============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um.pdb ============================================================================= Atom's 1 C5' residue renamed to RC5 Atom's 2 O5' residue renamed to RC5 Atom's 3 C4' residue renamed to RC5 Atom's 4 O4' residue renamed to RC5 Atom's 5 C3' residue renamed to RC5 Atom's 6 O3' residue renamed to RC5 Atom's 7 C2' residue renamed to RC5 Atom's 8 O2' residue renamed to RC5 Atom's 9 C1' residue renamed to RC5 Atom's 10 N1 residue renamed to RC5 Atom's 11 C2 residue renamed to RC5 Atom's 12 O2 residue renamed to RC5 Atom's 13 N3 residue renamed to RC5 Atom's 14 C4 residue renamed to RC5 Atom's 15 N4 residue renamed to RC5 Atom's 16 C5 residue renamed to RC5 Atom's 17 C6 residue renamed to RC5 Atom's 781 OP2 residue renamed to RA3 Atom's 780 OP1 residue renamed to RA3 Atom's 779 N9 residue renamed to RA3 Atom's 778 C8 residue renamed to RA3 Atom's 777 N7 residue renamed to RA3 Atom's 776 N6 residue renamed to RA3 Atom's 775 C6 residue renamed to RA3 Atom's 774 C5 residue renamed to RA3 Atom's 773 C4 residue renamed to RA3 Atom's 772 N3 residue renamed to RA3 Atom's 771 C2 residue renamed to RA3 Atom's 770 N1 residue renamed to RA3 Atom's 769 C1' residue renamed to RA3 Atom's 768 O2' residue renamed to RA3 Atom's 767 C2' residue renamed to RA3 Atom's 766 O3' residue renamed to RA3 Atom's 765 C3' residue renamed to RA3 Atom's 764 O4' residue renamed to RA3 Atom's 763 C4' residue renamed to RA3 Atom's 762 O5' residue renamed to RA3 Atom's 761 C5' residue renamed to RA3 Atom's 760 P residue renamed to RA3 Error: recognition of atom ATOM 776 C01 U A 9 ... failed. Atom erased. Error: recognition of atom ATOM 777 H02 U A 9 ... failed. Atom erased. Error: recognition of atom ATOM 779 H04 U A 9 ... failed. Atom erased. Error: recognition of atom ATOM 780 N U A 9 ... failed. Atom erased. Error: recognition of atom ATOM 781 H1 U A 9 ... failed. Atom erased. Error: recognition of atom ATOM 782 H2 U A 9 ... failed. Atom erased. Missing atom added: ATOM 1 H5T RC5 A 1 0.641 -0.045 -2.360 1.00 0.00 H Missing atom added: ATOM 19 H5'1 RC5 A 1 2.814 0.730 -0.715 1.00 0.00 H Missing atom added: ATOM 20 H5'2 RC5 A 1 2.816 -1.124 -0.707 1.00 0.00 H Missing atom added: ATOM 21 H4' RC5 A 1 3.519 -0.241 1.307 1.00 0.00 H Missing atom added: ATOM 22 H3' RC5 A 1 2.050 1.970 1.295 1.00 0.00 H Missing atom added: ATOM 25 H1' RC5 A 1 4.586 0.786 3.190 1.00 0.00 H Missing atom added: ATOM 23 H2' RC5 A 1 2.799 2.973 2.178 1.00 0.00 H Missing atom added: ATOM 24 HO'2 RC5 A 1 2.089 2.720 3.431 1.00 0.00 H Missing atom added: ATOM 28 H6 RC5 A 1 4.921 3.348 1.465 1.00 0.00 H Missing atom added: ATOM 26 H41 RC5 A 1 9.518 3.387 0.370 1.00 0.00 H Missing atom added: ATOM 27 H42 RC5 A 1 9.972 1.762 0.659 1.00 0.00 H Missing atom added: ATOM 29 H5 RC5 A 1 7.199 4.555 0.638 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 2 -0.606 -0.510 1.757 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 2 -1.195 -1.795 2.955 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 2 -2.236 -2.574 1.895 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 2 -0.886 -3.117 4.389 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 2 -0.767 -5.891 2.010 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 2 -1.693 -5.324 4.401 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 2 -3.392 -4.465 2.639 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 2 1.813 -3.337 2.739 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 2 4.744 -5.785 5.817 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 2 4.604 -7.314 6.564 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 2 0.496 -9.423 5.446 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 3 -4.392 -5.035 4.750 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 3 -5.190 -4.643 6.375 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 3 -5.207 -6.740 6.396 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 3 -3.391 -5.218 8.428 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 3 -2.665 -8.756 7.401 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 3 -3.140 -7.270 9.633 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 3 -5.425 -7.874 8.587 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 3 -1.233 -5.526 6.340 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 3 2.959 -9.098 10.436 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 3 -0.281 -10.714 10.770 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 3 1.200 -10.316 11.439 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 4 -5.149 -7.551 10.881 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 4 -5.631 -6.684 12.447 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 4 -4.369 -8.455 12.977 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 4 -3.097 -5.710 13.480 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 4 -0.969 -8.752 12.690 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 4 -1.332 -6.857 14.666 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 4 -3.122 -8.695 15.007 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 4 -2.128 -5.952 10.957 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 4 1.751 -3.500 9.798 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 4 2.962 -4.295 10.710 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 4 -0.813 -3.988 9.626 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 5 -2.456 -7.602 16.721 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 5 -2.877 -6.660 18.261 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 5 -0.775 -7.573 18.382 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 5 -0.806 -4.529 18.118 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 5 2.063 -6.743 16.739 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 5 1.588 -4.599 18.573 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 5 1.017 -6.768 19.805 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 5 -0.388 -4.877 14.895 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 5 2.724 -1.686 12.807 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 5 4.385 -1.379 13.062 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 5 6.151 -4.093 16.529 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 6 1.628 -5.074 20.879 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 6 1.320 -4.100 22.424 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 6 3.450 -3.855 21.961 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 6 1.672 -1.340 21.279 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 6 5.195 -2.261 19.787 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 6 3.740 -0.078 21.150 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 6 4.527 -1.623 22.956 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 6 1.900 -1.937 18.334 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 6 7.072 1.456 15.351 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 6 8.381 0.388 18.572 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 6 8.392 1.488 17.312 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 7 1.334 1.067 25.771 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 7 2.875 0.038 25.792 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 7 3.425 0.387 27.223 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 7 3.987 -1.263 24.960 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 7 3.873 -3.074 28.206 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 7 5.565 -2.507 26.141 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 7 5.612 -0.555 27.762 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 7 2.767 -2.834 24.545 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 7 1.626 -7.578 23.976 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 7 1.586 -8.886 25.073 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 7 2.979 -7.562 29.415 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 8 7.271 0.048 24.311 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 8 7.630 1.347 25.584 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 8 9.455 1.091 24.327 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 8 7.693 3.586 23.397 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 8 10.042 1.938 21.129 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 8 9.450 4.340 22.060 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 8 10.978 3.155 23.766 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 8 6.749 1.121 21.858 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 8 3.997 2.683 18.345 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 8 5.066 3.697 17.473 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 8 4.409 1.266 20.500 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 9 10.925 5.607 23.944 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 9 10.781 7.048 25.101 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 9 11.843 7.766 23.296 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 9 8.778 8.585 23.364 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 9 10.589 8.375 20.201 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 9 9.111 10.059 21.590 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 9 11.540 10.207 22.433 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 9 8.627 6.312 22.410 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 9 6.306 7.643 17.947 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 9 6.453 5.269 21.871 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 10 8.486 13.708 23.472 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 10 8.166 12.547 22.065 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 10 8.421 13.939 20.874 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 10 7.230 14.173 20.706 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 10 9.071 11.790 18.462 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 10 7.677 14.124 18.357 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 10 10.102 14.680 19.074 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 10 7.212 10.293 20.908 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 10 3.007 11.715 15.670 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 10 5.842 13.934 15.208 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 10 4.208 13.629 15.011 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 11 7.038 18.768 19.887 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 11 5.836 18.725 21.298 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 11 5.755 19.554 18.824 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 11 3.907 18.116 18.820 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 11 6.014 16.926 16.215 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 11 3.790 18.052 16.493 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 11 5.668 19.876 16.586 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 11 6.143 15.056 19.236 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 11 2.050 12.358 19.346 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 11 0.624 12.395 18.406 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 11 0.767 15.876 15.174 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 12 1.610 18.184 18.014 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 12 2.546 18.943 16.607 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 12 0.391 17.634 16.452 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 12 0.201 19.434 15.001 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 12 -2.709 19.218 17.545 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 12 -2.138 18.946 14.736 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 12 -1.574 16.741 15.820 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 12 -4.162 20.629 17.332 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 12 -0.580 23.987 15.604 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 12 -4.836 22.977 16.986 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 13 -1.299 17.772 11.231 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 13 0.052 18.947 10.755 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 13 -2.440 18.232 10.292 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 13 -2.684 19.169 9.440 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 13 -5.102 18.925 12.093 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 13 -4.924 18.753 9.497 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 13 -4.319 16.500 10.527 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 13 -5.974 21.052 10.310 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 13 -0.547 24.603 12.574 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 13 0.018 21.205 13.722 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 13 0.237 22.849 13.938 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 14 -3.578 18.400 6.658 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 14 -2.242 18.107 5.406 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 14 -3.919 20.021 5.508 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 14 -1.524 21.136 5.675 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 14 -3.857 22.345 8.333 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 14 -2.547 23.246 6.150 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 14 -4.722 22.080 5.351 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 14 -0.988 20.106 8.693 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 14 2.298 23.213 10.600 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 14 2.281 24.906 10.827 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 14 -1.715 26.844 9.144 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 15 -3.772 23.854 4.261 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 15 -3.095 24.601 2.707 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 15 -3.358 26.311 3.627 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 15 -0.381 25.212 3.192 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 15 -1.298 27.991 5.528 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 15 0.389 27.459 3.476 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 15 -1.915 28.105 2.473 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 15 -0.811 24.374 6.059 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 15 4.423 28.125 8.443 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 15 2.542 30.388 6.302 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 15 4.007 29.929 6.968 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 16 -0.325 28.658 0.789 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 16 0.814 28.354 -0.641 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 16 1.322 30.313 0.455 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 16 3.423 28.267 0.404 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 16 3.109 30.348 3.524 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 16 4.886 29.795 1.522 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 16 3.257 31.601 0.654 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 16 2.179 26.865 2.783 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 16 7.735 27.354 6.788 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 16 7.269 30.690 5.432 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 16 8.300 29.509 6.019 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 17 5.512 31.496 -0.669 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 17 6.481 31.149 -2.210 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 17 7.792 31.988 -0.487 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 17 8.336 29.084 -1.155 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 17 8.709 30.302 2.409 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 17 10.174 29.129 0.379 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 17 10.144 31.665 -0.045 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 17 6.272 28.547 0.648 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 17 6.123 24.250 2.620 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 17 7.514 24.265 3.618 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 17 5.171 26.102 1.039 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 18 11.971 30.768 -0.953 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 18 13.043 30.244 -2.372 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 18 14.224 29.914 -0.551 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 18 13.140 27.325 -1.943 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 18 13.990 27.417 1.718 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 18 14.622 26.051 -0.558 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 18 16.034 28.220 -0.518 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 18 11.208 27.593 -0.486 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 18 8.407 23.981 0.724 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 18 9.379 23.134 1.850 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 18 8.909 26.165 -0.617 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 19 16.751 26.245 -1.679 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 19 17.398 25.482 -3.238 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 19 17.768 24.055 -1.563 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 19 15.429 23.238 -3.478 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 19 15.517 22.066 0.049 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 19 15.412 21.090 -2.439 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 19 17.898 21.629 -1.894 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 19 13.792 24.737 -1.964 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 19 9.501 19.896 0.338 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 19 12.825 18.572 0.969 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 19 11.209 18.296 0.634 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 20 15.478 20.909 -7.308 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 20 14.209 21.637 -6.169 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 20 13.835 19.441 -7.157 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 20 14.652 19.142 -4.248 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 20 15.927 16.628 -6.571 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 20 14.490 16.830 -4.356 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 20 12.953 17.228 -6.370 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 20 17.568 19.735 -5.409 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 20 20.608 17.973 -1.987 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 20 20.793 16.417 -1.308 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 20 17.616 13.361 -3.073 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 21 11.947 16.475 -4.055 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 21 10.680 16.805 -2.742 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 21 11.823 14.696 -2.673 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 21 12.644 16.494 -0.429 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 21 15.311 14.450 -1.887 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 21 14.094 14.917 0.442 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 21 12.726 13.206 -0.866 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 21 14.267 17.999 -2.453 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 21 17.954 20.332 -0.220 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 21 19.275 19.774 0.706 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 21 19.149 15.053 1.235 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 22 12.833 13.063 1.305 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 22 11.989 13.054 2.955 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 22 13.997 12.449 3.406 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 22 13.008 15.205 4.437 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 22 16.573 14.786 3.852 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 22 14.883 15.483 5.752 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 22 15.063 12.932 5.712 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 22 13.315 16.273 2.446 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 22 14.834 20.882 1.763 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 22 16.336 21.649 2.029 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 22 19.511 18.645 3.892 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 23 10.802 16.262 7.781 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 23 12.478 16.645 7.090 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 23 12.849 17.900 7.762 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 23 12.193 18.856 7.856 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 23 14.864 18.329 5.479 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 23 14.053 20.077 7.225 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 23 15.413 18.260 8.445 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 23 11.404 17.205 5.035 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 23 12.085 23.554 2.515 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 23 15.043 23.041 4.565 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 23 13.910 24.088 3.917 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 24 15.203 20.435 9.399 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 24 14.947 21.350 10.990 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 24 16.072 22.694 9.640 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 24 13.028 23.423 9.977 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 24 14.958 24.451 6.967 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 24 13.466 25.514 8.933 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 24 15.871 25.183 9.839 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 24 12.716 21.578 7.618 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 24 9.696 26.425 3.805 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 24 12.663 28.021 5.166 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 24 11.092 28.151 4.607 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 25 14.428 26.912 11.111 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 25 13.642 27.497 12.684 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 25 13.576 29.069 10.956 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 25 10.870 27.910 11.651 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 25 11.612 28.862 8.079 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 25 9.860 29.437 10.122 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 25 11.984 30.838 10.485 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 25 11.636 25.856 9.819 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 25 8.126 23.263 7.998 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 25 7.284 24.413 7.049 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 25 10.261 23.548 9.477 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 26 10.500 32.253 11.819 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 26 9.354 32.634 13.225 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 26 8.734 33.733 11.302 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 26 6.793 31.780 12.380 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 26 6.986 32.014 8.697 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 26 5.247 32.353 10.693 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 26 6.650 34.513 10.475 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 26 8.235 29.986 11.348 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 26 6.271 25.715 10.848 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 26 5.128 25.987 9.603 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 26 7.961 27.363 11.965 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 27 4.192 35.090 13.629 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 27 4.259 34.951 15.475 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 27 2.299 35.121 13.788 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 27 2.115 32.565 14.681 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 27 2.089 32.847 10.946 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 27 0.495 32.073 13.024 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 27 0.296 34.620 12.783 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 27 4.893 31.707 12.877 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 27 1.172 26.421 10.556 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 27 -1.020 29.316 10.280 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 27 -0.845 27.667 10.504 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 28 1.271 31.121 15.265 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 28 -0.304 30.519 16.035 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 28 -0.259 29.214 15.907 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 28 0.404 28.874 17.838 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 28 -1.949 27.581 15.223 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 28 -1.335 27.291 17.892 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 28 -2.898 29.288 17.643 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 28 -0.987 25.576 14.177 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 28 3.657 24.051 14.663 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 28 4.970 24.650 15.576 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 28 3.792 28.594 17.940 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 29 -3.452 30.227 19.647 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 29 -3.146 30.697 21.414 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 29 -5.358 29.950 20.542 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 29 -4.201 27.749 22.141 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 29 -5.896 26.768 19.004 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 29 -6.078 26.392 21.635 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 29 -7.246 28.631 21.051 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 29 -2.308 27.181 19.856 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 29 -0.940 22.488 20.219 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 29 -1.821 21.026 20.168 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 29 -6.481 21.826 19.703 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 30 -8.088 27.630 22.908 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 30 -8.447 27.526 24.723 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 30 -9.573 25.893 23.722 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 30 -7.308 25.074 25.601 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 30 -8.281 22.890 22.648 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 30 -8.082 22.802 25.414 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 30 -10.343 23.889 24.833 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 30 -5.406 25.055 22.908 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 30 -1.905 21.661 23.425 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 30 -1.969 19.974 23.681 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 30 -6.453 18.448 24.067 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 31 -10.189 22.791 26.689 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 31 -10.408 22.704 28.528 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 31 -10.291 20.630 27.846 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 31 -7.789 21.714 29.388 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 31 -7.533 18.859 26.976 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 31 -6.999 19.473 29.574 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 31 -9.494 18.839 29.410 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 31 -7.006 22.363 27.068 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 31 -2.396 22.989 26.211 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 31 -1.801 21.385 26.261 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 31 -4.829 23.888 26.541 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 32 -8.825 20.057 33.302 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 32 -9.020 21.613 34.291 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 32 -8.299 19.093 34.301 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 32 -6.160 19.609 34.308 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 32 -6.623 17.774 31.286 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 32 -5.442 17.579 33.553 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 32 -7.877 16.816 33.808 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 32 -6.511 21.432 31.336 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 32 -1.738 22.438 30.827 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 32 -0.347 21.447 30.848 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 32 -1.462 16.906 31.678 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 33 -6.071 16.199 35.543 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 33 -6.011 15.889 37.370 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 33 -4.432 14.651 36.233 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 33 -3.176 17.222 37.553 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 33 -1.664 15.758 34.553 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 33 -1.027 16.449 37.023 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 33 -2.091 14.096 37.085 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 33 -4.168 18.174 35.178 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 33 -2.347 22.422 34.178 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 33 -0.690 22.057 33.948 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 33 -4.346 20.845 34.770 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 34 -0.864 13.986 39.349 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 34 -0.532 14.468 41.108 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 34 1.390 13.803 40.051 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 34 1.299 16.639 40.954 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 34 3.120 15.928 37.788 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 34 3.539 16.943 40.255 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 34 3.692 14.374 40.409 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 34 -0.231 17.372 38.580 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 34 0.566 22.007 37.181 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 34 1.971 22.819 36.649 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 34 5.757 19.953 36.688 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 35 4.893 15.521 41.913 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 35 5.340 15.903 43.671 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 35 6.943 16.724 42.346 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 35 5.093 18.847 43.659 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 35 6.759 19.568 40.417 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 35 6.574 20.546 42.909 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 35 8.350 18.658 42.909 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 35 3.639 18.385 41.646 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 35 0.415 21.626 40.446 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 35 1.389 22.899 39.845 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 35 1.101 19.294 41.401 1.00 0.00 H Missing atom added: ATOM 23 H5'1 RA3 A 36 8.765 20.170 44.630 1.00 0.00 H Missing atom added: ATOM 24 H5'2 RA3 A 36 8.846 20.713 46.401 1.00 0.00 H Missing atom added: ATOM 25 H4' RA3 A 36 9.676 22.352 45.127 1.00 0.00 H Missing atom added: ATOM 26 H3' RA3 A 36 6.905 22.920 46.398 1.00 0.00 H Missing atom added: ATOM 29 H1' RA3 A 36 7.947 24.561 43.171 1.00 0.00 H Missing atom added: ATOM 27 H2' RA3 A 36 7.113 25.198 45.712 1.00 0.00 H Missing atom added: ATOM 28 HO'2 RA3 A 36 9.644 24.745 45.808 1.00 0.00 H Missing atom added: ATOM 30 H8 RA3 A 36 5.626 21.800 44.146 1.00 0.00 H Missing atom added: ATOM 31 H61 RA3 A 36 1.445 23.865 42.616 1.00 0.00 H Missing atom added: ATOM 32 H62 RA3 A 36 1.096 25.409 41.975 1.00 0.00 H Missing atom added: ATOM 33 H2 RA3 A 36 4.976 28.140 41.807 1.00 0.00 H Missing atom added: ATOM 34 H3T RA3 A 36 9.485 23.815 46.996 1.00 0.00 H Number of atoms: 1171 Number of residues: 36 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 1266 Number of angles built: 2256 Number of dihedrals built: 3430 Number of impropers built: 250 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 681513 Number of van der Waals pairs: 109595 Number of H-bonds built: 17 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 5 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 10550.0176 kcal/mol (10542.4153 without restraints) Performing minimization step: 2. Total energy = 10503.2179 kcal/mol (10495.7381 without restraints) Performing minimization step: 3. Total energy = 10457.4300 kcal/mol (10450.0678 without restraints) Performing minimization step: 4. Total energy = 10412.6127 kcal/mol (10405.3634 without restraints) Performing minimization step: 5. Total energy = 10368.7268 kcal/mol (10361.5857 without restraints) Performing minimization step: 6. Total energy = 10325.7352 kcal/mol (10318.6984 without restraints) Performing minimization step: 7. Total energy = 10283.6029 kcal/mol (10276.6661 without restraints) Performing minimization step: 8. Total energy = 10242.2964 kcal/mol (10235.4559 without restraints) Performing minimization step: 9. Total energy = 10201.7835 kcal/mol (10195.0355 without restraints) Performing minimization step: 10. Total energy = 10162.0342 kcal/mol (10155.3753 without restraints) Performing minimization step: 11. Total energy = 10123.0196 kcal/mol (10116.4465 without restraints) Performing minimization step: 12. Total energy = 10084.7123 kcal/mol (10078.2220 without restraints) Performing minimization step: 13. Total energy = 10047.0859 kcal/mol (10040.6752 without restraints) Performing minimization step: 14. Total energy = 10010.1163 kcal/mol (10003.7825 without restraints) Performing minimization step: 15. Total energy = 9973.7794 kcal/mol (9967.5197 without restraints) Performing minimization step: 16. Total energy = 9938.0526 kcal/mol (9931.8644 without restraints) Performing minimization step: 17. Total energy = 9902.9146 kcal/mol (9896.7954 without restraints) Performing minimization step: 18. Total energy = 9868.3442 kcal/mol (9862.2918 without restraints) Performing minimization step: 19. Total energy = 9834.3223 kcal/mol (9828.3343 without restraints) Performing minimization step: 20. Total energy = 9800.8299 kcal/mol (9794.9042 without restraints) Performing minimization step: 21. Total energy = 9767.8489 kcal/mol (9761.9835 without restraints) Performing minimization step: 22. Total energy = 9735.3625 kcal/mol (9729.5553 without restraints) Performing minimization step: 23. Total energy = 9703.3544 kcal/mol (9697.6036 without restraints) Performing minimization step: 24. Total energy = 9671.8088 kcal/mol (9666.1126 without restraints) Performing minimization step: 25. Total energy = 9640.7107 kcal/mol (9635.0674 without restraints) Performing minimization step: 26. Total energy = 9610.0457 kcal/mol (9604.4537 without restraints) Performing minimization step: 27. Total energy = 9579.8002 kcal/mol (9574.2578 without restraints) Performing minimization step: 28. Total energy = 9549.9610 kcal/mol (9544.4668 without restraints) Performing minimization step: 29. Total energy = 9520.5155 kcal/mol (9515.0679 without restraints) Performing minimization step: 30. Total energy = 9491.4515 kcal/mol (9486.0493 without restraints) Performing minimization step: 31. Total energy = 9462.7576 kcal/mol (9457.3994 without restraints) Performing minimization step: 32. Total energy = 9434.4226 kcal/mol (9429.1071 without restraints) Performing minimization step: 33. Total energy = 9406.4358 kcal/mol (9401.1619 without restraints) Performing minimization step: 34. Total energy = 9378.7871 kcal/mol (9373.5535 without restraints) Performing minimization step: 35. Total energy = 9351.4667 kcal/mol (9346.2723 without restraints) Performing minimization step: 36. Total energy = 9324.4652 kcal/mol (9319.3090 without restraints) Performing minimization step: 37. Total energy = 9297.7734 kcal/mol (9292.6542 without restraints) Performing minimization step: 38. Total energy = 9271.3826 kcal/mol (9266.2995 without restraints) Performing minimization step: 39. Total energy = 9245.2845 kcal/mol (9240.2366 without restraints) Performing minimization step: 40. Total energy = 9219.4710 kcal/mol (9214.4574 without restraints) Performing minimization step: 41. Total energy = 9193.9346 kcal/mol (9188.9543 without restraints) Performing minimization step: 42. Total energy = 9168.6673 kcal/mol (9163.7196 without restraints) Performing minimization step: 43. Total energy = 9143.6627 kcal/mol (9138.7466 without restraints) Performing minimization step: 44. Total energy = 9118.9135 kcal/mol (9114.0284 without restraints) Performing minimization step: 45. Total energy = 9094.4132 kcal/mol (9089.5581 without restraints) Performing minimization step: 46. Total energy = 9070.1553 kcal/mol (9065.3296 without restraints) Performing minimization step: 47. Total energy = 9046.1337 kcal/mol (9041.3367 without restraints) Performing minimization step: 48. Total energy = 9022.3424 kcal/mol (9017.5734 without restraints) Performing minimization step: 49. Total energy = 8998.7757 kcal/mol (8994.0342 without restraints) Performing minimization step: 50. Total energy = 8975.4281 kcal/mol (8970.7133 without restraints) Performing minimization step: 51. Total energy = 8952.2942 kcal/mol (8947.6055 without restraints) Performing minimization step: 52. Total energy = 8929.3690 kcal/mol (8924.7059 without restraints) Performing minimization step: 53. Total energy = 8906.6475 kcal/mol (8902.0094 without restraints) Performing minimization step: 54. Total energy = 8884.1249 kcal/mol (8879.5112 without restraints) Performing minimization step: 55. Total energy = 8861.7965 kcal/mol (8857.2067 without restraints) Performing minimization step: 56. Total energy = 8839.6580 kcal/mol (8835.0916 without restraints) Performing minimization step: 57. Total energy = 8817.7049 kcal/mol (8813.1614 without restraints) Performing minimization step: 58. Total energy = 8795.9331 kcal/mol (8791.4121 without restraints) Performing minimization step: 59. Total energy = 8774.3386 kcal/mol (8769.8395 without restraints) Performing minimization step: 60. Total energy = 8752.9175 kcal/mol (8748.4399 without restraints) Performing minimization step: 61. Total energy = 8731.6661 kcal/mol (8727.2096 without restraints) Performing minimization step: 62. Total energy = 8710.5806 kcal/mol (8706.1449 without restraints) Performing minimization step: 63. Total energy = 8689.6574 kcal/mol (8685.2420 without restraints) Performing minimization step: 64. Total energy = 8668.8931 kcal/mol (8664.4975 without restraints) Performing minimization step: 65. Total energy = 8648.2845 kcal/mol (8643.9084 without restraints) Performing minimization step: 66. Total energy = 8627.8283 kcal/mol (8623.4713 without restraints) Performing minimization step: 67. Total energy = 8607.5214 kcal/mol (8603.1832 without restraints) Performing minimization step: 68. Total energy = 8587.3607 kcal/mol (8583.0411 without restraints) Performing minimization step: 69. Total energy = 8567.3437 kcal/mol (8563.0422 without restraints) Performing minimization step: 70. Total energy = 8547.4671 kcal/mol (8543.1834 without restraints) Performing minimization step: 71. Total energy = 8527.7283 kcal/mol (8523.4620 without restraints) Performing minimization step: 72. Total energy = 8508.1244 kcal/mol (8503.8753 without restraints) Performing minimization step: 73. Total energy = 8488.6531 kcal/mol (8484.4209 without restraints) Performing minimization step: 74. Total energy = 8469.3118 kcal/mol (8465.0962 without restraints) Performing minimization step: 75. Total energy = 8450.0981 kcal/mol (8445.8988 without restraints) Performing minimization step: 76. Total energy = 8431.0093 kcal/mol (8426.8261 without restraints) Performing minimization step: 77. Total energy = 8412.0435 kcal/mol (8407.8759 without restraints) Performing minimization step: 78. Total energy = 8393.1983 kcal/mol (8389.0464 without restraints) Performing minimization step: 79. Total energy = 8374.4715 kcal/mol (8370.3349 without restraints) Performing minimization step: 80. Total energy = 8355.8613 kcal/mol (8351.7397 without restraints) Performing minimization step: 81. Total energy = 8337.3651 kcal/mol (8333.2584 without restraints) Performing minimization step: 82. Total energy = 8318.9815 kcal/mol (8314.8894 without restraints) Performing minimization step: 83. Total energy = 8300.7082 kcal/mol (8296.6305 without restraints) Performing minimization step: 84. Total energy = 8282.5432 kcal/mol (8278.4796 without restraints) Performing minimization step: 85. Total energy = 8264.4850 kcal/mol (8260.4354 without restraints) Performing minimization step: 86. Total energy = 8246.5315 kcal/mol (8242.4955 without restraints) Performing minimization step: 87. Total energy = 8228.6811 kcal/mol (8224.6588 without restraints) Performing minimization step: 88. Total energy = 8210.9322 kcal/mol (8206.9233 without restraints) Performing minimization step: 89. Total energy = 8193.2830 kcal/mol (8189.2873 without restraints) Performing minimization step: 90. Total energy = 8175.7320 kcal/mol (8171.7493 without restraints) Performing minimization step: 91. Total energy = 8158.2773 kcal/mol (8154.3074 without restraints) Performing minimization step: 92. Total energy = 8140.9177 kcal/mol (8136.9605 without restraints) Performing minimization step: 93. Total energy = 8123.6519 kcal/mol (8119.7071 without restraints) Performing minimization step: 94. Total energy = 8106.4783 kcal/mol (8102.5458 without restraints) Performing minimization step: 95. Total energy = 8089.3952 kcal/mol (8085.4749 without restraints) Performing minimization step: 96. Total energy = 8072.4014 kcal/mol (8068.4931 without restraints) Performing minimization step: 97. Total energy = 8055.4956 kcal/mol (8051.5991 without restraints) Performing minimization step: 98. Total energy = 8038.6764 kcal/mol (8034.7917 without restraints) Performing minimization step: 99. Total energy = 8021.9426 kcal/mol (8018.0694 without restraints) Performing minimization step: 100. Total energy = 8005.2925 kcal/mol (8001.4308 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 101. Total energy = 7988.7256 kcal/mol (7984.8751 without restraints) Performing minimization step: 102. Total energy = 7972.2405 kcal/mol (7968.4012 without restraints) Performing minimization step: 103. Total energy = 7955.8361 kcal/mol (7952.0079 without restraints) Performing minimization step: 104. Total energy = 7939.5112 kcal/mol (7935.6938 without restraints) Performing minimization step: 105. Total energy = 7923.2644 kcal/mol (7919.4578 without restraints) Performing minimization step: 106. Total energy = 7907.0949 kcal/mol (7903.2989 without restraints) Performing minimization step: 107. Total energy = 7891.0015 kcal/mol (7887.2161 without restraints) Performing minimization step: 108. Total energy = 7874.9836 kcal/mol (7871.2086 without restraints) Performing minimization step: 109. Total energy = 7859.0395 kcal/mol (7855.2748 without restraints) Performing minimization step: 110. Total energy = 7843.1687 kcal/mol (7839.4142 without restraints) Performing minimization step: 111. Total energy = 7827.3700 kcal/mol (7823.6256 without restraints) Performing minimization step: 112. Total energy = 7811.6426 kcal/mol (7807.9082 without restraints) Performing minimization step: 113. Total energy = 7795.9856 kcal/mol (7792.2610 without restraints) Performing minimization step: 114. Total energy = 7780.3984 kcal/mol (7776.6836 without restraints) Performing minimization step: 115. Total energy = 7764.8794 kcal/mol (7761.1743 without restraints) Performing minimization step: 116. Total energy = 7749.4281 kcal/mol (7745.7325 without restraints) Performing minimization step: 117. Total energy = 7734.0436 kcal/mol (7730.3576 without restraints) Performing minimization step: 118. Total energy = 7718.7252 kcal/mol (7715.0486 without restraints) Performing minimization step: 119. Total energy = 7703.4722 kcal/mol (7699.8048 without restraints) Performing minimization step: 120. Total energy = 7688.2836 kcal/mol (7684.6256 without restraints) Performing minimization step: 121. Total energy = 7673.1588 kcal/mol (7669.5098 without restraints) Performing minimization step: 122. Total energy = 7658.0968 kcal/mol (7654.4569 without restraints) Performing minimization step: 123. Total energy = 7643.0970 kcal/mol (7639.4660 without restraints) Performing minimization step: 124. Total energy = 7628.1587 kcal/mol (7624.5366 without restraints) Performing minimization step: 125. Total energy = 7613.2811 kcal/mol (7609.6678 without restraints) Performing minimization step: 126. Total energy = 7598.4634 kcal/mol (7594.8588 without restraints) Performing minimization step: 127. Total energy = 7583.7053 kcal/mol (7580.1095 without restraints) Performing minimization step: 128. Total energy = 7569.0060 kcal/mol (7565.4187 without restraints) Performing minimization step: 129. Total energy = 7554.3648 kcal/mol (7550.7860 without restraints) Performing minimization step: 130. Total energy = 7539.7811 kcal/mol (7536.2107 without restraints) Performing minimization step: 131. Total energy = 7525.2540 kcal/mol (7521.6920 without restraints) Performing minimization step: 132. Total energy = 7510.7833 kcal/mol (7507.2297 without restraints) Performing minimization step: 133. Total energy = 7496.3684 kcal/mol (7492.8229 without restraints) Performing minimization step: 134. Total energy = 7482.0084 kcal/mol (7478.4712 without restraints) Performing minimization step: 135. Total energy = 7467.7031 kcal/mol (7464.1740 without restraints) Performing minimization step: 136. Total energy = 7453.4514 kcal/mol (7449.9303 without restraints) Performing minimization step: 137. Total energy = 7439.2533 kcal/mol (7435.7402 without restraints) Performing minimization step: 138. Total energy = 7425.1077 kcal/mol (7421.6025 without restraints) Performing minimization step: 139. Total energy = 7411.0146 kcal/mol (7407.5173 without restraints) Performing minimization step: 140. Total energy = 7396.9733 kcal/mol (7393.4837 without restraints) Performing minimization step: 141. Total energy = 7382.9834 kcal/mol (7379.5017 without restraints) Performing minimization step: 142. Total energy = 7369.0441 kcal/mol (7365.5700 without restraints) Performing minimization step: 143. Total energy = 7355.1551 kcal/mol (7351.6886 without restraints) Performing minimization step: 144. Total energy = 7341.3160 kcal/mol (7337.8572 without restraints) Performing minimization step: 145. Total energy = 7327.5261 kcal/mol (7324.0747 without restraints) Performing minimization step: 146. Total energy = 7313.7848 kcal/mol (7310.3409 without restraints) Performing minimization step: 147. Total energy = 7300.0920 kcal/mol (7296.6556 without restraints) Performing minimization step: 148. Total energy = 7286.4473 kcal/mol (7283.0182 without restraints) Performing minimization step: 149. Total energy = 7272.8501 kcal/mol (7269.4284 without restraints) Performing minimization step: 150. Total energy = 7259.2999 kcal/mol (7255.8855 without restraints) Performing minimization step: 151. Total energy = 7245.7966 kcal/mol (7242.3893 without restraints) Performing minimization step: 152. Total energy = 7232.3392 kcal/mol (7228.9392 without restraints) Performing minimization step: 153. Total energy = 7218.9278 kcal/mol (7215.5349 without restraints) Performing minimization step: 154. Total energy = 7205.5617 kcal/mol (7202.1759 without restraints) Performing minimization step: 155. Total energy = 7192.2407 kcal/mol (7188.8620 without restraints) Performing minimization step: 156. Total energy = 7178.9644 kcal/mol (7175.5927 without restraints) Performing minimization step: 157. Total energy = 7165.7323 kcal/mol (7162.3676 without restraints) Performing minimization step: 158. Total energy = 7152.5442 kcal/mol (7149.1864 without restraints) Performing minimization step: 159. Total energy = 7139.3996 kcal/mol (7136.0486 without restraints) Performing minimization step: 160. Total energy = 7126.2981 kcal/mol (7122.9541 without restraints) Performing minimization step: 161. Total energy = 7113.2395 kcal/mol (7109.9022 without restraints) Performing minimization step: 162. Total energy = 7100.2231 kcal/mol (7096.8927 without restraints) Performing minimization step: 163. Total energy = 7087.2491 kcal/mol (7083.9254 without restraints) Performing minimization step: 164. Total energy = 7074.3169 kcal/mol (7070.9999 without restraints) Performing minimization step: 165. Total energy = 7061.4262 kcal/mol (7058.1158 without restraints) Performing minimization step: 166. Total energy = 7048.5766 kcal/mol (7045.2728 without restraints) Performing minimization step: 167. Total energy = 7035.7678 kcal/mol (7032.4707 without restraints) Performing minimization step: 168. Total energy = 7022.9996 kcal/mol (7019.7090 without restraints) Performing minimization step: 169. Total energy = 7010.2716 kcal/mol (7006.9875 without restraints) Performing minimization step: 170. Total energy = 6997.5835 kcal/mol (6994.3058 without restraints) Performing minimization step: 171. Total energy = 6984.9349 kcal/mol (6981.6638 without restraints) Performing minimization step: 172. Total energy = 6972.3261 kcal/mol (6969.0614 without restraints) Performing minimization step: 173. Total energy = 6959.7560 kcal/mol (6956.4976 without restraints) Performing minimization step: 174. Total energy = 6947.2246 kcal/mol (6943.9726 without restraints) Performing minimization step: 175. Total energy = 6934.7316 kcal/mol (6931.4859 without restraints) Performing minimization step: 176. Total energy = 6922.2768 kcal/mol (6919.0374 without restraints) Performing minimization step: 177. Total energy = 6909.8600 kcal/mol (6906.6268 without restraints) Performing minimization step: 178. Total energy = 6897.4808 kcal/mol (6894.2539 without restraints) Performing minimization step: 179. Total energy = 6885.1392 kcal/mol (6881.9185 without restraints) Performing minimization step: 180. Total energy = 6872.8345 kcal/mol (6869.6200 without restraints) Performing minimization step: 181. Total energy = 6860.5666 kcal/mol (6857.3583 without restraints) Performing minimization step: 182. Total energy = 6848.3355 kcal/mol (6845.1332 without restraints) Performing minimization step: 183. Total energy = 6836.1407 kcal/mol (6832.9446 without restraints) Performing minimization step: 184. Total energy = 6823.9821 kcal/mol (6820.7920 without restraints) Performing minimization step: 185. Total energy = 6811.8594 kcal/mol (6808.6754 without restraints) Performing minimization step: 186. Total energy = 6799.7724 kcal/mol (6796.5943 without restraints) Performing minimization step: 187. Total energy = 6787.7208 kcal/mol (6784.5487 without restraints) Performing minimization step: 188. Total energy = 6775.7044 kcal/mol (6772.5383 without restraints) Performing minimization step: 189. Total energy = 6763.7231 kcal/mol (6760.5629 without restraints) Performing minimization step: 190. Total energy = 6751.7763 kcal/mol (6748.6220 without restraints) Performing minimization step: 191. Total energy = 6739.8642 kcal/mol (6736.7159 without restraints) Performing minimization step: 192. Total energy = 6727.9865 kcal/mol (6724.8440 without restraints) Performing minimization step: 193. Total energy = 6716.1430 kcal/mol (6713.0063 without restraints) Performing minimization step: 194. Total energy = 6704.3335 kcal/mol (6701.2027 without restraints) Performing minimization step: 195. Total energy = 6692.5576 kcal/mol (6689.4325 without restraints) Performing minimization step: 196. Total energy = 6680.8151 kcal/mol (6677.6958 without restraints) Performing minimization step: 197. Total energy = 6669.1061 kcal/mol (6665.9925 without restraints) Performing minimization step: 198. Total energy = 6657.4301 kcal/mol (6654.3223 without restraints) Performing minimization step: 199. Total energy = 6645.7870 kcal/mol (6642.6849 without restraints) Performing minimization step: 200. Total energy = 6634.1768 kcal/mol (6631.0805 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 201. Total energy = 6622.5992 kcal/mol (6619.5085 without restraints) Performing minimization step: 202. Total energy = 6611.0539 kcal/mol (6607.9687 without restraints) Performing minimization step: 203. Total energy = 6599.5405 kcal/mol (6596.4609 without restraints) Performing minimization step: 204. Total energy = 6588.0592 kcal/mol (6584.9853 without restraints) Performing minimization step: 205. Total energy = 6576.6099 kcal/mol (6573.5415 without restraints) Performing minimization step: 206. Total energy = 6565.1922 kcal/mol (6562.1294 without restraints) Performing minimization step: 207. Total energy = 6553.8058 kcal/mol (6550.7485 without restraints) Performing minimization step: 208. Total energy = 6542.4511 kcal/mol (6539.3993 without restraints) Performing minimization step: 209. Total energy = 6531.1273 kcal/mol (6528.0810 without restraints) Performing minimization step: 210. Total energy = 6519.8345 kcal/mol (6516.7938 without restraints) Performing minimization step: 211. Total energy = 6508.5725 kcal/mol (6505.5373 without restraints) Performing minimization step: 212. Total energy = 6497.3412 kcal/mol (6494.3114 without restraints) Performing minimization step: 213. Total energy = 6486.1404 kcal/mol (6483.1160 without restraints) Performing minimization step: 214. Total energy = 6474.9699 kcal/mol (6471.9509 without restraints) Performing minimization step: 215. Total energy = 6463.8294 kcal/mol (6460.8157 without restraints) Performing minimization step: 216. Total energy = 6452.7191 kcal/mol (6449.7108 without restraints) Performing minimization step: 217. Total energy = 6441.6386 kcal/mol (6438.6357 without restraints) Performing minimization step: 218. Total energy = 6430.5882 kcal/mol (6427.5906 without restraints) Performing minimization step: 219. Total energy = 6419.5677 kcal/mol (6416.5755 without restraints) Performing minimization step: 220. Total energy = 6408.5761 kcal/mol (6405.5891 without restraints) Performing minimization step: 221. Total energy = 6397.6137 kcal/mol (6394.6321 without restraints) Performing minimization step: 222. Total energy = 6386.6808 kcal/mol (6383.7044 without restraints) Performing minimization step: 223. Total energy = 6375.7766 kcal/mol (6372.8055 without restraints) Performing minimization step: 224. Total energy = 6364.9012 kcal/mol (6361.9353 without restraints) Performing minimization step: 225. Total energy = 6354.0546 kcal/mol (6351.0940 without restraints) Performing minimization step: 226. Total energy = 6343.2364 kcal/mol (6340.2810 without restraints) Performing minimization step: 227. Total energy = 6332.4469 kcal/mol (6329.4967 without restraints) Performing minimization step: 228. Total energy = 6321.6857 kcal/mol (6318.7406 without restraints) Performing minimization step: 229. Total energy = 6310.9527 kcal/mol (6308.0128 without restraints) Performing minimization step: 230. Total energy = 6300.2479 kcal/mol (6297.3131 without restraints) Performing minimization step: 231. Total energy = 6289.5710 kcal/mol (6286.6413 without restraints) Performing minimization step: 232. Total energy = 6278.9219 kcal/mol (6275.9974 without restraints) Performing minimization step: 233. Total energy = 6268.3005 kcal/mol (6265.3811 without restraints) Performing minimization step: 234. Total energy = 6257.7071 kcal/mol (6254.7928 without restraints) Performing minimization step: 235. Total energy = 6247.1408 kcal/mol (6244.2315 without restraints) Performing minimization step: 236. Total energy = 6236.6018 kcal/mol (6233.6976 without restraints) Performing minimization step: 237. Total energy = 6226.0901 kcal/mol (6223.1910 without restraints) Performing minimization step: 238. Total energy = 6215.6055 kcal/mol (6212.7114 without restraints) Performing minimization step: 239. Total energy = 6205.1478 kcal/mol (6202.2587 without restraints) Performing minimization step: 240. Total energy = 6194.7170 kcal/mol (6191.8330 without restraints) Performing minimization step: 241. Total energy = 6184.3130 kcal/mol (6181.4339 without restraints) Performing minimization step: 242. Total energy = 6173.9356 kcal/mol (6171.0615 without restraints) Performing minimization step: 243. Total energy = 6163.5848 kcal/mol (6160.7157 without restraints) Performing minimization step: 244. Total energy = 6153.2604 kcal/mol (6150.3963 without restraints) Performing minimization step: 245. Total energy = 6142.9624 kcal/mol (6140.1031 without restraints) Performing minimization step: 246. Total energy = 6132.6905 kcal/mol (6129.8362 without restraints) Performing minimization step: 247. Total energy = 6122.4448 kcal/mol (6119.5954 without restraints) Performing minimization step: 248. Total energy = 6112.2251 kcal/mol (6109.3806 without restraints) Performing minimization step: 249. Total energy = 6102.0313 kcal/mol (6099.1917 without restraints) Performing minimization step: 250. Total energy = 6091.8632 kcal/mol (6089.0285 without restraints) Performing minimization step: 251. Total energy = 6081.7209 kcal/mol (6078.8911 without restraints) Performing minimization step: 252. Total energy = 6071.6044 kcal/mol (6068.7794 without restraints) Performing minimization step: 253. Total energy = 6061.5132 kcal/mol (6058.6931 without restraints) Performing minimization step: 254. Total energy = 6051.4475 kcal/mol (6048.6322 without restraints) Performing minimization step: 255. Total energy = 6041.4073 kcal/mol (6038.5968 without restraints) Performing minimization step: 256. Total energy = 6031.3922 kcal/mol (6028.5865 without restraints) Performing minimization step: 257. Total energy = 6021.4021 kcal/mol (6018.6012 without restraints) Performing minimization step: 258. Total energy = 6011.4370 kcal/mol (6008.6409 without restraints) Performing minimization step: 259. Total energy = 6001.4969 kcal/mol (5998.7055 without restraints) Performing minimization step: 260. Total energy = 5991.5814 kcal/mol (5988.7947 without restraints) Performing minimization step: 261. Total energy = 5981.6909 kcal/mol (5978.9091 without restraints) Performing minimization step: 262. Total energy = 5971.8250 kcal/mol (5969.0479 without restraints) Performing minimization step: 263. Total energy = 5961.9839 kcal/mol (5959.2115 without restraints) Performing minimization step: 264. Total energy = 5952.1672 kcal/mol (5949.3996 without restraints) Performing minimization step: 265. Total energy = 5942.3748 kcal/mol (5939.6119 without restraints) Performing minimization step: 266. Total energy = 5932.6066 kcal/mol (5929.8484 without restraints) Performing minimization step: 267. Total energy = 5922.8627 kcal/mol (5920.1092 without restraints) Performing minimization step: 268. Total energy = 5913.1429 kcal/mol (5910.3940 without restraints) Performing minimization step: 269. Total energy = 5903.4471 kcal/mol (5900.7029 without restraints) Performing minimization step: 270. Total energy = 5893.7756 kcal/mol (5891.0360 without restraints) Performing minimization step: 271. Total energy = 5884.1277 kcal/mol (5881.3928 without restraints) Performing minimization step: 272. Total energy = 5874.5037 kcal/mol (5871.7734 without restraints) Performing minimization step: 273. Total energy = 5864.9034 kcal/mol (5862.1779 without restraints) Performing minimization step: 274. Total energy = 5855.3268 kcal/mol (5852.6058 without restraints) Performing minimization step: 275. Total energy = 5845.7737 kcal/mol (5843.0572 without restraints) Performing minimization step: 276. Total energy = 5836.2440 kcal/mol (5833.5322 without restraints) Performing minimization step: 277. Total energy = 5826.7377 kcal/mol (5824.0305 without restraints) Performing minimization step: 278. Total energy = 5817.2548 kcal/mol (5814.5521 without restraints) Performing minimization step: 279. Total energy = 5807.7951 kcal/mol (5805.0970 without restraints) Performing minimization step: 280. Total energy = 5798.3586 kcal/mol (5795.6650 without restraints) Performing minimization step: 281. Total energy = 5788.9454 kcal/mol (5786.2564 without restraints) Performing minimization step: 282. Total energy = 5779.5549 kcal/mol (5776.8703 without restraints) Performing minimization step: 283. Total energy = 5770.1873 kcal/mol (5767.5074 without restraints) Performing minimization step: 284. Total energy = 5760.8428 kcal/mol (5758.1673 without restraints) Performing minimization step: 285. Total energy = 5751.5208 kcal/mol (5748.8499 without restraints) Performing minimization step: 286. Total energy = 5742.2218 kcal/mol (5739.5553 without restraints) Performing minimization step: 287. Total energy = 5732.9454 kcal/mol (5730.2834 without restraints) Performing minimization step: 288. Total energy = 5723.6916 kcal/mol (5721.0341 without restraints) Performing minimization step: 289. Total energy = 5714.4602 kcal/mol (5711.8072 without restraints) Performing minimization step: 290. Total energy = 5705.2513 kcal/mol (5702.6028 without restraints) Performing minimization step: 291. Total energy = 5696.0650 kcal/mol (5693.4210 without restraints) Performing minimization step: 292. Total energy = 5686.9010 kcal/mol (5684.2614 without restraints) Performing minimization step: 293. Total energy = 5677.7591 kcal/mol (5675.1239 without restraints) Performing minimization step: 294. Total energy = 5668.6392 kcal/mol (5666.0084 without restraints) Performing minimization step: 295. Total energy = 5659.5415 kcal/mol (5656.9151 without restraints) Performing minimization step: 296. Total energy = 5650.4656 kcal/mol (5647.8437 without restraints) Performing minimization step: 297. Total energy = 5641.4118 kcal/mol (5638.7942 without restraints) Performing minimization step: 298. Total energy = 5632.3800 kcal/mol (5629.7668 without restraints) Performing minimization step: 299. Total energy = 5623.3699 kcal/mol (5620.7611 without restraints) Performing minimization step: 300. Total energy = 5614.3816 kcal/mol (5611.7771 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 301. Total energy = 5605.4151 kcal/mol (5602.8151 without restraints) Performing minimization step: 302. Total energy = 5596.4703 kcal/mol (5593.8746 without restraints) Performing minimization step: 303. Total energy = 5587.5471 kcal/mol (5584.9557 without restraints) Performing minimization step: 304. Total energy = 5578.6451 kcal/mol (5576.0581 without restraints) Performing minimization step: 305. Total energy = 5569.7649 kcal/mol (5567.1822 without restraints) Performing minimization step: 306. Total energy = 5560.9060 kcal/mol (5558.3276 without restraints) Performing minimization step: 307. Total energy = 5552.0684 kcal/mol (5549.4944 without restraints) Performing minimization step: 308. Total energy = 5543.2521 kcal/mol (5540.6824 without restraints) Performing minimization step: 309. Total energy = 5534.4571 kcal/mol (5531.8916 without restraints) Performing minimization step: 310. Total energy = 5525.6833 kcal/mol (5523.1222 without restraints) Performing minimization step: 311. Total energy = 5516.9305 kcal/mol (5514.3736 without restraints) Performing minimization step: 312. Total energy = 5508.1987 kcal/mol (5505.6461 without restraints) Performing minimization step: 313. Total energy = 5499.4878 kcal/mol (5496.9395 without restraints) Performing minimization step: 314. Total energy = 5490.7979 kcal/mol (5488.2538 without restraints) Performing minimization step: 315. Total energy = 5482.1289 kcal/mol (5479.5890 without restraints) Performing minimization step: 316. Total energy = 5473.4805 kcal/mol (5470.9449 without restraints) Performing minimization step: 317. Total energy = 5464.8529 kcal/mol (5462.3216 without restraints) Performing minimization step: 318. Total energy = 5456.2460 kcal/mol (5453.7189 without restraints) Performing minimization step: 319. Total energy = 5447.6595 kcal/mol (5445.1366 without restraints) Performing minimization step: 320. Total energy = 5439.0938 kcal/mol (5436.5751 without restraints) Performing minimization step: 321. Total energy = 5430.5486 kcal/mol (5428.0340 without restraints) Performing minimization step: 322. Total energy = 5422.0238 kcal/mol (5419.5135 without restraints) Performing minimization step: 323. Total energy = 5413.5194 kcal/mol (5411.0133 without restraints) Performing minimization step: 324. Total energy = 5405.0354 kcal/mol (5402.5334 without restraints) Performing minimization step: 325. Total energy = 5396.5716 kcal/mol (5394.0738 without restraints) Performing minimization step: 326. Total energy = 5388.1281 kcal/mol (5385.6345 without restraints) Performing minimization step: 327. Total energy = 5379.7047 kcal/mol (5377.2152 without restraints) Performing minimization step: 328. Total energy = 5371.3015 kcal/mol (5368.8162 without restraints) Performing minimization step: 329. Total energy = 5362.9183 kcal/mol (5360.4371 without restraints) Performing minimization step: 330. Total energy = 5354.5556 kcal/mol (5352.0786 without restraints) Performing minimization step: 331. Total energy = 5346.2124 kcal/mol (5343.7394 without restraints) Performing minimization step: 332. Total energy = 5337.8891 kcal/mol (5335.4203 without restraints) Performing minimization step: 333. Total energy = 5329.5857 kcal/mol (5327.1209 without restraints) Performing minimization step: 334. Total energy = 5321.3020 kcal/mol (5318.8414 without restraints) Performing minimization step: 335. Total energy = 5313.0382 kcal/mol (5310.5817 without restraints) Performing minimization step: 336. Total energy = 5304.7940 kcal/mol (5302.3416 without restraints) Performing minimization step: 337. Total energy = 5296.5695 kcal/mol (5294.1211 without restraints) Performing minimization step: 338. Total energy = 5288.3647 kcal/mol (5285.9205 without restraints) Performing minimization step: 339. Total energy = 5280.1794 kcal/mol (5277.7392 without restraints) Performing minimization step: 340. Total energy = 5272.0135 kcal/mol (5269.5773 without restraints) Performing minimization step: 341. Total energy = 5263.8671 kcal/mol (5261.4349 without restraints) Performing minimization step: 342. Total energy = 5255.7400 kcal/mol (5253.3119 without restraints) Performing minimization step: 343. Total energy = 5247.6323 kcal/mol (5245.2083 without restraints) Performing minimization step: 344. Total energy = 5239.5439 kcal/mol (5237.1239 without restraints) Performing minimization step: 345. Total energy = 5231.4748 kcal/mol (5229.0588 without restraints) Performing minimization step: 346. Total energy = 5223.4251 kcal/mol (5221.0131 without restraints) Performing minimization step: 347. Total energy = 5215.3943 kcal/mol (5212.9863 without restraints) Performing minimization step: 348. Total energy = 5207.3827 kcal/mol (5204.9788 without restraints) Performing minimization step: 349. Total energy = 5199.3901 kcal/mol (5196.9902 without restraints) Performing minimization step: 350. Total energy = 5191.4165 kcal/mol (5189.0205 without restraints) Performing minimization step: 351. Total energy = 5183.4618 kcal/mol (5181.0698 without restraints) Performing minimization step: 352. Total energy = 5175.5260 kcal/mol (5173.1380 without restraints) Performing minimization step: 353. Total energy = 5167.6091 kcal/mol (5165.2250 without restraints) Performing minimization step: 354. Total energy = 5159.7110 kcal/mol (5157.3308 without restraints) Performing minimization step: 355. Total energy = 5151.8314 kcal/mol (5149.4552 without restraints) Performing minimization step: 356. Total energy = 5143.9708 kcal/mol (5141.5986 without restraints) Performing minimization step: 357. Total energy = 5136.1289 kcal/mol (5133.7606 without restraints) Performing minimization step: 358. Total energy = 5128.3056 kcal/mol (5125.9412 without restraints) Performing minimization step: 359. Total energy = 5120.5009 kcal/mol (5118.1404 without restraints) Performing minimization step: 360. Total energy = 5112.7147 kcal/mol (5110.3582 without restraints) Performing minimization step: 361. Total energy = 5104.9470 kcal/mol (5102.5944 without restraints) Performing minimization step: 362. Total energy = 5097.1980 kcal/mol (5094.8492 without restraints) Performing minimization step: 363. Total energy = 5089.4671 kcal/mol (5087.1223 without restraints) Performing minimization step: 364. Total energy = 5081.7546 kcal/mol (5079.4136 without restraints) Performing minimization step: 365. Total energy = 5074.0604 kcal/mol (5071.7233 without restraints) Performing minimization step: 366. Total energy = 5066.3845 kcal/mol (5064.0513 without restraints) Performing minimization step: 367. Total energy = 5058.7268 kcal/mol (5056.3974 without restraints) Performing minimization step: 368. Total energy = 5051.0873 kcal/mol (5048.7618 without restraints) Performing minimization step: 369. Total energy = 5043.4659 kcal/mol (5041.1442 without restraints) Performing minimization step: 370. Total energy = 5035.8626 kcal/mol (5033.5448 without restraints) Performing minimization step: 371. Total energy = 5028.2773 kcal/mol (5025.9634 without restraints) Performing minimization step: 372. Total energy = 5020.7101 kcal/mol (5018.4001 without restraints) Performing minimization step: 373. Total energy = 5013.1604 kcal/mol (5010.8541 without restraints) Performing minimization step: 374. Total energy = 5005.6291 kcal/mol (5003.3266 without restraints) Performing minimization step: 375. Total energy = 4998.1156 kcal/mol (4995.8169 without restraints) Performing minimization step: 376. Total energy = 4990.6199 kcal/mol (4988.3251 without restraints) Performing minimization step: 377. Total energy = 4983.1420 kcal/mol (4980.8510 without restraints) Performing minimization step: 378. Total energy = 4975.6819 kcal/mol (4973.3946 without restraints) Performing minimization step: 379. Total energy = 4968.2396 kcal/mol (4965.9562 without restraints) Performing minimization step: 380. Total energy = 4960.8149 kcal/mol (4958.5352 without restraints) Performing minimization step: 381. Total energy = 4953.4079 kcal/mol (4951.1319 without restraints) Performing minimization step: 382. Total energy = 4946.0183 kcal/mol (4943.7461 without restraints) Performing minimization step: 383. Total energy = 4938.6462 kcal/mol (4936.3778 without restraints) Performing minimization step: 384. Total energy = 4931.2917 kcal/mol (4929.0270 without restraints) Performing minimization step: 385. Total energy = 4923.9546 kcal/mol (4921.6936 without restraints) Performing minimization step: 386. Total energy = 4916.6349 kcal/mol (4914.3777 without restraints) Performing minimization step: 387. Total energy = 4909.3326 kcal/mol (4907.0791 without restraints) Performing minimization step: 388. Total energy = 4902.0477 kcal/mol (4899.7980 without restraints) Performing minimization step: 389. Total energy = 4894.7800 kcal/mol (4892.5339 without restraints) Performing minimization step: 390. Total energy = 4887.5293 kcal/mol (4885.2868 without restraints) Performing minimization step: 391. Total energy = 4880.2957 kcal/mol (4878.0570 without restraints) Performing minimization step: 392. Total energy = 4873.0795 kcal/mol (4870.8446 without restraints) Performing minimization step: 393. Total energy = 4865.8809 kcal/mol (4863.6497 without restraints) Performing minimization step: 394. Total energy = 4858.6988 kcal/mol (4856.4712 without restraints) Performing minimization step: 395. Total energy = 4851.5339 kcal/mol (4849.3100 without restraints) Performing minimization step: 396. Total energy = 4844.3860 kcal/mol (4842.1658 without restraints) Performing minimization step: 397. Total energy = 4837.2548 kcal/mol (4835.0383 without restraints) Performing minimization step: 398. Total energy = 4830.1408 kcal/mol (4827.9279 without restraints) Performing minimization step: 399. Total energy = 4823.0437 kcal/mol (4820.8344 without restraints) Performing minimization step: 400. Total energy = 4815.9631 kcal/mol (4813.7575 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 401. Total energy = 4808.8997 kcal/mol (4806.6977 without restraints) Performing minimization step: 402. Total energy = 4801.8529 kcal/mol (4799.6546 without restraints) Performing minimization step: 403. Total energy = 4794.8227 kcal/mol (4792.6278 without restraints) Performing minimization step: 404. Total energy = 4787.8091 kcal/mol (4785.6180 without restraints) Performing minimization step: 405. Total energy = 4780.8124 kcal/mol (4778.6249 without restraints) Performing minimization step: 406. Total energy = 4773.8323 kcal/mol (4771.6485 without restraints) Performing minimization step: 407. Total energy = 4766.8688 kcal/mol (4764.6885 without restraints) Performing minimization step: 408. Total energy = 4759.9220 kcal/mol (4757.7453 without restraints) Performing minimization step: 409. Total energy = 4752.9915 kcal/mol (4750.8184 without restraints) Performing minimization step: 410. Total energy = 4746.0774 kcal/mol (4743.9079 without restraints) Performing minimization step: 411. Total energy = 4739.1798 kcal/mol (4737.0138 without restraints) Performing minimization step: 412. Total energy = 4732.2984 kcal/mol (4730.1360 without restraints) Performing minimization step: 413. Total energy = 4725.4334 kcal/mol (4723.2746 without restraints) Performing minimization step: 414. Total energy = 4718.5845 kcal/mol (4716.4292 without restraints) Performing minimization step: 415. Total energy = 4711.7520 kcal/mol (4709.6003 without restraints) Performing minimization step: 416. Total energy = 4704.9359 kcal/mol (4702.7877 without restraints) Performing minimization step: 417. Total energy = 4698.1358 kcal/mol (4695.9912 without restraints) Performing minimization step: 418. Total energy = 4691.3519 kcal/mol (4689.2108 without restraints) Performing minimization step: 419. Total energy = 4684.5841 kcal/mol (4682.4464 without restraints) Performing minimization step: 420. Total energy = 4677.8323 kcal/mol (4675.6982 without restraints) Performing minimization step: 421. Total energy = 4671.0966 kcal/mol (4668.9660 without restraints) Performing minimization step: 422. Total energy = 4664.3769 kcal/mol (4662.2498 without restraints) Performing minimization step: 423. Total energy = 4657.6731 kcal/mol (4655.5495 without restraints) Performing minimization step: 424. Total energy = 4650.9853 kcal/mol (4648.8651 without restraints) Performing minimization step: 425. Total energy = 4644.3133 kcal/mol (4642.1967 without restraints) Performing minimization step: 426. Total energy = 4637.6574 kcal/mol (4635.5443 without restraints) Performing minimization step: 427. Total energy = 4631.0172 kcal/mol (4628.9074 without restraints) Performing minimization step: 428. Total energy = 4624.3926 kcal/mol (4622.2864 without restraints) Performing minimization step: 429. Total energy = 4617.7838 kcal/mol (4615.6810 without restraints) Performing minimization step: 430. Total energy = 4611.1909 kcal/mol (4609.0915 without restraints) Performing minimization step: 431. Total energy = 4604.6134 kcal/mol (4602.5175 without restraints) Performing minimization step: 432. Total energy = 4598.0516 kcal/mol (4595.9591 without restraints) Performing minimization step: 433. Total energy = 4591.5053 kcal/mol (4589.4162 without restraints) Performing minimization step: 434. Total energy = 4584.9745 kcal/mol (4582.8890 without restraints) Performing minimization step: 435. Total energy = 4578.4594 kcal/mol (4576.3772 without restraints) Performing minimization step: 436. Total energy = 4571.9597 kcal/mol (4569.8809 without restraints) Performing minimization step: 437. Total energy = 4565.4751 kcal/mol (4563.3997 without restraints) Performing minimization step: 438. Total energy = 4559.0062 kcal/mol (4556.9342 without restraints) Performing minimization step: 439. Total energy = 4552.5527 kcal/mol (4550.4840 without restraints) Performing minimization step: 440. Total energy = 4546.1144 kcal/mol (4544.0492 without restraints) Performing minimization step: 441. Total energy = 4539.6915 kcal/mol (4537.6297 without restraints) Performing minimization step: 442. Total energy = 4533.2838 kcal/mol (4531.2253 without restraints) Performing minimization step: 443. Total energy = 4526.8914 kcal/mol (4524.8362 without restraints) Performing minimization step: 444. Total energy = 4520.5141 kcal/mol (4518.4623 without restraints) Performing minimization step: 445. Total energy = 4514.1520 kcal/mol (4512.1036 without restraints) Performing minimization step: 446. Total energy = 4507.8052 kcal/mol (4505.7601 without restraints) Performing minimization step: 447. Total energy = 4501.4732 kcal/mol (4499.4315 without restraints) Performing minimization step: 448. Total energy = 4495.1563 kcal/mol (4493.1179 without restraints) Performing minimization step: 449. Total energy = 4488.8544 kcal/mol (4486.8193 without restraints) Performing minimization step: 450. Total energy = 4482.5674 kcal/mol (4480.5356 without restraints) Performing minimization step: 451. Total energy = 4476.2954 kcal/mol (4474.2669 without restraints) Performing minimization step: 452. Total energy = 4470.0382 kcal/mol (4468.0131 without restraints) Performing minimization step: 453. Total energy = 4463.7959 kcal/mol (4461.7741 without restraints) Performing minimization step: 454. Total energy = 4457.5685 kcal/mol (4455.5499 without restraints) Performing minimization step: 455. Total energy = 4451.3558 kcal/mol (4449.3405 without restraints) Performing minimization step: 456. Total energy = 4445.1579 kcal/mol (4443.1459 without restraints) Performing minimization step: 457. Total energy = 4438.9747 kcal/mol (4436.9660 without restraints) Performing minimization step: 458. Total energy = 4432.8064 kcal/mol (4430.8009 without restraints) Performing minimization step: 459. Total energy = 4426.6525 kcal/mol (4424.6503 without restraints) Performing minimization step: 460. Total energy = 4420.5136 kcal/mol (4418.5147 without restraints) Performing minimization step: 461. Total energy = 4414.3889 kcal/mol (4412.3932 without restraints) Performing minimization step: 462. Total energy = 4408.2788 kcal/mol (4406.2863 without restraints) Performing minimization step: 463. Total energy = 4402.1830 kcal/mol (4400.1937 without restraints) Performing minimization step: 464. Total energy = 4396.1018 kcal/mol (4394.1158 without restraints) Performing minimization step: 465. Total energy = 4390.0351 kcal/mol (4388.0523 without restraints) Performing minimization step: 466. Total energy = 4383.9827 kcal/mol (4382.0032 without restraints) Performing minimization step: 467. Total energy = 4377.9448 kcal/mol (4375.9684 without restraints) Performing minimization step: 468. Total energy = 4371.9211 kcal/mol (4369.9480 without restraints) Performing minimization step: 469. Total energy = 4365.9120 kcal/mol (4363.9421 without restraints) Performing minimization step: 470. Total energy = 4359.9172 kcal/mol (4357.9504 without restraints) Performing minimization step: 471. Total energy = 4353.9363 kcal/mol (4351.9727 without restraints) Performing minimization step: 472. Total energy = 4347.9697 kcal/mol (4346.0093 without restraints) Performing minimization step: 473. Total energy = 4342.0172 kcal/mol (4340.0599 without restraints) Performing minimization step: 474. Total energy = 4336.0788 kcal/mol (4334.1247 without restraints) Performing minimization step: 475. Total energy = 4330.1545 kcal/mol (4328.2035 without restraints) Performing minimization step: 476. Total energy = 4324.2442 kcal/mol (4322.2964 without restraints) Performing minimization step: 477. Total energy = 4318.3480 kcal/mol (4316.4033 without restraints) Performing minimization step: 478. Total energy = 4312.4656 kcal/mol (4310.5241 without restraints) Performing minimization step: 479. Total energy = 4306.5973 kcal/mol (4304.6589 without restraints) Performing minimization step: 480. Total energy = 4300.7429 kcal/mol (4298.8077 without restraints) Performing minimization step: 481. Total energy = 4294.9025 kcal/mol (4292.9703 without restraints) Performing minimization step: 482. Total energy = 4289.0763 kcal/mol (4287.1472 without restraints) Performing minimization step: 483. Total energy = 4283.2635 kcal/mol (4281.3376 without restraints) Performing minimization step: 484. Total energy = 4277.4644 kcal/mol (4275.5416 without restraints) Performing minimization step: 485. Total energy = 4271.6792 kcal/mol (4269.7595 without restraints) Performing minimization step: 486. Total energy = 4265.9076 kcal/mol (4263.9910 without restraints) Performing minimization step: 487. Total energy = 4260.1497 kcal/mol (4258.2362 without restraints) Performing minimization step: 488. Total energy = 4254.4055 kcal/mol (4252.4950 without restraints) Performing minimization step: 489. Total energy = 4248.6749 kcal/mol (4246.7675 without restraints) Performing minimization step: 490. Total energy = 4242.9580 kcal/mol (4241.0537 without restraints) Performing minimization step: 491. Total energy = 4237.2541 kcal/mol (4235.3528 without restraints) Performing minimization step: 492. Total energy = 4231.5638 kcal/mol (4229.6656 without restraints) Performing minimization step: 493. Total energy = 4225.8873 kcal/mol (4223.9921 without restraints) Performing minimization step: 494. Total energy = 4220.2240 kcal/mol (4218.3318 without restraints) Performing minimization step: 495. Total energy = 4214.5743 kcal/mol (4212.6851 without restraints) Performing minimization step: 496. Total energy = 4208.9380 kcal/mol (4207.0518 without restraints) Performing minimization step: 497. Total energy = 4203.3150 kcal/mol (4201.4319 without restraints) Performing minimization step: 498. Total energy = 4197.7053 kcal/mol (4195.8252 without restraints) Performing minimization step: 499. Total energy = 4192.1089 kcal/mol (4190.2318 without restraints) Performing minimization step: 500. Total energy = 4186.5258 kcal/mol (4184.6517 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 501. Total energy = 4180.9559 kcal/mol (4179.0848 without restraints) Performing minimization step: 502. Total energy = 4175.3991 kcal/mol (4173.5310 without restraints) Performing minimization step: 503. Total energy = 4169.8555 kcal/mol (4167.9903 without restraints) Performing minimization step: 504. Total energy = 4164.3249 kcal/mol (4162.4626 without restraints) Performing minimization step: 505. Total energy = 4158.8073 kcal/mol (4156.9481 without restraints) Performing minimization step: 506. Total energy = 4153.3029 kcal/mol (4151.4467 without restraints) Performing minimization step: 507. Total energy = 4147.8113 kcal/mol (4145.9580 without restraints) Performing minimization step: 508. Total energy = 4142.3328 kcal/mol (4140.4825 without restraints) Performing minimization step: 509. Total energy = 4136.8674 kcal/mol (4135.0199 without restraints) Performing minimization step: 510. Total energy = 4131.4145 kcal/mol (4129.5700 without restraints) Performing minimization step: 511. Total energy = 4125.9748 kcal/mol (4124.1333 without restraints) Performing minimization step: 512. Total energy = 4120.5480 kcal/mol (4118.7093 without restraints) Performing minimization step: 513. Total energy = 4115.1339 kcal/mol (4113.2982 without restraints) Performing minimization step: 514. Total energy = 4109.7327 kcal/mol (4107.8998 without restraints) Performing minimization step: 515. Total energy = 4104.3441 kcal/mol (4102.5142 without restraints) Performing minimization step: 516. Total energy = 4098.9681 kcal/mol (4097.1411 without restraints) Performing minimization step: 517. Total energy = 4093.6051 kcal/mol (4091.7810 without restraints) Performing minimization step: 518. Total energy = 4088.2546 kcal/mol (4086.4334 without restraints) Performing minimization step: 519. Total energy = 4082.9167 kcal/mol (4081.0983 without restraints) Performing minimization step: 520. Total energy = 4077.5914 kcal/mol (4075.7759 without restraints) Performing minimization step: 521. Total energy = 4072.2789 kcal/mol (4070.4662 without restraints) Performing minimization step: 522. Total energy = 4066.9786 kcal/mol (4065.1688 without restraints) Performing minimization step: 523. Total energy = 4061.6907 kcal/mol (4059.8837 without restraints) Performing minimization step: 524. Total energy = 4056.4153 kcal/mol (4054.6112 without restraints) Performing minimization step: 525. Total energy = 4051.1526 kcal/mol (4049.3513 without restraints) Performing minimization step: 526. Total energy = 4045.9021 kcal/mol (4044.1037 without restraints) Performing minimization step: 527. Total energy = 4040.6641 kcal/mol (4038.8685 without restraints) Performing minimization step: 528. Total energy = 4035.4383 kcal/mol (4033.6455 without restraints) Performing minimization step: 529. Total energy = 4030.2246 kcal/mol (4028.4347 without restraints) Performing minimization step: 530. Total energy = 4025.0233 kcal/mol (4023.2361 without restraints) Performing minimization step: 531. Total energy = 4019.8342 kcal/mol (4018.0498 without restraints) Performing minimization step: 532. Total energy = 4014.6574 kcal/mol (4012.8759 without restraints) Performing minimization step: 533. Total energy = 4009.4927 kcal/mol (4007.7139 without restraints) Performing minimization step: 534. Total energy = 4004.3402 kcal/mol (4002.5642 without restraints) Performing minimization step: 535. Total energy = 3999.1996 kcal/mol (3997.4264 without restraints) Performing minimization step: 536. Total energy = 3994.0711 kcal/mol (3992.3006 without restraints) Performing minimization step: 537. Total energy = 3988.9546 kcal/mol (3987.1869 without restraints) Performing minimization step: 538. Total energy = 3983.8498 kcal/mol (3982.0847 without restraints) Performing minimization step: 539. Total energy = 3978.7569 kcal/mol (3976.9947 without restraints) Performing minimization step: 540. Total energy = 3973.6763 kcal/mol (3971.9169 without restraints) Performing minimization step: 541. Total energy = 3968.6076 kcal/mol (3966.8509 without restraints) Performing minimization step: 542. Total energy = 3963.5508 kcal/mol (3961.7968 without restraints) Performing minimization step: 543. Total energy = 3958.5058 kcal/mol (3956.7545 without restraints) Performing minimization step: 544. Total energy = 3953.4725 kcal/mol (3951.7240 without restraints) Performing minimization step: 545. Total energy = 3948.4510 kcal/mol (3946.7052 without restraints) Performing minimization step: 546. Total energy = 3943.4413 kcal/mol (3941.6982 without restraints) Performing minimization step: 547. Total energy = 3938.4433 kcal/mol (3936.7028 without restraints) Performing minimization step: 548. Total energy = 3933.4566 kcal/mol (3931.7187 without restraints) Performing minimization step: 549. Total energy = 3928.4819 kcal/mol (3926.7469 without restraints) Performing minimization step: 550. Total energy = 3923.5188 kcal/mol (3921.7864 without restraints) Performing minimization step: 551. Total energy = 3918.5673 kcal/mol (3916.8376 without restraints) Performing minimization step: 552. Total energy = 3913.6274 kcal/mol (3911.9005 without restraints) Performing minimization step: 553. Total energy = 3908.6991 kcal/mol (3906.9746 without restraints) Performing minimization step: 554. Total energy = 3903.7821 kcal/mol (3902.0603 without restraints) Performing minimization step: 555. Total energy = 3898.8765 kcal/mol (3897.1574 without restraints) Performing minimization step: 556. Total energy = 3893.9825 kcal/mol (3892.2662 without restraints) Performing minimization step: 557. Total energy = 3889.0999 kcal/mol (3887.3861 without restraints) Performing minimization step: 558. Total energy = 3884.2289 kcal/mol (3882.5177 without restraints) Performing minimization step: 559. Total energy = 3879.3688 kcal/mol (3877.6602 without restraints) Performing minimization step: 560. Total energy = 3874.5200 kcal/mol (3872.8141 without restraints) Performing minimization step: 561. Total energy = 3869.6827 kcal/mol (3867.9794 without restraints) Performing minimization step: 562. Total energy = 3864.8565 kcal/mol (3863.1557 without restraints) Performing minimization step: 563. Total energy = 3860.0413 kcal/mol (3858.3430 without restraints) Performing minimization step: 564. Total energy = 3855.2373 kcal/mol (3853.5417 without restraints) Performing minimization step: 565. Total energy = 3850.4442 kcal/mol (3848.7513 without restraints) Performing minimization step: 566. Total energy = 3845.6626 kcal/mol (3843.9722 without restraints) Performing minimization step: 567. Total energy = 3840.8920 kcal/mol (3839.2041 without restraints) Performing minimization step: 568. Total energy = 3836.1324 kcal/mol (3834.4471 without restraints) Performing minimization step: 569. Total energy = 3831.3838 kcal/mol (3829.7011 without restraints) Performing minimization step: 570. Total energy = 3826.6463 kcal/mol (3824.9661 without restraints) Performing minimization step: 571. Total energy = 3821.9197 kcal/mol (3820.2420 without restraints) Performing minimization step: 572. Total energy = 3817.2039 kcal/mol (3815.5289 without restraints) Performing minimization step: 573. Total energy = 3812.4991 kcal/mol (3810.8266 without restraints) Performing minimization step: 574. Total energy = 3807.8051 kcal/mol (3806.1351 without restraints) Performing minimization step: 575. Total energy = 3803.1220 kcal/mol (3801.4545 without restraints) Performing minimization step: 576. Total energy = 3798.4496 kcal/mol (3796.7846 without restraints) Performing minimization step: 577. Total energy = 3793.7880 kcal/mol (3792.1256 without restraints) Performing minimization step: 578. Total energy = 3789.1372 kcal/mol (3787.4772 without restraints) Performing minimization step: 579. Total energy = 3784.4970 kcal/mol (3782.8395 without restraints) Performing minimization step: 580. Total energy = 3779.8677 kcal/mol (3778.2128 without restraints) Performing minimization step: 581. Total energy = 3775.2489 kcal/mol (3773.5964 without restraints) Performing minimization step: 582. Total energy = 3770.6405 kcal/mol (3768.9904 without restraints) Performing minimization step: 583. Total energy = 3766.0428 kcal/mol (3764.3953 without restraints) Performing minimization step: 584. Total energy = 3761.4557 kcal/mol (3759.8106 without restraints) Performing minimization step: 585. Total energy = 3756.8791 kcal/mol (3755.2365 without restraints) Performing minimization step: 586. Total energy = 3752.3130 kcal/mol (3750.6728 without restraints) Performing minimization step: 587. Total energy = 3747.7573 kcal/mol (3746.1196 without restraints) Performing minimization step: 588. Total energy = 3743.2122 kcal/mol (3741.5770 without restraints) Performing minimization step: 589. Total energy = 3738.6769 kcal/mol (3737.0440 without restraints) Performing minimization step: 590. Total energy = 3734.1523 kcal/mol (3732.5219 without restraints) Performing minimization step: 591. Total energy = 3729.6379 kcal/mol (3728.0099 without restraints) Performing minimization step: 592. Total energy = 3725.1341 kcal/mol (3723.5085 without restraints) Performing minimization step: 593. Total energy = 3720.6406 kcal/mol (3719.0174 without restraints) Performing minimization step: 594. Total energy = 3716.1574 kcal/mol (3714.5365 without restraints) Performing minimization step: 595. Total energy = 3711.6842 kcal/mol (3710.0658 without restraints) Performing minimization step: 596. Total energy = 3707.2210 kcal/mol (3705.6050 without restraints) Performing minimization step: 597. Total energy = 3702.7685 kcal/mol (3701.1549 without restraints) Performing minimization step: 598. Total energy = 3698.3258 kcal/mol (3696.7146 without restraints) Performing minimization step: 599. Total energy = 3693.8932 kcal/mol (3692.2844 without restraints) Performing minimization step: 600. Total energy = 3689.4709 kcal/mol (3687.8645 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 601. Total energy = 3685.0585 kcal/mol (3683.4544 without restraints) Performing minimization step: 602. Total energy = 3680.6561 kcal/mol (3679.0544 without restraints) Performing minimization step: 603. Total energy = 3676.2636 kcal/mol (3674.6642 without restraints) Performing minimization step: 604. Total energy = 3671.8811 kcal/mol (3670.2841 without restraints) Performing minimization step: 605. Total energy = 3667.5083 kcal/mol (3665.9136 without restraints) Performing minimization step: 606. Total energy = 3663.1456 kcal/mol (3661.5532 without restraints) Performing minimization step: 607. Total energy = 3658.7929 kcal/mol (3657.2028 without restraints) Performing minimization step: 608. Total energy = 3654.4498 kcal/mol (3652.8621 without restraints) Performing minimization step: 609. Total energy = 3650.1166 kcal/mol (3648.5312 without restraints) Performing minimization step: 610. Total energy = 3645.7931 kcal/mol (3644.2101 without restraints) Performing minimization step: 611. Total energy = 3641.4794 kcal/mol (3639.8986 without restraints) Performing minimization step: 612. Total energy = 3637.1754 kcal/mol (3635.5969 without restraints) Performing minimization step: 613. Total energy = 3632.8811 kcal/mol (3631.3049 without restraints) Performing minimization step: 614. Total energy = 3628.5964 kcal/mol (3627.0225 without restraints) Performing minimization step: 615. Total energy = 3624.3213 kcal/mol (3622.7497 without restraints) Performing minimization step: 616. Total energy = 3620.0561 kcal/mol (3618.4867 without restraints) Performing minimization step: 617. Total energy = 3615.8002 kcal/mol (3614.2331 without restraints) Performing minimization step: 618. Total energy = 3611.5539 kcal/mol (3609.9890 without restraints) Performing minimization step: 619. Total energy = 3607.3170 kcal/mol (3605.7544 without restraints) Performing minimization step: 620. Total energy = 3603.0896 kcal/mol (3601.5293 without restraints) Performing minimization step: 621. Total energy = 3598.8717 kcal/mol (3597.3136 without restraints) Performing minimization step: 622. Total energy = 3594.6632 kcal/mol (3593.1074 without restraints) Performing minimization step: 623. Total energy = 3590.4644 kcal/mol (3588.9108 without restraints) Performing minimization step: 624. Total energy = 3586.2747 kcal/mol (3584.7233 without restraints) Performing minimization step: 625. Total energy = 3582.0942 kcal/mol (3580.5451 without restraints) Performing minimization step: 626. Total energy = 3577.9231 kcal/mol (3576.3762 without restraints) Performing minimization step: 627. Total energy = 3573.7613 kcal/mol (3572.2166 without restraints) Performing minimization step: 628. Total energy = 3569.6085 kcal/mol (3568.0660 without restraints) Performing minimization step: 629. Total energy = 3565.4651 kcal/mol (3563.9247 without restraints) Performing minimization step: 630. Total energy = 3561.3309 kcal/mol (3559.7927 without restraints) Performing minimization step: 631. Total energy = 3557.2061 kcal/mol (3555.6701 without restraints) Performing minimization step: 632. Total energy = 3553.0900 kcal/mol (3551.5562 without restraints) Performing minimization step: 633. Total energy = 3548.9833 kcal/mol (3547.4516 without restraints) Performing minimization step: 634. Total energy = 3544.8856 kcal/mol (3543.3561 without restraints) Performing minimization step: 635. Total energy = 3540.7970 kcal/mol (3539.2697 without restraints) Performing minimization step: 636. Total energy = 3536.7174 kcal/mol (3535.1922 without restraints) Performing minimization step: 637. Total energy = 3532.6466 kcal/mol (3531.1236 without restraints) Performing minimization step: 638. Total energy = 3528.5849 kcal/mol (3527.0641 without restraints) Performing minimization step: 639. Total energy = 3524.5322 kcal/mol (3523.0135 without restraints) Performing minimization step: 640. Total energy = 3520.4884 kcal/mol (3518.9719 without restraints) Performing minimization step: 641. Total energy = 3516.4535 kcal/mol (3514.9391 without restraints) Performing minimization step: 642. Total energy = 3512.4275 kcal/mol (3510.9152 without restraints) Performing minimization step: 643. Total energy = 3508.4103 kcal/mol (3506.9001 without restraints) Performing minimization step: 644. Total energy = 3504.4019 kcal/mol (3502.8938 without restraints) Performing minimization step: 645. Total energy = 3500.4024 kcal/mol (3498.8965 without restraints) Performing minimization step: 646. Total energy = 3496.4116 kcal/mol (3494.9078 without restraints) Performing minimization step: 647. Total energy = 3492.4296 kcal/mol (3490.9278 without restraints) Performing minimization step: 648. Total energy = 3488.4562 kcal/mol (3486.9565 without restraints) Performing minimization step: 649. Total energy = 3484.4914 kcal/mol (3482.9938 without restraints) Performing minimization step: 650. Total energy = 3480.5352 kcal/mol (3479.0397 without restraints) Performing minimization step: 651. Total energy = 3476.5875 kcal/mol (3475.0939 without restraints) Performing minimization step: 652. Total energy = 3472.6486 kcal/mol (3471.1573 without restraints) Performing minimization step: 653. Total energy = 3468.7185 kcal/mol (3467.2291 without restraints) Performing minimization step: 654. Total energy = 3464.7966 kcal/mol (3463.3094 without restraints) Performing minimization step: 655. Total energy = 3460.8833 kcal/mol (3459.3981 without restraints) Performing minimization step: 656. Total energy = 3456.9784 kcal/mol (3455.4952 without restraints) Performing minimization step: 657. Total energy = 3453.0820 kcal/mol (3451.6008 without restraints) Performing minimization step: 658. Total energy = 3449.1940 kcal/mol (3447.7149 without restraints) Performing minimization step: 659. Total energy = 3445.3143 kcal/mol (3443.8373 without restraints) Performing minimization step: 660. Total energy = 3441.4431 kcal/mol (3439.9680 without restraints) Performing minimization step: 661. Total energy = 3437.5802 kcal/mol (3436.1071 without restraints) Performing minimization step: 662. Total energy = 3433.7256 kcal/mol (3432.2545 without restraints) Performing minimization step: 663. Total energy = 3429.8793 kcal/mol (3428.4103 without restraints) Performing minimization step: 664. Total energy = 3426.0413 kcal/mol (3424.5743 without restraints) Performing minimization step: 665. Total energy = 3422.2115 kcal/mol (3420.7465 without restraints) Performing minimization step: 666. Total energy = 3418.3900 kcal/mol (3416.9270 without restraints) Performing minimization step: 667. Total energy = 3414.5766 kcal/mol (3413.1156 without restraints) Performing minimization step: 668. Total energy = 3410.7714 kcal/mol (3409.3124 without restraints) Performing minimization step: 669. Total energy = 3406.9741 kcal/mol (3405.5170 without restraints) Performing minimization step: 670. Total energy = 3403.1852 kcal/mol (3401.7301 without restraints) Performing minimization step: 671. Total energy = 3399.4043 kcal/mol (3397.9511 without restraints) Performing minimization step: 672. Total energy = 3395.6315 kcal/mol (3394.1803 without restraints) Performing minimization step: 673. Total energy = 3391.8667 kcal/mol (3390.4175 without restraints) Performing minimization step: 674. Total energy = 3388.1098 kcal/mol (3386.6625 without restraints) Performing minimization step: 675. Total energy = 3384.3611 kcal/mol (3382.9157 without restraints) Performing minimization step: 676. Total energy = 3380.6202 kcal/mol (3379.1768 without restraints) Performing minimization step: 677. Total energy = 3376.8874 kcal/mol (3375.4459 without restraints) Performing minimization step: 678. Total energy = 3373.1624 kcal/mol (3371.7228 without restraints) Performing minimization step: 679. Total energy = 3369.4453 kcal/mol (3368.0077 without restraints) Performing minimization step: 680. Total energy = 3365.7361 kcal/mol (3364.3004 without restraints) Performing minimization step: 681. Total energy = 3362.0349 kcal/mol (3360.6011 without restraints) Performing minimization step: 682. Total energy = 3358.3409 kcal/mol (3356.9090 without restraints) Performing minimization step: 683. Total energy = 3354.6551 kcal/mol (3353.2251 without restraints) Performing minimization step: 684. Total energy = 3350.9771 kcal/mol (3349.5489 without restraints) Performing minimization step: 685. Total energy = 3347.3067 kcal/mol (3345.8805 without restraints) Performing minimization step: 686. Total energy = 3343.6441 kcal/mol (3342.2198 without restraints) Performing minimization step: 687. Total energy = 3339.9895 kcal/mol (3338.5670 without restraints) Performing minimization step: 688. Total energy = 3336.3424 kcal/mol (3334.9218 without restraints) Performing minimization step: 689. Total energy = 3332.7028 kcal/mol (3331.2841 without restraints) Performing minimization step: 690. Total energy = 3329.0712 kcal/mol (3327.6544 without restraints) Performing minimization step: 691. Total energy = 3325.4468 kcal/mol (3324.0318 without restraints) Performing minimization step: 692. Total energy = 3321.8299 kcal/mol (3320.4168 without restraints) Performing minimization step: 693. Total energy = 3318.2203 kcal/mol (3316.8091 without restraints) Performing minimization step: 694. Total energy = 3314.6183 kcal/mol (3313.2089 without restraints) Performing minimization step: 695. Total energy = 3311.0239 kcal/mol (3309.6162 without restraints) Performing minimization step: 696. Total energy = 3307.4373 kcal/mol (3306.0316 without restraints) Performing minimization step: 697. Total energy = 3303.8579 kcal/mol (3302.4539 without restraints) Performing minimization step: 698. Total energy = 3300.2857 kcal/mol (3298.8835 without restraints) Performing minimization step: 699. Total energy = 3296.7213 kcal/mol (3295.3210 without restraints) Performing minimization step: 700. Total energy = 3293.1640 kcal/mol (3291.7656 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 701. Total energy = 3289.6142 kcal/mol (3288.2175 without restraints) Performing minimization step: 702. Total energy = 3286.0716 kcal/mol (3284.6767 without restraints) Performing minimization step: 703. Total energy = 3282.5363 kcal/mol (3281.1432 without restraints) Performing minimization step: 704. Total energy = 3279.0084 kcal/mol (3277.6171 without restraints) Performing minimization step: 705. Total energy = 3275.4877 kcal/mol (3274.0982 without restraints) Performing minimization step: 706. Total energy = 3271.9742 kcal/mol (3270.5865 without restraints) Performing minimization step: 707. Total energy = 3268.4680 kcal/mol (3267.0822 without restraints) Performing minimization step: 708. Total energy = 3264.9690 kcal/mol (3263.5849 without restraints) Performing minimization step: 709. Total energy = 3261.4769 kcal/mol (3260.0945 without restraints) Performing minimization step: 710. Total energy = 3257.9921 kcal/mol (3256.6115 without restraints) Performing minimization step: 711. Total energy = 3254.5145 kcal/mol (3253.1356 without restraints) Performing minimization step: 712. Total energy = 3251.0439 kcal/mol (3249.6668 without restraints) Performing minimization step: 713. Total energy = 3247.5804 kcal/mol (3246.2050 without restraints) Performing minimization step: 714. Total energy = 3244.1239 kcal/mol (3242.7503 without restraints) Performing minimization step: 715. Total energy = 3240.6747 kcal/mol (3239.3029 without restraints) Performing minimization step: 716. Total energy = 3237.2323 kcal/mol (3235.8622 without restraints) Performing minimization step: 717. Total energy = 3233.7968 kcal/mol (3232.4284 without restraints) Performing minimization step: 718. Total energy = 3230.3683 kcal/mol (3229.0017 without restraints) Performing minimization step: 719. Total energy = 3226.9466 kcal/mol (3225.5816 without restraints) Performing minimization step: 720. Total energy = 3223.5319 kcal/mol (3222.1687 without restraints) Performing minimization step: 721. Total energy = 3220.1242 kcal/mol (3218.7627 without restraints) Performing minimization step: 722. Total energy = 3216.7233 kcal/mol (3215.3635 without restraints) Performing minimization step: 723. Total energy = 3213.3294 kcal/mol (3211.9714 without restraints) Performing minimization step: 724. Total energy = 3209.9423 kcal/mol (3208.5860 without restraints) Performing minimization step: 725. Total energy = 3206.5622 kcal/mol (3205.2075 without restraints) Performing minimization step: 726. Total energy = 3203.1886 kcal/mol (3201.8356 without restraints) Performing minimization step: 727. Total energy = 3199.8217 kcal/mol (3198.4704 without restraints) Performing minimization step: 728. Total energy = 3196.4618 kcal/mol (3195.1122 without restraints) Performing minimization step: 729. Total energy = 3193.1084 kcal/mol (3191.7605 without restraints) Performing minimization step: 730. Total energy = 3189.7617 kcal/mol (3188.4155 without restraints) Performing minimization step: 731. Total energy = 3186.4217 kcal/mol (3185.0771 without restraints) Performing minimization step: 732. Total energy = 3183.0881 kcal/mol (3181.7452 without restraints) Performing minimization step: 733. Total energy = 3179.7614 kcal/mol (3178.4202 without restraints) Performing minimization step: 734. Total energy = 3176.4413 kcal/mol (3175.1017 without restraints) Performing minimization step: 735. Total energy = 3173.1277 kcal/mol (3171.7898 without restraints) Performing minimization step: 736. Total energy = 3169.8208 kcal/mol (3168.4845 without restraints) Performing minimization step: 737. Total energy = 3166.5204 kcal/mol (3165.1858 without restraints) Performing minimization step: 738. Total energy = 3163.2261 kcal/mol (3161.8930 without restraints) Performing minimization step: 739. Total energy = 3159.9386 kcal/mol (3158.6073 without restraints) Performing minimization step: 740. Total energy = 3156.6577 kcal/mol (3155.3280 without restraints) Performing minimization step: 741. Total energy = 3153.3833 kcal/mol (3152.0552 without restraints) Performing minimization step: 742. Total energy = 3150.1154 kcal/mol (3148.7889 without restraints) Performing minimization step: 743. Total energy = 3146.8539 kcal/mol (3145.5290 without restraints) Performing minimization step: 744. Total energy = 3143.5988 kcal/mol (3142.2755 without restraints) Performing minimization step: 745. Total energy = 3140.3500 kcal/mol (3139.0284 without restraints) Performing minimization step: 746. Total energy = 3137.1077 kcal/mol (3135.7876 without restraints) Performing minimization step: 747. Total energy = 3133.8720 kcal/mol (3132.5535 without restraints) Performing minimization step: 748. Total energy = 3130.6422 kcal/mol (3129.3254 without restraints) Performing minimization step: 749. Total energy = 3127.4188 kcal/mol (3126.1036 without restraints) Performing minimization step: 750. Total energy = 3124.2018 kcal/mol (3122.8881 without restraints) Performing minimization step: 751. Total energy = 3120.9912 kcal/mol (3119.6791 without restraints) Performing minimization step: 752. Total energy = 3117.7866 kcal/mol (3116.4761 without restraints) Performing minimization step: 753. Total energy = 3114.5882 kcal/mol (3113.2793 without restraints) Performing minimization step: 754. Total energy = 3111.3961 kcal/mol (3110.0888 without restraints) Performing minimization step: 755. Total energy = 3108.2102 kcal/mol (3106.9044 without restraints) Performing minimization step: 756. Total energy = 3105.0304 kcal/mol (3103.7262 without restraints) Performing minimization step: 757. Total energy = 3101.8566 kcal/mol (3100.5539 without restraints) Performing minimization step: 758. Total energy = 3098.6889 kcal/mol (3097.3878 without restraints) Performing minimization step: 759. Total energy = 3095.5273 kcal/mol (3094.2278 without restraints) Performing minimization step: 760. Total energy = 3092.3720 kcal/mol (3091.0740 without restraints) Performing minimization step: 761. Total energy = 3089.2228 kcal/mol (3087.9264 without restraints) Performing minimization step: 762. Total energy = 3086.0796 kcal/mol (3084.7847 without restraints) Performing minimization step: 763. Total energy = 3082.9425 kcal/mol (3081.6491 without restraints) Performing minimization step: 764. Total energy = 3079.8113 kcal/mol (3078.5195 without restraints) Performing minimization step: 765. Total energy = 3076.6864 kcal/mol (3075.3961 without restraints) Performing minimization step: 766. Total energy = 3073.5673 kcal/mol (3072.2785 without restraints) Performing minimization step: 767. Total energy = 3070.4541 kcal/mol (3069.1669 without restraints) Performing minimization step: 768. Total energy = 3067.3467 kcal/mol (3066.0609 without restraints) Performing minimization step: 769. Total energy = 3064.2454 kcal/mol (3062.9612 without restraints) Performing minimization step: 770. Total energy = 3061.1499 kcal/mol (3059.8672 without restraints) Performing minimization step: 771. Total energy = 3058.0604 kcal/mol (3056.7792 without restraints) Performing minimization step: 772. Total energy = 3054.9768 kcal/mol (3053.6971 without restraints) Performing minimization step: 773. Total energy = 3051.8990 kcal/mol (3050.6208 without restraints) Performing minimization step: 774. Total energy = 3048.8270 kcal/mol (3047.5503 without restraints) Performing minimization step: 775. Total energy = 3045.7609 kcal/mol (3044.4856 without restraints) Performing minimization step: 776. Total energy = 3042.7005 kcal/mol (3041.4268 without restraints) Performing minimization step: 777. Total energy = 3039.6460 kcal/mol (3038.3737 without restraints) Performing minimization step: 778. Total energy = 3036.5972 kcal/mol (3035.3264 without restraints) Performing minimization step: 779. Total energy = 3033.5544 kcal/mol (3032.2853 without restraints) Performing minimization step: 780. Total energy = 3030.5172 kcal/mol (3029.2494 without restraints) Performing minimization step: 781. Total energy = 3027.4856 kcal/mol (3026.2193 without restraints) Performing minimization step: 782. Total energy = 3024.4596 kcal/mol (3023.1947 without restraints) Performing minimization step: 783. Total energy = 3021.4394 kcal/mol (3020.1760 without restraints) Performing minimization step: 784. Total energy = 3018.4248 kcal/mol (3017.1628 without restraints) Performing minimization step: 785. Total energy = 3015.4158 kcal/mol (3014.1553 without restraints) Performing minimization step: 786. Total energy = 3012.4127 kcal/mol (3011.1537 without restraints) Performing minimization step: 787. Total energy = 3009.4150 kcal/mol (3008.1574 without restraints) Performing minimization step: 788. Total energy = 3006.4231 kcal/mol (3005.1669 without restraints) Performing minimization step: 789. Total energy = 3003.4365 kcal/mol (3002.1818 without restraints) Performing minimization step: 790. Total energy = 3000.4555 kcal/mol (2999.2022 without restraints) Performing minimization step: 791. Total energy = 2997.4799 kcal/mol (2996.2281 without restraints) Performing minimization step: 792. Total energy = 2994.5100 kcal/mol (2993.2596 without restraints) Performing minimization step: 793. Total energy = 2991.5456 kcal/mol (2990.2966 without restraints) Performing minimization step: 794. Total energy = 2988.5866 kcal/mol (2987.3390 without restraints) Performing minimization step: 795. Total energy = 2985.6331 kcal/mol (2984.3870 without restraints) Performing minimization step: 796. Total energy = 2982.6850 kcal/mol (2981.4402 without restraints) Performing minimization step: 797. Total energy = 2979.7424 kcal/mol (2978.4991 without restraints) Performing minimization step: 798. Total energy = 2976.8052 kcal/mol (2975.5632 without restraints) Performing minimization step: 799. Total energy = 2973.8734 kcal/mol (2972.6329 without restraints) Performing minimization step: 800. Total energy = 2970.9470 kcal/mol (2969.7079 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 801. Total energy = 2968.0260 kcal/mol (2966.7883 without restraints) Performing minimization step: 802. Total energy = 2965.1104 kcal/mol (2963.8741 without restraints) Performing minimization step: 803. Total energy = 2962.2000 kcal/mol (2960.9651 without restraints) Performing minimization step: 804. Total energy = 2959.2951 kcal/mol (2958.0615 without restraints) Performing minimization step: 805. Total energy = 2956.3955 kcal/mol (2955.1634 without restraints) Performing minimization step: 806. Total energy = 2953.5012 kcal/mol (2952.2704 without restraints) Performing minimization step: 807. Total energy = 2950.6121 kcal/mol (2949.3827 without restraints) Performing minimization step: 808. Total energy = 2947.7285 kcal/mol (2946.5006 without restraints) Performing minimization step: 809. Total energy = 2944.8500 kcal/mol (2943.6234 without restraints) Performing minimization step: 810. Total energy = 2941.9767 kcal/mol (2940.7514 without restraints) Performing minimization step: 811. Total energy = 2939.1086 kcal/mol (2937.8846 without restraints) Performing minimization step: 812. Total energy = 2936.2456 kcal/mol (2935.0230 without restraints) Performing minimization step: 813. Total energy = 2933.3879 kcal/mol (2932.1668 without restraints) Performing minimization step: 814. Total energy = 2930.5354 kcal/mol (2929.3156 without restraints) Performing minimization step: 815. Total energy = 2927.6880 kcal/mol (2926.4695 without restraints) Performing minimization step: 816. Total energy = 2924.8456 kcal/mol (2923.6285 without restraints) Performing minimization step: 817. Total energy = 2922.0085 kcal/mol (2920.7927 without restraints) Performing minimization step: 818. Total energy = 2919.1765 kcal/mol (2917.9620 without restraints) Performing minimization step: 819. Total energy = 2916.3497 kcal/mol (2915.1366 without restraints) Performing minimization step: 820. Total energy = 2913.5276 kcal/mol (2912.3158 without restraints) Performing minimization step: 821. Total energy = 2910.7107 kcal/mol (2909.5003 without restraints) Performing minimization step: 822. Total energy = 2907.8987 kcal/mol (2906.6896 without restraints) Performing minimization step: 823. Total energy = 2905.0920 kcal/mol (2903.8842 without restraints) Performing minimization step: 824. Total energy = 2902.2901 kcal/mol (2901.0836 without restraints) Performing minimization step: 825. Total energy = 2899.4934 kcal/mol (2898.2882 without restraints) Performing minimization step: 826. Total energy = 2896.7016 kcal/mol (2895.4978 without restraints) Performing minimization step: 827. Total energy = 2893.9149 kcal/mol (2892.7124 without restraints) Performing minimization step: 828. Total energy = 2891.1331 kcal/mol (2889.9320 without restraints) Performing minimization step: 829. Total energy = 2888.3563 kcal/mol (2887.1565 without restraints) Performing minimization step: 830. Total energy = 2885.5844 kcal/mol (2884.3859 without restraints) Performing minimization step: 831. Total energy = 2882.8176 kcal/mol (2881.6204 without restraints) Performing minimization step: 832. Total energy = 2880.0556 kcal/mol (2878.8596 without restraints) Performing minimization step: 833. Total energy = 2877.2984 kcal/mol (2876.1038 without restraints) Performing minimization step: 834. Total energy = 2874.5461 kcal/mol (2873.3527 without restraints) Performing minimization step: 835. Total energy = 2871.7987 kcal/mol (2870.6066 without restraints) Performing minimization step: 836. Total energy = 2869.0561 kcal/mol (2867.8653 without restraints) Performing minimization step: 837. Total energy = 2866.3185 kcal/mol (2865.1290 without restraints) Performing minimization step: 838. Total energy = 2863.5856 kcal/mol (2862.3974 without restraints) Performing minimization step: 839. Total energy = 2860.8575 kcal/mol (2859.6705 without restraints) Performing minimization step: 840. Total energy = 2858.1341 kcal/mol (2856.9485 without restraints) Performing minimization step: 841. Total energy = 2855.4156 kcal/mol (2854.2312 without restraints) Performing minimization step: 842. Total energy = 2852.7018 kcal/mol (2851.5187 without restraints) Performing minimization step: 843. Total energy = 2849.9928 kcal/mol (2848.8110 without restraints) Performing minimization step: 844. Total energy = 2847.2885 kcal/mol (2846.1079 without restraints) Performing minimization step: 845. Total energy = 2844.5890 kcal/mol (2843.4097 without restraints) Performing minimization step: 846. Total energy = 2841.8941 kcal/mol (2840.7161 without restraints) Performing minimization step: 847. Total energy = 2839.2040 kcal/mol (2838.0272 without restraints) Performing minimization step: 848. Total energy = 2836.5185 kcal/mol (2835.3430 without restraints) Performing minimization step: 849. Total energy = 2833.8377 kcal/mol (2832.6635 without restraints) Performing minimization step: 850. Total energy = 2831.1621 kcal/mol (2829.9890 without restraints) Performing minimization step: 851. Total energy = 2828.4906 kcal/mol (2827.3188 without restraints) Performing minimization step: 852. Total energy = 2825.8238 kcal/mol (2824.6532 without restraints) Performing minimization step: 853. Total energy = 2823.1618 kcal/mol (2821.9925 without restraints) Performing minimization step: 854. Total energy = 2820.5038 kcal/mol (2819.3359 without restraints) Performing minimization step: 855. Total energy = 2817.8510 kcal/mol (2816.6842 without restraints) Performing minimization step: 856. Total energy = 2815.2026 kcal/mol (2814.0370 without restraints) Performing minimization step: 857. Total energy = 2812.5588 kcal/mol (2811.3944 without restraints) Performing minimization step: 858. Total energy = 2809.9193 kcal/mol (2808.7562 without restraints) Performing minimization step: 859. Total energy = 2807.2845 kcal/mol (2806.1227 without restraints) Performing minimization step: 860. Total energy = 2804.6543 kcal/mol (2803.4937 without restraints) Performing minimization step: 861. Total energy = 2802.0285 kcal/mol (2800.8690 without restraints) Performing minimization step: 862. Total energy = 2799.4073 kcal/mol (2798.2491 without restraints) Performing minimization step: 863. Total energy = 2796.7906 kcal/mol (2795.6337 without restraints) Performing minimization step: 864. Total energy = 2794.1785 kcal/mol (2793.0227 without restraints) Performing minimization step: 865. Total energy = 2791.5708 kcal/mol (2790.4162 without restraints) Performing minimization step: 866. Total energy = 2788.9675 kcal/mol (2787.8142 without restraints) Performing minimization step: 867. Total energy = 2786.3687 kcal/mol (2785.2166 without restraints) Performing minimization step: 868. Total energy = 2783.7744 kcal/mol (2782.6234 without restraints) Performing minimization step: 869. Total energy = 2781.1844 kcal/mol (2780.0347 without restraints) Performing minimization step: 870. Total energy = 2778.5989 kcal/mol (2777.4504 without restraints) Performing minimization step: 871. Total energy = 2776.0180 kcal/mol (2774.8706 without restraints) Performing minimization step: 872. Total energy = 2773.4409 kcal/mol (2772.2947 without restraints) Performing minimization step: 873. Total energy = 2770.8685 kcal/mol (2769.7236 without restraints) Performing minimization step: 874. Total energy = 2768.3005 kcal/mol (2767.1568 without restraints) Performing minimization step: 875. Total energy = 2765.7369 kcal/mol (2764.5943 without restraints) Performing minimization step: 876. Total energy = 2763.1776 kcal/mol (2762.0362 without restraints) Performing minimization step: 877. Total energy = 2760.6229 kcal/mol (2759.4827 without restraints) Performing minimization step: 878. Total energy = 2758.0722 kcal/mol (2756.9332 without restraints) Performing minimization step: 879. Total energy = 2755.5259 kcal/mol (2754.3880 without restraints) Performing minimization step: 880. Total energy = 2752.9839 kcal/mol (2751.8472 without restraints) Performing minimization step: 881. Total energy = 2750.4461 kcal/mol (2749.3106 without restraints) Performing minimization step: 882. Total energy = 2747.9126 kcal/mol (2746.7783 without restraints) Performing minimization step: 883. Total energy = 2745.3834 kcal/mol (2744.2503 without restraints) Performing minimization step: 884. Total energy = 2742.8584 kcal/mol (2741.7265 without restraints) Performing minimization step: 885. Total energy = 2740.3377 kcal/mol (2739.2069 without restraints) Performing minimization step: 886. Total energy = 2737.8212 kcal/mol (2736.6916 without restraints) Performing minimization step: 887. Total energy = 2735.3089 kcal/mol (2734.1804 without restraints) Performing minimization step: 888. Total energy = 2732.8009 kcal/mol (2731.6736 without restraints) Performing minimization step: 889. Total energy = 2730.2970 kcal/mol (2729.1708 without restraints) Performing minimization step: 890. Total energy = 2727.7973 kcal/mol (2726.6723 without restraints) Performing minimization step: 891. Total energy = 2725.3018 kcal/mol (2724.1779 without restraints) Performing minimization step: 892. Total energy = 2722.8105 kcal/mol (2721.6877 without restraints) Performing minimization step: 893. Total energy = 2720.3233 kcal/mol (2719.2017 without restraints) Performing minimization step: 894. Total energy = 2717.8400 kcal/mol (2716.7196 without restraints) Performing minimization step: 895. Total energy = 2715.3611 kcal/mol (2714.2418 without restraints) Performing minimization step: 896. Total energy = 2712.8863 kcal/mol (2711.7681 without restraints) Performing minimization step: 897. Total energy = 2710.4156 kcal/mol (2709.2986 without restraints) Performing minimization step: 898. Total energy = 2707.9492 kcal/mol (2706.8333 without restraints) Performing minimization step: 899. Total energy = 2705.4865 kcal/mol (2704.3718 without restraints) Performing minimization step: 900. Total energy = 2703.0279 kcal/mol (2701.9143 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 901. Total energy = 2700.5735 kcal/mol (2699.4610 without restraints) Performing minimization step: 902. Total energy = 2698.1232 kcal/mol (2697.0119 without restraints) Performing minimization step: 903. Total energy = 2695.6769 kcal/mol (2694.5667 without restraints) Performing minimization step: 904. Total energy = 2693.2347 kcal/mol (2692.1256 without restraints) Performing minimization step: 905. Total energy = 2690.7965 kcal/mol (2689.6885 without restraints) Performing minimization step: 906. Total energy = 2688.3620 kcal/mol (2687.2551 without restraints) Performing minimization step: 907. Total energy = 2685.9323 kcal/mol (2684.8265 without restraints) Performing minimization step: 908. Total energy = 2683.5060 kcal/mol (2682.4014 without restraints) Performing minimization step: 909. Total energy = 2681.0839 kcal/mol (2679.9803 without restraints) Performing minimization step: 910. Total energy = 2678.6657 kcal/mol (2677.5634 without restraints) Performing minimization step: 911. Total energy = 2676.2516 kcal/mol (2675.1503 without restraints) Performing minimization step: 912. Total energy = 2673.8413 kcal/mol (2672.7411 without restraints) Performing minimization step: 913. Total energy = 2671.4349 kcal/mol (2670.3359 without restraints) Performing minimization step: 914. Total energy = 2669.0326 kcal/mol (2667.9346 without restraints) Performing minimization step: 915. Total energy = 2666.6341 kcal/mol (2665.5372 without restraints) Performing minimization step: 916. Total energy = 2664.2395 kcal/mol (2663.1437 without restraints) Performing minimization step: 917. Total energy = 2661.8488 kcal/mol (2660.7542 without restraints) Performing minimization step: 918. Total energy = 2659.4621 kcal/mol (2658.3685 without restraints) Performing minimization step: 919. Total energy = 2657.0792 kcal/mol (2655.9867 without restraints) Performing minimization step: 920. Total energy = 2654.7000 kcal/mol (2653.6086 without restraints) Performing minimization step: 921. Total energy = 2652.3246 kcal/mol (2651.2343 without restraints) Performing minimization step: 922. Total energy = 2649.9533 kcal/mol (2648.8641 without restraints) Performing minimization step: 923. Total energy = 2647.5859 kcal/mol (2646.4978 without restraints) Performing minimization step: 924. Total energy = 2645.2223 kcal/mol (2644.1352 without restraints) Performing minimization step: 925. Total energy = 2642.8625 kcal/mol (2641.7766 without restraints) Performing minimization step: 926. Total energy = 2640.5066 kcal/mol (2639.4218 without restraints) Performing minimization step: 927. Total energy = 2638.1545 kcal/mol (2637.0707 without restraints) Performing minimization step: 928. Total energy = 2635.8061 kcal/mol (2634.7233 without restraints) Performing minimization step: 929. Total energy = 2633.4615 kcal/mol (2632.3799 without restraints) Performing minimization step: 930. Total energy = 2631.1204 kcal/mol (2630.0398 without restraints) Performing minimization step: 931. Total energy = 2628.7834 kcal/mol (2627.7039 without restraints) Performing minimization step: 932. Total energy = 2626.4502 kcal/mol (2625.3718 without restraints) Performing minimization step: 933. Total energy = 2624.1208 kcal/mol (2623.0434 without restraints) Performing minimization step: 934. Total energy = 2621.7950 kcal/mol (2620.7187 without restraints) Performing minimization step: 935. Total energy = 2619.4730 kcal/mol (2618.3978 without restraints) Performing minimization step: 936. Total energy = 2617.1549 kcal/mol (2616.0808 without restraints) Performing minimization step: 937. Total energy = 2614.8405 kcal/mol (2613.7674 without restraints) Performing minimization step: 938. Total energy = 2612.5298 kcal/mol (2611.4578 without restraints) Performing minimization step: 939. Total energy = 2610.2228 kcal/mol (2609.1518 without restraints) Performing minimization step: 940. Total energy = 2607.9194 kcal/mol (2606.8495 without restraints) Performing minimization step: 941. Total energy = 2605.6197 kcal/mol (2604.5508 without restraints) Performing minimization step: 942. Total energy = 2603.3239 kcal/mol (2602.2560 without restraints) Performing minimization step: 943. Total energy = 2601.0313 kcal/mol (2599.9645 without restraints) Performing minimization step: 944. Total energy = 2598.7426 kcal/mol (2597.6768 without restraints) Performing minimization step: 945. Total energy = 2596.4575 kcal/mol (2595.3928 without restraints) Performing minimization step: 946. Total energy = 2594.1759 kcal/mol (2593.1122 without restraints) Performing minimization step: 947. Total energy = 2591.8981 kcal/mol (2590.8355 without restraints) Performing minimization step: 948. Total energy = 2589.6239 kcal/mol (2588.5623 without restraints) Performing minimization step: 949. Total energy = 2587.3533 kcal/mol (2586.2928 without restraints) Performing minimization step: 950. Total energy = 2585.0866 kcal/mol (2584.0271 without restraints) Performing minimization step: 951. Total energy = 2582.8233 kcal/mol (2581.7649 without restraints) Performing minimization step: 952. Total energy = 2580.5637 kcal/mol (2579.5063 without restraints) Performing minimization step: 953. Total energy = 2578.3078 kcal/mol (2577.2514 without restraints) Performing minimization step: 954. Total energy = 2576.0552 kcal/mol (2574.9999 without restraints) Performing minimization step: 955. Total energy = 2573.8062 kcal/mol (2572.7519 without restraints) Performing minimization step: 956. Total energy = 2571.5605 kcal/mol (2570.5072 without restraints) Performing minimization step: 957. Total energy = 2569.3186 kcal/mol (2568.2663 without restraints) Performing minimization step: 958. Total energy = 2567.0802 kcal/mol (2566.0290 without restraints) Performing minimization step: 959. Total energy = 2564.8454 kcal/mol (2563.7952 without restraints) Performing minimization step: 960. Total energy = 2562.6139 kcal/mol (2561.5647 without restraints) Performing minimization step: 961. Total energy = 2560.3863 kcal/mol (2559.3381 without restraints) Performing minimization step: 962. Total energy = 2558.1620 kcal/mol (2557.1149 without restraints) Performing minimization step: 963. Total energy = 2555.9412 kcal/mol (2554.8951 without restraints) Performing minimization step: 964. Total energy = 2553.7239 kcal/mol (2552.6788 without restraints) Performing minimization step: 965. Total energy = 2551.5101 kcal/mol (2550.4660 without restraints) Performing minimization step: 966. Total energy = 2549.2998 kcal/mol (2548.2567 without restraints) Performing minimization step: 967. Total energy = 2547.0930 kcal/mol (2546.0509 without restraints) Performing minimization step: 968. Total energy = 2544.8894 kcal/mol (2543.8483 without restraints) Performing minimization step: 969. Total energy = 2542.6895 kcal/mol (2541.6494 without restraints) Performing minimization step: 970. Total energy = 2540.4930 kcal/mol (2539.4539 without restraints) Performing minimization step: 971. Total energy = 2538.2999 kcal/mol (2537.2619 without restraints) Performing minimization step: 972. Total energy = 2536.1105 kcal/mol (2535.0735 without restraints) Performing minimization step: 973. Total energy = 2533.9243 kcal/mol (2532.8883 without restraints) Performing minimization step: 974. Total energy = 2531.7415 kcal/mol (2530.7065 without restraints) Performing minimization step: 975. Total energy = 2529.5624 kcal/mol (2528.5284 without restraints) Performing minimization step: 976. Total energy = 2527.3864 kcal/mol (2526.3534 without restraints) Performing minimization step: 977. Total energy = 2525.2139 kcal/mol (2524.1818 without restraints) Performing minimization step: 978. Total energy = 2523.0447 kcal/mol (2522.0137 without restraints) Performing minimization step: 979. Total energy = 2520.8789 kcal/mol (2519.8488 without restraints) Performing minimization step: 980. Total energy = 2518.7164 kcal/mol (2517.6874 without restraints) Performing minimization step: 981. Total energy = 2516.5574 kcal/mol (2515.5293 without restraints) Performing minimization step: 982. Total energy = 2514.4016 kcal/mol (2513.3746 without restraints) Performing minimization step: 983. Total energy = 2512.2492 kcal/mol (2511.2232 without restraints) Performing minimization step: 984. Total energy = 2510.1002 kcal/mol (2509.0751 without restraints) Performing minimization step: 985. Total energy = 2507.9547 kcal/mol (2506.9306 without restraints) Performing minimization step: 986. Total energy = 2505.8123 kcal/mol (2504.7892 without restraints) Performing minimization step: 987. Total energy = 2503.6733 kcal/mol (2502.6512 without restraints) Performing minimization step: 988. Total energy = 2501.5376 kcal/mol (2500.5164 without restraints) Performing minimization step: 989. Total energy = 2499.4051 kcal/mol (2498.3850 without restraints) Performing minimization step: 990. Total energy = 2497.2760 kcal/mol (2496.2568 without restraints) Performing minimization step: 991. Total energy = 2495.1502 kcal/mol (2494.1320 without restraints) Performing minimization step: 992. Total energy = 2493.0276 kcal/mol (2492.0104 without restraints) Performing minimization step: 993. Total energy = 2490.9081 kcal/mol (2489.8919 without restraints) Performing minimization step: 994. Total energy = 2488.7918 kcal/mol (2487.7765 without restraints) Performing minimization step: 995. Total energy = 2486.6791 kcal/mol (2485.6648 without restraints) Performing minimization step: 996. Total energy = 2484.5696 kcal/mol (2483.5563 without restraints) Performing minimization step: 997. Total energy = 2482.4634 kcal/mol (2481.4510 without restraints) Performing minimization step: 998. Total energy = 2480.3604 kcal/mol (2479.3490 without restraints) Performing minimization step: 999. Total energy = 2478.2607 kcal/mol (2477.2502 without restraints) Performing minimization step: 1000. Total energy = 2476.1642 kcal/mol (2475.1547 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 2474.0706 kcal/mol (2473.0621 without restraints) Performing minimization step: 1002. Total energy = 2471.9806 kcal/mol (2470.9730 without restraints) Performing minimization step: 1003. Total energy = 2469.8937 kcal/mol (2468.8871 without restraints) Performing minimization step: 1004. Total energy = 2467.8100 kcal/mol (2466.8044 without restraints) Performing minimization step: 1005. Total energy = 2465.7296 kcal/mol (2464.7249 without restraints) Performing minimization step: 1006. Total energy = 2463.6523 kcal/mol (2462.6485 without restraints) Performing minimization step: 1007. Total energy = 2461.5781 kcal/mol (2460.5754 without restraints) Performing minimization step: 1008. Total energy = 2459.5074 kcal/mol (2458.5056 without restraints) Performing minimization step: 1009. Total energy = 2457.4396 kcal/mol (2456.4388 without restraints) Performing minimization step: 1010. Total energy = 2455.3751 kcal/mol (2454.3752 without restraints) Performing minimization step: 1011. Total energy = 2453.3138 kcal/mol (2452.3151 without restraints) Performing minimization step: 1012. Total energy = 2451.2557 kcal/mol (2450.2577 without restraints) Performing minimization step: 1013. Total energy = 2449.2005 kcal/mol (2448.2035 without restraints) Performing minimization step: 1014. Total energy = 2447.1485 kcal/mol (2446.1524 without restraints) Performing minimization step: 1015. Total energy = 2445.0996 kcal/mol (2444.1045 without restraints) Performing minimization step: 1016. Total energy = 2443.0539 kcal/mol (2442.0597 without restraints) Performing minimization step: 1017. Total energy = 2441.0114 kcal/mol (2440.0182 without restraints) Performing minimization step: 1018. Total energy = 2438.9717 kcal/mol (2437.9794 without restraints) Performing minimization step: 1019. Total energy = 2436.9353 kcal/mol (2435.9439 without restraints) Performing minimization step: 1020. Total energy = 2434.9019 kcal/mol (2433.9115 without restraints) Performing minimization step: 1021. Total energy = 2432.8717 kcal/mol (2431.8822 without restraints) Performing minimization step: 1022. Total energy = 2430.8445 kcal/mol (2429.8560 without restraints) Performing minimization step: 1023. Total energy = 2428.8205 kcal/mol (2427.8329 without restraints) Performing minimization step: 1024. Total energy = 2426.7995 kcal/mol (2425.8128 without restraints) Performing minimization step: 1025. Total energy = 2424.7815 kcal/mol (2423.7958 without restraints) Performing minimization step: 1026. Total energy = 2422.7668 kcal/mol (2421.7820 without restraints) Performing minimization step: 1027. Total energy = 2420.7550 kcal/mol (2419.7712 without restraints) Performing minimization step: 1028. Total energy = 2418.7462 kcal/mol (2417.7633 without restraints) Performing minimization step: 1029. Total energy = 2416.7405 kcal/mol (2415.7584 without restraints) Performing minimization step: 1030. Total energy = 2414.7380 kcal/mol (2413.7569 without restraints) Performing minimization step: 1031. Total energy = 2412.7384 kcal/mol (2411.7584 without restraints) Performing minimization step: 1032. Total energy = 2410.7419 kcal/mol (2409.7627 without restraints) Performing minimization step: 1033. Total energy = 2408.7484 kcal/mol (2407.7701 without restraints) Performing minimization step: 1034. Total energy = 2406.7580 kcal/mol (2405.7806 without restraints) Performing minimization step: 1035. Total energy = 2404.7703 kcal/mol (2403.7939 without restraints) Performing minimization step: 1036. Total energy = 2402.7857 kcal/mol (2401.8102 without restraints) Performing minimization step: 1037. Total energy = 2400.8043 kcal/mol (2399.8297 without restraints) Performing minimization step: 1038. Total energy = 2398.8257 kcal/mol (2397.8520 without restraints) Performing minimization step: 1039. Total energy = 2396.8501 kcal/mol (2395.8773 without restraints) Performing minimization step: 1040. Total energy = 2394.8773 kcal/mol (2393.9054 without restraints) Performing minimization step: 1041. Total energy = 2392.9076 kcal/mol (2391.9367 without restraints) Performing minimization step: 1042. Total energy = 2390.9409 kcal/mol (2389.9709 without restraints) Performing minimization step: 1043. Total energy = 2388.9771 kcal/mol (2388.0081 without restraints) Performing minimization step: 1044. Total energy = 2387.0164 kcal/mol (2386.0482 without restraints) Performing minimization step: 1045. Total energy = 2385.0585 kcal/mol (2384.0912 without restraints) Performing minimization step: 1046. Total energy = 2383.1036 kcal/mol (2382.1373 without restraints) Performing minimization step: 1047. Total energy = 2381.1517 kcal/mol (2380.1862 without restraints) Performing minimization step: 1048. Total energy = 2379.2028 kcal/mol (2378.2383 without restraints) Performing minimization step: 1049. Total energy = 2377.2569 kcal/mol (2376.2933 without restraints) Performing minimization step: 1050. Total energy = 2375.3138 kcal/mol (2374.3510 without restraints) Performing minimization step: 1051. Total energy = 2373.3733 kcal/mol (2372.4115 without restraints) Performing minimization step: 1052. Total energy = 2371.4359 kcal/mol (2370.4750 without restraints) Performing minimization step: 1053. Total energy = 2369.5015 kcal/mol (2368.5415 without restraints) Performing minimization step: 1054. Total energy = 2367.5699 kcal/mol (2366.6109 without restraints) Performing minimization step: 1055. Total energy = 2365.6413 kcal/mol (2364.6831 without restraints) Performing minimization step: 1056. Total energy = 2363.7155 kcal/mol (2362.7582 without restraints) Performing minimization step: 1057. Total energy = 2361.7927 kcal/mol (2360.8363 without restraints) Performing minimization step: 1058. Total energy = 2359.8727 kcal/mol (2358.9172 without restraints) Performing minimization step: 1059. Total energy = 2357.9556 kcal/mol (2357.0010 without restraints) Performing minimization step: 1060. Total energy = 2356.0413 kcal/mol (2355.0876 without restraints) Performing minimization step: 1061. Total energy = 2354.1299 kcal/mol (2353.1771 without restraints) Performing minimization step: 1062. Total energy = 2352.2213 kcal/mol (2351.2694 without restraints) Performing minimization step: 1063. Total energy = 2350.3156 kcal/mol (2349.3646 without restraints) Performing minimization step: 1064. Total energy = 2348.4129 kcal/mol (2347.4628 without restraints) Performing minimization step: 1065. Total energy = 2346.5129 kcal/mol (2345.5637 without restraints) Performing minimization step: 1066. Total energy = 2344.6157 kcal/mol (2343.6674 without restraints) Performing minimization step: 1067. Total energy = 2342.7214 kcal/mol (2341.7740 without restraints) Performing minimization step: 1068. Total energy = 2340.8299 kcal/mol (2339.8833 without restraints) Performing minimization step: 1069. Total energy = 2338.9411 kcal/mol (2337.9955 without restraints) Performing minimization step: 1070. Total energy = 2337.0553 kcal/mol (2336.1105 without restraints) Performing minimization step: 1071. Total energy = 2335.1724 kcal/mol (2334.2285 without restraints) Performing minimization step: 1072. Total energy = 2333.2922 kcal/mol (2332.3494 without restraints) Performing minimization step: 1073. Total energy = 2331.4149 kcal/mol (2330.4728 without restraints) Performing minimization step: 1074. Total energy = 2329.5402 kcal/mol (2328.5990 without restraints) Performing minimization step: 1075. Total energy = 2327.6682 kcal/mol (2326.7279 without restraints) Performing minimization step: 1076. Total energy = 2325.7991 kcal/mol (2324.8597 without restraints) Performing minimization step: 1077. Total energy = 2323.9328 kcal/mol (2322.9942 without restraints) Performing minimization step: 1078. Total energy = 2322.0693 kcal/mol (2321.1316 without restraints) Performing minimization step: 1079. Total energy = 2320.2084 kcal/mol (2319.2716 without restraints) Performing minimization step: 1080. Total energy = 2318.3504 kcal/mol (2317.4145 without restraints) Performing minimization step: 1081. Total energy = 2316.4951 kcal/mol (2315.5601 without restraints) Performing minimization step: 1082. Total energy = 2314.6426 kcal/mol (2313.7084 without restraints) Performing minimization step: 1083. Total energy = 2312.7928 kcal/mol (2311.8595 without restraints) Performing minimization step: 1084. Total energy = 2310.9458 kcal/mol (2310.0134 without restraints) Performing minimization step: 1085. Total energy = 2309.1015 kcal/mol (2308.1700 without restraints) Performing minimization step: 1086. Total energy = 2307.2598 kcal/mol (2306.3291 without restraints) Performing minimization step: 1087. Total energy = 2305.4209 kcal/mol (2304.4912 without restraints) Performing minimization step: 1088. Total energy = 2303.5848 kcal/mol (2302.6559 without restraints) Performing minimization step: 1089. Total energy = 2301.7515 kcal/mol (2300.8234 without restraints) Performing minimization step: 1090. Total energy = 2299.9208 kcal/mol (2298.9936 without restraints) Performing minimization step: 1091. Total energy = 2298.0926 kcal/mol (2297.1663 without restraints) Performing minimization step: 1092. Total energy = 2296.2673 kcal/mol (2295.3419 without restraints) Performing minimization step: 1093. Total energy = 2294.4448 kcal/mol (2293.5203 without restraints) Performing minimization step: 1094. Total energy = 2292.6250 kcal/mol (2291.7013 without restraints) Performing minimization step: 1095. Total energy = 2290.8078 kcal/mol (2289.8850 without restraints) Performing minimization step: 1096. Total energy = 2288.9933 kcal/mol (2288.0714 without restraints) Performing minimization step: 1097. Total energy = 2287.1817 kcal/mol (2286.2607 without restraints) Performing minimization step: 1098. Total energy = 2285.3728 kcal/mol (2284.4526 without restraints) Performing minimization step: 1099. Total energy = 2283.5664 kcal/mol (2282.6471 without restraints) Performing minimization step: 1100. Total energy = 2281.7627 kcal/mol (2280.8442 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 2279.9618 kcal/mol (2279.0441 without restraints) Performing minimization step: 1102. Total energy = 2278.1634 kcal/mol (2277.2466 without restraints) Performing minimization step: 1103. Total energy = 2276.3676 kcal/mol (2275.4517 without restraints) Performing minimization step: 1104. Total energy = 2274.5744 kcal/mol (2273.6594 without restraints) Performing minimization step: 1105. Total energy = 2272.7840 kcal/mol (2271.8697 without restraints) Performing minimization step: 1106. Total energy = 2270.9961 kcal/mol (2270.0827 without restraints) Performing minimization step: 1107. Total energy = 2269.2109 kcal/mol (2268.2984 without restraints) Performing minimization step: 1108. Total energy = 2267.4283 kcal/mol (2266.5167 without restraints) Performing minimization step: 1109. Total energy = 2265.6484 kcal/mol (2264.7376 without restraints) Performing minimization step: 1110. Total energy = 2263.8710 kcal/mol (2262.9611 without restraints) Performing minimization step: 1111. Total energy = 2262.0963 kcal/mol (2261.1873 without restraints) Performing minimization step: 1112. Total energy = 2260.3244 kcal/mol (2259.4162 without restraints) Performing minimization step: 1113. Total energy = 2258.5550 kcal/mol (2257.6476 without restraints) Performing minimization step: 1114. Total energy = 2256.7881 kcal/mol (2255.8816 without restraints) Performing minimization step: 1115. Total energy = 2255.0239 kcal/mol (2254.1182 without restraints) Performing minimization step: 1116. Total energy = 2253.2622 kcal/mol (2252.3574 without restraints) Performing minimization step: 1117. Total energy = 2251.5032 kcal/mol (2250.5992 without restraints) Performing minimization step: 1118. Total energy = 2249.7467 kcal/mol (2248.8436 without restraints) Performing minimization step: 1119. Total energy = 2247.9929 kcal/mol (2247.0906 without restraints) Performing minimization step: 1120. Total energy = 2246.2416 kcal/mol (2245.3402 without restraints) Performing minimization step: 1121. Total energy = 2244.4929 kcal/mol (2243.5923 without restraints) Performing minimization step: 1122. Total energy = 2242.7467 kcal/mol (2241.8470 without restraints) Performing minimization step: 1123. Total energy = 2241.0034 kcal/mol (2240.1045 without restraints) Performing minimization step: 1124. Total energy = 2239.2624 kcal/mol (2238.3643 without restraints) Performing minimization step: 1125. Total energy = 2237.5239 kcal/mol (2236.6267 without restraints) Performing minimization step: 1126. Total energy = 2235.7880 kcal/mol (2234.8916 without restraints) Performing minimization step: 1127. Total energy = 2234.0546 kcal/mol (2233.1591 without restraints) Performing minimization step: 1128. Total energy = 2232.3238 kcal/mol (2231.4292 without restraints) Performing minimization step: 1129. Total energy = 2230.5956 kcal/mol (2229.7017 without restraints) Performing minimization step: 1130. Total energy = 2228.8698 kcal/mol (2227.9768 without restraints) Performing minimization step: 1131. Total energy = 2227.1466 kcal/mol (2226.2545 without restraints) Performing minimization step: 1132. Total energy = 2225.4258 kcal/mol (2224.5345 without restraints) Performing minimization step: 1133. Total energy = 2223.7076 kcal/mol (2222.8172 without restraints) Performing minimization step: 1134. Total energy = 2221.9923 kcal/mol (2221.1027 without restraints) Performing minimization step: 1135. Total energy = 2220.2792 kcal/mol (2219.3904 without restraints) Performing minimization step: 1136. Total energy = 2218.5683 kcal/mol (2217.6803 without restraints) Performing minimization step: 1137. Total energy = 2216.8602 kcal/mol (2215.9731 without restraints) Performing minimization step: 1138. Total energy = 2215.1547 kcal/mol (2214.2684 without restraints) Performing minimization step: 1139. Total energy = 2213.4518 kcal/mol (2212.5664 without restraints) Performing minimization step: 1140. Total energy = 2211.7513 kcal/mol (2210.8667 without restraints) Performing minimization step: 1141. Total energy = 2210.0530 kcal/mol (2209.1693 without restraints) Performing minimization step: 1142. Total energy = 2208.3576 kcal/mol (2207.4748 without restraints) Performing minimization step: 1143. Total energy = 2206.6648 kcal/mol (2205.7828 without restraints) Performing minimization step: 1144. Total energy = 2204.9743 kcal/mol (2204.0930 without restraints) Performing minimization step: 1145. Total energy = 2203.2862 kcal/mol (2202.4057 without restraints) Performing minimization step: 1146. Total energy = 2201.6004 kcal/mol (2200.7207 without restraints) Performing minimization step: 1147. Total energy = 2199.9172 kcal/mol (2199.0384 without restraints) Performing minimization step: 1148. Total energy = 2198.2365 kcal/mol (2197.3585 without restraints) Performing minimization step: 1149. Total energy = 2196.5583 kcal/mol (2195.6811 without restraints) Performing minimization step: 1150. Total energy = 2194.8825 kcal/mol (2194.0062 without restraints) Performing minimization step: 1151. Total energy = 2193.2092 kcal/mol (2192.3337 without restraints) Performing minimization step: 1152. Total energy = 2191.5384 kcal/mol (2190.6637 without restraints) Performing minimization step: 1153. Total energy = 2189.8700 kcal/mol (2188.9962 without restraints) Performing minimization step: 1154. Total energy = 2188.2041 kcal/mol (2187.3310 without restraints) Performing minimization step: 1155. Total energy = 2186.5406 kcal/mol (2185.6683 without restraints) Performing minimization step: 1156. Total energy = 2184.8797 kcal/mol (2184.0084 without restraints) Performing minimization step: 1157. Total energy = 2183.2211 kcal/mol (2182.3506 without restraints) Performing minimization step: 1158. Total energy = 2181.5649 kcal/mol (2180.6952 without restraints) Performing minimization step: 1159. Total energy = 2179.9112 kcal/mol (2179.0423 without restraints) Performing minimization step: 1160. Total energy = 2178.2598 kcal/mol (2177.3917 without restraints) Performing minimization step: 1161. Total energy = 2176.6109 kcal/mol (2175.7436 without restraints) Performing minimization step: 1162. Total energy = 2174.9643 kcal/mol (2174.0977 without restraints) Performing minimization step: 1163. Total energy = 2173.3201 kcal/mol (2172.4545 without restraints) Performing minimization step: 1164. Total energy = 2171.6784 kcal/mol (2170.8135 without restraints) Performing minimization step: 1165. Total energy = 2170.0391 kcal/mol (2169.1751 without restraints) Performing minimization step: 1166. Total energy = 2168.4022 kcal/mol (2167.5390 without restraints) Performing minimization step: 1167. Total energy = 2166.7679 kcal/mol (2165.9055 without restraints) Performing minimization step: 1168. Total energy = 2165.1358 kcal/mol (2164.2742 without restraints) Performing minimization step: 1169. Total energy = 2163.5059 kcal/mol (2162.6451 without restraints) Performing minimization step: 1170. Total energy = 2161.8786 kcal/mol (2161.0186 without restraints) Performing minimization step: 1171. Total energy = 2160.2537 kcal/mol (2159.3945 without restraints) Performing minimization step: 1172. Total energy = 2158.6311 kcal/mol (2157.7728 without restraints) Performing minimization step: 1173. Total energy = 2157.0109 kcal/mol (2156.1534 without restraints) Performing minimization step: 1174. Total energy = 2155.3933 kcal/mol (2154.5366 without restraints) Performing minimization step: 1175. Total energy = 2153.7779 kcal/mol (2152.9220 without restraints) Performing minimization step: 1176. Total energy = 2152.1648 kcal/mol (2151.3098 without restraints) Performing minimization step: 1177. Total energy = 2150.5542 kcal/mol (2149.6999 without restraints) Performing minimization step: 1178. Total energy = 2148.9460 kcal/mol (2148.0928 without restraints) Performing minimization step: 1179. Total energy = 2147.3403 kcal/mol (2146.4876 without restraints) Performing minimization step: 1180. Total energy = 2145.7366 kcal/mol (2144.8848 without restraints) Performing minimization step: 1181. Total energy = 2144.1353 kcal/mol (2143.2843 without restraints) Performing minimization step: 1182. Total energy = 2142.5364 kcal/mol (2141.6862 without restraints) Performing minimization step: 1183. Total energy = 2140.9398 kcal/mol (2140.0904 without restraints) Performing minimization step: 1184. Total energy = 2139.3456 kcal/mol (2138.4970 without restraints) Performing minimization step: 1185. Total energy = 2137.7536 kcal/mol (2136.9057 without restraints) Performing minimization step: 1186. Total energy = 2136.1640 kcal/mol (2135.3170 without restraints) Performing minimization step: 1187. Total energy = 2134.5767 kcal/mol (2133.7305 without restraints) Performing minimization step: 1188. Total energy = 2132.9918 kcal/mol (2132.1464 without restraints) Performing minimization step: 1189. Total energy = 2131.4092 kcal/mol (2130.5646 without restraints) Performing minimization step: 1190. Total energy = 2129.8291 kcal/mol (2128.9853 without restraints) Performing minimization step: 1191. Total energy = 2128.2512 kcal/mol (2127.4082 without restraints) Performing minimization step: 1192. Total energy = 2126.6757 kcal/mol (2125.8335 without restraints) Performing minimization step: 1193. Total energy = 2125.1026 kcal/mol (2124.2612 without restraints) Performing minimization step: 1194. Total energy = 2123.5315 kcal/mol (2122.6909 without restraints) Performing minimization step: 1195. Total energy = 2121.9628 kcal/mol (2121.1230 without restraints) Performing minimization step: 1196. Total energy = 2120.3964 kcal/mol (2119.5574 without restraints) Performing minimization step: 1197. Total energy = 2118.8323 kcal/mol (2117.9941 without restraints) Performing minimization step: 1198. Total energy = 2117.2704 kcal/mol (2116.4330 without restraints) Performing minimization step: 1199. Total energy = 2115.7113 kcal/mol (2114.8747 without restraints) Performing minimization step: 1200. Total energy = 2114.1543 kcal/mol (2113.3185 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 2112.5990 kcal/mol (2111.7640 without restraints) Performing minimization step: 1202. Total energy = 2111.0464 kcal/mol (2110.2121 without restraints) Performing minimization step: 1203. Total energy = 2109.4959 kcal/mol (2108.6625 without restraints) Performing minimization step: 1204. Total energy = 2107.9480 kcal/mol (2107.1153 without restraints) Performing minimization step: 1205. Total energy = 2106.4021 kcal/mol (2105.5703 without restraints) Performing minimization step: 1206. Total energy = 2104.8585 kcal/mol (2104.0275 without restraints) Performing minimization step: 1207. Total energy = 2103.3172 kcal/mol (2102.4869 without restraints) Performing minimization step: 1208. Total energy = 2101.7778 kcal/mol (2100.9484 without restraints) Performing minimization step: 1209. Total energy = 2100.2410 kcal/mol (2099.4124 without restraints) Performing minimization step: 1210. Total energy = 2098.7066 kcal/mol (2097.8788 without restraints) Performing minimization step: 1211. Total energy = 2097.1744 kcal/mol (2096.3473 without restraints) Performing minimization step: 1212. Total energy = 2095.6443 kcal/mol (2094.8180 without restraints) Performing minimization step: 1213. Total energy = 2094.1165 kcal/mol (2093.2910 without restraints) Performing minimization step: 1214. Total energy = 2092.5910 kcal/mol (2091.7663 without restraints) Performing minimization step: 1215. Total energy = 2091.0677 kcal/mol (2090.2437 without restraints) Performing minimization step: 1216. Total energy = 2089.5466 kcal/mol (2088.7234 without restraints) Performing minimization step: 1217. Total energy = 2088.0277 kcal/mol (2087.2053 without restraints) Performing minimization step: 1218. Total energy = 2086.5111 kcal/mol (2085.6895 without restraints) Performing minimization step: 1219. Total energy = 2084.9967 kcal/mol (2084.1759 without restraints) Performing minimization step: 1220. Total energy = 2083.4847 kcal/mol (2082.6647 without restraints) Performing minimization step: 1221. Total energy = 2081.9747 kcal/mol (2081.1555 without restraints) Performing minimization step: 1222. Total energy = 2080.4670 kcal/mol (2079.6486 without restraints) Performing minimization step: 1223. Total energy = 2078.9615 kcal/mol (2078.1439 without restraints) Performing minimization step: 1224. Total energy = 2077.4582 kcal/mol (2076.6413 without restraints) Performing minimization step: 1225. Total energy = 2075.9571 kcal/mol (2075.1410 without restraints) Performing minimization step: 1226. Total energy = 2074.4582 kcal/mol (2073.6429 without restraints) Performing minimization step: 1227. Total energy = 2072.9617 kcal/mol (2072.1473 without restraints) Performing minimization step: 1228. Total energy = 2071.4673 kcal/mol (2070.6536 without restraints) Performing minimization step: 1229. Total energy = 2069.9750 kcal/mol (2069.1621 without restraints) Performing minimization step: 1230. Total energy = 2068.4850 kcal/mol (2067.6728 without restraints) Performing minimization step: 1231. Total energy = 2066.9971 kcal/mol (2066.1857 without restraints) Performing minimization step: 1232. Total energy = 2065.5113 kcal/mol (2064.7007 without restraints) Performing minimization step: 1233. Total energy = 2064.0278 kcal/mol (2063.2180 without restraints) Performing minimization step: 1234. Total energy = 2062.5467 kcal/mol (2061.7376 without restraints) Performing minimization step: 1235. Total energy = 2061.0676 kcal/mol (2060.2593 without restraints) Performing minimization step: 1236. Total energy = 2059.5906 kcal/mol (2058.7831 without restraints) Performing minimization step: 1237. Total energy = 2058.1157 kcal/mol (2057.3090 without restraints) Performing minimization step: 1238. Total energy = 2056.6431 kcal/mol (2055.8371 without restraints) Performing minimization step: 1239. Total energy = 2055.1728 kcal/mol (2054.3676 without restraints) Performing minimization step: 1240. Total energy = 2053.7047 kcal/mol (2052.9003 without restraints) Performing minimization step: 1241. Total energy = 2052.2388 kcal/mol (2051.4352 without restraints) Performing minimization step: 1242. Total energy = 2050.7748 kcal/mol (2049.9719 without restraints) Performing minimization step: 1243. Total energy = 2049.3130 kcal/mol (2048.5109 without restraints) Performing minimization step: 1244. Total energy = 2047.8533 kcal/mol (2047.0520 without restraints) Performing minimization step: 1245. Total energy = 2046.3958 kcal/mol (2045.5953 without restraints) Performing minimization step: 1246. Total energy = 2044.9404 kcal/mol (2044.1407 without restraints) Performing minimization step: 1247. Total energy = 2043.4872 kcal/mol (2042.6882 without restraints) Performing minimization step: 1248. Total energy = 2042.0361 kcal/mol (2041.2379 without restraints) Performing minimization step: 1249. Total energy = 2040.5872 kcal/mol (2039.7897 without restraints) Performing minimization step: 1250. Total energy = 2039.1403 kcal/mol (2038.3437 without restraints) Performing minimization step: 1251. Total energy = 2037.6957 kcal/mol (2036.8998 without restraints) Performing minimization step: 1252. Total energy = 2036.2531 kcal/mol (2035.4580 without restraints) Performing minimization step: 1253. Total energy = 2034.8129 kcal/mol (2034.0185 without restraints) Performing minimization step: 1254. Total energy = 2033.3746 kcal/mol (2032.5810 without restraints) Performing minimization step: 1255. Total energy = 2031.9384 kcal/mol (2031.1456 without restraints) Performing minimization step: 1256. Total energy = 2030.5044 kcal/mol (2029.7123 without restraints) Performing minimization step: 1257. Total energy = 2029.0725 kcal/mol (2028.2812 without restraints) Performing minimization step: 1258. Total energy = 2027.6426 kcal/mol (2026.8521 without restraints) Performing minimization step: 1259. Total energy = 2026.2149 kcal/mol (2025.4251 without restraints) Performing minimization step: 1260. Total energy = 2024.7893 kcal/mol (2024.0003 without restraints) Performing minimization step: 1261. Total energy = 2023.3658 kcal/mol (2022.5776 without restraints) Performing minimization step: 1262. Total energy = 2021.9442 kcal/mol (2021.1567 without restraints) Performing minimization step: 1263. Total energy = 2020.5249 kcal/mol (2019.7382 without restraints) Performing minimization step: 1264. Total energy = 2019.1079 kcal/mol (2018.3220 without restraints) Performing minimization step: 1265. Total energy = 2017.6928 kcal/mol (2016.9077 without restraints) Performing minimization step: 1266. Total energy = 2016.2798 kcal/mol (2015.4954 without restraints) Performing minimization step: 1267. Total energy = 2014.8689 kcal/mol (2014.0853 without restraints) Performing minimization step: 1268. Total energy = 2013.4601 kcal/mol (2012.6772 without restraints) Performing minimization step: 1269. Total energy = 2012.0534 kcal/mol (2011.2713 without restraints) Performing minimization step: 1270. Total energy = 2010.6487 kcal/mol (2009.8674 without restraints) Performing minimization step: 1271. Total energy = 2009.2462 kcal/mol (2008.4656 without restraints) Performing minimization step: 1272. Total energy = 2007.8457 kcal/mol (2007.0658 without restraints) Performing minimization step: 1273. Total energy = 2006.4472 kcal/mol (2005.6682 without restraints) Performing minimization step: 1274. Total energy = 2005.0509 kcal/mol (2004.2726 without restraints) Performing minimization step: 1275. Total energy = 2003.6564 kcal/mol (2002.8789 without restraints) Performing minimization step: 1276. Total energy = 2002.2644 kcal/mol (2001.4876 without restraints) Performing minimization step: 1277. Total energy = 2000.8743 kcal/mol (2000.0982 without restraints) Performing minimization step: 1278. Total energy = 1999.4861 kcal/mol (1998.7109 without restraints) Performing minimization step: 1279. Total energy = 1998.1005 kcal/mol (1997.3260 without restraints) Performing minimization step: 1280. Total energy = 1996.7166 kcal/mol (1995.9430 without restraints) Performing minimization step: 1281. Total energy = 1995.3348 kcal/mol (1994.5618 without restraints) Performing minimization step: 1282. Total energy = 1993.9549 kcal/mol (1993.1826 without restraints) Performing minimization step: 1283. Total energy = 1992.5770 kcal/mol (1991.8055 without restraints) Performing minimization step: 1284. Total energy = 1991.2014 kcal/mol (1990.4306 without restraints) Performing minimization step: 1285. Total energy = 1989.8276 kcal/mol (1989.0576 without restraints) Performing minimization step: 1286. Total energy = 1988.4559 kcal/mol (1987.6867 without restraints) Performing minimization step: 1287. Total energy = 1987.0863 kcal/mol (1986.3178 without restraints) Performing minimization step: 1288. Total energy = 1985.7186 kcal/mol (1984.9509 without restraints) Performing minimization step: 1289. Total energy = 1984.3532 kcal/mol (1983.5862 without restraints) Performing minimization step: 1290. Total energy = 1982.9894 kcal/mol (1982.2232 without restraints) Performing minimization step: 1291. Total energy = 1981.6279 kcal/mol (1980.8624 without restraints) Performing minimization step: 1292. Total energy = 1980.2683 kcal/mol (1979.5036 without restraints) Performing minimization step: 1293. Total energy = 1978.9107 kcal/mol (1978.1467 without restraints) Performing minimization step: 1294. Total energy = 1977.5552 kcal/mol (1976.7920 without restraints) Performing minimization step: 1295. Total energy = 1976.2017 kcal/mol (1975.4392 without restraints) Performing minimization step: 1296. Total energy = 1974.8503 kcal/mol (1974.0885 without restraints) Performing minimization step: 1297. Total energy = 1973.5010 kcal/mol (1972.7402 without restraints) Performing minimization step: 1298. Total energy = 1972.1537 kcal/mol (1971.3935 without restraints) Performing minimization step: 1299. Total energy = 1970.8083 kcal/mol (1970.0488 without restraints) Performing minimization step: 1300. Total energy = 1969.4648 kcal/mol (1968.7061 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 1968.1235 kcal/mol (1967.3656 without restraints) Performing minimization step: 1302. Total energy = 1966.7841 kcal/mol (1966.0269 without restraints) Performing minimization step: 1303. Total energy = 1965.4466 kcal/mol (1964.6901 without restraints) Performing minimization step: 1304. Total energy = 1964.1112 kcal/mol (1963.3554 without restraints) Performing minimization step: 1305. Total energy = 1962.7777 kcal/mol (1962.0227 without restraints) Performing minimization step: 1306. Total energy = 1961.4462 kcal/mol (1960.6919 without restraints) Performing minimization step: 1307. Total energy = 1960.1167 kcal/mol (1959.3631 without restraints) Performing minimization step: 1308. Total energy = 1958.7891 kcal/mol (1958.0364 without restraints) Performing minimization step: 1309. Total energy = 1957.4636 kcal/mol (1956.7115 without restraints) Performing minimization step: 1310. Total energy = 1956.1400 kcal/mol (1955.3887 without restraints) Performing minimization step: 1311. Total energy = 1954.8184 kcal/mol (1954.0678 without restraints) Performing minimization step: 1312. Total energy = 1953.4988 kcal/mol (1952.7489 without restraints) Performing minimization step: 1313. Total energy = 1952.1811 kcal/mol (1951.4320 without restraints) Performing minimization step: 1314. Total energy = 1950.8654 kcal/mol (1950.1170 without restraints) Performing minimization step: 1315. Total energy = 1949.5516 kcal/mol (1948.8040 without restraints) Performing minimization step: 1316. Total energy = 1948.2399 kcal/mol (1947.4930 without restraints) Performing minimization step: 1317. Total energy = 1946.9300 kcal/mol (1946.1839 without restraints) Performing minimization step: 1318. Total energy = 1945.6222 kcal/mol (1944.8768 without restraints) Performing minimization step: 1319. Total energy = 1944.3162 kcal/mol (1943.5716 without restraints) Performing minimization step: 1320. Total energy = 1943.0123 kcal/mol (1942.2684 without restraints) Performing minimization step: 1321. Total energy = 1941.7103 kcal/mol (1940.9671 without restraints) Performing minimization step: 1322. Total energy = 1940.4102 kcal/mol (1939.6678 without restraints) Performing minimization step: 1323. Total energy = 1939.1120 kcal/mol (1938.3704 without restraints) Performing minimization step: 1324. Total energy = 1937.8159 kcal/mol (1937.0749 without restraints) Performing minimization step: 1325. Total energy = 1936.5216 kcal/mol (1935.7814 without restraints) Performing minimization step: 1326. Total energy = 1935.2293 kcal/mol (1934.4898 without restraints) Performing minimization step: 1327. Total energy = 1933.9388 kcal/mol (1933.2001 without restraints) Performing minimization step: 1328. Total energy = 1932.6504 kcal/mol (1931.9124 without restraints) Performing minimization step: 1329. Total energy = 1931.3636 kcal/mol (1930.6263 without restraints) Performing minimization step: 1330. Total energy = 1930.0792 kcal/mol (1929.3427 without restraints) Performing minimization step: 1331. Total energy = 1928.7965 kcal/mol (1928.0607 without restraints) Performing minimization step: 1332. Total energy = 1927.5157 kcal/mol (1926.7807 without restraints) Performing minimization step: 1333. Total energy = 1926.2367 kcal/mol (1925.5023 without restraints) Performing minimization step: 1334. Total energy = 1924.9597 kcal/mol (1924.2261 without restraints) Performing minimization step: 1335. Total energy = 1923.6847 kcal/mol (1922.9518 without restraints) Performing minimization step: 1336. Total energy = 1922.4115 kcal/mol (1921.6794 without restraints) Performing minimization step: 1337. Total energy = 1921.1403 kcal/mol (1920.4089 without restraints) Performing minimization step: 1338. Total energy = 1919.8710 kcal/mol (1919.1403 without restraints) Performing minimization step: 1339. Total energy = 1918.6038 kcal/mol (1917.8738 without restraints) Performing minimization step: 1340. Total energy = 1917.3383 kcal/mol (1916.6090 without restraints) Performing minimization step: 1341. Total energy = 1916.0746 kcal/mol (1915.3461 without restraints) Performing minimization step: 1342. Total energy = 1914.8129 kcal/mol (1914.0851 without restraints) Performing minimization step: 1343. Total energy = 1913.5531 kcal/mol (1912.8260 without restraints) Performing minimization step: 1344. Total energy = 1912.2949 kcal/mol (1911.5686 without restraints) Performing minimization step: 1345. Total energy = 1911.0391 kcal/mol (1910.3135 without restraints) Performing minimization step: 1346. Total energy = 1909.7849 kcal/mol (1909.0600 without restraints) Performing minimization step: 1347. Total energy = 1908.5326 kcal/mol (1907.8084 without restraints) Performing minimization step: 1348. Total energy = 1907.2820 kcal/mol (1906.5585 without restraints) Performing minimization step: 1349. Total energy = 1906.0334 kcal/mol (1905.3107 without restraints) Performing minimization step: 1350. Total energy = 1904.7867 kcal/mol (1904.0647 without restraints) Performing minimization step: 1351. Total energy = 1903.5419 kcal/mol (1902.8206 without restraints) Performing minimization step: 1352. Total energy = 1902.2990 kcal/mol (1901.5784 without restraints) Performing minimization step: 1353. Total energy = 1901.0579 kcal/mol (1900.3381 without restraints) Performing minimization step: 1354. Total energy = 1899.8187 kcal/mol (1899.0996 without restraints) Performing minimization step: 1355. Total energy = 1898.5813 kcal/mol (1897.8629 without restraints) Performing minimization step: 1356. Total energy = 1897.3458 kcal/mol (1896.6281 without restraints) Performing minimization step: 1357. Total energy = 1896.1121 kcal/mol (1895.3952 without restraints) Performing minimization step: 1358. Total energy = 1894.8805 kcal/mol (1894.1643 without restraints) Performing minimization step: 1359. Total energy = 1893.6506 kcal/mol (1892.9351 without restraints) Performing minimization step: 1360. Total energy = 1892.4225 kcal/mol (1891.7077 without restraints) Performing minimization step: 1361. Total energy = 1891.1961 kcal/mol (1890.4820 without restraints) Performing minimization step: 1362. Total energy = 1889.9717 kcal/mol (1889.2584 without restraints) Performing minimization step: 1363. Total energy = 1888.7491 kcal/mol (1888.0365 without restraints) Performing minimization step: 1364. Total energy = 1887.5286 kcal/mol (1886.8167 without restraints) Performing minimization step: 1365. Total energy = 1886.3097 kcal/mol (1885.5985 without restraints) Performing minimization step: 1366. Total energy = 1885.0926 kcal/mol (1884.3821 without restraints) Performing minimization step: 1367. Total energy = 1883.8773 kcal/mol (1883.1676 without restraints) Performing minimization step: 1368. Total energy = 1882.6639 kcal/mol (1881.9548 without restraints) Performing minimization step: 1369. Total energy = 1881.4523 kcal/mol (1880.7439 without restraints) Performing minimization step: 1370. Total energy = 1880.2425 kcal/mol (1879.5348 without restraints) Performing minimization step: 1371. Total energy = 1879.0345 kcal/mol (1878.3276 without restraints) Performing minimization step: 1372. Total energy = 1877.8284 kcal/mol (1877.1222 without restraints) Performing minimization step: 1373. Total energy = 1876.6240 kcal/mol (1875.9185 without restraints) Performing minimization step: 1374. Total energy = 1875.4215 kcal/mol (1874.7167 without restraints) Performing minimization step: 1375. Total energy = 1874.2208 kcal/mol (1873.5167 without restraints) Performing minimization step: 1376. Total energy = 1873.0218 kcal/mol (1872.3185 without restraints) Performing minimization step: 1377. Total energy = 1871.8247 kcal/mol (1871.1220 without restraints) Performing minimization step: 1378. Total energy = 1870.6293 kcal/mol (1869.9274 without restraints) Performing minimization step: 1379. Total energy = 1869.4358 kcal/mol (1868.7346 without restraints) Performing minimization step: 1380. Total energy = 1868.2441 kcal/mol (1867.5436 without restraints) Performing minimization step: 1381. Total energy = 1867.0541 kcal/mol (1866.3543 without restraints) Performing minimization step: 1382. Total energy = 1865.8655 kcal/mol (1865.1664 without restraints) Performing minimization step: 1383. Total energy = 1864.6791 kcal/mol (1863.9807 without restraints) Performing minimization step: 1384. Total energy = 1863.4945 kcal/mol (1862.7969 without restraints) Performing minimization step: 1385. Total energy = 1862.3117 kcal/mol (1861.6147 without restraints) Performing minimization step: 1386. Total energy = 1861.1309 kcal/mol (1860.4346 without restraints) Performing minimization step: 1387. Total energy = 1859.9516 kcal/mol (1859.2560 without restraints) Performing minimization step: 1388. Total energy = 1858.7741 kcal/mol (1858.0792 without restraints) Performing minimization step: 1389. Total energy = 1857.5984 kcal/mol (1856.9042 without restraints) Performing minimization step: 1390. Total energy = 1856.4244 kcal/mol (1855.7309 without restraints) Performing minimization step: 1391. Total energy = 1855.2522 kcal/mol (1854.5595 without restraints) Performing minimization step: 1392. Total energy = 1854.0815 kcal/mol (1853.3894 without restraints) Performing minimization step: 1393. Total energy = 1852.9128 kcal/mol (1852.2215 without restraints) Performing minimization step: 1394. Total energy = 1851.7460 kcal/mol (1851.0554 without restraints) Performing minimization step: 1395. Total energy = 1850.5809 kcal/mol (1849.8909 without restraints) Performing minimization step: 1396. Total energy = 1849.4174 kcal/mol (1848.7282 without restraints) Performing minimization step: 1397. Total energy = 1848.2558 kcal/mol (1847.5672 without restraints) Performing minimization step: 1398. Total energy = 1847.0958 kcal/mol (1846.4080 without restraints) Performing minimization step: 1399. Total energy = 1845.9376 kcal/mol (1845.2505 without restraints) Performing minimization step: 1400. Total energy = 1844.7812 kcal/mol (1844.0948 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 1843.6265 kcal/mol (1842.9407 without restraints) Performing minimization step: 1402. Total energy = 1842.4737 kcal/mol (1841.7886 without restraints) Performing minimization step: 1403. Total energy = 1841.3225 kcal/mol (1840.6381 without restraints) Performing minimization step: 1404. Total energy = 1840.1729 kcal/mol (1839.4893 without restraints) Performing minimization step: 1405. Total energy = 1839.0251 kcal/mol (1838.3422 without restraints) Performing minimization step: 1406. Total energy = 1837.8791 kcal/mol (1837.1968 without restraints) Performing minimization step: 1407. Total energy = 1836.7348 kcal/mol (1836.0532 without restraints) Performing minimization step: 1408. Total energy = 1835.5922 kcal/mol (1834.9115 without restraints) Performing minimization step: 1409. Total energy = 1834.4514 kcal/mol (1833.7712 without restraints) Performing minimization step: 1410. Total energy = 1833.3122 kcal/mol (1832.6327 without restraints) Performing minimization step: 1411. Total energy = 1832.1747 kcal/mol (1831.4959 without restraints) Performing minimization step: 1412. Total energy = 1831.0389 kcal/mol (1830.3608 without restraints) Performing minimization step: 1413. Total energy = 1829.9048 kcal/mol (1829.2274 without restraints) Performing minimization step: 1414. Total energy = 1828.7725 kcal/mol (1828.0959 without restraints) Performing minimization step: 1415. Total energy = 1827.6417 kcal/mol (1826.9657 without restraints) Performing minimization step: 1416. Total energy = 1826.5127 kcal/mol (1825.8374 without restraints) Performing minimization step: 1417. Total energy = 1825.3856 kcal/mol (1824.7110 without restraints) Performing minimization step: 1418. Total energy = 1824.2601 kcal/mol (1823.5861 without restraints) Performing minimization step: 1419. Total energy = 1823.1361 kcal/mol (1822.4628 without restraints) Performing minimization step: 1420. Total energy = 1822.0139 kcal/mol (1821.3413 without restraints) Performing minimization step: 1421. Total energy = 1820.8933 kcal/mol (1820.2214 without restraints) Performing minimization step: 1422. Total energy = 1819.7742 kcal/mol (1819.1030 without restraints) Performing minimization step: 1423. Total energy = 1818.6569 kcal/mol (1817.9862 without restraints) Performing minimization step: 1424. Total energy = 1817.5412 kcal/mol (1816.8713 without restraints) Performing minimization step: 1425. Total energy = 1816.4273 kcal/mol (1815.7582 without restraints) Performing minimization step: 1426. Total energy = 1815.3153 kcal/mol (1814.6469 without restraints) Performing minimization step: 1427. Total energy = 1814.2050 kcal/mol (1813.5372 without restraints) Performing minimization step: 1428. Total energy = 1813.0961 kcal/mol (1812.4290 without restraints) Performing minimization step: 1429. Total energy = 1811.9889 kcal/mol (1811.3224 without restraints) Performing minimization step: 1430. Total energy = 1810.8833 kcal/mol (1810.2176 without restraints) Performing minimization step: 1431. Total energy = 1809.7794 kcal/mol (1809.1143 without restraints) Performing minimization step: 1432. Total energy = 1808.6770 kcal/mol (1808.0126 without restraints) Performing minimization step: 1433. Total energy = 1807.5763 kcal/mol (1806.9126 without restraints) Performing minimization step: 1434. Total energy = 1806.4774 kcal/mol (1805.8143 without restraints) Performing minimization step: 1435. Total energy = 1805.3800 kcal/mol (1804.7177 without restraints) Performing minimization step: 1436. Total energy = 1804.2843 kcal/mol (1803.6227 without restraints) Performing minimization step: 1437. Total energy = 1803.1903 kcal/mol (1802.5293 without restraints) Performing minimization step: 1438. Total energy = 1802.0978 kcal/mol (1801.4375 without restraints) Performing minimization step: 1439. Total energy = 1801.0070 kcal/mol (1800.3474 without restraints) Performing minimization step: 1440. Total energy = 1799.9179 kcal/mol (1799.2589 without restraints) Performing minimization step: 1441. Total energy = 1798.8303 kcal/mol (1798.1720 without restraints) Performing minimization step: 1442. Total energy = 1797.7442 kcal/mol (1797.0866 without restraints) Performing minimization step: 1443. Total energy = 1796.6599 kcal/mol (1796.0030 without restraints) Performing minimization step: 1444. Total energy = 1795.5772 kcal/mol (1794.9209 without restraints) Performing minimization step: 1445. Total energy = 1794.4955 kcal/mol (1793.8399 without restraints) Performing minimization step: 1446. Total energy = 1793.4161 kcal/mol (1792.7611 without restraints) Performing minimization step: 1447. Total energy = 1792.3382 kcal/mol (1791.6839 without restraints) Performing minimization step: 1448. Total energy = 1791.2619 kcal/mol (1790.6083 without restraints) Performing minimization step: 1449. Total energy = 1790.1872 kcal/mol (1789.5343 without restraints) Performing minimization step: 1450. Total energy = 1789.1142 kcal/mol (1788.4620 without restraints) Performing minimization step: 1451. Total energy = 1788.0427 kcal/mol (1787.3911 without restraints) Performing minimization step: 1452. Total energy = 1786.9728 kcal/mol (1786.3219 without restraints) Performing minimization step: 1453. Total energy = 1785.9045 kcal/mol (1785.2543 without restraints) Performing minimization step: 1454. Total energy = 1784.8378 kcal/mol (1784.1882 without restraints) Performing minimization step: 1455. Total energy = 1783.7726 kcal/mol (1783.1237 without restraints) Performing minimization step: 1456. Total energy = 1782.7088 kcal/mol (1782.0606 without restraints) Performing minimization step: 1457. Total energy = 1781.6469 kcal/mol (1780.9993 without restraints) Performing minimization step: 1458. Total energy = 1780.5864 kcal/mol (1779.9393 without restraints) Performing minimization step: 1459. Total energy = 1779.5274 kcal/mol (1778.8812 without restraints) Performing minimization step: 1460. Total energy = 1778.4701 kcal/mol (1777.8246 without restraints) Performing minimization step: 1461. Total energy = 1777.4148 kcal/mol (1776.7699 without restraints) Performing minimization step: 1462. Total energy = 1776.3606 kcal/mol (1775.7163 without restraints) Performing minimization step: 1463. Total energy = 1775.3080 kcal/mol (1774.6644 without restraints) Performing minimization step: 1464. Total energy = 1774.2570 kcal/mol (1773.6140 without restraints) Performing minimization step: 1465. Total energy = 1773.2075 kcal/mol (1772.5652 without restraints) Performing minimization step: 1466. Total energy = 1772.1595 kcal/mol (1771.5179 without restraints) Performing minimization step: 1467. Total energy = 1771.1132 kcal/mol (1770.4722 without restraints) Performing minimization step: 1468. Total energy = 1770.0685 kcal/mol (1769.4282 without restraints) Performing minimization step: 1469. Total energy = 1769.0252 kcal/mol (1768.3856 without restraints) Performing minimization step: 1470. Total energy = 1767.9837 kcal/mol (1767.3447 without restraints) Performing minimization step: 1471. Total energy = 1766.9434 kcal/mol (1766.3051 without restraints) Performing minimization step: 1472. Total energy = 1765.9048 kcal/mol (1765.2673 without restraints) Performing minimization step: 1473. Total energy = 1764.8676 kcal/mol (1764.2306 without restraints) Performing minimization step: 1474. Total energy = 1763.8321 kcal/mol (1763.1958 without restraints) Performing minimization step: 1475. Total energy = 1762.7978 kcal/mol (1762.1621 without restraints) Performing minimization step: 1476. Total energy = 1761.7652 kcal/mol (1761.1301 without restraints) Performing minimization step: 1477. Total energy = 1760.7341 kcal/mol (1760.0997 without restraints) Performing minimization step: 1478. Total energy = 1759.7045 kcal/mol (1759.0707 without restraints) Performing minimization step: 1479. Total energy = 1758.6764 kcal/mol (1758.0433 without restraints) Performing minimization step: 1480. Total energy = 1757.6498 kcal/mol (1757.0174 without restraints) Performing minimization step: 1481. Total energy = 1756.6247 kcal/mol (1755.9929 without restraints) Performing minimization step: 1482. Total energy = 1755.6011 kcal/mol (1754.9700 without restraints) Performing minimization step: 1483. Total energy = 1754.5790 kcal/mol (1753.9484 without restraints) Performing minimization step: 1484. Total energy = 1753.5583 kcal/mol (1752.9284 without restraints) Performing minimization step: 1485. Total energy = 1752.5391 kcal/mol (1751.9099 without restraints) Performing minimization step: 1486. Total energy = 1751.5215 kcal/mol (1750.8929 without restraints) Performing minimization step: 1487. Total energy = 1750.5053 kcal/mol (1749.8774 without restraints) Performing minimization step: 1488. Total energy = 1749.4907 kcal/mol (1748.8634 without restraints) Performing minimization step: 1489. Total energy = 1748.4775 kcal/mol (1747.8509 without restraints) Performing minimization step: 1490. Total energy = 1747.4658 kcal/mol (1746.8398 without restraints) Performing minimization step: 1491. Total energy = 1746.4555 kcal/mol (1745.8302 without restraints) Performing minimization step: 1492. Total energy = 1745.4467 kcal/mol (1744.8221 without restraints) Performing minimization step: 1493. Total energy = 1744.4394 kcal/mol (1743.8153 without restraints) Performing minimization step: 1494. Total energy = 1743.4335 kcal/mol (1742.8101 without restraints) Performing minimization step: 1495. Total energy = 1742.4292 kcal/mol (1741.8064 without restraints) Performing minimization step: 1496. Total energy = 1741.4266 kcal/mol (1740.8045 without restraints) Performing minimization step: 1497. Total energy = 1740.4249 kcal/mol (1739.8034 without restraints) Performing minimization step: 1498. Total energy = 1739.4249 kcal/mol (1738.8040 without restraints) Performing minimization step: 1499. Total energy = 1738.4263 kcal/mol (1737.8061 without restraints) Performing minimization step: 1500. Total energy = 1737.4291 kcal/mol (1736.8096 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 1736.4334 kcal/mol (1735.8145 without restraints) Performing minimization step: 1502. Total energy = 1735.4391 kcal/mol (1734.8208 without restraints) Performing minimization step: 1503. Total energy = 1734.4463 kcal/mol (1733.8286 without restraints) Performing minimization step: 1504. Total energy = 1733.4549 kcal/mol (1732.8378 without restraints) Performing minimization step: 1505. Total energy = 1732.4649 kcal/mol (1731.8485 without restraints) Performing minimization step: 1506. Total energy = 1731.4763 kcal/mol (1730.8605 without restraints) Performing minimization step: 1507. Total energy = 1730.4891 kcal/mol (1729.8740 without restraints) Performing minimization step: 1508. Total energy = 1729.5034 kcal/mol (1728.8889 without restraints) Performing minimization step: 1509. Total energy = 1728.5190 kcal/mol (1727.9052 without restraints) Performing minimization step: 1510. Total energy = 1727.5361 kcal/mol (1726.9229 without restraints) Performing minimization step: 1511. Total energy = 1726.5546 kcal/mol (1725.9420 without restraints) Performing minimization step: 1512. Total energy = 1725.5745 kcal/mol (1724.9625 without restraints) Performing minimization step: 1513. Total energy = 1724.5958 kcal/mol (1723.9844 without restraints) Performing minimization step: 1514. Total energy = 1723.6184 kcal/mol (1723.0077 without restraints) Performing minimization step: 1515. Total energy = 1722.6423 kcal/mol (1722.0322 without restraints) Performing minimization step: 1516. Total energy = 1721.6678 kcal/mol (1721.0583 without restraints) Performing minimization step: 1517. Total energy = 1720.6946 kcal/mol (1720.0858 without restraints) Performing minimization step: 1518. Total energy = 1719.7228 kcal/mol (1719.1146 without restraints) Performing minimization step: 1519. Total energy = 1718.7524 kcal/mol (1718.1448 without restraints) Performing minimization step: 1520. Total energy = 1717.7834 kcal/mol (1717.1764 without restraints) Performing minimization step: 1521. Total energy = 1716.8158 kcal/mol (1716.2094 without restraints) Performing minimization step: 1522. Total energy = 1715.8495 kcal/mol (1715.2438 without restraints) Performing minimization step: 1523. Total energy = 1714.8846 kcal/mol (1714.2795 without restraints) Performing minimization step: 1524. Total energy = 1713.9211 kcal/mol (1713.3167 without restraints) Performing minimization step: 1525. Total energy = 1712.9590 kcal/mol (1712.3551 without restraints) Performing minimization step: 1526. Total energy = 1711.9981 kcal/mol (1711.3949 without restraints) Performing minimization step: 1527. Total energy = 1711.0386 kcal/mol (1710.4360 without restraints) Performing minimization step: 1528. Total energy = 1710.0805 kcal/mol (1709.4785 without restraints) Performing minimization step: 1529. Total energy = 1709.1237 kcal/mol (1708.5223 without restraints) Performing minimization step: 1530. Total energy = 1708.1682 kcal/mol (1707.5674 without restraints) Performing minimization step: 1531. Total energy = 1707.2141 kcal/mol (1706.6140 without restraints) Performing minimization step: 1532. Total energy = 1706.2614 kcal/mol (1705.6618 without restraints) Performing minimization step: 1533. Total energy = 1705.3099 kcal/mol (1704.7110 without restraints) Performing minimization step: 1534. Total energy = 1704.3596 kcal/mol (1703.7612 without restraints) Performing minimization step: 1535. Total energy = 1703.4108 kcal/mol (1702.8130 without restraints) Performing minimization step: 1536. Total energy = 1702.4633 kcal/mol (1701.8661 without restraints) Performing minimization step: 1537. Total energy = 1701.5173 kcal/mol (1700.9208 without restraints) Performing minimization step: 1538. Total energy = 1700.5725 kcal/mol (1699.9766 without restraints) Performing minimization step: 1539. Total energy = 1699.6290 kcal/mol (1699.0337 without restraints) Performing minimization step: 1540. Total energy = 1698.6868 kcal/mol (1698.0921 without restraints) Performing minimization step: 1541. Total energy = 1697.7459 kcal/mol (1697.1518 without restraints) Performing minimization step: 1542. Total energy = 1696.8062 kcal/mol (1696.2128 without restraints) Performing minimization step: 1543. Total energy = 1695.8680 kcal/mol (1695.2751 without restraints) Performing minimization step: 1544. Total energy = 1694.9310 kcal/mol (1694.3387 without restraints) Performing minimization step: 1545. Total energy = 1693.9953 kcal/mol (1693.4036 without restraints) Performing minimization step: 1546. Total energy = 1693.0607 kcal/mol (1692.4695 without restraints) Performing minimization step: 1547. Total energy = 1692.1273 kcal/mol (1691.5368 without restraints) Performing minimization step: 1548. Total energy = 1691.1954 kcal/mol (1690.6055 without restraints) Performing minimization step: 1549. Total energy = 1690.2648 kcal/mol (1689.6755 without restraints) Performing minimization step: 1550. Total energy = 1689.3356 kcal/mol (1688.7470 without restraints) Performing minimization step: 1551. Total energy = 1688.4076 kcal/mol (1687.8196 without restraints) Performing minimization step: 1552. Total energy = 1687.4809 kcal/mol (1686.8934 without restraints) Performing minimization step: 1553. Total energy = 1686.5554 kcal/mol (1685.9685 without restraints) Performing minimization step: 1554. Total energy = 1685.6312 kcal/mol (1685.0449 without restraints) Performing minimization step: 1555. Total energy = 1684.7081 kcal/mol (1684.1224 without restraints) Performing minimization step: 1556. Total energy = 1683.7865 kcal/mol (1683.2014 without restraints) Performing minimization step: 1557. Total energy = 1682.8660 kcal/mol (1682.2815 without restraints) Performing minimization step: 1558. Total energy = 1681.9467 kcal/mol (1681.3628 without restraints) Performing minimization step: 1559. Total energy = 1681.0289 kcal/mol (1680.4456 without restraints) Performing minimization step: 1560. Total energy = 1680.1121 kcal/mol (1679.5294 without restraints) Performing minimization step: 1561. Total energy = 1679.1967 kcal/mol (1678.6147 without restraints) Performing minimization step: 1562. Total energy = 1678.2825 kcal/mol (1677.7010 without restraints) Performing minimization step: 1563. Total energy = 1677.3695 kcal/mol (1676.7885 without restraints) Performing minimization step: 1564. Total energy = 1676.4576 kcal/mol (1675.8773 without restraints) Performing minimization step: 1565. Total energy = 1675.5470 kcal/mol (1674.9673 without restraints) Performing minimization step: 1566. Total energy = 1674.6376 kcal/mol (1674.0585 without restraints) Performing minimization step: 1567. Total energy = 1673.7293 kcal/mol (1673.1507 without restraints) Performing minimization step: 1568. Total energy = 1672.8223 kcal/mol (1672.2443 without restraints) Performing minimization step: 1569. Total energy = 1671.9170 kcal/mol (1671.3396 without restraints) Performing minimization step: 1570. Total energy = 1671.0125 kcal/mol (1670.4357 without restraints) Performing minimization step: 1571. Total energy = 1670.1092 kcal/mol (1669.5329 without restraints) Performing minimization step: 1572. Total energy = 1669.2069 kcal/mol (1668.6312 without restraints) Performing minimization step: 1573. Total energy = 1668.3060 kcal/mol (1667.7308 without restraints) Performing minimization step: 1574. Total energy = 1667.4062 kcal/mol (1666.8317 without restraints) Performing minimization step: 1575. Total energy = 1666.5074 kcal/mol (1665.9335 without restraints) Performing minimization step: 1576. Total energy = 1665.6101 kcal/mol (1665.0367 without restraints) Performing minimization step: 1577. Total energy = 1664.7139 kcal/mol (1664.1411 without restraints) Performing minimization step: 1578. Total energy = 1663.8189 kcal/mol (1663.2467 without restraints) Performing minimization step: 1579. Total energy = 1662.9251 kcal/mol (1662.3534 without restraints) Performing minimization step: 1580. Total energy = 1662.0324 kcal/mol (1661.4614 without restraints) Performing minimization step: 1581. Total energy = 1661.1410 kcal/mol (1660.5705 without restraints) Performing minimization step: 1582. Total energy = 1660.2509 kcal/mol (1659.6810 without restraints) Performing minimization step: 1583. Total energy = 1659.3617 kcal/mol (1658.7924 without restraints) Performing minimization step: 1584. Total energy = 1658.4737 kcal/mol (1657.9050 without restraints) Performing minimization step: 1585. Total energy = 1657.5869 kcal/mol (1657.0187 without restraints) Performing minimization step: 1586. Total energy = 1656.7010 kcal/mol (1656.1334 without restraints) Performing minimization step: 1587. Total energy = 1655.8165 kcal/mol (1655.2495 without restraints) Performing minimization step: 1588. Total energy = 1654.9331 kcal/mol (1654.3667 without restraints) Performing minimization step: 1589. Total energy = 1654.0509 kcal/mol (1653.4850 without restraints) Performing minimization step: 1590. Total energy = 1653.1700 kcal/mol (1652.6046 without restraints) Performing minimization step: 1591. Total energy = 1652.2902 kcal/mol (1651.7254 without restraints) Performing minimization step: 1592. Total energy = 1651.4114 kcal/mol (1650.8471 without restraints) Performing minimization step: 1593. Total energy = 1650.5337 kcal/mol (1649.9700 without restraints) Performing minimization step: 1594. Total energy = 1649.6571 kcal/mol (1649.0940 without restraints) Performing minimization step: 1595. Total energy = 1648.7816 kcal/mol (1648.2190 without restraints) Performing minimization step: 1596. Total energy = 1647.9072 kcal/mol (1647.3452 without restraints) Performing minimization step: 1597. Total energy = 1647.0339 kcal/mol (1646.4725 without restraints) Performing minimization step: 1598. Total energy = 1646.1620 kcal/mol (1645.6012 without restraints) Performing minimization step: 1599. Total energy = 1645.2910 kcal/mol (1644.7306 without restraints) Performing minimization step: 1600. Total energy = 1644.4210 kcal/mol (1643.8613 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 1643.5522 kcal/mol (1642.9930 without restraints) Performing minimization step: 1602. Total energy = 1642.6844 kcal/mol (1642.1258 without restraints) Performing minimization step: 1603. Total energy = 1641.8178 kcal/mol (1641.2597 without restraints) Performing minimization step: 1604. Total energy = 1640.9524 kcal/mol (1640.3949 without restraints) Performing minimization step: 1605. Total energy = 1640.0879 kcal/mol (1639.5309 without restraints) Performing minimization step: 1606. Total energy = 1639.2245 kcal/mol (1638.6681 without restraints) Performing minimization step: 1607. Total energy = 1638.3622 kcal/mol (1637.8064 without restraints) Performing minimization step: 1608. Total energy = 1637.5011 kcal/mol (1636.9459 without restraints) Performing minimization step: 1609. Total energy = 1636.6410 kcal/mol (1636.0863 without restraints) Performing minimization step: 1610. Total energy = 1635.7818 kcal/mol (1635.2276 without restraints) Performing minimization step: 1611. Total energy = 1634.9238 kcal/mol (1634.3701 without restraints) Performing minimization step: 1612. Total energy = 1634.0669 kcal/mol (1633.5137 without restraints) Performing minimization step: 1613. Total energy = 1633.2110 kcal/mol (1632.6584 without restraints) Performing minimization step: 1614. Total energy = 1632.3562 kcal/mol (1631.8041 without restraints) Performing minimization step: 1615. Total energy = 1631.5024 kcal/mol (1630.9509 without restraints) Performing minimization step: 1616. Total energy = 1630.6497 kcal/mol (1630.0988 without restraints) Performing minimization step: 1617. Total energy = 1629.7981 kcal/mol (1629.2476 without restraints) Performing minimization step: 1618. Total energy = 1628.9474 kcal/mol (1628.3976 without restraints) Performing minimization step: 1619. Total energy = 1628.0979 kcal/mol (1627.5486 without restraints) Performing minimization step: 1620. Total energy = 1627.2494 kcal/mol (1626.7006 without restraints) Performing minimization step: 1621. Total energy = 1626.4019 kcal/mol (1625.8538 without restraints) Performing minimization step: 1622. Total energy = 1625.5555 kcal/mol (1625.0078 without restraints) Performing minimization step: 1623. Total energy = 1624.7101 kcal/mol (1624.1629 without restraints) Performing minimization step: 1624. Total energy = 1623.8655 kcal/mol (1623.3188 without restraints) Performing minimization step: 1625. Total energy = 1623.0221 kcal/mol (1622.4760 without restraints) Performing minimization step: 1626. Total energy = 1622.1797 kcal/mol (1621.6341 without restraints) Performing minimization step: 1627. Total energy = 1621.3387 kcal/mol (1620.7937 without restraints) Performing minimization step: 1628. Total energy = 1620.4984 kcal/mol (1619.9539 without restraints) Performing minimization step: 1629. Total energy = 1619.6593 kcal/mol (1619.1153 without restraints) Performing minimization step: 1630. Total energy = 1618.8210 kcal/mol (1618.2775 without restraints) Performing minimization step: 1631. Total energy = 1617.9836 kcal/mol (1617.4407 without restraints) Performing minimization step: 1632. Total energy = 1617.1473 kcal/mol (1616.6049 without restraints) Performing minimization step: 1633. Total energy = 1616.3120 kcal/mol (1615.7702 without restraints) Performing minimization step: 1634. Total energy = 1615.4777 kcal/mol (1614.9363 without restraints) Performing minimization step: 1635. Total energy = 1614.6443 kcal/mol (1614.1035 without restraints) Performing minimization step: 1636. Total energy = 1613.8120 kcal/mol (1613.2717 without restraints) Performing minimization step: 1637. Total energy = 1612.9804 kcal/mol (1612.4406 without restraints) Performing minimization step: 1638. Total energy = 1612.1500 kcal/mol (1611.6107 without restraints) Performing minimization step: 1639. Total energy = 1611.3205 kcal/mol (1610.7818 without restraints) Performing minimization step: 1640. Total energy = 1610.4919 kcal/mol (1609.9537 without restraints) Performing minimization step: 1641. Total energy = 1609.6648 kcal/mol (1609.1271 without restraints) Performing minimization step: 1642. Total energy = 1608.8383 kcal/mol (1608.3012 without restraints) Performing minimization step: 1643. Total energy = 1608.0125 kcal/mol (1607.4759 without restraints) Performing minimization step: 1644. Total energy = 1607.1880 kcal/mol (1606.6519 without restraints) Performing minimization step: 1645. Total energy = 1606.3643 kcal/mol (1605.8287 without restraints) Performing minimization step: 1646. Total energy = 1605.5417 kcal/mol (1605.0066 without restraints) Performing minimization step: 1647. Total energy = 1604.7200 kcal/mol (1604.1854 without restraints) Performing minimization step: 1648. Total energy = 1603.8992 kcal/mol (1603.3652 without restraints) Performing minimization step: 1649. Total energy = 1603.0794 kcal/mol (1602.5459 without restraints) Performing minimization step: 1650. Total energy = 1602.2606 kcal/mol (1601.7276 without restraints) Performing minimization step: 1651. Total energy = 1601.4425 kcal/mol (1600.9100 without restraints) Performing minimization step: 1652. Total energy = 1600.6255 kcal/mol (1600.0935 without restraints) Performing minimization step: 1653. Total energy = 1599.8092 kcal/mol (1599.2778 without restraints) Performing minimization step: 1654. Total energy = 1598.9941 kcal/mol (1598.4631 without restraints) Performing minimization step: 1655. Total energy = 1598.1799 kcal/mol (1597.6494 without restraints) Performing minimization step: 1656. Total energy = 1597.3664 kcal/mol (1596.8365 without restraints) Performing minimization step: 1657. Total energy = 1596.5540 kcal/mol (1596.0246 without restraints) Performing minimization step: 1658. Total energy = 1595.7426 kcal/mol (1595.2137 without restraints) Performing minimization step: 1659. Total energy = 1594.9321 kcal/mol (1594.4036 without restraints) Performing minimization step: 1660. Total energy = 1594.1226 kcal/mol (1593.5947 without restraints) Performing minimization step: 1661. Total energy = 1593.3139 kcal/mol (1592.7865 without restraints) Performing minimization step: 1662. Total energy = 1592.5061 kcal/mol (1591.9792 without restraints) Performing minimization step: 1663. Total energy = 1591.6993 kcal/mol (1591.1728 without restraints) Performing minimization step: 1664. Total energy = 1590.8931 kcal/mol (1590.3671 without restraints) Performing minimization step: 1665. Total energy = 1590.0880 kcal/mol (1589.5626 without restraints) Performing minimization step: 1666. Total energy = 1589.2838 kcal/mol (1588.7589 without restraints) Performing minimization step: 1667. Total energy = 1588.4805 kcal/mol (1587.9561 without restraints) Performing minimization step: 1668. Total energy = 1587.6781 kcal/mol (1587.1541 without restraints) Performing minimization step: 1669. Total energy = 1586.8765 kcal/mol (1586.3531 without restraints) Performing minimization step: 1670. Total energy = 1586.0759 kcal/mol (1585.5529 without restraints) Performing minimization step: 1671. Total energy = 1585.2764 kcal/mol (1584.7540 without restraints) Performing minimization step: 1672. Total energy = 1584.4776 kcal/mol (1583.9557 without restraints) Performing minimization step: 1673. Total energy = 1583.6800 kcal/mol (1583.1586 without restraints) Performing minimization step: 1674. Total energy = 1582.8829 kcal/mol (1582.3620 without restraints) Performing minimization step: 1675. Total energy = 1582.0866 kcal/mol (1581.5661 without restraints) Performing minimization step: 1676. Total energy = 1581.2912 kcal/mol (1580.7712 without restraints) Performing minimization step: 1677. Total energy = 1580.4967 kcal/mol (1579.9772 without restraints) Performing minimization step: 1678. Total energy = 1579.7031 kcal/mol (1579.1841 without restraints) Performing minimization step: 1679. Total energy = 1578.9103 kcal/mol (1578.3917 without restraints) Performing minimization step: 1680. Total energy = 1578.1183 kcal/mol (1577.6003 without restraints) Performing minimization step: 1681. Total energy = 1577.3272 kcal/mol (1576.8097 without restraints) Performing minimization step: 1682. Total energy = 1576.5369 kcal/mol (1576.0199 without restraints) Performing minimization step: 1683. Total energy = 1575.7478 kcal/mol (1575.2312 without restraints) Performing minimization step: 1684. Total energy = 1574.9592 kcal/mol (1574.4431 without restraints) Performing minimization step: 1685. Total energy = 1574.1715 kcal/mol (1573.6559 without restraints) Performing minimization step: 1686. Total energy = 1573.3846 kcal/mol (1572.8695 without restraints) Performing minimization step: 1687. Total energy = 1572.5986 kcal/mol (1572.0840 without restraints) Performing minimization step: 1688. Total energy = 1571.8131 kcal/mol (1571.2988 without restraints) Performing minimization step: 1689. Total energy = 1571.0286 kcal/mol (1570.5149 without restraints) Performing minimization step: 1690. Total energy = 1570.2449 kcal/mol (1569.7316 without restraints) Performing minimization step: 1691. Total energy = 1569.4621 kcal/mol (1568.9494 without restraints) Performing minimization step: 1692. Total energy = 1568.6802 kcal/mol (1568.1680 without restraints) Performing minimization step: 1693. Total energy = 1567.8996 kcal/mol (1567.3878 without restraints) Performing minimization step: 1694. Total energy = 1567.1193 kcal/mol (1566.6079 without restraints) Performing minimization step: 1695. Total energy = 1566.3399 kcal/mol (1565.8291 without restraints) Performing minimization step: 1696. Total energy = 1565.5613 kcal/mol (1565.0510 without restraints) Performing minimization step: 1697. Total energy = 1564.7836 kcal/mol (1564.2737 without restraints) Performing minimization step: 1698. Total energy = 1564.0065 kcal/mol (1563.4971 without restraints) Performing minimization step: 1699. Total energy = 1563.2306 kcal/mol (1562.7216 without restraints) Performing minimization step: 1700. Total energy = 1562.4552 kcal/mol (1561.9467 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 1561.6806 kcal/mol (1561.1726 without restraints) Performing minimization step: 1702. Total energy = 1560.9068 kcal/mol (1560.3992 without restraints) Performing minimization step: 1703. Total energy = 1560.1338 kcal/mol (1559.6267 without restraints) Performing minimization step: 1704. Total energy = 1559.3624 kcal/mol (1558.8559 without restraints) Performing minimization step: 1705. Total energy = 1558.5911 kcal/mol (1558.0849 without restraints) Performing minimization step: 1706. Total energy = 1557.8205 kcal/mol (1557.3148 without restraints) Performing minimization step: 1707. Total energy = 1557.0506 kcal/mol (1556.5454 without restraints) Performing minimization step: 1708. Total energy = 1556.2814 kcal/mol (1555.7768 without restraints) Performing minimization step: 1709. Total energy = 1555.5133 kcal/mol (1555.0090 without restraints) Performing minimization step: 1710. Total energy = 1554.7458 kcal/mol (1554.2419 without restraints) Performing minimization step: 1711. Total energy = 1553.9791 kcal/mol (1553.4757 without restraints) Performing minimization step: 1712. Total energy = 1553.2131 kcal/mol (1552.7102 without restraints) Performing minimization step: 1713. Total energy = 1552.4480 kcal/mol (1551.9455 without restraints) Performing minimization step: 1714. Total energy = 1551.6836 kcal/mol (1551.1816 without restraints) Performing minimization step: 1715. Total energy = 1550.9200 kcal/mol (1550.4184 without restraints) Performing minimization step: 1716. Total energy = 1550.1569 kcal/mol (1549.6558 without restraints) Performing minimization step: 1717. Total energy = 1549.3946 kcal/mol (1548.8939 without restraints) Performing minimization step: 1718. Total energy = 1548.6332 kcal/mol (1548.1330 without restraints) Performing minimization step: 1719. Total energy = 1547.8725 kcal/mol (1547.3728 without restraints) Performing minimization step: 1720. Total energy = 1547.1127 kcal/mol (1546.6134 without restraints) Performing minimization step: 1721. Total energy = 1546.3536 kcal/mol (1545.8548 without restraints) Performing minimization step: 1722. Total energy = 1545.5953 kcal/mol (1545.0969 without restraints) Performing minimization step: 1723. Total energy = 1544.8377 kcal/mol (1544.3397 without restraints) Performing minimization step: 1724. Total energy = 1544.0809 kcal/mol (1543.5834 without restraints) Performing minimization step: 1725. Total energy = 1543.3248 kcal/mol (1542.8277 without restraints) Performing minimization step: 1726. Total energy = 1542.5692 kcal/mol (1542.0724 without restraints) Performing minimization step: 1727. Total energy = 1541.8145 kcal/mol (1541.3183 without restraints) Performing minimization step: 1728. Total energy = 1541.0604 kcal/mol (1540.5647 without restraints) Performing minimization step: 1729. Total energy = 1540.3075 kcal/mol (1539.8122 without restraints) Performing minimization step: 1730. Total energy = 1539.5551 kcal/mol (1539.0603 without restraints) Performing minimization step: 1731. Total energy = 1538.8034 kcal/mol (1538.3091 without restraints) Performing minimization step: 1732. Total energy = 1538.0525 kcal/mol (1537.5585 without restraints) Performing minimization step: 1733. Total energy = 1537.3025 kcal/mol (1536.8090 without restraints) Performing minimization step: 1734. Total energy = 1536.5530 kcal/mol (1536.0599 without restraints) Performing minimization step: 1735. Total energy = 1535.8043 kcal/mol (1535.3117 without restraints) Performing minimization step: 1736. Total energy = 1535.0563 kcal/mol (1534.5641 without restraints) Performing minimization step: 1737. Total energy = 1534.3089 kcal/mol (1533.8172 without restraints) Performing minimization step: 1738. Total energy = 1533.5624 kcal/mol (1533.0710 without restraints) Performing minimization step: 1739. Total energy = 1532.8163 kcal/mol (1532.3254 without restraints) Performing minimization step: 1740. Total energy = 1532.0711 kcal/mol (1531.5807 without restraints) Performing minimization step: 1741. Total energy = 1531.3265 kcal/mol (1530.8365 without restraints) Performing minimization step: 1742. Total energy = 1530.5827 kcal/mol (1530.0932 without restraints) Performing minimization step: 1743. Total energy = 1529.8399 kcal/mol (1529.3508 without restraints) Performing minimization step: 1744. Total energy = 1529.0974 kcal/mol (1528.6085 without restraints) Performing minimization step: 1745. Total energy = 1528.3555 kcal/mol (1527.8673 without restraints) Performing minimization step: 1746. Total energy = 1527.6146 kcal/mol (1527.1268 without restraints) Performing minimization step: 1747. Total energy = 1526.8746 kcal/mol (1526.3872 without restraints) Performing minimization step: 1748. Total energy = 1526.1351 kcal/mol (1525.6482 without restraints) Performing minimization step: 1749. Total energy = 1525.3963 kcal/mol (1524.9098 without restraints) Performing minimization step: 1750. Total energy = 1524.6582 kcal/mol (1524.1721 without restraints) Performing minimization step: 1751. Total energy = 1523.9210 kcal/mol (1523.4353 without restraints) Performing minimization step: 1752. Total energy = 1523.1843 kcal/mol (1522.6990 without restraints) Performing minimization step: 1753. Total energy = 1522.4481 kcal/mol (1521.9632 without restraints) Performing minimization step: 1754. Total energy = 1521.7127 kcal/mol (1521.2283 without restraints) Performing minimization step: 1755. Total energy = 1520.9779 kcal/mol (1520.4939 without restraints) Performing minimization step: 1756. Total energy = 1520.2439 kcal/mol (1519.7603 without restraints) Performing minimization step: 1757. Total energy = 1519.5108 kcal/mol (1519.0277 without restraints) Performing minimization step: 1758. Total energy = 1518.7782 kcal/mol (1518.2955 without restraints) Performing minimization step: 1759. Total energy = 1518.0460 kcal/mol (1517.5637 without restraints) Performing minimization step: 1760. Total energy = 1517.3148 kcal/mol (1516.8329 without restraints) Performing minimization step: 1761. Total energy = 1516.5842 kcal/mol (1516.1027 without restraints) Performing minimization step: 1762. Total energy = 1515.8541 kcal/mol (1515.3731 without restraints) Performing minimization step: 1763. Total energy = 1515.1249 kcal/mol (1514.6442 without restraints) Performing minimization step: 1764. Total energy = 1514.3963 kcal/mol (1513.9161 without restraints) Performing minimization step: 1765. Total energy = 1513.6688 kcal/mol (1513.1890 without restraints) Performing minimization step: 1766. Total energy = 1512.9416 kcal/mol (1512.4622 without restraints) Performing minimization step: 1767. Total energy = 1512.2150 kcal/mol (1511.7360 without restraints) Performing minimization step: 1768. Total energy = 1511.4892 kcal/mol (1511.0106 without restraints) Performing minimization step: 1769. Total energy = 1510.7639 kcal/mol (1510.2857 without restraints) Performing minimization step: 1770. Total energy = 1510.0395 kcal/mol (1509.5618 without restraints) Performing minimization step: 1771. Total energy = 1509.3156 kcal/mol (1508.8383 without restraints) Performing minimization step: 1772. Total energy = 1508.5924 kcal/mol (1508.1155 without restraints) Performing minimization step: 1773. Total energy = 1507.8699 kcal/mol (1507.3933 without restraints) Performing minimization step: 1774. Total energy = 1507.1482 kcal/mol (1506.6720 without restraints) Performing minimization step: 1775. Total energy = 1506.4269 kcal/mol (1505.9512 without restraints) Performing minimization step: 1776. Total energy = 1505.7063 kcal/mol (1505.2310 without restraints) Performing minimization step: 1777. Total energy = 1504.9863 kcal/mol (1504.5114 without restraints) Performing minimization step: 1778. Total energy = 1504.2671 kcal/mol (1503.7928 without restraints) Performing minimization step: 1779. Total energy = 1503.5485 kcal/mol (1503.0744 without restraints) Performing minimization step: 1780. Total energy = 1502.8305 kcal/mol (1502.3568 without restraints) Performing minimization step: 1781. Total energy = 1502.1133 kcal/mol (1501.6402 without restraints) Performing minimization step: 1782. Total energy = 1501.3968 kcal/mol (1500.9239 without restraints) Performing minimization step: 1783. Total energy = 1500.6808 kcal/mol (1500.2083 without restraints) Performing minimization step: 1784. Total energy = 1499.9653 kcal/mol (1499.4932 without restraints) Performing minimization step: 1785. Total energy = 1499.2506 kcal/mol (1498.7788 without restraints) Performing minimization step: 1786. Total energy = 1498.5366 kcal/mol (1498.0653 without restraints) Performing minimization step: 1787. Total energy = 1497.8231 kcal/mol (1497.3522 without restraints) Performing minimization step: 1788. Total energy = 1497.1104 kcal/mol (1496.6400 without restraints) Performing minimization step: 1789. Total energy = 1496.3983 kcal/mol (1495.9282 without restraints) Performing minimization step: 1790. Total energy = 1495.6867 kcal/mol (1495.2170 without restraints) Performing minimization step: 1791. Total energy = 1494.9755 kcal/mol (1494.5062 without restraints) Performing minimization step: 1792. Total energy = 1494.2652 kcal/mol (1493.7963 without restraints) Performing minimization step: 1793. Total energy = 1493.5556 kcal/mol (1493.0872 without restraints) Performing minimization step: 1794. Total energy = 1492.8467 kcal/mol (1492.3785 without restraints) Performing minimization step: 1795. Total energy = 1492.1383 kcal/mol (1491.6705 without restraints) Performing minimization step: 1796. Total energy = 1491.4307 kcal/mol (1490.9633 without restraints) Performing minimization step: 1797. Total energy = 1490.7235 kcal/mol (1490.2566 without restraints) Performing minimization step: 1798. Total energy = 1490.0170 kcal/mol (1489.5504 without restraints) Performing minimization step: 1799. Total energy = 1489.3113 kcal/mol (1488.8451 without restraints) Performing minimization step: 1800. Total energy = 1488.6059 kcal/mol (1488.1402 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 1487.9013 kcal/mol (1487.4359 without restraints) Performing minimization step: 1802. Total energy = 1487.1976 kcal/mol (1486.7326 without restraints) Performing minimization step: 1803. Total energy = 1486.4945 kcal/mol (1486.0299 without restraints) Performing minimization step: 1804. Total energy = 1485.7917 kcal/mol (1485.3275 without restraints) Performing minimization step: 1805. Total energy = 1485.0895 kcal/mol (1484.6257 without restraints) Performing minimization step: 1806. Total energy = 1484.3880 kcal/mol (1483.9245 without restraints) Performing minimization step: 1807. Total energy = 1483.6870 kcal/mol (1483.2240 without restraints) Performing minimization step: 1808. Total energy = 1482.9867 kcal/mol (1482.5240 without restraints) Performing minimization step: 1809. Total energy = 1482.2870 kcal/mol (1481.8247 without restraints) Performing minimization step: 1810. Total energy = 1481.5881 kcal/mol (1481.1262 without restraints) Performing minimization step: 1811. Total energy = 1480.8897 kcal/mol (1480.4281 without restraints) Performing minimization step: 1812. Total energy = 1480.1918 kcal/mol (1479.7307 without restraints) Performing minimization step: 1813. Total energy = 1479.4946 kcal/mol (1479.0338 without restraints) Performing minimization step: 1814. Total energy = 1478.7980 kcal/mol (1478.3377 without restraints) Performing minimization step: 1815. Total energy = 1478.1024 kcal/mol (1477.6424 without restraints) Performing minimization step: 1816. Total energy = 1477.4070 kcal/mol (1476.9474 without restraints) Performing minimization step: 1817. Total energy = 1476.7127 kcal/mol (1476.2533 without restraints) Performing minimization step: 1818. Total energy = 1476.0184 kcal/mol (1475.5595 without restraints) Performing minimization step: 1819. Total energy = 1475.3248 kcal/mol (1474.8663 without restraints) Performing minimization step: 1820. Total energy = 1474.6320 kcal/mol (1474.1739 without restraints) Performing minimization step: 1821. Total energy = 1473.9396 kcal/mol (1473.4819 without restraints) Performing minimization step: 1822. Total energy = 1473.2479 kcal/mol (1472.7905 without restraints) Performing minimization step: 1823. Total energy = 1472.5567 kcal/mol (1472.0997 without restraints) Performing minimization step: 1824. Total energy = 1471.8662 kcal/mol (1471.4096 without restraints) Performing minimization step: 1825. Total energy = 1471.1763 kcal/mol (1470.7200 without restraints) Performing minimization step: 1826. Total energy = 1470.4870 kcal/mol (1470.0311 without restraints) Performing minimization step: 1827. Total energy = 1469.7983 kcal/mol (1469.3428 without restraints) Performing minimization step: 1828. Total energy = 1469.1102 kcal/mol (1468.6550 without restraints) Performing minimization step: 1829. Total energy = 1468.4227 kcal/mol (1467.9679 without restraints) Performing minimization step: 1830. Total energy = 1467.7360 kcal/mol (1467.2815 without restraints) Performing minimization step: 1831. Total energy = 1467.0495 kcal/mol (1466.5953 without restraints) Performing minimization step: 1832. Total energy = 1466.3636 kcal/mol (1465.9099 without restraints) Performing minimization step: 1833. Total energy = 1465.6785 kcal/mol (1465.2252 without restraints) Performing minimization step: 1834. Total energy = 1464.9941 kcal/mol (1464.5413 without restraints) Performing minimization step: 1835. Total energy = 1464.3103 kcal/mol (1463.8577 without restraints) Performing minimization step: 1836. Total energy = 1463.6270 kcal/mol (1463.1747 without restraints) Performing minimization step: 1837. Total energy = 1462.9444 kcal/mol (1462.4926 without restraints) Performing minimization step: 1838. Total energy = 1462.2623 kcal/mol (1461.8108 without restraints) Performing minimization step: 1839. Total energy = 1461.5808 kcal/mol (1461.1296 without restraints) Performing minimization step: 1840. Total energy = 1460.8998 kcal/mol (1460.4490 without restraints) Performing minimization step: 1841. Total energy = 1460.2195 kcal/mol (1459.7691 without restraints) Performing minimization step: 1842. Total energy = 1459.5398 kcal/mol (1459.0897 without restraints) Performing minimization step: 1843. Total energy = 1458.8606 kcal/mol (1458.4109 without restraints) Performing minimization step: 1844. Total energy = 1458.1820 kcal/mol (1457.7327 without restraints) Performing minimization step: 1845. Total energy = 1457.5041 kcal/mol (1457.0551 without restraints) Performing minimization step: 1846. Total energy = 1456.8268 kcal/mol (1456.3781 without restraints) Performing minimization step: 1847. Total energy = 1456.1499 kcal/mol (1455.7016 without restraints) Performing minimization step: 1848. Total energy = 1455.4739 kcal/mol (1455.0260 without restraints) Performing minimization step: 1849. Total energy = 1454.7983 kcal/mol (1454.3507 without restraints) Performing minimization step: 1850. Total energy = 1454.1232 kcal/mol (1453.6760 without restraints) Performing minimization step: 1851. Total energy = 1453.4487 kcal/mol (1453.0019 without restraints) Performing minimization step: 1852. Total energy = 1452.7749 kcal/mol (1452.3285 without restraints) Performing minimization step: 1853. Total energy = 1452.1017 kcal/mol (1451.6556 without restraints) Performing minimization step: 1854. Total energy = 1451.4290 kcal/mol (1450.9833 without restraints) Performing minimization step: 1855. Total energy = 1450.7572 kcal/mol (1450.3118 without restraints) Performing minimization step: 1856. Total energy = 1450.0859 kcal/mol (1449.6408 without restraints) Performing minimization step: 1857. Total energy = 1449.4150 kcal/mol (1448.9703 without restraints) Performing minimization step: 1858. Total energy = 1448.7449 kcal/mol (1448.3006 without restraints) Performing minimization step: 1859. Total energy = 1448.0753 kcal/mol (1447.6313 without restraints) Performing minimization step: 1860. Total energy = 1447.4061 kcal/mol (1446.9625 without restraints) Performing minimization step: 1861. Total energy = 1446.7376 kcal/mol (1446.2943 without restraints) Performing minimization step: 1862. Total energy = 1446.0697 kcal/mol (1445.6267 without restraints) Performing minimization step: 1863. Total energy = 1445.4023 kcal/mol (1444.9597 without restraints) Performing minimization step: 1864. Total energy = 1444.7355 kcal/mol (1444.2933 without restraints) Performing minimization step: 1865. Total energy = 1444.0694 kcal/mol (1443.6275 without restraints) Performing minimization step: 1866. Total energy = 1443.4038 kcal/mol (1442.9622 without restraints) Performing minimization step: 1867. Total energy = 1442.7387 kcal/mol (1442.2974 without restraints) Performing minimization step: 1868. Total energy = 1442.0742 kcal/mol (1441.6333 without restraints) Performing minimization step: 1869. Total energy = 1441.4104 kcal/mol (1440.9699 without restraints) Performing minimization step: 1870. Total energy = 1440.7472 kcal/mol (1440.3071 without restraints) Performing minimization step: 1871. Total energy = 1440.0845 kcal/mol (1439.6448 without restraints) Performing minimization step: 1872. Total energy = 1439.4226 kcal/mol (1438.9831 without restraints) Performing minimization step: 1873. Total energy = 1438.7611 kcal/mol (1438.3219 without restraints) Performing minimization step: 1874. Total energy = 1438.1004 kcal/mol (1437.6616 without restraints) Performing minimization step: 1875. Total energy = 1437.4401 kcal/mol (1437.0016 without restraints) Performing minimization step: 1876. Total energy = 1436.7803 kcal/mol (1436.3422 without restraints) Performing minimization step: 1877. Total energy = 1436.1212 kcal/mol (1435.6834 without restraints) Performing minimization step: 1878. Total energy = 1435.4626 kcal/mol (1435.0252 without restraints) Performing minimization step: 1879. Total energy = 1434.8048 kcal/mol (1434.3678 without restraints) Performing minimization step: 1880. Total energy = 1434.1474 kcal/mol (1433.7107 without restraints) Performing minimization step: 1881. Total energy = 1433.4906 kcal/mol (1433.0542 without restraints) Performing minimization step: 1882. Total energy = 1432.8343 kcal/mol (1432.3983 without restraints) Performing minimization step: 1883. Total energy = 1432.1787 kcal/mol (1431.7430 without restraints) Performing minimization step: 1884. Total energy = 1431.5237 kcal/mol (1431.0883 without restraints) Performing minimization step: 1885. Total energy = 1430.8693 kcal/mol (1430.4342 without restraints) Performing minimization step: 1886. Total energy = 1430.2154 kcal/mol (1429.7807 without restraints) Performing minimization step: 1887. Total energy = 1429.5623 kcal/mol (1429.1279 without restraints) Performing minimization step: 1888. Total energy = 1428.9096 kcal/mol (1428.4755 without restraints) Performing minimization step: 1889. Total energy = 1428.2574 kcal/mol (1427.8237 without restraints) Performing minimization step: 1890. Total energy = 1427.6059 kcal/mol (1427.1725 without restraints) Performing minimization step: 1891. Total energy = 1426.9549 kcal/mol (1426.5219 without restraints) Performing minimization step: 1892. Total energy = 1426.3047 kcal/mol (1425.8720 without restraints) Performing minimization step: 1893. Total energy = 1425.6549 kcal/mol (1425.2226 without restraints) Performing minimization step: 1894. Total energy = 1425.0060 kcal/mol (1424.5740 without restraints) Performing minimization step: 1895. Total energy = 1424.3574 kcal/mol (1423.9257 without restraints) Performing minimization step: 1896. Total energy = 1423.7096 kcal/mol (1423.2782 without restraints) Performing minimization step: 1897. Total energy = 1423.0621 kcal/mol (1422.6311 without restraints) Performing minimization step: 1898. Total energy = 1422.4154 kcal/mol (1421.9847 without restraints) Performing minimization step: 1899. Total energy = 1421.7691 kcal/mol (1421.3388 without restraints) Performing minimization step: 1900. Total energy = 1421.1235 kcal/mol (1420.6934 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 1420.4783 kcal/mol (1420.0486 without restraints) Performing minimization step: 1902. Total energy = 1419.8338 kcal/mol (1419.4044 without restraints) Performing minimization step: 1903. Total energy = 1419.1899 kcal/mol (1418.7608 without restraints) Performing minimization step: 1904. Total energy = 1418.5465 kcal/mol (1418.1178 without restraints) Performing minimization step: 1905. Total energy = 1417.9037 kcal/mol (1417.4753 without restraints) Performing minimization step: 1906. Total energy = 1417.2617 kcal/mol (1416.8336 without restraints) Performing minimization step: 1907. Total energy = 1416.6201 kcal/mol (1416.1923 without restraints) Performing minimization step: 1908. Total energy = 1415.9790 kcal/mol (1415.5516 without restraints) Performing minimization step: 1909. Total energy = 1415.3385 kcal/mol (1414.9114 without restraints) Performing minimization step: 1910. Total energy = 1414.6984 kcal/mol (1414.2717 without restraints) Performing minimization step: 1911. Total energy = 1414.0592 kcal/mol (1413.6327 without restraints) Performing minimization step: 1912. Total energy = 1413.4203 kcal/mol (1412.9941 without restraints) Performing minimization step: 1913. Total energy = 1412.7821 kcal/mol (1412.3563 without restraints) Performing minimization step: 1914. Total energy = 1412.1446 kcal/mol (1411.7191 without restraints) Performing minimization step: 1915. Total energy = 1411.5076 kcal/mol (1411.0825 without restraints) Performing minimization step: 1916. Total energy = 1410.8713 kcal/mol (1410.4464 without restraints) Performing minimization step: 1917. Total energy = 1410.2354 kcal/mol (1409.8109 without restraints) Performing minimization step: 1918. Total energy = 1409.6002 kcal/mol (1409.1760 without restraints) Performing minimization step: 1919. Total energy = 1408.9662 kcal/mol (1408.5423 without restraints) Performing minimization step: 1920. Total energy = 1408.3322 kcal/mol (1407.9086 without restraints) Performing minimization step: 1921. Total energy = 1407.6987 kcal/mol (1407.2755 without restraints) Performing minimization step: 1922. Total energy = 1407.0659 kcal/mol (1406.6429 without restraints) Performing minimization step: 1923. Total energy = 1406.4336 kcal/mol (1406.0110 without restraints) Performing minimization step: 1924. Total energy = 1405.8019 kcal/mol (1405.3796 without restraints) Performing minimization step: 1925. Total energy = 1405.1708 kcal/mol (1404.7488 without restraints) Performing minimization step: 1926. Total energy = 1404.5403 kcal/mol (1404.1186 without restraints) Performing minimization step: 1927. Total energy = 1403.9104 kcal/mol (1403.4890 without restraints) Performing minimization step: 1928. Total energy = 1403.2808 kcal/mol (1402.8598 without restraints) Performing minimization step: 1929. Total energy = 1402.6521 kcal/mol (1402.2313 without restraints) Performing minimization step: 1930. Total energy = 1402.0238 kcal/mol (1401.6034 without restraints) Performing minimization step: 1931. Total energy = 1401.3962 kcal/mol (1400.9761 without restraints) Performing minimization step: 1932. Total energy = 1400.7695 kcal/mol (1400.3497 without restraints) Performing minimization step: 1933. Total energy = 1400.1434 kcal/mol (1399.7239 without restraints) Performing minimization step: 1934. Total energy = 1399.5175 kcal/mol (1399.0984 without restraints) Performing minimization step: 1935. Total energy = 1398.8923 kcal/mol (1398.4735 without restraints) Performing minimization step: 1936. Total energy = 1398.2677 kcal/mol (1397.8493 without restraints) Performing minimization step: 1937. Total energy = 1397.6440 kcal/mol (1397.2259 without restraints) Performing minimization step: 1938. Total energy = 1397.0208 kcal/mol (1396.6029 without restraints) Performing minimization step: 1939. Total energy = 1396.3981 kcal/mol (1395.9805 without restraints) Performing minimization step: 1940. Total energy = 1395.7756 kcal/mol (1395.3583 without restraints) Performing minimization step: 1941. Total energy = 1395.1537 kcal/mol (1394.7367 without restraints) Performing minimization step: 1942. Total energy = 1394.5325 kcal/mol (1394.1158 without restraints) Performing minimization step: 1943. Total energy = 1393.9119 kcal/mol (1393.4956 without restraints) Performing minimization step: 1944. Total energy = 1393.2918 kcal/mol (1392.8756 without restraints) Performing minimization step: 1945. Total energy = 1392.6723 kcal/mol (1392.2565 without restraints) Performing minimization step: 1946. Total energy = 1392.0535 kcal/mol (1391.6380 without restraints) Performing minimization step: 1947. Total energy = 1391.4352 kcal/mol (1391.0201 without restraints) Performing minimization step: 1948. Total energy = 1390.8180 kcal/mol (1390.4032 without restraints) Performing minimization step: 1949. Total energy = 1390.2010 kcal/mol (1389.7864 without restraints) Performing minimization step: 1950. Total energy = 1389.5847 kcal/mol (1389.1704 without restraints) Performing minimization step: 1951. Total energy = 1388.9688 kcal/mol (1388.5549 without restraints) Performing minimization step: 1952. Total energy = 1388.3537 kcal/mol (1387.9401 without restraints) Performing minimization step: 1953. Total energy = 1387.7389 kcal/mol (1387.3256 without restraints) Performing minimization step: 1954. Total energy = 1387.1250 kcal/mol (1386.7120 without restraints) Performing minimization step: 1955. Total energy = 1386.5115 kcal/mol (1386.0988 without restraints) Performing minimization step: 1956. Total energy = 1385.8985 kcal/mol (1385.4861 without restraints) Performing minimization step: 1957. Total energy = 1385.2862 kcal/mol (1384.8741 without restraints) Performing minimization step: 1958. Total energy = 1384.6744 kcal/mol (1384.2626 without restraints) Performing minimization step: 1959. Total energy = 1384.0633 kcal/mol (1383.6519 without restraints) Performing minimization step: 1960. Total energy = 1383.4531 kcal/mol (1383.0419 without restraints) Performing minimization step: 1961. Total energy = 1382.8429 kcal/mol (1382.4320 without restraints) Performing minimization step: 1962. Total energy = 1382.2334 kcal/mol (1381.8227 without restraints) Performing minimization step: 1963. Total energy = 1381.6244 kcal/mol (1381.2141 without restraints) Performing minimization step: 1964. Total energy = 1381.0164 kcal/mol (1380.6064 without restraints) Performing minimization step: 1965. Total energy = 1380.4087 kcal/mol (1379.9990 without restraints) Performing minimization step: 1966. Total energy = 1379.8016 kcal/mol (1379.3922 without restraints) Performing minimization step: 1967. Total energy = 1379.1948 kcal/mol (1378.7856 without restraints) Performing minimization step: 1968. Total energy = 1378.5888 kcal/mol (1378.1800 without restraints) Performing minimization step: 1969. Total energy = 1377.9835 kcal/mol (1377.5749 without restraints) Performing minimization step: 1970. Total energy = 1377.3787 kcal/mol (1376.9705 without restraints) Performing minimization step: 1971. Total energy = 1376.7745 kcal/mol (1376.3666 without restraints) Performing minimization step: 1972. Total energy = 1376.1712 kcal/mol (1375.7636 without restraints) Performing minimization step: 1973. Total energy = 1375.5682 kcal/mol (1375.1609 without restraints) Performing minimization step: 1974. Total energy = 1374.9658 kcal/mol (1374.5588 without restraints) Performing minimization step: 1975. Total energy = 1374.3642 kcal/mol (1373.9575 without restraints) Performing minimization step: 1976. Total energy = 1373.7630 kcal/mol (1373.3565 without restraints) Performing minimization step: 1977. Total energy = 1373.1626 kcal/mol (1372.7566 without restraints) Performing minimization step: 1978. Total energy = 1372.5629 kcal/mol (1372.1570 without restraints) Performing minimization step: 1979. Total energy = 1371.9634 kcal/mol (1371.5579 without restraints) Performing minimization step: 1980. Total energy = 1371.3644 kcal/mol (1370.9591 without restraints) Performing minimization step: 1981. Total energy = 1370.7660 kcal/mol (1370.3610 without restraints) Performing minimization step: 1982. Total energy = 1370.1683 kcal/mol (1369.7636 without restraints) Performing minimization step: 1983. Total energy = 1369.5712 kcal/mol (1369.1667 without restraints) Performing minimization step: 1984. Total energy = 1368.9746 kcal/mol (1368.5705 without restraints) Performing minimization step: 1985. Total energy = 1368.3786 kcal/mol (1367.9748 without restraints) Performing minimization step: 1986. Total energy = 1367.7833 kcal/mol (1367.3797 without restraints) Performing minimization step: 1987. Total energy = 1367.1885 kcal/mol (1366.7854 without restraints) Performing minimization step: 1988. Total energy = 1366.5944 kcal/mol (1366.1915 without restraints) Performing minimization step: 1989. Total energy = 1366.0008 kcal/mol (1365.5981 without restraints) Performing minimization step: 1990. Total energy = 1365.4077 kcal/mol (1365.0054 without restraints) Performing minimization step: 1991. Total energy = 1364.8153 kcal/mol (1364.4132 without restraints) Performing minimization step: 1992. Total energy = 1364.2237 kcal/mol (1363.8220 without restraints) Performing minimization step: 1993. Total energy = 1363.6322 kcal/mol (1363.2307 without restraints) Performing minimization step: 1994. Total energy = 1363.0415 kcal/mol (1362.6403 without restraints) Performing minimization step: 1995. Total energy = 1362.4516 kcal/mol (1362.0506 without restraints) Performing minimization step: 1996. Total energy = 1361.8621 kcal/mol (1361.4614 without restraints) Performing minimization step: 1997. Total energy = 1361.2731 kcal/mol (1360.8728 without restraints) Performing minimization step: 1998. Total energy = 1360.6848 kcal/mol (1360.2847 without restraints) Performing minimization step: 1999. Total energy = 1360.0970 kcal/mol (1359.6971 without restraints) Performing minimization step: 2000. Total energy = 1359.5098 kcal/mol (1359.1104 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 1358.9233 kcal/mol (1358.5240 without restraints) Performing minimization step: 2002. Total energy = 1358.3372 kcal/mol (1357.9382 without restraints) Performing minimization step: 2003. Total energy = 1357.7517 kcal/mol (1357.3530 without restraints) Performing minimization step: 2004. Total energy = 1357.1666 kcal/mol (1356.7682 without restraints) Performing minimization step: 2005. Total energy = 1356.5823 kcal/mol (1356.1841 without restraints) Performing minimization step: 2006. Total energy = 1355.9985 kcal/mol (1355.6007 without restraints) Performing minimization step: 2007. Total energy = 1355.4154 kcal/mol (1355.0178 without restraints) Performing minimization step: 2008. Total energy = 1354.8328 kcal/mol (1354.4355 without restraints) Performing minimization step: 2009. Total energy = 1354.2508 kcal/mol (1353.8537 without restraints) Performing minimization step: 2010. Total energy = 1353.6693 kcal/mol (1353.2726 without restraints) Performing minimization step: 2011. Total energy = 1353.0885 kcal/mol (1352.6920 without restraints) Performing minimization step: 2012. Total energy = 1352.5082 kcal/mol (1352.1120 without restraints) Performing minimization step: 2013. Total energy = 1351.9285 kcal/mol (1351.5326 without restraints) Performing minimization step: 2014. Total energy = 1351.3496 kcal/mol (1350.9540 without restraints) Performing minimization step: 2015. Total energy = 1350.7711 kcal/mol (1350.3757 without restraints) Performing minimization step: 2016. Total energy = 1350.1931 kcal/mol (1349.7980 without restraints) Performing minimization step: 2017. Total energy = 1349.6157 kcal/mol (1349.2209 without restraints) Performing minimization step: 2018. Total energy = 1349.0389 kcal/mol (1348.6443 without restraints) Performing minimization step: 2019. Total energy = 1348.4625 kcal/mol (1348.0681 without restraints) Performing minimization step: 2020. Total energy = 1347.8867 kcal/mol (1347.4927 without restraints) Performing minimization step: 2021. Total energy = 1347.3116 kcal/mol (1346.9179 without restraints) Performing minimization step: 2022. Total energy = 1346.7371 kcal/mol (1346.3436 without restraints) Performing minimization step: 2023. Total energy = 1346.1631 kcal/mol (1345.7699 without restraints) Performing minimization step: 2024. Total energy = 1345.5898 kcal/mol (1345.1968 without restraints) Performing minimization step: 2025. Total energy = 1345.0172 kcal/mol (1344.6245 without restraints) Performing minimization step: 2026. Total energy = 1344.4451 kcal/mol (1344.0527 without restraints) Performing minimization step: 2027. Total energy = 1343.8736 kcal/mol (1343.4815 without restraints) Performing minimization step: 2028. Total energy = 1343.3029 kcal/mol (1342.9111 without restraints) Performing minimization step: 2029. Total energy = 1342.7324 kcal/mol (1342.3408 without restraints) Performing minimization step: 2030. Total energy = 1342.1624 kcal/mol (1341.7711 without restraints) Performing minimization step: 2031. Total energy = 1341.5930 kcal/mol (1341.2020 without restraints) Performing minimization step: 2032. Total energy = 1341.0242 kcal/mol (1340.6334 without restraints) Performing minimization step: 2033. Total energy = 1340.4560 kcal/mol (1340.0654 without restraints) Performing minimization step: 2034. Total energy = 1339.8885 kcal/mol (1339.4983 without restraints) Performing minimization step: 2035. Total energy = 1339.3216 kcal/mol (1338.9316 without restraints) Performing minimization step: 2036. Total energy = 1338.7550 kcal/mol (1338.3653 without restraints) Performing minimization step: 2037. Total energy = 1338.1890 kcal/mol (1337.7995 without restraints) Performing minimization step: 2038. Total energy = 1337.6236 kcal/mol (1337.2344 without restraints) Performing minimization step: 2039. Total energy = 1337.0587 kcal/mol (1336.6698 without restraints) Performing minimization step: 2040. Total energy = 1336.4944 kcal/mol (1336.1058 without restraints) Performing minimization step: 2041. Total energy = 1335.9307 kcal/mol (1335.5423 without restraints) Performing minimization step: 2042. Total energy = 1335.3674 kcal/mol (1334.9792 without restraints) Performing minimization step: 2043. Total energy = 1334.8048 kcal/mol (1334.4169 without restraints) Performing minimization step: 2044. Total energy = 1334.2428 kcal/mol (1333.8552 without restraints) Performing minimization step: 2045. Total energy = 1333.6813 kcal/mol (1333.2939 without restraints) Performing minimization step: 2046. Total energy = 1333.1204 kcal/mol (1332.7333 without restraints) Performing minimization step: 2047. Total energy = 1332.5599 kcal/mol (1332.1730 without restraints) Performing minimization step: 2048. Total energy = 1331.9999 kcal/mol (1331.6133 without restraints) Performing minimization step: 2049. Total energy = 1331.4406 kcal/mol (1331.0543 without restraints) Performing minimization step: 2050. Total energy = 1330.8819 kcal/mol (1330.4959 without restraints) Performing minimization step: 2051. Total energy = 1330.3238 kcal/mol (1329.9380 without restraints) Performing minimization step: 2052. Total energy = 1329.7662 kcal/mol (1329.3807 without restraints) Performing minimization step: 2053. Total energy = 1329.2092 kcal/mol (1328.8239 without restraints) Performing minimization step: 2054. Total energy = 1328.6527 kcal/mol (1328.2677 without restraints) Performing minimization step: 2055. Total energy = 1328.0968 kcal/mol (1327.7120 without restraints) Performing minimization step: 2056. Total energy = 1327.5415 kcal/mol (1327.1569 without restraints) Performing minimization step: 2057. Total energy = 1326.9871 kcal/mol (1326.6028 without restraints) Performing minimization step: 2058. Total energy = 1326.4328 kcal/mol (1326.0488 without restraints) Performing minimization step: 2059. Total energy = 1325.8791 kcal/mol (1325.4954 without restraints) Performing minimization step: 2060. Total energy = 1325.3260 kcal/mol (1324.9425 without restraints) Performing minimization step: 2061. Total energy = 1324.7734 kcal/mol (1324.3901 without restraints) Performing minimization step: 2062. Total energy = 1324.2213 kcal/mol (1323.8383 without restraints) Performing minimization step: 2063. Total energy = 1323.6698 kcal/mol (1323.2870 without restraints) Performing minimization step: 2064. Total energy = 1323.1188 kcal/mol (1322.7363 without restraints) Performing minimization step: 2065. Total energy = 1322.5684 kcal/mol (1322.1861 without restraints) Performing minimization step: 2066. Total energy = 1322.0185 kcal/mol (1321.6365 without restraints) Performing minimization step: 2067. Total energy = 1321.4692 kcal/mol (1321.0875 without restraints) Performing minimization step: 2068. Total energy = 1320.9205 kcal/mol (1320.5390 without restraints) Performing minimization step: 2069. Total energy = 1320.3721 kcal/mol (1319.9909 without restraints) Performing minimization step: 2070. Total energy = 1319.8244 kcal/mol (1319.4434 without restraints) Performing minimization step: 2071. Total energy = 1319.2775 kcal/mol (1318.8967 without restraints) Performing minimization step: 2072. Total energy = 1318.7309 kcal/mol (1318.3504 without restraints) Performing minimization step: 2073. Total energy = 1318.1852 kcal/mol (1317.8050 without restraints) Performing minimization step: 2074. Total energy = 1317.6397 kcal/mol (1317.2598 without restraints) Performing minimization step: 2075. Total energy = 1317.0949 kcal/mol (1316.7151 without restraints) Performing minimization step: 2076. Total energy = 1316.5506 kcal/mol (1316.1711 without restraints) Performing minimization step: 2077. Total energy = 1316.0067 kcal/mol (1315.6274 without restraints) Performing minimization step: 2078. Total energy = 1315.4633 kcal/mol (1315.0843 without restraints) Performing minimization step: 2079. Total energy = 1314.9205 kcal/mol (1314.5417 without restraints) Performing minimization step: 2080. Total energy = 1314.3782 kcal/mol (1313.9996 without restraints) Performing minimization step: 2081. Total energy = 1313.8364 kcal/mol (1313.4581 without restraints) Performing minimization step: 2082. Total energy = 1313.2952 kcal/mol (1312.9171 without restraints) Performing minimization step: 2083. Total energy = 1312.7545 kcal/mol (1312.3767 without restraints) Performing minimization step: 2084. Total energy = 1312.2143 kcal/mol (1311.8367 without restraints) Performing minimization step: 2085. Total energy = 1311.6747 kcal/mol (1311.2973 without restraints) Performing minimization step: 2086. Total energy = 1311.1356 kcal/mol (1310.7585 without restraints) Performing minimization step: 2087. Total energy = 1310.5970 kcal/mol (1310.2202 without restraints) Performing minimization step: 2088. Total energy = 1310.0590 kcal/mol (1309.6824 without restraints) Performing minimization step: 2089. Total energy = 1309.5215 kcal/mol (1309.1451 without restraints) Performing minimization step: 2090. Total energy = 1308.9845 kcal/mol (1308.6083 without restraints) Performing minimization step: 2091. Total energy = 1308.4480 kcal/mol (1308.0721 without restraints) Performing minimization step: 2092. Total energy = 1307.9120 kcal/mol (1307.5364 without restraints) Performing minimization step: 2093. Total energy = 1307.3766 kcal/mol (1307.0012 without restraints) Performing minimization step: 2094. Total energy = 1306.8417 kcal/mol (1306.4665 without restraints) Performing minimization step: 2095. Total energy = 1306.3073 kcal/mol (1305.9323 without restraints) Performing minimization step: 2096. Total energy = 1305.7734 kcal/mol (1305.3987 without restraints) Performing minimization step: 2097. Total energy = 1305.2401 kcal/mol (1304.8656 without restraints) Performing minimization step: 2098. Total energy = 1304.7073 kcal/mol (1304.3330 without restraints) Performing minimization step: 2099. Total energy = 1304.1750 kcal/mol (1303.8010 without restraints) Performing minimization step: 2100. Total energy = 1303.6432 kcal/mol (1303.2694 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 1303.1121 kcal/mol (1302.7386 without restraints) Performing minimization step: 2102. Total energy = 1302.5814 kcal/mol (1302.2080 without restraints) Performing minimization step: 2103. Total energy = 1302.0511 kcal/mol (1301.6780 without restraints) Performing minimization step: 2104. Total energy = 1301.5214 kcal/mol (1301.1485 without restraints) Performing minimization step: 2105. Total energy = 1300.9921 kcal/mol (1300.6195 without restraints) Performing minimization step: 2106. Total energy = 1300.4633 kcal/mol (1300.0908 without restraints) Performing minimization step: 2107. Total energy = 1299.9352 kcal/mol (1299.5631 without restraints) Performing minimization step: 2108. Total energy = 1299.4075 kcal/mol (1299.0356 without restraints) Performing minimization step: 2109. Total energy = 1298.8801 kcal/mol (1298.5084 without restraints) Performing minimization step: 2110. Total energy = 1298.3534 kcal/mol (1297.9820 without restraints) Performing minimization step: 2111. Total energy = 1297.8273 kcal/mol (1297.4561 without restraints) Performing minimization step: 2112. Total energy = 1297.3017 kcal/mol (1296.9307 without restraints) Performing minimization step: 2113. Total energy = 1296.7766 kcal/mol (1296.4058 without restraints) Performing minimization step: 2114. Total energy = 1296.2520 kcal/mol (1295.8815 without restraints) Performing minimization step: 2115. Total energy = 1295.7280 kcal/mol (1295.3578 without restraints) Performing minimization step: 2116. Total energy = 1295.2046 kcal/mol (1294.8345 without restraints) Performing minimization step: 2117. Total energy = 1294.6815 kcal/mol (1294.3116 without restraints) Performing minimization step: 2118. Total energy = 1294.1586 kcal/mol (1293.7890 without restraints) Performing minimization step: 2119. Total energy = 1293.6365 kcal/mol (1293.2670 without restraints) Performing minimization step: 2120. Total energy = 1293.1148 kcal/mol (1292.7456 without restraints) Performing minimization step: 2121. Total energy = 1292.5937 kcal/mol (1292.2247 without restraints) Performing minimization step: 2122. Total energy = 1292.0732 kcal/mol (1291.7044 without restraints) Performing minimization step: 2123. Total energy = 1291.5535 kcal/mol (1291.1850 without restraints) Performing minimization step: 2124. Total energy = 1291.0338 kcal/mol (1290.6655 without restraints) Performing minimization step: 2125. Total energy = 1290.5147 kcal/mol (1290.1466 without restraints) Performing minimization step: 2126. Total energy = 1289.9960 kcal/mol (1289.6281 without restraints) Performing minimization step: 2127. Total energy = 1289.4779 kcal/mol (1289.1104 without restraints) Performing minimization step: 2128. Total energy = 1288.9608 kcal/mol (1288.5934 without restraints) Performing minimization step: 2129. Total energy = 1288.4436 kcal/mol (1288.0764 without restraints) Performing minimization step: 2130. Total energy = 1287.9269 kcal/mol (1287.5599 without restraints) Performing minimization step: 2131. Total energy = 1287.4109 kcal/mol (1287.0441 without restraints) Performing minimization step: 2132. Total energy = 1286.8951 kcal/mol (1286.5286 without restraints) Performing minimization step: 2133. Total energy = 1286.3801 kcal/mol (1286.0138 without restraints) Performing minimization step: 2134. Total energy = 1285.8656 kcal/mol (1285.4996 without restraints) Performing minimization step: 2135. Total energy = 1285.3515 kcal/mol (1284.9856 without restraints) Performing minimization step: 2136. Total energy = 1284.8377 kcal/mol (1284.4720 without restraints) Performing minimization step: 2137. Total energy = 1284.3244 kcal/mol (1283.9589 without restraints) Performing minimization step: 2138. Total energy = 1283.8116 kcal/mol (1283.4463 without restraints) Performing minimization step: 2139. Total energy = 1283.2992 kcal/mol (1282.9342 without restraints) Performing minimization step: 2140. Total energy = 1282.7873 kcal/mol (1282.4225 without restraints) Performing minimization step: 2141. Total energy = 1282.2761 kcal/mol (1281.9115 without restraints) Performing minimization step: 2142. Total energy = 1281.7652 kcal/mol (1281.4008 without restraints) Performing minimization step: 2143. Total energy = 1281.2547 kcal/mol (1280.8903 without restraints) Performing minimization step: 2144. Total energy = 1280.7444 kcal/mol (1280.3804 without restraints) Performing minimization step: 2145. Total energy = 1280.2349 kcal/mol (1279.8711 without restraints) Performing minimization step: 2146. Total energy = 1279.7258 kcal/mol (1279.3623 without restraints) Performing minimization step: 2147. Total energy = 1279.2173 kcal/mol (1278.8540 without restraints) Performing minimization step: 2148. Total energy = 1278.7093 kcal/mol (1278.3462 without restraints) Performing minimization step: 2149. Total energy = 1278.2017 kcal/mol (1277.8388 without restraints) Performing minimization step: 2150. Total energy = 1277.6946 kcal/mol (1277.3319 without restraints) Performing minimization step: 2151. Total energy = 1277.1880 kcal/mol (1276.8255 without restraints) Performing minimization step: 2152. Total energy = 1276.6818 kcal/mol (1276.3195 without restraints) Performing minimization step: 2153. Total energy = 1276.1761 kcal/mol (1275.8141 without restraints) Performing minimization step: 2154. Total energy = 1275.6709 kcal/mol (1275.3090 without restraints) Performing minimization step: 2155. Total energy = 1275.1664 kcal/mol (1274.8047 without restraints) Performing minimization step: 2156. Total energy = 1274.6621 kcal/mol (1274.3006 without restraints) Performing minimization step: 2157. Total energy = 1274.1583 kcal/mol (1273.7970 without restraints) Performing minimization step: 2158. Total energy = 1273.6549 kcal/mol (1273.2939 without restraints) Performing minimization step: 2159. Total energy = 1273.1520 kcal/mol (1272.7912 without restraints) Performing minimization step: 2160. Total energy = 1272.6495 kcal/mol (1272.2887 without restraints) Performing minimization step: 2161. Total energy = 1272.1474 kcal/mol (1271.7869 without restraints) Performing minimization step: 2162. Total energy = 1271.6458 kcal/mol (1271.2856 without restraints) Performing minimization step: 2163. Total energy = 1271.1447 kcal/mol (1270.7847 without restraints) Performing minimization step: 2164. Total energy = 1270.6439 kcal/mol (1270.2841 without restraints) Performing minimization step: 2165. Total energy = 1270.1438 kcal/mol (1269.7842 without restraints) Performing minimization step: 2166. Total energy = 1269.6441 kcal/mol (1269.2847 without restraints) Performing minimization step: 2167. Total energy = 1269.1449 kcal/mol (1268.7857 without restraints) Performing minimization step: 2168. Total energy = 1268.6462 kcal/mol (1268.2872 without restraints) Performing minimization step: 2169. Total energy = 1268.1479 kcal/mol (1267.7891 without restraints) Performing minimization step: 2170. Total energy = 1267.6501 kcal/mol (1267.2914 without restraints) Performing minimization step: 2171. Total energy = 1267.1527 kcal/mol (1266.7943 without restraints) Performing minimization step: 2172. Total energy = 1266.6557 kcal/mol (1266.2975 without restraints) Performing minimization step: 2173. Total energy = 1266.1593 kcal/mol (1265.8013 without restraints) Performing minimization step: 2174. Total energy = 1265.6633 kcal/mol (1265.3055 without restraints) Performing minimization step: 2175. Total energy = 1265.1677 kcal/mol (1264.8101 without restraints) Performing minimization step: 2176. Total energy = 1264.6726 kcal/mol (1264.3152 without restraints) Performing minimization step: 2177. Total energy = 1264.1782 kcal/mol (1263.8209 without restraints) Performing minimization step: 2178. Total energy = 1263.6842 kcal/mol (1263.3271 without restraints) Performing minimization step: 2179. Total energy = 1263.1906 kcal/mol (1262.8338 without restraints) Performing minimization step: 2180. Total energy = 1262.6973 kcal/mol (1262.3407 without restraints) Performing minimization step: 2181. Total energy = 1262.2045 kcal/mol (1261.8480 without restraints) Performing minimization step: 2182. Total energy = 1261.7120 kcal/mol (1261.3558 without restraints) Performing minimization step: 2183. Total energy = 1261.2201 kcal/mol (1260.8640 without restraints) Performing minimization step: 2184. Total energy = 1260.7286 kcal/mol (1260.3727 without restraints) Performing minimization step: 2185. Total energy = 1260.2375 kcal/mol (1259.8818 without restraints) Performing minimization step: 2186. Total energy = 1259.7468 kcal/mol (1259.3914 without restraints) Performing minimization step: 2187. Total energy = 1259.2566 kcal/mol (1258.9014 without restraints) Performing minimization step: 2188. Total energy = 1258.7669 kcal/mol (1258.4118 without restraints) Performing minimization step: 2189. Total energy = 1258.2776 kcal/mol (1257.9227 without restraints) Performing minimization step: 2190. Total energy = 1257.7886 kcal/mol (1257.4339 without restraints) Performing minimization step: 2191. Total energy = 1257.3001 kcal/mol (1256.9457 without restraints) Performing minimization step: 2192. Total energy = 1256.8122 kcal/mol (1256.4579 without restraints) Performing minimization step: 2193. Total energy = 1256.3246 kcal/mol (1255.9705 without restraints) Performing minimization step: 2194. Total energy = 1255.8375 kcal/mol (1255.4836 without restraints) Performing minimization step: 2195. Total energy = 1255.3509 kcal/mol (1254.9972 without restraints) Performing minimization step: 2196. Total energy = 1254.8648 kcal/mol (1254.5114 without restraints) Performing minimization step: 2197. Total energy = 1254.3793 kcal/mol (1254.0260 without restraints) Performing minimization step: 2198. Total energy = 1253.8940 kcal/mol (1253.5408 without restraints) Performing minimization step: 2199. Total energy = 1253.4091 kcal/mol (1253.0561 without restraints) Performing minimization step: 2200. Total energy = 1252.9246 kcal/mol (1252.5719 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 1252.4406 kcal/mol (1252.0880 without restraints) Performing minimization step: 2202. Total energy = 1251.9568 kcal/mol (1251.6044 without restraints) Performing minimization step: 2203. Total energy = 1251.4739 kcal/mol (1251.1217 without restraints) Performing minimization step: 2204. Total energy = 1250.9912 kcal/mol (1250.6393 without restraints) Performing minimization step: 2205. Total energy = 1250.5090 kcal/mol (1250.1572 without restraints) Performing minimization step: 2206. Total energy = 1250.0271 kcal/mol (1249.6755 without restraints) Performing minimization step: 2207. Total energy = 1249.5457 kcal/mol (1249.1943 without restraints) Performing minimization step: 2208. Total energy = 1249.0651 kcal/mol (1248.7139 without restraints) Performing minimization step: 2209. Total energy = 1248.5847 kcal/mol (1248.2336 without restraints) Performing minimization step: 2210. Total energy = 1248.1046 kcal/mol (1247.7536 without restraints) Performing minimization step: 2211. Total energy = 1247.6249 kcal/mol (1247.2741 without restraints) Performing minimization step: 2212. Total energy = 1247.1457 kcal/mol (1246.7951 without restraints) Performing minimization step: 2213. Total energy = 1246.6672 kcal/mol (1246.3169 without restraints) Performing minimization step: 2214. Total energy = 1246.1889 kcal/mol (1245.8387 without restraints) Performing minimization step: 2215. Total energy = 1245.7109 kcal/mol (1245.3609 without restraints) Performing minimization step: 2216. Total energy = 1245.2334 kcal/mol (1244.8836 without restraints) Performing minimization step: 2217. Total energy = 1244.7563 kcal/mol (1244.4067 without restraints) Performing minimization step: 2218. Total energy = 1244.2796 kcal/mol (1243.9302 without restraints) Performing minimization step: 2219. Total energy = 1243.8036 kcal/mol (1243.4543 without restraints) Performing minimization step: 2220. Total energy = 1243.3279 kcal/mol (1242.9789 without restraints) Performing minimization step: 2221. Total energy = 1242.8528 kcal/mol (1242.5039 without restraints) Performing minimization step: 2222. Total energy = 1242.3778 kcal/mol (1242.0291 without restraints) Performing minimization step: 2223. Total energy = 1241.9033 kcal/mol (1241.5547 without restraints) Performing minimization step: 2224. Total energy = 1241.4292 kcal/mol (1241.0808 without restraints) Performing minimization step: 2225. Total energy = 1240.9555 kcal/mol (1240.6073 without restraints) Performing minimization step: 2226. Total energy = 1240.4825 kcal/mol (1240.1345 without restraints) Performing minimization step: 2227. Total energy = 1240.0094 kcal/mol (1239.6615 without restraints) Performing minimization step: 2228. Total energy = 1239.5371 kcal/mol (1239.1894 without restraints) Performing minimization step: 2229. Total energy = 1239.0651 kcal/mol (1238.7176 without restraints) Performing minimization step: 2230. Total energy = 1238.5936 kcal/mol (1238.2463 without restraints) Performing minimization step: 2231. Total energy = 1238.1224 kcal/mol (1237.7753 without restraints) Performing minimization step: 2232. Total energy = 1237.6514 kcal/mol (1237.3044 without restraints) Performing minimization step: 2233. Total energy = 1237.1811 kcal/mol (1236.8343 without restraints) Performing minimization step: 2234. Total energy = 1236.7115 kcal/mol (1236.3649 without restraints) Performing minimization step: 2235. Total energy = 1236.2420 kcal/mol (1235.8956 without restraints) Performing minimization step: 2236. Total energy = 1235.7730 kcal/mol (1235.4268 without restraints) Performing minimization step: 2237. Total energy = 1235.3045 kcal/mol (1234.9584 without restraints) Performing minimization step: 2238. Total energy = 1234.8364 kcal/mol (1234.4905 without restraints) Performing minimization step: 2239. Total energy = 1234.3687 kcal/mol (1234.0230 without restraints) Performing minimization step: 2240. Total energy = 1233.9014 kcal/mol (1233.5559 without restraints) Performing minimization step: 2241. Total energy = 1233.4345 kcal/mol (1233.0892 without restraints) Performing minimization step: 2242. Total energy = 1232.9681 kcal/mol (1232.6230 without restraints) Performing minimization step: 2243. Total energy = 1232.5021 kcal/mol (1232.1571 without restraints) Performing minimization step: 2244. Total energy = 1232.0366 kcal/mol (1231.6918 without restraints) Performing minimization step: 2245. Total energy = 1231.5714 kcal/mol (1231.2268 without restraints) Performing minimization step: 2246. Total energy = 1231.1067 kcal/mol (1230.7622 without restraints) Performing minimization step: 2247. Total energy = 1230.6423 kcal/mol (1230.2980 without restraints) Performing minimization step: 2248. Total energy = 1230.1780 kcal/mol (1229.8339 without restraints) Performing minimization step: 2249. Total energy = 1229.7146 kcal/mol (1229.3706 without restraints) Performing minimization step: 2250. Total energy = 1229.2515 kcal/mol (1228.9077 without restraints) Performing minimization step: 2251. Total energy = 1228.7889 kcal/mol (1228.4452 without restraints) Performing minimization step: 2252. Total energy = 1228.3266 kcal/mol (1227.9832 without restraints) Performing minimization step: 2253. Total energy = 1227.8647 kcal/mol (1227.5213 without restraints) Performing minimization step: 2254. Total energy = 1227.4032 kcal/mol (1227.0601 without restraints) Performing minimization step: 2255. Total energy = 1226.9423 kcal/mol (1226.5994 without restraints) Performing minimization step: 2256. Total energy = 1226.4819 kcal/mol (1226.1392 without restraints) Performing minimization step: 2257. Total energy = 1226.0217 kcal/mol (1225.6791 without restraints) Performing minimization step: 2258. Total energy = 1225.5620 kcal/mol (1225.2196 without restraints) Performing minimization step: 2259. Total energy = 1225.1028 kcal/mol (1224.7605 without restraints) Performing minimization step: 2260. Total energy = 1224.6439 kcal/mol (1224.3018 without restraints) Performing minimization step: 2261. Total energy = 1224.1857 kcal/mol (1223.8438 without restraints) Performing minimization step: 2262. Total energy = 1223.7277 kcal/mol (1223.3859 without restraints) Performing minimization step: 2263. Total energy = 1223.2702 kcal/mol (1222.9287 without restraints) Performing minimization step: 2264. Total energy = 1222.8132 kcal/mol (1222.4717 without restraints) Performing minimization step: 2265. Total energy = 1222.3565 kcal/mol (1222.0153 without restraints) Performing minimization step: 2266. Total energy = 1221.9004 kcal/mol (1221.5594 without restraints) Performing minimization step: 2267. Total energy = 1221.4447 kcal/mol (1221.1039 without restraints) Performing minimization step: 2268. Total energy = 1220.9894 kcal/mol (1220.6486 without restraints) Performing minimization step: 2269. Total energy = 1220.5344 kcal/mol (1220.1939 without restraints) Performing minimization step: 2270. Total energy = 1220.0799 kcal/mol (1219.7394 without restraints) Performing minimization step: 2271. Total energy = 1219.6259 kcal/mol (1219.2856 without restraints) Performing minimization step: 2272. Total energy = 1219.1721 kcal/mol (1218.8320 without restraints) Performing minimization step: 2273. Total energy = 1218.7187 kcal/mol (1218.3787 without restraints) Performing minimization step: 2274. Total energy = 1218.2658 kcal/mol (1217.9260 without restraints) Performing minimization step: 2275. Total energy = 1217.8132 kcal/mol (1217.4736 without restraints) Performing minimization step: 2276. Total energy = 1217.3611 kcal/mol (1217.0216 without restraints) Performing minimization step: 2277. Total energy = 1216.9097 kcal/mol (1216.5704 without restraints) Performing minimization step: 2278. Total energy = 1216.4582 kcal/mol (1216.1191 without restraints) Performing minimization step: 2279. Total energy = 1216.0074 kcal/mol (1215.6684 without restraints) Performing minimization step: 2280. Total energy = 1215.5570 kcal/mol (1215.2181 without restraints) Performing minimization step: 2281. Total energy = 1215.1070 kcal/mol (1214.7683 without restraints) Performing minimization step: 2282. Total energy = 1214.6574 kcal/mol (1214.3189 without restraints) Performing minimization step: 2283. Total energy = 1214.2081 kcal/mol (1213.8698 without restraints) Performing minimization step: 2284. Total energy = 1213.7594 kcal/mol (1213.4213 without restraints) Performing minimization step: 2285. Total energy = 1213.3113 kcal/mol (1212.9733 without restraints) Performing minimization step: 2286. Total energy = 1212.8635 kcal/mol (1212.5256 without restraints) Performing minimization step: 2287. Total energy = 1212.4160 kcal/mol (1212.0783 without restraints) Performing minimization step: 2288. Total energy = 1211.9690 kcal/mol (1211.6314 without restraints) Performing minimization step: 2289. Total energy = 1211.5223 kcal/mol (1211.1850 without restraints) Performing minimization step: 2290. Total energy = 1211.0761 kcal/mol (1210.7389 without restraints) Performing minimization step: 2291. Total energy = 1210.6303 kcal/mol (1210.2933 without restraints) Performing minimization step: 2292. Total energy = 1210.1850 kcal/mol (1209.8481 without restraints) Performing minimization step: 2293. Total energy = 1209.7401 kcal/mol (1209.4033 without restraints) Performing minimization step: 2294. Total energy = 1209.2959 kcal/mol (1208.9594 without restraints) Performing minimization step: 2295. Total energy = 1208.8518 kcal/mol (1208.5154 without restraints) Performing minimization step: 2296. Total energy = 1208.4079 kcal/mol (1208.0717 without restraints) Performing minimization step: 2297. Total energy = 1207.9647 kcal/mol (1207.6286 without restraints) Performing minimization step: 2298. Total energy = 1207.5222 kcal/mol (1207.1862 without restraints) Performing minimization step: 2299. Total energy = 1207.0799 kcal/mol (1206.7442 without restraints) Performing minimization step: 2300. Total energy = 1206.6382 kcal/mol (1206.3026 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 1206.1966 kcal/mol (1205.8612 without restraints) Performing minimization step: 2302. Total energy = 1205.7557 kcal/mol (1205.4204 without restraints) Performing minimization step: 2303. Total energy = 1205.3150 kcal/mol (1204.9799 without restraints) Performing minimization step: 2304. Total energy = 1204.8748 kcal/mol (1204.5397 without restraints) Performing minimization step: 2305. Total energy = 1204.4349 kcal/mol (1204.1000 without restraints) Performing minimization step: 2306. Total energy = 1203.9954 kcal/mol (1203.6607 without restraints) Performing minimization step: 2307. Total energy = 1203.5566 kcal/mol (1203.2221 without restraints) Performing minimization step: 2308. Total energy = 1203.1180 kcal/mol (1202.7836 without restraints) Performing minimization step: 2309. Total energy = 1202.6799 kcal/mol (1202.3456 without restraints) Performing minimization step: 2310. Total energy = 1202.2421 kcal/mol (1201.9080 without restraints) Performing minimization step: 2311. Total energy = 1201.8048 kcal/mol (1201.4708 without restraints) Performing minimization step: 2312. Total energy = 1201.3677 kcal/mol (1201.0339 without restraints) Performing minimization step: 2313. Total energy = 1200.9312 kcal/mol (1200.5976 without restraints) Performing minimization step: 2314. Total energy = 1200.4951 kcal/mol (1200.1617 without restraints) Performing minimization step: 2315. Total energy = 1200.0596 kcal/mol (1199.7264 without restraints) Performing minimization step: 2316. Total energy = 1199.6246 kcal/mol (1199.2914 without restraints) Performing minimization step: 2317. Total energy = 1199.1898 kcal/mol (1198.8568 without restraints) Performing minimization step: 2318. Total energy = 1198.7557 kcal/mol (1198.4229 without restraints) Performing minimization step: 2319. Total energy = 1198.3218 kcal/mol (1197.9891 without restraints) Performing minimization step: 2320. Total energy = 1197.8886 kcal/mol (1197.5560 without restraints) Performing minimization step: 2321. Total energy = 1197.4557 kcal/mol (1197.1233 without restraints) Performing minimization step: 2322. Total energy = 1197.0231 kcal/mol (1196.6908 without restraints) Performing minimization step: 2323. Total energy = 1196.5909 kcal/mol (1196.2588 without restraints) Performing minimization step: 2324. Total energy = 1196.1591 kcal/mol (1195.8271 without restraints) Performing minimization step: 2325. Total energy = 1195.7277 kcal/mol (1195.3959 without restraints) Performing minimization step: 2326. Total energy = 1195.2968 kcal/mol (1194.9651 without restraints) Performing minimization step: 2327. Total energy = 1194.8663 kcal/mol (1194.5348 without restraints) Performing minimization step: 2328. Total energy = 1194.4362 kcal/mol (1194.1048 without restraints) Performing minimization step: 2329. Total energy = 1194.0065 kcal/mol (1193.6753 without restraints) Performing minimization step: 2330. Total energy = 1193.5773 kcal/mol (1193.2463 without restraints) Performing minimization step: 2331. Total energy = 1193.1485 kcal/mol (1192.8176 without restraints) Performing minimization step: 2332. Total energy = 1192.7206 kcal/mol (1192.3899 without restraints) Performing minimization step: 2333. Total energy = 1192.2927 kcal/mol (1191.9621 without restraints) Performing minimization step: 2334. Total energy = 1191.8652 kcal/mol (1191.5347 without restraints) Performing minimization step: 2335. Total energy = 1191.4381 kcal/mol (1191.1078 without restraints) Performing minimization step: 2336. Total energy = 1191.0114 kcal/mol (1190.6812 without restraints) Performing minimization step: 2337. Total energy = 1190.5852 kcal/mol (1190.2552 without restraints) Performing minimization step: 2338. Total energy = 1190.1594 kcal/mol (1189.8295 without restraints) Performing minimization step: 2339. Total energy = 1189.7340 kcal/mol (1189.4043 without restraints) Performing minimization step: 2340. Total energy = 1189.3090 kcal/mol (1188.9795 without restraints) Performing minimization step: 2341. Total energy = 1188.8845 kcal/mol (1188.5551 without restraints) Performing minimization step: 2342. Total energy = 1188.4604 kcal/mol (1188.1312 without restraints) Performing minimization step: 2343. Total energy = 1188.0368 kcal/mol (1187.7077 without restraints) Performing minimization step: 2344. Total energy = 1187.6134 kcal/mol (1187.2844 without restraints) Performing minimization step: 2345. Total energy = 1187.1906 kcal/mol (1186.8617 without restraints) Performing minimization step: 2346. Total energy = 1186.7682 kcal/mol (1186.4395 without restraints) Performing minimization step: 2347. Total energy = 1186.3463 kcal/mol (1186.0178 without restraints) Performing minimization step: 2348. Total energy = 1185.9248 kcal/mol (1185.5964 without restraints) Performing minimization step: 2349. Total energy = 1185.5037 kcal/mol (1185.1755 without restraints) Performing minimization step: 2350. Total energy = 1185.0831 kcal/mol (1184.7550 without restraints) Performing minimization step: 2351. Total energy = 1184.6629 kcal/mol (1184.3349 without restraints) Performing minimization step: 2352. Total energy = 1184.2431 kcal/mol (1183.9152 without restraints) Performing minimization step: 2353. Total energy = 1183.8240 kcal/mol (1183.4965 without restraints) Performing minimization step: 2354. Total energy = 1183.4052 kcal/mol (1183.0777 without restraints) Performing minimization step: 2355. Total energy = 1182.9867 kcal/mol (1182.6594 without restraints) Performing minimization step: 2356. Total energy = 1182.5687 kcal/mol (1182.2415 without restraints) Performing minimization step: 2357. Total energy = 1182.1511 kcal/mol (1181.8240 without restraints) Performing minimization step: 2358. Total energy = 1181.7339 kcal/mol (1181.4069 without restraints) Performing minimization step: 2359. Total energy = 1181.3171 kcal/mol (1180.9903 without restraints) Performing minimization step: 2360. Total energy = 1180.9009 kcal/mol (1180.5743 without restraints) Performing minimization step: 2361. Total energy = 1180.4851 kcal/mol (1180.1586 without restraints) Performing minimization step: 2362. Total energy = 1180.0697 kcal/mol (1179.7433 without restraints) Performing minimization step: 2363. Total energy = 1179.6548 kcal/mol (1179.3286 without restraints) Performing minimization step: 2364. Total energy = 1179.2402 kcal/mol (1178.9141 without restraints) Performing minimization step: 2365. Total energy = 1178.8258 kcal/mol (1178.4999 without restraints) Performing minimization step: 2366. Total energy = 1178.4121 kcal/mol (1178.0863 without restraints) Performing minimization step: 2367. Total energy = 1177.9988 kcal/mol (1177.6731 without restraints) Performing minimization step: 2368. Total energy = 1177.5860 kcal/mol (1177.2606 without restraints) Performing minimization step: 2369. Total energy = 1177.1736 kcal/mol (1176.8483 without restraints) Performing minimization step: 2370. Total energy = 1176.7616 kcal/mol (1176.4364 without restraints) Performing minimization step: 2371. Total energy = 1176.3501 kcal/mol (1176.0250 without restraints) Performing minimization step: 2372. Total energy = 1175.9389 kcal/mol (1175.6140 without restraints) Performing minimization step: 2373. Total energy = 1175.5282 kcal/mol (1175.2034 without restraints) Performing minimization step: 2374. Total energy = 1175.1179 kcal/mol (1174.7932 without restraints) Performing minimization step: 2375. Total energy = 1174.7080 kcal/mol (1174.3835 without restraints) Performing minimization step: 2376. Total energy = 1174.2984 kcal/mol (1173.9740 without restraints) Performing minimization step: 2377. Total energy = 1173.8893 kcal/mol (1173.5651 without restraints) Performing minimization step: 2378. Total energy = 1173.4808 kcal/mol (1173.1567 without restraints) Performing minimization step: 2379. Total energy = 1173.0727 kcal/mol (1172.7487 without restraints) Performing minimization step: 2380. Total energy = 1172.6652 kcal/mol (1172.3413 without restraints) Performing minimization step: 2381. Total energy = 1172.2579 kcal/mol (1171.9342 without restraints) Performing minimization step: 2382. Total energy = 1171.8511 kcal/mol (1171.5275 without restraints) Performing minimization step: 2383. Total energy = 1171.4447 kcal/mol (1171.1212 without restraints) Performing minimization step: 2384. Total energy = 1171.0393 kcal/mol (1170.7160 without restraints) Performing minimization step: 2385. Total energy = 1170.6338 kcal/mol (1170.3106 without restraints) Performing minimization step: 2386. Total energy = 1170.2289 kcal/mol (1169.9059 without restraints) Performing minimization step: 2387. Total energy = 1169.8242 kcal/mol (1169.5013 without restraints) Performing minimization step: 2388. Total energy = 1169.4204 kcal/mol (1169.0976 without restraints) Performing minimization step: 2389. Total energy = 1169.0163 kcal/mol (1168.6937 without restraints) Performing minimization step: 2390. Total energy = 1168.6127 kcal/mol (1168.2901 without restraints) Performing minimization step: 2391. Total energy = 1168.2096 kcal/mol (1167.8873 without restraints) Performing minimization step: 2392. Total energy = 1167.8071 kcal/mol (1167.4849 without restraints) Performing minimization step: 2393. Total energy = 1167.4050 kcal/mol (1167.0829 without restraints) Performing minimization step: 2394. Total energy = 1167.0034 kcal/mol (1166.6815 without restraints) Performing minimization step: 2395. Total energy = 1166.6022 kcal/mol (1166.2804 without restraints) Performing minimization step: 2396. Total energy = 1166.2019 kcal/mol (1165.8802 without restraints) Performing minimization step: 2397. Total energy = 1165.8016 kcal/mol (1165.4800 without restraints) Performing minimization step: 2398. Total energy = 1165.4017 kcal/mol (1165.0803 without restraints) Performing minimization step: 2399. Total energy = 1165.0022 kcal/mol (1164.6810 without restraints) Performing minimization step: 2400. Total energy = 1164.6032 kcal/mol (1164.2821 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 1164.2046 kcal/mol (1163.8836 without restraints) Performing minimization step: 2402. Total energy = 1163.8065 kcal/mol (1163.4856 without restraints) Performing minimization step: 2403. Total energy = 1163.4087 kcal/mol (1163.0880 without restraints) Performing minimization step: 2404. Total energy = 1163.0114 kcal/mol (1162.6908 without restraints) Performing minimization step: 2405. Total energy = 1162.6146 kcal/mol (1162.2941 without restraints) Performing minimization step: 2406. Total energy = 1162.2182 kcal/mol (1161.8978 without restraints) Performing minimization step: 2407. Total energy = 1161.8222 kcal/mol (1161.5020 without restraints) Performing minimization step: 2408. Total energy = 1161.4269 kcal/mol (1161.1068 without restraints) Performing minimization step: 2409. Total energy = 1161.0318 kcal/mol (1160.7120 without restraints) Performing minimization step: 2410. Total energy = 1160.6374 kcal/mol (1160.3176 without restraints) Performing minimization step: 2411. Total energy = 1160.2432 kcal/mol (1159.9235 without restraints) Performing minimization step: 2412. Total energy = 1159.8498 kcal/mol (1159.5302 without restraints) Performing minimization step: 2413. Total energy = 1159.4565 kcal/mol (1159.1372 without restraints) Performing minimization step: 2414. Total energy = 1159.0639 kcal/mol (1158.7446 without restraints) Performing minimization step: 2415. Total energy = 1158.6714 kcal/mol (1158.3522 without restraints) Performing minimization step: 2416. Total energy = 1158.2793 kcal/mol (1157.9602 without restraints) Performing minimization step: 2417. Total energy = 1157.8876 kcal/mol (1157.5687 without restraints) Performing minimization step: 2418. Total energy = 1157.4965 kcal/mol (1157.1777 without restraints) Performing minimization step: 2419. Total energy = 1157.1059 kcal/mol (1156.7872 without restraints) Performing minimization step: 2420. Total energy = 1156.7155 kcal/mol (1156.3970 without restraints) Performing minimization step: 2421. Total energy = 1156.3255 kcal/mol (1156.0070 without restraints) Performing minimization step: 2422. Total energy = 1155.9357 kcal/mol (1155.6175 without restraints) Performing minimization step: 2423. Total energy = 1155.5467 kcal/mol (1155.2286 without restraints) Performing minimization step: 2424. Total energy = 1155.1581 kcal/mol (1154.8401 without restraints) Performing minimization step: 2425. Total energy = 1154.7699 kcal/mol (1154.4520 without restraints) Performing minimization step: 2426. Total energy = 1154.3822 kcal/mol (1154.0644 without restraints) Performing minimization step: 2427. Total energy = 1153.9949 kcal/mol (1153.6773 without restraints) Performing minimization step: 2428. Total energy = 1153.6081 kcal/mol (1153.2907 without restraints) Performing minimization step: 2429. Total energy = 1153.2218 kcal/mol (1152.9044 without restraints) Performing minimization step: 2430. Total energy = 1152.8358 kcal/mol (1152.5185 without restraints) Performing minimization step: 2431. Total energy = 1152.4500 kcal/mol (1152.1329 without restraints) Performing minimization step: 2432. Total energy = 1152.0649 kcal/mol (1151.7479 without restraints) Performing minimization step: 2433. Total energy = 1151.6802 kcal/mol (1151.3633 without restraints) Performing minimization step: 2434. Total energy = 1151.2960 kcal/mol (1150.9794 without restraints) Performing minimization step: 2435. Total energy = 1150.9123 kcal/mol (1150.5957 without restraints) Performing minimization step: 2436. Total energy = 1150.5289 kcal/mol (1150.2124 without restraints) Performing minimization step: 2437. Total energy = 1150.1461 kcal/mol (1149.8298 without restraints) Performing minimization step: 2438. Total energy = 1149.7636 kcal/mol (1149.4474 without restraints) Performing minimization step: 2439. Total energy = 1149.3813 kcal/mol (1149.0652 without restraints) Performing minimization step: 2440. Total energy = 1148.9996 kcal/mol (1148.6837 without restraints) Performing minimization step: 2441. Total energy = 1148.6184 kcal/mol (1148.3026 without restraints) Performing minimization step: 2442. Total energy = 1148.2376 kcal/mol (1147.9219 without restraints) Performing minimization step: 2443. Total energy = 1147.8572 kcal/mol (1147.5416 without restraints) Performing minimization step: 2444. Total energy = 1147.4773 kcal/mol (1147.1618 without restraints) Performing minimization step: 2445. Total energy = 1147.0978 kcal/mol (1146.7824 without restraints) Performing minimization step: 2446. Total energy = 1146.7187 kcal/mol (1146.4035 without restraints) Performing minimization step: 2447. Total energy = 1146.3400 kcal/mol (1146.0249 without restraints) Performing minimization step: 2448. Total energy = 1145.9624 kcal/mol (1145.6474 without restraints) Performing minimization step: 2449. Total energy = 1145.5844 kcal/mol (1145.2695 without restraints) Performing minimization step: 2450. Total energy = 1145.2070 kcal/mol (1144.8923 without restraints) Performing minimization step: 2451. Total energy = 1144.8301 kcal/mol (1144.5155 without restraints) Performing minimization step: 2452. Total energy = 1144.4535 kcal/mol (1144.1391 without restraints) Performing minimization step: 2453. Total energy = 1144.0775 kcal/mol (1143.7631 without restraints) Performing minimization step: 2454. Total energy = 1143.7018 kcal/mol (1143.3876 without restraints) Performing minimization step: 2455. Total energy = 1143.3266 kcal/mol (1143.0125 without restraints) Performing minimization step: 2456. Total energy = 1142.9519 kcal/mol (1142.6379 without restraints) Performing minimization step: 2457. Total energy = 1142.5775 kcal/mol (1142.2637 without restraints) Performing minimization step: 2458. Total energy = 1142.2041 kcal/mol (1141.8903 without restraints) Performing minimization step: 2459. Total energy = 1141.8306 kcal/mol (1141.5170 without restraints) Performing minimization step: 2460. Total energy = 1141.4573 kcal/mol (1141.1438 without restraints) Performing minimization step: 2461. Total energy = 1141.0847 kcal/mol (1140.7713 without restraints) Performing minimization step: 2462. Total energy = 1140.7125 kcal/mol (1140.3992 without restraints) Performing minimization step: 2463. Total energy = 1140.3405 kcal/mol (1140.0273 without restraints) Performing minimization step: 2464. Total energy = 1139.9693 kcal/mol (1139.6563 without restraints) Performing minimization step: 2465. Total energy = 1139.5985 kcal/mol (1139.2856 without restraints) Performing minimization step: 2466. Total energy = 1139.2282 kcal/mol (1138.9155 without restraints) Performing minimization step: 2467. Total energy = 1138.8582 kcal/mol (1138.5455 without restraints) Performing minimization step: 2468. Total energy = 1138.4884 kcal/mol (1138.1758 without restraints) Performing minimization step: 2469. Total energy = 1138.1192 kcal/mol (1137.8068 without restraints) Performing minimization step: 2470. Total energy = 1137.7504 kcal/mol (1137.4381 without restraints) Performing minimization step: 2471. Total energy = 1137.3823 kcal/mol (1137.0701 without restraints) Performing minimization step: 2472. Total energy = 1137.0144 kcal/mol (1136.7024 without restraints) Performing minimization step: 2473. Total energy = 1136.6469 kcal/mol (1136.3350 without restraints) Performing minimization step: 2474. Total energy = 1136.2799 kcal/mol (1135.9681 without restraints) Performing minimization step: 2475. Total energy = 1135.9132 kcal/mol (1135.6015 without restraints) Performing minimization step: 2476. Total energy = 1135.5471 kcal/mol (1135.2355 without restraints) Performing minimization step: 2477. Total energy = 1135.1813 kcal/mol (1134.8698 without restraints) Performing minimization step: 2478. Total energy = 1134.8160 kcal/mol (1134.5046 without restraints) Performing minimization step: 2479. Total energy = 1134.4511 kcal/mol (1134.1398 without restraints) Performing minimization step: 2480. Total energy = 1134.0865 kcal/mol (1133.7754 without restraints) Performing minimization step: 2481. Total energy = 1133.7224 kcal/mol (1133.4113 without restraints) Performing minimization step: 2482. Total energy = 1133.3587 kcal/mol (1133.0478 without restraints) Performing minimization step: 2483. Total energy = 1132.9955 kcal/mol (1132.6848 without restraints) Performing minimization step: 2484. Total energy = 1132.6329 kcal/mol (1132.3223 without restraints) Performing minimization step: 2485. Total energy = 1132.2706 kcal/mol (1131.9601 without restraints) Performing minimization step: 2486. Total energy = 1131.9087 kcal/mol (1131.5983 without restraints) Performing minimization step: 2487. Total energy = 1131.5472 kcal/mol (1131.2369 without restraints) Performing minimization step: 2488. Total energy = 1131.1861 kcal/mol (1130.8760 without restraints) Performing minimization step: 2489. Total energy = 1130.8255 kcal/mol (1130.5155 without restraints) Performing minimization step: 2490. Total energy = 1130.4653 kcal/mol (1130.1554 without restraints) Performing minimization step: 2491. Total energy = 1130.1055 kcal/mol (1129.7957 without restraints) Performing minimization step: 2492. Total energy = 1129.7462 kcal/mol (1129.4365 without restraints) Performing minimization step: 2493. Total energy = 1129.3874 kcal/mol (1129.0779 without restraints) Performing minimization step: 2494. Total energy = 1129.0290 kcal/mol (1128.7195 without restraints) Performing minimization step: 2495. Total energy = 1128.6709 kcal/mol (1128.3615 without restraints) Performing minimization step: 2496. Total energy = 1128.3134 kcal/mol (1128.0041 without restraints) Performing minimization step: 2497. Total energy = 1127.9562 kcal/mol (1127.6470 without restraints) Performing minimization step: 2498. Total energy = 1127.5994 kcal/mol (1127.2903 without restraints) Performing minimization step: 2499. Total energy = 1127.2430 kcal/mol (1126.9341 without restraints) Performing minimization step: 2500. Total energy = 1126.8870 kcal/mol (1126.5782 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 1126.5315 kcal/mol (1126.2228 without restraints) Performing minimization step: 2502. Total energy = 1126.1764 kcal/mol (1125.8678 without restraints) Performing minimization step: 2503. Total energy = 1125.8217 kcal/mol (1125.5132 without restraints) Performing minimization step: 2504. Total energy = 1125.4674 kcal/mol (1125.1590 without restraints) Performing minimization step: 2505. Total energy = 1125.1135 kcal/mol (1124.8053 without restraints) Performing minimization step: 2506. Total energy = 1124.7601 kcal/mol (1124.4520 without restraints) Performing minimization step: 2507. Total energy = 1124.4071 kcal/mol (1124.0991 without restraints) Performing minimization step: 2508. Total energy = 1124.0545 kcal/mol (1123.7466 without restraints) Performing minimization step: 2509. Total energy = 1123.7025 kcal/mol (1123.3947 without restraints) Performing minimization step: 2510. Total energy = 1123.3508 kcal/mol (1123.0431 without restraints) Performing minimization step: 2511. Total energy = 1122.9992 kcal/mol (1122.6916 without restraints) Performing minimization step: 2512. Total energy = 1122.6484 kcal/mol (1122.3410 without restraints) Performing minimization step: 2513. Total energy = 1122.2984 kcal/mol (1121.9911 without restraints) Performing minimization step: 2514. Total energy = 1121.9483 kcal/mol (1121.6411 without restraints) Performing minimization step: 2515. Total energy = 1121.5987 kcal/mol (1121.2915 without restraints) Performing minimization step: 2516. Total energy = 1121.2494 kcal/mol (1120.9424 without restraints) Performing minimization step: 2517. Total energy = 1120.9007 kcal/mol (1120.5938 without restraints) Performing minimization step: 2518. Total energy = 1120.5523 kcal/mol (1120.2455 without restraints) Performing minimization step: 2519. Total energy = 1120.2043 kcal/mol (1119.8976 without restraints) Performing minimization step: 2520. Total energy = 1119.8569 kcal/mol (1119.5503 without restraints) Performing minimization step: 2521. Total energy = 1119.5098 kcal/mol (1119.2033 without restraints) Performing minimization step: 2522. Total energy = 1119.1631 kcal/mol (1118.8568 without restraints) Performing minimization step: 2523. Total energy = 1118.8169 kcal/mol (1118.5106 without restraints) Performing minimization step: 2524. Total energy = 1118.4710 kcal/mol (1118.1649 without restraints) Performing minimization step: 2525. Total energy = 1118.1255 kcal/mol (1117.8195 without restraints) Performing minimization step: 2526. Total energy = 1117.7805 kcal/mol (1117.4745 without restraints) Performing minimization step: 2527. Total energy = 1117.4358 kcal/mol (1117.1300 without restraints) Performing minimization step: 2528. Total energy = 1117.0914 kcal/mol (1116.7857 without restraints) Performing minimization step: 2529. Total energy = 1116.7476 kcal/mol (1116.4420 without restraints) Performing minimization step: 2530. Total energy = 1116.4043 kcal/mol (1116.0988 without restraints) Performing minimization step: 2531. Total energy = 1116.0613 kcal/mol (1115.7559 without restraints) Performing minimization step: 2532. Total energy = 1115.7188 kcal/mol (1115.4135 without restraints) Performing minimization step: 2533. Total energy = 1115.3766 kcal/mol (1115.0715 without restraints) Performing minimization step: 2534. Total energy = 1115.0347 kcal/mol (1114.7296 without restraints) Performing minimization step: 2535. Total energy = 1114.6934 kcal/mol (1114.3885 without restraints) Performing minimization step: 2536. Total energy = 1114.3526 kcal/mol (1114.0477 without restraints) Performing minimization step: 2537. Total energy = 1114.0120 kcal/mol (1113.7072 without restraints) Performing minimization step: 2538. Total energy = 1113.6719 kcal/mol (1113.3673 without restraints) Performing minimization step: 2539. Total energy = 1113.3323 kcal/mol (1113.0277 without restraints) Performing minimization step: 2540. Total energy = 1112.9930 kcal/mol (1112.6886 without restraints) Performing minimization step: 2541. Total energy = 1112.6540 kcal/mol (1112.3496 without restraints) Performing minimization step: 2542. Total energy = 1112.3158 kcal/mol (1112.0117 without restraints) Performing minimization step: 2543. Total energy = 1111.9780 kcal/mol (1111.6739 without restraints) Performing minimization step: 2544. Total energy = 1111.6404 kcal/mol (1111.3364 without restraints) Performing minimization step: 2545. Total energy = 1111.3032 kcal/mol (1110.9993 without restraints) Performing minimization step: 2546. Total energy = 1110.9665 kcal/mol (1110.6627 without restraints) Performing minimization step: 2547. Total energy = 1110.6302 kcal/mol (1110.3264 without restraints) Performing minimization step: 2548. Total energy = 1110.2947 kcal/mol (1109.9911 without restraints) Performing minimization step: 2549. Total energy = 1109.9592 kcal/mol (1109.6557 without restraints) Performing minimization step: 2550. Total energy = 1109.6241 kcal/mol (1109.3207 without restraints) Performing minimization step: 2551. Total energy = 1109.2894 kcal/mol (1108.9861 without restraints) Performing minimization step: 2552. Total energy = 1108.9551 kcal/mol (1108.6519 without restraints) Performing minimization step: 2553. Total energy = 1108.6214 kcal/mol (1108.3183 without restraints) Performing minimization step: 2554. Total energy = 1108.2879 kcal/mol (1107.9850 without restraints) Performing minimization step: 2555. Total energy = 1107.9549 kcal/mol (1107.6520 without restraints) Performing minimization step: 2556. Total energy = 1107.6224 kcal/mol (1107.3197 without restraints) Performing minimization step: 2557. Total energy = 1107.2906 kcal/mol (1106.9879 without restraints) Performing minimization step: 2558. Total energy = 1106.9588 kcal/mol (1106.6562 without restraints) Performing minimization step: 2559. Total energy = 1106.6277 kcal/mol (1106.3253 without restraints) Performing minimization step: 2560. Total energy = 1106.2968 kcal/mol (1105.9944 without restraints) Performing minimization step: 2561. Total energy = 1105.9661 kcal/mol (1105.6639 without restraints) Performing minimization step: 2562. Total energy = 1105.6359 kcal/mol (1105.3338 without restraints) Performing minimization step: 2563. Total energy = 1105.3062 kcal/mol (1105.0041 without restraints) Performing minimization step: 2564. Total energy = 1104.9768 kcal/mol (1104.6748 without restraints) Performing minimization step: 2565. Total energy = 1104.6476 kcal/mol (1104.3457 without restraints) Performing minimization step: 2566. Total energy = 1104.3192 kcal/mol (1104.0174 without restraints) Performing minimization step: 2567. Total energy = 1103.9910 kcal/mol (1103.6893 without restraints) Performing minimization step: 2568. Total energy = 1103.6632 kcal/mol (1103.3617 without restraints) Performing minimization step: 2569. Total energy = 1103.3360 kcal/mol (1103.0346 without restraints) Performing minimization step: 2570. Total energy = 1103.0091 kcal/mol (1102.7077 without restraints) Performing minimization step: 2571. Total energy = 1102.6825 kcal/mol (1102.3813 without restraints) Performing minimization step: 2572. Total energy = 1102.3564 kcal/mol (1102.0552 without restraints) Performing minimization step: 2573. Total energy = 1102.0305 kcal/mol (1101.7294 without restraints) Performing minimization step: 2574. Total energy = 1101.7051 kcal/mol (1101.4042 without restraints) Performing minimization step: 2575. Total energy = 1101.3800 kcal/mol (1101.0792 without restraints) Performing minimization step: 2576. Total energy = 1101.0555 kcal/mol (1100.7547 without restraints) Performing minimization step: 2577. Total energy = 1100.7311 kcal/mol (1100.4304 without restraints) Performing minimization step: 2578. Total energy = 1100.4074 kcal/mol (1100.1068 without restraints) Performing minimization step: 2579. Total energy = 1100.0843 kcal/mol (1099.7838 without restraints) Performing minimization step: 2580. Total energy = 1099.7614 kcal/mol (1099.4610 without restraints) Performing minimization step: 2581. Total energy = 1099.4389 kcal/mol (1099.1386 without restraints) Performing minimization step: 2582. Total energy = 1099.1168 kcal/mol (1098.8166 without restraints) Performing minimization step: 2583. Total energy = 1098.7951 kcal/mol (1098.4950 without restraints) Performing minimization step: 2584. Total energy = 1098.4737 kcal/mol (1098.1737 without restraints) Performing minimization step: 2585. Total energy = 1098.1528 kcal/mol (1097.8529 without restraints) Performing minimization step: 2586. Total energy = 1097.8323 kcal/mol (1097.5325 without restraints) Performing minimization step: 2587. Total energy = 1097.5122 kcal/mol (1097.2125 without restraints) Performing minimization step: 2588. Total energy = 1097.1925 kcal/mol (1096.8928 without restraints) Performing minimization step: 2589. Total energy = 1096.8732 kcal/mol (1096.5737 without restraints) Performing minimization step: 2590. Total energy = 1096.5543 kcal/mol (1096.2548 without restraints) Performing minimization step: 2591. Total energy = 1096.2357 kcal/mol (1095.9364 without restraints) Performing minimization step: 2592. Total energy = 1095.9176 kcal/mol (1095.6183 without restraints) Performing minimization step: 2593. Total energy = 1095.6000 kcal/mol (1095.3009 without restraints) Performing minimization step: 2594. Total energy = 1095.2827 kcal/mol (1094.9836 without restraints) Performing minimization step: 2595. Total energy = 1094.9659 kcal/mol (1094.6669 without restraints) Performing minimization step: 2596. Total energy = 1094.6495 kcal/mol (1094.3507 without restraints) Performing minimization step: 2597. Total energy = 1094.3334 kcal/mol (1094.0347 without restraints) Performing minimization step: 2598. Total energy = 1094.0177 kcal/mol (1093.7190 without restraints) Performing minimization step: 2599. Total energy = 1093.7023 kcal/mol (1093.4037 without restraints) Performing minimization step: 2600. Total energy = 1093.3873 kcal/mol (1093.0888 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 1093.0727 kcal/mol (1092.7743 without restraints) Performing minimization step: 2602. Total energy = 1092.7589 kcal/mol (1092.4606 without restraints) Performing minimization step: 2603. Total energy = 1092.4451 kcal/mol (1092.1469 without restraints) Performing minimization step: 2604. Total energy = 1092.1317 kcal/mol (1091.8336 without restraints) Performing minimization step: 2605. Total energy = 1091.8187 kcal/mol (1091.5206 without restraints) Performing minimization step: 2606. Total energy = 1091.5060 kcal/mol (1091.2081 without restraints) Performing minimization step: 2607. Total energy = 1091.1938 kcal/mol (1090.8960 without restraints) Performing minimization step: 2608. Total energy = 1090.8816 kcal/mol (1090.5839 without restraints) Performing minimization step: 2609. Total energy = 1090.5703 kcal/mol (1090.2727 without restraints) Performing minimization step: 2610. Total energy = 1090.2593 kcal/mol (1089.9618 without restraints) Performing minimization step: 2611. Total energy = 1089.9486 kcal/mol (1089.6512 without restraints) Performing minimization step: 2612. Total energy = 1089.6386 kcal/mol (1089.3412 without restraints) Performing minimization step: 2613. Total energy = 1089.3287 kcal/mol (1089.0314 without restraints) Performing minimization step: 2614. Total energy = 1089.0192 kcal/mol (1088.7220 without restraints) Performing minimization step: 2615. Total energy = 1088.7102 kcal/mol (1088.4131 without restraints) Performing minimization step: 2616. Total energy = 1088.4011 kcal/mol (1088.1040 without restraints) Performing minimization step: 2617. Total energy = 1088.0930 kcal/mol (1087.7961 without restraints) Performing minimization step: 2618. Total energy = 1087.7846 kcal/mol (1087.4878 without restraints) Performing minimization step: 2619. Total energy = 1087.4770 kcal/mol (1087.1803 without restraints) Performing minimization step: 2620. Total energy = 1087.1704 kcal/mol (1086.8738 without restraints) Performing minimization step: 2621. Total energy = 1086.8637 kcal/mol (1086.5671 without restraints) Performing minimization step: 2622. Total energy = 1086.5574 kcal/mol (1086.2610 without restraints) Performing minimization step: 2623. Total energy = 1086.2517 kcal/mol (1085.9553 without restraints) Performing minimization step: 2624. Total energy = 1085.9460 kcal/mol (1085.6497 without restraints) Performing minimization step: 2625. Total energy = 1085.6407 kcal/mol (1085.3445 without restraints) Performing minimization step: 2626. Total energy = 1085.3358 kcal/mol (1085.0397 without restraints) Performing minimization step: 2627. Total energy = 1085.0313 kcal/mol (1084.7353 without restraints) Performing minimization step: 2628. Total energy = 1084.7272 kcal/mol (1084.4312 without restraints) Performing minimization step: 2629. Total energy = 1084.4234 kcal/mol (1084.1276 without restraints) Performing minimization step: 2630. Total energy = 1084.1201 kcal/mol (1083.8243 without restraints) Performing minimization step: 2631. Total energy = 1083.8171 kcal/mol (1083.5214 without restraints) Performing minimization step: 2632. Total energy = 1083.5145 kcal/mol (1083.2189 without restraints) Performing minimization step: 2633. Total energy = 1083.2123 kcal/mol (1082.9168 without restraints) Performing minimization step: 2634. Total energy = 1082.9107 kcal/mol (1082.6153 without restraints) Performing minimization step: 2635. Total energy = 1082.6093 kcal/mol (1082.3139 without restraints) Performing minimization step: 2636. Total energy = 1082.3082 kcal/mol (1082.0129 without restraints) Performing minimization step: 2637. Total energy = 1082.0075 kcal/mol (1081.7123 without restraints) Performing minimization step: 2638. Total energy = 1081.7071 kcal/mol (1081.4120 without restraints) Performing minimization step: 2639. Total energy = 1081.4072 kcal/mol (1081.1122 without restraints) Performing minimization step: 2640. Total energy = 1081.1076 kcal/mol (1080.8127 without restraints) Performing minimization step: 2641. Total energy = 1080.8084 kcal/mol (1080.5136 without restraints) Performing minimization step: 2642. Total energy = 1080.5098 kcal/mol (1080.2151 without restraints) Performing minimization step: 2643. Total energy = 1080.2114 kcal/mol (1079.9167 without restraints) Performing minimization step: 2644. Total energy = 1079.9133 kcal/mol (1079.6187 without restraints) Performing minimization step: 2645. Total energy = 1079.6154 kcal/mol (1079.3209 without restraints) Performing minimization step: 2646. Total energy = 1079.3181 kcal/mol (1079.0237 without restraints) Performing minimization step: 2647. Total energy = 1079.0211 kcal/mol (1078.7268 without restraints) Performing minimization step: 2648. Total energy = 1078.7245 kcal/mol (1078.4303 without restraints) Performing minimization step: 2649. Total energy = 1078.4283 kcal/mol (1078.1342 without restraints) Performing minimization step: 2650. Total energy = 1078.1325 kcal/mol (1077.8384 without restraints) Performing minimization step: 2651. Total energy = 1077.8370 kcal/mol (1077.5431 without restraints) Performing minimization step: 2652. Total energy = 1077.5419 kcal/mol (1077.2480 without restraints) Performing minimization step: 2653. Total energy = 1077.2471 kcal/mol (1076.9533 without restraints) Performing minimization step: 2654. Total energy = 1076.9528 kcal/mol (1076.6591 without restraints) Performing minimization step: 2655. Total energy = 1076.6588 kcal/mol (1076.3652 without restraints) Performing minimization step: 2656. Total energy = 1076.3652 kcal/mol (1076.0716 without restraints) Performing minimization step: 2657. Total energy = 1076.0719 kcal/mol (1075.7785 without restraints) Performing minimization step: 2658. Total energy = 1075.7791 kcal/mol (1075.4857 without restraints) Performing minimization step: 2659. Total energy = 1075.4865 kcal/mol (1075.1932 without restraints) Performing minimization step: 2660. Total energy = 1075.1944 kcal/mol (1074.9012 without restraints) Performing minimization step: 2661. Total energy = 1074.9026 kcal/mol (1074.6095 without restraints) Performing minimization step: 2662. Total energy = 1074.6112 kcal/mol (1074.3182 without restraints) Performing minimization step: 2663. Total energy = 1074.3204 kcal/mol (1074.0274 without restraints) Performing minimization step: 2664. Total energy = 1074.0297 kcal/mol (1073.7368 without restraints) Performing minimization step: 2665. Total energy = 1073.7396 kcal/mol (1073.4468 without restraints) Performing minimization step: 2666. Total energy = 1073.4496 kcal/mol (1073.1569 without restraints) Performing minimization step: 2667. Total energy = 1073.1600 kcal/mol (1072.8674 without restraints) Performing minimization step: 2668. Total energy = 1072.8708 kcal/mol (1072.5782 without restraints) Performing minimization step: 2669. Total energy = 1072.5819 kcal/mol (1072.2894 without restraints) Performing minimization step: 2670. Total energy = 1072.2934 kcal/mol (1072.0010 without restraints) Performing minimization step: 2671. Total energy = 1072.0054 kcal/mol (1071.7131 without restraints) Performing minimization step: 2672. Total energy = 1071.7179 kcal/mol (1071.4256 without restraints) Performing minimization step: 2673. Total energy = 1071.4305 kcal/mol (1071.1383 without restraints) Performing minimization step: 2674. Total energy = 1071.1435 kcal/mol (1070.8515 without restraints) Performing minimization step: 2675. Total energy = 1070.8569 kcal/mol (1070.5649 without restraints) Performing minimization step: 2676. Total energy = 1070.5704 kcal/mol (1070.2784 without restraints) Performing minimization step: 2677. Total energy = 1070.2844 kcal/mol (1069.9925 without restraints) Performing minimization step: 2678. Total energy = 1069.9987 kcal/mol (1069.7069 without restraints) Performing minimization step: 2679. Total energy = 1069.7134 kcal/mol (1069.4217 without restraints) Performing minimization step: 2680. Total energy = 1069.4285 kcal/mol (1069.1369 without restraints) Performing minimization step: 2681. Total energy = 1069.1440 kcal/mol (1068.8524 without restraints) Performing minimization step: 2682. Total energy = 1068.8597 kcal/mol (1068.5683 without restraints) Performing minimization step: 2683. Total energy = 1068.5759 kcal/mol (1068.2845 without restraints) Performing minimization step: 2684. Total energy = 1068.2921 kcal/mol (1068.0007 without restraints) Performing minimization step: 2685. Total energy = 1068.0088 kcal/mol (1067.7176 without restraints) Performing minimization step: 2686. Total energy = 1067.7261 kcal/mol (1067.4351 without restraints) Performing minimization step: 2687. Total energy = 1067.4441 kcal/mol (1067.1530 without restraints) Performing minimization step: 2688. Total energy = 1067.1619 kcal/mol (1066.8708 without restraints) Performing minimization step: 2689. Total energy = 1066.8800 kcal/mol (1066.5891 without restraints) Performing minimization step: 2690. Total energy = 1066.5989 kcal/mol (1066.3080 without restraints) Performing minimization step: 2691. Total energy = 1066.3179 kcal/mol (1066.0271 without restraints) Performing minimization step: 2692. Total energy = 1066.0372 kcal/mol (1065.7465 without restraints) Performing minimization step: 2693. Total energy = 1065.7567 kcal/mol (1065.4661 without restraints) Performing minimization step: 2694. Total energy = 1065.4766 kcal/mol (1065.1859 without restraints) Performing minimization step: 2695. Total energy = 1065.1967 kcal/mol (1064.9061 without restraints) Performing minimization step: 2696. Total energy = 1064.9173 kcal/mol (1064.6269 without restraints) Performing minimization step: 2697. Total energy = 1064.6384 kcal/mol (1064.3480 without restraints) Performing minimization step: 2698. Total energy = 1064.3599 kcal/mol (1064.0697 without restraints) Performing minimization step: 2699. Total energy = 1064.0820 kcal/mol (1063.7918 without restraints) Performing minimization step: 2700. Total energy = 1063.8042 kcal/mol (1063.5141 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 1063.5268 kcal/mol (1063.2369 without restraints) Performing minimization step: 2702. Total energy = 1063.2497 kcal/mol (1062.9598 without restraints) Performing minimization step: 2703. Total energy = 1062.9729 kcal/mol (1062.6830 without restraints) Performing minimization step: 2704. Total energy = 1062.6964 kcal/mol (1062.4065 without restraints) Performing minimization step: 2705. Total energy = 1062.4206 kcal/mol (1062.1308 without restraints) Performing minimization step: 2706. Total energy = 1062.1446 kcal/mol (1061.8549 without restraints) Performing minimization step: 2707. Total energy = 1061.8691 kcal/mol (1061.5795 without restraints) Performing minimization step: 2708. Total energy = 1061.5939 kcal/mol (1061.3044 without restraints) Performing minimization step: 2709. Total energy = 1061.3191 kcal/mol (1061.0297 without restraints) Performing minimization step: 2710. Total energy = 1061.0447 kcal/mol (1060.7553 without restraints) Performing minimization step: 2711. Total energy = 1060.7705 kcal/mol (1060.4812 without restraints) Performing minimization step: 2712. Total energy = 1060.4969 kcal/mol (1060.2077 without restraints) Performing minimization step: 2713. Total energy = 1060.2234 kcal/mol (1059.9343 without restraints) Performing minimization step: 2714. Total energy = 1059.9503 kcal/mol (1059.6612 without restraints) Performing minimization step: 2715. Total energy = 1059.6776 kcal/mol (1059.3885 without restraints) Performing minimization step: 2716. Total energy = 1059.4051 kcal/mol (1059.1162 without restraints) Performing minimization step: 2717. Total energy = 1059.1330 kcal/mol (1058.8442 without restraints) Performing minimization step: 2718. Total energy = 1058.8613 kcal/mol (1058.5725 without restraints) Performing minimization step: 2719. Total energy = 1058.5899 kcal/mol (1058.3011 without restraints) Performing minimization step: 2720. Total energy = 1058.3189 kcal/mol (1058.0303 without restraints) Performing minimization step: 2721. Total energy = 1058.0482 kcal/mol (1057.7596 without restraints) Performing minimization step: 2722. Total energy = 1057.7778 kcal/mol (1057.4893 without restraints) Performing minimization step: 2723. Total energy = 1057.5075 kcal/mol (1057.2191 without restraints) Performing minimization step: 2724. Total energy = 1057.2378 kcal/mol (1056.9494 without restraints) Performing minimization step: 2725. Total energy = 1056.9684 kcal/mol (1056.6801 without restraints) Performing minimization step: 2726. Total energy = 1056.6995 kcal/mol (1056.4112 without restraints) Performing minimization step: 2727. Total energy = 1056.4308 kcal/mol (1056.1426 without restraints) Performing minimization step: 2728. Total energy = 1056.1626 kcal/mol (1055.8746 without restraints) Performing minimization step: 2729. Total energy = 1055.8947 kcal/mol (1055.6067 without restraints) Performing minimization step: 2730. Total energy = 1055.6269 kcal/mol (1055.3390 without restraints) Performing minimization step: 2731. Total energy = 1055.3595 kcal/mol (1055.0716 without restraints) Performing minimization step: 2732. Total energy = 1055.0924 kcal/mol (1054.8046 without restraints) Performing minimization step: 2733. Total energy = 1054.8260 kcal/mol (1054.5383 without restraints) Performing minimization step: 2734. Total energy = 1054.5596 kcal/mol (1054.2719 without restraints) Performing minimization step: 2735. Total energy = 1054.2935 kcal/mol (1054.0058 without restraints) Performing minimization step: 2736. Total energy = 1054.0277 kcal/mol (1053.7401 without restraints) Performing minimization step: 2737. Total energy = 1053.7622 kcal/mol (1053.4747 without restraints) Performing minimization step: 2738. Total energy = 1053.4971 kcal/mol (1053.2097 without restraints) Performing minimization step: 2739. Total energy = 1053.2325 kcal/mol (1052.9451 without restraints) Performing minimization step: 2740. Total energy = 1052.9682 kcal/mol (1052.6809 without restraints) Performing minimization step: 2741. Total energy = 1052.7042 kcal/mol (1052.4170 without restraints) Performing minimization step: 2742. Total energy = 1052.4404 kcal/mol (1052.1533 without restraints) Performing minimization step: 2743. Total energy = 1052.1769 kcal/mol (1051.8898 without restraints) Performing minimization step: 2744. Total energy = 1051.9138 kcal/mol (1051.6268 without restraints) Performing minimization step: 2745. Total energy = 1051.6507 kcal/mol (1051.3638 without restraints) Performing minimization step: 2746. Total energy = 1051.3882 kcal/mol (1051.1013 without restraints) Performing minimization step: 2747. Total energy = 1051.1260 kcal/mol (1050.8392 without restraints) Performing minimization step: 2748. Total energy = 1050.8641 kcal/mol (1050.5774 without restraints) Performing minimization step: 2749. Total energy = 1050.6026 kcal/mol (1050.3159 without restraints) Performing minimization step: 2750. Total energy = 1050.3414 kcal/mol (1050.0549 without restraints) Performing minimization step: 2751. Total energy = 1050.0808 kcal/mol (1049.7942 without restraints) Performing minimization step: 2752. Total energy = 1049.8202 kcal/mol (1049.5337 without restraints) Performing minimization step: 2753. Total energy = 1049.5599 kcal/mol (1049.2735 without restraints) Performing minimization step: 2754. Total energy = 1049.3000 kcal/mol (1049.0136 without restraints) Performing minimization step: 2755. Total energy = 1049.0403 kcal/mol (1048.7540 without restraints) Performing minimization step: 2756. Total energy = 1048.7810 kcal/mol (1048.4947 without restraints) Performing minimization step: 2757. Total energy = 1048.5220 kcal/mol (1048.2358 without restraints) Performing minimization step: 2758. Total energy = 1048.2637 kcal/mol (1047.9776 without restraints) Performing minimization step: 2759. Total energy = 1048.0053 kcal/mol (1047.7193 without restraints) Performing minimization step: 2760. Total energy = 1047.7473 kcal/mol (1047.4613 without restraints) Performing minimization step: 2761. Total energy = 1047.4895 kcal/mol (1047.2036 without restraints) Performing minimization step: 2762. Total energy = 1047.2321 kcal/mol (1046.9462 without restraints) Performing minimization step: 2763. Total energy = 1046.9750 kcal/mol (1046.6892 without restraints) Performing minimization step: 2764. Total energy = 1046.7182 kcal/mol (1046.4324 without restraints) Performing minimization step: 2765. Total energy = 1046.4617 kcal/mol (1046.1760 without restraints) Performing minimization step: 2766. Total energy = 1046.2059 kcal/mol (1045.9203 without restraints) Performing minimization step: 2767. Total energy = 1045.9500 kcal/mol (1045.6645 without restraints) Performing minimization step: 2768. Total energy = 1045.6945 kcal/mol (1045.4090 without restraints) Performing minimization step: 2769. Total energy = 1045.4393 kcal/mol (1045.1540 without restraints) Performing minimization step: 2770. Total energy = 1045.1845 kcal/mol (1044.8991 without restraints) Performing minimization step: 2771. Total energy = 1044.9301 kcal/mol (1044.6447 without restraints) Performing minimization step: 2772. Total energy = 1044.6758 kcal/mol (1044.3906 without restraints) Performing minimization step: 2773. Total energy = 1044.4218 kcal/mol (1044.1366 without restraints) Performing minimization step: 2774. Total energy = 1044.1683 kcal/mol (1043.8832 without restraints) Performing minimization step: 2775. Total energy = 1043.9150 kcal/mol (1043.6299 without restraints) Performing minimization step: 2776. Total energy = 1043.6619 kcal/mol (1043.3769 without restraints) Performing minimization step: 2777. Total energy = 1043.4091 kcal/mol (1043.1242 without restraints) Performing minimization step: 2778. Total energy = 1043.1570 kcal/mol (1042.8721 without restraints) Performing minimization step: 2779. Total energy = 1042.9051 kcal/mol (1042.6203 without restraints) Performing minimization step: 2780. Total energy = 1042.6535 kcal/mol (1042.3687 without restraints) Performing minimization step: 2781. Total energy = 1042.4018 kcal/mol (1042.1171 without restraints) Performing minimization step: 2782. Total energy = 1042.1506 kcal/mol (1041.8660 without restraints) Performing minimization step: 2783. Total energy = 1041.8997 kcal/mol (1041.6151 without restraints) Performing minimization step: 2784. Total energy = 1041.6491 kcal/mol (1041.3646 without restraints) Performing minimization step: 2785. Total energy = 1041.3988 kcal/mol (1041.1143 without restraints) Performing minimization step: 2786. Total energy = 1041.1488 kcal/mol (1040.8644 without restraints) Performing minimization step: 2787. Total energy = 1040.8991 kcal/mol (1040.6148 without restraints) Performing minimization step: 2788. Total energy = 1040.6498 kcal/mol (1040.3656 without restraints) Performing minimization step: 2789. Total energy = 1040.4008 kcal/mol (1040.1166 without restraints) Performing minimization step: 2790. Total energy = 1040.1520 kcal/mol (1039.8678 without restraints) Performing minimization step: 2791. Total energy = 1039.9035 kcal/mol (1039.6194 without restraints) Performing minimization step: 2792. Total energy = 1039.6554 kcal/mol (1039.3713 without restraints) Performing minimization step: 2793. Total energy = 1039.4074 kcal/mol (1039.1233 without restraints) Performing minimization step: 2794. Total energy = 1039.1594 kcal/mol (1038.8755 without restraints) Performing minimization step: 2795. Total energy = 1038.9122 kcal/mol (1038.6283 without restraints) Performing minimization step: 2796. Total energy = 1038.6652 kcal/mol (1038.3813 without restraints) Performing minimization step: 2797. Total energy = 1038.4185 kcal/mol (1038.1347 without restraints) Performing minimization step: 2798. Total energy = 1038.1721 kcal/mol (1037.8884 without restraints) Performing minimization step: 2799. Total energy = 1037.9260 kcal/mol (1037.6424 without restraints) Performing minimization step: 2800. Total energy = 1037.6802 kcal/mol (1037.3966 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 1037.4347 kcal/mol (1037.1512 without restraints) Performing minimization step: 2802. Total energy = 1037.1898 kcal/mol (1036.9063 without restraints) Performing minimization step: 2803. Total energy = 1036.9446 kcal/mol (1036.6612 without restraints) Performing minimization step: 2804. Total energy = 1036.7000 kcal/mol (1036.4166 without restraints) Performing minimization step: 2805. Total energy = 1036.4557 kcal/mol (1036.1724 without restraints) Performing minimization step: 2806. Total energy = 1036.2117 kcal/mol (1035.9284 without restraints) Performing minimization step: 2807. Total energy = 1035.9681 kcal/mol (1035.6851 without restraints) Performing minimization step: 2808. Total energy = 1035.7250 kcal/mol (1035.4419 without restraints) Performing minimization step: 2809. Total energy = 1035.4819 kcal/mol (1035.1988 without restraints) Performing minimization step: 2810. Total energy = 1035.2391 kcal/mol (1034.9560 without restraints) Performing minimization step: 2811. Total energy = 1034.9965 kcal/mol (1034.7135 without restraints) Performing minimization step: 2812. Total energy = 1034.7542 kcal/mol (1034.4713 without restraints) Performing minimization step: 2813. Total energy = 1034.5123 kcal/mol (1034.2294 without restraints) Performing minimization step: 2814. Total energy = 1034.2708 kcal/mol (1033.9880 without restraints) Performing minimization step: 2815. Total energy = 1034.0294 kcal/mol (1033.7467 without restraints) Performing minimization step: 2816. Total energy = 1033.7884 kcal/mol (1033.5056 without restraints) Performing minimization step: 2817. Total energy = 1033.5476 kcal/mol (1033.2649 without restraints) Performing minimization step: 2818. Total energy = 1033.3071 kcal/mol (1033.0245 without restraints) Performing minimization step: 2819. Total energy = 1033.0669 kcal/mol (1032.7844 without restraints) Performing minimization step: 2820. Total energy = 1032.8270 kcal/mol (1032.5445 without restraints) Performing minimization step: 2821. Total energy = 1032.5873 kcal/mol (1032.3049 without restraints) Performing minimization step: 2822. Total energy = 1032.3482 kcal/mol (1032.0659 without restraints) Performing minimization step: 2823. Total energy = 1032.1092 kcal/mol (1031.8269 without restraints) Performing minimization step: 2824. Total energy = 1031.8705 kcal/mol (1031.5882 without restraints) Performing minimization step: 2825. Total energy = 1031.6320 kcal/mol (1031.3498 without restraints) Performing minimization step: 2826. Total energy = 1031.3938 kcal/mol (1031.1116 without restraints) Performing minimization step: 2827. Total energy = 1031.1559 kcal/mol (1030.8738 without restraints) Performing minimization step: 2828. Total energy = 1030.9183 kcal/mol (1030.6362 without restraints) Performing minimization step: 2829. Total energy = 1030.6810 kcal/mol (1030.3989 without restraints) Performing minimization step: 2830. Total energy = 1030.4439 kcal/mol (1030.1619 without restraints) Performing minimization step: 2831. Total energy = 1030.2072 kcal/mol (1029.9252 without restraints) Performing minimization step: 2832. Total energy = 1029.9711 kcal/mol (1029.6893 without restraints) Performing minimization step: 2833. Total energy = 1029.7350 kcal/mol (1029.4532 without restraints) Performing minimization step: 2834. Total energy = 1029.4991 kcal/mol (1029.2174 without restraints) Performing minimization step: 2835. Total energy = 1029.2637 kcal/mol (1028.9820 without restraints) Performing minimization step: 2836. Total energy = 1029.0284 kcal/mol (1028.7467 without restraints) Performing minimization step: 2837. Total energy = 1028.7933 kcal/mol (1028.5117 without restraints) Performing minimization step: 2838. Total energy = 1028.5586 kcal/mol (1028.2770 without restraints) Performing minimization step: 2839. Total energy = 1028.3241 kcal/mol (1028.0426 without restraints) Performing minimization step: 2840. Total energy = 1028.0899 kcal/mol (1027.8084 without restraints) Performing minimization step: 2841. Total energy = 1027.8559 kcal/mol (1027.5745 without restraints) Performing minimization step: 2842. Total energy = 1027.6223 kcal/mol (1027.3409 without restraints) Performing minimization step: 2843. Total energy = 1027.3889 kcal/mol (1027.1076 without restraints) Performing minimization step: 2844. Total energy = 1027.1559 kcal/mol (1026.8746 without restraints) Performing minimization step: 2845. Total energy = 1026.9235 kcal/mol (1026.6423 without restraints) Performing minimization step: 2846. Total energy = 1026.6909 kcal/mol (1026.4096 without restraints) Performing minimization step: 2847. Total energy = 1026.4586 kcal/mol (1026.1775 without restraints) Performing minimization step: 2848. Total energy = 1026.2268 kcal/mol (1025.9457 without restraints) Performing minimization step: 2849. Total energy = 1025.9949 kcal/mol (1025.7139 without restraints) Performing minimization step: 2850. Total energy = 1025.7635 kcal/mol (1025.4826 without restraints) Performing minimization step: 2851. Total energy = 1025.5324 kcal/mol (1025.2515 without restraints) Performing minimization step: 2852. Total energy = 1025.3019 kcal/mol (1025.0210 without restraints) Performing minimization step: 2853. Total energy = 1025.0715 kcal/mol (1024.7907 without restraints) Performing minimization step: 2854. Total energy = 1024.8413 kcal/mol (1024.5605 without restraints) Performing minimization step: 2855. Total energy = 1024.6111 kcal/mol (1024.3303 without restraints) Performing minimization step: 2856. Total energy = 1024.3813 kcal/mol (1024.1006 without restraints) Performing minimization step: 2857. Total energy = 1024.1518 kcal/mol (1023.8712 without restraints) Performing minimization step: 2858. Total energy = 1023.9226 kcal/mol (1023.6420 without restraints) Performing minimization step: 2859. Total energy = 1023.6938 kcal/mol (1023.4133 without restraints) Performing minimization step: 2860. Total energy = 1023.4652 kcal/mol (1023.1847 without restraints) Performing minimization step: 2861. Total energy = 1023.2370 kcal/mol (1022.9566 without restraints) Performing minimization step: 2862. Total energy = 1023.0089 kcal/mol (1022.7284 without restraints) Performing minimization step: 2863. Total energy = 1022.7810 kcal/mol (1022.5008 without restraints) Performing minimization step: 2864. Total energy = 1022.5536 kcal/mol (1022.2733 without restraints) Performing minimization step: 2865. Total energy = 1022.3263 kcal/mol (1022.0461 without restraints) Performing minimization step: 2866. Total energy = 1022.0993 kcal/mol (1021.8191 without restraints) Performing minimization step: 2867. Total energy = 1021.8726 kcal/mol (1021.5924 without restraints) Performing minimization step: 2868. Total energy = 1021.6461 kcal/mol (1021.3660 without restraints) Performing minimization step: 2869. Total energy = 1021.4199 kcal/mol (1021.1399 without restraints) Performing minimization step: 2870. Total energy = 1021.1940 kcal/mol (1020.9140 without restraints) Performing minimization step: 2871. Total energy = 1020.9684 kcal/mol (1020.6884 without restraints) Performing minimization step: 2872. Total energy = 1020.7430 kcal/mol (1020.4630 without restraints) Performing minimization step: 2873. Total energy = 1020.5178 kcal/mol (1020.2380 without restraints) Performing minimization step: 2874. Total energy = 1020.2930 kcal/mol (1020.0131 without restraints) Performing minimization step: 2875. Total energy = 1020.0687 kcal/mol (1019.7889 without restraints) Performing minimization step: 2876. Total energy = 1019.8444 kcal/mol (1019.5646 without restraints) Performing minimization step: 2877. Total energy = 1019.6203 kcal/mol (1019.3406 without restraints) Performing minimization step: 2878. Total energy = 1019.3965 kcal/mol (1019.1169 without restraints) Performing minimization step: 2879. Total energy = 1019.1730 kcal/mol (1018.8934 without restraints) Performing minimization step: 2880. Total energy = 1018.9496 kcal/mol (1018.6700 without restraints) Performing minimization step: 2881. Total energy = 1018.7266 kcal/mol (1018.4472 without restraints) Performing minimization step: 2882. Total energy = 1018.5040 kcal/mol (1018.2245 without restraints) Performing minimization step: 2883. Total energy = 1018.2815 kcal/mol (1018.0021 without restraints) Performing minimization step: 2884. Total energy = 1018.0593 kcal/mol (1017.7799 without restraints) Performing minimization step: 2885. Total energy = 1017.8374 kcal/mol (1017.5580 without restraints) Performing minimization step: 2886. Total energy = 1017.6156 kcal/mol (1017.3363 without restraints) Performing minimization step: 2887. Total energy = 1017.3942 kcal/mol (1017.1150 without restraints) Performing minimization step: 2888. Total energy = 1017.1731 kcal/mol (1016.8939 without restraints) Performing minimization step: 2889. Total energy = 1016.9523 kcal/mol (1016.6731 without restraints) Performing minimization step: 2890. Total energy = 1016.7317 kcal/mol (1016.4525 without restraints) Performing minimization step: 2891. Total energy = 1016.5112 kcal/mol (1016.2320 without restraints) Performing minimization step: 2892. Total energy = 1016.2913 kcal/mol (1016.0123 without restraints) Performing minimization step: 2893. Total energy = 1016.0715 kcal/mol (1015.7925 without restraints) Performing minimization step: 2894. Total energy = 1015.8519 kcal/mol (1015.5730 without restraints) Performing minimization step: 2895. Total energy = 1015.6326 kcal/mol (1015.3537 without restraints) Performing minimization step: 2896. Total energy = 1015.4136 kcal/mol (1015.1347 without restraints) Performing minimization step: 2897. Total energy = 1015.1946 kcal/mol (1014.9158 without restraints) Performing minimization step: 2898. Total energy = 1014.9761 kcal/mol (1014.6973 without restraints) Performing minimization step: 2899. Total energy = 1014.7577 kcal/mol (1014.4789 without restraints) Performing minimization step: 2900. Total energy = 1014.5397 kcal/mol (1014.2610 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 1014.3219 kcal/mol (1014.0433 without restraints) Performing minimization step: 2902. Total energy = 1014.1047 kcal/mol (1013.8261 without restraints) Performing minimization step: 2903. Total energy = 1013.8875 kcal/mol (1013.6089 without restraints) Performing minimization step: 2904. Total energy = 1013.6705 kcal/mol (1013.3920 without restraints) Performing minimization step: 2905. Total energy = 1013.4538 kcal/mol (1013.1753 without restraints) Performing minimization step: 2906. Total energy = 1013.2373 kcal/mol (1012.9588 without restraints) Performing minimization step: 2907. Total energy = 1013.0213 kcal/mol (1012.7429 without restraints) Performing minimization step: 2908. Total energy = 1012.8054 kcal/mol (1012.5270 without restraints) Performing minimization step: 2909. Total energy = 1012.5897 kcal/mol (1012.3112 without restraints) Performing minimization step: 2910. Total energy = 1012.3741 kcal/mol (1012.0958 without restraints) Performing minimization step: 2911. Total energy = 1012.1591 kcal/mol (1011.8808 without restraints) Performing minimization step: 2912. Total energy = 1011.9444 kcal/mol (1011.6661 without restraints) Performing minimization step: 2913. Total energy = 1011.7299 kcal/mol (1011.4517 without restraints) Performing minimization step: 2914. Total energy = 1011.5155 kcal/mol (1011.2373 without restraints) Performing minimization step: 2915. Total energy = 1011.3015 kcal/mol (1011.0234 without restraints) Performing minimization step: 2916. Total energy = 1011.0877 kcal/mol (1010.8096 without restraints) Performing minimization step: 2917. Total energy = 1010.8740 kcal/mol (1010.5960 without restraints) Performing minimization step: 2918. Total energy = 1010.6606 kcal/mol (1010.3826 without restraints) Performing minimization step: 2919. Total energy = 1010.4475 kcal/mol (1010.1695 without restraints) Performing minimization step: 2920. Total energy = 1010.2346 kcal/mol (1009.9566 without restraints) Performing minimization step: 2921. Total energy = 1010.0219 kcal/mol (1009.7440 without restraints) Performing minimization step: 2922. Total energy = 1009.8095 kcal/mol (1009.5317 without restraints) Performing minimization step: 2923. Total energy = 1009.5973 kcal/mol (1009.3195 without restraints) Performing minimization step: 2924. Total energy = 1009.3854 kcal/mol (1009.1077 without restraints) Performing minimization step: 2925. Total energy = 1009.1738 kcal/mol (1008.8961 without restraints) Performing minimization step: 2926. Total energy = 1008.9624 kcal/mol (1008.6847 without restraints) Performing minimization step: 2927. Total energy = 1008.7513 kcal/mol (1008.4737 without restraints) Performing minimization step: 2928. Total energy = 1008.5404 kcal/mol (1008.2628 without restraints) Performing minimization step: 2929. Total energy = 1008.3298 kcal/mol (1008.0522 without restraints) Performing minimization step: 2930. Total energy = 1008.1196 kcal/mol (1007.8420 without restraints) Performing minimization step: 2931. Total energy = 1007.9092 kcal/mol (1007.6317 without restraints) Performing minimization step: 2932. Total energy = 1007.6993 kcal/mol (1007.4218 without restraints) Performing minimization step: 2933. Total energy = 1007.4898 kcal/mol (1007.2124 without restraints) Performing minimization step: 2934. Total energy = 1007.2804 kcal/mol (1007.0030 without restraints) Performing minimization step: 2935. Total energy = 1007.0711 kcal/mol (1006.7938 without restraints) Performing minimization step: 2936. Total energy = 1006.8622 kcal/mol (1006.5849 without restraints) Performing minimization step: 2937. Total energy = 1006.6535 kcal/mol (1006.3763 without restraints) Performing minimization step: 2938. Total energy = 1006.4451 kcal/mol (1006.1678 without restraints) Performing minimization step: 2939. Total energy = 1006.2369 kcal/mol (1005.9597 without restraints) Performing minimization step: 2940. Total energy = 1006.0289 kcal/mol (1005.7518 without restraints) Performing minimization step: 2941. Total energy = 1005.8212 kcal/mol (1005.5441 without restraints) Performing minimization step: 2942. Total energy = 1005.6138 kcal/mol (1005.3367 without restraints) Performing minimization step: 2943. Total energy = 1005.4066 kcal/mol (1005.1297 without restraints) Performing minimization step: 2944. Total energy = 1005.1998 kcal/mol (1004.9227 without restraints) Performing minimization step: 2945. Total energy = 1004.9930 kcal/mol (1004.7160 without restraints) Performing minimization step: 2946. Total energy = 1004.7865 kcal/mol (1004.5095 without restraints) Performing minimization step: 2947. Total energy = 1004.5803 kcal/mol (1004.3033 without restraints) Performing minimization step: 2948. Total energy = 1004.3742 kcal/mol (1004.0973 without restraints) Performing minimization step: 2949. Total energy = 1004.1685 kcal/mol (1003.8916 without restraints) Performing minimization step: 2950. Total energy = 1003.9629 kcal/mol (1003.6861 without restraints) Performing minimization step: 2951. Total energy = 1003.7576 kcal/mol (1003.4808 without restraints) Performing minimization step: 2952. Total energy = 1003.5530 kcal/mol (1003.2762 without restraints) Performing minimization step: 2953. Total energy = 1003.3482 kcal/mol (1003.0714 without restraints) Performing minimization step: 2954. Total energy = 1003.1436 kcal/mol (1002.8669 without restraints) Performing minimization step: 2955. Total energy = 1002.9392 kcal/mol (1002.6626 without restraints) Performing minimization step: 2956. Total energy = 1002.7351 kcal/mol (1002.4585 without restraints) Performing minimization step: 2957. Total energy = 1002.5315 kcal/mol (1002.2549 without restraints) Performing minimization step: 2958. Total energy = 1002.3278 kcal/mol (1002.0513 without restraints) Performing minimization step: 2959. Total energy = 1002.1242 kcal/mol (1001.8477 without restraints) Performing minimization step: 2960. Total energy = 1001.9211 kcal/mol (1001.6446 without restraints) Performing minimization step: 2961. Total energy = 1001.7181 kcal/mol (1001.4417 without restraints) Performing minimization step: 2962. Total energy = 1001.5154 kcal/mol (1001.2390 without restraints) Performing minimization step: 2963. Total energy = 1001.3130 kcal/mol (1001.0366 without restraints) Performing minimization step: 2964. Total energy = 1001.1108 kcal/mol (1000.8344 without restraints) Performing minimization step: 2965. Total energy = 1000.9088 kcal/mol (1000.6324 without restraints) Performing minimization step: 2966. Total energy = 1000.7071 kcal/mol (1000.4309 without restraints) Performing minimization step: 2967. Total energy = 1000.5057 kcal/mol (1000.2294 without restraints) Performing minimization step: 2968. Total energy = 1000.3045 kcal/mol (1000.0282 without restraints) Performing minimization step: 2969. Total energy = 1000.1035 kcal/mol (999.8273 without restraints) Performing minimization step: 2970. Total energy = 999.9027 kcal/mol (999.6265 without restraints) Performing minimization step: 2971. Total energy = 999.7021 kcal/mol (999.4259 without restraints) Performing minimization step: 2972. Total energy = 999.5019 kcal/mol (999.2258 without restraints) Performing minimization step: 2973. Total energy = 999.3018 kcal/mol (999.0257 without restraints) Performing minimization step: 2974. Total energy = 999.1019 kcal/mol (998.8258 without restraints) Performing minimization step: 2975. Total energy = 998.9021 kcal/mol (998.6260 without restraints) Performing minimization step: 2976. Total energy = 998.7026 kcal/mol (998.4266 without restraints) Performing minimization step: 2977. Total energy = 998.5032 kcal/mol (998.2272 without restraints) Performing minimization step: 2978. Total energy = 998.3042 kcal/mol (998.0283 without restraints) Performing minimization step: 2979. Total energy = 998.1056 kcal/mol (997.8297 without restraints) Performing minimization step: 2980. Total energy = 997.9072 kcal/mol (997.6314 without restraints) Performing minimization step: 2981. Total energy = 997.7091 kcal/mol (997.4332 without restraints) Performing minimization step: 2982. Total energy = 997.5109 kcal/mol (997.2350 without restraints) Performing minimization step: 2983. Total energy = 997.3134 kcal/mol (997.0376 without restraints) Performing minimization step: 2984. Total energy = 997.1158 kcal/mol (996.8401 without restraints) Performing minimization step: 2985. Total energy = 996.9185 kcal/mol (996.6427 without restraints) Performing minimization step: 2986. Total energy = 996.7213 kcal/mol (996.4456 without restraints) Performing minimization step: 2987. Total energy = 996.5244 kcal/mol (996.2487 without restraints) Performing minimization step: 2988. Total energy = 996.3277 kcal/mol (996.0520 without restraints) Performing minimization step: 2989. Total energy = 996.1312 kcal/mol (995.8556 without restraints) Performing minimization step: 2990. Total energy = 995.9350 kcal/mol (995.6593 without restraints) Performing minimization step: 2991. Total energy = 995.7389 kcal/mol (995.4634 without restraints) Performing minimization step: 2992. Total energy = 995.5431 kcal/mol (995.2676 without restraints) Performing minimization step: 2993. Total energy = 995.3476 kcal/mol (995.0720 without restraints) Performing minimization step: 2994. Total energy = 995.1522 kcal/mol (994.8767 without restraints) Performing minimization step: 2995. Total energy = 994.9571 kcal/mol (994.6816 without restraints) Performing minimization step: 2996. Total energy = 994.7622 kcal/mol (994.4867 without restraints) Performing minimization step: 2997. Total energy = 994.5675 kcal/mol (994.2921 without restraints) Performing minimization step: 2998. Total energy = 994.3732 kcal/mol (994.0978 without restraints) Performing minimization step: 2999. Total energy = 994.1789 kcal/mol (993.9036 without restraints) Performing minimization step: 3000. Total energy = 993.9850 kcal/mol (993.7098 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 993.7913 kcal/mol (993.5160 without restraints) Performing minimization step: 3002. Total energy = 993.5977 kcal/mol (993.3224 without restraints) Performing minimization step: 3003. Total energy = 993.4044 kcal/mol (993.1291 without restraints) Performing minimization step: 3004. Total energy = 993.2115 kcal/mol (992.9362 without restraints) Performing minimization step: 3005. Total energy = 993.0186 kcal/mol (992.7433 without restraints) Performing minimization step: 3006. Total energy = 992.8258 kcal/mol (992.5506 without restraints) Performing minimization step: 3007. Total energy = 992.6333 kcal/mol (992.3582 without restraints) Performing minimization step: 3008. Total energy = 992.4411 kcal/mol (992.1659 without restraints) Performing minimization step: 3009. Total energy = 992.2490 kcal/mol (991.9739 without restraints) Performing minimization step: 3010. Total energy = 992.0572 kcal/mol (991.7821 without restraints) Performing minimization step: 3011. Total energy = 991.8659 kcal/mol (991.5908 without restraints) Performing minimization step: 3012. Total energy = 991.6744 kcal/mol (991.3994 without restraints) Performing minimization step: 3013. Total energy = 991.4830 kcal/mol (991.2080 without restraints) Performing minimization step: 3014. Total energy = 991.2921 kcal/mol (991.0171 without restraints) Performing minimization step: 3015. Total energy = 991.1013 kcal/mol (990.8263 without restraints) Performing minimization step: 3016. Total energy = 990.9107 kcal/mol (990.6358 without restraints) Performing minimization step: 3017. Total energy = 990.7204 kcal/mol (990.4455 without restraints) Performing minimization step: 3018. Total energy = 990.5303 kcal/mol (990.2554 without restraints) Performing minimization step: 3019. Total energy = 990.3403 kcal/mol (990.0654 without restraints) Performing minimization step: 3020. Total energy = 990.1506 kcal/mol (989.8757 without restraints) Performing minimization step: 3021. Total energy = 989.9611 kcal/mol (989.6863 without restraints) Performing minimization step: 3022. Total energy = 989.7718 kcal/mol (989.4970 without restraints) Performing minimization step: 3023. Total energy = 989.5827 kcal/mol (989.3079 without restraints) Performing minimization step: 3024. Total energy = 989.3939 kcal/mol (989.1191 without restraints) Performing minimization step: 3025. Total energy = 989.2052 kcal/mol (988.9305 without restraints) Performing minimization step: 3026. Total energy = 989.0168 kcal/mol (988.7421 without restraints) Performing minimization step: 3027. Total energy = 988.8286 kcal/mol (988.5539 without restraints) Performing minimization step: 3028. Total energy = 988.6407 kcal/mol (988.3661 without restraints) Performing minimization step: 3029. Total energy = 988.4530 kcal/mol (988.1784 without restraints) Performing minimization step: 3030. Total energy = 988.2654 kcal/mol (987.9908 without restraints) Performing minimization step: 3031. Total energy = 988.0781 kcal/mol (987.8034 without restraints) Performing minimization step: 3032. Total energy = 987.8910 kcal/mol (987.6165 without restraints) Performing minimization step: 3033. Total energy = 987.7042 kcal/mol (987.4296 without restraints) Performing minimization step: 3034. Total energy = 987.5176 kcal/mol (987.2431 without restraints) Performing minimization step: 3035. Total energy = 987.3311 kcal/mol (987.0565 without restraints) Performing minimization step: 3036. Total energy = 987.1447 kcal/mol (986.8702 without restraints) Performing minimization step: 3037. Total energy = 986.9585 kcal/mol (986.6840 without restraints) Performing minimization step: 3038. Total energy = 986.7726 kcal/mol (986.4981 without restraints) Performing minimization step: 3039. Total energy = 986.5868 kcal/mol (986.3124 without restraints) Performing minimization step: 3040. Total energy = 986.4012 kcal/mol (986.1269 without restraints) Performing minimization step: 3041. Total energy = 986.2160 kcal/mol (985.9415 without restraints) Performing minimization step: 3042. Total energy = 986.0308 kcal/mol (985.7564 without restraints) Performing minimization step: 3043. Total energy = 985.8459 kcal/mol (985.5715 without restraints) Performing minimization step: 3044. Total energy = 985.6613 kcal/mol (985.3870 without restraints) Performing minimization step: 3045. Total energy = 985.4768 kcal/mol (985.2025 without restraints) Performing minimization step: 3046. Total energy = 985.2925 kcal/mol (985.0182 without restraints) Performing minimization step: 3047. Total energy = 985.1081 kcal/mol (984.8338 without restraints) Performing minimization step: 3048. Total energy = 984.9242 kcal/mol (984.6499 without restraints) Performing minimization step: 3049. Total energy = 984.7403 kcal/mol (984.4660 without restraints) Performing minimization step: 3050. Total energy = 984.5569 kcal/mol (984.2827 without restraints) Performing minimization step: 3051. Total energy = 984.3737 kcal/mol (984.0994 without restraints) Performing minimization step: 3052. Total energy = 984.1906 kcal/mol (983.9164 without restraints) Performing minimization step: 3053. Total energy = 984.0077 kcal/mol (983.7335 without restraints) Performing minimization step: 3054. Total energy = 983.8252 kcal/mol (983.5510 without restraints) Performing minimization step: 3055. Total energy = 983.6427 kcal/mol (983.3685 without restraints) Performing minimization step: 3056. Total energy = 983.4604 kcal/mol (983.1862 without restraints) Performing minimization step: 3057. Total energy = 983.2782 kcal/mol (983.0041 without restraints) Performing minimization step: 3058. Total energy = 983.0963 kcal/mol (982.8222 without restraints) Performing minimization step: 3059. Total energy = 982.9146 kcal/mol (982.6405 without restraints) Performing minimization step: 3060. Total energy = 982.7330 kcal/mol (982.4590 without restraints) Performing minimization step: 3061. Total energy = 982.5519 kcal/mol (982.2778 without restraints) Performing minimization step: 3062. Total energy = 982.3707 kcal/mol (982.0967 without restraints) Performing minimization step: 3063. Total energy = 982.1898 kcal/mol (981.9158 without restraints) Performing minimization step: 3064. Total energy = 982.0093 kcal/mol (981.7352 without restraints) Performing minimization step: 3065. Total energy = 981.8287 kcal/mol (981.5547 without restraints) Performing minimization step: 3066. Total energy = 981.6484 kcal/mol (981.3744 without restraints) Performing minimization step: 3067. Total energy = 981.4684 kcal/mol (981.1944 without restraints) Performing minimization step: 3068. Total energy = 981.2889 kcal/mol (981.0151 without restraints) Performing minimization step: 3069. Total energy = 981.1093 kcal/mol (980.8353 without restraints) Performing minimization step: 3070. Total energy = 980.9299 kcal/mol (980.6560 without restraints) Performing minimization step: 3071. Total energy = 980.7507 kcal/mol (980.4768 without restraints) Performing minimization step: 3072. Total energy = 980.5715 kcal/mol (980.2976 without restraints) Performing minimization step: 3073. Total energy = 980.3925 kcal/mol (980.1186 without restraints) Performing minimization step: 3074. Total energy = 980.2137 kcal/mol (979.9399 without restraints) Performing minimization step: 3075. Total energy = 980.0351 kcal/mol (979.7613 without restraints) Performing minimization step: 3076. Total energy = 979.8567 kcal/mol (979.5828 without restraints) Performing minimization step: 3077. Total energy = 979.6784 kcal/mol (979.4046 without restraints) Performing minimization step: 3078. Total energy = 979.5004 kcal/mol (979.2266 without restraints) Performing minimization step: 3079. Total energy = 979.3225 kcal/mol (979.0487 without restraints) Performing minimization step: 3080. Total energy = 979.1448 kcal/mol (978.8710 without restraints) Performing minimization step: 3081. Total energy = 978.9673 kcal/mol (978.6935 without restraints) Performing minimization step: 3082. Total energy = 978.7900 kcal/mol (978.5162 without restraints) Performing minimization step: 3083. Total energy = 978.6128 kcal/mol (978.3391 without restraints) Performing minimization step: 3084. Total energy = 978.4359 kcal/mol (978.1622 without restraints) Performing minimization step: 3085. Total energy = 978.2596 kcal/mol (977.9859 without restraints) Performing minimization step: 3086. Total energy = 978.0835 kcal/mol (977.8098 without restraints) Performing minimization step: 3087. Total energy = 977.9073 kcal/mol (977.6336 without restraints) Performing minimization step: 3088. Total energy = 977.7315 kcal/mol (977.4578 without restraints) Performing minimization step: 3089. Total energy = 977.5555 kcal/mol (977.2818 without restraints) Performing minimization step: 3090. Total energy = 977.3797 kcal/mol (977.1060 without restraints) Performing minimization step: 3091. Total energy = 977.2041 kcal/mol (976.9304 without restraints) Performing minimization step: 3092. Total energy = 977.0288 kcal/mol (976.7552 without restraints) Performing minimization step: 3093. Total energy = 976.8536 kcal/mol (976.5801 without restraints) Performing minimization step: 3094. Total energy = 976.6786 kcal/mol (976.4050 without restraints) Performing minimization step: 3095. Total energy = 976.5037 kcal/mol (976.2301 without restraints) Performing minimization step: 3096. Total energy = 976.3288 kcal/mol (976.0552 without restraints) Performing minimization step: 3097. Total energy = 976.1541 kcal/mol (975.8804 without restraints) Performing minimization step: 3098. Total energy = 975.9797 kcal/mol (975.7061 without restraints) Performing minimization step: 3099. Total energy = 975.8056 kcal/mol (975.5319 without restraints) Performing minimization step: 3100. Total energy = 975.6318 kcal/mol (975.3583 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 975.4580 kcal/mol (975.1845 without restraints) Performing minimization step: 3102. Total energy = 975.2844 kcal/mol (975.0109 without restraints) Performing minimization step: 3103. Total energy = 975.1110 kcal/mol (974.8374 without restraints) Performing minimization step: 3104. Total energy = 974.9377 kcal/mol (974.6642 without restraints) Performing minimization step: 3105. Total energy = 974.7646 kcal/mol (974.4911 without restraints) Performing minimization step: 3106. Total energy = 974.5917 kcal/mol (974.3182 without restraints) Performing minimization step: 3107. Total energy = 974.4187 kcal/mol (974.1452 without restraints) Performing minimization step: 3108. Total energy = 974.2461 kcal/mol (973.9726 without restraints) Performing minimization step: 3109. Total energy = 974.0739 kcal/mol (973.8004 without restraints) Performing minimization step: 3110. Total energy = 973.9017 kcal/mol (973.6282 without restraints) Performing minimization step: 3111. Total energy = 973.7296 kcal/mol (973.4562 without restraints) Performing minimization step: 3112. Total energy = 973.5576 kcal/mol (973.2841 without restraints) Performing minimization step: 3113. Total energy = 973.3859 kcal/mol (973.1125 without restraints) Performing minimization step: 3114. Total energy = 973.2144 kcal/mol (972.9410 without restraints) Performing minimization step: 3115. Total energy = 973.0431 kcal/mol (972.7696 without restraints) Performing minimization step: 3116. Total energy = 972.8719 kcal/mol (972.5985 without restraints) Performing minimization step: 3117. Total energy = 972.7012 kcal/mol (972.4279 without restraints) Performing minimization step: 3118. Total energy = 972.5306 kcal/mol (972.2572 without restraints) Performing minimization step: 3119. Total energy = 972.3600 kcal/mol (972.0866 without restraints) Performing minimization step: 3120. Total energy = 972.1895 kcal/mol (971.9161 without restraints) Performing minimization step: 3121. Total energy = 972.0193 kcal/mol (971.7459 without restraints) Performing minimization step: 3122. Total energy = 971.8492 kcal/mol (971.5758 without restraints) Performing minimization step: 3123. Total energy = 971.6792 kcal/mol (971.4058 without restraints) Performing minimization step: 3124. Total energy = 971.5094 kcal/mol (971.2360 without restraints) Performing minimization step: 3125. Total energy = 971.3398 kcal/mol (971.0664 without restraints) Performing minimization step: 3126. Total energy = 971.1704 kcal/mol (970.8970 without restraints) Performing minimization step: 3127. Total energy = 971.0012 kcal/mol (970.7278 without restraints) Performing minimization step: 3128. Total energy = 970.8321 kcal/mol (970.5587 without restraints) Performing minimization step: 3129. Total energy = 970.6631 kcal/mol (970.3898 without restraints) Performing minimization step: 3130. Total energy = 970.4944 kcal/mol (970.2210 without restraints) Performing minimization step: 3131. Total energy = 970.3258 kcal/mol (970.0524 without restraints) Performing minimization step: 3132. Total energy = 970.1576 kcal/mol (969.8842 without restraints) Performing minimization step: 3133. Total energy = 969.9892 kcal/mol (969.7158 without restraints) Performing minimization step: 3134. Total energy = 969.8210 kcal/mol (969.5477 without restraints) Performing minimization step: 3135. Total energy = 969.6531 kcal/mol (969.3797 without restraints) Performing minimization step: 3136. Total energy = 969.4853 kcal/mol (969.2120 without restraints) Performing minimization step: 3137. Total energy = 969.3177 kcal/mol (969.0444 without restraints) Performing minimization step: 3138. Total energy = 969.1503 kcal/mol (968.8770 without restraints) Performing minimization step: 3139. Total energy = 968.9828 kcal/mol (968.7095 without restraints) Performing minimization step: 3140. Total energy = 968.8157 kcal/mol (968.5424 without restraints) Performing minimization step: 3141. Total energy = 968.6488 kcal/mol (968.3755 without restraints) Performing minimization step: 3142. Total energy = 968.4822 kcal/mol (968.2090 without restraints) Performing minimization step: 3143. Total energy = 968.3157 kcal/mol (968.0424 without restraints) Performing minimization step: 3144. Total energy = 968.1492 kcal/mol (967.8759 without restraints) Performing minimization step: 3145. Total energy = 967.9829 kcal/mol (967.7096 without restraints) Performing minimization step: 3146. Total energy = 967.8170 kcal/mol (967.5437 without restraints) Performing minimization step: 3147. Total energy = 967.6510 kcal/mol (967.3777 without restraints) Performing minimization step: 3148. Total energy = 967.4852 kcal/mol (967.2119 without restraints) Performing minimization step: 3149. Total energy = 967.3195 kcal/mol (967.0462 without restraints) Performing minimization step: 3150. Total energy = 967.1541 kcal/mol (966.8808 without restraints) Performing minimization step: 3151. Total energy = 966.9888 kcal/mol (966.7155 without restraints) Performing minimization step: 3152. Total energy = 966.8236 kcal/mol (966.5503 without restraints) Performing minimization step: 3153. Total energy = 966.6588 kcal/mol (966.3855 without restraints) Performing minimization step: 3154. Total energy = 966.4940 kcal/mol (966.2207 without restraints) Performing minimization step: 3155. Total energy = 966.3294 kcal/mol (966.0561 without restraints) Performing minimization step: 3156. Total energy = 966.1648 kcal/mol (965.8915 without restraints) Performing minimization step: 3157. Total energy = 966.0005 kcal/mol (965.7272 without restraints) Performing minimization step: 3158. Total energy = 965.8363 kcal/mol (965.5630 without restraints) Performing minimization step: 3159. Total energy = 965.6722 kcal/mol (965.3989 without restraints) Performing minimization step: 3160. Total energy = 965.5084 kcal/mol (965.2351 without restraints) Performing minimization step: 3161. Total energy = 965.3447 kcal/mol (965.0714 without restraints) Performing minimization step: 3162. Total energy = 965.1809 kcal/mol (964.9076 without restraints) Performing minimization step: 3163. Total energy = 965.0177 kcal/mol (964.7444 without restraints) Performing minimization step: 3164. Total energy = 964.8547 kcal/mol (964.5814 without restraints) Performing minimization step: 3165. Total energy = 964.6918 kcal/mol (964.4185 without restraints) Performing minimization step: 3166. Total energy = 964.5289 kcal/mol (964.2555 without restraints) Performing minimization step: 3167. Total energy = 964.3661 kcal/mol (964.0928 without restraints) Performing minimization step: 3168. Total energy = 964.2035 kcal/mol (963.9302 without restraints) Performing minimization step: 3169. Total energy = 964.0410 kcal/mol (963.7677 without restraints) Performing minimization step: 3170. Total energy = 963.8787 kcal/mol (963.6053 without restraints) Performing minimization step: 3171. Total energy = 963.7165 kcal/mol (963.4432 without restraints) Performing minimization step: 3172. Total energy = 963.5544 kcal/mol (963.2811 without restraints) Performing minimization step: 3173. Total energy = 963.3924 kcal/mol (963.1191 without restraints) Performing minimization step: 3174. Total energy = 963.2307 kcal/mol (962.9573 without restraints) Performing minimization step: 3175. Total energy = 963.0690 kcal/mol (962.7956 without restraints) Performing minimization step: 3176. Total energy = 962.9075 kcal/mol (962.6342 without restraints) Performing minimization step: 3177. Total energy = 962.7463 kcal/mol (962.4729 without restraints) Performing minimization step: 3178. Total energy = 962.5852 kcal/mol (962.3118 without restraints) Performing minimization step: 3179. Total energy = 962.4242 kcal/mol (962.1509 without restraints) Performing minimization step: 3180. Total energy = 962.2634 kcal/mol (961.9900 without restraints) Performing minimization step: 3181. Total energy = 962.1030 kcal/mol (961.8296 without restraints) Performing minimization step: 3182. Total energy = 961.9424 kcal/mol (961.6691 without restraints) Performing minimization step: 3183. Total energy = 961.7821 kcal/mol (961.5088 without restraints) Performing minimization step: 3184. Total energy = 961.6219 kcal/mol (961.3485 without restraints) Performing minimization step: 3185. Total energy = 961.4619 kcal/mol (961.1886 without restraints) Performing minimization step: 3186. Total energy = 961.3023 kcal/mol (961.0289 without restraints) Performing minimization step: 3187. Total energy = 961.1425 kcal/mol (960.8691 without restraints) Performing minimization step: 3188. Total energy = 960.9825 kcal/mol (960.7091 without restraints) Performing minimization step: 3189. Total energy = 960.8232 kcal/mol (960.5499 without restraints) Performing minimization step: 3190. Total energy = 960.6639 kcal/mol (960.3905 without restraints) Performing minimization step: 3191. Total energy = 960.5047 kcal/mol (960.2313 without restraints) Performing minimization step: 3192. Total energy = 960.3458 kcal/mol (960.0723 without restraints) Performing minimization step: 3193. Total energy = 960.1869 kcal/mol (959.9134 without restraints) Performing minimization step: 3194. Total energy = 960.0281 kcal/mol (959.7547 without restraints) Performing minimization step: 3195. Total energy = 959.8695 kcal/mol (959.5961 without restraints) Performing minimization step: 3196. Total energy = 959.7111 kcal/mol (959.4376 without restraints) Performing minimization step: 3197. Total energy = 959.5528 kcal/mol (959.2793 without restraints) Performing minimization step: 3198. Total energy = 959.3946 kcal/mol (959.1211 without restraints) Performing minimization step: 3199. Total energy = 959.2366 kcal/mol (958.9631 without restraints) Performing minimization step: 3200. Total energy = 959.0787 kcal/mol (958.8052 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 958.9210 kcal/mol (958.6475 without restraints) Performing minimization step: 3202. Total energy = 958.7634 kcal/mol (958.4899 without restraints) Performing minimization step: 3203. Total energy = 958.6063 kcal/mol (958.3327 without restraints) Performing minimization step: 3204. Total energy = 958.4489 kcal/mol (958.1754 without restraints) Performing minimization step: 3205. Total energy = 958.2921 kcal/mol (958.0186 without restraints) Performing minimization step: 3206. Total energy = 958.1350 kcal/mol (957.8614 without restraints) Performing minimization step: 3207. Total energy = 957.9783 kcal/mol (957.7047 without restraints) Performing minimization step: 3208. Total energy = 957.8215 kcal/mol (957.5480 without restraints) Performing minimization step: 3209. Total energy = 957.6652 kcal/mol (957.3916 without restraints) Performing minimization step: 3210. Total energy = 957.5087 kcal/mol (957.2352 without restraints) Performing minimization step: 3211. Total energy = 957.3524 kcal/mol (957.0788 without restraints) Performing minimization step: 3212. Total energy = 957.1964 kcal/mol (956.9228 without restraints) Performing minimization step: 3213. Total energy = 957.0404 kcal/mol (956.7668 without restraints) Performing minimization step: 3214. Total energy = 956.8845 kcal/mol (956.6108 without restraints) Performing minimization step: 3215. Total energy = 956.7287 kcal/mol (956.4550 without restraints) Performing minimization step: 3216. Total energy = 956.5730 kcal/mol (956.2994 without restraints) Performing minimization step: 3217. Total energy = 956.4175 kcal/mol (956.1439 without restraints) Performing minimization step: 3218. Total energy = 956.2622 kcal/mol (955.9885 without restraints) Performing minimization step: 3219. Total energy = 956.1070 kcal/mol (955.8333 without restraints) Performing minimization step: 3220. Total energy = 955.9519 kcal/mol (955.6782 without restraints) Performing minimization step: 3221. Total energy = 955.7972 kcal/mol (955.5235 without restraints) Performing minimization step: 3222. Total energy = 955.6426 kcal/mol (955.3689 without restraints) Performing minimization step: 3223. Total energy = 955.4879 kcal/mol (955.2142 without restraints) Performing minimization step: 3224. Total energy = 955.3332 kcal/mol (955.0594 without restraints) Performing minimization step: 3225. Total energy = 955.1788 kcal/mol (954.9050 without restraints) Performing minimization step: 3226. Total energy = 955.0245 kcal/mol (954.7507 without restraints) Performing minimization step: 3227. Total energy = 954.8702 kcal/mol (954.5964 without restraints) Performing minimization step: 3228. Total energy = 954.7164 kcal/mol (954.4426 without restraints) Performing minimization step: 3229. Total energy = 954.5625 kcal/mol (954.2887 without restraints) Performing minimization step: 3230. Total energy = 954.4088 kcal/mol (954.1350 without restraints) Performing minimization step: 3231. Total energy = 954.2552 kcal/mol (953.9813 without restraints) Performing minimization step: 3232. Total energy = 954.1018 kcal/mol (953.8280 without restraints) Performing minimization step: 3233. Total energy = 953.9485 kcal/mol (953.6747 without restraints) Performing minimization step: 3234. Total energy = 953.7953 kcal/mol (953.5214 without restraints) Performing minimization step: 3235. Total energy = 953.6422 kcal/mol (953.3683 without restraints) Performing minimization step: 3236. Total energy = 953.4894 kcal/mol (953.2156 without restraints) Performing minimization step: 3237. Total energy = 953.3366 kcal/mol (953.0627 without restraints) Performing minimization step: 3238. Total energy = 953.1839 kcal/mol (952.9100 without restraints) Performing minimization step: 3239. Total energy = 953.0313 kcal/mol (952.7574 without restraints) Performing minimization step: 3240. Total energy = 952.8789 kcal/mol (952.6050 without restraints) Performing minimization step: 3241. Total energy = 952.7266 kcal/mol (952.4527 without restraints) Performing minimization step: 3242. Total energy = 952.5744 kcal/mol (952.3005 without restraints) Performing minimization step: 3243. Total energy = 952.4224 kcal/mol (952.1484 without restraints) Performing minimization step: 3244. Total energy = 952.2704 kcal/mol (951.9964 without restraints) Performing minimization step: 3245. Total energy = 952.1186 kcal/mol (951.8446 without restraints) Performing minimization step: 3246. Total energy = 951.9670 kcal/mol (951.6929 without restraints) Performing minimization step: 3247. Total energy = 951.8154 kcal/mol (951.5414 without restraints) Performing minimization step: 3248. Total energy = 951.6642 kcal/mol (951.3901 without restraints) Performing minimization step: 3249. Total energy = 951.5129 kcal/mol (951.2388 without restraints) Performing minimization step: 3250. Total energy = 951.3619 kcal/mol (951.0879 without restraints) Performing minimization step: 3251. Total energy = 951.2109 kcal/mol (950.9368 without restraints) Performing minimization step: 3252. Total energy = 951.0600 kcal/mol (950.7859 without restraints) Performing minimization step: 3253. Total energy = 950.9090 kcal/mol (950.6349 without restraints) Performing minimization step: 3254. Total energy = 950.7584 kcal/mol (950.4842 without restraints) Performing minimization step: 3255. Total energy = 950.6078 kcal/mol (950.3336 without restraints) Performing minimization step: 3256. Total energy = 950.4571 kcal/mol (950.1830 without restraints) Performing minimization step: 3257. Total energy = 950.3069 kcal/mol (950.0327 without restraints) Performing minimization step: 3258. Total energy = 950.1567 kcal/mol (949.8825 without restraints) Performing minimization step: 3259. Total energy = 950.0067 kcal/mol (949.7324 without restraints) Performing minimization step: 3260. Total energy = 949.8568 kcal/mol (949.5825 without restraints) Performing minimization step: 3261. Total energy = 949.7070 kcal/mol (949.4327 without restraints) Performing minimization step: 3262. Total energy = 949.5574 kcal/mol (949.2831 without restraints) Performing minimization step: 3263. Total energy = 949.4079 kcal/mol (949.1336 without restraints) Performing minimization step: 3264. Total energy = 949.2585 kcal/mol (948.9841 without restraints) Performing minimization step: 3265. Total energy = 949.1092 kcal/mol (948.8348 without restraints) Performing minimization step: 3266. Total energy = 948.9600 kcal/mol (948.6856 without restraints) Performing minimization step: 3267. Total energy = 948.8111 kcal/mol (948.5367 without restraints) Performing minimization step: 3268. Total energy = 948.6624 kcal/mol (948.3880 without restraints) Performing minimization step: 3269. Total energy = 948.5136 kcal/mol (948.2392 without restraints) Performing minimization step: 3270. Total energy = 948.3650 kcal/mol (948.0905 without restraints) Performing minimization step: 3271. Total energy = 948.2164 kcal/mol (947.9419 without restraints) Performing minimization step: 3272. Total energy = 948.0679 kcal/mol (947.7934 without restraints) Performing minimization step: 3273. Total energy = 947.9196 kcal/mol (947.6450 without restraints) Performing minimization step: 3274. Total energy = 947.7713 kcal/mol (947.4968 without restraints) Performing minimization step: 3275. Total energy = 947.6230 kcal/mol (947.3484 without restraints) Performing minimization step: 3276. Total energy = 947.4750 kcal/mol (947.2004 without restraints) Performing minimization step: 3277. Total energy = 947.3273 kcal/mol (947.0527 without restraints) Performing minimization step: 3278. Total energy = 947.1797 kcal/mol (946.9052 without restraints) Performing minimization step: 3279. Total energy = 947.0322 kcal/mol (946.7575 without restraints) Performing minimization step: 3280. Total energy = 946.8844 kcal/mol (946.6097 without restraints) Performing minimization step: 3281. Total energy = 946.7370 kcal/mol (946.4623 without restraints) Performing minimization step: 3282. Total energy = 946.5897 kcal/mol (946.3150 without restraints) Performing minimization step: 3283. Total energy = 946.4423 kcal/mol (946.1675 without restraints) Performing minimization step: 3284. Total energy = 946.2953 kcal/mol (946.0205 without restraints) Performing minimization step: 3285. Total energy = 946.1481 kcal/mol (945.8733 without restraints) Performing minimization step: 3286. Total energy = 946.0013 kcal/mol (945.7265 without restraints) Performing minimization step: 3287. Total energy = 945.8546 kcal/mol (945.5798 without restraints) Performing minimization step: 3288. Total energy = 945.7080 kcal/mol (945.4332 without restraints) Performing minimization step: 3289. Total energy = 945.5616 kcal/mol (945.2867 without restraints) Performing minimization step: 3290. Total energy = 945.4152 kcal/mol (945.1403 without restraints) Performing minimization step: 3291. Total energy = 945.2692 kcal/mol (944.9943 without restraints) Performing minimization step: 3292. Total energy = 945.1231 kcal/mol (944.8481 without restraints) Performing minimization step: 3293. Total energy = 944.9771 kcal/mol (944.7021 without restraints) Performing minimization step: 3294. Total energy = 944.8316 kcal/mol (944.5566 without restraints) Performing minimization step: 3295. Total energy = 944.6858 kcal/mol (944.4107 without restraints) Performing minimization step: 3296. Total energy = 944.5401 kcal/mol (944.2650 without restraints) Performing minimization step: 3297. Total energy = 944.3945 kcal/mol (944.1195 without restraints) Performing minimization step: 3298. Total energy = 944.2491 kcal/mol (943.9740 without restraints) Performing minimization step: 3299. Total energy = 944.1042 kcal/mol (943.8291 without restraints) Performing minimization step: 3300. Total energy = 943.9590 kcal/mol (943.6838 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 943.8139 kcal/mol (943.5387 without restraints) Performing minimization step: 3302. Total energy = 943.6689 kcal/mol (943.3936 without restraints) Performing minimization step: 3303. Total energy = 943.5241 kcal/mol (943.2490 without restraints) Performing minimization step: 3304. Total energy = 943.3796 kcal/mol (943.1044 without restraints) Performing minimization step: 3305. Total energy = 943.2350 kcal/mol (942.9597 without restraints) Performing minimization step: 3306. Total energy = 943.0905 kcal/mol (942.8151 without restraints) Performing minimization step: 3307. Total energy = 942.9460 kcal/mol (942.6706 without restraints) Performing minimization step: 3308. Total energy = 942.8015 kcal/mol (942.5261 without restraints) Performing minimization step: 3309. Total energy = 942.6572 kcal/mol (942.3818 without restraints) Performing minimization step: 3310. Total energy = 942.5131 kcal/mol (942.2376 without restraints) Performing minimization step: 3311. Total energy = 942.3690 kcal/mol (942.0936 without restraints) Performing minimization step: 3312. Total energy = 942.2251 kcal/mol (941.9497 without restraints) Performing minimization step: 3313. Total energy = 942.0813 kcal/mol (941.8058 without restraints) Performing minimization step: 3314. Total energy = 941.9376 kcal/mol (941.6621 without restraints) Performing minimization step: 3315. Total energy = 941.7943 kcal/mol (941.5188 without restraints) Performing minimization step: 3316. Total energy = 941.6508 kcal/mol (941.3753 without restraints) Performing minimization step: 3317. Total energy = 941.5075 kcal/mol (941.2319 without restraints) Performing minimization step: 3318. Total energy = 941.3642 kcal/mol (941.0886 without restraints) Performing minimization step: 3319. Total energy = 941.2211 kcal/mol (940.9454 without restraints) Performing minimization step: 3320. Total energy = 941.0781 kcal/mol (940.8024 without restraints) Performing minimization step: 3321. Total energy = 940.9351 kcal/mol (940.6594 without restraints) Performing minimization step: 3322. Total energy = 940.7923 kcal/mol (940.5165 without restraints) Performing minimization step: 3323. Total energy = 940.6496 kcal/mol (940.3738 without restraints) Performing minimization step: 3324. Total energy = 940.5069 kcal/mol (940.2311 without restraints) Performing minimization step: 3325. Total energy = 940.3644 kcal/mol (940.0886 without restraints) Performing minimization step: 3326. Total energy = 940.2220 kcal/mol (939.9461 without restraints) Performing minimization step: 3327. Total energy = 940.0797 kcal/mol (939.8038 without restraints) Performing minimization step: 3328. Total energy = 939.9375 kcal/mol (939.6616 without restraints) Performing minimization step: 3329. Total energy = 939.7957 kcal/mol (939.5198 without restraints) Performing minimization step: 3330. Total energy = 939.6538 kcal/mol (939.3779 without restraints) Performing minimization step: 3331. Total energy = 939.5119 kcal/mol (939.2359 without restraints) Performing minimization step: 3332. Total energy = 939.3702 kcal/mol (939.0941 without restraints) Performing minimization step: 3333. Total energy = 939.2287 kcal/mol (938.9526 without restraints) Performing minimization step: 3334. Total energy = 939.0871 kcal/mol (938.8110 without restraints) Performing minimization step: 3335. Total energy = 938.9457 kcal/mol (938.6695 without restraints) Performing minimization step: 3336. Total energy = 938.8044 kcal/mol (938.5283 without restraints) Performing minimization step: 3337. Total energy = 938.6632 kcal/mol (938.3870 without restraints) Performing minimization step: 3338. Total energy = 938.5221 kcal/mol (938.2458 without restraints) Performing minimization step: 3339. Total energy = 938.3810 kcal/mol (938.1047 without restraints) Performing minimization step: 3340. Total energy = 938.2398 kcal/mol (937.9635 without restraints) Performing minimization step: 3341. Total energy = 938.0992 kcal/mol (937.8228 without restraints) Performing minimization step: 3342. Total energy = 937.9584 kcal/mol (937.6820 without restraints) Performing minimization step: 3343. Total energy = 937.8178 kcal/mol (937.5415 without restraints) Performing minimization step: 3344. Total energy = 937.6773 kcal/mol (937.4009 without restraints) Performing minimization step: 3345. Total energy = 937.5369 kcal/mol (937.2604 without restraints) Performing minimization step: 3346. Total energy = 937.3965 kcal/mol (937.1200 without restraints) Performing minimization step: 3347. Total energy = 937.2562 kcal/mol (936.9797 without restraints) Performing minimization step: 3348. Total energy = 937.1163 kcal/mol (936.8397 without restraints) Performing minimization step: 3349. Total energy = 936.9762 kcal/mol (936.6996 without restraints) Performing minimization step: 3350. Total energy = 936.8365 kcal/mol (936.5598 without restraints) Performing minimization step: 3351. Total energy = 936.6966 kcal/mol (936.4200 without restraints) Performing minimization step: 3352. Total energy = 936.5568 kcal/mol (936.2799 without restraints) Performing minimization step: 3353. Total energy = 936.4170 kcal/mol (936.1402 without restraints) Performing minimization step: 3354. Total energy = 936.2776 kcal/mol (936.0008 without restraints) Performing minimization step: 3355. Total energy = 936.1382 kcal/mol (935.8614 without restraints) Performing minimization step: 3356. Total energy = 935.9990 kcal/mol (935.7222 without restraints) Performing minimization step: 3357. Total energy = 935.8597 kcal/mol (935.5829 without restraints) Performing minimization step: 3358. Total energy = 935.7205 kcal/mol (935.4436 without restraints) Performing minimization step: 3359. Total energy = 935.5815 kcal/mol (935.3045 without restraints) Performing minimization step: 3360. Total energy = 935.4425 kcal/mol (935.1655 without restraints) Performing minimization step: 3361. Total energy = 935.3036 kcal/mol (935.0266 without restraints) Performing minimization step: 3362. Total energy = 935.1648 kcal/mol (934.8878 without restraints) Performing minimization step: 3363. Total energy = 935.0261 kcal/mol (934.7491 without restraints) Performing minimization step: 3364. Total energy = 934.8878 kcal/mol (934.6108 without restraints) Performing minimization step: 3365. Total energy = 934.7494 kcal/mol (934.4723 without restraints) Performing minimization step: 3366. Total energy = 934.6110 kcal/mol (934.3338 without restraints) Performing minimization step: 3367. Total energy = 934.4726 kcal/mol (934.1954 without restraints) Performing minimization step: 3368. Total energy = 934.3344 kcal/mol (934.0572 without restraints) Performing minimization step: 3369. Total energy = 934.1963 kcal/mol (933.9190 without restraints) Performing minimization step: 3370. Total energy = 934.0585 kcal/mol (933.7811 without restraints) Performing minimization step: 3371. Total energy = 933.9207 kcal/mol (933.6433 without restraints) Performing minimization step: 3372. Total energy = 933.7827 kcal/mol (933.5052 without restraints) Performing minimization step: 3373. Total energy = 933.6449 kcal/mol (933.3674 without restraints) Performing minimization step: 3374. Total energy = 933.5076 kcal/mol (933.2301 without restraints) Performing minimization step: 3375. Total energy = 933.3700 kcal/mol (933.0925 without restraints) Performing minimization step: 3376. Total energy = 933.2326 kcal/mol (932.9550 without restraints) Performing minimization step: 3377. Total energy = 933.0952 kcal/mol (932.8176 without restraints) Performing minimization step: 3378. Total energy = 932.9579 kcal/mol (932.6803 without restraints) Performing minimization step: 3379. Total energy = 932.8207 kcal/mol (932.5431 without restraints) Performing minimization step: 3380. Total energy = 932.6836 kcal/mol (932.4059 without restraints) Performing minimization step: 3381. Total energy = 932.5467 kcal/mol (932.2691 without restraints) Performing minimization step: 3382. Total energy = 932.4099 kcal/mol (932.1321 without restraints) Performing minimization step: 3383. Total energy = 932.2734 kcal/mol (931.9956 without restraints) Performing minimization step: 3384. Total energy = 932.1367 kcal/mol (931.8588 without restraints) Performing minimization step: 3385. Total energy = 932.0000 kcal/mol (931.7221 without restraints) Performing minimization step: 3386. Total energy = 931.8634 kcal/mol (931.5855 without restraints) Performing minimization step: 3387. Total energy = 931.7270 kcal/mol (931.4490 without restraints) Performing minimization step: 3388. Total energy = 931.5907 kcal/mol (931.3126 without restraints) Performing minimization step: 3389. Total energy = 931.4544 kcal/mol (931.1763 without restraints) Performing minimization step: 3390. Total energy = 931.3182 kcal/mol (931.0401 without restraints) Performing minimization step: 3391. Total energy = 931.1822 kcal/mol (930.9040 without restraints) Performing minimization step: 3392. Total energy = 931.0464 kcal/mol (930.7682 without restraints) Performing minimization step: 3393. Total energy = 930.9105 kcal/mol (930.6323 without restraints) Performing minimization step: 3394. Total energy = 930.7747 kcal/mol (930.4964 without restraints) Performing minimization step: 3395. Total energy = 930.6389 kcal/mol (930.3606 without restraints) Performing minimization step: 3396. Total energy = 930.5033 kcal/mol (930.2249 without restraints) Performing minimization step: 3397. Total energy = 930.3679 kcal/mol (930.0896 without restraints) Performing minimization step: 3398. Total energy = 930.2325 kcal/mol (929.9541 without restraints) Performing minimization step: 3399. Total energy = 930.0971 kcal/mol (929.8186 without restraints) Performing minimization step: 3400. Total energy = 929.9618 kcal/mol (929.6833 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 929.8266 kcal/mol (929.5481 without restraints) Performing minimization step: 3402. Total energy = 929.6915 kcal/mol (929.4129 without restraints) Performing minimization step: 3403. Total energy = 929.5566 kcal/mol (929.2780 without restraints) Performing minimization step: 3404. Total energy = 929.4219 kcal/mol (929.1433 without restraints) Performing minimization step: 3405. Total energy = 929.2871 kcal/mol (929.0084 without restraints) Performing minimization step: 3406. Total energy = 929.1523 kcal/mol (928.8736 without restraints) Performing minimization step: 3407. Total energy = 929.0177 kcal/mol (928.7389 without restraints) Performing minimization step: 3408. Total energy = 928.8831 kcal/mol (928.6043 without restraints) Performing minimization step: 3409. Total energy = 928.7485 kcal/mol (928.4697 without restraints) Performing minimization step: 3410. Total energy = 928.6145 kcal/mol (928.3356 without restraints) Performing minimization step: 3411. Total energy = 928.4800 kcal/mol (928.2010 without restraints) Performing minimization step: 3412. Total energy = 928.3459 kcal/mol (928.0669 without restraints) Performing minimization step: 3413. Total energy = 928.2117 kcal/mol (927.9327 without restraints) Performing minimization step: 3414. Total energy = 928.0777 kcal/mol (927.7986 without restraints) Performing minimization step: 3415. Total energy = 927.9437 kcal/mol (927.6646 without restraints) Performing minimization step: 3416. Total energy = 927.8095 kcal/mol (927.5303 without restraints) Performing minimization step: 3417. Total energy = 927.6757 kcal/mol (927.3965 without restraints) Performing minimization step: 3418. Total energy = 927.5420 kcal/mol (927.2627 without restraints) Performing minimization step: 3419. Total energy = 927.4084 kcal/mol (927.1293 without restraints) Performing minimization step: 3420. Total energy = 927.2750 kcal/mol (926.9957 without restraints) Performing minimization step: 3421. Total energy = 927.1415 kcal/mol (926.8622 without restraints) Performing minimization step: 3422. Total energy = 927.0081 kcal/mol (926.7287 without restraints) Performing minimization step: 3423. Total energy = 926.8749 kcal/mol (926.5954 without restraints) Performing minimization step: 3424. Total energy = 926.7419 kcal/mol (926.4624 without restraints) Performing minimization step: 3425. Total energy = 926.6087 kcal/mol (926.3292 without restraints) Performing minimization step: 3426. Total energy = 926.4757 kcal/mol (926.1961 without restraints) Performing minimization step: 3427. Total energy = 926.3427 kcal/mol (926.0631 without restraints) Performing minimization step: 3428. Total energy = 926.2098 kcal/mol (925.9301 without restraints) Performing minimization step: 3429. Total energy = 926.0770 kcal/mol (925.7973 without restraints) Performing minimization step: 3430. Total energy = 925.9442 kcal/mol (925.6645 without restraints) Performing minimization step: 3431. Total energy = 925.8116 kcal/mol (925.5318 without restraints) Performing minimization step: 3432. Total energy = 925.6791 kcal/mol (925.3992 without restraints) Performing minimization step: 3433. Total energy = 925.5469 kcal/mol (925.2670 without restraints) Performing minimization step: 3434. Total energy = 925.4147 kcal/mol (925.1347 without restraints) Performing minimization step: 3435. Total energy = 925.2824 kcal/mol (925.0024 without restraints) Performing minimization step: 3436. Total energy = 925.1503 kcal/mol (924.8703 without restraints) Performing minimization step: 3437. Total energy = 925.0182 kcal/mol (924.7382 without restraints) Performing minimization step: 3438. Total energy = 924.8862 kcal/mol (924.6060 without restraints) Performing minimization step: 3439. Total energy = 924.7542 kcal/mol (924.4740 without restraints) Performing minimization step: 3440. Total energy = 924.6226 kcal/mol (924.3425 without restraints) Performing minimization step: 3441. Total energy = 924.4909 kcal/mol (924.2106 without restraints) Performing minimization step: 3442. Total energy = 924.3593 kcal/mol (924.0790 without restraints) Performing minimization step: 3443. Total energy = 924.2279 kcal/mol (923.9476 without restraints) Performing minimization step: 3444. Total energy = 924.0963 kcal/mol (923.8160 without restraints) Performing minimization step: 3445. Total energy = 923.9649 kcal/mol (923.6844 without restraints) Performing minimization step: 3446. Total energy = 923.8335 kcal/mol (923.5530 without restraints) Performing minimization step: 3447. Total energy = 923.7021 kcal/mol (923.4216 without restraints) Performing minimization step: 3448. Total energy = 923.5709 kcal/mol (923.2903 without restraints) Performing minimization step: 3449. Total energy = 923.4396 kcal/mol (923.1588 without restraints) Performing minimization step: 3450. Total energy = 923.3084 kcal/mol (923.0277 without restraints) Performing minimization step: 3451. Total energy = 923.1776 kcal/mol (922.8969 without restraints) Performing minimization step: 3452. Total energy = 923.0467 kcal/mol (922.7659 without restraints) Performing minimization step: 3453. Total energy = 922.9161 kcal/mol (922.6353 without restraints) Performing minimization step: 3454. Total energy = 922.7853 kcal/mol (922.5045 without restraints) Performing minimization step: 3455. Total energy = 922.6547 kcal/mol (922.3737 without restraints) Performing minimization step: 3456. Total energy = 922.5240 kcal/mol (922.2431 without restraints) Performing minimization step: 3457. Total energy = 922.3935 kcal/mol (922.1125 without restraints) Performing minimization step: 3458. Total energy = 922.2632 kcal/mol (921.9821 without restraints) Performing minimization step: 3459. Total energy = 922.1328 kcal/mol (921.8517 without restraints) Performing minimization step: 3460. Total energy = 922.0028 kcal/mol (921.7216 without restraints) Performing minimization step: 3461. Total energy = 921.8726 kcal/mol (921.5913 without restraints) Performing minimization step: 3462. Total energy = 921.7424 kcal/mol (921.4611 without restraints) Performing minimization step: 3463. Total energy = 921.6124 kcal/mol (921.3311 without restraints) Performing minimization step: 3464. Total energy = 921.4824 kcal/mol (921.2010 without restraints) Performing minimization step: 3465. Total energy = 921.3525 kcal/mol (921.0711 without restraints) Performing minimization step: 3466. Total energy = 921.2228 kcal/mol (920.9414 without restraints) Performing minimization step: 3467. Total energy = 921.0928 kcal/mol (920.8113 without restraints) Performing minimization step: 3468. Total energy = 920.9631 kcal/mol (920.6815 without restraints) Performing minimization step: 3469. Total energy = 920.8335 kcal/mol (920.5519 without restraints) Performing minimization step: 3470. Total energy = 920.7040 kcal/mol (920.4223 without restraints) Performing minimization step: 3471. Total energy = 920.5746 kcal/mol (920.2930 without restraints) Performing minimization step: 3472. Total energy = 920.4453 kcal/mol (920.1635 without restraints) Performing minimization step: 3473. Total energy = 920.3160 kcal/mol (920.0342 without restraints) Performing minimization step: 3474. Total energy = 920.1868 kcal/mol (919.9050 without restraints) Performing minimization step: 3475. Total energy = 920.0581 kcal/mol (919.7762 without restraints) Performing minimization step: 3476. Total energy = 919.9291 kcal/mol (919.6471 without restraints) Performing minimization step: 3477. Total energy = 919.8001 kcal/mol (919.5181 without restraints) Performing minimization step: 3478. Total energy = 919.6711 kcal/mol (919.3891 without restraints) Performing minimization step: 3479. Total energy = 919.5424 kcal/mol (919.2605 without restraints) Performing minimization step: 3480. Total energy = 919.4138 kcal/mol (919.1317 without restraints) Performing minimization step: 3481. Total energy = 919.2856 kcal/mol (919.0034 without restraints) Performing minimization step: 3482. Total energy = 919.1570 kcal/mol (918.8747 without restraints) Performing minimization step: 3483. Total energy = 919.0285 kcal/mol (918.7462 without restraints) Performing minimization step: 3484. Total energy = 918.9001 kcal/mol (918.6177 without restraints) Performing minimization step: 3485. Total energy = 918.7717 kcal/mol (918.4893 without restraints) Performing minimization step: 3486. Total energy = 918.6434 kcal/mol (918.3609 without restraints) Performing minimization step: 3487. Total energy = 918.5151 kcal/mol (918.2326 without restraints) Performing minimization step: 3488. Total energy = 918.3870 kcal/mol (918.1044 without restraints) Performing minimization step: 3489. Total energy = 918.2589 kcal/mol (917.9763 without restraints) Performing minimization step: 3490. Total energy = 918.1309 kcal/mol (917.8482 without restraints) Performing minimization step: 3491. Total energy = 918.0029 kcal/mol (917.7202 without restraints) Performing minimization step: 3492. Total energy = 917.8751 kcal/mol (917.5923 without restraints) Performing minimization step: 3493. Total energy = 917.7473 kcal/mol (917.4644 without restraints) Performing minimization step: 3494. Total energy = 917.6196 kcal/mol (917.3367 without restraints) Performing minimization step: 3495. Total energy = 917.4917 kcal/mol (917.2088 without restraints) Performing minimization step: 3496. Total energy = 917.3639 kcal/mol (917.0809 without restraints) Performing minimization step: 3497. Total energy = 917.2365 kcal/mol (916.9536 without restraints) Performing minimization step: 3498. Total energy = 917.1093 kcal/mol (916.8263 without restraints) Performing minimization step: 3499. Total energy = 916.9820 kcal/mol (916.6989 without restraints) Performing minimization step: 3500. Total energy = 916.8549 kcal/mol (916.5717 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 916.7277 kcal/mol (916.4445 without restraints) Performing minimization step: 3502. Total energy = 916.6006 kcal/mol (916.3173 without restraints) Performing minimization step: 3503. Total energy = 916.4735 kcal/mol (916.1901 without restraints) Performing minimization step: 3504. Total energy = 916.3465 kcal/mol (916.0631 without restraints) Performing minimization step: 3505. Total energy = 916.2198 kcal/mol (915.9363 without restraints) Performing minimization step: 3506. Total energy = 916.0930 kcal/mol (915.8094 without restraints) Performing minimization step: 3507. Total energy = 915.9662 kcal/mol (915.6826 without restraints) Performing minimization step: 3508. Total energy = 915.8397 kcal/mol (915.5563 without restraints) Performing minimization step: 3509. Total energy = 915.7132 kcal/mol (915.4295 without restraints) Performing minimization step: 3510. Total energy = 915.5866 kcal/mol (915.3029 without restraints) Performing minimization step: 3511. Total energy = 915.4601 kcal/mol (915.1763 without restraints) Performing minimization step: 3512. Total energy = 915.3338 kcal/mol (915.0501 without restraints) Performing minimization step: 3513. Total energy = 915.2076 kcal/mol (914.9237 without restraints) Performing minimization step: 3514. Total energy = 915.0814 kcal/mol (914.7975 without restraints) Performing minimization step: 3515. Total energy = 914.9552 kcal/mol (914.6712 without restraints) Performing minimization step: 3516. Total energy = 914.8291 kcal/mol (914.5450 without restraints) Performing minimization step: 3517. Total energy = 914.7031 kcal/mol (914.4189 without restraints) Performing minimization step: 3518. Total energy = 914.5772 kcal/mol (914.2930 without restraints) Performing minimization step: 3519. Total energy = 914.4511 kcal/mol (914.1669 without restraints) Performing minimization step: 3520. Total energy = 914.3254 kcal/mol (914.0411 without restraints) Performing minimization step: 3521. Total energy = 914.1997 kcal/mol (913.9153 without restraints) Performing minimization step: 3522. Total energy = 914.0737 kcal/mol (913.7893 without restraints) Performing minimization step: 3523. Total energy = 913.9481 kcal/mol (913.6636 without restraints) Performing minimization step: 3524. Total energy = 913.8225 kcal/mol (913.5380 without restraints) Performing minimization step: 3525. Total energy = 913.6970 kcal/mol (913.4125 without restraints) Performing minimization step: 3526. Total energy = 913.5716 kcal/mol (913.2870 without restraints) Performing minimization step: 3527. Total energy = 913.4465 kcal/mol (913.1618 without restraints) Performing minimization step: 3528. Total energy = 913.3212 kcal/mol (913.0364 without restraints) Performing minimization step: 3529. Total energy = 913.1957 kcal/mol (912.9109 without restraints) Performing minimization step: 3530. Total energy = 913.0706 kcal/mol (912.7857 without restraints) Performing minimization step: 3531. Total energy = 912.9455 kcal/mol (912.6606 without restraints) Performing minimization step: 3532. Total energy = 912.8205 kcal/mol (912.5355 without restraints) Performing minimization step: 3533. Total energy = 912.6956 kcal/mol (912.4105 without restraints) Performing minimization step: 3534. Total energy = 912.5707 kcal/mol (912.2856 without restraints) Performing minimization step: 3535. Total energy = 912.4459 kcal/mol (912.1608 without restraints) Performing minimization step: 3536. Total energy = 912.3210 kcal/mol (912.0358 without restraints) Performing minimization step: 3537. Total energy = 912.1963 kcal/mol (911.9111 without restraints) Performing minimization step: 3538. Total energy = 912.0716 kcal/mol (911.7862 without restraints) Performing minimization step: 3539. Total energy = 911.9470 kcal/mol (911.6617 without restraints) Performing minimization step: 3540. Total energy = 911.8226 kcal/mol (911.5371 without restraints) Performing minimization step: 3541. Total energy = 911.6981 kcal/mol (911.4125 without restraints) Performing minimization step: 3542. Total energy = 911.5734 kcal/mol (911.2879 without restraints) Performing minimization step: 3543. Total energy = 911.4492 kcal/mol (911.1636 without restraints) Performing minimization step: 3544. Total energy = 911.3250 kcal/mol (911.0393 without restraints) Performing minimization step: 3545. Total energy = 911.2009 kcal/mol (910.9152 without restraints) Performing minimization step: 3546. Total energy = 911.0768 kcal/mol (910.7911 without restraints) Performing minimization step: 3547. Total energy = 910.9529 kcal/mol (910.6671 without restraints) Performing minimization step: 3548. Total energy = 910.8290 kcal/mol (910.5431 without restraints) Performing minimization step: 3549. Total energy = 910.7053 kcal/mol (910.4193 without restraints) Performing minimization step: 3550. Total energy = 910.5815 kcal/mol (910.2955 without restraints) Performing minimization step: 3551. Total energy = 910.4578 kcal/mol (910.1717 without restraints) Performing minimization step: 3552. Total energy = 910.3343 kcal/mol (910.0483 without restraints) Performing minimization step: 3553. Total energy = 910.2108 kcal/mol (909.9246 without restraints) Performing minimization step: 3554. Total energy = 910.0873 kcal/mol (909.8010 without restraints) Performing minimization step: 3555. Total energy = 909.9640 kcal/mol (909.6777 without restraints) Performing minimization step: 3556. Total energy = 909.8406 kcal/mol (909.5543 without restraints) Performing minimization step: 3557. Total energy = 909.7171 kcal/mol (909.4307 without restraints) Performing minimization step: 3558. Total energy = 909.5939 kcal/mol (909.3073 without restraints) Performing minimization step: 3559. Total energy = 909.4707 kcal/mol (909.1841 without restraints) Performing minimization step: 3560. Total energy = 909.3473 kcal/mol (909.0607 without restraints) Performing minimization step: 3561. Total energy = 909.2243 kcal/mol (908.9376 without restraints) Performing minimization step: 3562. Total energy = 909.1013 kcal/mol (908.8146 without restraints) Performing minimization step: 3563. Total energy = 908.9788 kcal/mol (908.6920 without restraints) Performing minimization step: 3564. Total energy = 908.8559 kcal/mol (908.5691 without restraints) Performing minimization step: 3565. Total energy = 908.7331 kcal/mol (908.4462 without restraints) Performing minimization step: 3566. Total energy = 908.6105 kcal/mol (908.3237 without restraints) Performing minimization step: 3567. Total energy = 908.4881 kcal/mol (908.2011 without restraints) Performing minimization step: 3568. Total energy = 908.3657 kcal/mol (908.0787 without restraints) Performing minimization step: 3569. Total energy = 908.2433 kcal/mol (907.9561 without restraints) Performing minimization step: 3570. Total energy = 908.1208 kcal/mol (907.8336 without restraints) Performing minimization step: 3571. Total energy = 907.9984 kcal/mol (907.7112 without restraints) Performing minimization step: 3572. Total energy = 907.8761 kcal/mol (907.5887 without restraints) Performing minimization step: 3573. Total energy = 907.7538 kcal/mol (907.4664 without restraints) Performing minimization step: 3574. Total energy = 907.6316 kcal/mol (907.3442 without restraints) Performing minimization step: 3575. Total energy = 907.5093 kcal/mol (907.2218 without restraints) Performing minimization step: 3576. Total energy = 907.3872 kcal/mol (907.0996 without restraints) Performing minimization step: 3577. Total energy = 907.2652 kcal/mol (906.9775 without restraints) Performing minimization step: 3578. Total energy = 907.1432 kcal/mol (906.8555 without restraints) Performing minimization step: 3579. Total energy = 907.0215 kcal/mol (906.7337 without restraints) Performing minimization step: 3580. Total energy = 906.8997 kcal/mol (906.6118 without restraints) Performing minimization step: 3581. Total energy = 906.7779 kcal/mol (906.4900 without restraints) Performing minimization step: 3582. Total energy = 906.6562 kcal/mol (906.3683 without restraints) Performing minimization step: 3583. Total energy = 906.5348 kcal/mol (906.2468 without restraints) Performing minimization step: 3584. Total energy = 906.4135 kcal/mol (906.1255 without restraints) Performing minimization step: 3585. Total energy = 906.2920 kcal/mol (906.0039 without restraints) Performing minimization step: 3586. Total energy = 906.1708 kcal/mol (905.8826 without restraints) Performing minimization step: 3587. Total energy = 906.0495 kcal/mol (905.7612 without restraints) Performing minimization step: 3588. Total energy = 905.9281 kcal/mol (905.6398 without restraints) Performing minimization step: 3589. Total energy = 905.8070 kcal/mol (905.5186 without restraints) Performing minimization step: 3590. Total energy = 905.6858 kcal/mol (905.3973 without restraints) Performing minimization step: 3591. Total energy = 905.5645 kcal/mol (905.2760 without restraints) Performing minimization step: 3592. Total energy = 905.4434 kcal/mol (905.1549 without restraints) Performing minimization step: 3593. Total energy = 905.3225 kcal/mol (905.0340 without restraints) Performing minimization step: 3594. Total energy = 905.2017 kcal/mol (904.9130 without restraints) Performing minimization step: 3595. Total energy = 905.0809 kcal/mol (904.7921 without restraints) Performing minimization step: 3596. Total energy = 904.9601 kcal/mol (904.6712 without restraints) Performing minimization step: 3597. Total energy = 904.8393 kcal/mol (904.5504 without restraints) Performing minimization step: 3598. Total energy = 904.7187 kcal/mol (904.4297 without restraints) Performing minimization step: 3599. Total energy = 904.5982 kcal/mol (904.3092 without restraints) Performing minimization step: 3600. Total energy = 904.4777 kcal/mol (904.1886 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 904.3572 kcal/mol (904.0680 without restraints) Performing minimization step: 3602. Total energy = 904.2369 kcal/mol (903.9477 without restraints) Performing minimization step: 3603. Total energy = 904.1167 kcal/mol (903.8275 without restraints) Performing minimization step: 3604. Total energy = 903.9964 kcal/mol (903.7071 without restraints) Performing minimization step: 3605. Total energy = 903.8763 kcal/mol (903.5870 without restraints) Performing minimization step: 3606. Total energy = 903.7562 kcal/mol (903.4668 without restraints) Performing minimization step: 3607. Total energy = 903.6362 kcal/mol (903.3466 without restraints) Performing minimization step: 3608. Total energy = 903.5164 kcal/mol (903.2268 without restraints) Performing minimization step: 3609. Total energy = 903.3964 kcal/mol (903.1067 without restraints) Performing minimization step: 3610. Total energy = 903.2764 kcal/mol (902.9867 without restraints) Performing minimization step: 3611. Total energy = 903.1566 kcal/mol (902.8668 without restraints) Performing minimization step: 3612. Total energy = 903.0364 kcal/mol (902.7466 without restraints) Performing minimization step: 3613. Total energy = 902.9173 kcal/mol (902.6275 without restraints) Performing minimization step: 3614. Total energy = 902.7980 kcal/mol (902.5080 without restraints) Performing minimization step: 3615. Total energy = 902.6784 kcal/mol (902.3885 without restraints) Performing minimization step: 3616. Total energy = 902.5590 kcal/mol (902.2689 without restraints) Performing minimization step: 3617. Total energy = 902.4395 kcal/mol (902.1493 without restraints) Performing minimization step: 3618. Total energy = 902.3199 kcal/mol (902.0296 without restraints) Performing minimization step: 3619. Total energy = 902.2005 kcal/mol (901.9102 without restraints) Performing minimization step: 3620. Total energy = 902.0812 kcal/mol (901.7908 without restraints) Performing minimization step: 3621. Total energy = 901.9618 kcal/mol (901.6713 without restraints) Performing minimization step: 3622. Total energy = 901.8426 kcal/mol (901.5521 without restraints) Performing minimization step: 3623. Total energy = 901.7235 kcal/mol (901.4329 without restraints) Performing minimization step: 3624. Total energy = 901.6045 kcal/mol (901.3138 without restraints) Performing minimization step: 3625. Total energy = 901.4855 kcal/mol (901.1948 without restraints) Performing minimization step: 3626. Total energy = 901.3668 kcal/mol (901.0760 without restraints) Performing minimization step: 3627. Total energy = 901.2479 kcal/mol (900.9571 without restraints) Performing minimization step: 3628. Total energy = 901.1291 kcal/mol (900.8382 without restraints) Performing minimization step: 3629. Total energy = 901.0103 kcal/mol (900.7194 without restraints) Performing minimization step: 3630. Total energy = 900.8916 kcal/mol (900.6006 without restraints) Performing minimization step: 3631. Total energy = 900.7730 kcal/mol (900.4819 without restraints) Performing minimization step: 3632. Total energy = 900.6544 kcal/mol (900.3633 without restraints) Performing minimization step: 3633. Total energy = 900.5356 kcal/mol (900.2444 without restraints) Performing minimization step: 3634. Total energy = 900.4172 kcal/mol (900.1259 without restraints) Performing minimization step: 3635. Total energy = 900.2989 kcal/mol (900.0075 without restraints) Performing minimization step: 3636. Total energy = 900.1805 kcal/mol (899.8891 without restraints) Performing minimization step: 3637. Total energy = 900.0623 kcal/mol (899.7709 without restraints) Performing minimization step: 3638. Total energy = 899.9442 kcal/mol (899.6528 without restraints) Performing minimization step: 3639. Total energy = 899.8262 kcal/mol (899.5346 without restraints) Performing minimization step: 3640. Total energy = 899.7082 kcal/mol (899.4167 without restraints) Performing minimization step: 3641. Total energy = 899.5905 kcal/mol (899.2988 without restraints) Performing minimization step: 3642. Total energy = 899.4727 kcal/mol (899.1809 without restraints) Performing minimization step: 3643. Total energy = 899.3548 kcal/mol (899.0629 without restraints) Performing minimization step: 3644. Total energy = 899.2370 kcal/mol (898.9450 without restraints) Performing minimization step: 3645. Total energy = 899.1192 kcal/mol (898.8272 without restraints) Performing minimization step: 3646. Total energy = 899.0014 kcal/mol (898.7094 without restraints) Performing minimization step: 3647. Total energy = 898.8835 kcal/mol (898.5914 without restraints) Performing minimization step: 3648. Total energy = 898.7660 kcal/mol (898.4737 without restraints) Performing minimization step: 3649. Total energy = 898.6484 kcal/mol (898.3561 without restraints) Performing minimization step: 3650. Total energy = 898.5309 kcal/mol (898.2385 without restraints) Performing minimization step: 3651. Total energy = 898.4134 kcal/mol (898.1210 without restraints) Performing minimization step: 3652. Total energy = 898.2962 kcal/mol (898.0038 without restraints) Performing minimization step: 3653. Total energy = 898.1790 kcal/mol (897.8865 without restraints) Performing minimization step: 3654. Total energy = 898.0618 kcal/mol (897.7692 without restraints) Performing minimization step: 3655. Total energy = 897.9444 kcal/mol (897.6517 without restraints) Performing minimization step: 3656. Total energy = 897.8273 kcal/mol (897.5345 without restraints) Performing minimization step: 3657. Total energy = 897.7102 kcal/mol (897.4174 without restraints) Performing minimization step: 3658. Total energy = 897.5932 kcal/mol (897.3003 without restraints) Performing minimization step: 3659. Total energy = 897.4764 kcal/mol (897.1834 without restraints) Performing minimization step: 3660. Total energy = 897.3596 kcal/mol (897.0667 without restraints) Performing minimization step: 3661. Total energy = 897.2428 kcal/mol (896.9497 without restraints) Performing minimization step: 3662. Total energy = 897.1260 kcal/mol (896.8329 without restraints) Performing minimization step: 3663. Total energy = 897.0093 kcal/mol (896.7160 without restraints) Performing minimization step: 3664. Total energy = 896.8928 kcal/mol (896.5995 without restraints) Performing minimization step: 3665. Total energy = 896.7762 kcal/mol (896.4828 without restraints) Performing minimization step: 3666. Total energy = 896.6596 kcal/mol (896.3662 without restraints) Performing minimization step: 3667. Total energy = 896.5432 kcal/mol (896.2498 without restraints) Performing minimization step: 3668. Total energy = 896.4264 kcal/mol (896.1328 without restraints) Performing minimization step: 3669. Total energy = 896.3104 kcal/mol (896.0167 without restraints) Performing minimization step: 3670. Total energy = 896.1940 kcal/mol (895.9003 without restraints) Performing minimization step: 3671. Total energy = 896.0778 kcal/mol (895.7840 without restraints) Performing minimization step: 3672. Total energy = 895.9616 kcal/mol (895.6677 without restraints) Performing minimization step: 3673. Total energy = 895.8454 kcal/mol (895.5515 without restraints) Performing minimization step: 3674. Total energy = 895.7293 kcal/mol (895.4353 without restraints) Performing minimization step: 3675. Total energy = 895.6132 kcal/mol (895.3192 without restraints) Performing minimization step: 3676. Total energy = 895.4975 kcal/mol (895.2033 without restraints) Performing minimization step: 3677. Total energy = 895.3815 kcal/mol (895.0873 without restraints) Performing minimization step: 3678. Total energy = 895.2656 kcal/mol (894.9714 without restraints) Performing minimization step: 3679. Total energy = 895.1499 kcal/mol (894.8555 without restraints) Performing minimization step: 3680. Total energy = 895.0341 kcal/mol (894.7397 without restraints) Performing minimization step: 3681. Total energy = 894.9184 kcal/mol (894.6239 without restraints) Performing minimization step: 3682. Total energy = 894.8028 kcal/mol (894.5084 without restraints) Performing minimization step: 3683. Total energy = 894.6873 kcal/mol (894.3927 without restraints) Performing minimization step: 3684. Total energy = 894.5717 kcal/mol (894.2771 without restraints) Performing minimization step: 3685. Total energy = 894.4563 kcal/mol (894.1615 without restraints) Performing minimization step: 3686. Total energy = 894.3409 kcal/mol (894.0461 without restraints) Performing minimization step: 3687. Total energy = 894.2257 kcal/mol (893.9308 without restraints) Performing minimization step: 3688. Total energy = 894.1106 kcal/mol (893.8157 without restraints) Performing minimization step: 3689. Total energy = 893.9955 kcal/mol (893.7006 without restraints) Performing minimization step: 3690. Total energy = 893.8804 kcal/mol (893.5853 without restraints) Performing minimization step: 3691. Total energy = 893.7654 kcal/mol (893.4703 without restraints) Performing minimization step: 3692. Total energy = 893.6504 kcal/mol (893.3551 without restraints) Performing minimization step: 3693. Total energy = 893.5353 kcal/mol (893.2400 without restraints) Performing minimization step: 3694. Total energy = 893.4204 kcal/mol (893.1250 without restraints) Performing minimization step: 3695. Total energy = 893.3055 kcal/mol (893.0100 without restraints) Performing minimization step: 3696. Total energy = 893.1904 kcal/mol (892.8949 without restraints) Performing minimization step: 3697. Total energy = 893.0756 kcal/mol (892.7800 without restraints) Performing minimization step: 3698. Total energy = 892.9609 kcal/mol (892.6652 without restraints) Performing minimization step: 3699. Total energy = 892.8466 kcal/mol (892.5508 without restraints) Performing minimization step: 3700. Total energy = 892.7319 kcal/mol (892.4361 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 892.6173 kcal/mol (892.3215 without restraints) Performing minimization step: 3702. Total energy = 892.5028 kcal/mol (892.2069 without restraints) Performing minimization step: 3703. Total energy = 892.3883 kcal/mol (892.0923 without restraints) Performing minimization step: 3704. Total energy = 892.2739 kcal/mol (891.9778 without restraints) Performing minimization step: 3705. Total energy = 892.1595 kcal/mol (891.8634 without restraints) Performing minimization step: 3706. Total energy = 892.0450 kcal/mol (891.7488 without restraints) Performing minimization step: 3707. Total energy = 891.9310 kcal/mol (891.6347 without restraints) Performing minimization step: 3708. Total energy = 891.8168 kcal/mol (891.5204 without restraints) Performing minimization step: 3709. Total energy = 891.7027 kcal/mol (891.4063 without restraints) Performing minimization step: 3710. Total energy = 891.5886 kcal/mol (891.2921 without restraints) Performing minimization step: 3711. Total energy = 891.4746 kcal/mol (891.1780 without restraints) Performing minimization step: 3712. Total energy = 891.3606 kcal/mol (891.0639 without restraints) Performing minimization step: 3713. Total energy = 891.2464 kcal/mol (890.9497 without restraints) Performing minimization step: 3714. Total energy = 891.1326 kcal/mol (890.8358 without restraints) Performing minimization step: 3715. Total energy = 891.0187 kcal/mol (890.7219 without restraints) Performing minimization step: 3716. Total energy = 890.9050 kcal/mol (890.6081 without restraints) Performing minimization step: 3717. Total energy = 890.7914 kcal/mol (890.4945 without restraints) Performing minimization step: 3718. Total energy = 890.6777 kcal/mol (890.3806 without restraints) Performing minimization step: 3719. Total energy = 890.5641 kcal/mol (890.2669 without restraints) Performing minimization step: 3720. Total energy = 890.4508 kcal/mol (890.1536 without restraints) Performing minimization step: 3721. Total energy = 890.3373 kcal/mol (890.0400 without restraints) Performing minimization step: 3722. Total energy = 890.2239 kcal/mol (889.9265 without restraints) Performing minimization step: 3723. Total energy = 890.1105 kcal/mol (889.8131 without restraints) Performing minimization step: 3724. Total energy = 889.9972 kcal/mol (889.6997 without restraints) Performing minimization step: 3725. Total energy = 889.8839 kcal/mol (889.5863 without restraints) Performing minimization step: 3726. Total energy = 889.7709 kcal/mol (889.4732 without restraints) Performing minimization step: 3727. Total energy = 889.6577 kcal/mol (889.3600 without restraints) Performing minimization step: 3728. Total energy = 889.5448 kcal/mol (889.2470 without restraints) Performing minimization step: 3729. Total energy = 889.4317 kcal/mol (889.1339 without restraints) Performing minimization step: 3730. Total energy = 889.3187 kcal/mol (889.0208 without restraints) Performing minimization step: 3731. Total energy = 889.2058 kcal/mol (888.9078 without restraints) Performing minimization step: 3732. Total energy = 889.0930 kcal/mol (888.7950 without restraints) Performing minimization step: 3733. Total energy = 888.9802 kcal/mol (888.6821 without restraints) Performing minimization step: 3734. Total energy = 888.8674 kcal/mol (888.5692 without restraints) Performing minimization step: 3735. Total energy = 888.7547 kcal/mol (888.4564 without restraints) Performing minimization step: 3736. Total energy = 888.6420 kcal/mol (888.3437 without restraints) Performing minimization step: 3737. Total energy = 888.5294 kcal/mol (888.2310 without restraints) Performing minimization step: 3738. Total energy = 888.4167 kcal/mol (888.1181 without restraints) Performing minimization step: 3739. Total energy = 888.3041 kcal/mol (888.0055 without restraints) Performing minimization step: 3740. Total energy = 888.1914 kcal/mol (887.8927 without restraints) Performing minimization step: 3741. Total energy = 888.0790 kcal/mol (887.7803 without restraints) Performing minimization step: 3742. Total energy = 887.9666 kcal/mol (887.6678 without restraints) Performing minimization step: 3743. Total energy = 887.8544 kcal/mol (887.5555 without restraints) Performing minimization step: 3744. Total energy = 887.7422 kcal/mol (887.4434 without restraints) Performing minimization step: 3745. Total energy = 887.6301 kcal/mol (887.3311 without restraints) Performing minimization step: 3746. Total energy = 887.5181 kcal/mol (887.2191 without restraints) Performing minimization step: 3747. Total energy = 887.4062 kcal/mol (887.1072 without restraints) Performing minimization step: 3748. Total energy = 887.2943 kcal/mol (886.9951 without restraints) Performing minimization step: 3749. Total energy = 887.1823 kcal/mol (886.8830 without restraints) Performing minimization step: 3750. Total energy = 887.0704 kcal/mol (886.7710 without restraints) Performing minimization step: 3751. Total energy = 886.9585 kcal/mol (886.6590 without restraints) Performing minimization step: 3752. Total energy = 886.8466 kcal/mol (886.5471 without restraints) Performing minimization step: 3753. Total energy = 886.7348 kcal/mol (886.4352 without restraints) Performing minimization step: 3754. Total energy = 886.6231 kcal/mol (886.3234 without restraints) Performing minimization step: 3755. Total energy = 886.5114 kcal/mol (886.2116 without restraints) Performing minimization step: 3756. Total energy = 886.4000 kcal/mol (886.1002 without restraints) Performing minimization step: 3757. Total energy = 886.2884 kcal/mol (885.9885 without restraints) Performing minimization step: 3758. Total energy = 886.1769 kcal/mol (885.8769 without restraints) Performing minimization step: 3759. Total energy = 886.0656 kcal/mol (885.7656 without restraints) Performing minimization step: 3760. Total energy = 885.9542 kcal/mol (885.6541 without restraints) Performing minimization step: 3761. Total energy = 885.8428 kcal/mol (885.5426 without restraints) Performing minimization step: 3762. Total energy = 885.7314 kcal/mol (885.4312 without restraints) Performing minimization step: 3763. Total energy = 885.6210 kcal/mol (885.3207 without restraints) Performing minimization step: 3764. Total energy = 885.5098 kcal/mol (885.2094 without restraints) Performing minimization step: 3765. Total energy = 885.3987 kcal/mol (885.0982 without restraints) Performing minimization step: 3766. Total energy = 885.2878 kcal/mol (884.9872 without restraints) Performing minimization step: 3767. Total energy = 885.1767 kcal/mol (884.8761 without restraints) Performing minimization step: 3768. Total energy = 885.0657 kcal/mol (884.7650 without restraints) Performing minimization step: 3769. Total energy = 884.9550 kcal/mol (884.6542 without restraints) Performing minimization step: 3770. Total energy = 884.8438 kcal/mol (884.5430 without restraints) Performing minimization step: 3771. Total energy = 884.7332 kcal/mol (884.4323 without restraints) Performing minimization step: 3772. Total energy = 884.6222 kcal/mol (884.3212 without restraints) Performing minimization step: 3773. Total energy = 884.5114 kcal/mol (884.2103 without restraints) Performing minimization step: 3774. Total energy = 884.4007 kcal/mol (884.0996 without restraints) Performing minimization step: 3775. Total energy = 884.2898 kcal/mol (883.9886 without restraints) Performing minimization step: 3776. Total energy = 884.1792 kcal/mol (883.8779 without restraints) Performing minimization step: 3777. Total energy = 884.0686 kcal/mol (883.7672 without restraints) Performing minimization step: 3778. Total energy = 883.9581 kcal/mol (883.6566 without restraints) Performing minimization step: 3779. Total energy = 883.8476 kcal/mol (883.5461 without restraints) Performing minimization step: 3780. Total energy = 883.7372 kcal/mol (883.4356 without restraints) Performing minimization step: 3781. Total energy = 883.6270 kcal/mol (883.3254 without restraints) Performing minimization step: 3782. Total energy = 883.5168 kcal/mol (883.2150 without restraints) Performing minimization step: 3783. Total energy = 883.4065 kcal/mol (883.1047 without restraints) Performing minimization step: 3784. Total energy = 883.2961 kcal/mol (882.9941 without restraints) Performing minimization step: 3785. Total energy = 883.1859 kcal/mol (882.8839 without restraints) Performing minimization step: 3786. Total energy = 883.0758 kcal/mol (882.7737 without restraints) Performing minimization step: 3787. Total energy = 882.9657 kcal/mol (882.6636 without restraints) Performing minimization step: 3788. Total energy = 882.8557 kcal/mol (882.5535 without restraints) Performing minimization step: 3789. Total energy = 882.7457 kcal/mol (882.4434 without restraints) Performing minimization step: 3790. Total energy = 882.6358 kcal/mol (882.3334 without restraints) Performing minimization step: 3791. Total energy = 882.5259 kcal/mol (882.2235 without restraints) Performing minimization step: 3792. Total energy = 882.4161 kcal/mol (882.1136 without restraints) Performing minimization step: 3793. Total energy = 882.3064 kcal/mol (882.0038 without restraints) Performing minimization step: 3794. Total energy = 882.1968 kcal/mol (881.8942 without restraints) Performing minimization step: 3795. Total energy = 882.0872 kcal/mol (881.7844 without restraints) Performing minimization step: 3796. Total energy = 881.9774 kcal/mol (881.6745 without restraints) Performing minimization step: 3797. Total energy = 881.8677 kcal/mol (881.5648 without restraints) Performing minimization step: 3798. Total energy = 881.7579 kcal/mol (881.4550 without restraints) Performing minimization step: 3799. Total energy = 881.6484 kcal/mol (881.3454 without restraints) Performing minimization step: 3800. Total energy = 881.5390 kcal/mol (881.2359 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 881.4296 kcal/mol (881.1265 without restraints) Performing minimization step: 3802. Total energy = 881.3203 kcal/mol (881.0171 without restraints) Performing minimization step: 3803. Total energy = 881.2114 kcal/mol (880.9081 without restraints) Performing minimization step: 3804. Total energy = 881.1022 kcal/mol (880.7988 without restraints) Performing minimization step: 3805. Total energy = 880.9931 kcal/mol (880.6896 without restraints) Performing minimization step: 3806. Total energy = 880.8839 kcal/mol (880.5804 without restraints) Performing minimization step: 3807. Total energy = 880.7749 kcal/mol (880.4714 without restraints) Performing minimization step: 3808. Total energy = 880.6658 kcal/mol (880.3621 without restraints) Performing minimization step: 3809. Total energy = 880.5569 kcal/mol (880.2532 without restraints) Performing minimization step: 3810. Total energy = 880.4480 kcal/mol (880.1441 without restraints) Performing minimization step: 3811. Total energy = 880.3391 kcal/mol (880.0352 without restraints) Performing minimization step: 3812. Total energy = 880.2302 kcal/mol (879.9262 without restraints) Performing minimization step: 3813. Total energy = 880.1215 kcal/mol (879.8174 without restraints) Performing minimization step: 3814. Total energy = 880.0128 kcal/mol (879.7088 without restraints) Performing minimization step: 3815. Total energy = 879.9047 kcal/mol (879.6004 without restraints) Performing minimization step: 3816. Total energy = 879.7960 kcal/mol (879.4917 without restraints) Performing minimization step: 3817. Total energy = 879.6875 kcal/mol (879.3831 without restraints) Performing minimization step: 3818. Total energy = 879.5789 kcal/mol (879.2744 without restraints) Performing minimization step: 3819. Total energy = 879.4704 kcal/mol (879.1658 without restraints) Performing minimization step: 3820. Total energy = 879.3619 kcal/mol (879.0573 without restraints) Performing minimization step: 3821. Total energy = 879.2535 kcal/mol (878.9488 without restraints) Performing minimization step: 3822. Total energy = 879.1451 kcal/mol (878.8403 without restraints) Performing minimization step: 3823. Total energy = 879.0368 kcal/mol (878.7319 without restraints) Performing minimization step: 3824. Total energy = 878.9285 kcal/mol (878.6236 without restraints) Performing minimization step: 3825. Total energy = 878.8203 kcal/mol (878.5153 without restraints) Performing minimization step: 3826. Total energy = 878.7121 kcal/mol (878.4070 without restraints) Performing minimization step: 3827. Total energy = 878.6037 kcal/mol (878.2986 without restraints) Performing minimization step: 3828. Total energy = 878.4954 kcal/mol (878.1902 without restraints) Performing minimization step: 3829. Total energy = 878.3873 kcal/mol (878.0820 without restraints) Performing minimization step: 3830. Total energy = 878.2792 kcal/mol (877.9737 without restraints) Performing minimization step: 3831. Total energy = 878.1712 kcal/mol (877.8657 without restraints) Performing minimization step: 3832. Total energy = 878.0632 kcal/mol (877.7577 without restraints) Performing minimization step: 3833. Total energy = 877.9553 kcal/mol (877.6497 without restraints) Performing minimization step: 3834. Total energy = 877.8475 kcal/mol (877.5418 without restraints) Performing minimization step: 3835. Total energy = 877.7397 kcal/mol (877.4339 without restraints) Performing minimization step: 3836. Total energy = 877.6320 kcal/mol (877.3261 without restraints) Performing minimization step: 3837. Total energy = 877.5243 kcal/mol (877.2184 without restraints) Performing minimization step: 3838. Total energy = 877.4166 kcal/mol (877.1106 without restraints) Performing minimization step: 3839. Total energy = 877.3090 kcal/mol (877.0029 without restraints) Performing minimization step: 3840. Total energy = 877.2015 kcal/mol (876.8953 without restraints) Performing minimization step: 3841. Total energy = 877.0939 kcal/mol (876.7877 without restraints) Performing minimization step: 3842. Total energy = 876.9864 kcal/mol (876.6801 without restraints) Performing minimization step: 3843. Total energy = 876.8792 kcal/mol (876.5728 without restraints) Performing minimization step: 3844. Total energy = 876.7721 kcal/mol (876.4656 without restraints) Performing minimization step: 3845. Total energy = 876.6647 kcal/mol (876.3582 without restraints) Performing minimization step: 3846. Total energy = 876.5574 kcal/mol (876.2508 without restraints) Performing minimization step: 3847. Total energy = 876.4502 kcal/mol (876.1435 without restraints) Performing minimization step: 3848. Total energy = 876.3430 kcal/mol (876.0362 without restraints) Performing minimization step: 3849. Total energy = 876.2361 kcal/mol (875.9294 without restraints) Performing minimization step: 3850. Total energy = 876.1291 kcal/mol (875.8222 without restraints) Performing minimization step: 3851. Total energy = 876.0222 kcal/mol (875.7153 without restraints) Performing minimization step: 3852. Total energy = 875.9155 kcal/mol (875.6084 without restraints) Performing minimization step: 3853. Total energy = 875.8085 kcal/mol (875.5014 without restraints) Performing minimization step: 3854. Total energy = 875.7015 kcal/mol (875.3943 without restraints) Performing minimization step: 3855. Total energy = 875.5946 kcal/mol (875.2873 without restraints) Performing minimization step: 3856. Total energy = 875.4877 kcal/mol (875.1804 without restraints) Performing minimization step: 3857. Total energy = 875.3809 kcal/mol (875.0735 without restraints) Performing minimization step: 3858. Total energy = 875.2741 kcal/mol (874.9666 without restraints) Performing minimization step: 3859. Total energy = 875.1676 kcal/mol (874.8601 without restraints) Performing minimization step: 3860. Total energy = 875.0610 kcal/mol (874.7533 without restraints) Performing minimization step: 3861. Total energy = 874.9543 kcal/mol (874.6466 without restraints) Performing minimization step: 3862. Total energy = 874.8478 kcal/mol (874.5399 without restraints) Performing minimization step: 3863. Total energy = 874.7412 kcal/mol (874.4333 without restraints) Performing minimization step: 3864. Total energy = 874.6347 kcal/mol (874.3267 without restraints) Performing minimization step: 3865. Total energy = 874.5282 kcal/mol (874.2201 without restraints) Performing minimization step: 3866. Total energy = 874.4218 kcal/mol (874.1136 without restraints) Performing minimization step: 3867. Total energy = 874.3154 kcal/mol (874.0072 without restraints) Performing minimization step: 3868. Total energy = 874.2091 kcal/mol (873.9008 without restraints) Performing minimization step: 3869. Total energy = 874.1028 kcal/mol (873.7946 without restraints) Performing minimization step: 3870. Total energy = 873.9967 kcal/mol (873.6882 without restraints) Performing minimization step: 3871. Total energy = 873.8907 kcal/mol (873.5822 without restraints) Performing minimization step: 3872. Total energy = 873.7847 kcal/mol (873.4763 without restraints) Performing minimization step: 3873. Total energy = 873.6788 kcal/mol (873.3701 without restraints) Performing minimization step: 3874. Total energy = 873.5727 kcal/mol (873.2639 without restraints) Performing minimization step: 3875. Total energy = 873.4666 kcal/mol (873.1578 without restraints) Performing minimization step: 3876. Total energy = 873.3606 kcal/mol (873.0517 without restraints) Performing minimization step: 3877. Total energy = 873.2547 kcal/mol (872.9458 without restraints) Performing minimization step: 3878. Total energy = 873.1490 kcal/mol (872.8400 without restraints) Performing minimization step: 3879. Total energy = 873.0432 kcal/mol (872.7341 without restraints) Performing minimization step: 3880. Total energy = 872.9374 kcal/mol (872.6282 without restraints) Performing minimization step: 3881. Total energy = 872.8316 kcal/mol (872.5223 without restraints) Performing minimization step: 3882. Total energy = 872.7261 kcal/mol (872.4167 without restraints) Performing minimization step: 3883. Total energy = 872.6204 kcal/mol (872.3109 without restraints) Performing minimization step: 3884. Total energy = 872.5147 kcal/mol (872.2052 without restraints) Performing minimization step: 3885. Total energy = 872.4090 kcal/mol (872.0994 without restraints) Performing minimization step: 3886. Total energy = 872.3034 kcal/mol (871.9937 without restraints) Performing minimization step: 3887. Total energy = 872.1978 kcal/mol (871.8881 without restraints) Performing minimization step: 3888. Total energy = 872.0923 kcal/mol (871.7824 without restraints) Performing minimization step: 3889. Total energy = 871.9868 kcal/mol (871.6769 without restraints) Performing minimization step: 3890. Total energy = 871.8813 kcal/mol (871.5713 without restraints) Performing minimization step: 3891. Total energy = 871.7759 kcal/mol (871.4658 without restraints) Performing minimization step: 3892. Total energy = 871.6705 kcal/mol (871.3604 without restraints) Performing minimization step: 3893. Total energy = 871.5654 kcal/mol (871.2552 without restraints) Performing minimization step: 3894. Total energy = 871.4604 kcal/mol (871.1501 without restraints) Performing minimization step: 3895. Total energy = 871.3552 kcal/mol (871.0448 without restraints) Performing minimization step: 3896. Total energy = 871.2500 kcal/mol (870.9395 without restraints) Performing minimization step: 3897. Total energy = 871.1448 kcal/mol (870.8343 without restraints) Performing minimization step: 3898. Total energy = 871.0396 kcal/mol (870.7290 without restraints) Performing minimization step: 3899. Total energy = 870.9345 kcal/mol (870.6239 without restraints) Performing minimization step: 3900. Total energy = 870.8295 kcal/mol (870.5187 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 870.7245 kcal/mol (870.4136 without restraints) Performing minimization step: 3902. Total energy = 870.6199 kcal/mol (870.3090 without restraints) Performing minimization step: 3903. Total energy = 870.5152 kcal/mol (870.2042 without restraints) Performing minimization step: 3904. Total energy = 870.4102 kcal/mol (870.0992 without restraints) Performing minimization step: 3905. Total energy = 870.3056 kcal/mol (869.9946 without restraints) Performing minimization step: 3906. Total energy = 870.2009 kcal/mol (869.8896 without restraints) Performing minimization step: 3907. Total energy = 870.0961 kcal/mol (869.7848 without restraints) Performing minimization step: 3908. Total energy = 869.9916 kcal/mol (869.6802 without restraints) Performing minimization step: 3909. Total energy = 869.8868 kcal/mol (869.5754 without restraints) Performing minimization step: 3910. Total energy = 869.7821 kcal/mol (869.4706 without restraints) Performing minimization step: 3911. Total energy = 869.6775 kcal/mol (869.3658 without restraints) Performing minimization step: 3912. Total energy = 869.5728 kcal/mol (869.2611 without restraints) Performing minimization step: 3913. Total energy = 869.4682 kcal/mol (869.1564 without restraints) Performing minimization step: 3914. Total energy = 869.3638 kcal/mol (869.0521 without restraints) Performing minimization step: 3915. Total energy = 869.2594 kcal/mol (868.9475 without restraints) Performing minimization step: 3916. Total energy = 869.1551 kcal/mol (868.8431 without restraints) Performing minimization step: 3917. Total energy = 869.0503 kcal/mol (868.7382 without restraints) Performing minimization step: 3918. Total energy = 868.9458 kcal/mol (868.6335 without restraints) Performing minimization step: 3919. Total energy = 868.8413 kcal/mol (868.5291 without restraints) Performing minimization step: 3920. Total energy = 868.7369 kcal/mol (868.4246 without restraints) Performing minimization step: 3921. Total energy = 868.6326 kcal/mol (868.3202 without restraints) Performing minimization step: 3922. Total energy = 868.5286 kcal/mol (868.2161 without restraints) Performing minimization step: 3923. Total energy = 868.4244 kcal/mol (868.1118 without restraints) Performing minimization step: 3924. Total energy = 868.3201 kcal/mol (868.0075 without restraints) Performing minimization step: 3925. Total energy = 868.2160 kcal/mol (867.9032 without restraints) Performing minimization step: 3926. Total energy = 868.1118 kcal/mol (867.7990 without restraints) Performing minimization step: 3927. Total energy = 868.0077 kcal/mol (867.6948 without restraints) Performing minimization step: 3928. Total energy = 867.9035 kcal/mol (867.5906 without restraints) Performing minimization step: 3929. Total energy = 867.7995 kcal/mol (867.4865 without restraints) Performing minimization step: 3930. Total energy = 867.6958 kcal/mol (867.3826 without restraints) Performing minimization step: 3931. Total energy = 867.5918 kcal/mol (867.2786 without restraints) Performing minimization step: 3932. Total energy = 867.4879 kcal/mol (867.1746 without restraints) Performing minimization step: 3933. Total energy = 867.3842 kcal/mol (867.0708 without restraints) Performing minimization step: 3934. Total energy = 867.2806 kcal/mol (866.9671 without restraints) Performing minimization step: 3935. Total energy = 867.1767 kcal/mol (866.8632 without restraints) Performing minimization step: 3936. Total energy = 867.0730 kcal/mol (866.7594 without restraints) Performing minimization step: 3937. Total energy = 866.9692 kcal/mol (866.6556 without restraints) Performing minimization step: 3938. Total energy = 866.8655 kcal/mol (866.5517 without restraints) Performing minimization step: 3939. Total energy = 866.7618 kcal/mol (866.4480 without restraints) Performing minimization step: 3940. Total energy = 866.6583 kcal/mol (866.3446 without restraints) Performing minimization step: 3941. Total energy = 866.5548 kcal/mol (866.2408 without restraints) Performing minimization step: 3942. Total energy = 866.4510 kcal/mol (866.1369 without restraints) Performing minimization step: 3943. Total energy = 866.3474 kcal/mol (866.0332 without restraints) Performing minimization step: 3944. Total energy = 866.2438 kcal/mol (865.9296 without restraints) Performing minimization step: 3945. Total energy = 866.1403 kcal/mol (865.8260 without restraints) Performing minimization step: 3946. Total energy = 866.0368 kcal/mol (865.7224 without restraints) Performing minimization step: 3947. Total energy = 865.9334 kcal/mol (865.6191 without restraints) Performing minimization step: 3948. Total energy = 865.8301 kcal/mol (865.5156 without restraints) Performing minimization step: 3949. Total energy = 865.7266 kcal/mol (865.4120 without restraints) Performing minimization step: 3950. Total energy = 865.6233 kcal/mol (865.3086 without restraints) Performing minimization step: 3951. Total energy = 865.5199 kcal/mol (865.2052 without restraints) Performing minimization step: 3952. Total energy = 865.4164 kcal/mol (865.1016 without restraints) Performing minimization step: 3953. Total energy = 865.3132 kcal/mol (864.9982 without restraints) Performing minimization step: 3954. Total energy = 865.2099 kcal/mol (864.8949 without restraints) Performing minimization step: 3955. Total energy = 865.1067 kcal/mol (864.7916 without restraints) Performing minimization step: 3956. Total energy = 865.0035 kcal/mol (864.6884 without restraints) Performing minimization step: 3957. Total energy = 864.9010 kcal/mol (864.5857 without restraints) Performing minimization step: 3958. Total energy = 864.7977 kcal/mol (864.4822 without restraints) Performing minimization step: 3959. Total energy = 864.6945 kcal/mol (864.3791 without restraints) Performing minimization step: 3960. Total energy = 864.5914 kcal/mol (864.2759 without restraints) Performing minimization step: 3961. Total energy = 864.4883 kcal/mol (864.1728 without restraints) Performing minimization step: 3962. Total energy = 864.3856 kcal/mol (864.0700 without restraints) Performing minimization step: 3963. Total energy = 864.2823 kcal/mol (863.9666 without restraints) Performing minimization step: 3964. Total energy = 864.1794 kcal/mol (863.8636 without restraints) Performing minimization step: 3965. Total energy = 864.0764 kcal/mol (863.7606 without restraints) Performing minimization step: 3966. Total energy = 863.9732 kcal/mol (863.6572 without restraints) Performing minimization step: 3967. Total energy = 863.8703 kcal/mol (863.5542 without restraints) Performing minimization step: 3968. Total energy = 863.7676 kcal/mol (863.4515 without restraints) Performing minimization step: 3969. Total energy = 863.6647 kcal/mol (863.3486 without restraints) Performing minimization step: 3970. Total energy = 863.5619 kcal/mol (863.2457 without restraints) Performing minimization step: 3971. Total energy = 863.4591 kcal/mol (863.1428 without restraints) Performing minimization step: 3972. Total energy = 863.3564 kcal/mol (863.0399 without restraints) Performing minimization step: 3973. Total energy = 863.2536 kcal/mol (862.9371 without restraints) Performing minimization step: 3974. Total energy = 863.1509 kcal/mol (862.8343 without restraints) Performing minimization step: 3975. Total energy = 863.0481 kcal/mol (862.7315 without restraints) Performing minimization step: 3976. Total energy = 862.9458 kcal/mol (862.6292 without restraints) Performing minimization step: 3977. Total energy = 862.8432 kcal/mol (862.5264 without restraints) Performing minimization step: 3978. Total energy = 862.7407 kcal/mol (862.4238 without restraints) Performing minimization step: 3979. Total energy = 862.6381 kcal/mol (862.3211 without restraints) Performing minimization step: 3980. Total energy = 862.5355 kcal/mol (862.2185 without restraints) Performing minimization step: 3981. Total energy = 862.4327 kcal/mol (862.1156 without restraints) Performing minimization step: 3982. Total energy = 862.3303 kcal/mol (862.0131 without restraints) Performing minimization step: 3983. Total energy = 862.2280 kcal/mol (861.9107 without restraints) Performing minimization step: 3984. Total energy = 862.1255 kcal/mol (861.8081 without restraints) Performing minimization step: 3985. Total energy = 862.0230 kcal/mol (861.7055 without restraints) Performing minimization step: 3986. Total energy = 861.9206 kcal/mol (861.6031 without restraints) Performing minimization step: 3987. Total energy = 861.8184 kcal/mol (861.5008 without restraints) Performing minimization step: 3988. Total energy = 861.7160 kcal/mol (861.3984 without restraints) Performing minimization step: 3989. Total energy = 861.6137 kcal/mol (861.2959 without restraints) Performing minimization step: 3990. Total energy = 861.5113 kcal/mol (861.1935 without restraints) Performing minimization step: 3991. Total energy = 861.4090 kcal/mol (861.0911 without restraints) Performing minimization step: 3992. Total energy = 861.3067 kcal/mol (860.9887 without restraints) Performing minimization step: 3993. Total energy = 861.2042 kcal/mol (860.8861 without restraints) Performing minimization step: 3994. Total energy = 861.1019 kcal/mol (860.7838 without restraints) Performing minimization step: 3995. Total energy = 860.9997 kcal/mol (860.6815 without restraints) Performing minimization step: 3996. Total energy = 860.8975 kcal/mol (860.5792 without restraints) Performing minimization step: 3997. Total energy = 860.7954 kcal/mol (860.4770 without restraints) Performing minimization step: 3998. Total energy = 860.6933 kcal/mol (860.3750 without restraints) Performing minimization step: 3999. Total energy = 860.5916 kcal/mol (860.2730 without restraints) Performing minimization step: 4000. Total energy = 860.4898 kcal/mol (860.1712 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 860.3877 kcal/mol (860.0690 without restraints) Performing minimization step: 4002. Total energy = 860.2856 kcal/mol (859.9668 without restraints) Performing minimization step: 4003. Total energy = 860.1834 kcal/mol (859.8646 without restraints) Performing minimization step: 4004. Total energy = 860.0813 kcal/mol (859.7624 without restraints) Performing minimization step: 4005. Total energy = 859.9793 kcal/mol (859.6603 without restraints) Performing minimization step: 4006. Total energy = 859.8772 kcal/mol (859.5581 without restraints) Performing minimization step: 4007. Total energy = 859.7752 kcal/mol (859.4560 without restraints) Performing minimization step: 4008. Total energy = 859.6731 kcal/mol (859.3539 without restraints) Performing minimization step: 4009. Total energy = 859.5711 kcal/mol (859.2518 without restraints) Performing minimization step: 4010. Total energy = 859.4689 kcal/mol (859.1495 without restraints) Performing minimization step: 4011. Total energy = 859.3669 kcal/mol (859.0475 without restraints) Performing minimization step: 4012. Total energy = 859.2650 kcal/mol (858.9454 without restraints) Performing minimization step: 4013. Total energy = 859.1630 kcal/mol (858.8434 without restraints) Performing minimization step: 4014. Total energy = 859.0611 kcal/mol (858.7414 without restraints) Performing minimization step: 4015. Total energy = 858.9591 kcal/mol (858.6393 without restraints) Performing minimization step: 4016. Total energy = 858.8572 kcal/mol (858.5374 without restraints) Performing minimization step: 4017. Total energy = 858.7553 kcal/mol (858.4354 without restraints) Performing minimization step: 4018. Total energy = 858.6534 kcal/mol (858.3334 without restraints) Performing minimization step: 4019. Total energy = 858.5515 kcal/mol (858.2314 without restraints) Performing minimization step: 4020. Total energy = 858.4497 kcal/mol (858.1295 without restraints) Performing minimization step: 4021. Total energy = 858.3479 kcal/mol (858.0276 without restraints) Performing minimization step: 4022. Total energy = 858.2461 kcal/mol (857.9258 without restraints) Performing minimization step: 4023. Total energy = 858.1443 kcal/mol (857.8239 without restraints) Performing minimization step: 4024. Total energy = 858.0425 kcal/mol (857.7220 without restraints) Performing minimization step: 4025. Total energy = 857.9409 kcal/mol (857.6203 without restraints) Performing minimization step: 4026. Total energy = 857.8390 kcal/mol (857.5182 without restraints) Performing minimization step: 4027. Total energy = 857.7371 kcal/mol (857.4164 without restraints) Performing minimization step: 4028. Total energy = 857.6354 kcal/mol (857.3147 without restraints) Performing minimization step: 4029. Total energy = 857.5337 kcal/mol (857.2128 without restraints) Performing minimization step: 4030. Total energy = 857.4320 kcal/mol (857.1110 without restraints) Performing minimization step: 4031. Total energy = 857.3302 kcal/mol (857.0092 without restraints) Performing minimization step: 4032. Total energy = 857.2285 kcal/mol (856.9074 without restraints) Performing minimization step: 4033. Total energy = 857.1272 kcal/mol (856.8060 without restraints) Performing minimization step: 4034. Total energy = 857.0253 kcal/mol (856.7040 without restraints) Performing minimization step: 4035. Total energy = 856.9236 kcal/mol (856.6022 without restraints) Performing minimization step: 4036. Total energy = 856.8219 kcal/mol (856.5004 without restraints) Performing minimization step: 4037. Total energy = 856.7203 kcal/mol (856.3988 without restraints) Performing minimization step: 4038. Total energy = 856.6186 kcal/mol (856.2971 without restraints) Performing minimization step: 4039. Total energy = 856.5169 kcal/mol (856.1953 without restraints) Performing minimization step: 4040. Total energy = 856.4152 kcal/mol (856.0935 without restraints) Performing minimization step: 4041. Total energy = 856.3140 kcal/mol (855.9921 without restraints) Performing minimization step: 4042. Total energy = 856.2123 kcal/mol (855.8904 without restraints) Performing minimization step: 4043. Total energy = 856.1106 kcal/mol (855.7888 without restraints) Performing minimization step: 4044. Total energy = 856.0091 kcal/mol (855.6870 without restraints) Performing minimization step: 4045. Total energy = 855.9074 kcal/mol (855.5853 without restraints) Performing minimization step: 4046. Total energy = 855.8057 kcal/mol (855.4835 without restraints) Performing minimization step: 4047. Total energy = 855.7040 kcal/mol (855.3817 without restraints) Performing minimization step: 4048. Total energy = 855.6026 kcal/mol (855.2802 without restraints) Performing minimization step: 4049. Total energy = 855.5010 kcal/mol (855.1785 without restraints) Performing minimization step: 4050. Total energy = 855.3995 kcal/mol (855.0770 without restraints) Performing minimization step: 4051. Total energy = 855.2979 kcal/mol (854.9752 without restraints) Performing minimization step: 4052. Total energy = 855.1964 kcal/mol (854.8737 without restraints) Performing minimization step: 4053. Total energy = 855.0947 kcal/mol (854.7719 without restraints) Performing minimization step: 4054. Total energy = 854.9930 kcal/mol (854.6701 without restraints) Performing minimization step: 4055. Total energy = 854.8911 kcal/mol (854.5681 without restraints) Performing minimization step: 4056. Total energy = 854.7894 kcal/mol (854.4664 without restraints) Performing minimization step: 4057. Total energy = 854.6877 kcal/mol (854.3646 without restraints) Performing minimization step: 4058. Total energy = 854.5862 kcal/mol (854.2630 without restraints) Performing minimization step: 4059. Total energy = 854.4845 kcal/mol (854.1613 without restraints) Performing minimization step: 4060. Total energy = 854.3828 kcal/mol (854.0595 without restraints) Performing minimization step: 4061. Total energy = 854.2811 kcal/mol (853.9577 without restraints) Performing minimization step: 4062. Total energy = 854.1794 kcal/mol (853.8559 without restraints) Performing minimization step: 4063. Total energy = 854.0777 kcal/mol (853.7541 without restraints) Performing minimization step: 4064. Total energy = 853.9759 kcal/mol (853.6523 without restraints) Performing minimization step: 4065. Total energy = 853.8742 kcal/mol (853.5504 without restraints) Performing minimization step: 4066. Total energy = 853.7724 kcal/mol (853.4486 without restraints) Performing minimization step: 4067. Total energy = 853.6708 kcal/mol (853.3470 without restraints) Performing minimization step: 4068. Total energy = 853.5691 kcal/mol (853.2451 without restraints) Performing minimization step: 4069. Total energy = 853.4673 kcal/mol (853.1433 without restraints) Performing minimization step: 4070. Total energy = 853.3657 kcal/mol (853.0416 without restraints) Performing minimization step: 4071. Total energy = 853.2639 kcal/mol (852.9397 without restraints) Performing minimization step: 4072. Total energy = 853.1624 kcal/mol (852.8381 without restraints) Performing minimization step: 4073. Total energy = 853.0606 kcal/mol (852.7363 without restraints) Performing minimization step: 4074. Total energy = 852.9588 kcal/mol (852.6344 without restraints) Performing minimization step: 4075. Total energy = 852.8572 kcal/mol (852.5327 without restraints) Performing minimization step: 4076. Total energy = 852.7553 kcal/mol (852.4307 without restraints) Performing minimization step: 4077. Total energy = 852.6535 kcal/mol (852.3290 without restraints) Performing minimization step: 4078. Total energy = 852.5516 kcal/mol (852.2268 without restraints) Performing minimization step: 4079. Total energy = 852.4497 kcal/mol (852.1249 without restraints) Performing minimization step: 4080. Total energy = 852.3478 kcal/mol (852.0229 without restraints) Performing minimization step: 4081. Total energy = 852.2464 kcal/mol (851.9214 without restraints) Performing minimization step: 4082. Total energy = 852.1445 kcal/mol (851.8194 without restraints) Performing minimization step: 4083. Total energy = 852.0428 kcal/mol (851.7179 without restraints) Performing minimization step: 4084. Total energy = 851.9410 kcal/mol (851.6158 without restraints) Performing minimization step: 4085. Total energy = 851.8390 kcal/mol (851.5138 without restraints) Performing minimization step: 4086. Total energy = 851.7372 kcal/mol (851.4118 without restraints) Performing minimization step: 4087. Total energy = 851.6351 kcal/mol (851.3096 without restraints) Performing minimization step: 4088. Total energy = 851.5331 kcal/mol (851.2076 without restraints) Performing minimization step: 4089. Total energy = 851.4312 kcal/mol (851.1057 without restraints) Performing minimization step: 4090. Total energy = 851.3292 kcal/mol (851.0035 without restraints) Performing minimization step: 4091. Total energy = 851.2269 kcal/mol (850.9011 without restraints) Performing minimization step: 4092. Total energy = 851.1248 kcal/mol (850.7989 without restraints) Performing minimization step: 4093. Total energy = 851.0226 kcal/mol (850.6967 without restraints) Performing minimization step: 4094. Total energy = 850.9204 kcal/mol (850.5945 without restraints) Performing minimization step: 4095. Total energy = 850.8183 kcal/mol (850.4922 without restraints) Performing minimization step: 4096. Total energy = 850.7163 kcal/mol (850.3901 without restraints) Performing minimization step: 4097. Total energy = 850.6140 kcal/mol (850.2878 without restraints) Performing minimization step: 4098. Total energy = 850.5119 kcal/mol (850.1856 without restraints) Performing minimization step: 4099. Total energy = 850.4097 kcal/mol (850.0833 without restraints) Performing minimization step: 4100. Total energy = 850.3074 kcal/mol (849.9809 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 850.2050 kcal/mol (849.8785 without restraints) Performing minimization step: 4102. Total energy = 850.1027 kcal/mol (849.7760 without restraints) Performing minimization step: 4103. Total energy = 850.0003 kcal/mol (849.6736 without restraints) Performing minimization step: 4104. Total energy = 849.8978 kcal/mol (849.5711 without restraints) Performing minimization step: 4105. Total energy = 849.7954 kcal/mol (849.4685 without restraints) Performing minimization step: 4106. Total energy = 849.6931 kcal/mol (849.3662 without restraints) Performing minimization step: 4107. Total energy = 849.5906 kcal/mol (849.2636 without restraints) Performing minimization step: 4108. Total energy = 849.4881 kcal/mol (849.1610 without restraints) Performing minimization step: 4109. Total energy = 849.3857 kcal/mol (849.0585 without restraints) Performing minimization step: 4110. Total energy = 849.2831 kcal/mol (848.9559 without restraints) Performing minimization step: 4111. Total energy = 849.1805 kcal/mol (848.8532 without restraints) Performing minimization step: 4112. Total energy = 849.0777 kcal/mol (848.7502 without restraints) Performing minimization step: 4113. Total energy = 848.9749 kcal/mol (848.6474 without restraints) Performing minimization step: 4114. Total energy = 848.8722 kcal/mol (848.5446 without restraints) Performing minimization step: 4115. Total energy = 848.7694 kcal/mol (848.4417 without restraints) Performing minimization step: 4116. Total energy = 848.6666 kcal/mol (848.3388 without restraints) Performing minimization step: 4117. Total energy = 848.5637 kcal/mol (848.2359 without restraints) Performing minimization step: 4118. Total energy = 848.4610 kcal/mol (848.1331 without restraints) Performing minimization step: 4119. Total energy = 848.3580 kcal/mol (848.0301 without restraints) Performing minimization step: 4120. Total energy = 848.2550 kcal/mol (847.9270 without restraints) Performing minimization step: 4121. Total energy = 848.1522 kcal/mol (847.8241 without restraints) Performing minimization step: 4122. Total energy = 848.0491 kcal/mol (847.7209 without restraints) Performing minimization step: 4123. Total energy = 847.9465 kcal/mol (847.6183 without restraints) Performing minimization step: 4124. Total energy = 847.8434 kcal/mol (847.5151 without restraints) Performing minimization step: 4125. Total energy = 847.7402 kcal/mol (847.4118 without restraints) Performing minimization step: 4126. Total energy = 847.6374 kcal/mol (847.3089 without restraints) Performing minimization step: 4127. Total energy = 847.5338 kcal/mol (847.2053 without restraints) Performing minimization step: 4128. Total energy = 847.4305 kcal/mol (847.1018 without restraints) Performing minimization step: 4129. Total energy = 847.3273 kcal/mol (846.9986 without restraints) Performing minimization step: 4130. Total energy = 847.2239 kcal/mol (846.8951 without restraints) Performing minimization step: 4131. Total energy = 847.1204 kcal/mol (846.7915 without restraints) Performing minimization step: 4132. Total energy = 847.0169 kcal/mol (846.6879 without restraints) Performing minimization step: 4133. Total energy = 846.9133 kcal/mol (846.5842 without restraints) Performing minimization step: 4134. Total energy = 846.8096 kcal/mol (846.4805 without restraints) Performing minimization step: 4135. Total energy = 846.7059 kcal/mol (846.3767 without restraints) Performing minimization step: 4136. Total energy = 846.6024 kcal/mol (846.2731 without restraints) Performing minimization step: 4137. Total energy = 846.4986 kcal/mol (846.1692 without restraints) Performing minimization step: 4138. Total energy = 846.3947 kcal/mol (846.0653 without restraints) Performing minimization step: 4139. Total energy = 846.2910 kcal/mol (845.9615 without restraints) Performing minimization step: 4140. Total energy = 846.1871 kcal/mol (845.8575 without restraints) Performing minimization step: 4141. Total energy = 846.0830 kcal/mol (845.7534 without restraints) Performing minimization step: 4142. Total energy = 845.9789 kcal/mol (845.6492 without restraints) Performing minimization step: 4143. Total energy = 845.8748 kcal/mol (845.5450 without restraints) Performing minimization step: 4144. Total energy = 845.7706 kcal/mol (845.4407 without restraints) Performing minimization step: 4145. Total energy = 845.6663 kcal/mol (845.3363 without restraints) Performing minimization step: 4146. Total energy = 845.5617 kcal/mol (845.2316 without restraints) Performing minimization step: 4147. Total energy = 845.4574 kcal/mol (845.1273 without restraints) Performing minimization step: 4148. Total energy = 845.3530 kcal/mol (845.0228 without restraints) Performing minimization step: 4149. Total energy = 845.2485 kcal/mol (844.9182 without restraints) Performing minimization step: 4150. Total energy = 845.1439 kcal/mol (844.8135 without restraints) Performing minimization step: 4151. Total energy = 845.0392 kcal/mol (844.7088 without restraints) Performing minimization step: 4152. Total energy = 844.9347 kcal/mol (844.6042 without restraints) Performing minimization step: 4153. Total energy = 844.8301 kcal/mol (844.4995 without restraints) Performing minimization step: 4154. Total energy = 844.7248 kcal/mol (844.3941 without restraints) Performing minimization step: 4155. Total energy = 844.6199 kcal/mol (844.2891 without restraints) Performing minimization step: 4156. Total energy = 844.5149 kcal/mol (844.1840 without restraints) Performing minimization step: 4157. Total energy = 844.4096 kcal/mol (844.0786 without restraints) Performing minimization step: 4158. Total energy = 844.3044 kcal/mol (843.9734 without restraints) Performing minimization step: 4159. Total energy = 844.1991 kcal/mol (843.8680 without restraints) Performing minimization step: 4160. Total energy = 844.0938 kcal/mol (843.7626 without restraints) Performing minimization step: 4161. Total energy = 843.9884 kcal/mol (843.6571 without restraints) Performing minimization step: 4162. Total energy = 843.8829 kcal/mol (843.5516 without restraints) Performing minimization step: 4163. Total energy = 843.7771 kcal/mol (843.4457 without restraints) Performing minimization step: 4164. Total energy = 843.6717 kcal/mol (843.3402 without restraints) Performing minimization step: 4165. Total energy = 843.5659 kcal/mol (843.2344 without restraints) Performing minimization step: 4166. Total energy = 843.4601 kcal/mol (843.1285 without restraints) Performing minimization step: 4167. Total energy = 843.3543 kcal/mol (843.0225 without restraints) Performing minimization step: 4168. Total energy = 843.2483 kcal/mol (842.9165 without restraints) Performing minimization step: 4169. Total energy = 843.1422 kcal/mol (842.8103 without restraints) Performing minimization step: 4170. Total energy = 843.0359 kcal/mol (842.7040 without restraints) Performing minimization step: 4171. Total energy = 842.9297 kcal/mol (842.5977 without restraints) Performing minimization step: 4172. Total energy = 842.8231 kcal/mol (842.4910 without restraints) Performing minimization step: 4173. Total energy = 842.7167 kcal/mol (842.3845 without restraints) Performing minimization step: 4174. Total energy = 842.6102 kcal/mol (842.2780 without restraints) Performing minimization step: 4175. Total energy = 842.5036 kcal/mol (842.1713 without restraints) Performing minimization step: 4176. Total energy = 842.3970 kcal/mol (842.0645 without restraints) Performing minimization step: 4177. Total energy = 842.2903 kcal/mol (841.9579 without restraints) Performing minimization step: 4178. Total energy = 842.1835 kcal/mol (841.8509 without restraints) Performing minimization step: 4179. Total energy = 842.0764 kcal/mol (841.7437 without restraints) Performing minimization step: 4180. Total energy = 841.9692 kcal/mol (841.6365 without restraints) Performing minimization step: 4181. Total energy = 841.8621 kcal/mol (841.5292 without restraints) Performing minimization step: 4182. Total energy = 841.7548 kcal/mol (841.4219 without restraints) Performing minimization step: 4183. Total energy = 841.6474 kcal/mol (841.3144 without restraints) Performing minimization step: 4184. Total energy = 841.5400 kcal/mol (841.2069 without restraints) Performing minimization step: 4185. Total energy = 841.4324 kcal/mol (841.0992 without restraints) Performing minimization step: 4186. Total energy = 841.3244 kcal/mol (840.9912 without restraints) Performing minimization step: 4187. Total energy = 841.2167 kcal/mol (840.8833 without restraints) Performing minimization step: 4188. Total energy = 841.1087 kcal/mol (840.7754 without restraints) Performing minimization step: 4189. Total energy = 841.0008 kcal/mol (840.6673 without restraints) Performing minimization step: 4190. Total energy = 840.8927 kcal/mol (840.5591 without restraints) Performing minimization step: 4191. Total energy = 840.7845 kcal/mol (840.4508 without restraints) Performing minimization step: 4192. Total energy = 840.6761 kcal/mol (840.3424 without restraints) Performing minimization step: 4193. Total energy = 840.5679 kcal/mol (840.2341 without restraints) Performing minimization step: 4194. Total energy = 840.4593 kcal/mol (840.1254 without restraints) Performing minimization step: 4195. Total energy = 840.3506 kcal/mol (840.0167 without restraints) Performing minimization step: 4196. Total energy = 840.2418 kcal/mol (839.9078 without restraints) Performing minimization step: 4197. Total energy = 840.1329 kcal/mol (839.7988 without restraints) Performing minimization step: 4198. Total energy = 840.0239 kcal/mol (839.6899 without restraints) Performing minimization step: 4199. Total energy = 839.9155 kcal/mol (839.5813 without restraints) Performing minimization step: 4200. Total energy = 839.8062 kcal/mol (839.4719 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 839.6971 kcal/mol (839.3627 without restraints) Performing minimization step: 4202. Total energy = 839.5876 kcal/mol (839.2531 without restraints) Performing minimization step: 4203. Total energy = 839.4780 kcal/mol (839.1434 without restraints) Performing minimization step: 4204. Total energy = 839.3682 kcal/mol (839.0336 without restraints) Performing minimization step: 4205. Total energy = 839.2585 kcal/mol (838.9238 without restraints) Performing minimization step: 4206. Total energy = 839.1485 kcal/mol (838.8137 without restraints) Performing minimization step: 4207. Total energy = 839.0383 kcal/mol (838.7034 without restraints) Performing minimization step: 4208. Total energy = 838.9281 kcal/mol (838.5931 without restraints) Performing minimization step: 4209. Total energy = 838.8176 kcal/mol (838.4826 without restraints) Performing minimization step: 4210. Total energy = 838.7069 kcal/mol (838.3717 without restraints) Performing minimization step: 4211. Total energy = 838.5962 kcal/mol (838.2610 without restraints) Performing minimization step: 4212. Total energy = 838.4854 kcal/mol (838.1501 without restraints) Performing minimization step: 4213. Total energy = 838.3744 kcal/mol (838.0390 without restraints) Performing minimization step: 4214. Total energy = 838.2633 kcal/mol (837.9278 without restraints) Performing minimization step: 4215. Total energy = 838.1520 kcal/mol (837.8165 without restraints) Performing minimization step: 4216. Total energy = 838.0407 kcal/mol (837.7051 without restraints) Performing minimization step: 4217. Total energy = 837.9292 kcal/mol (837.5935 without restraints) Performing minimization step: 4218. Total energy = 837.8175 kcal/mol (837.4818 without restraints) Performing minimization step: 4219. Total energy = 837.7057 kcal/mol (837.3699 without restraints) Performing minimization step: 4220. Total energy = 837.5937 kcal/mol (837.2578 without restraints) Performing minimization step: 4221. Total energy = 837.4816 kcal/mol (837.1456 without restraints) Performing minimization step: 4222. Total energy = 837.3694 kcal/mol (837.0333 without restraints) Performing minimization step: 4223. Total energy = 837.2571 kcal/mol (836.9210 without restraints) Performing minimization step: 4224. Total energy = 837.1446 kcal/mol (836.8082 without restraints) Performing minimization step: 4225. Total energy = 837.0318 kcal/mol (836.6954 without restraints) Performing minimization step: 4226. Total energy = 836.9190 kcal/mol (836.5828 without restraints) Performing minimization step: 4227. Total energy = 836.8062 kcal/mol (836.4697 without restraints) Performing minimization step: 4228. Total energy = 836.6930 kcal/mol (836.3565 without restraints) Performing minimization step: 4229. Total energy = 836.5797 kcal/mol (836.2431 without restraints) Performing minimization step: 4230. Total energy = 836.4662 kcal/mol (836.1295 without restraints) Performing minimization step: 4231. Total energy = 836.3528 kcal/mol (836.0160 without restraints) Performing minimization step: 4232. Total energy = 836.2390 kcal/mol (835.9022 without restraints) Performing minimization step: 4233. Total energy = 836.1249 kcal/mol (835.7879 without restraints) Performing minimization step: 4234. Total energy = 836.0109 kcal/mol (835.6739 without restraints) Performing minimization step: 4235. Total energy = 835.8965 kcal/mol (835.5594 without restraints) Performing minimization step: 4236. Total energy = 835.7821 kcal/mol (835.4449 without restraints) Performing minimization step: 4237. Total energy = 835.6674 kcal/mol (835.3302 without restraints) Performing minimization step: 4238. Total energy = 835.5527 kcal/mol (835.2153 without restraints) Performing minimization step: 4239. Total energy = 835.4377 kcal/mol (835.1003 without restraints) Performing minimization step: 4240. Total energy = 835.3226 kcal/mol (834.9851 without restraints) Performing minimization step: 4241. Total energy = 835.2076 kcal/mol (834.8700 without restraints) Performing minimization step: 4242. Total energy = 835.0921 kcal/mol (834.7545 without restraints) Performing minimization step: 4243. Total energy = 834.9767 kcal/mol (834.6392 without restraints) Performing minimization step: 4244. Total energy = 834.8611 kcal/mol (834.5233 without restraints) Performing minimization step: 4245. Total energy = 834.7451 kcal/mol (834.4072 without restraints) Performing minimization step: 4246. Total energy = 834.6288 kcal/mol (834.2908 without restraints) Performing minimization step: 4247. Total energy = 834.5125 kcal/mol (834.1744 without restraints) Performing minimization step: 4248. Total energy = 834.3960 kcal/mol (834.0579 without restraints) Performing minimization step: 4249. Total energy = 834.2795 kcal/mol (833.9413 without restraints) Performing minimization step: 4250. Total energy = 834.1627 kcal/mol (833.8244 without restraints) Performing minimization step: 4251. Total energy = 834.0454 kcal/mol (833.7070 without restraints) Performing minimization step: 4252. Total energy = 833.9286 kcal/mol (833.5901 without restraints) Performing minimization step: 4253. Total energy = 833.8112 kcal/mol (833.4727 without restraints) Performing minimization step: 4254. Total energy = 833.6936 kcal/mol (833.3550 without restraints) Performing minimization step: 4255. Total energy = 833.5758 kcal/mol (833.2371 without restraints) Performing minimization step: 4256. Total energy = 833.4581 kcal/mol (833.1193 without restraints) Performing minimization step: 4257. Total energy = 833.3399 kcal/mol (833.0011 without restraints) Performing minimization step: 4258. Total energy = 833.2216 kcal/mol (832.8827 without restraints) Performing minimization step: 4259. Total energy = 833.1031 kcal/mol (832.7641 without restraints) Performing minimization step: 4260. Total energy = 832.9844 kcal/mol (832.6453 without restraints) Performing minimization step: 4261. Total energy = 832.8656 kcal/mol (832.5265 without restraints) Performing minimization step: 4262. Total energy = 832.7466 kcal/mol (832.4074 without restraints) Performing minimization step: 4263. Total energy = 832.6273 kcal/mol (832.2880 without restraints) Performing minimization step: 4264. Total energy = 832.5079 kcal/mol (832.1685 without restraints) Performing minimization step: 4265. Total energy = 832.3882 kcal/mol (832.0487 without restraints) Performing minimization step: 4266. Total energy = 832.2684 kcal/mol (831.9288 without restraints) Performing minimization step: 4267. Total energy = 832.1484 kcal/mol (831.8087 without restraints) Performing minimization step: 4268. Total energy = 832.0281 kcal/mol (831.6884 without restraints) Performing minimization step: 4269. Total energy = 831.9077 kcal/mol (831.5679 without restraints) Performing minimization step: 4270. Total energy = 831.7870 kcal/mol (831.4472 without restraints) Performing minimization step: 4271. Total energy = 831.6662 kcal/mol (831.3263 without restraints) Performing minimization step: 4272. Total energy = 831.5454 kcal/mol (831.2053 without restraints) Performing minimization step: 4273. Total energy = 831.4241 kcal/mol (831.0840 without restraints) Performing minimization step: 4274. Total energy = 831.3031 kcal/mol (830.9629 without restraints) Performing minimization step: 4275. Total energy = 831.1815 kcal/mol (830.8412 without restraints) Performing minimization step: 4276. Total energy = 831.0597 kcal/mol (830.7193 without restraints) Performing minimization step: 4277. Total energy = 830.9376 kcal/mol (830.5972 without restraints) Performing minimization step: 4278. Total energy = 830.8154 kcal/mol (830.4749 without restraints) Performing minimization step: 4279. Total energy = 830.6930 kcal/mol (830.3524 without restraints) Performing minimization step: 4280. Total energy = 830.5706 kcal/mol (830.2299 without restraints) Performing minimization step: 4281. Total energy = 830.4477 kcal/mol (830.1070 without restraints) Performing minimization step: 4282. Total energy = 830.3247 kcal/mol (829.9838 without restraints) Performing minimization step: 4283. Total energy = 830.2014 kcal/mol (829.8605 without restraints) Performing minimization step: 4284. Total energy = 830.0781 kcal/mol (829.7372 without restraints) Performing minimization step: 4285. Total energy = 829.9546 kcal/mol (829.6135 without restraints) Performing minimization step: 4286. Total energy = 829.8307 kcal/mol (829.4896 without restraints) Performing minimization step: 4287. Total energy = 829.7067 kcal/mol (829.3655 without restraints) Performing minimization step: 4288. Total energy = 829.5824 kcal/mol (829.2411 without restraints) Performing minimization step: 4289. Total energy = 829.4580 kcal/mol (829.1166 without restraints) Performing minimization step: 4290. Total energy = 829.3333 kcal/mol (828.9918 without restraints) Performing minimization step: 4291. Total energy = 829.2084 kcal/mol (828.8669 without restraints) Performing minimization step: 4292. Total energy = 829.0833 kcal/mol (828.7417 without restraints) Performing minimization step: 4293. Total energy = 828.9580 kcal/mol (828.6163 without restraints) Performing minimization step: 4294. Total energy = 828.8324 kcal/mol (828.4907 without restraints) Performing minimization step: 4295. Total energy = 828.7067 kcal/mol (828.3649 without restraints) Performing minimization step: 4296. Total energy = 828.5808 kcal/mol (828.2390 without restraints) Performing minimization step: 4297. Total energy = 828.4551 kcal/mol (828.1132 without restraints) Performing minimization step: 4298. Total energy = 828.3289 kcal/mol (827.9868 without restraints) Performing minimization step: 4299. Total energy = 828.2023 kcal/mol (827.8602 without restraints) Performing minimization step: 4300. Total energy = 828.0757 kcal/mol (827.7335 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 827.9490 kcal/mol (827.6067 without restraints) Performing minimization step: 4302. Total energy = 827.8218 kcal/mol (827.4794 without restraints) Performing minimization step: 4303. Total energy = 827.6941 kcal/mol (827.3517 without restraints) Performing minimization step: 4304. Total energy = 827.5665 kcal/mol (827.2240 without restraints) Performing minimization step: 4305. Total energy = 827.4387 kcal/mol (827.0961 without restraints) Performing minimization step: 4306. Total energy = 827.3107 kcal/mol (826.9681 without restraints) Performing minimization step: 4307. Total energy = 827.1825 kcal/mol (826.8398 without restraints) Performing minimization step: 4308. Total energy = 827.0541 kcal/mol (826.7112 without restraints) Performing minimization step: 4309. Total energy = 826.9257 kcal/mol (826.5830 without restraints) Performing minimization step: 4310. Total energy = 826.7970 kcal/mol (826.4540 without restraints) Performing minimization step: 4311. Total energy = 826.6679 kcal/mol (826.3249 without restraints) Performing minimization step: 4312. Total energy = 826.5385 kcal/mol (826.1953 without restraints) Performing minimization step: 4313. Total energy = 826.4090 kcal/mol (826.0658 without restraints) Performing minimization step: 4314. Total energy = 826.2793 kcal/mol (825.9361 without restraints) Performing minimization step: 4315. Total energy = 826.1498 kcal/mol (825.8065 without restraints) Performing minimization step: 4316. Total energy = 826.0197 kcal/mol (825.6763 without restraints) Performing minimization step: 4317. Total energy = 825.8894 kcal/mol (825.5459 without restraints) Performing minimization step: 4318. Total energy = 825.7588 kcal/mol (825.4152 without restraints) Performing minimization step: 4319. Total energy = 825.6281 kcal/mol (825.2844 without restraints) Performing minimization step: 4320. Total energy = 825.4972 kcal/mol (825.1535 without restraints) Performing minimization step: 4321. Total energy = 825.3660 kcal/mol (825.0223 without restraints) Performing minimization step: 4322. Total energy = 825.2347 kcal/mol (824.8909 without restraints) Performing minimization step: 4323. Total energy = 825.1032 kcal/mol (824.7593 without restraints) Performing minimization step: 4324. Total energy = 824.9715 kcal/mol (824.6275 without restraints) Performing minimization step: 4325. Total energy = 824.8396 kcal/mol (824.4956 without restraints) Performing minimization step: 4326. Total energy = 824.7075 kcal/mol (824.3634 without restraints) Performing minimization step: 4327. Total energy = 824.5752 kcal/mol (824.2310 without restraints) Performing minimization step: 4328. Total energy = 824.4427 kcal/mol (824.0984 without restraints) Performing minimization step: 4329. Total energy = 824.3101 kcal/mol (823.9657 without restraints) Performing minimization step: 4330. Total energy = 824.1772 kcal/mol (823.8327 without restraints) Performing minimization step: 4331. Total energy = 824.0441 kcal/mol (823.6996 without restraints) Performing minimization step: 4332. Total energy = 823.9108 kcal/mol (823.5662 without restraints) Performing minimization step: 4333. Total energy = 823.7775 kcal/mol (823.4329 without restraints) Performing minimization step: 4334. Total energy = 823.6441 kcal/mol (823.2994 without restraints) Performing minimization step: 4335. Total energy = 823.5102 kcal/mol (823.1655 without restraints) Performing minimization step: 4336. Total energy = 823.3762 kcal/mol (823.0314 without restraints) Performing minimization step: 4337. Total energy = 823.2420 kcal/mol (822.8971 without restraints) Performing minimization step: 4338. Total energy = 823.1076 kcal/mol (822.7626 without restraints) Performing minimization step: 4339. Total energy = 822.9730 kcal/mol (822.6279 without restraints) Performing minimization step: 4340. Total energy = 822.8382 kcal/mol (822.4930 without restraints) Performing minimization step: 4341. Total energy = 822.7034 kcal/mol (822.3582 without restraints) Performing minimization step: 4342. Total energy = 822.5682 kcal/mol (822.2230 without restraints) Performing minimization step: 4343. Total energy = 822.4329 kcal/mol (822.0876 without restraints) Performing minimization step: 4344. Total energy = 822.2974 kcal/mol (821.9520 without restraints) Performing minimization step: 4345. Total energy = 822.1617 kcal/mol (821.8163 without restraints) Performing minimization step: 4346. Total energy = 822.0258 kcal/mol (821.6803 without restraints) Performing minimization step: 4347. Total energy = 821.8898 kcal/mol (821.5442 without restraints) Performing minimization step: 4348. Total energy = 821.7535 kcal/mol (821.4079 without restraints) Performing minimization step: 4349. Total energy = 821.6171 kcal/mol (821.2714 without restraints) Performing minimization step: 4350. Total energy = 821.4805 kcal/mol (821.1347 without restraints) Performing minimization step: 4351. Total energy = 821.3437 kcal/mol (820.9979 without restraints) Performing minimization step: 4352. Total energy = 821.2069 kcal/mol (820.8609 without restraints) Performing minimization step: 4353. Total energy = 821.0700 kcal/mol (820.7240 without restraints) Performing minimization step: 4354. Total energy = 820.9328 kcal/mol (820.5867 without restraints) Performing minimization step: 4355. Total energy = 820.7955 kcal/mol (820.4495 without restraints) Performing minimization step: 4356. Total energy = 820.6580 kcal/mol (820.3119 without restraints) Performing minimization step: 4357. Total energy = 820.5203 kcal/mol (820.1741 without restraints) Performing minimization step: 4358. Total energy = 820.3824 kcal/mol (820.0361 without restraints) Performing minimization step: 4359. Total energy = 820.2444 kcal/mol (819.8980 without restraints) Performing minimization step: 4360. Total energy = 820.1061 kcal/mol (819.7597 without restraints) Performing minimization step: 4361. Total energy = 819.9680 kcal/mol (819.6215 without restraints) Performing minimization step: 4362. Total energy = 819.8295 kcal/mol (819.4829 without restraints) Performing minimization step: 4363. Total energy = 819.6908 kcal/mol (819.3442 without restraints) Performing minimization step: 4364. Total energy = 819.5520 kcal/mol (819.2053 without restraints) Performing minimization step: 4365. Total energy = 819.4130 kcal/mol (819.0663 without restraints) Performing minimization step: 4366. Total energy = 819.2739 kcal/mol (818.9271 without restraints) Performing minimization step: 4367. Total energy = 819.1345 kcal/mol (818.7874 without restraints) Performing minimization step: 4368. Total energy = 818.9949 kcal/mol (818.6480 without restraints) Performing minimization step: 4369. Total energy = 818.8554 kcal/mol (818.5084 without restraints) Performing minimization step: 4370. Total energy = 818.7158 kcal/mol (818.3689 without restraints) Performing minimization step: 4371. Total energy = 818.5761 kcal/mol (818.2290 without restraints) Performing minimization step: 4372. Total energy = 818.4362 kcal/mol (818.0890 without restraints) Performing minimization step: 4373. Total energy = 818.2961 kcal/mol (817.9489 without restraints) Performing minimization step: 4374. Total energy = 818.1559 kcal/mol (817.8087 without restraints) Performing minimization step: 4375. Total energy = 818.0156 kcal/mol (817.6683 without restraints) Performing minimization step: 4376. Total energy = 817.8751 kcal/mol (817.5278 without restraints) Performing minimization step: 4377. Total energy = 817.7346 kcal/mol (817.3872 without restraints) Performing minimization step: 4378. Total energy = 817.5939 kcal/mol (817.2464 without restraints) Performing minimization step: 4379. Total energy = 817.4531 kcal/mol (817.1056 without restraints) Performing minimization step: 4380. Total energy = 817.3121 kcal/mol (816.9644 without restraints) Performing minimization step: 4381. Total energy = 817.1710 kcal/mol (816.8233 without restraints) Performing minimization step: 4382. Total energy = 817.0298 kcal/mol (816.6820 without restraints) Performing minimization step: 4383. Total energy = 816.8884 kcal/mol (816.5407 without restraints) Performing minimization step: 4384. Total energy = 816.7471 kcal/mol (816.3993 without restraints) Performing minimization step: 4385. Total energy = 816.6057 kcal/mol (816.2577 without restraints) Performing minimization step: 4386. Total energy = 816.4641 kcal/mol (816.1162 without restraints) Performing minimization step: 4387. Total energy = 816.3225 kcal/mol (815.9745 without restraints) Performing minimization step: 4388. Total energy = 816.1810 kcal/mol (815.8330 without restraints) Performing minimization step: 4389. Total energy = 816.0392 kcal/mol (815.6910 without restraints) Performing minimization step: 4390. Total energy = 815.8972 kcal/mol (815.5491 without restraints) Performing minimization step: 4391. Total energy = 815.7552 kcal/mol (815.4070 without restraints) Performing minimization step: 4392. Total energy = 815.6131 kcal/mol (815.2648 without restraints) Performing minimization step: 4393. Total energy = 815.4711 kcal/mol (815.1228 without restraints) Performing minimization step: 4394. Total energy = 815.3289 kcal/mol (814.9805 without restraints) Performing minimization step: 4395. Total energy = 815.1865 kcal/mol (814.8381 without restraints) Performing minimization step: 4396. Total energy = 815.0441 kcal/mol (814.6956 without restraints) Performing minimization step: 4397. Total energy = 814.9016 kcal/mol (814.5531 without restraints) Performing minimization step: 4398. Total energy = 814.7586 kcal/mol (814.4100 without restraints) Performing minimization step: 4399. Total energy = 814.6160 kcal/mol (814.2674 without restraints) Performing minimization step: 4400. Total energy = 814.4733 kcal/mol (814.1246 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 814.3306 kcal/mol (813.9818 without restraints) Performing minimization step: 4402. Total energy = 814.1877 kcal/mol (813.8390 without restraints) Performing minimization step: 4403. Total energy = 814.0449 kcal/mol (813.6960 without restraints) Performing minimization step: 4404. Total energy = 813.9019 kcal/mol (813.5531 without restraints) Performing minimization step: 4405. Total energy = 813.7589 kcal/mol (813.4099 without restraints) Performing minimization step: 4406. Total energy = 813.6158 kcal/mol (813.2668 without restraints) Performing minimization step: 4407. Total energy = 813.4727 kcal/mol (813.1236 without restraints) Performing minimization step: 4408. Total energy = 813.3293 kcal/mol (812.9803 without restraints) Performing minimization step: 4409. Total energy = 813.1862 kcal/mol (812.8371 without restraints) Performing minimization step: 4410. Total energy = 813.0428 kcal/mol (812.6936 without restraints) Performing minimization step: 4411. Total energy = 812.8995 kcal/mol (812.5503 without restraints) Performing minimization step: 4412. Total energy = 812.7563 kcal/mol (812.4070 without restraints) Performing minimization step: 4413. Total energy = 812.6130 kcal/mol (812.2637 without restraints) Performing minimization step: 4414. Total energy = 812.4697 kcal/mol (812.1203 without restraints) Performing minimization step: 4415. Total energy = 812.3263 kcal/mol (811.9769 without restraints) Performing minimization step: 4416. Total energy = 812.1830 kcal/mol (811.8335 without restraints) Performing minimization step: 4417. Total energy = 812.0396 kcal/mol (811.6901 without restraints) Performing minimization step: 4418. Total energy = 811.8962 kcal/mol (811.5467 without restraints) Performing minimization step: 4419. Total energy = 811.7528 kcal/mol (811.4032 without restraints) Performing minimization step: 4420. Total energy = 811.6094 kcal/mol (811.2598 without restraints) Performing minimization step: 4421. Total energy = 811.4659 kcal/mol (811.1163 without restraints) Performing minimization step: 4422. Total energy = 811.3227 kcal/mol (810.9730 without restraints) Performing minimization step: 4423. Total energy = 811.1793 kcal/mol (810.8295 without restraints) Performing minimization step: 4424. Total energy = 811.0358 kcal/mol (810.6861 without restraints) Performing minimization step: 4425. Total energy = 810.8924 kcal/mol (810.5426 without restraints) Performing minimization step: 4426. Total energy = 810.7490 kcal/mol (810.3992 without restraints) Performing minimization step: 4427. Total energy = 810.6056 kcal/mol (810.2557 without restraints) Performing minimization step: 4428. Total energy = 810.4622 kcal/mol (810.1122 without restraints) Performing minimization step: 4429. Total energy = 810.3188 kcal/mol (809.9688 without restraints) Performing minimization step: 4430. Total energy = 810.1754 kcal/mol (809.8254 without restraints) Performing minimization step: 4431. Total energy = 810.0318 kcal/mol (809.6816 without restraints) Performing minimization step: 4432. Total energy = 809.8883 kcal/mol (809.5382 without restraints) Performing minimization step: 4433. Total energy = 809.7451 kcal/mol (809.3950 without restraints) Performing minimization step: 4434. Total energy = 809.6019 kcal/mol (809.2517 without restraints) Performing minimization step: 4435. Total energy = 809.4586 kcal/mol (809.1084 without restraints) Performing minimization step: 4436. Total energy = 809.3154 kcal/mol (808.9652 without restraints) Performing minimization step: 4437. Total energy = 809.1723 kcal/mol (808.8220 without restraints) Performing minimization step: 4438. Total energy = 809.0291 kcal/mol (808.6788 without restraints) Performing minimization step: 4439. Total energy = 808.8861 kcal/mol (808.5357 without restraints) Performing minimization step: 4440. Total energy = 808.7430 kcal/mol (808.3927 without restraints) Performing minimization step: 4441. Total energy = 808.6000 kcal/mol (808.2496 without restraints) Performing minimization step: 4442. Total energy = 808.4571 kcal/mol (808.1067 without restraints) Performing minimization step: 4443. Total energy = 808.3142 kcal/mol (807.9637 without restraints) Performing minimization step: 4444. Total energy = 808.1716 kcal/mol (807.8211 without restraints) Performing minimization step: 4445. Total energy = 808.0288 kcal/mol (807.6783 without restraints) Performing minimization step: 4446. Total energy = 807.8861 kcal/mol (807.5355 without restraints) Performing minimization step: 4447. Total energy = 807.7434 kcal/mol (807.3928 without restraints) Performing minimization step: 4448. Total energy = 807.6011 kcal/mol (807.2505 without restraints) Performing minimization step: 4449. Total energy = 807.4587 kcal/mol (807.1080 without restraints) Performing minimization step: 4450. Total energy = 807.3162 kcal/mol (806.9655 without restraints) Performing minimization step: 4451. Total energy = 807.1741 kcal/mol (806.8233 without restraints) Performing minimization step: 4452. Total energy = 807.0318 kcal/mol (806.6810 without restraints) Performing minimization step: 4453. Total energy = 806.8894 kcal/mol (806.5386 without restraints) Performing minimization step: 4454. Total energy = 806.7472 kcal/mol (806.3964 without restraints) Performing minimization step: 4455. Total energy = 806.6052 kcal/mol (806.2543 without restraints) Performing minimization step: 4456. Total energy = 806.4632 kcal/mol (806.1123 without restraints) Performing minimization step: 4457. Total energy = 806.3214 kcal/mol (805.9705 without restraints) Performing minimization step: 4458. Total energy = 806.1797 kcal/mol (805.8287 without restraints) Performing minimization step: 4459. Total energy = 806.0380 kcal/mol (805.6870 without restraints) Performing minimization step: 4460. Total energy = 805.8965 kcal/mol (805.5456 without restraints) Performing minimization step: 4461. Total energy = 805.7551 kcal/mol (805.4041 without restraints) Performing minimization step: 4462. Total energy = 805.6137 kcal/mol (805.2626 without restraints) Performing minimization step: 4463. Total energy = 805.4726 kcal/mol (805.1218 without restraints) Performing minimization step: 4464. Total energy = 805.3319 kcal/mol (804.9807 without restraints) Performing minimization step: 4465. Total energy = 805.1908 kcal/mol (804.8396 without restraints) Performing minimization step: 4466. Total energy = 805.0498 kcal/mol (804.6987 without restraints) Performing minimization step: 4467. Total energy = 804.9090 kcal/mol (804.5578 without restraints) Performing minimization step: 4468. Total energy = 804.7683 kcal/mol (804.4170 without restraints) Performing minimization step: 4469. Total energy = 804.6277 kcal/mol (804.2764 without restraints) Performing minimization step: 4470. Total energy = 804.4872 kcal/mol (804.1359 without restraints) Performing minimization step: 4471. Total energy = 804.3468 kcal/mol (803.9955 without restraints) Performing minimization step: 4472. Total energy = 804.2066 kcal/mol (803.8552 without restraints) Performing minimization step: 4473. Total energy = 804.0667 kcal/mol (803.7153 without restraints) Performing minimization step: 4474. Total energy = 803.9267 kcal/mol (803.5753 without restraints) Performing minimization step: 4475. Total energy = 803.7871 kcal/mol (803.4357 without restraints) Performing minimization step: 4476. Total energy = 803.6474 kcal/mol (803.2960 without restraints) Performing minimization step: 4477. Total energy = 803.5078 kcal/mol (803.1564 without restraints) Performing minimization step: 4478. Total energy = 803.3684 kcal/mol (803.0169 without restraints) Performing minimization step: 4479. Total energy = 803.2291 kcal/mol (802.8776 without restraints) Performing minimization step: 4480. Total energy = 803.0899 kcal/mol (802.7384 without restraints) Performing minimization step: 4481. Total energy = 802.9509 kcal/mol (802.5993 without restraints) Performing minimization step: 4482. Total energy = 802.8121 kcal/mol (802.4605 without restraints) Performing minimization step: 4483. Total energy = 802.6735 kcal/mol (802.3220 without restraints) Performing minimization step: 4484. Total energy = 802.5350 kcal/mol (802.1834 without restraints) Performing minimization step: 4485. Total energy = 802.3966 kcal/mol (802.0450 without restraints) Performing minimization step: 4486. Total energy = 802.2584 kcal/mol (801.9067 without restraints) Performing minimization step: 4487. Total energy = 802.1203 kcal/mol (801.7686 without restraints) Performing minimization step: 4488. Total energy = 801.9823 kcal/mol (801.6306 without restraints) Performing minimization step: 4489. Total energy = 801.8446 kcal/mol (801.4928 without restraints) Performing minimization step: 4490. Total energy = 801.7069 kcal/mol (801.3552 without restraints) Performing minimization step: 4491. Total energy = 801.5695 kcal/mol (801.2177 without restraints) Performing minimization step: 4492. Total energy = 801.4322 kcal/mol (801.0804 without restraints) Performing minimization step: 4493. Total energy = 801.2950 kcal/mol (800.9432 without restraints) Performing minimization step: 4494. Total energy = 801.1581 kcal/mol (800.8062 without restraints) Performing minimization step: 4495. Total energy = 801.0213 kcal/mol (800.6694 without restraints) Performing minimization step: 4496. Total energy = 800.8847 kcal/mol (800.5328 without restraints) Performing minimization step: 4497. Total energy = 800.7484 kcal/mol (800.3965 without restraints) Performing minimization step: 4498. Total energy = 800.6121 kcal/mol (800.2602 without restraints) Performing minimization step: 4499. Total energy = 800.4760 kcal/mol (800.1241 without restraints) Performing minimization step: 4500. Total energy = 800.3401 kcal/mol (799.9882 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 800.2044 kcal/mol (799.8524 without restraints) Performing minimization step: 4502. Total energy = 800.0688 kcal/mol (799.7168 without restraints) Performing minimization step: 4503. Total energy = 799.9335 kcal/mol (799.5815 without restraints) Performing minimization step: 4504. Total energy = 799.7984 kcal/mol (799.4463 without restraints) Performing minimization step: 4505. Total energy = 799.6634 kcal/mol (799.3113 without restraints) Performing minimization step: 4506. Total energy = 799.5286 kcal/mol (799.1765 without restraints) Performing minimization step: 4507. Total energy = 799.3939 kcal/mol (799.0418 without restraints) Performing minimization step: 4508. Total energy = 799.2595 kcal/mol (798.9074 without restraints) Performing minimization step: 4509. Total energy = 799.1252 kcal/mol (798.7731 without restraints) Performing minimization step: 4510. Total energy = 798.9911 kcal/mol (798.6390 without restraints) Performing minimization step: 4511. Total energy = 798.8573 kcal/mol (798.5051 without restraints) Performing minimization step: 4512. Total energy = 798.7234 kcal/mol (798.3712 without restraints) Performing minimization step: 4513. Total energy = 798.5902 kcal/mol (798.2382 without restraints) Performing minimization step: 4514. Total energy = 798.4571 kcal/mol (798.1049 without restraints) Performing minimization step: 4515. Total energy = 798.3241 kcal/mol (797.9718 without restraints) Performing minimization step: 4516. Total energy = 798.1911 kcal/mol (797.8389 without restraints) Performing minimization step: 4517. Total energy = 798.0585 kcal/mol (797.7063 without restraints) Performing minimization step: 4518. Total energy = 797.9261 kcal/mol (797.5738 without restraints) Performing minimization step: 4519. Total energy = 797.7940 kcal/mol (797.4417 without restraints) Performing minimization step: 4520. Total energy = 797.6620 kcal/mol (797.3096 without restraints) Performing minimization step: 4521. Total energy = 797.5301 kcal/mol (797.1778 without restraints) Performing minimization step: 4522. Total energy = 797.3987 kcal/mol (797.0463 without restraints) Performing minimization step: 4523. Total energy = 797.2672 kcal/mol (796.9149 without restraints) Performing minimization step: 4524. Total energy = 797.1360 kcal/mol (796.7836 without restraints) Performing minimization step: 4525. Total energy = 797.0050 kcal/mol (796.6526 without restraints) Performing minimization step: 4526. Total energy = 796.8742 kcal/mol (796.5218 without restraints) Performing minimization step: 4527. Total energy = 796.7436 kcal/mol (796.3911 without restraints) Performing minimization step: 4528. Total energy = 796.6132 kcal/mol (796.2608 without restraints) Performing minimization step: 4529. Total energy = 796.4828 kcal/mol (796.1304 without restraints) Performing minimization step: 4530. Total energy = 796.3531 kcal/mol (796.0006 without restraints) Performing minimization step: 4531. Total energy = 796.2237 kcal/mol (795.8712 without restraints) Performing minimization step: 4532. Total energy = 796.0942 kcal/mol (795.7417 without restraints) Performing minimization step: 4533. Total energy = 795.9648 kcal/mol (795.6123 without restraints) Performing minimization step: 4534. Total energy = 795.8359 kcal/mol (795.4834 without restraints) Performing minimization step: 4535. Total energy = 795.7070 kcal/mol (795.3545 without restraints) Performing minimization step: 4536. Total energy = 795.5783 kcal/mol (795.2258 without restraints) Performing minimization step: 4537. Total energy = 795.4499 kcal/mol (795.0973 without restraints) Performing minimization step: 4538. Total energy = 795.3217 kcal/mol (794.9690 without restraints) Performing minimization step: 4539. Total energy = 795.1936 kcal/mol (794.8410 without restraints) Performing minimization step: 4540. Total energy = 795.0658 kcal/mol (794.7132 without restraints) Performing minimization step: 4541. Total energy = 794.9382 kcal/mol (794.5856 without restraints) Performing minimization step: 4542. Total energy = 794.8112 kcal/mol (794.4585 without restraints) Performing minimization step: 4543. Total energy = 794.6840 kcal/mol (794.3313 without restraints) Performing minimization step: 4544. Total energy = 794.5571 kcal/mol (794.2044 without restraints) Performing minimization step: 4545. Total energy = 794.4303 kcal/mol (794.0776 without restraints) Performing minimization step: 4546. Total energy = 794.3038 kcal/mol (793.9511 without restraints) Performing minimization step: 4547. Total energy = 794.1776 kcal/mol (793.8248 without restraints) Performing minimization step: 4548. Total energy = 794.0515 kcal/mol (793.6987 without restraints) Performing minimization step: 4549. Total energy = 793.9254 kcal/mol (793.5726 without restraints) Performing minimization step: 4550. Total energy = 793.7998 kcal/mol (793.4470 without restraints) Performing minimization step: 4551. Total energy = 793.6744 kcal/mol (793.3216 without restraints) Performing minimization step: 4552. Total energy = 793.5492 kcal/mol (793.1964 without restraints) Performing minimization step: 4553. Total energy = 793.4243 kcal/mol (793.0714 without restraints) Performing minimization step: 4554. Total energy = 793.2995 kcal/mol (792.9467 without restraints) Performing minimization step: 4555. Total energy = 793.1750 kcal/mol (792.8221 without restraints) Performing minimization step: 4556. Total energy = 793.0507 kcal/mol (792.6978 without restraints) Performing minimization step: 4557. Total energy = 792.9266 kcal/mol (792.5737 without restraints) Performing minimization step: 4558. Total energy = 792.8028 kcal/mol (792.4498 without restraints) Performing minimization step: 4559. Total energy = 792.6791 kcal/mol (792.3262 without restraints) Performing minimization step: 4560. Total energy = 792.5557 kcal/mol (792.2028 without restraints) Performing minimization step: 4561. Total energy = 792.4325 kcal/mol (792.0795 without restraints) Performing minimization step: 4562. Total energy = 792.3096 kcal/mol (791.9566 without restraints) Performing minimization step: 4563. Total energy = 792.1868 kcal/mol (791.8338 without restraints) Performing minimization step: 4564. Total energy = 792.0645 kcal/mol (791.7115 without restraints) Performing minimization step: 4565. Total energy = 791.9422 kcal/mol (791.5891 without restraints) Performing minimization step: 4566. Total energy = 791.8199 kcal/mol (791.4668 without restraints) Performing minimization step: 4567. Total energy = 791.6980 kcal/mol (791.3449 without restraints) Performing minimization step: 4568. Total energy = 791.5760 kcal/mol (791.2229 without restraints) Performing minimization step: 4569. Total energy = 791.4545 kcal/mol (791.1014 without restraints) Performing minimization step: 4570. Total energy = 791.3333 kcal/mol (790.9802 without restraints) Performing minimization step: 4571. Total energy = 791.2123 kcal/mol (790.8592 without restraints) Performing minimization step: 4572. Total energy = 791.0916 kcal/mol (790.7384 without restraints) Performing minimization step: 4573. Total energy = 790.9712 kcal/mol (790.6180 without restraints) Performing minimization step: 4574. Total energy = 790.8509 kcal/mol (790.4977 without restraints) Performing minimization step: 4575. Total energy = 790.7306 kcal/mol (790.3773 without restraints) Performing minimization step: 4576. Total energy = 790.6106 kcal/mol (790.2574 without restraints) Performing minimization step: 4577. Total energy = 790.4909 kcal/mol (790.1377 without restraints) Performing minimization step: 4578. Total energy = 790.3716 kcal/mol (790.0184 without restraints) Performing minimization step: 4579. Total energy = 790.2524 kcal/mol (789.8991 without restraints) Performing minimization step: 4580. Total energy = 790.1336 kcal/mol (789.7803 without restraints) Performing minimization step: 4581. Total energy = 790.0148 kcal/mol (789.6615 without restraints) Performing minimization step: 4582. Total energy = 789.8962 kcal/mol (789.5428 without restraints) Performing minimization step: 4583. Total energy = 789.7778 kcal/mol (789.4244 without restraints) Performing minimization step: 4584. Total energy = 789.6596 kcal/mol (789.3063 without restraints) Performing minimization step: 4585. Total energy = 789.5414 kcal/mol (789.1880 without restraints) Performing minimization step: 4586. Total energy = 789.4232 kcal/mol (789.0698 without restraints) Performing minimization step: 4587. Total energy = 789.3057 kcal/mol (788.9523 without restraints) Performing minimization step: 4588. Total energy = 789.1885 kcal/mol (788.8351 without restraints) Performing minimization step: 4589. Total energy = 789.0714 kcal/mol (788.7180 without restraints) Performing minimization step: 4590. Total energy = 788.9545 kcal/mol (788.6010 without restraints) Performing minimization step: 4591. Total energy = 788.8379 kcal/mol (788.4844 without restraints) Performing minimization step: 4592. Total energy = 788.7214 kcal/mol (788.3679 without restraints) Performing minimization step: 4593. Total energy = 788.6051 kcal/mol (788.2516 without restraints) Performing minimization step: 4594. Total energy = 788.4890 kcal/mol (788.1354 without restraints) Performing minimization step: 4595. Total energy = 788.3731 kcal/mol (788.0195 without restraints) Performing minimization step: 4596. Total energy = 788.2575 kcal/mol (787.9038 without restraints) Performing minimization step: 4597. Total energy = 788.1420 kcal/mol (787.7884 without restraints) Performing minimization step: 4598. Total energy = 788.0268 kcal/mol (787.6733 without restraints) Performing minimization step: 4599. Total energy = 787.9119 kcal/mol (787.5582 without restraints) Performing minimization step: 4600. Total energy = 787.7968 kcal/mol (787.4432 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 787.6823 kcal/mol (787.3287 without restraints) Performing minimization step: 4602. Total energy = 787.5679 kcal/mol (787.2142 without restraints) Performing minimization step: 4603. Total energy = 787.4536 kcal/mol (787.0999 without restraints) Performing minimization step: 4604. Total energy = 787.3396 kcal/mol (786.9858 without restraints) Performing minimization step: 4605. Total energy = 787.2257 kcal/mol (786.8720 without restraints) Performing minimization step: 4606. Total energy = 787.1121 kcal/mol (786.7583 without restraints) Performing minimization step: 4607. Total energy = 786.9986 kcal/mol (786.6448 without restraints) Performing minimization step: 4608. Total energy = 786.8853 kcal/mol (786.5315 without restraints) Performing minimization step: 4609. Total energy = 786.7723 kcal/mol (786.4184 without restraints) Performing minimization step: 4610. Total energy = 786.6594 kcal/mol (786.3055 without restraints) Performing minimization step: 4611. Total energy = 786.5467 kcal/mol (786.1928 without restraints) Performing minimization step: 4612. Total energy = 786.4342 kcal/mol (786.0803 without restraints) Performing minimization step: 4613. Total energy = 786.3219 kcal/mol (785.9680 without restraints) Performing minimization step: 4614. Total energy = 786.2098 kcal/mol (785.8558 without restraints) Performing minimization step: 4615. Total energy = 786.0979 kcal/mol (785.7439 without restraints) Performing minimization step: 4616. Total energy = 785.9861 kcal/mol (785.6321 without restraints) Performing minimization step: 4617. Total energy = 785.8749 kcal/mol (785.5211 without restraints) Performing minimization step: 4618. Total energy = 785.7638 kcal/mol (785.4097 without restraints) Performing minimization step: 4619. Total energy = 785.6524 kcal/mol (785.2983 without restraints) Performing minimization step: 4620. Total energy = 785.5414 kcal/mol (785.1873 without restraints) Performing minimization step: 4621. Total energy = 785.4306 kcal/mol (785.0764 without restraints) Performing minimization step: 4622. Total energy = 785.3202 kcal/mol (784.9662 without restraints) Performing minimization step: 4623. Total energy = 785.2101 kcal/mol (784.8559 without restraints) Performing minimization step: 4624. Total energy = 785.0998 kcal/mol (784.7456 without restraints) Performing minimization step: 4625. Total energy = 784.9897 kcal/mol (784.6355 without restraints) Performing minimization step: 4626. Total energy = 784.8798 kcal/mol (784.5256 without restraints) Performing minimization step: 4627. Total energy = 784.7701 kcal/mol (784.4158 without restraints) Performing minimization step: 4628. Total energy = 784.6606 kcal/mol (784.3063 without restraints) Performing minimization step: 4629. Total energy = 784.5512 kcal/mol (784.1969 without restraints) Performing minimization step: 4630. Total energy = 784.4422 kcal/mol (784.0879 without restraints) Performing minimization step: 4631. Total energy = 784.3332 kcal/mol (783.9788 without restraints) Performing minimization step: 4632. Total energy = 784.2243 kcal/mol (783.8700 without restraints) Performing minimization step: 4633. Total energy = 784.1157 kcal/mol (783.7613 without restraints) Performing minimization step: 4634. Total energy = 784.0072 kcal/mol (783.6527 without restraints) Performing minimization step: 4635. Total energy = 783.8988 kcal/mol (783.5444 without restraints) Performing minimization step: 4636. Total energy = 783.7905 kcal/mol (783.4360 without restraints) Performing minimization step: 4637. Total energy = 783.6825 kcal/mol (783.3280 without restraints) Performing minimization step: 4638. Total energy = 783.5749 kcal/mol (783.2204 without restraints) Performing minimization step: 4639. Total energy = 783.4672 kcal/mol (783.1127 without restraints) Performing minimization step: 4640. Total energy = 783.3597 kcal/mol (783.0052 without restraints) Performing minimization step: 4641. Total energy = 783.2524 kcal/mol (782.8978 without restraints) Performing minimization step: 4642. Total energy = 783.1457 kcal/mol (782.7912 without restraints) Performing minimization step: 4643. Total energy = 783.0390 kcal/mol (782.6844 without restraints) Performing minimization step: 4644. Total energy = 782.9323 kcal/mol (782.5777 without restraints) Performing minimization step: 4645. Total energy = 782.8257 kcal/mol (782.4710 without restraints) Performing minimization step: 4646. Total energy = 782.7191 kcal/mol (782.3644 without restraints) Performing minimization step: 4647. Total energy = 782.6128 kcal/mol (782.2580 without restraints) Performing minimization step: 4648. Total energy = 782.5066 kcal/mol (782.1518 without restraints) Performing minimization step: 4649. Total energy = 782.4005 kcal/mol (782.0457 without restraints) Performing minimization step: 4650. Total energy = 782.2949 kcal/mol (781.9400 without restraints) Performing minimization step: 4651. Total energy = 782.1891 kcal/mol (781.8343 without restraints) Performing minimization step: 4652. Total energy = 782.0835 kcal/mol (781.7286 without restraints) Performing minimization step: 4653. Total energy = 781.9780 kcal/mol (781.6231 without restraints) Performing minimization step: 4654. Total energy = 781.8728 kcal/mol (781.5178 without restraints) Performing minimization step: 4655. Total energy = 781.7676 kcal/mol (781.4127 without restraints) Performing minimization step: 4656. Total energy = 781.6626 kcal/mol (781.3077 without restraints) Performing minimization step: 4657. Total energy = 781.5580 kcal/mol (781.2030 without restraints) Performing minimization step: 4658. Total energy = 781.4534 kcal/mol (781.0985 without restraints) Performing minimization step: 4659. Total energy = 781.3491 kcal/mol (780.9941 without restraints) Performing minimization step: 4660. Total energy = 781.2447 kcal/mol (780.8896 without restraints) Performing minimization step: 4661. Total energy = 781.1405 kcal/mol (780.7853 without restraints) Performing minimization step: 4662. Total energy = 781.0363 kcal/mol (780.6812 without restraints) Performing minimization step: 4663. Total energy = 780.9325 kcal/mol (780.5774 without restraints) Performing minimization step: 4664. Total energy = 780.8289 kcal/mol (780.4737 without restraints) Performing minimization step: 4665. Total energy = 780.7253 kcal/mol (780.3700 without restraints) Performing minimization step: 4666. Total energy = 780.6217 kcal/mol (780.2664 without restraints) Performing minimization step: 4667. Total energy = 780.5183 kcal/mol (780.1630 without restraints) Performing minimization step: 4668. Total energy = 780.4152 kcal/mol (780.0599 without restraints) Performing minimization step: 4669. Total energy = 780.3124 kcal/mol (779.9572 without restraints) Performing minimization step: 4670. Total energy = 780.2097 kcal/mol (779.8544 without restraints) Performing minimization step: 4671. Total energy = 780.1069 kcal/mol (779.7514 without restraints) Performing minimization step: 4672. Total energy = 780.0041 kcal/mol (779.6487 without restraints) Performing minimization step: 4673. Total energy = 779.9015 kcal/mol (779.5460 without restraints) Performing minimization step: 4674. Total energy = 779.7991 kcal/mol (779.4436 without restraints) Performing minimization step: 4675. Total energy = 779.6967 kcal/mol (779.3412 without restraints) Performing minimization step: 4676. Total energy = 779.5945 kcal/mol (779.2389 without restraints) Performing minimization step: 4677. Total energy = 779.4924 kcal/mol (779.1368 without restraints) Performing minimization step: 4678. Total energy = 779.3904 kcal/mol (779.0348 without restraints) Performing minimization step: 4679. Total energy = 779.2886 kcal/mol (778.9330 without restraints) Performing minimization step: 4680. Total energy = 779.1869 kcal/mol (778.8312 without restraints) Performing minimization step: 4681. Total energy = 779.0853 kcal/mol (778.7296 without restraints) Performing minimization step: 4682. Total energy = 778.9839 kcal/mol (778.6281 without restraints) Performing minimization step: 4683. Total energy = 778.8826 kcal/mol (778.5268 without restraints) Performing minimization step: 4684. Total energy = 778.7813 kcal/mol (778.4255 without restraints) Performing minimization step: 4685. Total energy = 778.6802 kcal/mol (778.3244 without restraints) Performing minimization step: 4686. Total energy = 778.5793 kcal/mol (778.2234 without restraints) Performing minimization step: 4687. Total energy = 778.4790 kcal/mol (778.1230 without restraints) Performing minimization step: 4688. Total energy = 778.3781 kcal/mol (778.0222 without restraints) Performing minimization step: 4689. Total energy = 778.2775 kcal/mol (777.9216 without restraints) Performing minimization step: 4690. Total energy = 778.1772 kcal/mol (777.8212 without restraints) Performing minimization step: 4691. Total energy = 778.0769 kcal/mol (777.7209 without restraints) Performing minimization step: 4692. Total energy = 777.9766 kcal/mol (777.6206 without restraints) Performing minimization step: 4693. Total energy = 777.8765 kcal/mol (777.5204 without restraints) Performing minimization step: 4694. Total energy = 777.7765 kcal/mol (777.4204 without restraints) Performing minimization step: 4695. Total energy = 777.6764 kcal/mol (777.3202 without restraints) Performing minimization step: 4696. Total energy = 777.5766 kcal/mol (777.2204 without restraints) Performing minimization step: 4697. Total energy = 777.4769 kcal/mol (777.1207 without restraints) Performing minimization step: 4698. Total energy = 777.3773 kcal/mol (777.0211 without restraints) Performing minimization step: 4699. Total energy = 777.2779 kcal/mol (776.9216 without restraints) Performing minimization step: 4700. Total energy = 777.1785 kcal/mol (776.8222 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 777.0797 kcal/mol (776.7234 without restraints) Performing minimization step: 4702. Total energy = 776.9806 kcal/mol (776.6242 without restraints) Performing minimization step: 4703. Total energy = 776.8816 kcal/mol (776.5252 without restraints) Performing minimization step: 4704. Total energy = 776.7826 kcal/mol (776.4262 without restraints) Performing minimization step: 4705. Total energy = 776.6840 kcal/mol (776.3276 without restraints) Performing minimization step: 4706. Total energy = 776.5854 kcal/mol (776.2289 without restraints) Performing minimization step: 4707. Total energy = 776.4868 kcal/mol (776.1302 without restraints) Performing minimization step: 4708. Total energy = 776.3883 kcal/mol (776.0317 without restraints) Performing minimization step: 4709. Total energy = 776.2899 kcal/mol (775.9333 without restraints) Performing minimization step: 4710. Total energy = 776.1916 kcal/mol (775.8350 without restraints) Performing minimization step: 4711. Total energy = 776.0936 kcal/mol (775.7369 without restraints) Performing minimization step: 4712. Total energy = 775.9956 kcal/mol (775.6390 without restraints) Performing minimization step: 4713. Total energy = 775.8976 kcal/mol (775.5409 without restraints) Performing minimization step: 4714. Total energy = 775.7997 kcal/mol (775.4430 without restraints) Performing minimization step: 4715. Total energy = 775.7020 kcal/mol (775.3452 without restraints) Performing minimization step: 4716. Total energy = 775.6044 kcal/mol (775.2476 without restraints) Performing minimization step: 4717. Total energy = 775.5070 kcal/mol (775.1502 without restraints) Performing minimization step: 4718. Total energy = 775.4096 kcal/mol (775.0527 without restraints) Performing minimization step: 4719. Total energy = 775.3122 kcal/mol (774.9552 without restraints) Performing minimization step: 4720. Total energy = 775.2148 kcal/mol (774.8579 without restraints) Performing minimization step: 4721. Total energy = 775.1176 kcal/mol (774.7606 without restraints) Performing minimization step: 4722. Total energy = 775.0209 kcal/mol (774.6639 without restraints) Performing minimization step: 4723. Total energy = 774.9239 kcal/mol (774.5669 without restraints) Performing minimization step: 4724. Total energy = 774.8270 kcal/mol (774.4699 without restraints) Performing minimization step: 4725. Total energy = 774.7301 kcal/mol (774.3730 without restraints) Performing minimization step: 4726. Total energy = 774.6334 kcal/mol (774.2763 without restraints) Performing minimization step: 4727. Total energy = 774.5367 kcal/mol (774.1796 without restraints) Performing minimization step: 4728. Total energy = 774.4402 kcal/mol (774.0830 without restraints) Performing minimization step: 4729. Total energy = 774.3437 kcal/mol (773.9865 without restraints) Performing minimization step: 4730. Total energy = 774.2474 kcal/mol (773.8901 without restraints) Performing minimization step: 4731. Total energy = 774.1511 kcal/mol (773.7938 without restraints) Performing minimization step: 4732. Total energy = 774.0549 kcal/mol (773.6975 without restraints) Performing minimization step: 4733. Total energy = 773.9588 kcal/mol (773.6014 without restraints) Performing minimization step: 4734. Total energy = 773.8627 kcal/mol (773.5053 without restraints) Performing minimization step: 4735. Total energy = 773.7668 kcal/mol (773.4094 without restraints) Performing minimization step: 4736. Total energy = 773.6710 kcal/mol (773.3135 without restraints) Performing minimization step: 4737. Total energy = 773.5752 kcal/mol (773.2177 without restraints) Performing minimization step: 4738. Total energy = 773.4797 kcal/mol (773.1222 without restraints) Performing minimization step: 4739. Total energy = 773.3841 kcal/mol (773.0266 without restraints) Performing minimization step: 4740. Total energy = 773.2887 kcal/mol (772.9311 without restraints) Performing minimization step: 4741. Total energy = 773.1932 kcal/mol (772.8356 without restraints) Performing minimization step: 4742. Total energy = 773.0979 kcal/mol (772.7403 without restraints) Performing minimization step: 4743. Total energy = 773.0024 kcal/mol (772.6447 without restraints) Performing minimization step: 4744. Total energy = 772.9072 kcal/mol (772.5495 without restraints) Performing minimization step: 4745. Total energy = 772.8122 kcal/mol (772.4544 without restraints) Performing minimization step: 4746. Total energy = 772.7172 kcal/mol (772.3594 without restraints) Performing minimization step: 4747. Total energy = 772.6223 kcal/mol (772.2644 without restraints) Performing minimization step: 4748. Total energy = 772.5274 kcal/mol (772.1695 without restraints) Performing minimization step: 4749. Total energy = 772.4333 kcal/mol (772.0759 without restraints) Performing minimization step: 4750. Total energy = 772.3389 kcal/mol (771.9810 without restraints) Performing minimization step: 4751. Total energy = 772.2443 kcal/mol (771.8864 without restraints) Performing minimization step: 4752. Total energy = 772.1498 kcal/mol (771.7918 without restraints) Performing minimization step: 4753. Total energy = 772.0554 kcal/mol (771.6974 without restraints) Performing minimization step: 4754. Total energy = 771.9610 kcal/mol (771.6030 without restraints) Performing minimization step: 4755. Total energy = 771.8668 kcal/mol (771.5087 without restraints) Performing minimization step: 4756. Total energy = 771.7726 kcal/mol (771.4144 without restraints) Performing minimization step: 4757. Total energy = 771.6787 kcal/mol (771.3205 without restraints) Performing minimization step: 4758. Total energy = 771.5846 kcal/mol (771.2264 without restraints) Performing minimization step: 4759. Total energy = 771.4907 kcal/mol (771.1324 without restraints) Performing minimization step: 4760. Total energy = 771.3972 kcal/mol (771.0389 without restraints) Performing minimization step: 4761. Total energy = 771.3034 kcal/mol (770.9451 without restraints) Performing minimization step: 4762. Total energy = 771.2096 kcal/mol (770.8513 without restraints) Performing minimization step: 4763. Total energy = 771.1162 kcal/mol (770.7578 without restraints) Performing minimization step: 4764. Total energy = 771.0226 kcal/mol (770.6642 without restraints) Performing minimization step: 4765. Total energy = 770.9291 kcal/mol (770.5706 without restraints) Performing minimization step: 4766. Total energy = 770.8356 kcal/mol (770.4771 without restraints) Performing minimization step: 4767. Total energy = 770.7422 kcal/mol (770.3837 without restraints) Performing minimization step: 4768. Total energy = 770.6490 kcal/mol (770.2904 without restraints) Performing minimization step: 4769. Total energy = 770.5560 kcal/mol (770.1974 without restraints) Performing minimization step: 4770. Total energy = 770.4628 kcal/mol (770.1042 without restraints) Performing minimization step: 4771. Total energy = 770.3698 kcal/mol (770.0111 without restraints) Performing minimization step: 4772. Total energy = 770.2768 kcal/mol (769.9181 without restraints) Performing minimization step: 4773. Total energy = 770.1839 kcal/mol (769.8251 without restraints) Performing minimization step: 4774. Total energy = 770.0908 kcal/mol (769.7320 without restraints) Performing minimization step: 4775. Total energy = 769.9980 kcal/mol (769.6392 without restraints) Performing minimization step: 4776. Total energy = 769.9053 kcal/mol (769.5465 without restraints) Performing minimization step: 4777. Total energy = 769.8128 kcal/mol (769.4540 without restraints) Performing minimization step: 4778. Total energy = 769.7203 kcal/mol (769.3614 without restraints) Performing minimization step: 4779. Total energy = 769.6280 kcal/mol (769.2691 without restraints) Performing minimization step: 4780. Total energy = 769.5355 kcal/mol (769.1766 without restraints) Performing minimization step: 4781. Total energy = 769.4432 kcal/mol (769.0842 without restraints) Performing minimization step: 4782. Total energy = 769.3511 kcal/mol (768.9920 without restraints) Performing minimization step: 4783. Total energy = 769.2588 kcal/mol (768.8998 without restraints) Performing minimization step: 4784. Total energy = 769.1667 kcal/mol (768.8076 without restraints) Performing minimization step: 4785. Total energy = 769.0746 kcal/mol (768.7155 without restraints) Performing minimization step: 4786. Total energy = 768.9826 kcal/mol (768.6234 without restraints) Performing minimization step: 4787. Total energy = 768.8906 kcal/mol (768.5314 without restraints) Performing minimization step: 4788. Total energy = 768.7988 kcal/mol (768.4395 without restraints) Performing minimization step: 4789. Total energy = 768.7069 kcal/mol (768.3477 without restraints) Performing minimization step: 4790. Total energy = 768.6154 kcal/mol (768.2561 without restraints) Performing minimization step: 4791. Total energy = 768.5237 kcal/mol (768.1644 without restraints) Performing minimization step: 4792. Total energy = 768.4321 kcal/mol (768.0728 without restraints) Performing minimization step: 4793. Total energy = 768.3406 kcal/mol (767.9812 without restraints) Performing minimization step: 4794. Total energy = 768.2491 kcal/mol (767.8897 without restraints) Performing minimization step: 4795. Total energy = 768.1576 kcal/mol (767.7983 without restraints) Performing minimization step: 4796. Total energy = 768.0664 kcal/mol (767.7069 without restraints) Performing minimization step: 4797. Total energy = 767.9751 kcal/mol (767.6156 without restraints) Performing minimization step: 4798. Total energy = 767.8839 kcal/mol (767.5243 without restraints) Performing minimization step: 4799. Total energy = 767.7928 kcal/mol (767.4332 without restraints) Performing minimization step: 4800. Total energy = 767.7017 kcal/mol (767.3421 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 767.6107 kcal/mol (767.2510 without restraints) Performing minimization step: 4802. Total energy = 767.5197 kcal/mol (767.1600 without restraints) Performing minimization step: 4803. Total energy = 767.4290 kcal/mol (767.0693 without restraints) Performing minimization step: 4804. Total energy = 767.3380 kcal/mol (766.9782 without restraints) Performing minimization step: 4805. Total energy = 767.2472 kcal/mol (766.8874 without restraints) Performing minimization step: 4806. Total energy = 767.1565 kcal/mol (766.7967 without restraints) Performing minimization step: 4807. Total energy = 767.0659 kcal/mol (766.7060 without restraints) Performing minimization step: 4808. Total energy = 766.9754 kcal/mol (766.6156 without restraints) Performing minimization step: 4809. Total energy = 766.8852 kcal/mol (766.5253 without restraints) Performing minimization step: 4810. Total energy = 766.7949 kcal/mol (766.4350 without restraints) Performing minimization step: 4811. Total energy = 766.7046 kcal/mol (766.3446 without restraints) Performing minimization step: 4812. Total energy = 766.6143 kcal/mol (766.2543 without restraints) Performing minimization step: 4813. Total energy = 766.5241 kcal/mol (766.1640 without restraints) Performing minimization step: 4814. Total energy = 766.4339 kcal/mol (766.0738 without restraints) Performing minimization step: 4815. Total energy = 766.3434 kcal/mol (765.9831 without restraints) Performing minimization step: 4816. Total energy = 766.2532 kcal/mol (765.8930 without restraints) Performing minimization step: 4817. Total energy = 766.1631 kcal/mol (765.8028 without restraints) Performing minimization step: 4818. Total energy = 766.0731 kcal/mol (765.7129 without restraints) Performing minimization step: 4819. Total energy = 765.9832 kcal/mol (765.6229 without restraints) Performing minimization step: 4820. Total energy = 765.8936 kcal/mol (765.5333 without restraints) Performing minimization step: 4821. Total energy = 765.8039 kcal/mol (765.4435 without restraints) Performing minimization step: 4822. Total energy = 765.7142 kcal/mol (765.3538 without restraints) Performing minimization step: 4823. Total energy = 765.6245 kcal/mol (765.2641 without restraints) Performing minimization step: 4824. Total energy = 765.5349 kcal/mol (765.1745 without restraints) Performing minimization step: 4825. Total energy = 765.4458 kcal/mol (765.0853 without restraints) Performing minimization step: 4826. Total energy = 765.3564 kcal/mol (764.9959 without restraints) Performing minimization step: 4827. Total energy = 765.2670 kcal/mol (764.9064 without restraints) Performing minimization step: 4828. Total energy = 765.1776 kcal/mol (764.8171 without restraints) Performing minimization step: 4829. Total energy = 765.0884 kcal/mol (764.7278 without restraints) Performing minimization step: 4830. Total energy = 764.9993 kcal/mol (764.6387 without restraints) Performing minimization step: 4831. Total energy = 764.9102 kcal/mol (764.5495 without restraints) Performing minimization step: 4832. Total energy = 764.8214 kcal/mol (764.4607 without restraints) Performing minimization step: 4833. Total energy = 764.7324 kcal/mol (764.3718 without restraints) Performing minimization step: 4834. Total energy = 764.6435 kcal/mol (764.2828 without restraints) Performing minimization step: 4835. Total energy = 764.5546 kcal/mol (764.1938 without restraints) Performing minimization step: 4836. Total energy = 764.4660 kcal/mol (764.1052 without restraints) Performing minimization step: 4837. Total energy = 764.3772 kcal/mol (764.0164 without restraints) Performing minimization step: 4838. Total energy = 764.2885 kcal/mol (763.9276 without restraints) Performing minimization step: 4839. Total energy = 764.1998 kcal/mol (763.8389 without restraints) Performing minimization step: 4840. Total energy = 764.1114 kcal/mol (763.7504 without restraints) Performing minimization step: 4841. Total energy = 764.0228 kcal/mol (763.6618 without restraints) Performing minimization step: 4842. Total energy = 763.9343 kcal/mol (763.5733 without restraints) Performing minimization step: 4843. Total energy = 763.8459 kcal/mol (763.4849 without restraints) Performing minimization step: 4844. Total energy = 763.7575 kcal/mol (763.3964 without restraints) Performing minimization step: 4845. Total energy = 763.6692 kcal/mol (763.3081 without restraints) Performing minimization step: 4846. Total energy = 763.5810 kcal/mol (763.2198 without restraints) Performing minimization step: 4847. Total energy = 763.4928 kcal/mol (763.1316 without restraints) Performing minimization step: 4848. Total energy = 763.4046 kcal/mol (763.0434 without restraints) Performing minimization step: 4849. Total energy = 763.3166 kcal/mol (762.9553 without restraints) Performing minimization step: 4850. Total energy = 763.2286 kcal/mol (762.8673 without restraints) Performing minimization step: 4851. Total energy = 763.1406 kcal/mol (762.7793 without restraints) Performing minimization step: 4852. Total energy = 763.0527 kcal/mol (762.6913 without restraints) Performing minimization step: 4853. Total energy = 762.9648 kcal/mol (762.6034 without restraints) Performing minimization step: 4854. Total energy = 762.8770 kcal/mol (762.5156 without restraints) Performing minimization step: 4855. Total energy = 762.7893 kcal/mol (762.4278 without restraints) Performing minimization step: 4856. Total energy = 762.7016 kcal/mol (762.3401 without restraints) Performing minimization step: 4857. Total energy = 762.6140 kcal/mol (762.2525 without restraints) Performing minimization step: 4858. Total energy = 762.5264 kcal/mol (762.1649 without restraints) Performing minimization step: 4859. Total energy = 762.4390 kcal/mol (762.0775 without restraints) Performing minimization step: 4860. Total energy = 762.3519 kcal/mol (761.9903 without restraints) Performing minimization step: 4861. Total energy = 762.2645 kcal/mol (761.9029 without restraints) Performing minimization step: 4862. Total energy = 762.1770 kcal/mol (761.8153 without restraints) Performing minimization step: 4863. Total energy = 762.0897 kcal/mol (761.7280 without restraints) Performing minimization step: 4864. Total energy = 762.0024 kcal/mol (761.6407 without restraints) Performing minimization step: 4865. Total energy = 761.9153 kcal/mol (761.5535 without restraints) Performing minimization step: 4866. Total energy = 761.8281 kcal/mol (761.4663 without restraints) Performing minimization step: 4867. Total energy = 761.7411 kcal/mol (761.3793 without restraints) Performing minimization step: 4868. Total energy = 761.6541 kcal/mol (761.2923 without restraints) Performing minimization step: 4869. Total energy = 761.5672 kcal/mol (761.2053 without restraints) Performing minimization step: 4870. Total energy = 761.4803 kcal/mol (761.1184 without restraints) Performing minimization step: 4871. Total energy = 761.3935 kcal/mol (761.0316 without restraints) Performing minimization step: 4872. Total energy = 761.3067 kcal/mol (760.9447 without restraints) Performing minimization step: 4873. Total energy = 761.2200 kcal/mol (760.8580 without restraints) Performing minimization step: 4874. Total energy = 761.1335 kcal/mol (760.7715 without restraints) Performing minimization step: 4875. Total energy = 761.0469 kcal/mol (760.6849 without restraints) Performing minimization step: 4876. Total energy = 760.9604 kcal/mol (760.5983 without restraints) Performing minimization step: 4877. Total energy = 760.8739 kcal/mol (760.5118 without restraints) Performing minimization step: 4878. Total energy = 760.7875 kcal/mol (760.4253 without restraints) Performing minimization step: 4879. Total energy = 760.7013 kcal/mol (760.3390 without restraints) Performing minimization step: 4880. Total energy = 760.6149 kcal/mol (760.2527 without restraints) Performing minimization step: 4881. Total energy = 760.5286 kcal/mol (760.1664 without restraints) Performing minimization step: 4882. Total energy = 760.4424 kcal/mol (760.0801 without restraints) Performing minimization step: 4883. Total energy = 760.3563 kcal/mol (759.9939 without restraints) Performing minimization step: 4884. Total energy = 760.2704 kcal/mol (759.9080 without restraints) Performing minimization step: 4885. Total energy = 760.1843 kcal/mol (759.8219 without restraints) Performing minimization step: 4886. Total energy = 760.0983 kcal/mol (759.7358 without restraints) Performing minimization step: 4887. Total energy = 760.0124 kcal/mol (759.6501 without restraints) Performing minimization step: 4888. Total energy = 759.9266 kcal/mol (759.5641 without restraints) Performing minimization step: 4889. Total energy = 759.8408 kcal/mol (759.4783 without restraints) Performing minimization step: 4890. Total energy = 759.7553 kcal/mol (759.3927 without restraints) Performing minimization step: 4891. Total energy = 759.6694 kcal/mol (759.3067 without restraints) Performing minimization step: 4892. Total energy = 759.5839 kcal/mol (759.2212 without restraints) Performing minimization step: 4893. Total energy = 759.4982 kcal/mol (759.1356 without restraints) Performing minimization step: 4894. Total energy = 759.4129 kcal/mol (759.0502 without restraints) Performing minimization step: 4895. Total energy = 759.3276 kcal/mol (758.9649 without restraints) Performing minimization step: 4896. Total energy = 759.2422 kcal/mol (758.8794 without restraints) Performing minimization step: 4897. Total energy = 759.1568 kcal/mol (758.7940 without restraints) Performing minimization step: 4898. Total energy = 759.0715 kcal/mol (758.7087 without restraints) Performing minimization step: 4899. Total energy = 758.9862 kcal/mol (758.6233 without restraints) Performing minimization step: 4900. Total energy = 758.9011 kcal/mol (758.5383 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 758.8159 kcal/mol (758.4531 without restraints) Performing minimization step: 4902. Total energy = 758.7309 kcal/mol (758.3680 without restraints) Performing minimization step: 4903. Total energy = 758.6458 kcal/mol (758.2829 without restraints) Performing minimization step: 4904. Total energy = 758.5608 kcal/mol (758.1978 without restraints) Performing minimization step: 4905. Total energy = 758.4758 kcal/mol (758.1128 without restraints) Performing minimization step: 4906. Total energy = 758.3909 kcal/mol (758.0279 without restraints) Performing minimization step: 4907. Total energy = 758.3060 kcal/mol (757.9430 without restraints) Performing minimization step: 4908. Total energy = 758.2214 kcal/mol (757.8584 without restraints) Performing minimization step: 4909. Total energy = 758.1367 kcal/mol (757.7736 without restraints) Performing minimization step: 4910. Total energy = 758.0520 kcal/mol (757.6889 without restraints) Performing minimization step: 4911. Total energy = 757.9672 kcal/mol (757.6040 without restraints) Performing minimization step: 4912. Total energy = 757.8826 kcal/mol (757.5194 without restraints) Performing minimization step: 4913. Total energy = 757.7983 kcal/mol (757.4350 without restraints) Performing minimization step: 4914. Total energy = 757.7138 kcal/mol (757.3505 without restraints) Performing minimization step: 4915. Total energy = 757.6293 kcal/mol (757.2660 without restraints) Performing minimization step: 4916. Total energy = 757.5452 kcal/mol (757.1819 without restraints) Performing minimization step: 4917. Total energy = 757.4609 kcal/mol (757.0975 without restraints) Performing minimization step: 4918. Total energy = 757.3768 kcal/mol (757.0134 without restraints) Performing minimization step: 4919. Total energy = 757.2925 kcal/mol (756.9291 without restraints) Performing minimization step: 4920. Total energy = 757.2084 kcal/mol (756.8449 without restraints) Performing minimization step: 4921. Total energy = 757.1242 kcal/mol (756.7608 without restraints) Performing minimization step: 4922. Total energy = 757.0402 kcal/mol (756.6767 without restraints) Performing minimization step: 4923. Total energy = 756.9564 kcal/mol (756.5931 without restraints) Performing minimization step: 4924. Total energy = 756.8726 kcal/mol (756.5091 without restraints) Performing minimization step: 4925. Total energy = 756.7887 kcal/mol (756.4252 without restraints) Performing minimization step: 4926. Total energy = 756.7051 kcal/mol (756.3415 without restraints) Performing minimization step: 4927. Total energy = 756.6213 kcal/mol (756.2576 without restraints) Performing minimization step: 4928. Total energy = 756.5376 kcal/mol (756.1741 without restraints) Performing minimization step: 4929. Total energy = 756.4541 kcal/mol (756.0904 without restraints) Performing minimization step: 4930. Total energy = 756.3708 kcal/mol (756.0071 without restraints) Performing minimization step: 4931. Total energy = 756.2873 kcal/mol (755.9235 without restraints) Performing minimization step: 4932. Total energy = 756.2037 kcal/mol (755.8399 without restraints) Performing minimization step: 4933. Total energy = 756.1203 kcal/mol (755.7564 without restraints) Performing minimization step: 4934. Total energy = 756.0368 kcal/mol (755.6730 without restraints) Performing minimization step: 4935. Total energy = 755.9535 kcal/mol (755.5896 without restraints) Performing minimization step: 4936. Total energy = 755.8702 kcal/mol (755.5063 without restraints) Performing minimization step: 4937. Total energy = 755.7869 kcal/mol (755.4230 without restraints) Performing minimization step: 4938. Total energy = 755.7039 kcal/mol (755.3400 without restraints) Performing minimization step: 4939. Total energy = 755.6208 kcal/mol (755.2569 without restraints) Performing minimization step: 4940. Total energy = 755.5379 kcal/mol (755.1739 without restraints) Performing minimization step: 4941. Total energy = 755.4548 kcal/mol (755.0908 without restraints) Performing minimization step: 4942. Total energy = 755.3716 kcal/mol (755.0076 without restraints) Performing minimization step: 4943. Total energy = 755.2887 kcal/mol (754.9246 without restraints) Performing minimization step: 4944. Total energy = 755.2058 kcal/mol (754.8417 without restraints) Performing minimization step: 4945. Total energy = 755.1230 kcal/mol (754.7589 without restraints) Performing minimization step: 4946. Total energy = 755.0402 kcal/mol (754.6760 without restraints) Performing minimization step: 4947. Total energy = 754.9575 kcal/mol (754.5933 without restraints) Performing minimization step: 4948. Total energy = 754.8748 kcal/mol (754.5106 without restraints) Performing minimization step: 4949. Total energy = 754.7922 kcal/mol (754.4279 without restraints) Performing minimization step: 4950. Total energy = 754.7098 kcal/mol (754.3455 without restraints) Performing minimization step: 4951. Total energy = 754.6273 kcal/mol (754.2631 without restraints) Performing minimization step: 4952. Total energy = 754.5449 kcal/mol (754.1806 without restraints) Performing minimization step: 4953. Total energy = 754.4625 kcal/mol (754.0981 without restraints) Performing minimization step: 4954. Total energy = 754.3801 kcal/mol (754.0157 without restraints) Performing minimization step: 4955. Total energy = 754.2978 kcal/mol (753.9334 without restraints) Performing minimization step: 4956. Total energy = 754.2155 kcal/mol (753.8511 without restraints) Performing minimization step: 4957. Total energy = 754.1335 kcal/mol (753.7691 without restraints) Performing minimization step: 4958. Total energy = 754.0516 kcal/mol (753.6871 without restraints) Performing minimization step: 4959. Total energy = 753.9695 kcal/mol (753.6049 without restraints) Performing minimization step: 4960. Total energy = 753.8876 kcal/mol (753.5230 without restraints) Performing minimization step: 4961. Total energy = 753.8056 kcal/mol (753.4410 without restraints) Performing minimization step: 4962. Total energy = 753.7236 kcal/mol (753.3590 without restraints) Performing minimization step: 4963. Total energy = 753.6417 kcal/mol (753.2771 without restraints) Performing minimization step: 4964. Total energy = 753.5597 kcal/mol (753.1950 without restraints) Performing minimization step: 4965. Total energy = 753.4779 kcal/mol (753.1132 without restraints) Performing minimization step: 4966. Total energy = 753.3961 kcal/mol (753.0314 without restraints) Performing minimization step: 4967. Total energy = 753.3144 kcal/mol (752.9497 without restraints) Performing minimization step: 4968. Total energy = 753.2328 kcal/mol (752.8680 without restraints) Performing minimization step: 4969. Total energy = 753.1512 kcal/mol (752.7864 without restraints) Performing minimization step: 4970. Total energy = 753.0697 kcal/mol (752.7048 without restraints) Performing minimization step: 4971. Total energy = 752.9881 kcal/mol (752.6233 without restraints) Performing minimization step: 4972. Total energy = 752.9069 kcal/mol (752.5420 without restraints) Performing minimization step: 4973. Total energy = 752.8255 kcal/mol (752.4606 without restraints) Performing minimization step: 4974. Total energy = 752.7441 kcal/mol (752.3790 without restraints) Performing minimization step: 4975. Total energy = 752.6627 kcal/mol (752.2977 without restraints) Performing minimization step: 4976. Total energy = 752.5814 kcal/mol (752.2164 without restraints) Performing minimization step: 4977. Total energy = 752.5002 kcal/mol (752.1352 without restraints) Performing minimization step: 4978. Total energy = 752.4191 kcal/mol (752.0541 without restraints) Performing minimization step: 4979. Total energy = 752.3382 kcal/mol (751.9731 without restraints) Performing minimization step: 4980. Total energy = 752.2572 kcal/mol (751.8921 without restraints) Performing minimization step: 4981. Total energy = 752.1762 kcal/mol (751.8111 without restraints) Performing minimization step: 4982. Total energy = 752.0955 kcal/mol (751.7304 without restraints) Performing minimization step: 4983. Total energy = 752.0148 kcal/mol (751.6496 without restraints) Performing minimization step: 4984. Total energy = 751.9340 kcal/mol (751.5688 without restraints) Performing minimization step: 4985. Total energy = 751.8532 kcal/mol (751.4880 without restraints) Performing minimization step: 4986. Total energy = 751.7725 kcal/mol (751.4073 without restraints) Performing minimization step: 4987. Total energy = 751.6918 kcal/mol (751.3265 without restraints) Performing minimization step: 4988. Total energy = 751.6110 kcal/mol (751.2457 without restraints) Performing minimization step: 4989. Total energy = 751.5304 kcal/mol (751.1651 without restraints) Performing minimization step: 4990. Total energy = 751.4499 kcal/mol (751.0845 without restraints) Performing minimization step: 4991. Total energy = 751.3694 kcal/mol (751.0040 without restraints) Performing minimization step: 4992. Total energy = 751.2890 kcal/mol (750.9236 without restraints) Performing minimization step: 4993. Total energy = 751.2086 kcal/mol (750.8431 without restraints) Performing minimization step: 4994. Total energy = 751.1280 kcal/mol (750.7626 without restraints) Performing minimization step: 4995. Total energy = 751.0478 kcal/mol (750.6823 without restraints) Performing minimization step: 4996. Total energy = 750.9676 kcal/mol (750.6022 without restraints) Performing minimization step: 4997. Total energy = 750.8875 kcal/mol (750.5220 without restraints) Performing minimization step: 4998. Total energy = 750.8074 kcal/mol (750.4419 without restraints) Performing minimization step: 4999. Total energy = 750.7273 kcal/mol (750.3617 without restraints) Performing minimization step: 5000. Total energy = 750.6475 kcal/mol (750.2819 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/8b3f2b4f/tmp/um_refx/um_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to um_refx.pdb DONE!