==> 3_seq_alpha_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Fri Jan 16 23:19:57 2026
ATOM      1  P     A A   1      17.142  -8.500  20.152  1.00  0.00           P  
ATOM      2  OP1   A A   1      16.287  -8.254  21.346  1.00  0.00           O  
ATOM      3  OP2   A A   1      17.220  -9.872  19.630  1.00  0.00           O  
ATOM      4  O5'   A A   1      16.664  -7.582  18.929  1.00  0.00           O  
ATOM      5  C5'   A A   1      16.363  -6.240  19.142  1.00  0.00           C  
ATOM      6  C4'   A A   1      16.327  -5.515  17.844  1.00  0.00           C  

==> 3_seq_rnafoldpdb_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Fri Jan 16 23:19:58 2026
REMARK 250 Fixed atoms/residues:
REMARK 250  - add OP3 at the beginning of the chain  in chain: A <Residue A het=  resseq=1 icode= > residue # 1
ATOM      1  P     A A   1       0.388   0.029  -2.112  1.00 11.89           P  
ATOM      2  OP1   A A   1       1.309  -0.884  -2.831  1.00 14.35           O  
ATOM      3  OP2   A A   1      -1.065  -0.049  -2.332  1.00 12.68           O  
ATOM      4  O5'   A A   1       0.600  -0.077  -0.541  1.00 10.34           O  

==> sek_3_consensus_trroset_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Fri Jan 16 23:19:59 2026
ATOM      1  P     A A   1     -78.425 -53.672 -76.219  1.00 36.50           P  
ATOM      2  OP1   A A   1     -78.963 -52.536 -75.424  1.00 36.50           O  
ATOM      3  OP2   A A   1     -77.177 -53.492 -77.009  1.00 36.50           O  
ATOM      4  O5'   A A   1     -78.259 -54.948 -75.270  1.00 36.50           O  
ATOM      5  C5'   A A   1     -79.200 -55.222 -74.239  1.00 36.50           C  
ATOM      6  C4'   A A   1     -79.057 -56.611 -73.646  1.00 36.50           C  

==> seq_3_mxfold2_trroset_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Fri Jan 16 23:19:59 2026
ATOM      1  P     A A   1       7.196 -55.605 -60.530  1.00 31.61           P  
ATOM      2  OP1   A A   1       7.322 -54.266 -59.894  1.00 31.61           O  
ATOM      3  OP2   A A   1       7.557 -55.791 -61.961  1.00 31.61           O  
ATOM      4  O5'   A A   1       7.944 -56.708 -59.643  1.00 31.61           O  
ATOM      5  C5'   A A   1       8.023 -56.596 -58.226  1.00 31.61           C  
ATOM      6  C4'   A A   1       8.267 -57.927 -57.535  1.00 31.61           C  
DONE!