) Performing minimization step: 3247. Total energy = 837.4597 kcal/mol (837.0926 without restraints) Performing minimization step: 3248. Total energy = 837.4323 kcal/mol (837.0653 without restraints) Performing minimization step: 3249. Total energy = 837.4050 kcal/mol (837.0382 without restraints) Performing minimization step: 3250. Total energy = 837.3777 kcal/mol (837.0109 without restraints) Performing minimization step: 3251. Total energy = 837.3504 kcal/mol (836.9837 without restraints) Performing minimization step: 3252. Total energy = 837.3232 kcal/mol (836.9566 without restraints) Performing minimization step: 3253. Total energy = 837.2960 kcal/mol (836.9295 without restraints) Performing minimization step: 3254. Total energy = 837.2687 kcal/mol (836.9023 without restraints) Performing minimization step: 3255. Total energy = 837.2414 kcal/mol (836.8751 without restraints) Performing minimization step: 3256. Total energy = 837.2141 kcal/mol (836.8479 without restraints) Performing minimization step: 3257. Total energy = 837.1868 kcal/mol (836.8207 without restraints) Performing minimization step: 3258. Total energy = 837.1595 kcal/mol (836.7935 without restraints) Performing minimization step: 3259. Total energy = 837.1325 kcal/mol (836.7666 without restraints) Performing minimization step: 3260. Total energy = 837.1052 kcal/mol (836.7394 without restraints) Performing minimization step: 3261. Total energy = 837.0781 kcal/mol (836.7125 without restraints) Performing minimization step: 3262. Total energy = 837.0510 kcal/mol (836.6853 without restraints) Performing minimization step: 3263. Total energy = 837.0238 kcal/mol (836.6582 without restraints) Performing minimization step: 3264. Total energy = 836.9966 kcal/mol (836.6311 without restraints) Performing minimization step: 3265. Total energy = 836.9694 kcal/mol (836.6041 without restraints) Performing minimization step: 3266. Total energy = 836.9422 kcal/mol (836.5770 without restraints) Performing minimization step: 3267. Total energy = 836.9151 kcal/mol (836.5499 without restraints) Performing minimization step: 3268. Total energy = 836.8879 kcal/mol (836.5228 without restraints) Performing minimization step: 3269. Total energy = 836.8608 kcal/mol (836.4958 without restraints) Performing minimization step: 3270. Total energy = 836.8336 kcal/mol (836.4686 without restraints) Performing minimization step: 3271. Total energy = 836.8068 kcal/mol (836.4420 without restraints) Performing minimization step: 3272. Total energy = 836.7801 kcal/mol (836.4154 without restraints) Performing minimization step: 3273. Total energy = 836.7533 kcal/mol (836.3887 without restraints) Performing minimization step: 3274. Total energy = 836.7265 kcal/mol (836.3620 without restraints) Performing minimization step: 3275. Total energy = 836.6994 kcal/mol (836.3350 without restraints) Performing minimization step: 3276. Total energy = 836.6723 kcal/mol (836.3080 without restraints) Performing minimization step: 3277. Total energy = 836.6452 kcal/mol (836.2810 without restraints) Performing minimization step: 3278. Total energy = 836.6182 kcal/mol (836.2541 without restraints) Performing minimization step: 3279. Total energy = 836.5912 kcal/mol (836.2272 without restraints) Performing minimization step: 3280. Total energy = 836.5642 kcal/mol (836.2002 without restraints) Performing minimization step: 3281. Total energy = 836.5372 kcal/mol (836.1733 without restraints) Performing minimization step: 3282. Total energy = 836.5102 kcal/mol (836.1464 without restraints) Performing minimization step: 3283. Total energy = 836.4833 kcal/mol (836.1198 without restraints) Performing minimization step: 3284. Total energy = 836.4568 kcal/mol (836.0933 without restraints) Performing minimization step: 3285. Total energy = 836.4300 kcal/mol (836.0665 without restraints) Performing minimization step: 3286. Total energy = 836.4029 kcal/mol (836.0395 without restraints) Performing minimization step: 3287. Total energy = 836.3759 kcal/mol (836.0126 without restraints) Performing minimization step: 3288. Total energy = 836.3490 kcal/mol (835.9858 without restraints) Performing minimization step: 3289. Total energy = 836.3220 kcal/mol (835.9590 without restraints) Performing minimization step: 3290. Total energy = 836.2952 kcal/mol (835.9322 without restraints) Performing minimization step: 3291. Total energy = 836.2683 kcal/mol (835.9054 without restraints) Performing minimization step: 3292. Total energy = 836.2415 kcal/mol (835.8787 without restraints) Performing minimization step: 3293. Total energy = 836.2146 kcal/mol (835.8519 without restraints) Performing minimization step: 3294. Total energy = 836.1878 kcal/mol (835.8251 without restraints) Performing minimization step: 3295. Total energy = 836.1609 kcal/mol (835.7984 without restraints) Performing minimization step: 3296. Total energy = 836.1341 kcal/mol (835.7717 without restraints) Performing minimization step: 3297. Total energy = 836.1073 kcal/mol (835.7450 without restraints) Performing minimization step: 3298. Total energy = 836.0807 kcal/mol (835.7185 without restraints) Performing minimization step: 3299. Total energy = 836.0539 kcal/mol (835.6918 without restraints) Performing minimization step: 3300. Total energy = 836.0271 kcal/mol (835.6651 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 836.0005 kcal/mol (835.6387 without restraints) Performing minimization step: 3302. Total energy = 835.9741 kcal/mol (835.6122 without restraints) Performing minimization step: 3303. Total energy = 835.9476 kcal/mol (835.5858 without restraints) Performing minimization step: 3304. Total energy = 835.9204 kcal/mol (835.5588 without restraints) Performing minimization step: 3305. Total energy = 835.8937 kcal/mol (835.5321 without restraints) Performing minimization step: 3306. Total energy = 835.8663 kcal/mol (835.5047 without restraints) Performing minimization step: 3307. Total energy = 835.8392 kcal/mol (835.4779 without restraints) Performing minimization step: 3308. Total energy = 835.8129 kcal/mol (835.4516 without restraints) Performing minimization step: 3309. Total energy = 835.7863 kcal/mol (835.4251 without restraints) Performing minimization step: 3310. Total energy = 835.7596 kcal/mol (835.3985 without restraints) Performing minimization step: 3311. Total energy = 835.7329 kcal/mol (835.3719 without restraints) Performing minimization step: 3312. Total energy = 835.7063 kcal/mol (835.3454 without restraints) Performing minimization step: 3313. Total energy = 835.6801 kcal/mol (835.3193 without restraints) Performing minimization step: 3314. Total energy = 835.6536 kcal/mol (835.2929 without restraints) Performing minimization step: 3315. Total energy = 835.6270 kcal/mol (835.2664 without restraints) Performing minimization step: 3316. Total energy = 835.6006 kcal/mol (835.2401 without restraints) Performing minimization step: 3317. Total energy = 835.5740 kcal/mol (835.2136 without restraints) Performing minimization step: 3318. Total energy = 835.5475 kcal/mol (835.1871 without restraints) Performing minimization step: 3319. Total energy = 835.5209 kcal/mol (835.1606 without restraints) Performing minimization step: 3320. Total energy = 835.4944 kcal/mol (835.1342 without restraints) Performing minimization step: 3321. Total energy = 835.4678 kcal/mol (835.1078 without restraints) Performing minimization step: 3322. Total energy = 835.4413 kcal/mol (835.0814 without restraints) Performing minimization step: 3323. Total energy = 835.4151 kcal/mol (835.0554 without restraints) Performing minimization step: 3324. Total energy = 835.3888 kcal/mol (835.0290 without restraints) Performing minimization step: 3325. Total energy = 835.3623 kcal/mol (835.0026 without restraints) Performing minimization step: 3326. Total energy = 835.3358 kcal/mol (834.9762 without restraints) Performing minimization step: 3327. Total energy = 835.3093 kcal/mol (834.9498 without restraints) Performing minimization step: 3328. Total energy = 835.2828 kcal/mol (834.9235 without restraints) Performing minimization step: 3329. Total energy = 835.2564 kcal/mol (834.8971 without restraints) Performing minimization step: 3330. Total energy = 835.2299 kcal/mol (834.8707 without restraints) Performing minimization step: 3331. Total energy = 835.2036 kcal/mol (834.8446 without restraints) Performing minimization step: 3332. Total energy = 835.1772 kcal/mol (834.8182 without restraints) Performing minimization step: 3333. Total energy = 835.1508 kcal/mol (834.7919 without restraints) Performing minimization step: 3334. Total energy = 835.1244 kcal/mol (834.7656 without restraints) Performing minimization step: 3335. Total energy = 835.0984 kcal/mol (834.7397 without restraints) Performing minimization step: 3336. Total energy = 835.0720 kcal/mol (834.7134 without restraints) Performing minimization step: 3337. Total energy = 835.0456 kcal/mol (834.6871 without restraints) Performing minimization step: 3338. Total energy = 835.0193 kcal/mol (834.6608 without restraints) Performing minimization step: 3339. Total energy = 834.9929 kcal/mol (834.6346 without restraints) Performing minimization step: 3340. Total energy = 834.9666 kcal/mol (834.6083 without restraints) Performing minimization step: 3341. Total energy = 834.9405 kcal/mol (834.5824 without restraints) Performing minimization step: 3342. Total energy = 834.9144 kcal/mol (834.5563 without restraints) Performing minimization step: 3343. Total energy = 834.8881 kcal/mol (834.5301 without restraints) Performing minimization step: 3344. Total energy = 834.8620 kcal/mol (834.5041 without restraints) Performing minimization step: 3345. Total energy = 834.8356 kcal/mol (834.4779 without restraints) Performing minimization step: 3346. Total energy = 834.8094 kcal/mol (834.4517 without restraints) Performing minimization step: 3347. Total energy = 834.7831 kcal/mol (834.4255 without restraints) Performing minimization step: 3348. Total energy = 834.7569 kcal/mol (834.3994 without restraints) Performing minimization step: 3349. Total energy = 834.7309 kcal/mol (834.3734 without restraints) Performing minimization step: 3350. Total energy = 834.7048 kcal/mol (834.3475 without restraints) Performing minimization step: 3351. Total energy = 834.6787 kcal/mol (834.3216 without restraints) Performing minimization step: 3352. Total energy = 834.6527 kcal/mol (834.2957 without restraints) Performing minimization step: 3353. Total energy = 834.6266 kcal/mol (834.2696 without restraints) Performing minimization step: 3354. Total energy = 834.6004 kcal/mol (834.2434 without restraints) Performing minimization step: 3355. Total energy = 834.5742 kcal/mol (834.2174 without restraints) Performing minimization step: 3356. Total energy = 834.5480 kcal/mol (834.1913 without restraints) Performing minimization step: 3357. Total energy = 834.5216 kcal/mol (834.1650 without restraints) Performing minimization step: 3358. Total energy = 834.4955 kcal/mol (834.1389 without restraints) Performing minimization step: 3359. Total energy = 834.4695 kcal/mol (834.1131 without restraints) Performing minimization step: 3360. Total energy = 834.4434 kcal/mol (834.0870 without restraints) Performing minimization step: 3361. Total energy = 834.4177 kcal/mol (834.0616 without restraints) Performing minimization step: 3362. Total energy = 834.3918 kcal/mol (834.0356 without restraints) Performing minimization step: 3363. Total energy = 834.3657 kcal/mol (834.0096 without restraints) Performing minimization step: 3364. Total energy = 834.3396 kcal/mol (833.9836 without restraints) Performing minimization step: 3365. Total energy = 834.3131 kcal/mol (833.9572 without restraints) Performing minimization step: 3366. Total energy = 834.2872 kcal/mol (833.9314 without restraints) Performing minimization step: 3367. Total energy = 834.2613 kcal/mol (833.9055 without restraints) Performing minimization step: 3368. Total energy = 834.2352 kcal/mol (833.8795 without restraints) Performing minimization step: 3369. Total energy = 834.2091 kcal/mol (833.8536 without restraints) Performing minimization step: 3370. Total energy = 834.1831 kcal/mol (833.8277 without restraints) Performing minimization step: 3371. Total energy = 834.1573 kcal/mol (833.8020 without restraints) Performing minimization step: 3372. Total energy = 834.1313 kcal/mol (833.7761 without restraints) Performing minimization step: 3373. Total energy = 834.1053 kcal/mol (833.7501 without restraints) Performing minimization step: 3374. Total energy = 834.0793 kcal/mol (833.7242 without restraints) Performing minimization step: 3375. Total energy = 834.0533 kcal/mol (833.6983 without restraints) Performing minimization step: 3376. Total energy = 834.0273 kcal/mol (833.6724 without restraints) Performing minimization step: 3377. Total energy = 834.0014 kcal/mol (833.6466 without restraints) Performing minimization step: 3378. Total energy = 833.9754 kcal/mol (833.6207 without restraints) Performing minimization step: 3379. Total energy = 833.9497 kcal/mol (833.5951 without restraints) Performing minimization step: 3380. Total energy = 833.9238 kcal/mol (833.5692 without restraints) Performing minimization step: 3381. Total energy = 833.8978 kcal/mol (833.5434 without restraints) Performing minimization step: 3382. Total energy = 833.8719 kcal/mol (833.5176 without restraints) Performing minimization step: 3383. Total energy = 833.8459 kcal/mol (833.4916 without restraints) Performing minimization step: 3384. Total energy = 833.8198 kcal/mol (833.4656 without restraints) Performing minimization step: 3385. Total energy = 833.7939 kcal/mol (833.4398 without restraints) Performing minimization step: 3386. Total energy = 833.7681 kcal/mol (833.4142 without restraints) Performing minimization step: 3387. Total energy = 833.7423 kcal/mol (833.3885 without restraints) Performing minimization step: 3388. Total energy = 833.7165 kcal/mol (833.3627 without restraints) Performing minimization step: 3389. Total energy = 833.6910 kcal/mol (833.3375 without restraints) Performing minimization step: 3390. Total energy = 833.6656 kcal/mol (833.3120 without restraints) Performing minimization step: 3391. Total energy = 833.6396 kcal/mol (833.2861 without restraints) Performing minimization step: 3392. Total energy = 833.6142 kcal/mol (833.2609 without restraints) Performing minimization step: 3393. Total energy = 833.5885 kcal/mol (833.2352 without restraints) Performing minimization step: 3394. Total energy = 833.5627 kcal/mol (833.2094 without restraints) Performing minimization step: 3395. Total energy = 833.5369 kcal/mol (833.1838 without restraints) Performing minimization step: 3396. Total energy = 833.5111 kcal/mol (833.1580 without restraints) Performing minimization step: 3397. Total energy = 833.4855 kcal/mol (833.1325 without restraints) Performing minimization step: 3398. Total energy = 833.4598 kcal/mol (833.1069 without restraints) Performing minimization step: 3399. Total energy = 833.4342 kcal/mol (833.0815 without restraints) Performing minimization step: 3400. Total energy = 833.4085 kcal/mol (833.0558 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 833.3827 kcal/mol (833.0301 without restraints) Performing minimization step: 3402. Total energy = 833.3570 kcal/mol (833.0045 without restraints) Performing minimization step: 3403. Total energy = 833.3313 kcal/mol (832.9789 without restraints) Performing minimization step: 3404. Total energy = 833.3055 kcal/mol (832.9533 without restraints) Performing minimization step: 3405. Total energy = 833.2798 kcal/mol (832.9276 without restraints) Performing minimization step: 3406. Total energy = 833.2542 kcal/mol (832.9020 without restraints) Performing minimization step: 3407. Total energy = 833.2284 kcal/mol (832.8764 without restraints) Performing minimization step: 3408. Total energy = 833.2027 kcal/mol (832.8508 without restraints) Performing minimization step: 3409. Total energy = 833.1774 kcal/mol (832.8256 without restraints) Performing minimization step: 3410. Total energy = 833.1518 kcal/mol (832.8000 without restraints) Performing minimization step: 3411. Total energy = 833.1262 kcal/mol (832.7745 without restraints) Performing minimization step: 3412. Total energy = 833.1005 kcal/mol (832.7490 without restraints) Performing minimization step: 3413. Total energy = 833.0749 kcal/mol (832.7234 without restraints) Performing minimization step: 3414. Total energy = 833.0493 kcal/mol (832.6979 without restraints) Performing minimization step: 3415. Total energy = 833.0237 kcal/mol (832.6725 without restraints) Performing minimization step: 3416. Total energy = 832.9982 kcal/mol (832.6470 without restraints) Performing minimization step: 3417. Total energy = 832.9726 kcal/mol (832.6214 without restraints) Performing minimization step: 3418. Total energy = 832.9469 kcal/mol (832.5959 without restraints) Performing minimization step: 3419. Total energy = 832.9214 kcal/mol (832.5705 without restraints) Performing minimization step: 3420. Total energy = 832.8959 kcal/mol (832.5451 without restraints) Performing minimization step: 3421. Total energy = 832.8705 kcal/mol (832.5197 without restraints) Performing minimization step: 3422. Total energy = 832.8449 kcal/mol (832.4943 without restraints) Performing minimization step: 3423. Total energy = 832.8194 kcal/mol (832.4689 without restraints) Performing minimization step: 3424. Total energy = 832.7939 kcal/mol (832.4434 without restraints) Performing minimization step: 3425. Total energy = 832.7684 kcal/mol (832.4180 without restraints) Performing minimization step: 3426. Total energy = 832.7431 kcal/mol (832.3928 without restraints) Performing minimization step: 3427. Total energy = 832.7176 kcal/mol (832.3674 without restraints) Performing minimization step: 3428. Total energy = 832.6923 kcal/mol (832.3422 without restraints) Performing minimization step: 3429. Total energy = 832.6669 kcal/mol (832.3169 without restraints) Performing minimization step: 3430. Total energy = 832.6414 kcal/mol (832.2915 without restraints) Performing minimization step: 3431. Total energy = 832.6160 kcal/mol (832.2662 without restraints) Performing minimization step: 3432. Total energy = 832.5905 kcal/mol (832.2408 without restraints) Performing minimization step: 3433. Total energy = 832.5651 kcal/mol (832.2154 without restraints) Performing minimization step: 3434. Total energy = 832.5396 kcal/mol (832.1901 without restraints) Performing minimization step: 3435. Total energy = 832.5139 kcal/mol (832.1645 without restraints) Performing minimization step: 3436. Total energy = 832.4885 kcal/mol (832.1392 without restraints) Performing minimization step: 3437. Total energy = 832.4631 kcal/mol (832.1139 without restraints) Performing minimization step: 3438. Total energy = 832.4377 kcal/mol (832.0886 without restraints) Performing minimization step: 3439. Total energy = 832.4124 kcal/mol (832.0633 without restraints) Performing minimization step: 3440. Total energy = 832.3873 kcal/mol (832.0383 without restraints) Performing minimization step: 3441. Total energy = 832.3619 kcal/mol (832.0130 without restraints) Performing minimization step: 3442. Total energy = 832.3365 kcal/mol (831.9877 without restraints) Performing minimization step: 3443. Total energy = 832.3107 kcal/mol (831.9620 without restraints) Performing minimization step: 3444. Total energy = 832.2854 kcal/mol (831.9368 without restraints) Performing minimization step: 3445. Total energy = 832.2600 kcal/mol (831.9115 without restraints) Performing minimization step: 3446. Total energy = 832.2347 kcal/mol (831.8863 without restraints) Performing minimization step: 3447. Total energy = 832.2094 kcal/mol (831.8611 without restraints) Performing minimization step: 3448. Total energy = 832.1841 kcal/mol (831.8358 without restraints) Performing minimization step: 3449. Total energy = 832.1588 kcal/mol (831.8107 without restraints) Performing minimization step: 3450. Total energy = 832.1335 kcal/mol (831.7853 without restraints) Performing minimization step: 3451. Total energy = 832.1081 kcal/mol (831.7601 without restraints) Performing minimization step: 3452. Total energy = 832.0830 kcal/mol (831.7351 without restraints) Performing minimization step: 3453. Total energy = 832.0580 kcal/mol (831.7102 without restraints) Performing minimization step: 3454. Total energy = 832.0327 kcal/mol (831.6850 without restraints) Performing minimization step: 3455. Total energy = 832.0075 kcal/mol (831.6599 without restraints) Performing minimization step: 3456. Total energy = 831.9822 kcal/mol (831.6347 without restraints) Performing minimization step: 3457. Total energy = 831.9570 kcal/mol (831.6096 without restraints) Performing minimization step: 3458. Total energy = 831.9321 kcal/mol (831.5848 without restraints) Performing minimization step: 3459. Total energy = 831.9069 kcal/mol (831.5596 without restraints) Performing minimization step: 3460. Total energy = 831.8817 kcal/mol (831.5345 without restraints) Performing minimization step: 3461. Total energy = 831.8562 kcal/mol (831.5091 without restraints) Performing minimization step: 3462. Total energy = 831.8310 kcal/mol (831.4840 without restraints) Performing minimization step: 3463. Total energy = 831.8057 kcal/mol (831.4589 without restraints) Performing minimization step: 3464. Total energy = 831.7805 kcal/mol (831.4336 without restraints) Performing minimization step: 3465. Total energy = 831.7558 kcal/mol (831.4089 without restraints) Performing minimization step: 3466. Total energy = 831.7301 kcal/mol (831.3834 without restraints) Performing minimization step: 3467. Total energy = 831.7051 kcal/mol (831.3586 without restraints) Performing minimization step: 3468. Total energy = 831.6801 kcal/mol (831.3337 without restraints) Performing minimization step: 3469. Total energy = 831.6550 kcal/mol (831.3086 without restraints) Performing minimization step: 3470. Total energy = 831.6300 kcal/mol (831.2838 without restraints) Performing minimization step: 3471. Total energy = 831.6049 kcal/mol (831.2588 without restraints) Performing minimization step: 3472. Total energy = 831.5798 kcal/mol (831.2337 without restraints) Performing minimization step: 3473. Total energy = 831.5547 kcal/mol (831.2088 without restraints) Performing minimization step: 3474. Total energy = 831.5296 kcal/mol (831.1838 without restraints) Performing minimization step: 3475. Total energy = 831.5045 kcal/mol (831.1587 without restraints) Performing minimization step: 3476. Total energy = 831.4799 kcal/mol (831.1342 without restraints) Performing minimization step: 3477. Total energy = 831.4548 kcal/mol (831.1092 without restraints) Performing minimization step: 3478. Total energy = 831.4298 kcal/mol (831.0843 without restraints) Performing minimization step: 3479. Total energy = 831.4047 kcal/mol (831.0593 without restraints) Performing minimization step: 3480. Total energy = 831.3797 kcal/mol (831.0343 without restraints) Performing minimization step: 3481. Total energy = 831.3547 kcal/mol (831.0096 without restraints) Performing minimization step: 3482. Total energy = 831.3298 kcal/mol (830.9846 without restraints) Performing minimization step: 3483. Total energy = 831.3050 kcal/mol (830.9599 without restraints) Performing minimization step: 3484. Total energy = 831.2800 kcal/mol (830.9351 without restraints) Performing minimization step: 3485. Total energy = 831.2553 kcal/mol (830.9104 without restraints) Performing minimization step: 3486. Total energy = 831.2305 kcal/mol (830.8856 without restraints) Performing minimization step: 3487. Total energy = 831.2055 kcal/mol (830.8607 without restraints) Performing minimization step: 3488. Total energy = 831.1807 kcal/mol (830.8360 without restraints) Performing minimization step: 3489. Total energy = 831.1560 kcal/mol (830.8114 without restraints) Performing minimization step: 3490. Total energy = 831.1310 kcal/mol (830.7865 without restraints) Performing minimization step: 3491. Total energy = 831.1062 kcal/mol (830.7621 without restraints) Performing minimization step: 3492. Total energy = 831.0815 kcal/mol (830.7372 without restraints) Performing minimization step: 3493. Total energy = 831.0565 kcal/mol (830.7123 without restraints) Performing minimization step: 3494. Total energy = 831.0316 kcal/mol (830.6875 without restraints) Performing minimization step: 3495. Total energy = 831.0066 kcal/mol (830.6626 without restraints) Performing minimization step: 3496. Total energy = 830.9821 kcal/mol (830.6383 without restraints) Performing minimization step: 3497. Total energy = 830.9573 kcal/mol (830.6135 without restraints) Performing minimization step: 3498. Total energy = 830.9323 kcal/mol (830.5886 without restraints) Performing minimization step: 3499. Total energy = 830.9074 kcal/mol (830.5638 without restraints) Performing minimization step: 3500. Total energy = 830.8825 kcal/mol (830.5389 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 830.8576 kcal/mol (830.5141 without restraints) Performing minimization step: 3502. Total energy = 830.8327 kcal/mol (830.4894 without restraints) Performing minimization step: 3503. Total energy = 830.8076 kcal/mol (830.4641 without restraints) Performing minimization step: 3504. Total energy = 830.7826 kcal/mol (830.4396 without restraints) Performing minimization step: 3505. Total energy = 830.7581 kcal/mol (830.4149 without restraints) Performing minimization step: 3506. Total energy = 830.7336 kcal/mol (830.3906 without restraints) Performing minimization step: 3507. Total energy = 830.7088 kcal/mol (830.3658 without restraints) Performing minimization step: 3508. Total energy = 830.6839 kcal/mol (830.3411 without restraints) Performing minimization step: 3509. Total energy = 830.6592 kcal/mol (830.3164 without restraints) Performing minimization step: 3510. Total energy = 830.6346 kcal/mol (830.2919 without restraints) Performing minimization step: 3511. Total energy = 830.6098 kcal/mol (830.2672 without restraints) Performing minimization step: 3512. Total energy = 830.5850 kcal/mol (830.2425 without restraints) Performing minimization step: 3513. Total energy = 830.5602 kcal/mol (830.2178 without restraints) Performing minimization step: 3514. Total energy = 830.5354 kcal/mol (830.1931 without restraints) Performing minimization step: 3515. Total energy = 830.5109 kcal/mol (830.1687 without restraints) Performing minimization step: 3516. Total energy = 830.4861 kcal/mol (830.1440 without restraints) Performing minimization step: 3517. Total energy = 830.4614 kcal/mol (830.1193 without restraints) Performing minimization step: 3518. Total energy = 830.4366 kcal/mol (830.0947 without restraints) Performing minimization step: 3519. Total energy = 830.4119 kcal/mol (830.0700 without restraints) Performing minimization step: 3520. Total energy = 830.3873 kcal/mol (830.0456 without restraints) Performing minimization step: 3521. Total energy = 830.3627 kcal/mol (830.0211 without restraints) Performing minimization step: 3522. Total energy = 830.3381 kcal/mol (829.9966 without restraints) Performing minimization step: 3523. Total energy = 830.3133 kcal/mol (829.9717 without restraints) Performing minimization step: 3524. Total energy = 830.2885 kcal/mol (829.9471 without restraints) Performing minimization step: 3525. Total energy = 830.2638 kcal/mol (829.9225 without restraints) Performing minimization step: 3526. Total energy = 830.2391 kcal/mol (829.8979 without restraints) Performing minimization step: 3527. Total energy = 830.2144 kcal/mol (829.8733 without restraints) Performing minimization step: 3528. Total energy = 830.1897 kcal/mol (829.8486 without restraints) Performing minimization step: 3529. Total energy = 830.1650 kcal/mol (829.8241 without restraints) Performing minimization step: 3530. Total energy = 830.1404 kcal/mol (829.7995 without restraints) Performing minimization step: 3531. Total energy = 830.1159 kcal/mol (829.7752 without restraints) Performing minimization step: 3532. Total energy = 830.0910 kcal/mol (829.7503 without restraints) Performing minimization step: 3533. Total energy = 830.0664 kcal/mol (829.7258 without restraints) Performing minimization step: 3534. Total energy = 830.0416 kcal/mol (829.7011 without restraints) Performing minimization step: 3535. Total energy = 830.0169 kcal/mol (829.6765 without restraints) Performing minimization step: 3536. Total energy = 829.9923 kcal/mol (829.6518 without restraints) Performing minimization step: 3537. Total energy = 829.9681 kcal/mol (829.6279 without restraints) Performing minimization step: 3538. Total energy = 829.9435 kcal/mol (829.6034 without restraints) Performing minimization step: 3539. Total energy = 829.9192 kcal/mol (829.5791 without restraints) Performing minimization step: 3540. Total energy = 829.8948 kcal/mol (829.5548 without restraints) Performing minimization step: 3541. Total energy = 829.8702 kcal/mol (829.5303 without restraints) Performing minimization step: 3542. Total energy = 829.8457 kcal/mol (829.5058 without restraints) Performing minimization step: 3543. Total energy = 829.8208 kcal/mol (829.4810 without restraints) Performing minimization step: 3544. Total energy = 829.7966 kcal/mol (829.4570 without restraints) Performing minimization step: 3545. Total energy = 829.7720 kcal/mol (829.4325 without restraints) Performing minimization step: 3546. Total energy = 829.7472 kcal/mol (829.4078 without restraints) Performing minimization step: 3547. Total energy = 829.7227 kcal/mol (829.3833 without restraints) Performing minimization step: 3548. Total energy = 829.6985 kcal/mol (829.3593 without restraints) Performing minimization step: 3549. Total energy = 829.6741 kcal/mol (829.3349 without restraints) Performing minimization step: 3550. Total energy = 829.6496 kcal/mol (829.3105 without restraints) Performing minimization step: 3551. Total energy = 829.6251 kcal/mol (829.2861 without restraints) Performing minimization step: 3552. Total energy = 829.6007 kcal/mol (829.2619 without restraints) Performing minimization step: 3553. Total energy = 829.5763 kcal/mol (829.2375 without restraints) Performing minimization step: 3554. Total energy = 829.5520 kcal/mol (829.2133 without restraints) Performing minimization step: 3555. Total energy = 829.5276 kcal/mol (829.1890 without restraints) Performing minimization step: 3556. Total energy = 829.5033 kcal/mol (829.1647 without restraints) Performing minimization step: 3557. Total energy = 829.4789 kcal/mol (829.1404 without restraints) Performing minimization step: 3558. Total energy = 829.4544 kcal/mol (829.1160 without restraints) Performing minimization step: 3559. Total energy = 829.4300 kcal/mol (829.0916 without restraints) Performing minimization step: 3560. Total energy = 829.4056 kcal/mol (829.0673 without restraints) Performing minimization step: 3561. Total energy = 829.3811 kcal/mol (829.0429 without restraints) Performing minimization step: 3562. Total energy = 829.3565 kcal/mol (829.0184 without restraints) Performing minimization step: 3563. Total energy = 829.3320 kcal/mol (828.9941 without restraints) Performing minimization step: 3564. Total energy = 829.3078 kcal/mol (828.9700 without restraints) Performing minimization step: 3565. Total energy = 829.2835 kcal/mol (828.9459 without restraints) Performing minimization step: 3566. Total energy = 829.2595 kcal/mol (828.9218 without restraints) Performing minimization step: 3567. Total energy = 829.2353 kcal/mol (828.8977 without restraints) Performing minimization step: 3568. Total energy = 829.2109 kcal/mol (828.8734 without restraints) Performing minimization step: 3569. Total energy = 829.1865 kcal/mol (828.8491 without restraints) Performing minimization step: 3570. Total energy = 829.1622 kcal/mol (828.8248 without restraints) Performing minimization step: 3571. Total energy = 829.1378 kcal/mol (828.8006 without restraints) Performing minimization step: 3572. Total energy = 829.1135 kcal/mol (828.7763 without restraints) Performing minimization step: 3573. Total energy = 829.0892 kcal/mol (828.7521 without restraints) Performing minimization step: 3574. Total energy = 829.0649 kcal/mol (828.7279 without restraints) Performing minimization step: 3575. Total energy = 829.0405 kcal/mol (828.7036 without restraints) Performing minimization step: 3576. Total energy = 829.0163 kcal/mol (828.6795 without restraints) Performing minimization step: 3577. Total energy = 828.9921 kcal/mol (828.6553 without restraints) Performing minimization step: 3578. Total energy = 828.9680 kcal/mol (828.6313 without restraints) Performing minimization step: 3579. Total energy = 828.9438 kcal/mol (828.6071 without restraints) Performing minimization step: 3580. Total energy = 828.9193 kcal/mol (828.5828 without restraints) Performing minimization step: 3581. Total energy = 828.8948 kcal/mol (828.5584 without restraints) Performing minimization step: 3582. Total energy = 828.8709 kcal/mol (828.5346 without restraints) Performing minimization step: 3583. Total energy = 828.8466 kcal/mol (828.5104 without restraints) Performing minimization step: 3584. Total energy = 828.8223 kcal/mol (828.4862 without restraints) Performing minimization step: 3585. Total energy = 828.7986 kcal/mol (828.4625 without restraints) Performing minimization step: 3586. Total energy = 828.7743 kcal/mol (828.4383 without restraints) Performing minimization step: 3587. Total energy = 828.7507 kcal/mol (828.4148 without restraints) Performing minimization step: 3588. Total energy = 828.7265 kcal/mol (828.3906 without restraints) Performing minimization step: 3589. Total energy = 828.7022 kcal/mol (828.3665 without restraints) Performing minimization step: 3590. Total energy = 828.6780 kcal/mol (828.3424 without restraints) Performing minimization step: 3591. Total energy = 828.6538 kcal/mol (828.3183 without restraints) Performing minimization step: 3592. Total energy = 828.6296 kcal/mol (828.2941 without restraints) Performing minimization step: 3593. Total energy = 828.6056 kcal/mol (828.2702 without restraints) Performing minimization step: 3594. Total energy = 828.5814 kcal/mol (828.2461 without restraints) Performing minimization step: 3595. Total energy = 828.5572 kcal/mol (828.2220 without restraints) Performing minimization step: 3596. Total energy = 828.5328 kcal/mol (828.1977 without restraints) Performing minimization step: 3597. Total energy = 828.5086 kcal/mol (828.1736 without restraints) Performing minimization step: 3598. Total energy = 828.4844 kcal/mol (828.1495 without restraints) Performing minimization step: 3599. Total energy = 828.4603 kcal/mol (828.1254 without restraints) Performing minimization step: 3600. Total energy = 828.4361 kcal/mol (828.1013 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 828.4120 kcal/mol (828.0773 without restraints) Performing minimization step: 3602. Total energy = 828.3878 kcal/mol (828.0532 without restraints) Performing minimization step: 3603. Total energy = 828.3638 kcal/mol (828.0294 without restraints) Performing minimization step: 3604. Total energy = 828.3398 kcal/mol (828.0053 without restraints) Performing minimization step: 3605. Total energy = 828.3160 kcal/mol (827.9819 without restraints) Performing minimization step: 3606. Total energy = 828.2921 kcal/mol (827.9579 without restraints) Performing minimization step: 3607. Total energy = 828.2680 kcal/mol (827.9338 without restraints) Performing minimization step: 3608. Total energy = 828.2439 kcal/mol (827.9098 without restraints) Performing minimization step: 3609. Total energy = 828.2198 kcal/mol (827.8858 without restraints) Performing minimization step: 3610. Total energy = 828.1959 kcal/mol (827.8620 without restraints) Performing minimization step: 3611. Total energy = 828.1721 kcal/mol (827.8383 without restraints) Performing minimization step: 3612. Total energy = 828.1478 kcal/mol (827.8140 without restraints) Performing minimization step: 3613. Total energy = 828.1236 kcal/mol (827.7900 without restraints) Performing minimization step: 3614. Total energy = 828.0996 kcal/mol (827.7660 without restraints) Performing minimization step: 3615. Total energy = 828.0755 kcal/mol (827.7420 without restraints) Performing minimization step: 3616. Total energy = 828.0515 kcal/mol (827.7181 without restraints) Performing minimization step: 3617. Total energy = 828.0272 kcal/mol (827.6939 without restraints) Performing minimization step: 3618. Total energy = 828.0032 kcal/mol (827.6700 without restraints) Performing minimization step: 3619. Total energy = 827.9794 kcal/mol (827.6462 without restraints) Performing minimization step: 3620. Total energy = 827.9554 kcal/mol (827.6223 without restraints) Performing minimization step: 3621. Total energy = 827.9313 kcal/mol (827.5984 without restraints) Performing minimization step: 3622. Total energy = 827.9077 kcal/mol (827.5748 without restraints) Performing minimization step: 3623. Total energy = 827.8839 kcal/mol (827.5511 without restraints) Performing minimization step: 3624. Total energy = 827.8599 kcal/mol (827.5272 without restraints) Performing minimization step: 3625. Total energy = 827.8359 kcal/mol (827.5033 without restraints) Performing minimization step: 3626. Total energy = 827.8121 kcal/mol (827.4795 without restraints) Performing minimization step: 3627. Total energy = 827.7881 kcal/mol (827.4557 without restraints) Performing minimization step: 3628. Total energy = 827.7637 kcal/mol (827.4313 without restraints) Performing minimization step: 3629. Total energy = 827.7398 kcal/mol (827.4075 without restraints) Performing minimization step: 3630. Total energy = 827.7159 kcal/mol (827.3838 without restraints) Performing minimization step: 3631. Total energy = 827.6921 kcal/mol (827.3600 without restraints) Performing minimization step: 3632. Total energy = 827.6682 kcal/mol (827.3361 without restraints) Performing minimization step: 3633. Total energy = 827.6442 kcal/mol (827.3123 without restraints) Performing minimization step: 3634. Total energy = 827.6203 kcal/mol (827.2884 without restraints) Performing minimization step: 3635. Total energy = 827.5964 kcal/mol (827.2646 without restraints) Performing minimization step: 3636. Total energy = 827.5725 kcal/mol (827.2407 without restraints) Performing minimization step: 3637. Total energy = 827.5485 kcal/mol (827.2168 without restraints) Performing minimization step: 3638. Total energy = 827.5243 kcal/mol (827.1928 without restraints) Performing minimization step: 3639. Total energy = 827.5005 kcal/mol (827.1690 without restraints) Performing minimization step: 3640. Total energy = 827.4766 kcal/mol (827.1452 without restraints) Performing minimization step: 3641. Total energy = 827.4524 kcal/mol (827.1211 without restraints) Performing minimization step: 3642. Total energy = 827.4288 kcal/mol (827.0976 without restraints) Performing minimization step: 3643. Total energy = 827.4050 kcal/mol (827.0738 without restraints) Performing minimization step: 3644. Total energy = 827.3812 kcal/mol (827.0503 without restraints) Performing minimization step: 3645. Total energy = 827.3572 kcal/mol (827.0263 without restraints) Performing minimization step: 3646. Total energy = 827.3337 kcal/mol (827.0029 without restraints) Performing minimization step: 3647. Total energy = 827.3099 kcal/mol (826.9791 without restraints) Performing minimization step: 3648. Total energy = 827.2861 kcal/mol (826.9554 without restraints) Performing minimization step: 3649. Total energy = 827.2622 kcal/mol (826.9316 without restraints) Performing minimization step: 3650. Total energy = 827.2386 kcal/mol (826.9081 without restraints) Performing minimization step: 3651. Total energy = 827.2148 kcal/mol (826.8843 without restraints) Performing minimization step: 3652. Total energy = 827.1910 kcal/mol (826.8606 without restraints) Performing minimization step: 3653. Total energy = 827.1671 kcal/mol (826.8368 without restraints) Performing minimization step: 3654. Total energy = 827.1433 kcal/mol (826.8131 without restraints) Performing minimization step: 3655. Total energy = 827.1197 kcal/mol (826.7896 without restraints) Performing minimization step: 3656. Total energy = 827.0960 kcal/mol (826.7659 without restraints) Performing minimization step: 3657. Total energy = 827.0722 kcal/mol (826.7422 without restraints) Performing minimization step: 3658. Total energy = 827.0486 kcal/mol (826.7188 without restraints) Performing minimization step: 3659. Total energy = 827.0249 kcal/mol (826.6951 without restraints) Performing minimization step: 3660. Total energy = 827.0011 kcal/mol (826.6714 without restraints) Performing minimization step: 3661. Total energy = 826.9774 kcal/mol (826.6477 without restraints) Performing minimization step: 3662. Total energy = 826.9538 kcal/mol (826.6243 without restraints) Performing minimization step: 3663. Total energy = 826.9301 kcal/mol (826.6006 without restraints) Performing minimization step: 3664. Total energy = 826.9063 kcal/mol (826.5770 without restraints) Performing minimization step: 3665. Total energy = 826.8826 kcal/mol (826.5533 without restraints) Performing minimization step: 3666. Total energy = 826.8591 kcal/mol (826.5299 without restraints) Performing minimization step: 3667. Total energy = 826.8354 kcal/mol (826.5063 without restraints) Performing minimization step: 3668. Total energy = 826.8117 kcal/mol (826.4827 without restraints) Performing minimization step: 3669. Total energy = 826.7880 kcal/mol (826.4591 without restraints) Performing minimization step: 3670. Total energy = 826.7646 kcal/mol (826.4357 without restraints) Performing minimization step: 3671. Total energy = 826.7408 kcal/mol (826.4120 without restraints) Performing minimization step: 3672. Total energy = 826.7173 kcal/mol (826.3887 without restraints) Performing minimization step: 3673. Total energy = 826.6937 kcal/mol (826.3651 without restraints) Performing minimization step: 3674. Total energy = 826.6700 kcal/mol (826.3415 without restraints) Performing minimization step: 3675. Total energy = 826.6464 kcal/mol (826.3179 without restraints) Performing minimization step: 3676. Total energy = 826.6228 kcal/mol (826.2946 without restraints) Performing minimization step: 3677. Total energy = 826.5993 kcal/mol (826.2710 without restraints) Performing minimization step: 3678. Total energy = 826.5755 kcal/mol (826.2473 without restraints) Performing minimization step: 3679. Total energy = 826.5519 kcal/mol (826.2238 without restraints) Performing minimization step: 3680. Total energy = 826.5285 kcal/mol (826.2004 without restraints) Performing minimization step: 3681. Total energy = 826.5049 kcal/mol (826.1769 without restraints) Performing minimization step: 3682. Total energy = 826.4813 kcal/mol (826.1534 without restraints) Performing minimization step: 3683. Total energy = 826.4577 kcal/mol (826.1298 without restraints) Performing minimization step: 3684. Total energy = 826.4341 kcal/mol (826.1063 without restraints) Performing minimization step: 3685. Total energy = 826.4105 kcal/mol (826.0828 without restraints) Performing minimization step: 3686. Total energy = 826.3871 kcal/mol (826.0595 without restraints) Performing minimization step: 3687. Total energy = 826.3636 kcal/mol (826.0361 without restraints) Performing minimization step: 3688. Total energy = 826.3400 kcal/mol (826.0126 without restraints) Performing minimization step: 3689. Total energy = 826.3162 kcal/mol (825.9889 without restraints) Performing minimization step: 3690. Total energy = 826.2926 kcal/mol (825.9654 without restraints) Performing minimization step: 3691. Total energy = 826.2691 kcal/mol (825.9420 without restraints) Performing minimization step: 3692. Total energy = 826.2456 kcal/mol (825.9185 without restraints) Performing minimization step: 3693. Total energy = 826.2222 kcal/mol (825.8954 without restraints) Performing minimization step: 3694. Total energy = 826.1989 kcal/mol (825.8719 without restraints) Performing minimization step: 3695. Total energy = 826.1753 kcal/mol (825.8485 without restraints) Performing minimization step: 3696. Total energy = 826.1519 kcal/mol (825.8253 without restraints) Performing minimization step: 3697. Total energy = 826.1289 kcal/mol (825.8022 without restraints) Performing minimization step: 3698. Total energy = 826.1054 kcal/mol (825.7788 without restraints) Performing minimization step: 3699. Total energy = 826.0818 kcal/mol (825.7553 without restraints) Performing minimization step: 3700. Total energy = 826.0583 kcal/mol (825.7319 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 826.0348 kcal/mol (825.7085 without restraints) Performing minimization step: 3702. Total energy = 826.0114 kcal/mol (825.6851 without restraints) Performing minimization step: 3703. Total energy = 825.9879 kcal/mol (825.6617 without restraints) Performing minimization step: 3704. Total energy = 825.9644 kcal/mol (825.6383 without restraints) Performing minimization step: 3705. Total energy = 825.9409 kcal/mol (825.6149 without restraints) Performing minimization step: 3706. Total energy = 825.9173 kcal/mol (825.5914 without restraints) Performing minimization step: 3707. Total energy = 825.8939 kcal/mol (825.5680 without restraints) Performing minimization step: 3708. Total energy = 825.8704 kcal/mol (825.5446 without restraints) Performing minimization step: 3709. Total energy = 825.8470 kcal/mol (825.5213 without restraints) Performing minimization step: 3710. Total energy = 825.8236 kcal/mol (825.4979 without restraints) Performing minimization step: 3711. Total energy = 825.8001 kcal/mol (825.4746 without restraints) Performing minimization step: 3712. Total energy = 825.7768 kcal/mol (825.4514 without restraints) Performing minimization step: 3713. Total energy = 825.7534 kcal/mol (825.4281 without restraints) Performing minimization step: 3714. Total energy = 825.7300 kcal/mol (825.4047 without restraints) Performing minimization step: 3715. Total energy = 825.7066 kcal/mol (825.3814 without restraints) Performing minimization step: 3716. Total energy = 825.6832 kcal/mol (825.3581 without restraints) Performing minimization step: 3717. Total energy = 825.6602 kcal/mol (825.3352 without restraints) Performing minimization step: 3718. Total energy = 825.6366 kcal/mol (825.3116 without restraints) Performing minimization step: 3719. Total energy = 825.6132 kcal/mol (825.2884 without restraints) Performing minimization step: 3720. Total energy = 825.5899 kcal/mol (825.2651 without restraints) Performing minimization step: 3721. Total energy = 825.5665 kcal/mol (825.2418 without restraints) Performing minimization step: 3722. Total energy = 825.5432 kcal/mol (825.2187 without restraints) Performing minimization step: 3723. Total energy = 825.5200 kcal/mol (825.1954 without restraints) Performing minimization step: 3724. Total energy = 825.4967 kcal/mol (825.1722 without restraints) Performing minimization step: 3725. Total energy = 825.4734 kcal/mol (825.1489 without restraints) Performing minimization step: 3726. Total energy = 825.4502 kcal/mol (825.1258 without restraints) Performing minimization step: 3727. Total energy = 825.4269 kcal/mol (825.1026 without restraints) Performing minimization step: 3728. Total energy = 825.4035 kcal/mol (825.0793 without restraints) Performing minimization step: 3729. Total energy = 825.3805 kcal/mol (825.0564 without restraints) Performing minimization step: 3730. Total energy = 825.3572 kcal/mol (825.0332 without restraints) Performing minimization step: 3731. Total energy = 825.3339 kcal/mol (825.0100 without restraints) Performing minimization step: 3732. Total energy = 825.3106 kcal/mol (824.9867 without restraints) Performing minimization step: 3733. Total energy = 825.2871 kcal/mol (824.9633 without restraints) Performing minimization step: 3734. Total energy = 825.2638 kcal/mol (824.9401 without restraints) Performing minimization step: 3735. Total energy = 825.2406 kcal/mol (824.9170 without restraints) Performing minimization step: 3736. Total energy = 825.2172 kcal/mol (824.8936 without restraints) Performing minimization step: 3737. Total energy = 825.1939 kcal/mol (824.8705 without restraints) Performing minimization step: 3738. Total energy = 825.1708 kcal/mol (824.8475 without restraints) Performing minimization step: 3739. Total energy = 825.1476 kcal/mol (824.8243 without restraints) Performing minimization step: 3740. Total energy = 825.1242 kcal/mol (824.8010 without restraints) Performing minimization step: 3741. Total energy = 825.1011 kcal/mol (824.7780 without restraints) Performing minimization step: 3742. Total energy = 825.0779 kcal/mol (824.7549 without restraints) Performing minimization step: 3743. Total energy = 825.0547 kcal/mol (824.7318 without restraints) Performing minimization step: 3744. Total energy = 825.0315 kcal/mol (824.7086 without restraints) Performing minimization step: 3745. Total energy = 825.0081 kcal/mol (824.6853 without restraints) Performing minimization step: 3746. Total energy = 824.9849 kcal/mol (824.6622 without restraints) Performing minimization step: 3747. Total energy = 824.9617 kcal/mol (824.6390 without restraints) Performing minimization step: 3748. Total energy = 824.9385 kcal/mol (824.6159 without restraints) Performing minimization step: 3749. Total energy = 824.9153 kcal/mol (824.5928 without restraints) Performing minimization step: 3750. Total energy = 824.8922 kcal/mol (824.5698 without restraints) Performing minimization step: 3751. Total energy = 824.8690 kcal/mol (824.5467 without restraints) Performing minimization step: 3752. Total energy = 824.8460 kcal/mol (824.5238 without restraints) Performing minimization step: 3753. Total energy = 824.8229 kcal/mol (824.5007 without restraints) Performing minimization step: 3754. Total energy = 824.7994 kcal/mol (824.4773 without restraints) Performing minimization step: 3755. Total energy = 824.7762 kcal/mol (824.4542 without restraints) Performing minimization step: 3756. Total energy = 824.7531 kcal/mol (824.4311 without restraints) Performing minimization step: 3757. Total energy = 824.7300 kcal/mol (824.4082 without restraints) Performing minimization step: 3758. Total energy = 824.7071 kcal/mol (824.3853 without restraints) Performing minimization step: 3759. Total energy = 824.6842 kcal/mol (824.3625 without restraints) Performing minimization step: 3760. Total energy = 824.6611 kcal/mol (824.3394 without restraints) Performing minimization step: 3761. Total energy = 824.6378 kcal/mol (824.3162 without restraints) Performing minimization step: 3762. Total energy = 824.6147 kcal/mol (824.2932 without restraints) Performing minimization step: 3763. Total energy = 824.5916 kcal/mol (824.2702 without restraints) Performing minimization step: 3764. Total energy = 824.5685 kcal/mol (824.2472 without restraints) Performing minimization step: 3765. Total energy = 824.5454 kcal/mol (824.2242 without restraints) Performing minimization step: 3766. Total energy = 824.5221 kcal/mol (824.2009 without restraints) Performing minimization step: 3767. Total energy = 824.4990 kcal/mol (824.1780 without restraints) Performing minimization step: 3768. Total energy = 824.4761 kcal/mol (824.1551 without restraints) Performing minimization step: 3769. Total energy = 824.4531 kcal/mol (824.1322 without restraints) Performing minimization step: 3770. Total energy = 824.4300 kcal/mol (824.1092 without restraints) Performing minimization step: 3771. Total energy = 824.4072 kcal/mol (824.0865 without restraints) Performing minimization step: 3772. Total energy = 824.3842 kcal/mol (824.0635 without restraints) Performing minimization step: 3773. Total energy = 824.3611 kcal/mol (824.0405 without restraints) Performing minimization step: 3774. Total energy = 824.3381 kcal/mol (824.0176 without restraints) Performing minimization step: 3775. Total energy = 824.3151 kcal/mol (823.9946 without restraints) Performing minimization step: 3776. Total energy = 824.2921 kcal/mol (823.9717 without restraints) Performing minimization step: 3777. Total energy = 824.2690 kcal/mol (823.9486 without restraints) Performing minimization step: 3778. Total energy = 824.2459 kcal/mol (823.9256 without restraints) Performing minimization step: 3779. Total energy = 824.2229 kcal/mol (823.9027 without restraints) Performing minimization step: 3780. Total energy = 824.2001 kcal/mol (823.8800 without restraints) Performing minimization step: 3781. Total energy = 824.1772 kcal/mol (823.8572 without restraints) Performing minimization step: 3782. Total energy = 824.1542 kcal/mol (823.8343 without restraints) Performing minimization step: 3783. Total energy = 824.1313 kcal/mol (823.8114 without restraints) Performing minimization step: 3784. Total energy = 824.1081 kcal/mol (823.7883 without restraints) Performing minimization step: 3785. Total energy = 824.0851 kcal/mol (823.7654 without restraints) Performing minimization step: 3786. Total energy = 824.0621 kcal/mol (823.7425 without restraints) Performing minimization step: 3787. Total energy = 824.0390 kcal/mol (823.7195 without restraints) Performing minimization step: 3788. Total energy = 824.0161 kcal/mol (823.6966 without restraints) Performing minimization step: 3789. Total energy = 823.9932 kcal/mol (823.6738 without restraints) Performing minimization step: 3790. Total energy = 823.9700 kcal/mol (823.6507 without restraints) Performing minimization step: 3791. Total energy = 823.9471 kcal/mol (823.6279 without restraints) Performing minimization step: 3792. Total energy = 823.9246 kcal/mol (823.6054 without restraints) Performing minimization step: 3793. Total energy = 823.9019 kcal/mol (823.5828 without restraints) Performing minimization step: 3794. Total energy = 823.8790 kcal/mol (823.5600 without restraints) Performing minimization step: 3795. Total energy = 823.8564 kcal/mol (823.5375 without restraints) Performing minimization step: 3796. Total energy = 823.8336 kcal/mol (823.5149 without restraints) Performing minimization step: 3797. Total energy = 823.8112 kcal/mol (823.4924 without restraints) Performing minimization step: 3798. Total energy = 823.7884 kcal/mol (823.4698 without restraints) Performing minimization step: 3799. Total energy = 823.7658 kcal/mol (823.4473 without restraints) Performing minimization step: 3800. Total energy = 823.7431 kcal/mol (823.4246 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/845cdc5c/tmp/ClusterCentersModel-140_refx/ClusterCentersModel-140_refx.pdb ...Killed /home/ubuntu/rna-tools//opt/qrnas/ Save to ClusterCentersModel-140_refx.pdb DONE!