============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3.pdb ============================================================================= Error: recognition of atom ATOM 19 'H5' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 20 'HO5 DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 24 1H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 25 2H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 47 C5M DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 51 HN3 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 52 1HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 53 2HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 54 3HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 81 'H5' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 85 1H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 86 2H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 114 'H5' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 118 1H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 119 2H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 144 'H5' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 148 1H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 149 2H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 176 'H5' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 180 1H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 181 2H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 203 C5M DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 207 HN3 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 208 1HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 209 2HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 210 3HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 238 'H5' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 242 1H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 243 2H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 270 'H5' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 274 1H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 275 2H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 302 'H5' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 306 1H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 307 2H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 329 C5M DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 333 HN3 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 334 1HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 335 2HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 336 3HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 358 C5M DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 362 HN3 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 363 1HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 364 2HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 365 3HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 390 'H5' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 394 1H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 395 2H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 420 'H5' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 424 1H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 425 2H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 450 'H5' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 454 1H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 455 2H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 483 'H5' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 487 1H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 488 2H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 515 'H5' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 519 1H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 520 2H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 547 'H5' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 551 1H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 552 2H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 580 'H5' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 584 1H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 585 2H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 612 'H5' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 616 1H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 617 2H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 642 'H5' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 646 1H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 647 2H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 675 'H5' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 679 1H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 680 2H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 705 'H5' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 709 1H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 710 2H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 735 'H5' DC A 24 ... failed. Atom erased. Error: recognition of atom ATOM 739 1H2' DC A 24 ... failed. Atom erased. Error: recognition of atom ATOM 740 2H2' DC A 24 ... failed. Atom erased. Error: recognition of atom ATOM 765 'H5' DC A 25 ... failed. Atom erased. Error: recognition of atom ATOM 769 1H2' DC A 25 ... failed. Atom erased. Error: recognition of atom ATOM 770 2H2' DC A 25 ... failed. Atom erased. Error: recognition of atom ATOM 797 'H5' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 801 1H2' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 802 2H2' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 829 'H5' DA A 27 ... failed. Atom erased. Error: recognition of atom ATOM 833 1H2' DA A 27 ... failed. Atom erased. Error: recognition of atom ATOM 834 2H2' DA A 27 ... failed. Atom erased. Error: recognition of atom ATOM 859 'H5' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 863 1H2' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 864 2H2' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 889 'H5' DC A 29 ... failed. Atom erased. Error: recognition of atom ATOM 893 1H2' DC A 29 ... failed. Atom erased. Error: recognition of atom ATOM 894 2H2' DC A 29 ... failed. Atom erased. Error: recognition of atom ATOM 921 'H5' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 925 1H2' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 926 2H2' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 954 'H5' DG A 31 ... failed. Atom erased. Error: recognition of atom ATOM 958 1H2' DG A 31 ... failed. Atom erased. Error: recognition of atom ATOM 959 2H2' DG A 31 ... failed. Atom erased. Error: recognition of atom ATOM 987 'H5' DG A 32 ... failed. Atom erased. Error: recognition of atom ATOM 991 1H2' DG A 32 ... failed. Atom erased. Error: recognition of atom ATOM 992 2H2' DG A 32 ... failed. Atom erased. Error: recognition of atom ATOM 1019 'H5' DA A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1023 1H2' DA A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1024 2H2' DA A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1049 'H5' DC A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1053 1H2' DC A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1054 2H2' DC A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1082 'H5' DG A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1086 1H2' DG A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1087 2H2' DG A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1114 'H5' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1118 1H2' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1119 2H2' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1146 'H5' DA A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1150 1H2' DA A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1151 2H2' DA A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1173 C5M DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1177 HN3 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1178 1HM5 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1179 2HM5 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1180 3HM5 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1208 'H5' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1212 1H2' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1213 2H2' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1241 'H5' DG A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1245 1H2' DG A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1246 2H2' DG A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1273 'H5' DA A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1277 1H2' DA A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1278 2H2' DA A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1303 'H5' DC A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1307 1H2' DC A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1308 2H2' DC A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1330 C5M DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1334 HN3 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1335 1HM5 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1336 2HM5 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1337 3HM5 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1362 'H5' DC A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1366 1H2' DC A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1367 2H2' DC A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1395 'H5' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1399 1H2' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1400 2H2' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1422 C5M DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1426 HN3 DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1427 1HM5 DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1428 2HM5 DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1429 3HM5 DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1456 'H5' DA A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1460 1H2' DA A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1461 2H2' DA A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1486 'H5' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1490 1H2' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1491 2H2' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1516 'H5' DC A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1520 1H2' DC A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1521 2H2' DC A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1546 'H5' DC A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1550 1H2' DC A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1551 2H2' DC A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1573 C5M DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1577 HN3 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1578 1HM5 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1579 2HM5 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1580 3HM5 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1607 'H5' DA A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1611 1H2' DA A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1612 2H2' DA A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1637 'H5' DC A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1641 1H2' DC A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1642 2H2' DC A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1664 C5M DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1668 HN3 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1669 1HM5 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1670 2HM5 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1671 3HM5 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1696 'H5' DC A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1700 1H2' DC A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1701 2H2' DC A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1726 'H5' DC A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1730 1H2' DC A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1731 2H2' DC A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1758 'H5' DA A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1762 1H2' DA A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1763 2H2' DA A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1788 'H5' DC A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1792 1H2' DC A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1793 2H2' DC A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1815 C5M DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1819 HN3 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1820 1HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1821 2HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1822 3HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1849 'H5' DA A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1853 1H2' DA A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1854 2H2' DA A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1876 C5M DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1880 HN3 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1881 1HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1882 2HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1883 3HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1911 'H5' DG A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1915 1H2' DG A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1916 2H2' DG A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1941 'H5' DC A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1945 1H2' DC A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1946 2H2' DC A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1974 'H5' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1978 1H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1979 2H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 2001 C5M DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2005 HN3 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2006 1HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2007 2HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2008 3HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2033 'H5' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2037 1H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2038 2H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2066 'H5' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2070 1H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2071 2H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2098 'H5' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2102 1H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2103 2H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2128 'H5' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2132 1H2' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2133 2H2' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2161 'H5' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2165 1H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2166 2H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2193 'H5' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2197 1H2' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2198 2H2' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2226 'H5' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2230 1H2' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2231 2H2' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2259 'H5' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2263 1H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2264 2H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2286 C5M DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2290 HN3 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2291 1HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2292 2HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2293 3HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2318 'H5' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2322 1H2' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2323 2H2' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2345 C5M DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2349 HN3 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2350 1HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2351 2HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2352 3HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2379 'H5' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2383 1H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2384 2H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2412 'H5' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2416 1H2' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2417 2H2' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2444 'H5' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2448 1H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2449 2H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2476 'H5' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2480 1H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2481 2H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2503 C5M DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2507 HN3 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2508 1HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2509 2HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2510 3HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2537 'H5' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2541 1H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2542 2H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2567 'H5' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2571 1H2' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2572 2H2' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2597 'H5' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2601 1H2' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2602 2H2' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2629 'H5' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2633 1H2' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2634 2H2' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2662 'H5' DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2663 'HO3 DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2667 1H2' DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2668 2H2' DG A 86 ... failed. Atom erased. Missing atom added: HETATM 1 P DA A 1 0.184 0.738 -2.566 1.00 0.00 P Missing atom added: HETATM 24 H5'2 DA A 1 1.782 -0.814 -0.650 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 1 2.197 -0.124 3.703 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 1 0.204 -0.160 3.847 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 2 0.269 -4.130 4.508 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 2 -3.547 -3.159 6.788 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 2 -3.271 -4.739 7.510 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 2 -6.989 -1.154 4.793 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 2 -3.724 -1.967 1.680 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 2 -3.672 -0.966 1.253 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 2 -4.413 -2.576 1.090 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 2 -2.734 -2.422 1.655 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 3 -3.686 -7.995 7.457 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 3 -7.541 -7.023 9.318 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 3 -8.327 -7.264 7.495 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 4 -9.077 -11.022 7.888 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 4 -13.175 -9.602 7.429 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 4 -12.916 -9.895 5.469 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 5 -14.038 -13.824 5.124 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 5 -16.987 -12.157 2.221 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 5 -15.490 -12.259 0.900 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 6 -17.004 -15.783 -0.259 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 6 -18.020 -14.252 -4.281 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 6 -16.078 -14.596 -4.607 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 7 -16.868 -18.177 -5.654 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 7 -13.176 -16.432 -7.929 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 7 -13.555 -17.640 -9.151 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 7 -9.865 -14.229 -5.664 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 7 -12.005 -17.239 -2.913 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 7 -12.145 -16.566 -2.067 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 7 -11.083 -17.808 -2.772 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 7 -12.847 -17.930 -2.965 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 8 -13.059 -20.542 -10.763 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 8 -9.541 -19.568 -13.124 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 8 -8.609 -20.178 -11.464 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 9 -8.339 -23.711 -12.801 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 9 -4.150 -22.564 -12.907 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 9 -4.067 -23.235 -11.025 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 10 -2.993 -26.767 -11.925 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 10 0.612 -25.634 -9.760 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 10 -0.316 -26.306 -8.122 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 11 0.851 -29.998 -8.495 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 11 0.251 -28.558 -4.056 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 11 1.256 -29.935 -3.622 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 11 -3.373 -26.574 -2.534 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 11 -4.216 -28.317 -6.708 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 11 -4.614 -27.403 -7.144 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 11 -5.037 -28.928 -6.330 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 11 -3.671 -28.875 -7.468 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 12 1.843 -33.887 -3.488 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 12 -0.649 -32.711 0.125 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 12 -0.088 -34.207 0.863 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 12 -4.361 -30.616 0.522 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 12 -3.595 -31.502 -3.905 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 12 -3.670 -30.485 -4.293 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 12 -4.569 -31.991 -3.991 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 12 -2.866 -32.057 -4.500 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 13 -0.576 -37.895 1.006 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 13 -3.389 -37.163 4.308 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 13 -4.799 -37.307 2.898 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 14 -5.056 -41.441 3.657 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 14 -8.891 -40.094 5.250 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 14 -9.495 -40.075 3.345 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 15 -10.674 -44.066 4.284 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 15 -13.897 -41.400 1.871 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 15 -13.235 -42.105 0.121 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 16 -14.122 -43.299 -0.475 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 16 -13.518 -45.710 -4.114 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 16 -13.343 -47.262 -2.866 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 17 -16.850 -48.623 -5.788 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 17 -16.492 -46.848 -8.128 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 17 -14.818 -47.865 -8.529 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 18 -19.234 -52.031 -8.591 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 18 -19.583 -49.190 -12.698 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 18 -17.902 -49.856 -13.551 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 19 -17.692 -53.368 -16.161 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 19 -14.080 -53.731 -17.830 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 19 -13.612 -54.586 -16.084 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 20 -14.343 -57.973 -17.685 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 20 -10.056 -58.535 -17.455 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 20 -10.349 -59.214 -15.598 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 21 -11.155 -63.341 -16.456 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 21 -8.209 -63.754 -13.055 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 21 -9.712 -63.408 -11.782 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 22 -9.845 -67.178 -11.446 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 22 -7.565 -66.766 -7.613 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 22 -9.309 -66.113 -6.882 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 23 -10.437 -69.467 -5.344 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 23 -12.479 -67.603 -2.094 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 23 -13.975 -67.468 -3.413 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 24 -14.637 -71.163 -1.517 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 24 -16.628 -69.315 2.048 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 24 -18.018 -68.784 0.714 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 25 -20.311 -71.792 1.432 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 25 -23.473 -68.530 1.655 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 25 -23.684 -68.819 -0.311 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 26 -26.526 -72.085 1.651 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 26 -29.263 -68.366 1.003 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 26 -29.141 -68.739 -0.957 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 27 -32.778 -70.633 -0.149 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 27 -33.664 -66.719 -2.440 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 27 -33.151 -67.662 -4.126 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 28 -37.543 -68.391 -4.211 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 28 -36.394 -65.610 -7.808 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 28 -35.797 -67.260 -8.765 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 29 -40.374 -66.622 -9.472 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 29 -38.480 -64.391 -13.130 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 29 -38.062 -66.157 -13.969 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 30 -43.017 -68.140 -14.900 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 30 -41.776 -65.340 -18.210 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 30 -40.873 -66.772 -19.274 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 31 -44.481 -69.552 -20.780 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 31 -41.665 -69.459 -24.442 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 31 -40.682 -71.011 -23.653 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 32 -42.906 -73.291 -25.885 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 32 -39.837 -74.882 -28.374 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 32 -39.776 -76.334 -27.002 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 33 -42.032 -78.958 -28.482 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 33 -38.856 -81.823 -27.390 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 33 -39.798 -82.050 -25.642 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 34 -42.212 -84.245 -24.920 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 34 -39.039 -86.822 -23.661 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 34 -40.468 -86.483 -22.305 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 35 -42.410 -90.238 -22.447 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 35 -41.551 -90.598 -18.039 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 35 -43.133 -89.389 -17.862 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 36 -45.832 -92.937 -17.354 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 36 -47.097 -91.760 -13.396 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 36 -48.154 -90.365 -14.362 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 37 -51.217 -91.569 -18.190 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 37 -54.000 -91.596 -19.521 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 37 -53.999 -89.681 -18.945 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 38 -52.732 -88.055 -23.567 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 38 -52.049 -91.307 -27.222 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 38 -50.871 -90.094 -27.705 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 38 -54.154 -94.196 -29.610 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 38 -56.858 -90.719 -28.306 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 38 -57.650 -91.341 -27.920 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 38 -57.042 -90.452 -29.337 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 38 -56.726 -89.838 -27.698 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 39 -54.853 -86.172 -27.872 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 39 -57.364 -84.203 -27.711 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 39 -57.297 -84.641 -25.761 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 40 -55.533 -82.563 -23.933 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 40 -58.452 -81.069 -22.745 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 40 -57.598 -82.012 -21.202 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 41 -57.333 -78.551 -19.698 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 41 -59.069 -79.431 -15.968 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 41 -57.170 -79.836 -15.491 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 42 -55.761 -79.011 -15.393 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 42 -55.830 -80.131 -11.548 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 42 -53.951 -80.810 -11.466 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 43 -50.035 -78.024 -11.678 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 43 -49.057 -80.833 -11.861 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 43 -48.063 -80.791 -10.411 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 43 -48.348 -83.633 -14.822 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 43 -49.488 -79.586 -16.658 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 43 -50.256 -79.987 -17.303 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 43 -48.544 -79.514 -17.182 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 43 -49.780 -78.623 -16.265 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 44 -44.501 -79.705 -10.666 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 44 -43.378 -83.275 -9.339 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 44 -42.690 -82.866 -11.170 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 45 -38.972 -82.321 -9.939 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 45 -37.566 -85.779 -12.113 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 45 -37.295 -84.483 -13.611 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 46 -33.987 -81.292 -12.843 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 46 -35.457 -82.038 -16.962 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 46 -34.034 -82.866 -17.582 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 46 -38.008 -80.332 -19.187 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 46 -39.036 -79.064 -14.913 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 46 -40.113 -79.203 -14.973 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 46 -38.788 -78.028 -15.147 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 46 -38.694 -79.300 -13.907 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 47 -30.251 -83.182 -16.918 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 47 -28.152 -84.180 -13.933 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 47 -30.106 -84.540 -13.716 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 48 -27.958 -86.113 -18.352 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 48 -27.305 -85.183 -22.361 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 48 -28.926 -84.034 -22.147 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 49 -27.798 -79.960 -20.441 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 49 -31.033 -81.266 -23.907 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 49 -32.029 -79.586 -23.481 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 50 -28.977 -76.688 -25.248 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 50 -31.910 -74.841 -27.991 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 50 -32.368 -73.669 -26.438 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 51 -30.037 -71.091 -27.787 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 51 -33.567 -69.425 -24.810 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 51 -33.130 -67.873 -25.515 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 51 -34.573 -70.446 -20.700 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 51 -30.609 -72.423 -21.926 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 51 -30.834 -73.401 -21.496 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 51 -30.063 -71.826 -21.190 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 51 -29.984 -72.557 -22.810 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 52 -30.233 -65.579 -27.734 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 52 -33.833 -62.918 -29.021 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 52 -33.874 -62.254 -27.136 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 53 -30.916 -59.214 -28.796 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 53 -33.856 -55.874 -28.988 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 53 -33.600 -55.858 -27.006 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 54 -30.421 -53.535 -28.960 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 54 -33.492 -50.872 -26.466 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 54 -32.561 -49.513 -27.086 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 54 -34.889 -52.237 -22.521 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 54 -31.651 -55.145 -23.946 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 54 -32.181 -56.073 -23.759 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 54 -31.022 -54.895 -23.096 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 54 -31.045 -55.236 -24.842 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 55 -29.454 -47.060 -26.930 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 55 -32.155 -43.929 -25.023 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 55 -31.954 -45.104 -23.419 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 56 -28.000 -42.725 -22.899 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 56 -30.453 -40.405 -20.132 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 56 -30.230 -41.966 -18.904 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 57 -27.208 -39.587 -17.409 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 57 -30.575 -39.490 -14.267 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 57 -30.115 -41.361 -13.733 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 58 -28.276 -39.865 -10.795 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 58 -30.697 -43.475 -8.893 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 58 -29.076 -44.570 -9.304 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 59 -27.748 -42.586 -5.380 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 59 -27.586 -47.277 -6.938 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 59 -27.501 -47.875 -5.285 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 59 -25.151 -49.541 -9.382 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 59 -24.221 -45.028 -9.899 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 59 -24.145 -45.079 -10.988 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 59 -23.217 -45.106 -9.469 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 59 -24.648 -44.060 -9.620 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 60 -26.878 -48.207 -2.003 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 60 -26.697 -52.240 -4.705 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 60 -24.707 -52.043 -4.736 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 61 -25.545 -54.561 -2.034 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 61 -21.489 -56.451 -3.405 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 61 -22.159 -57.868 -2.605 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 61 -17.615 -54.454 -2.651 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 61 -20.968 -51.718 -1.090 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 61 -20.616 -50.796 -1.545 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 61 -20.598 -51.792 -0.070 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 61 -22.054 -51.739 -1.090 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 62 -21.002 -57.660 -0.908 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 62 -18.707 -59.835 2.562 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 62 -17.482 -59.913 0.983 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 63 -15.243 -56.676 1.622 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 63 -11.997 -59.685 1.042 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 63 -12.125 -59.235 -0.901 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 64 -9.105 -57.100 -0.099 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 64 -6.136 -59.709 -1.953 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 64 -6.792 -58.808 -3.613 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 65 -4.111 -56.266 -3.096 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 65 -5.074 -57.179 -7.644 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 65 -3.469 -56.506 -7.905 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 65 -9.229 -57.303 -9.151 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 65 -9.394 -55.201 -5.099 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 65 -10.132 -55.856 -4.642 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 65 -9.888 -54.327 -5.521 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 65 -8.670 -54.885 -4.351 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 66 -1.705 -53.405 -8.817 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 66 -3.600 -53.097 -12.849 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 66 -5.015 -52.000 -11.960 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 67 -4.948 -48.762 -11.847 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 67 -7.691 -49.553 -13.327 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 67 -8.413 -48.534 -11.766 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 68 -6.340 -44.754 -15.605 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 68 -10.426 -44.613 -17.942 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 68 -11.145 -43.643 -16.349 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 69 -10.348 -40.507 -14.962 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 69 -13.207 -40.933 -13.552 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 69 -12.052 -40.689 -11.938 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 70 -13.808 -36.657 -11.636 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 70 -16.518 -37.694 -8.327 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 70 -14.915 -37.517 -7.145 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 71 -14.187 -31.724 -10.690 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 71 -16.077 -29.289 -13.513 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 71 -17.691 -30.092 -12.648 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 72 -18.327 -26.996 -10.241 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 72 -22.379 -27.071 -11.133 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 72 -22.529 -28.123 -9.440 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 73 -23.456 -25.496 -7.101 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 73 -26.996 -27.757 -6.836 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 73 -26.066 -28.679 -5.326 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 74 -28.584 -25.732 -3.715 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 74 -28.974 -29.331 -1.315 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 74 -30.195 -28.416 -0.439 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 74 -25.866 -32.056 0.053 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 74 -23.906 -29.005 -2.730 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 74 -23.474 -29.695 -3.454 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 74 -23.169 -28.774 -1.961 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 74 -24.204 -28.088 -3.234 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 75 -31.052 -26.297 2.162 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 75 -30.898 -29.791 4.810 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 75 -28.976 -29.344 5.132 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 76 -30.230 -27.566 8.193 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 76 -25.674 -29.304 8.059 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 76 -25.654 -28.831 9.753 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 76 -22.323 -28.453 5.634 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 76 -25.854 -25.938 3.992 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 76 -25.790 -26.271 2.947 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 76 -25.295 -24.995 4.085 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 76 -26.909 -25.731 4.220 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 77 -25.878 -25.649 9.969 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 77 -25.772 -24.956 13.524 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 77 -26.481 -26.774 13.089 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 78 -21.107 -24.737 11.368 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 78 -18.532 -28.181 10.921 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 78 -19.358 -27.520 9.225 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 79 -16.543 -25.967 6.679 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 79 -16.153 -25.219 3.915 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 79 -14.994 -26.770 4.414 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 80 -16.423 -31.132 4.233 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 80 -15.400 -33.791 7.568 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 80 -17.367 -34.144 7.498 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 81 -17.107 -37.190 4.995 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 81 -21.368 -36.353 6.448 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 81 -21.681 -38.079 6.325 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 81 -24.179 -33.233 5.983 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 81 -20.463 -32.276 3.456 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 81 -20.227 -31.314 3.903 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 81 -21.085 -32.130 2.574 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 81 -19.545 -32.786 3.175 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 82 -22.583 -40.805 4.770 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 82 -26.532 -38.153 5.550 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 82 -26.444 -37.636 3.621 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 83 -26.281 -39.327 0.514 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 83 -29.288 -36.465 -1.597 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 83 -27.723 -36.132 -2.795 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 84 -28.004 -38.103 -6.520 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 84 -29.945 -34.566 -5.986 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 84 -28.286 -34.188 -7.035 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 85 -32.390 -36.686 -10.716 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 85 -30.265 -32.752 -12.713 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 85 -28.711 -33.764 -13.460 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 86 -29.614 -34.963 -17.117 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 86 -26.091 -33.156 -18.538 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 86 -24.984 -34.679 -17.865 1.00 0.00 H Number of atoms: 2717 Number of residues: 86 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. A 1 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. A 1 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. A 1 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. A 1 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. A 1 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2933 Number of angles built: 5319 Number of dihedrals built: 7943 Number of impropers built: 580 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 3681434 Number of van der Waals pairs: 293429 Number of H-bonds built: 54 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 13 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 117109.8331 kcal/mol (116844.9413 without restraints) Performing minimization step: 2. Total energy = 114997.3603 kcal/mol (114740.6337 without restraints) Performing minimization step: 3. Total energy = 112952.4647 kcal/mol (112703.5283 without restraints) Performing minimization step: 4. Total energy = 110972.0690 kcal/mol (110730.5712 without restraints) Performing minimization step: 5. Total energy = 109053.2877 kcal/mol (108818.8987 without restraints) Performing minimization step: 6. Total energy = 107193.4105 kcal/mol (106965.8201 without restraints) Performing minimization step: 7. Total energy = 105389.8896 kcal/mol (105168.8064 without restraints) Performing minimization step: 8. Total energy = 103640.3274 kcal/mol (103425.4768 without restraints) Performing minimization step: 9. Total energy = 101942.4654 kcal/mol (101733.5886 without restraints) Performing minimization step: 10. Total energy = 100294.1737 kcal/mol (100091.0266 without restraints) Performing minimization step: 11. Total energy = 98693.4420 kcal/mol (98495.7940 without restraints) Performing minimization step: 12. Total energy = 97138.3711 kcal/mol (96946.0045 without restraints) Performing minimization step: 13. Total energy = 95627.1651 kcal/mol (95439.8736 without restraints) Performing minimization step: 14. Total energy = 94158.1256 kcal/mol (93975.7141 without restraints) Performing minimization step: 15. Total energy = 92729.6422 kcal/mol (92551.9258 without restraints) Performing minimization step: 16. Total energy = 91340.1893 kcal/mol (91166.9927 without restraints) Performing minimization step: 17. Total energy = 89988.3196 kcal/mol (89819.4765 without restraints) Performing minimization step: 18. Total energy = 88672.6589 kcal/mol (88508.0111 without restraints) Performing minimization step: 19. Total energy = 87391.9013 kcal/mol (87231.2986 without restraints) Performing minimization step: 20. Total energy = 86144.8058 kcal/mol (85988.1054 without restraints) Performing minimization step: 21. Total energy = 84930.1912 kcal/mol (84777.2570 without restraints) Performing minimization step: 22. Total energy = 83746.9325 kcal/mol (83597.6349 without restraints) Performing minimization step: 23. Total energy = 82593.9578 kcal/mol (82448.1735 without restraints) Performing minimization step: 24. Total energy = 81470.2457 kcal/mol (81327.8567 without restraints) Performing minimization step: 25. Total energy = 80374.8206 kcal/mol (80235.7145 without restraints) Performing minimization step: 26. Total energy = 79306.7515 kcal/mol (79170.8211 without restraints) Performing minimization step: 27. Total energy = 78265.1490 kcal/mol (78132.2914 without restraints) Performing minimization step: 28. Total energy = 77249.1622 kcal/mol (77119.2794 without restraints) Performing minimization step: 29. Total energy = 76257.9775 kcal/mol (76130.9754 without restraints) Performing minimization step: 30. Total energy = 75290.8158 kcal/mol (75166.6046 without restraints) Performing minimization step: 31. Total energy = 74346.9310 kcal/mol (74225.4244 without restraints) Performing minimization step: 32. Total energy = 73425.6077 kcal/mol (73306.7231 without restraints) Performing minimization step: 33. Total energy = 72526.1600 kcal/mol (72409.8180 without restraints) Performing minimization step: 34. Total energy = 71647.9294 kcal/mol (71534.0540 without restraints) Performing minimization step: 35. Total energy = 70790.2839 kcal/mol (70678.8019 without restraints) Performing minimization step: 36. Total energy = 69952.6162 kcal/mol (69843.4572 without restraints) Performing minimization step: 37. Total energy = 69134.3423 kcal/mol (69027.4389 without restraints) Performing minimization step: 38. Total energy = 68334.9008 kcal/mol (68230.1880 without restraints) Performing minimization step: 39. Total energy = 67553.7512 kcal/mol (67451.1663 without restraints) Performing minimization step: 40. Total energy = 66790.3732 kcal/mol (66689.8561 without restraints) Performing minimization step: 41. Total energy = 66044.2653 kcal/mol (65945.7578 without restraints) Performing minimization step: 42. Total energy = 65314.9449 kcal/mol (65218.3911 without restraints) Performing minimization step: 43. Total energy = 64601.9459 kcal/mol (64507.2918 without restraints) Performing minimization step: 44. Total energy = 63904.8189 kcal/mol (63812.0123 without restraints) Performing minimization step: 45. Total energy = 63223.1300 kcal/mol (63132.1207 without restraints) Performing minimization step: 46. Total energy = 62556.4606 kcal/mol (62467.2000 without restraints) Performing minimization step: 47. Total energy = 61904.4057 kcal/mol (61816.8468 without restraints) Performing minimization step: 48. Total energy = 61266.5745 kcal/mol (61180.6720 without restraints) Performing minimization step: 49. Total energy = 60642.5888 kcal/mol (60558.2988 without restraints) Performing minimization step: 50. Total energy = 60032.0830 kcal/mol (59949.3630 without restraints) Performing minimization step: 51. Total energy = 59434.7032 kcal/mol (59353.5121 without restraints) Performing minimization step: 52. Total energy = 58850.1070 kcal/mol (58770.4051 without restraints) Performing minimization step: 53. Total energy = 58277.9627 kcal/mol (58199.7114 without restraints) Performing minimization step: 54. Total energy = 57717.9491 kcal/mol (57641.1112 without restraints) Performing minimization step: 55. Total energy = 57169.7550 kcal/mol (57094.2943 without restraints) Performing minimization step: 56. Total energy = 56633.0791 kcal/mol (56558.9605 without restraints) Performing minimization step: 57. Total energy = 56107.6283 kcal/mol (56034.8178 without restraints) Performing minimization step: 58. Total energy = 55593.1192 kcal/mol (55521.5840 without restraints) Performing minimization step: 59. Total energy = 55089.2767 kcal/mol (55018.9847 without restraints) Performing minimization step: 60. Total energy = 54595.8339 kcal/mol (54526.7540 without restraints) Performing minimization step: 61. Total energy = 54112.5315 kcal/mol (54044.6336 without restraints) Performing minimization step: 62. Total energy = 53639.1179 kcal/mol (53572.3728 without restraints) Performing minimization step: 63. Total energy = 53175.3486 kcal/mol (53109.7278 without restraints) Performing minimization step: 64. Total energy = 52720.9869 kcal/mol (52656.4629 without restraints) Performing minimization step: 65. Total energy = 52275.8017 kcal/mol (52212.3475 without restraints) Performing minimization step: 66. Total energy = 51839.5689 kcal/mol (51777.1585 without restraints) Performing minimization step: 67. Total energy = 51412.0708 kcal/mol (51350.6788 without restraints) Performing minimization step: 68. Total energy = 50993.0956 kcal/mol (50932.6976 without restraints) Performing minimization step: 69. Total energy = 50582.4377 kcal/mol (50523.0096 without restraints) Performing minimization step: 70. Total energy = 50179.8968 kcal/mol (50121.4152 without restraints) Performing minimization step: 71. Total energy = 49785.2782 kcal/mol (49727.7206 without restraints) Performing minimization step: 72. Total energy = 49398.3922 kcal/mol (49341.7365 without restraints) Performing minimization step: 73. Total energy = 49019.0542 kcal/mol (48963.2789 without restraints) Performing minimization step: 74. Total energy = 48647.0857 kcal/mol (48592.1699 without restraints) Performing minimization step: 75. Total energy = 48282.3117 kcal/mol (48228.2351 without restraints) Performing minimization step: 76. Total energy = 47924.5618 kcal/mol (47871.3046 without restraints) Performing minimization step: 77. Total energy = 47573.6715 kcal/mol (47521.2144 without restraints) Performing minimization step: 78. Total energy = 47229.4789 kcal/mol (47177.8033 without restraints) Performing minimization step: 79. Total energy = 46891.8276 kcal/mol (46840.9150 without restraints) Performing minimization step: 80. Total energy = 46560.5642 kcal/mol (46510.3970 without restraints) Performing minimization step: 81. Total energy = 46235.5403 kcal/mol (46186.1011 without restraints) Performing minimization step: 82. Total energy = 45916.6112 kcal/mol (45867.8831 without restraints) Performing minimization step: 83. Total energy = 45603.6354 kcal/mol (45555.6019 without restraints) Performing minimization step: 84. Total energy = 45296.4752 kcal/mol (45249.1204 without restraints) Performing minimization step: 85. Total energy = 44994.9966 kcal/mol (44948.3048 without restraints) Performing minimization step: 86. Total energy = 44699.0690 kcal/mol (44653.0249 without restraints) Performing minimization step: 87. Total energy = 44408.5649 kcal/mol (44363.1538 without restraints) Performing minimization step: 88. Total energy = 44123.3605 kcal/mol (44078.5678 without restraints) Performing minimization step: 89. Total energy = 43843.3343 kcal/mol (43799.1461 without restraints) Performing minimization step: 90. Total energy = 43568.3687 kcal/mol (43524.7711 without restraints) Performing minimization step: 91. Total energy = 43298.3487 kcal/mol (43255.3283 without restraints) Performing minimization step: 92. Total energy = 43033.1621 kcal/mol (42990.7059 without restraints) Performing minimization step: 93. Total energy = 42772.6997 kcal/mol (42730.7950 without restraints) Performing minimization step: 94. Total energy = 42516.8550 kcal/mol (42475.4895 without restraints) Performing minimization step: 95. Total energy = 42265.5238 kcal/mol (42224.6850 without restraints) Performing minimization step: 96. Total energy = 42018.6049 kcal/mol (41978.2812 without restraints) Performing minimization step: 97. Total energy = 41775.9995 kcal/mol (41736.1795 without restraints) Performing minimization step: 98. Total energy = 41537.6113 kcal/mol (41498.2837 without restraints) Performing minimization step: 99. Total energy = 41303.3463 kcal/mol (41264.5000 without restraints) Performing minimization step: 100. Total energy = 41073.1126 kcal/mol (41034.7370 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 101. Total energy = 40846.8209 kcal/mol (40808.9055 without restraints) Performing minimization step: 102. Total energy = 40624.3835 kcal/mol (40586.9185 without restraints) Performing minimization step: 103. Total energy = 40405.7159 kcal/mol (40368.6910 without restraints) Performing minimization step: 104. Total energy = 40190.7346 kcal/mol (40154.1402 without restraints) Performing minimization step: 105. Total energy = 39979.3590 kcal/mol (39943.1857 without restraints) Performing minimization step: 106. Total energy = 39771.5095 kcal/mol (39735.7481 without restraints) Performing minimization step: 107. Total energy = 39567.1092 kcal/mol (39531.7507 without restraints) Performing minimization step: 108. Total energy = 39366.0828 kcal/mol (39331.1184 without restraints) Performing minimization step: 109. Total energy = 39168.3568 kcal/mol (39133.7779 without restraints) Performing minimization step: 110. Total energy = 38973.8596 kcal/mol (38939.6579 without restraints) Performing minimization step: 111. Total energy = 38782.5211 kcal/mol (38748.6885 without restraints) Performing minimization step: 112. Total energy = 38594.2729 kcal/mol (38560.8013 without restraints) Performing minimization step: 113. Total energy = 38409.0489 kcal/mol (38375.9306 without restraints) Performing minimization step: 114. Total energy = 38226.7836 kcal/mol (38194.0111 without restraints) Performing minimization step: 115. Total energy = 38047.4137 kcal/mol (38014.9794 without restraints) Performing minimization step: 116. Total energy = 37870.8771 kcal/mol (37838.7740 without restraints) Performing minimization step: 117. Total energy = 37697.1132 kcal/mol (37665.3342 without restraints) Performing minimization step: 118. Total energy = 37526.0635 kcal/mol (37494.6016 without restraints) Performing minimization step: 119. Total energy = 37357.6700 kcal/mol (37326.5186 without restraints) Performing minimization step: 120. Total energy = 37191.8764 kcal/mol (37161.0289 without restraints) Performing minimization step: 121. Total energy = 37028.6276 kcal/mol (36998.0776 without restraints) Performing minimization step: 122. Total energy = 36867.8704 kcal/mol (36837.6117 without restraints) Performing minimization step: 123. Total energy = 36709.5522 kcal/mol (36679.5786 without restraints) Performing minimization step: 124. Total energy = 36553.6218 kcal/mol (36523.9275 without restraints) Performing minimization step: 125. Total energy = 36400.0294 kcal/mol (36370.6084 without restraints) Performing minimization step: 126. Total energy = 36248.7261 kcal/mol (36219.5729 without restraints) Performing minimization step: 127. Total energy = 36099.6645 kcal/mol (36070.7733 without restraints) Performing minimization step: 128. Total energy = 35952.7978 kcal/mol (35924.1634 without restraints) Performing minimization step: 129. Total energy = 35808.0809 kcal/mol (35779.6979 without restraints) Performing minimization step: 130. Total energy = 35665.4692 kcal/mol (35637.3325 without restraints) Performing minimization step: 131. Total energy = 35524.9198 kcal/mol (35497.0243 without restraints) Performing minimization step: 132. Total energy = 35386.3898 kcal/mol (35358.7306 without restraints) Performing minimization step: 133. Total energy = 35249.8381 kcal/mol (35222.4102 without restraints) Performing minimization step: 134. Total energy = 35115.2242 kcal/mol (35088.0230 without restraints) Performing minimization step: 135. Total energy = 34982.5087 kcal/mol (34955.5299 without restraints) Performing minimization step: 136. Total energy = 34851.6537 kcal/mol (34824.8927 without restraints) Performing minimization step: 137. Total energy = 34722.6211 kcal/mol (34696.0732 without restraints) Performing minimization step: 138. Total energy = 34595.3739 kcal/mol (34569.0351 without restraints) Performing minimization step: 139. Total energy = 34469.8769 kcal/mol (34443.7429 without restraints) Performing minimization step: 140. Total energy = 34346.0939 kcal/mol (34320.1605 without restraints) Performing minimization step: 141. Total energy = 34223.9912 kcal/mol (34198.2547 without restraints) Performing minimization step: 142. Total energy = 34103.5354 kcal/mol (34077.9916 without restraints) Performing minimization step: 143. Total energy = 33984.6941 kcal/mol (33959.3393 without restraints) Performing minimization step: 144. Total energy = 33867.4341 kcal/mol (33842.2646 without restraints) Performing minimization step: 145. Total energy = 33751.7246 kcal/mol (33726.7366 without restraints) Performing minimization step: 146. Total energy = 33637.5351 kcal/mol (33612.7254 without restraints) Performing minimization step: 147. Total energy = 33524.8360 kcal/mol (33500.2009 without restraints) Performing minimization step: 148. Total energy = 33413.5977 kcal/mol (33389.1337 without restraints) Performing minimization step: 149. Total energy = 33303.7919 kcal/mol (33279.4958 without restraints) Performing minimization step: 150. Total energy = 33195.3907 kcal/mol (33171.2591 without restraints) Performing minimization step: 151. Total energy = 33088.3665 kcal/mol (33064.3964 without restraints) Performing minimization step: 152. Total energy = 32982.6929 kcal/mol (32958.8811 without restraints) Performing minimization step: 153. Total energy = 32878.3436 kcal/mol (32854.6870 without restraints) Performing minimization step: 154. Total energy = 32775.2938 kcal/mol (32751.7896 without restraints) Performing minimization step: 155. Total energy = 32673.5173 kcal/mol (32650.1624 without restraints) Performing minimization step: 156. Total energy = 32572.9902 kcal/mol (32549.7819 without restraints) Performing minimization step: 157. Total energy = 32473.6890 kcal/mol (32450.6245 without restraints) Performing minimization step: 158. Total energy = 32375.5897 kcal/mol (32352.6662 without restraints) Performing minimization step: 159. Total energy = 32278.6701 kcal/mol (32255.8850 without restraints) Performing minimization step: 160. Total energy = 32182.9075 kcal/mol (32160.2580 without restraints) Performing minimization step: 161. Total energy = 32088.2802 kcal/mol (32065.7641 without restraints) Performing minimization step: 162. Total energy = 31994.7669 kcal/mol (31972.3816 without restraints) Performing minimization step: 163. Total energy = 31902.3465 kcal/mol (31880.0894 without restraints) Performing minimization step: 164. Total energy = 31810.9987 kcal/mol (31788.8677 without restraints) Performing minimization step: 165. Total energy = 31720.7036 kcal/mol (31698.6962 without restraints) Performing minimization step: 166. Total energy = 31631.4414 kcal/mol (31609.5553 without restraints) Performing minimization step: 167. Total energy = 31543.1929 kcal/mol (31521.4259 without restraints) Performing minimization step: 168. Total energy = 31455.9397 kcal/mol (31434.2896 without restraints) Performing minimization step: 169. Total energy = 31369.6633 kcal/mol (31348.1281 without restraints) Performing minimization step: 170. Total energy = 31284.3457 kcal/mol (31262.9231 without restraints) Performing minimization step: 171. Total energy = 31199.9688 kcal/mol (31178.6569 without restraints) Performing minimization step: 172. Total energy = 31116.5165 kcal/mol (31095.3131 without restraints) Performing minimization step: 173. Total energy = 31033.9711 kcal/mol (31012.8746 without restraints) Performing minimization step: 174. Total energy = 30952.3167 kcal/mol (30931.3249 without restraints) Performing minimization step: 175. Total energy = 30871.5369 kcal/mol (30850.6479 without restraints) Performing minimization step: 176. Total energy = 30791.6157 kcal/mol (30770.8276 without restraints) Performing minimization step: 177. Total energy = 30712.5382 kcal/mol (30691.8497 without restraints) Performing minimization step: 178. Total energy = 30634.2889 kcal/mol (30613.6978 without restraints) Performing minimization step: 179. Total energy = 30556.8528 kcal/mol (30536.3573 without restraints) Performing minimization step: 180. Total energy = 30480.2159 kcal/mol (30459.8146 without restraints) Performing minimization step: 181. Total energy = 30404.3636 kcal/mol (30384.0547 without restraints) Performing minimization step: 182. Total energy = 30329.2821 kcal/mol (30309.0640 without restraints) Performing minimization step: 183. Total energy = 30254.9576 kcal/mol (30234.8288 without restraints) Performing minimization step: 184. Total energy = 30181.3771 kcal/mol (30161.3360 without restraints) Performing minimization step: 185. Total energy = 30108.5276 kcal/mol (30088.5726 without restraints) Performing minimization step: 186. Total energy = 30036.3958 kcal/mol (30016.5253 without restraints) Performing minimization step: 187. Total energy = 29964.9694 kcal/mol (29945.1822 without restraints) Performing minimization step: 188. Total energy = 29894.2362 kcal/mol (29874.5308 without restraints) Performing minimization step: 189. Total energy = 29824.1843 kcal/mol (29804.5594 without restraints) Performing minimization step: 190. Total energy = 29754.8015 kcal/mol (29735.2555 without restraints) Performing minimization step: 191. Total energy = 29686.0768 kcal/mol (29666.6085 without restraints) Performing minimization step: 192. Total energy = 29617.9985 kcal/mol (29598.6065 without restraints) Performing minimization step: 193. Total energy = 29550.5557 kcal/mol (29531.2389 without restraints) Performing minimization step: 194. Total energy = 29483.7374 kcal/mol (29464.4942 without restraints) Performing minimization step: 195. Total energy = 29417.5331 kcal/mol (29398.3626 without restraints) Performing minimization step: 196. Total energy = 29351.9324 kcal/mol (29332.8333 without restraints) Performing minimization step: 197. Total energy = 29286.9255 kcal/mol (29267.8967 without restraints) Performing minimization step: 198. Total energy = 29222.5022 kcal/mol (29203.5422 without restraints) Performing minimization step: 199. Total energy = 29158.6519 kcal/mol (29139.7598 without restraints) Performing minimization step: 200. Total energy = 29095.3659 kcal/mol (29076.5405 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 201. Total energy = 29032.6338 kcal/mol (29013.8741 without restraints) Performing minimization step: 202. Total energy = 28970.4469 kcal/mol (28951.7518 without restraints) Performing minimization step: 203. Total energy = 28908.7966 kcal/mol (28890.1652 without restraints) Performing minimization step: 204. Total energy = 28847.6735 kcal/mol (28829.1045 without restraints) Performing minimization step: 205. Total energy = 28787.0695 kcal/mol (28768.5620 without restraints) Performing minimization step: 206. Total energy = 28726.9756 kcal/mol (28708.5287 without restraints) Performing minimization step: 207. Total energy = 28667.3835 kcal/mol (28648.9961 without restraints) Performing minimization step: 208. Total energy = 28608.2851 kcal/mol (28589.9562 without restraints) Performing minimization step: 209. Total energy = 28549.6721 kcal/mol (28531.4008 without restraints) Performing minimization step: 210. Total energy = 28491.5369 kcal/mol (28473.3225 without restraints) Performing minimization step: 211. Total energy = 28433.8719 kcal/mol (28415.7133 without restraints) Performing minimization step: 212. Total energy = 28376.6694 kcal/mol (28358.5658 without restraints) Performing minimization step: 213. Total energy = 28319.9220 kcal/mol (28301.8726 without restraints) Performing minimization step: 214. Total energy = 28263.6228 kcal/mol (28245.6266 without restraints) Performing minimization step: 215. Total energy = 28207.7634 kcal/mol (28189.8196 without restraints) Performing minimization step: 216. Total energy = 28152.3379 kcal/mol (28134.4458 without restraints) Performing minimization step: 217. Total energy = 28097.3395 kcal/mol (28079.4982 without restraints) Performing minimization step: 218. Total energy = 28042.7612 kcal/mol (28024.9700 without restraints) Performing minimization step: 219. Total energy = 27988.5965 kcal/mol (27970.8545 without restraints) Performing minimization step: 220. Total energy = 27934.8389 kcal/mol (27917.1456 without restraints) Performing minimization step: 221. Total energy = 27881.4821 kcal/mol (27863.8365 without restraints) Performing minimization step: 222. Total energy = 27828.5197 kcal/mol (27810.9212 without restraints) Performing minimization step: 223. Total energy = 27775.9457 kcal/mol (27758.3936 without restraints) Performing minimization step: 224. Total energy = 27723.7542 kcal/mol (27706.2477 without restraints) Performing minimization step: 225. Total energy = 27671.9396 kcal/mol (27654.4780 without restraints) Performing minimization step: 226. Total energy = 27620.4951 kcal/mol (27603.0780 without restraints) Performing minimization step: 227. Total energy = 27569.4160 kcal/mol (27552.0426 without restraints) Performing minimization step: 228. Total energy = 27518.6968 kcal/mol (27501.3666 without restraints) Performing minimization step: 229. Total energy = 27468.3319 kcal/mol (27451.0440 without restraints) Performing minimization step: 230. Total energy = 27418.3155 kcal/mol (27401.0694 without restraints) Performing minimization step: 231. Total energy = 27368.6432 kcal/mol (27351.4385 without restraints) Performing minimization step: 232. Total energy = 27319.3093 kcal/mol (27302.1450 without restraints) Performing minimization step: 233. Total energy = 27270.3088 kcal/mol (27253.1844 without restraints) Performing minimization step: 234. Total energy = 27221.6369 kcal/mol (27204.5521 without restraints) Performing minimization step: 235. Total energy = 27173.2888 kcal/mol (27156.2429 without restraints) Performing minimization step: 236. Total energy = 27125.2599 kcal/mol (27108.2524 without restraints) Performing minimization step: 237. Total energy = 27077.5449 kcal/mol (27060.5749 without restraints) Performing minimization step: 238. Total energy = 27030.1397 kcal/mol (27013.2072 without restraints) Performing minimization step: 239. Total energy = 26983.0402 kcal/mol (26966.1444 without restraints) Performing minimization step: 240. Total energy = 26936.2414 kcal/mol (26919.3819 without restraints) Performing minimization step: 241. Total energy = 26889.7390 kcal/mol (26872.9149 without restraints) Performing minimization step: 242. Total energy = 26843.5286 kcal/mol (26826.7401 without restraints) Performing minimization step: 243. Total energy = 26797.6068 kcal/mol (26780.8531 without restraints) Performing minimization step: 244. Total energy = 26751.9689 kcal/mol (26735.2494 without restraints) Performing minimization step: 245. Total energy = 26706.6113 kcal/mol (26689.9257 without restraints) Performing minimization step: 246. Total energy = 26661.5300 kcal/mol (26644.8778 without restraints) Performing minimization step: 247. Total energy = 26616.7210 kcal/mol (26600.1018 without restraints) Performing minimization step: 248. Total energy = 26572.1804 kcal/mol (26555.5936 without restraints) Performing minimization step: 249. Total energy = 26527.9046 kcal/mol (26511.3500 without restraints) Performing minimization step: 250. Total energy = 26483.8896 kcal/mol (26467.3666 without restraints) Performing minimization step: 251. Total energy = 26440.1324 kcal/mol (26423.6406 without restraints) Performing minimization step: 252. Total energy = 26396.6294 kcal/mol (26380.1685 without restraints) Performing minimization step: 253. Total energy = 26353.3770 kcal/mol (26336.9465 without restraints) Performing minimization step: 254. Total energy = 26310.3716 kcal/mol (26293.9711 without restraints) Performing minimization step: 255. Total energy = 26267.6102 kcal/mol (26251.2394 without restraints) Performing minimization step: 256. Total energy = 26225.0888 kcal/mol (26208.7473 without restraints) Performing minimization step: 257. Total energy = 26182.8052 kcal/mol (26166.4926 without restraints) Performing minimization step: 258. Total energy = 26140.7562 kcal/mol (26124.4720 without restraints) Performing minimization step: 259. Total energy = 26098.9381 kcal/mol (26082.6822 without restraints) Performing minimization step: 260. Total energy = 26057.3479 kcal/mol (26041.1199 without restraints) Performing minimization step: 261. Total energy = 26015.9831 kcal/mol (25999.7826 without restraints) Performing minimization step: 262. Total energy = 25974.8404 kcal/mol (25958.6671 without restraints) Performing minimization step: 263. Total energy = 25933.9172 kcal/mol (25917.7708 without restraints) Performing minimization step: 264. Total energy = 25893.2105 kcal/mol (25877.0905 without restraints) Performing minimization step: 265. Total energy = 25852.7181 kcal/mol (25836.6243 without restraints) Performing minimization step: 266. Total energy = 25812.4361 kcal/mol (25796.3681 without restraints) Performing minimization step: 267. Total energy = 25772.3623 kcal/mol (25756.3199 without restraints) Performing minimization step: 268. Total energy = 25732.4946 kcal/mol (25716.4775 without restraints) Performing minimization step: 269. Total energy = 25692.8299 kcal/mol (25676.8377 without restraints) Performing minimization step: 270. Total energy = 25653.3659 kcal/mol (25637.3984 without restraints) Performing minimization step: 271. Total energy = 25614.0999 kcal/mol (25598.1567 without restraints) Performing minimization step: 272. Total energy = 25575.0296 kcal/mol (25559.1106 without restraints) Performing minimization step: 273. Total energy = 25536.1529 kcal/mol (25520.2577 without restraints) Performing minimization step: 274. Total energy = 25497.4669 kcal/mol (25481.5952 without restraints) Performing minimization step: 275. Total energy = 25458.9696 kcal/mol (25443.1213 without restraints) Performing minimization step: 276. Total energy = 25420.6589 kcal/mol (25404.8336 without restraints) Performing minimization step: 277. Total energy = 25382.5318 kcal/mol (25366.7293 without restraints) Performing minimization step: 278. Total energy = 25344.5873 kcal/mol (25328.8075 without restraints) Performing minimization step: 279. Total energy = 25306.8226 kcal/mol (25291.0650 without restraints) Performing minimization step: 280. Total energy = 25269.2360 kcal/mol (25253.5004 without restraints) Performing minimization step: 281. Total energy = 25231.8244 kcal/mol (25216.1105 without restraints) Performing minimization step: 282. Total energy = 25194.5863 kcal/mol (25178.8941 without restraints) Performing minimization step: 283. Total energy = 25157.5195 kcal/mol (25141.8487 without restraints) Performing minimization step: 284. Total energy = 25120.6227 kcal/mol (25104.9728 without restraints) Performing minimization step: 285. Total energy = 25083.8933 kcal/mol (25068.2643 without restraints) Performing minimization step: 286. Total energy = 25047.3297 kcal/mol (25031.7214 without restraints) Performing minimization step: 287. Total energy = 25010.9300 kcal/mol (24995.3421 without restraints) Performing minimization step: 288. Total energy = 24974.6923 kcal/mol (24959.1247 without restraints) Performing minimization step: 289. Total energy = 24938.6147 kcal/mol (24923.0671 without restraints) Performing minimization step: 290. Total energy = 24902.6959 kcal/mol (24887.1679 without restraints) Performing minimization step: 291. Total energy = 24866.9337 kcal/mol (24851.4256 without restraints) Performing minimization step: 292. Total energy = 24831.3264 kcal/mol (24815.8378 without restraints) Performing minimization step: 293. Total energy = 24795.8729 kcal/mol (24780.4035 without restraints) Performing minimization step: 294. Total energy = 24760.5705 kcal/mol (24745.1201 without restraints) Performing minimization step: 295. Total energy = 24725.4170 kcal/mol (24709.9854 without restraints) Performing minimization step: 296. Total energy = 24690.4127 kcal/mol (24674.9998 without restraints) Performing minimization step: 297. Total energy = 24655.5557 kcal/mol (24640.1613 without restraints) Performing minimization step: 298. Total energy = 24620.8441 kcal/mol (24605.4680 without restraints) Performing minimization step: 299. Total energy = 24586.2760 kcal/mol (24570.9180 without restraints) Performing minimization step: 300. Total energy = 24551.8497 kcal/mol (24536.5097 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 301. Total energy = 24517.5653 kcal/mol (24502.2433 without restraints) Performing minimization step: 302. Total energy = 24483.4201 kcal/mol (24468.1155 without restraints) Performing minimization step: 303. Total energy = 24449.4125 kcal/mol (24434.1254 without restraints) Performing minimization step: 304. Total energy = 24415.5410 kcal/mol (24400.2713 without restraints) Performing minimization step: 305. Total energy = 24381.8052 kcal/mol (24366.5526 without restraints) Performing minimization step: 306. Total energy = 24348.2028 kcal/mol (24332.9673 without restraints) Performing minimization step: 307. Total energy = 24314.7326 kcal/mol (24299.5138 without restraints) Performing minimization step: 308. Total energy = 24281.3935 kcal/mol (24266.1914 without restraints) Performing minimization step: 309. Total energy = 24248.1840 kcal/mol (24232.9985 without restraints) Performing minimization step: 310. Total energy = 24215.1035 kcal/mol (24199.9344 without restraints) Performing minimization step: 311. Total energy = 24182.1501 kcal/mol (24166.9973 without restraints) Performing minimization step: 312. Total energy = 24149.3224 kcal/mol (24134.1855 without restraints) Performing minimization step: 313. Total energy = 24116.6202 kcal/mol (24101.4994 without restraints) Performing minimization step: 314. Total energy = 24084.0415 kcal/mol (24068.9366 without restraints) Performing minimization step: 315. Total energy = 24051.5853 kcal/mol (24036.4961 without restraints) Performing minimization step: 316. Total energy = 24019.2505 kcal/mol (24004.1770 without restraints) Performing minimization step: 317. Total energy = 23987.0360 kcal/mol (23971.9779 without restraints) Performing minimization step: 318. Total energy = 23954.9407 kcal/mol (23939.8979 without restraints) Performing minimization step: 319. Total energy = 23922.9628 kcal/mol (23907.9353 without restraints) Performing minimization step: 320. Total energy = 23891.1022 kcal/mol (23876.0897 without restraints) Performing minimization step: 321. Total energy = 23859.3571 kcal/mol (23844.3595 without restraints) Performing minimization step: 322. Total energy = 23827.7275 kcal/mol (23812.7448 without restraints) Performing minimization step: 323. Total energy = 23796.2116 kcal/mol (23781.2437 without restraints) Performing minimization step: 324. Total energy = 23764.8083 kcal/mol (23749.8549 without restraints) Performing minimization step: 325. Total energy = 23733.5167 kcal/mol (23718.5779 without restraints) Performing minimization step: 326. Total energy = 23702.3363 kcal/mol (23687.4118 without restraints) Performing minimization step: 327. Total energy = 23671.2658 kcal/mol (23656.3556 without restraints) Performing minimization step: 328. Total energy = 23640.3045 kcal/mol (23625.4086 without restraints) Performing minimization step: 329. Total energy = 23609.4510 kcal/mol (23594.5690 without restraints) Performing minimization step: 330. Total energy = 23578.7043 kcal/mol (23563.8363 without restraints) Performing minimization step: 331. Total energy = 23548.0632 kcal/mol (23533.2091 without restraints) Performing minimization step: 332. Total energy = 23517.5281 kcal/mol (23502.6876 without restraints) Performing minimization step: 333. Total energy = 23487.0971 kcal/mol (23472.2704 without restraints) Performing minimization step: 334. Total energy = 23456.7696 kcal/mol (23441.9564 without restraints) Performing minimization step: 335. Total energy = 23426.5453 kcal/mol (23411.7455 without restraints) Performing minimization step: 336. Total energy = 23396.4219 kcal/mol (23381.6353 without restraints) Performing minimization step: 337. Total energy = 23366.3999 kcal/mol (23351.6268 without restraints) Performing minimization step: 338. Total energy = 23336.4781 kcal/mol (23321.7180 without restraints) Performing minimization step: 339. Total energy = 23306.6557 kcal/mol (23291.9088 without restraints) Performing minimization step: 340. Total energy = 23276.9316 kcal/mol (23262.1977 without restraints) Performing minimization step: 341. Total energy = 23247.3057 kcal/mol (23232.5847 without restraints) Performing minimization step: 342. Total energy = 23217.7768 kcal/mol (23203.0686 without restraints) Performing minimization step: 343. Total energy = 23188.3441 kcal/mol (23173.6486 without restraints) Performing minimization step: 344. Total energy = 23159.0067 kcal/mol (23144.3239 without restraints) Performing minimization step: 345. Total energy = 23129.7643 kcal/mol (23115.0942 without restraints) Performing minimization step: 346. Total energy = 23100.6164 kcal/mol (23085.9587 without restraints) Performing minimization step: 347. Total energy = 23071.5615 kcal/mol (23056.9162 without restraints) Performing minimization step: 348. Total energy = 23042.5995 kcal/mol (23027.9665 without restraints) Performing minimization step: 349. Total energy = 23013.7291 kcal/mol (22999.1083 without restraints) Performing minimization step: 350. Total energy = 22984.9504 kcal/mol (22970.3419 without restraints) Performing minimization step: 351. Total energy = 22956.2622 kcal/mol (22941.6657 without restraints) Performing minimization step: 352. Total energy = 22927.6635 kcal/mol (22913.0788 without restraints) Performing minimization step: 353. Total energy = 22899.1544 kcal/mol (22884.5818 without restraints) Performing minimization step: 354. Total energy = 22870.7340 kcal/mol (22856.1733 without restraints) Performing minimization step: 355. Total energy = 22842.4016 kcal/mol (22827.8527 without restraints) Performing minimization step: 356. Total energy = 22814.1566 kcal/mol (22799.6194 without restraints) Performing minimization step: 357. Total energy = 22785.9984 kcal/mol (22771.4728 without restraints) Performing minimization step: 358. Total energy = 22757.9270 kcal/mol (22743.4130 without restraints) Performing minimization step: 359. Total energy = 22729.9405 kcal/mol (22715.4381 without restraints) Performing minimization step: 360. Total energy = 22702.0391 kcal/mol (22687.5482 without restraints) Performing minimization step: 361. Total energy = 22674.2222 kcal/mol (22659.7426 without restraints) Performing minimization step: 362. Total energy = 22646.4888 kcal/mol (22632.0204 without restraints) Performing minimization step: 363. Total energy = 22618.8386 kcal/mol (22604.3814 without restraints) Performing minimization step: 364. Total energy = 22591.2709 kcal/mol (22576.8250 without restraints) Performing minimization step: 365. Total energy = 22563.7858 kcal/mol (22549.3511 without restraints) Performing minimization step: 366. Total energy = 22536.3820 kcal/mol (22521.9583 without restraints) Performing minimization step: 367. Total energy = 22509.0596 kcal/mol (22494.6468 without restraints) Performing minimization step: 368. Total energy = 22481.8177 kcal/mol (22467.4160 without restraints) Performing minimization step: 369. Total energy = 22454.6560 kcal/mol (22440.2651 without restraints) Performing minimization step: 370. Total energy = 22427.5740 kcal/mol (22413.1940 without restraints) Performing minimization step: 371. Total energy = 22400.5700 kcal/mol (22386.2006 without restraints) Performing minimization step: 372. Total energy = 22373.6444 kcal/mol (22359.2859 without restraints) Performing minimization step: 373. Total energy = 22346.7971 kcal/mol (22332.4493 without restraints) Performing minimization step: 374. Total energy = 22320.0277 kcal/mol (22305.6906 without restraints) Performing minimization step: 375. Total energy = 22293.3352 kcal/mol (22279.0085 without restraints) Performing minimization step: 376. Total energy = 22266.7194 kcal/mol (22252.4032 without restraints) Performing minimization step: 377. Total energy = 22240.1797 kcal/mol (22225.8740 without restraints) Performing minimization step: 378. Total energy = 22213.7154 kcal/mol (22199.4201 without restraints) Performing minimization step: 379. Total energy = 22187.3255 kcal/mol (22173.0405 without restraints) Performing minimization step: 380. Total energy = 22161.0113 kcal/mol (22146.7367 without restraints) Performing minimization step: 381. Total energy = 22134.7711 kcal/mol (22120.5067 without restraints) Performing minimization step: 382. Total energy = 22108.6045 kcal/mol (22094.3502 without restraints) Performing minimization step: 383. Total energy = 22082.5117 kcal/mol (22068.2677 without restraints) Performing minimization step: 384. Total energy = 22056.4918 kcal/mol (22042.2578 without restraints) Performing minimization step: 385. Total energy = 22030.5441 kcal/mol (22016.3201 without restraints) Performing minimization step: 386. Total energy = 22004.6685 kcal/mol (21990.4544 without restraints) Performing minimization step: 387. Total energy = 21978.8643 kcal/mol (21964.6603 without restraints) Performing minimization step: 388. Total energy = 21953.1316 kcal/mol (21938.9375 without restraints) Performing minimization step: 389. Total energy = 21927.4700 kcal/mol (21913.2857 without restraints) Performing minimization step: 390. Total energy = 21901.8791 kcal/mol (21887.7048 without restraints) Performing minimization step: 391. Total energy = 21876.3580 kcal/mol (21862.1934 without restraints) Performing minimization step: 392. Total energy = 21850.9065 kcal/mol (21836.7515 without restraints) Performing minimization step: 393. Total energy = 21825.5245 kcal/mol (21811.3792 without restraints) Performing minimization step: 394. Total energy = 21800.2112 kcal/mol (21786.0758 without restraints) Performing minimization step: 395. Total energy = 21774.9666 kcal/mol (21760.8406 without restraints) Performing minimization step: 396. Total energy = 21749.7901 kcal/mol (21735.6737 without restraints) Performing minimization step: 397. Total energy = 21724.6813 kcal/mol (21710.5744 without restraints) Performing minimization step: 398. Total energy = 21699.6401 kcal/mol (21685.5427 without restraints) Performing minimization step: 399. Total energy = 21674.6659 kcal/mol (21660.5779 without restraints) Performing minimization step: 400. Total energy = 21649.7588 kcal/mol (21635.6802 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 401. Total energy = 21624.9177 kcal/mol (21610.8485 without restraints) Performing minimization step: 402. Total energy = 21600.1429 kcal/mol (21586.0831 without restraints) Performing minimization step: 403. Total energy = 21575.4340 kcal/mol (21561.3835 without restraints) Performing minimization step: 404. Total energy = 21550.7901 kcal/mol (21536.7487 without restraints) Performing minimization step: 405. Total energy = 21526.2110 kcal/mol (21512.1788 without restraints) Performing minimization step: 406. Total energy = 21501.6971 kcal/mol (21487.6741 without restraints) Performing minimization step: 407. Total energy = 21477.2469 kcal/mol (21463.2332 without restraints) Performing minimization step: 408. Total energy = 21452.8610 kcal/mol (21438.8562 without restraints) Performing minimization step: 409. Total energy = 21428.5388 kcal/mol (21414.5431 without restraints) Performing minimization step: 410. Total energy = 21404.2799 kcal/mol (21390.2932 without restraints) Performing minimization step: 411. Total energy = 21380.0842 kcal/mol (21366.1066 without restraints) Performing minimization step: 412. Total energy = 21355.9513 kcal/mol (21341.9824 without restraints) Performing minimization step: 413. Total energy = 21331.8808 kcal/mol (21317.9210 without restraints) Performing minimization step: 414. Total energy = 21307.8726 kcal/mol (21293.9216 without restraints) Performing minimization step: 415. Total energy = 21283.9262 kcal/mol (21269.9842 without restraints) Performing minimization step: 416. Total energy = 21260.0417 kcal/mol (21246.1085 without restraints) Performing minimization step: 417. Total energy = 21236.2179 kcal/mol (21222.2934 without restraints) Performing minimization step: 418. Total energy = 21212.4558 kcal/mol (21198.5399 without restraints) Performing minimization step: 419. Total energy = 21188.7539 kcal/mol (21174.8470 without restraints) Performing minimization step: 420. Total energy = 21165.1123 kcal/mol (21151.2140 without restraints) Performing minimization step: 421. Total energy = 21141.5310 kcal/mol (21127.6413 without restraints) Performing minimization step: 422. Total energy = 21118.0095 kcal/mol (21104.1285 without restraints) Performing minimization step: 423. Total energy = 21094.5480 kcal/mol (21080.6757 without restraints) Performing minimization step: 424. Total energy = 21071.1454 kcal/mol (21057.2817 without restraints) Performing minimization step: 425. Total energy = 21047.8022 kcal/mol (21033.9469 without restraints) Performing minimization step: 426. Total energy = 21024.5177 kcal/mol (21010.6710 without restraints) Performing minimization step: 427. Total energy = 21001.2919 kcal/mol (20987.4537 without restraints) Performing minimization step: 428. Total energy = 20978.1247 kcal/mol (20964.2951 without restraints) Performing minimization step: 429. Total energy = 20955.0153 kcal/mol (20941.1940 without restraints) Performing minimization step: 430. Total energy = 20931.9642 kcal/mol (20918.1513 without restraints) Performing minimization step: 431. Total energy = 20908.9698 kcal/mol (20895.1652 without restraints) Performing minimization step: 432. Total energy = 20886.0325 kcal/mol (20872.2362 without restraints) Performing minimization step: 433. Total energy = 20863.1523 kcal/mol (20849.3644 without restraints) Performing minimization step: 434. Total energy = 20840.3294 kcal/mol (20826.5499 without restraints) Performing minimization step: 435. Total energy = 20817.5629 kcal/mol (20803.7915 without restraints) Performing minimization step: 436. Total energy = 20794.8523 kcal/mol (20781.0891 without restraints) Performing minimization step: 437. Total energy = 20772.1979 kcal/mol (20758.4430 without restraints) Performing minimization step: 438. Total energy = 20749.5991 kcal/mol (20735.8520 without restraints) Performing minimization step: 439. Total energy = 20727.0557 kcal/mol (20713.3171 without restraints) Performing minimization step: 440. Total energy = 20704.5680 kcal/mol (20690.8375 without restraints) Performing minimization step: 441. Total energy = 20682.1357 kcal/mol (20668.4133 without restraints) Performing minimization step: 442. Total energy = 20659.7583 kcal/mol (20646.0440 without restraints) Performing minimization step: 443. Total energy = 20637.4349 kcal/mol (20623.7286 without restraints) Performing minimization step: 444. Total energy = 20615.1657 kcal/mol (20601.4675 without restraints) Performing minimization step: 445. Total energy = 20592.9513 kcal/mol (20579.2611 without restraints) Performing minimization step: 446. Total energy = 20570.7912 kcal/mol (20557.1089 without restraints) Performing minimization step: 447. Total energy = 20548.6844 kcal/mol (20535.0101 without restraints) Performing minimization step: 448. Total energy = 20526.6318 kcal/mol (20512.9654 without restraints) Performing minimization step: 449. Total energy = 20504.6321 kcal/mol (20490.9736 without restraints) Performing minimization step: 450. Total energy = 20482.6855 kcal/mol (20469.0350 without restraints) Performing minimization step: 451. Total energy = 20460.7919 kcal/mol (20447.1492 without restraints) Performing minimization step: 452. Total energy = 20438.9509 kcal/mol (20425.3161 without restraints) Performing minimization step: 453. Total energy = 20417.1625 kcal/mol (20403.5355 without restraints) Performing minimization step: 454. Total energy = 20395.4262 kcal/mol (20381.8070 without restraints) Performing minimization step: 455. Total energy = 20373.7423 kcal/mol (20360.1308 without restraints) Performing minimization step: 456. Total energy = 20352.1099 kcal/mol (20338.5061 without restraints) Performing minimization step: 457. Total energy = 20330.5295 kcal/mol (20316.9336 without restraints) Performing minimization step: 458. Total energy = 20309.0010 kcal/mol (20295.4127 without restraints) Performing minimization step: 459. Total energy = 20287.5235 kcal/mol (20273.9431 without restraints) Performing minimization step: 460. Total energy = 20266.0975 kcal/mol (20252.5245 without restraints) Performing minimization step: 461. Total energy = 20244.7218 kcal/mol (20231.1567 without restraints) Performing minimization step: 462. Total energy = 20223.3972 kcal/mol (20209.8395 without restraints) Performing minimization step: 463. Total energy = 20202.1234 kcal/mol (20188.5735 without restraints) Performing minimization step: 464. Total energy = 20180.8998 kcal/mol (20167.3573 without restraints) Performing minimization step: 465. Total energy = 20159.7259 kcal/mol (20146.1909 without restraints) Performing minimization step: 466. Total energy = 20138.6021 kcal/mol (20125.0747 without restraints) Performing minimization step: 467. Total energy = 20117.5281 kcal/mol (20104.0083 without restraints) Performing minimization step: 468. Total energy = 20096.5034 kcal/mol (20082.9909 without restraints) Performing minimization step: 469. Total energy = 20075.5283 kcal/mol (20062.0234 without restraints) Performing minimization step: 470. Total energy = 20054.6026 kcal/mol (20041.1052 without restraints) Performing minimization step: 471. Total energy = 20033.7257 kcal/mol (20020.2353 without restraints) Performing minimization step: 472. Total energy = 20012.8978 kcal/mol (19999.4152 without restraints) Performing minimization step: 473. Total energy = 19992.1189 kcal/mol (19978.6439 without restraints) Performing minimization step: 474. Total energy = 19971.3883 kcal/mol (19957.9204 without restraints) Performing minimization step: 475. Total energy = 19950.7062 kcal/mol (19937.2457 without restraints) Performing minimization step: 476. Total energy = 19930.0717 kcal/mol (19916.6185 without restraints) Performing minimization step: 477. Total energy = 19909.4859 kcal/mol (19896.0401 without restraints) Performing minimization step: 478. Total energy = 19888.9479 kcal/mol (19875.5093 without restraints) Performing minimization step: 479. Total energy = 19868.4576 kcal/mol (19855.0264 without restraints) Performing minimization step: 480. Total energy = 19848.0153 kcal/mol (19834.5913 without restraints) Performing minimization step: 481. Total energy = 19827.6202 kcal/mol (19814.2034 without restraints) Performing minimization step: 482. Total energy = 19807.2720 kcal/mol (19793.8625 without restraints) Performing minimization step: 483. Total energy = 19786.9710 kcal/mol (19773.5686 without restraints) Performing minimization step: 484. Total energy = 19766.7166 kcal/mol (19753.3216 without restraints) Performing minimization step: 485. Total energy = 19746.5087 kcal/mol (19733.1208 without restraints) Performing minimization step: 486. Total energy = 19726.3476 kcal/mol (19712.9669 without restraints) Performing minimization step: 487. Total energy = 19706.2334 kcal/mol (19692.8598 without restraints) Performing minimization step: 488. Total energy = 19686.1651 kcal/mol (19672.7986 without restraints) Performing minimization step: 489. Total energy = 19666.1427 kcal/mol (19652.7833 without restraints) Performing minimization step: 490. Total energy = 19646.1663 kcal/mol (19632.8140 without restraints) Performing minimization step: 491. Total energy = 19626.2357 kcal/mol (19612.8904 without restraints) Performing minimization step: 492. Total energy = 19606.3507 kcal/mol (19593.0126 without restraints) Performing minimization step: 493. Total energy = 19586.5112 kcal/mol (19573.1800 without restraints) Performing minimization step: 494. Total energy = 19566.7167 kcal/mol (19553.3925 without restraints) Performing minimization step: 495. Total energy = 19546.9669 kcal/mol (19533.6497 without restraints) Performing minimization step: 496. Total energy = 19527.2635 kcal/mol (19513.9534 without restraints) Performing minimization step: 497. Total energy = 19507.6044 kcal/mol (19494.3013 without restraints) Performing minimization step: 498. Total energy = 19487.9896 kcal/mol (19474.6933 without restraints) Performing minimization step: 499. Total energy = 19468.4195 kcal/mol (19455.1302 without restraints) Performing minimization step: 500. Total energy = 19448.8939 kcal/mol (19435.6115 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 501. Total energy = 19429.4128 kcal/mol (19416.1373 without restraints) Performing minimization step: 502. Total energy = 19409.9761 kcal/mol (19396.7075 without restraints) Performing minimization step: 503. Total energy = 19390.5831 kcal/mol (19377.3213 without restraints) Performing minimization step: 504. Total energy = 19371.2339 kcal/mol (19357.9790 without restraints) Performing minimization step: 505. Total energy = 19351.9282 kcal/mol (19338.6801 without restraints) Performing minimization step: 506. Total energy = 19332.6661 kcal/mol (19319.4249 without restraints) Performing minimization step: 507. Total energy = 19313.4474 kcal/mol (19300.2130 without restraints) Performing minimization step: 508. Total energy = 19294.2720 kcal/mol (19281.0445 without restraints) Performing minimization step: 509. Total energy = 19275.1400 kcal/mol (19261.9192 without restraints) Performing minimization step: 510. Total energy = 19256.0508 kcal/mol (19242.8367 without restraints) Performing minimization step: 511. Total energy = 19237.0045 kcal/mol (19223.7973 without restraints) Performing minimization step: 512. Total energy = 19218.0010 kcal/mol (19204.8004 without restraints) Performing minimization step: 513. Total energy = 19199.0401 kcal/mol (19185.8463 without restraints) Performing minimization step: 514. Total energy = 19180.1216 kcal/mol (19166.9345 without restraints) Performing minimization step: 515. Total energy = 19161.2455 kcal/mol (19148.0652 without restraints) Performing minimization step: 516. Total energy = 19142.4113 kcal/mol (19129.2375 without restraints) Performing minimization step: 517. Total energy = 19123.6193 kcal/mol (19110.4522 without restraints) Performing minimization step: 518. Total energy = 19104.8688 kcal/mol (19091.7082 without restraints) Performing minimization step: 519. Total energy = 19086.1605 kcal/mol (19073.0068 without restraints) Performing minimization step: 520. Total energy = 19067.4941 kcal/mol (19054.3469 without restraints) Performing minimization step: 521. Total energy = 19048.8695 kcal/mol (19035.7289 without restraints) Performing minimization step: 522. Total energy = 19030.2854 kcal/mol (19017.1513 without restraints) Performing minimization step: 523. Total energy = 19011.7430 kcal/mol (18998.6155 without restraints) Performing minimization step: 524. Total energy = 18993.2423 kcal/mol (18980.1214 without restraints) Performing minimization step: 525. Total energy = 18974.7819 kcal/mol (18961.6675 without restraints) Performing minimization step: 526. Total energy = 18956.3618 kcal/mol (18943.2539 without restraints) Performing minimization step: 527. Total energy = 18937.9835 kcal/mol (18924.8822 without restraints) Performing minimization step: 528. Total energy = 18919.6461 kcal/mol (18906.5512 without restraints) Performing minimization step: 529. Total energy = 18901.3488 kcal/mol (18888.2605 without restraints) Performing minimization step: 530. Total energy = 18883.0918 kcal/mol (18870.0100 without restraints) Performing minimization step: 531. Total energy = 18864.8750 kcal/mol (18851.7997 without restraints) Performing minimization step: 532. Total energy = 18846.6982 kcal/mol (18833.6293 without restraints) Performing minimization step: 533. Total energy = 18828.5621 kcal/mol (18815.4997 without restraints) Performing minimization step: 534. Total energy = 18810.4662 kcal/mol (18797.4101 without restraints) Performing minimization step: 535. Total energy = 18792.4093 kcal/mol (18779.3597 without restraints) Performing minimization step: 536. Total energy = 18774.3922 kcal/mol (18761.3490 without restraints) Performing minimization step: 537. Total energy = 18756.4149 kcal/mol (18743.3780 without restraints) Performing minimization step: 538. Total energy = 18738.4770 kcal/mol (18725.4467 without restraints) Performing minimization step: 539. Total energy = 18720.5785 kcal/mol (18707.5544 without restraints) Performing minimization step: 540. Total energy = 18702.7187 kcal/mol (18689.7008 without restraints) Performing minimization step: 541. Total energy = 18684.8984 kcal/mol (18671.8870 without restraints) Performing minimization step: 542. Total energy = 18667.1169 kcal/mol (18654.1119 without restraints) Performing minimization step: 543. Total energy = 18649.3743 kcal/mol (18636.3755 without restraints) Performing minimization step: 544. Total energy = 18631.6698 kcal/mol (18618.6772 without restraints) Performing minimization step: 545. Total energy = 18614.0045 kcal/mol (18601.0183 without restraints) Performing minimization step: 546. Total energy = 18596.3773 kcal/mol (18583.3973 without restraints) Performing minimization step: 547. Total energy = 18578.7890 kcal/mol (18565.8153 without restraints) Performing minimization step: 548. Total energy = 18561.2392 kcal/mol (18548.2718 without restraints) Performing minimization step: 549. Total energy = 18543.7275 kcal/mol (18530.7662 without restraints) Performing minimization step: 550. Total energy = 18526.2537 kcal/mol (18513.2987 without restraints) Performing minimization step: 551. Total energy = 18508.8179 kcal/mol (18495.8691 without restraints) Performing minimization step: 552. Total energy = 18491.4199 kcal/mol (18478.4773 without restraints) Performing minimization step: 553. Total energy = 18474.0595 kcal/mol (18461.1230 without restraints) Performing minimization step: 554. Total energy = 18456.7365 kcal/mol (18443.8062 without restraints) Performing minimization step: 555. Total energy = 18439.4515 kcal/mol (18426.5274 without restraints) Performing minimization step: 556. Total energy = 18422.2037 kcal/mol (18409.2856 without restraints) Performing minimization step: 557. Total energy = 18404.9935 kcal/mol (18392.0816 without restraints) Performing minimization step: 558. Total energy = 18387.8200 kcal/mol (18374.9142 without restraints) Performing minimization step: 559. Total energy = 18370.6835 kcal/mol (18357.7839 without restraints) Performing minimization step: 560. Total energy = 18353.5841 kcal/mol (18340.6906 without restraints) Performing minimization step: 561. Total energy = 18336.5220 kcal/mol (18323.6346 without restraints) Performing minimization step: 562. Total energy = 18319.4960 kcal/mol (18306.6146 without restraints) Performing minimization step: 563. Total energy = 18302.5068 kcal/mol (18289.6315 without restraints) Performing minimization step: 564. Total energy = 18285.5541 kcal/mol (18272.6847 without restraints) Performing minimization step: 565. Total energy = 18268.6376 kcal/mol (18255.7744 without restraints) Performing minimization step: 566. Total energy = 18251.7576 kcal/mol (18238.9004 without restraints) Performing minimization step: 567. Total energy = 18234.9139 kcal/mol (18222.0626 without restraints) Performing minimization step: 568. Total energy = 18218.1059 kcal/mol (18205.2608 without restraints) Performing minimization step: 569. Total energy = 18201.3343 kcal/mol (18188.4951 without restraints) Performing minimization step: 570. Total energy = 18184.5986 kcal/mol (18171.7654 without restraints) Performing minimization step: 571. Total energy = 18167.8986 kcal/mol (18155.0713 without restraints) Performing minimization step: 572. Total energy = 18151.2343 kcal/mol (18138.4130 without restraints) Performing minimization step: 573. Total energy = 18134.6055 kcal/mol (18121.7901 without restraints) Performing minimization step: 574. Total energy = 18118.0124 kcal/mol (18105.2028 without restraints) Performing minimization step: 575. Total energy = 18101.4543 kcal/mol (18088.6507 without restraints) Performing minimization step: 576. Total energy = 18084.9318 kcal/mol (18072.1342 without restraints) Performing minimization step: 577. Total energy = 18068.4446 kcal/mol (18055.6529 without restraints) Performing minimization step: 578. Total energy = 18051.9920 kcal/mol (18039.2062 without restraints) Performing minimization step: 579. Total energy = 18035.5747 kcal/mol (18022.7949 without restraints) Performing minimization step: 580. Total energy = 18019.1925 kcal/mol (18006.4184 without restraints) Performing minimization step: 581. Total energy = 18002.8448 kcal/mol (17990.0766 without restraints) Performing minimization step: 582. Total energy = 17986.5317 kcal/mol (17973.7693 without restraints) Performing minimization step: 583. Total energy = 17970.2531 kcal/mol (17957.4965 without restraints) Performing minimization step: 584. Total energy = 17954.0087 kcal/mol (17941.2579 without restraints) Performing minimization step: 585. Total energy = 17937.7986 kcal/mol (17925.0536 without restraints) Performing minimization step: 586. Total energy = 17921.6223 kcal/mol (17908.8830 without restraints) Performing minimization step: 587. Total energy = 17905.4808 kcal/mol (17892.7475 without restraints) Performing minimization step: 588. Total energy = 17889.3738 kcal/mol (17876.6463 without restraints) Performing minimization step: 589. Total energy = 17873.3005 kcal/mol (17860.5787 without restraints) Performing minimization step: 590. Total energy = 17857.2608 kcal/mol (17844.5447 without restraints) Performing minimization step: 591. Total energy = 17841.2552 kcal/mol (17828.5449 without restraints) Performing minimization step: 592. Total energy = 17825.2834 kcal/mol (17812.5788 without restraints) Performing minimization step: 593. Total energy = 17809.3451 kcal/mol (17796.6462 without restraints) Performing minimization step: 594. Total energy = 17793.4402 kcal/mol (17780.7469 without restraints) Performing minimization step: 595. Total energy = 17777.5683 kcal/mol (17764.8808 without restraints) Performing minimization step: 596. Total energy = 17761.7304 kcal/mol (17749.0486 without restraints) Performing minimization step: 597. Total energy = 17745.9251 kcal/mol (17733.2489 without restraints) Performing minimization step: 598. Total energy = 17730.1531 kcal/mol (17717.4826 without restraints) Performing minimization step: 599. Total energy = 17714.4136 kcal/mol (17701.7488 without restraints) Performing minimization step: 600. Total energy = 17698.7073 kcal/mol (17686.0481 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 601. Total energy = 17683.0344 kcal/mol (17670.3809 without restraints) Performing minimization step: 602. Total energy = 17667.3939 kcal/mol (17654.7460 without restraints) Performing minimization step: 603. Total energy = 17651.7858 kcal/mol (17639.1434 without restraints) Performing minimization step: 604. Total energy = 17636.2102 kcal/mol (17623.5735 without restraints) Performing minimization step: 605. Total energy = 17620.6674 kcal/mol (17608.0363 without restraints) Performing minimization step: 606. Total energy = 17605.1566 kcal/mol (17592.5310 without restraints) Performing minimization step: 607. Total energy = 17589.6782 kcal/mol (17577.0583 without restraints) Performing minimization step: 608. Total energy = 17574.2321 kcal/mol (17561.6177 without restraints) Performing minimization step: 609. Total energy = 17558.8177 kcal/mol (17546.2089 without restraints) Performing minimization step: 610. Total energy = 17543.4350 kcal/mol (17530.8317 without restraints) Performing minimization step: 611. Total energy = 17528.0848 kcal/mol (17515.4870 without restraints) Performing minimization step: 612. Total energy = 17512.7665 kcal/mol (17500.1745 without restraints) Performing minimization step: 613. Total energy = 17497.4800 kcal/mol (17484.8933 without restraints) Performing minimization step: 614. Total energy = 17482.2250 kcal/mol (17469.6438 without restraints) Performing minimization step: 615. Total energy = 17467.0017 kcal/mol (17454.4260 without restraints) Performing minimization step: 616. Total energy = 17451.8098 kcal/mol (17439.2395 without restraints) Performing minimization step: 617. Total energy = 17436.6490 kcal/mol (17424.0842 without restraints) Performing minimization step: 618. Total energy = 17421.5193 kcal/mol (17408.9600 without restraints) Performing minimization step: 619. Total energy = 17406.4212 kcal/mol (17393.8675 without restraints) Performing minimization step: 620. Total energy = 17391.3535 kcal/mol (17378.8050 without restraints) Performing minimization step: 621. Total energy = 17376.3171 kcal/mol (17363.7739 without restraints) Performing minimization step: 622. Total energy = 17361.3114 kcal/mol (17348.7738 without restraints) Performing minimization step: 623. Total energy = 17346.3366 kcal/mol (17333.8044 without restraints) Performing minimization step: 624. Total energy = 17331.3928 kcal/mol (17318.8659 without restraints) Performing minimization step: 625. Total energy = 17316.4791 kcal/mol (17303.9577 without restraints) Performing minimization step: 626. Total energy = 17301.5965 kcal/mol (17289.0804 without restraints) Performing minimization step: 627. Total energy = 17286.7444 kcal/mol (17274.2337 without restraints) Performing minimization step: 628. Total energy = 17271.9226 kcal/mol (17259.4172 without restraints) Performing minimization step: 629. Total energy = 17257.1311 kcal/mol (17244.6313 without restraints) Performing minimization step: 630. Total energy = 17242.3699 kcal/mol (17229.8752 without restraints) Performing minimization step: 631. Total energy = 17227.6390 kcal/mol (17215.1498 without restraints) Performing minimization step: 632. Total energy = 17212.9378 kcal/mol (17200.4539 without restraints) Performing minimization step: 633. Total energy = 17198.2666 kcal/mol (17185.7879 without restraints) Performing minimization step: 634. Total energy = 17183.6255 kcal/mol (17171.1521 without restraints) Performing minimization step: 635. Total energy = 17169.0142 kcal/mol (17156.5461 without restraints) Performing minimization step: 636. Total energy = 17154.4319 kcal/mol (17141.9692 without restraints) Performing minimization step: 637. Total energy = 17139.8794 kcal/mol (17127.4219 without restraints) Performing minimization step: 638. Total energy = 17125.3570 kcal/mol (17112.9047 without restraints) Performing minimization step: 639. Total energy = 17110.8631 kcal/mol (17098.4161 without restraints) Performing minimization step: 640. Total energy = 17096.3989 kcal/mol (17083.9572 without restraints) Performing minimization step: 641. Total energy = 17081.9646 kcal/mol (17069.5281 without restraints) Performing minimization step: 642. Total energy = 17067.5591 kcal/mol (17055.1277 without restraints) Performing minimization step: 643. Total energy = 17053.1824 kcal/mol (17040.7563 without restraints) Performing minimization step: 644. Total energy = 17038.8348 kcal/mol (17026.4140 without restraints) Performing minimization step: 645. Total energy = 17024.5162 kcal/mol (17012.1006 without restraints) Performing minimization step: 646. Total energy = 17010.2264 kcal/mol (16997.8159 without restraints) Performing minimization step: 647. Total energy = 16995.9661 kcal/mol (16983.5609 without restraints) Performing minimization step: 648. Total energy = 16981.7340 kcal/mol (16969.3338 without restraints) Performing minimization step: 649. Total energy = 16967.5299 kcal/mol (16955.1348 without restraints) Performing minimization step: 650. Total energy = 16953.3546 kcal/mol (16940.9648 without restraints) Performing minimization step: 651. Total energy = 16939.2079 kcal/mol (16926.8232 without restraints) Performing minimization step: 652. Total energy = 16925.0892 kcal/mol (16912.7094 without restraints) Performing minimization step: 653. Total energy = 16910.9987 kcal/mol (16898.6243 without restraints) Performing minimization step: 654. Total energy = 16896.9371 kcal/mol (16884.5678 without restraints) Performing minimization step: 655. Total energy = 16882.9031 kcal/mol (16870.5389 without restraints) Performing minimization step: 656. Total energy = 16868.8969 kcal/mol (16856.5378 without restraints) Performing minimization step: 657. Total energy = 16854.9194 kcal/mol (16842.5654 without restraints) Performing minimization step: 658. Total energy = 16840.9691 kcal/mol (16828.6201 without restraints) Performing minimization step: 659. Total energy = 16827.0468 kcal/mol (16814.7028 without restraints) Performing minimization step: 660. Total energy = 16813.1518 kcal/mol (16800.8129 without restraints) Performing minimization step: 661. Total energy = 16799.2852 kcal/mol (16786.9515 without restraints) Performing minimization step: 662. Total energy = 16785.4460 kcal/mol (16773.1172 without restraints) Performing minimization step: 663. Total energy = 16771.6340 kcal/mol (16759.3102 without restraints) Performing minimization step: 664. Total energy = 16757.8493 kcal/mol (16745.5306 without restraints) Performing minimization step: 665. Total energy = 16744.0916 kcal/mol (16731.7779 without restraints) Performing minimization step: 666. Total energy = 16730.3616 kcal/mol (16718.0527 without restraints) Performing minimization step: 667. Total energy = 16716.6589 kcal/mol (16704.3551 without restraints) Performing minimization step: 668. Total energy = 16702.9829 kcal/mol (16690.6842 without restraints) Performing minimization step: 669. Total energy = 16689.3340 kcal/mol (16677.0402 without restraints) Performing minimization step: 670. Total energy = 16675.7120 kcal/mol (16663.4235 without restraints) Performing minimization step: 671. Total energy = 16662.1167 kcal/mol (16649.8329 without restraints) Performing minimization step: 672. Total energy = 16648.5489 kcal/mol (16636.2700 without restraints) Performing minimization step: 673. Total energy = 16635.0074 kcal/mol (16622.7334 without restraints) Performing minimization step: 674. Total energy = 16621.4917 kcal/mol (16609.2227 without restraints) Performing minimization step: 675. Total energy = 16608.0031 kcal/mol (16595.7390 without restraints) Performing minimization step: 676. Total energy = 16594.5411 kcal/mol (16582.2821 without restraints) Performing minimization step: 677. Total energy = 16581.1059 kcal/mol (16568.8517 without restraints) Performing minimization step: 678. Total energy = 16567.6965 kcal/mol (16555.4472 without restraints) Performing minimization step: 679. Total energy = 16554.3129 kcal/mol (16542.0684 without restraints) Performing minimization step: 680. Total energy = 16540.9555 kcal/mol (16528.7159 without restraints) Performing minimization step: 681. Total energy = 16527.6246 kcal/mol (16515.3898 without restraints) Performing minimization step: 682. Total energy = 16514.3192 kcal/mol (16502.0893 without restraints) Performing minimization step: 683. Total energy = 16501.0399 kcal/mol (16488.8149 without restraints) Performing minimization step: 684. Total energy = 16487.7865 kcal/mol (16475.5663 without restraints) Performing minimization step: 685. Total energy = 16474.5592 kcal/mol (16462.3438 without restraints) Performing minimization step: 686. Total energy = 16461.3576 kcal/mol (16449.1471 without restraints) Performing minimization step: 687. Total energy = 16448.1813 kcal/mol (16435.9757 without restraints) Performing minimization step: 688. Total energy = 16435.0303 kcal/mol (16422.8294 without restraints) Performing minimization step: 689. Total energy = 16421.9049 kcal/mol (16409.7088 without restraints) Performing minimization step: 690. Total energy = 16408.8049 kcal/mol (16396.6136 without restraints) Performing minimization step: 691. Total energy = 16395.7303 kcal/mol (16383.5439 without restraints) Performing minimization step: 692. Total energy = 16382.6809 kcal/mol (16370.4991 without restraints) Performing minimization step: 693. Total energy = 16369.6568 kcal/mol (16357.4798 without restraints) Performing minimization step: 694. Total energy = 16356.6574 kcal/mol (16344.4851 without restraints) Performing minimization step: 695. Total energy = 16343.6833 kcal/mol (16331.5157 without restraints) Performing minimization step: 696. Total energy = 16330.7337 kcal/mol (16318.5709 without restraints) Performing minimization step: 697. Total energy = 16317.8092 kcal/mol (16305.6510 without restraints) Performing minimization step: 698. Total energy = 16304.9088 kcal/mol (16292.7556 without restraints) Performing minimization step: 699. Total energy = 16292.0336 kcal/mol (16279.8851 without restraints) Performing minimization step: 700. Total energy = 16279.1833 kcal/mol (16267.0393 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 701. Total energy = 16266.3576 kcal/mol (16254.2184 without restraints) Performing minimization step: 702. Total energy = 16253.5561 kcal/mol (16241.4216 without restraints) Performing minimization step: 703. Total energy = 16240.7794 kcal/mol (16228.6496 without restraints) Performing minimization step: 704. Total energy = 16228.0266 kcal/mol (16215.9014 without restraints) Performing minimization step: 705. Total energy = 16215.2984 kcal/mol (16203.1779 without restraints) Performing minimization step: 706. Total energy = 16202.5950 kcal/mol (16190.4792 without restraints) Performing minimization step: 707. Total energy = 16189.9152 kcal/mol (16177.8040 without restraints) Performing minimization step: 708. Total energy = 16177.2595 kcal/mol (16165.1528 without restraints) Performing minimization step: 709. Total energy = 16164.6277 kcal/mol (16152.5258 without restraints) Performing minimization step: 710. Total energy = 16152.0196 kcal/mol (16139.9224 without restraints) Performing minimization step: 711. Total energy = 16139.4359 kcal/mol (16127.3434 without restraints) Performing minimization step: 712. Total energy = 16126.8760 kcal/mol (16114.7880 without restraints) Performing minimization step: 713. Total energy = 16114.3399 kcal/mol (16102.2566 without restraints) Performing minimization step: 714. Total energy = 16101.8276 kcal/mol (16089.7487 without restraints) Performing minimization step: 715. Total energy = 16089.3385 kcal/mol (16077.2641 without restraints) Performing minimization step: 716. Total energy = 16076.8731 kcal/mol (16064.8035 without restraints) Performing minimization step: 717. Total energy = 16064.4310 kcal/mol (16052.3659 without restraints) Performing minimization step: 718. Total energy = 16052.0124 kcal/mol (16039.9518 without restraints) Performing minimization step: 719. Total energy = 16039.6168 kcal/mol (16027.5608 without restraints) Performing minimization step: 720. Total energy = 16027.2444 kcal/mol (16015.1930 without restraints) Performing minimization step: 721. Total energy = 16014.8956 kcal/mol (16002.8489 without restraints) Performing minimization step: 722. Total energy = 16002.5696 kcal/mol (15990.5272 without restraints) Performing minimization step: 723. Total energy = 15990.2668 kcal/mol (15978.2289 without restraints) Performing minimization step: 724. Total energy = 15977.9870 kcal/mol (15965.9536 without restraints) Performing minimization step: 725. Total energy = 15965.7293 kcal/mol (15953.7003 without restraints) Performing minimization step: 726. Total energy = 15953.4948 kcal/mol (15941.4704 without restraints) Performing minimization step: 727. Total energy = 15941.2834 kcal/mol (15929.2636 without restraints) Performing minimization step: 728. Total energy = 15929.0951 kcal/mol (15917.0798 without restraints) Performing minimization step: 729. Total energy = 15916.9288 kcal/mol (15904.9179 without restraints) Performing minimization step: 730. Total energy = 15904.7858 kcal/mol (15892.7793 without restraints) Performing minimization step: 731. Total energy = 15892.6648 kcal/mol (15880.6627 without restraints) Performing minimization step: 732. Total energy = 15880.5662 kcal/mol (15868.5687 without restraints) Performing minimization step: 733. Total energy = 15868.4896 kcal/mol (15856.4965 without restraints) Performing minimization step: 734. Total energy = 15856.4359 kcal/mol (15844.4471 without restraints) Performing minimization step: 735. Total energy = 15844.4043 kcal/mol (15832.4202 without restraints) Performing minimization step: 736. Total energy = 15832.3950 kcal/mol (15820.4152 without restraints) Performing minimization step: 737. Total energy = 15820.4077 kcal/mol (15808.4322 without restraints) Performing minimization step: 738. Total energy = 15808.4430 kcal/mol (15796.4720 without restraints) Performing minimization step: 739. Total energy = 15796.4996 kcal/mol (15784.5328 without restraints) Performing minimization step: 740. Total energy = 15784.5783 kcal/mol (15772.6162 without restraints) Performing minimization step: 741. Total energy = 15772.6788 kcal/mol (15760.7208 without restraints) Performing minimization step: 742. Total energy = 15760.8005 kcal/mol (15748.8469 without restraints) Performing minimization step: 743. Total energy = 15748.9443 kcal/mol (15736.9952 without restraints) Performing minimization step: 744. Total energy = 15737.1100 kcal/mol (15725.1653 without restraints) Performing minimization step: 745. Total energy = 15725.2970 kcal/mol (15713.3566 without restraints) Performing minimization step: 746. Total energy = 15713.5054 kcal/mol (15701.5694 without restraints) Performing minimization step: 747. Total energy = 15701.7356 kcal/mol (15689.8040 without restraints) Performing minimization step: 748. Total energy = 15689.9866 kcal/mol (15678.0592 without restraints) Performing minimization step: 749. Total energy = 15678.2598 kcal/mol (15666.3369 without restraints) Performing minimization step: 750. Total energy = 15666.5540 kcal/mol (15654.6353 without restraints) Performing minimization step: 751. Total energy = 15654.8692 kcal/mol (15642.9547 without restraints) Performing minimization step: 752. Total energy = 15643.2058 kcal/mol (15631.2957 without restraints) Performing minimization step: 753. Total energy = 15631.5643 kcal/mol (15619.6585 without restraints) Performing minimization step: 754. Total energy = 15619.9430 kcal/mol (15608.0413 without restraints) Performing minimization step: 755. Total energy = 15608.3422 kcal/mol (15596.4448 without restraints) Performing minimization step: 756. Total energy = 15596.7632 kcal/mol (15584.8702 without restraints) Performing minimization step: 757. Total energy = 15585.2046 kcal/mol (15573.3161 without restraints) Performing minimization step: 758. Total energy = 15573.6672 kcal/mol (15561.7827 without restraints) Performing minimization step: 759. Total energy = 15562.1499 kcal/mol (15550.2698 without restraints) Performing minimization step: 760. Total energy = 15550.6532 kcal/mol (15538.7772 without restraints) Performing minimization step: 761. Total energy = 15539.1772 kcal/mol (15527.3054 without restraints) Performing minimization step: 762. Total energy = 15527.7217 kcal/mol (15515.8541 without restraints) Performing minimization step: 763. Total energy = 15516.2862 kcal/mol (15504.4228 without restraints) Performing minimization step: 764. Total energy = 15504.8710 kcal/mol (15493.0117 without restraints) Performing minimization step: 765. Total energy = 15493.4765 kcal/mol (15481.6216 without restraints) Performing minimization step: 766. Total energy = 15482.1021 kcal/mol (15470.2514 without restraints) Performing minimization step: 767. Total energy = 15470.7481 kcal/mol (15458.9015 without restraints) Performing minimization step: 768. Total energy = 15459.4146 kcal/mol (15447.5722 without restraints) Performing minimization step: 769. Total energy = 15448.1010 kcal/mol (15436.2629 without restraints) Performing minimization step: 770. Total energy = 15436.8076 kcal/mol (15424.9738 without restraints) Performing minimization step: 771. Total energy = 15425.5344 kcal/mol (15413.7046 without restraints) Performing minimization step: 772. Total energy = 15414.2808 kcal/mol (15402.4551 without restraints) Performing minimization step: 773. Total energy = 15403.0470 kcal/mol (15391.2255 without restraints) Performing minimization step: 774. Total energy = 15391.8333 kcal/mol (15380.0160 without restraints) Performing minimization step: 775. Total energy = 15380.6392 kcal/mol (15368.8260 without restraints) Performing minimization step: 776. Total energy = 15369.4648 kcal/mol (15357.6556 without restraints) Performing minimization step: 777. Total energy = 15358.3093 kcal/mol (15346.5043 without restraints) Performing minimization step: 778. Total energy = 15347.1736 kcal/mol (15335.3727 without restraints) Performing minimization step: 779. Total energy = 15336.0580 kcal/mol (15324.2611 without restraints) Performing minimization step: 780. Total energy = 15324.9620 kcal/mol (15313.1692 without restraints) Performing minimization step: 781. Total energy = 15313.8846 kcal/mol (15302.0960 without restraints) Performing minimization step: 782. Total energy = 15302.8276 kcal/mol (15291.0432 without restraints) Performing minimization step: 783. Total energy = 15291.7898 kcal/mol (15280.0093 without restraints) Performing minimization step: 784. Total energy = 15280.7708 kcal/mol (15268.9946 without restraints) Performing minimization step: 785. Total energy = 15269.7710 kcal/mol (15257.9988 without restraints) Performing minimization step: 786. Total energy = 15258.7905 kcal/mol (15247.0224 without restraints) Performing minimization step: 787. Total energy = 15247.8290 kcal/mol (15236.0648 without restraints) Performing minimization step: 788. Total energy = 15236.8863 kcal/mol (15225.1262 without restraints) Performing minimization step: 789. Total energy = 15225.9625 kcal/mol (15214.2065 without restraints) Performing minimization step: 790. Total energy = 15215.0579 kcal/mol (15203.3058 without restraints) Performing minimization step: 791. Total energy = 15204.1719 kcal/mol (15192.4239 without restraints) Performing minimization step: 792. Total energy = 15193.3048 kcal/mol (15181.5608 without restraints) Performing minimization step: 793. Total energy = 15182.4560 kcal/mol (15170.7160 without restraints) Performing minimization step: 794. Total energy = 15171.6262 kcal/mol (15159.8903 without restraints) Performing minimization step: 795. Total energy = 15160.8150 kcal/mol (15149.0830 without restraints) Performing minimization step: 796. Total energy = 15150.0226 kcal/mol (15138.2946 without restraints) Performing minimization step: 797. Total energy = 15139.2486 kcal/mol (15127.5247 without restraints) Performing minimization step: 798. Total energy = 15128.4932 kcal/mol (15116.7732 without restraints) Performing minimization step: 799. Total energy = 15117.7557 kcal/mol (15106.0397 without restraints) Performing minimization step: 800. Total energy = 15107.0368 kcal/mol (15095.3248 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 801. Total energy = 15096.3360 kcal/mol (15084.6279 without restraints) Performing minimization step: 802. Total energy = 15085.6534 kcal/mol (15073.9493 without restraints) Performing minimization step: 803. Total energy = 15074.9891 kcal/mol (15063.2889 without restraints) Performing minimization step: 804. Total energy = 15064.3430 kcal/mol (15052.6467 without restraints) Performing minimization step: 805. Total energy = 15053.7150 kcal/mol (15042.0227 without restraints) Performing minimization step: 806. Total energy = 15043.1054 kcal/mol (15031.4170 without restraints) Performing minimization step: 807. Total energy = 15032.5136 kcal/mol (15020.8292 without restraints) Performing minimization step: 808. Total energy = 15021.9396 kcal/mol (15010.2590 without restraints) Performing minimization step: 809. Total energy = 15011.3830 kcal/mol (14999.7064 without restraints) Performing minimization step: 810. Total energy = 15000.8444 kcal/mol (14989.1717 without restraints) Performing minimization step: 811. Total energy = 14990.3234 kcal/mol (14978.6546 without restraints) Performing minimization step: 812. Total energy = 14979.8202 kcal/mol (14968.1552 without restraints) Performing minimization step: 813. Total energy = 14969.3348 kcal/mol (14957.6737 without restraints) Performing minimization step: 814. Total energy = 14958.8671 kcal/mol (14947.2100 without restraints) Performing minimization step: 815. Total energy = 14948.4174 kcal/mol (14936.7642 without restraints) Performing minimization step: 816. Total energy = 14937.9853 kcal/mol (14926.3361 without restraints) Performing minimization step: 817. Total energy = 14927.5706 kcal/mol (14915.9251 without restraints) Performing minimization step: 818. Total energy = 14917.1730 kcal/mol (14905.5312 without restraints) Performing minimization step: 819. Total energy = 14906.7928 kcal/mol (14895.1549 without restraints) Performing minimization step: 820. Total energy = 14896.4295 kcal/mol (14884.7955 without restraints) Performing minimization step: 821. Total energy = 14886.0835 kcal/mol (14874.4533 without restraints) Performing minimization step: 822. Total energy = 14875.7555 kcal/mol (14864.1291 without restraints) Performing minimization step: 823. Total energy = 14865.4441 kcal/mol (14853.8215 without restraints) Performing minimization step: 824. Total energy = 14855.1497 kcal/mol (14843.5310 without restraints) Performing minimization step: 825. Total energy = 14844.8725 kcal/mol (14833.2576 without restraints) Performing minimization step: 826. Total energy = 14834.6118 kcal/mol (14823.0006 without restraints) Performing minimization step: 827. Total energy = 14824.3681 kcal/mol (14812.7608 without restraints) Performing minimization step: 828. Total energy = 14814.1414 kcal/mol (14802.5379 without restraints) Performing minimization step: 829. Total energy = 14803.9322 kcal/mol (14792.3325 without restraints) Performing minimization step: 830. Total energy = 14793.7393 kcal/mol (14782.1434 without restraints) Performing minimization step: 831. Total energy = 14783.5638 kcal/mol (14771.9716 without restraints) Performing minimization step: 832. Total energy = 14773.4045 kcal/mol (14761.8161 without restraints) Performing minimization step: 833. Total energy = 14763.2617 kcal/mol (14751.6771 without restraints) Performing minimization step: 834. Total energy = 14753.1356 kcal/mol (14741.5549 without restraints) Performing minimization step: 835. Total energy = 14743.0263 kcal/mol (14731.4493 without restraints) Performing minimization step: 836. Total energy = 14732.9337 kcal/mol (14721.3603 without restraints) Performing minimization step: 837. Total energy = 14722.8574 kcal/mol (14711.2878 without restraints) Performing minimization step: 838. Total energy = 14712.7972 kcal/mol (14701.2313 without restraints) Performing minimization step: 839. Total energy = 14702.7536 kcal/mol (14691.1915 without restraints) Performing minimization step: 840. Total energy = 14692.7262 kcal/mol (14681.1677 without restraints) Performing minimization step: 841. Total energy = 14682.7157 kcal/mol (14671.1610 without restraints) Performing minimization step: 842. Total energy = 14672.7210 kcal/mol (14661.1700 without restraints) Performing minimization step: 843. Total energy = 14662.7428 kcal/mol (14651.1956 without restraints) Performing minimization step: 844. Total energy = 14652.7801 kcal/mol (14641.2364 without restraints) Performing minimization step: 845. Total energy = 14642.8334 kcal/mol (14631.2936 without restraints) Performing minimization step: 846. Total energy = 14632.9028 kcal/mol (14621.3666 without restraints) Performing minimization step: 847. Total energy = 14622.9880 kcal/mol (14611.4555 without restraints) Performing minimization step: 848. Total energy = 14613.0899 kcal/mol (14601.5614 without restraints) Performing minimization step: 849. Total energy = 14603.2078 kcal/mol (14591.6827 without restraints) Performing minimization step: 850. Total energy = 14593.3413 kcal/mol (14581.8199 without restraints) Performing minimization step: 851. Total energy = 14583.4906 kcal/mol (14571.9728 without restraints) Performing minimization step: 852. Total energy = 14573.6556 kcal/mol (14562.1414 without restraints) Performing minimization step: 853. Total energy = 14563.8366 kcal/mol (14552.3262 without restraints) Performing minimization step: 854. Total energy = 14554.0332 kcal/mol (14542.5264 without restraints) Performing minimization step: 855. Total energy = 14544.2454 kcal/mol (14532.7423 without restraints) Performing minimization step: 856. Total energy = 14534.4732 kcal/mol (14522.9737 without restraints) Performing minimization step: 857. Total energy = 14524.7164 kcal/mol (14513.2205 without restraints) Performing minimization step: 858. Total energy = 14514.9755 kcal/mol (14503.4833 without restraints) Performing minimization step: 859. Total energy = 14505.2497 kcal/mol (14493.7609 without restraints) Performing minimization step: 860. Total energy = 14495.5397 kcal/mol (14484.0547 without restraints) Performing minimization step: 861. Total energy = 14485.8442 kcal/mol (14474.3628 without restraints) Performing minimization step: 862. Total energy = 14476.1652 kcal/mol (14464.6874 without restraints) Performing minimization step: 863. Total energy = 14466.5007 kcal/mol (14455.0266 without restraints) Performing minimization step: 864. Total energy = 14456.8521 kcal/mol (14445.3817 without restraints) Performing minimization step: 865. Total energy = 14447.2187 kcal/mol (14435.7518 without restraints) Performing minimization step: 866. Total energy = 14437.6003 kcal/mol (14426.1369 without restraints) Performing minimization step: 867. Total energy = 14427.9966 kcal/mol (14416.5367 without restraints) Performing minimization step: 868. Total energy = 14418.4081 kcal/mol (14406.9519 without restraints) Performing minimization step: 869. Total energy = 14408.8349 kcal/mol (14397.3823 without restraints) Performing minimization step: 870. Total energy = 14399.2769 kcal/mol (14387.8278 without restraints) Performing minimization step: 871. Total energy = 14389.7338 kcal/mol (14378.2882 without restraints) Performing minimization step: 872. Total energy = 14380.2051 kcal/mol (14368.7630 without restraints) Performing minimization step: 873. Total energy = 14370.6911 kcal/mol (14359.2527 without restraints) Performing minimization step: 874. Total energy = 14361.1925 kcal/mol (14349.7576 without restraints) Performing minimization step: 875. Total energy = 14351.7081 kcal/mol (14340.2767 without restraints) Performing minimization step: 876. Total energy = 14342.2392 kcal/mol (14330.8113 without restraints) Performing minimization step: 877. Total energy = 14332.7845 kcal/mol (14321.3602 without restraints) Performing minimization step: 878. Total energy = 14323.3446 kcal/mol (14311.9237 without restraints) Performing minimization step: 879. Total energy = 14313.9194 kcal/mol (14302.5021 without restraints) Performing minimization step: 880. Total energy = 14304.5094 kcal/mol (14293.0957 without restraints) Performing minimization step: 881. Total energy = 14295.1143 kcal/mol (14283.7042 without restraints) Performing minimization step: 882. Total energy = 14285.7330 kcal/mol (14274.3263 without restraints) Performing minimization step: 883. Total energy = 14276.3662 kcal/mol (14264.9629 without restraints) Performing minimization step: 884. Total energy = 14267.0137 kcal/mol (14255.6140 without restraints) Performing minimization step: 885. Total energy = 14257.6758 kcal/mol (14246.2795 without restraints) Performing minimization step: 886. Total energy = 14248.3517 kcal/mol (14236.9591 without restraints) Performing minimization step: 887. Total energy = 14239.0425 kcal/mol (14227.6532 without restraints) Performing minimization step: 888. Total energy = 14229.7473 kcal/mol (14218.3615 without restraints) Performing minimization step: 889. Total energy = 14220.4663 kcal/mol (14209.0839 without restraints) Performing minimization step: 890. Total energy = 14211.1995 kcal/mol (14199.8206 without restraints) Performing minimization step: 891. Total energy = 14201.9469 kcal/mol (14190.5715 without restraints) Performing minimization step: 892. Total energy = 14192.7080 kcal/mol (14181.3361 without restraints) Performing minimization step: 893. Total energy = 14183.4837 kcal/mol (14172.1153 without restraints) Performing minimization step: 894. Total energy = 14174.2736 kcal/mol (14162.9084 without restraints) Performing minimization step: 895. Total energy = 14165.0774 kcal/mol (14153.7160 without restraints) Performing minimization step: 896. Total energy = 14155.8945 kcal/mol (14144.5363 without restraints) Performing minimization step: 897. Total energy = 14146.7258 kcal/mol (14135.3710 without restraints) Performing minimization step: 898. Total energy = 14137.5712 kcal/mol (14126.2199 without restraints) Performing minimization step: 899. Total energy = 14128.4307 kcal/mol (14117.0829 without restraints) Performing minimization step: 900. Total energy = 14119.3040 kcal/mol (14107.9596 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 901. Total energy = 14110.1910 kcal/mol (14098.8499 without restraints) Performing minimization step: 902. Total energy = 14101.0918 kcal/mol (14089.7542 without restraints) Performing minimization step: 903. Total energy = 14092.0061 kcal/mol (14080.6719 without restraints) Performing minimization step: 904. Total energy = 14082.9342 kcal/mol (14071.6034 without restraints) Performing minimization step: 905. Total energy = 14073.8759 kcal/mol (14062.5485 without restraints) Performing minimization step: 906. Total energy = 14064.8316 kcal/mol (14053.5076 without restraints) Performing minimization step: 907. Total energy = 14055.8003 kcal/mol (14044.4796 without restraints) Performing minimization step: 908. Total energy = 14046.7826 kcal/mol (14035.4653 without restraints) Performing minimization step: 909. Total energy = 14037.7788 kcal/mol (14026.4650 without restraints) Performing minimization step: 910. Total energy = 14028.7881 kcal/mol (14017.4776 without restraints) Performing minimization step: 911. Total energy = 14019.8108 kcal/mol (14008.5037 without restraints) Performing minimization step: 912. Total energy = 14010.8471 kcal/mol (13999.5433 without restraints) Performing minimization step: 913. Total energy = 14001.8965 kcal/mol (13990.5961 without restraints) Performing minimization step: 914. Total energy = 13992.9597 kcal/mol (13981.6627 without restraints) Performing minimization step: 915. Total energy = 13984.0351 kcal/mol (13972.7414 without restraints) Performing minimization step: 916. Total energy = 13975.1242 kcal/mol (13963.8339 without restraints) Performing minimization step: 917. Total energy = 13966.2268 kcal/mol (13954.9398 without restraints) Performing minimization step: 918. Total energy = 13957.3424 kcal/mol (13946.0588 without restraints) Performing minimization step: 919. Total energy = 13948.4714 kcal/mol (13937.1911 without restraints) Performing minimization step: 920. Total energy = 13939.6131 kcal/mol (13928.3361 without restraints) Performing minimization step: 921. Total energy = 13930.7680 kcal/mol (13919.4943 without restraints) Performing minimization step: 922. Total energy = 13921.9360 kcal/mol (13910.6657 without restraints) Performing minimization step: 923. Total energy = 13913.1176 kcal/mol (13901.8506 without restraints) Performing minimization step: 924. Total energy = 13904.3123 kcal/mol (13893.0486 without restraints) Performing minimization step: 925. Total energy = 13895.5194 kcal/mol (13884.2591 without restraints) Performing minimization step: 926. Total energy = 13886.7392 kcal/mol (13875.4822 without restraints) Performing minimization step: 927. Total energy = 13877.9719 kcal/mol (13866.7181 without restraints) Performing minimization step: 928. Total energy = 13869.2174 kcal/mol (13857.9670 without restraints) Performing minimization step: 929. Total energy = 13860.4756 kcal/mol (13849.2286 without restraints) Performing minimization step: 930. Total energy = 13851.7468 kcal/mol (13840.5030 without restraints) Performing minimization step: 931. Total energy = 13843.0308 kcal/mol (13831.7902 without restraints) Performing minimization step: 932. Total energy = 13834.3276 kcal/mol (13823.0904 without restraints) Performing minimization step: 933. Total energy = 13825.6369 kcal/mol (13814.4028 without restraints) Performing minimization step: 934. Total energy = 13816.9587 kcal/mol (13805.7279 without restraints) Performing minimization step: 935. Total energy = 13808.2929 kcal/mol (13797.0654 without restraints) Performing minimization step: 936. Total energy = 13799.6396 kcal/mol (13788.4154 without restraints) Performing minimization step: 937. Total energy = 13790.9993 kcal/mol (13779.7784 without restraints) Performing minimization step: 938. Total energy = 13782.3706 kcal/mol (13771.1529 without restraints) Performing minimization step: 939. Total energy = 13773.7548 kcal/mol (13762.5404 without restraints) Performing minimization step: 940. Total energy = 13765.1517 kcal/mol (13753.9403 without restraints) Performing minimization step: 941. Total energy = 13756.5608 kcal/mol (13745.3529 without restraints) Performing minimization step: 942. Total energy = 13747.9824 kcal/mol (13736.7777 without restraints) Performing minimization step: 943. Total energy = 13739.4167 kcal/mol (13728.2152 without restraints) Performing minimization step: 944. Total energy = 13730.8637 kcal/mol (13719.6655 without restraints) Performing minimization step: 945. Total energy = 13722.3228 kcal/mol (13711.1278 without restraints) Performing minimization step: 946. Total energy = 13713.7937 kcal/mol (13702.6020 without restraints) Performing minimization step: 947. Total energy = 13705.2769 kcal/mol (13694.0884 without restraints) Performing minimization step: 948. Total energy = 13696.7721 kcal/mol (13685.5868 without restraints) Performing minimization step: 949. Total energy = 13688.2796 kcal/mol (13677.0976 without restraints) Performing minimization step: 950. Total energy = 13679.7992 kcal/mol (13668.6202 without restraints) Performing minimization step: 951. Total energy = 13671.3307 kcal/mol (13660.1551 without restraints) Performing minimization step: 952. Total energy = 13662.8746 kcal/mol (13651.7021 without restraints) Performing minimization step: 953. Total energy = 13654.4307 kcal/mol (13643.2614 without restraints) Performing minimization step: 954. Total energy = 13645.9984 kcal/mol (13634.8324 without restraints) Performing minimization step: 955. Total energy = 13637.5783 kcal/mol (13626.4154 without restraints) Performing minimization step: 956. Total energy = 13629.1699 kcal/mol (13618.0102 without restraints) Performing minimization step: 957. Total energy = 13620.7736 kcal/mol (13609.6170 without restraints) Performing minimization step: 958. Total energy = 13612.3890 kcal/mol (13601.2357 without restraints) Performing minimization step: 959. Total energy = 13604.0169 kcal/mol (13592.8668 without restraints) Performing minimization step: 960. Total energy = 13595.6563 kcal/mol (13584.5095 without restraints) Performing minimization step: 961. Total energy = 13587.3073 kcal/mol (13576.1635 without restraints) Performing minimization step: 962. Total energy = 13578.9702 kcal/mol (13567.8296 without restraints) Performing minimization step: 963. Total energy = 13570.6452 kcal/mol (13559.5077 without restraints) Performing minimization step: 964. Total energy = 13562.3315 kcal/mol (13551.1972 without restraints) Performing minimization step: 965. Total energy = 13554.0295 kcal/mol (13542.8984 without restraints) Performing minimization step: 966. Total energy = 13545.7392 kcal/mol (13534.6112 without restraints) Performing minimization step: 967. Total energy = 13537.4605 kcal/mol (13526.3356 without restraints) Performing minimization step: 968. Total energy = 13529.1934 kcal/mol (13518.0717 without restraints) Performing minimization step: 969. Total energy = 13520.9379 kcal/mol (13509.8193 without restraints) Performing minimization step: 970. Total energy = 13512.6941 kcal/mol (13501.5789 without restraints) Performing minimization step: 971. Total energy = 13504.4622 kcal/mol (13493.3499 without restraints) Performing minimization step: 972. Total energy = 13496.2412 kcal/mol (13485.1321 without restraints) Performing minimization step: 973. Total energy = 13488.0317 kcal/mol (13476.9257 without restraints) Performing minimization step: 974. Total energy = 13479.8334 kcal/mol (13468.7303 without restraints) Performing minimization step: 975. Total energy = 13471.6464 kcal/mol (13460.5465 without restraints) Performing minimization step: 976. Total energy = 13463.4714 kcal/mol (13452.3747 without restraints) Performing minimization step: 977. Total energy = 13455.3073 kcal/mol (13444.2137 without restraints) Performing minimization step: 978. Total energy = 13447.1549 kcal/mol (13436.0645 without restraints) Performing minimization step: 979. Total energy = 13439.0135 kcal/mol (13427.9262 without restraints) Performing minimization step: 980. Total energy = 13430.8839 kcal/mol (13419.7997 without restraints) Performing minimization step: 981. Total energy = 13422.7653 kcal/mol (13411.6844 without restraints) Performing minimization step: 982. Total energy = 13414.6579 kcal/mol (13403.5799 without restraints) Performing minimization step: 983. Total energy = 13406.5614 kcal/mol (13395.4866 without restraints) Performing minimization step: 984. Total energy = 13398.4762 kcal/mol (13387.4045 without restraints) Performing minimization step: 985. Total energy = 13390.4022 kcal/mol (13379.3335 without restraints) Performing minimization step: 986. Total energy = 13382.3392 kcal/mol (13371.2736 without restraints) Performing minimization step: 987. Total energy = 13374.2872 kcal/mol (13363.2246 without restraints) Performing minimization step: 988. Total energy = 13366.2459 kcal/mol (13355.1864 without restraints) Performing minimization step: 989. Total energy = 13358.2159 kcal/mol (13347.1595 without restraints) Performing minimization step: 990. Total energy = 13350.1970 kcal/mol (13339.1437 without restraints) Performing minimization step: 991. Total energy = 13342.1892 kcal/mol (13331.1390 without restraints) Performing minimization step: 992. Total energy = 13334.1923 kcal/mol (13323.1451 without restraints) Performing minimization step: 993. Total energy = 13326.2062 kcal/mol (13315.1621 without restraints) Performing minimization step: 994. Total energy = 13318.2314 kcal/mol (13307.1903 without restraints) Performing minimization step: 995. Total energy = 13310.2669 kcal/mol (13299.2289 without restraints) Performing minimization step: 996. Total energy = 13302.3138 kcal/mol (13291.2789 without restraints) Performing minimization step: 997. Total energy = 13294.3711 kcal/mol (13283.3392 without restraints) Performing minimization step: 998. Total energy = 13286.4398 kcal/mol (13275.4109 without restraints) Performing minimization step: 999. Total energy = 13278.5189 kcal/mol (13267.4931 without restraints) Performing minimization step: 1000. Total energy = 13270.6086 kcal/mol (13259.5857 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 13262.7090 kcal/mol (13251.6892 without restraints) Performing minimization step: 1002. Total energy = 13254.8200 kcal/mol (13243.8033 without restraints) Performing minimization step: 1003. Total energy = 13246.9421 kcal/mol (13235.9285 without restraints) Performing minimization step: 1004. Total energy = 13239.0751 kcal/mol (13228.0645 without restraints) Performing minimization step: 1005. Total energy = 13231.2185 kcal/mol (13220.2109 without restraints) Performing minimization step: 1006. Total energy = 13223.3719 kcal/mol (13212.3672 without restraints) Performing minimization step: 1007. Total energy = 13215.5361 kcal/mol (13204.5345 without restraints) Performing minimization step: 1008. Total energy = 13207.7113 kcal/mol (13196.7127 without restraints) Performing minimization step: 1009. Total energy = 13199.8972 kcal/mol (13188.9016 without restraints) Performing minimization step: 1010. Total energy = 13192.0935 kcal/mol (13181.1011 without restraints) Performing minimization step: 1011. Total energy = 13184.3002 kcal/mol (13173.3107 without restraints) Performing minimization step: 1012. Total energy = 13176.5172 kcal/mol (13165.5307 without restraints) Performing minimization step: 1013. Total energy = 13168.7444 kcal/mol (13157.7609 without restraints) Performing minimization step: 1014. Total energy = 13160.9822 kcal/mol (13150.0015 without restraints) Performing minimization step: 1015. Total energy = 13153.2301 kcal/mol (13142.2526 without restraints) Performing minimization step: 1016. Total energy = 13145.4889 kcal/mol (13134.5143 without restraints) Performing minimization step: 1017. Total energy = 13137.7576 kcal/mol (13126.7861 without restraints) Performing minimization step: 1018. Total energy = 13130.0367 kcal/mol (13119.0682 without restraints) Performing minimization step: 1019. Total energy = 13122.3260 kcal/mol (13111.3604 without restraints) Performing minimization step: 1020. Total energy = 13114.6257 kcal/mol (13103.6631 without restraints) Performing minimization step: 1021. Total energy = 13106.9355 kcal/mol (13095.9759 without restraints) Performing minimization step: 1022. Total energy = 13099.2558 kcal/mol (13088.2992 without restraints) Performing minimization step: 1023. Total energy = 13091.5863 kcal/mol (13080.6326 without restraints) Performing minimization step: 1024. Total energy = 13083.9269 kcal/mol (13072.9762 without restraints) Performing minimization step: 1025. Total energy = 13076.2775 kcal/mol (13065.3298 without restraints) Performing minimization step: 1026. Total energy = 13068.6381 kcal/mol (13057.6933 without restraints) Performing minimization step: 1027. Total energy = 13061.0091 kcal/mol (13050.0673 without restraints) Performing minimization step: 1028. Total energy = 13053.3901 kcal/mol (13042.4512 without restraints) Performing minimization step: 1029. Total energy = 13045.7813 kcal/mol (13034.8454 without restraints) Performing minimization step: 1030. Total energy = 13038.1825 kcal/mol (13027.2495 without restraints) Performing minimization step: 1031. Total energy = 13030.5939 kcal/mol (13019.6640 without restraints) Performing minimization step: 1032. Total energy = 13023.0150 kcal/mol (13012.0880 without restraints) Performing minimization step: 1033. Total energy = 13015.4465 kcal/mol (13004.5224 without restraints) Performing minimization step: 1034. Total energy = 13007.8877 kcal/mol (12996.9666 without restraints) Performing minimization step: 1035. Total energy = 13000.3390 kcal/mol (12989.4208 without restraints) Performing minimization step: 1036. Total energy = 12992.8002 kcal/mol (12981.8849 without restraints) Performing minimization step: 1037. Total energy = 12985.2707 kcal/mol (12974.3584 without restraints) Performing minimization step: 1038. Total energy = 12977.7515 kcal/mol (12966.8422 without restraints) Performing minimization step: 1039. Total energy = 12970.2422 kcal/mol (12959.3357 without restraints) Performing minimization step: 1040. Total energy = 12962.7429 kcal/mol (12951.8393 without restraints) Performing minimization step: 1041. Total energy = 12955.2537 kcal/mol (12944.3532 without restraints) Performing minimization step: 1042. Total energy = 12947.7739 kcal/mol (12936.8761 without restraints) Performing minimization step: 1043. Total energy = 12940.3038 kcal/mol (12929.4090 without restraints) Performing minimization step: 1044. Total energy = 12932.8434 kcal/mol (12921.9515 without restraints) Performing minimization step: 1045. Total energy = 12925.3927 kcal/mol (12914.5037 without restraints) Performing minimization step: 1046. Total energy = 12917.9516 kcal/mol (12907.0656 without restraints) Performing minimization step: 1047. Total energy = 12910.5204 kcal/mol (12899.6374 without restraints) Performing minimization step: 1048. Total energy = 12903.0994 kcal/mol (12892.2192 without restraints) Performing minimization step: 1049. Total energy = 12895.6877 kcal/mol (12884.8103 without restraints) Performing minimization step: 1050. Total energy = 12888.2853 kcal/mol (12877.4108 without restraints) Performing minimization step: 1051. Total energy = 12880.8926 kcal/mol (12870.0211 without restraints) Performing minimization step: 1052. Total energy = 12873.5097 kcal/mol (12862.6411 without restraints) Performing minimization step: 1053. Total energy = 12866.1363 kcal/mol (12855.2705 without restraints) Performing minimization step: 1054. Total energy = 12858.7722 kcal/mol (12847.9094 without restraints) Performing minimization step: 1055. Total energy = 12851.4178 kcal/mol (12840.5579 without restraints) Performing minimization step: 1056. Total energy = 12844.0727 kcal/mol (12833.2156 without restraints) Performing minimization step: 1057. Total energy = 12836.7373 kcal/mol (12825.8831 without restraints) Performing minimization step: 1058. Total energy = 12829.4107 kcal/mol (12818.5594 without restraints) Performing minimization step: 1059. Total energy = 12822.0934 kcal/mol (12811.2450 without restraints) Performing minimization step: 1060. Total energy = 12814.7864 kcal/mol (12803.9409 without restraints) Performing minimization step: 1061. Total energy = 12807.4885 kcal/mol (12796.6459 without restraints) Performing minimization step: 1062. Total energy = 12800.2001 kcal/mol (12789.3603 without restraints) Performing minimization step: 1063. Total energy = 12792.9209 kcal/mol (12782.0839 without restraints) Performing minimization step: 1064. Total energy = 12785.6510 kcal/mol (12774.8170 without restraints) Performing minimization step: 1065. Total energy = 12778.3904 kcal/mol (12767.5592 without restraints) Performing minimization step: 1066. Total energy = 12771.1395 kcal/mol (12760.3113 without restraints) Performing minimization step: 1067. Total energy = 12763.8977 kcal/mol (12753.0723 without restraints) Performing minimization step: 1068. Total energy = 12756.6653 kcal/mol (12745.8427 without restraints) Performing minimization step: 1069. Total energy = 12749.4419 kcal/mol (12738.6221 without restraints) Performing minimization step: 1070. Total energy = 12742.2285 kcal/mol (12731.4116 without restraints) Performing minimization step: 1071. Total energy = 12735.0233 kcal/mol (12724.2092 without restraints) Performing minimization step: 1072. Total energy = 12727.8274 kcal/mol (12717.0162 without restraints) Performing minimization step: 1073. Total energy = 12720.6408 kcal/mol (12709.8323 without restraints) Performing minimization step: 1074. Total energy = 12713.4638 kcal/mol (12702.6585 without restraints) Performing minimization step: 1075. Total energy = 12706.2954 kcal/mol (12695.4927 without restraints) Performing minimization step: 1076. Total energy = 12699.1364 kcal/mol (12688.3365 without restraints) Performing minimization step: 1077. Total energy = 12691.9862 kcal/mol (12681.1892 without restraints) Performing minimization step: 1078. Total energy = 12684.8451 kcal/mol (12674.0509 without restraints) Performing minimization step: 1079. Total energy = 12677.7130 kcal/mol (12666.9217 without restraints) Performing minimization step: 1080. Total energy = 12670.5900 kcal/mol (12659.8014 without restraints) Performing minimization step: 1081. Total energy = 12663.4759 kcal/mol (12652.6902 without restraints) Performing minimization step: 1082. Total energy = 12656.3712 kcal/mol (12645.5883 without restraints) Performing minimization step: 1083. Total energy = 12649.2749 kcal/mol (12638.4949 without restraints) Performing minimization step: 1084. Total energy = 12642.1879 kcal/mol (12631.4107 without restraints) Performing minimization step: 1085. Total energy = 12635.1103 kcal/mol (12624.3360 without restraints) Performing minimization step: 1086. Total energy = 12628.0412 kcal/mol (12617.2696 without restraints) Performing minimization step: 1087. Total energy = 12620.9808 kcal/mol (12610.2120 without restraints) Performing minimization step: 1088. Total energy = 12613.9296 kcal/mol (12603.1637 without restraints) Performing minimization step: 1089. Total energy = 12606.8871 kcal/mol (12596.1239 without restraints) Performing minimization step: 1090. Total energy = 12599.8536 kcal/mol (12589.0933 without restraints) Performing minimization step: 1091. Total energy = 12592.8288 kcal/mol (12582.0713 without restraints) Performing minimization step: 1092. Total energy = 12585.8130 kcal/mol (12575.0582 without restraints) Performing minimization step: 1093. Total energy = 12578.8059 kcal/mol (12568.0540 without restraints) Performing minimization step: 1094. Total energy = 12571.8074 kcal/mol (12561.0583 without restraints) Performing minimization step: 1095. Total energy = 12564.8177 kcal/mol (12554.0714 without restraints) Performing minimization step: 1096. Total energy = 12557.8369 kcal/mol (12547.0933 without restraints) Performing minimization step: 1097. Total energy = 12550.8643 kcal/mol (12540.1235 without restraints) Performing minimization step: 1098. Total energy = 12543.9005 kcal/mol (12533.1625 without restraints) Performing minimization step: 1099. Total energy = 12536.9459 kcal/mol (12526.2107 without restraints) Performing minimization step: 1100. Total energy = 12530.0002 kcal/mol (12519.2677 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 12523.0626 kcal/mol (12512.3330 without restraints) Performing minimization step: 1102. Total energy = 12516.1338 kcal/mol (12505.4070 without restraints) Performing minimization step: 1103. Total energy = 12509.2141 kcal/mol (12498.4900 without restraints) Performing minimization step: 1104. Total energy = 12502.3027 kcal/mol (12491.5814 without restraints) Performing minimization step: 1105. Total energy = 12495.4000 kcal/mol (12484.6815 without restraints) Performing minimization step: 1106. Total energy = 12488.5058 kcal/mol (12477.7901 without restraints) Performing minimization step: 1107. Total energy = 12481.6200 kcal/mol (12470.9071 without restraints) Performing minimization step: 1108. Total energy = 12474.7428 kcal/mol (12464.0326 without restraints) Performing minimization step: 1109. Total energy = 12467.8741 kcal/mol (12457.1666 without restraints) Performing minimization step: 1110. Total energy = 12461.0136 kcal/mol (12450.3090 without restraints) Performing minimization step: 1111. Total energy = 12454.1619 kcal/mol (12443.4600 without restraints) Performing minimization step: 1112. Total energy = 12447.3188 kcal/mol (12436.6197 without restraints) Performing minimization step: 1113. Total energy = 12440.4842 kcal/mol (12429.7880 without restraints) Performing minimization step: 1114. Total energy = 12433.6583 kcal/mol (12422.9648 without restraints) Performing minimization step: 1115. Total energy = 12426.8404 kcal/mol (12416.1496 without restraints) Performing minimization step: 1116. Total energy = 12420.0308 kcal/mol (12409.3427 without restraints) Performing minimization step: 1117. Total energy = 12413.2298 kcal/mol (12402.5444 without restraints) Performing minimization step: 1118. Total energy = 12406.4373 kcal/mol (12395.7550 without restraints) Performing minimization step: 1119. Total energy = 12399.6532 kcal/mol (12388.9734 without restraints) Performing minimization step: 1120. Total energy = 12392.8774 kcal/mol (12382.2004 without restraints) Performing minimization step: 1121. Total energy = 12386.1098 kcal/mol (12375.4354 without restraints) Performing minimization step: 1122. Total energy = 12379.3503 kcal/mol (12368.6787 without restraints) Performing minimization step: 1123. Total energy = 12372.5995 kcal/mol (12361.9307 without restraints) Performing minimization step: 1124. Total energy = 12365.8570 kcal/mol (12355.1909 without restraints) Performing minimization step: 1125. Total energy = 12359.1223 kcal/mol (12348.4589 without restraints) Performing minimization step: 1126. Total energy = 12352.3958 kcal/mol (12341.7351 without restraints) Performing minimization step: 1127. Total energy = 12345.6779 kcal/mol (12335.0200 without restraints) Performing minimization step: 1128. Total energy = 12338.9677 kcal/mol (12328.3126 without restraints) Performing minimization step: 1129. Total energy = 12332.2663 kcal/mol (12321.6138 without restraints) Performing minimization step: 1130. Total energy = 12325.5733 kcal/mol (12314.9236 without restraints) Performing minimization step: 1131. Total energy = 12318.8882 kcal/mol (12308.2412 without restraints) Performing minimization step: 1132. Total energy = 12312.2114 kcal/mol (12301.5671 without restraints) Performing minimization step: 1133. Total energy = 12305.5425 kcal/mol (12294.9010 without restraints) Performing minimization step: 1134. Total energy = 12298.8819 kcal/mol (12288.2432 without restraints) Performing minimization step: 1135. Total energy = 12292.2295 kcal/mol (12281.5934 without restraints) Performing minimization step: 1136. Total energy = 12285.5852 kcal/mol (12274.9518 without restraints) Performing minimization step: 1137. Total energy = 12278.9489 kcal/mol (12268.3181 without restraints) Performing minimization step: 1138. Total energy = 12272.3204 kcal/mol (12261.6925 without restraints) Performing minimization step: 1139. Total energy = 12265.7003 kcal/mol (12255.0749 without restraints) Performing minimization step: 1140. Total energy = 12259.0878 kcal/mol (12248.4652 without restraints) Performing minimization step: 1141. Total energy = 12252.4835 kcal/mol (12241.8637 without restraints) Performing minimization step: 1142. Total energy = 12245.8870 kcal/mol (12235.2699 without restraints) Performing minimization step: 1143. Total energy = 12239.2987 kcal/mol (12228.6843 without restraints) Performing minimization step: 1144. Total energy = 12232.7187 kcal/mol (12222.1070 without restraints) Performing minimization step: 1145. Total energy = 12226.1464 kcal/mol (12215.5374 without restraints) Performing minimization step: 1146. Total energy = 12219.5820 kcal/mol (12208.9756 without restraints) Performing minimization step: 1147. Total energy = 12213.0256 kcal/mol (12202.4219 without restraints) Performing minimization step: 1148. Total energy = 12206.4770 kcal/mol (12195.8761 without restraints) Performing minimization step: 1149. Total energy = 12199.9363 kcal/mol (12189.3380 without restraints) Performing minimization step: 1150. Total energy = 12193.4035 kcal/mol (12182.8081 without restraints) Performing minimization step: 1151. Total energy = 12186.8789 kcal/mol (12176.2862 without restraints) Performing minimization step: 1152. Total energy = 12180.3620 kcal/mol (12169.7718 without restraints) Performing minimization step: 1153. Total energy = 12173.8530 kcal/mol (12163.2655 without restraints) Performing minimization step: 1154. Total energy = 12167.3521 kcal/mol (12156.7674 without restraints) Performing minimization step: 1155. Total energy = 12160.8590 kcal/mol (12150.2769 without restraints) Performing minimization step: 1156. Total energy = 12154.3735 kcal/mol (12143.7940 without restraints) Performing minimization step: 1157. Total energy = 12147.8962 kcal/mol (12137.3194 without restraints) Performing minimization step: 1158. Total energy = 12141.4261 kcal/mol (12130.8520 without restraints) Performing minimization step: 1159. Total energy = 12134.9640 kcal/mol (12124.3926 without restraints) Performing minimization step: 1160. Total energy = 12128.5096 kcal/mol (12117.9408 without restraints) Performing minimization step: 1161. Total energy = 12122.0627 kcal/mol (12111.4966 without restraints) Performing minimization step: 1162. Total energy = 12115.6238 kcal/mol (12105.0604 without restraints) Performing minimization step: 1163. Total energy = 12109.1927 kcal/mol (12098.6320 without restraints) Performing minimization step: 1164. Total energy = 12102.7691 kcal/mol (12092.2110 without restraints) Performing minimization step: 1165. Total energy = 12096.3529 kcal/mol (12085.7975 without restraints) Performing minimization step: 1166. Total energy = 12089.9448 kcal/mol (12079.3923 without restraints) Performing minimization step: 1167. Total energy = 12083.5446 kcal/mol (12072.9945 without restraints) Performing minimization step: 1168. Total energy = 12077.1516 kcal/mol (12066.6042 without restraints) Performing minimization step: 1169. Total energy = 12070.7663 kcal/mol (12060.2218 without restraints) Performing minimization step: 1170. Total energy = 12064.3888 kcal/mol (12053.8469 without restraints) Performing minimization step: 1171. Total energy = 12058.0186 kcal/mol (12047.4791 without restraints) Performing minimization step: 1172. Total energy = 12051.6561 kcal/mol (12041.1195 without restraints) Performing minimization step: 1173. Total energy = 12045.3017 kcal/mol (12034.7676 without restraints) Performing minimization step: 1174. Total energy = 12038.9543 kcal/mol (12028.4228 without restraints) Performing minimization step: 1175. Total energy = 12032.6144 kcal/mol (12022.0856 without restraints) Performing minimization step: 1176. Total energy = 12026.2823 kcal/mol (12015.7561 without restraints) Performing minimization step: 1177. Total energy = 12019.9576 kcal/mol (12009.4342 without restraints) Performing minimization step: 1178. Total energy = 12013.6403 kcal/mol (12003.1193 without restraints) Performing minimization step: 1179. Total energy = 12007.3303 kcal/mol (11996.8121 without restraints) Performing minimization step: 1180. Total energy = 12001.0283 kcal/mol (11990.5129 without restraints) Performing minimization step: 1181. Total energy = 11994.7332 kcal/mol (11984.2203 without restraints) Performing minimization step: 1182. Total energy = 11988.4457 kcal/mol (11977.9354 without restraints) Performing minimization step: 1183. Total energy = 11982.1657 kcal/mol (11971.6581 without restraints) Performing minimization step: 1184. Total energy = 11975.8929 kcal/mol (11965.3879 without restraints) Performing minimization step: 1185. Total energy = 11969.6278 kcal/mol (11959.1255 without restraints) Performing minimization step: 1186. Total energy = 11963.3699 kcal/mol (11952.8702 without restraints) Performing minimization step: 1187. Total energy = 11957.1196 kcal/mol (11946.6226 without restraints) Performing minimization step: 1188. Total energy = 11950.8767 kcal/mol (11940.3822 without restraints) Performing minimization step: 1189. Total energy = 11944.6411 kcal/mol (11934.1493 without restraints) Performing minimization step: 1190. Total energy = 11938.4130 kcal/mol (11927.9238 without restraints) Performing minimization step: 1191. Total energy = 11932.1919 kcal/mol (11921.7053 without restraints) Performing minimization step: 1192. Total energy = 11925.9787 kcal/mol (11915.4949 without restraints) Performing minimization step: 1193. Total energy = 11919.7726 kcal/mol (11909.2913 without restraints) Performing minimization step: 1194. Total energy = 11913.5741 kcal/mol (11903.0955 without restraints) Performing minimization step: 1195. Total energy = 11907.3824 kcal/mol (11896.9063 without restraints) Performing minimization step: 1196. Total energy = 11901.1980 kcal/mol (11890.7246 without restraints) Performing minimization step: 1197. Total energy = 11895.0209 kcal/mol (11884.5501 without restraints) Performing minimization step: 1198. Total energy = 11888.8512 kcal/mol (11878.3829 without restraints) Performing minimization step: 1199. Total energy = 11882.6888 kcal/mol (11872.2232 without restraints) Performing minimization step: 1200. Total energy = 11876.5337 kcal/mol (11866.0707 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 11870.3858 kcal/mol (11859.9256 without restraints) Performing minimization step: 1202. Total energy = 11864.2450 kcal/mol (11853.7872 without restraints) Performing minimization step: 1203. Total energy = 11858.1110 kcal/mol (11847.6559 without restraints) Performing minimization step: 1204. Total energy = 11851.9844 kcal/mol (11841.5319 without restraints) Performing minimization step: 1205. Total energy = 11845.8652 kcal/mol (11835.4153 without restraints) Performing minimization step: 1206. Total energy = 11839.7530 kcal/mol (11829.3056 without restraints) Performing minimization step: 1207. Total energy = 11833.6475 kcal/mol (11823.2026 without restraints) Performing minimization step: 1208. Total energy = 11827.5490 kcal/mol (11817.1069 without restraints) Performing minimization step: 1209. Total energy = 11821.4581 kcal/mol (11811.0186 without restraints) Performing minimization step: 1210. Total energy = 11815.3746 kcal/mol (11804.9377 without restraints) Performing minimization step: 1211. Total energy = 11809.2981 kcal/mol (11798.8638 without restraints) Performing minimization step: 1212. Total energy = 11803.2285 kcal/mol (11792.7968 without restraints) Performing minimization step: 1213. Total energy = 11797.1659 kcal/mol (11786.7368 without restraints) Performing minimization step: 1214. Total energy = 11791.1104 kcal/mol (11780.6839 without restraints) Performing minimization step: 1215. Total energy = 11785.0620 kcal/mol (11774.6381 without restraints) Performing minimization step: 1216. Total energy = 11779.0206 kcal/mol (11768.5994 without restraints) Performing minimization step: 1217. Total energy = 11772.9863 kcal/mol (11762.5676 without restraints) Performing minimization step: 1218. Total energy = 11766.9587 kcal/mol (11756.5425 without restraints) Performing minimization step: 1219. Total energy = 11760.9381 kcal/mol (11750.5245 without restraints) Performing minimization step: 1220. Total energy = 11754.9250 kcal/mol (11744.5140 without restraints) Performing minimization step: 1221. Total energy = 11748.9191 kcal/mol (11738.5107 without restraints) Performing minimization step: 1222. Total energy = 11742.9197 kcal/mol (11732.5139 without restraints) Performing minimization step: 1223. Total energy = 11736.9276 kcal/mol (11726.5244 without restraints) Performing minimization step: 1224. Total energy = 11730.9421 kcal/mol (11720.5415 without restraints) Performing minimization step: 1225. Total energy = 11724.9636 kcal/mol (11714.5655 without restraints) Performing minimization step: 1226. Total energy = 11718.9920 kcal/mol (11708.5966 without restraints) Performing minimization step: 1227. Total energy = 11713.0273 kcal/mol (11702.6344 without restraints) Performing minimization step: 1228. Total energy = 11707.0695 kcal/mol (11696.6793 without restraints) Performing minimization step: 1229. Total energy = 11701.1184 kcal/mol (11690.7307 without restraints) Performing minimization step: 1230. Total energy = 11695.1742 kcal/mol (11684.7891 without restraints) Performing minimization step: 1231. Total energy = 11689.2368 kcal/mol (11678.8542 without restraints) Performing minimization step: 1232. Total energy = 11683.3065 kcal/mol (11672.9265 without restraints) Performing minimization step: 1233. Total energy = 11677.3833 kcal/mol (11667.0060 without restraints) Performing minimization step: 1234. Total energy = 11671.4668 kcal/mol (11661.0919 without restraints) Performing minimization step: 1235. Total energy = 11665.5573 kcal/mol (11655.1852 without restraints) Performing minimization step: 1236. Total energy = 11659.6543 kcal/mol (11649.2846 without restraints) Performing minimization step: 1237. Total energy = 11653.7580 kcal/mol (11643.3908 without restraints) Performing minimization step: 1238. Total energy = 11647.8687 kcal/mol (11637.5041 without restraints) Performing minimization step: 1239. Total energy = 11641.9859 kcal/mol (11631.6239 without restraints) Performing minimization step: 1240. Total energy = 11636.1103 kcal/mol (11625.7509 without restraints) Performing minimization step: 1241. Total energy = 11630.2413 kcal/mol (11619.8843 without restraints) Performing minimization step: 1242. Total energy = 11624.3786 kcal/mol (11614.0242 without restraints) Performing minimization step: 1243. Total energy = 11618.5228 kcal/mol (11608.1710 without restraints) Performing minimization step: 1244. Total energy = 11612.6737 kcal/mol (11602.3245 without restraints) Performing minimization step: 1245. Total energy = 11606.8319 kcal/mol (11596.4853 without restraints) Performing minimization step: 1246. Total energy = 11600.9962 kcal/mol (11590.6520 without restraints) Performing minimization step: 1247. Total energy = 11595.1672 kcal/mol (11584.8256 without restraints) Performing minimization step: 1248. Total energy = 11589.3449 kcal/mol (11579.0059 without restraints) Performing minimization step: 1249. Total energy = 11583.5297 kcal/mol (11573.1932 without restraints) Performing minimization step: 1250. Total energy = 11577.7208 kcal/mol (11567.3869 without restraints) Performing minimization step: 1251. Total energy = 11571.9184 kcal/mol (11561.5871 without restraints) Performing minimization step: 1252. Total energy = 11566.1228 kcal/mol (11555.7940 without restraints) Performing minimization step: 1253. Total energy = 11560.3335 kcal/mol (11550.0072 without restraints) Performing minimization step: 1254. Total energy = 11554.5511 kcal/mol (11544.2274 without restraints) Performing minimization step: 1255. Total energy = 11548.7754 kcal/mol (11538.4544 without restraints) Performing minimization step: 1256. Total energy = 11543.0065 kcal/mol (11532.6879 without restraints) Performing minimization step: 1257. Total energy = 11537.2438 kcal/mol (11526.9277 without restraints) Performing minimization step: 1258. Total energy = 11531.4872 kcal/mol (11521.1737 without restraints) Performing minimization step: 1259. Total energy = 11525.7380 kcal/mol (11515.4270 without restraints) Performing minimization step: 1260. Total energy = 11519.9951 kcal/mol (11509.6867 without restraints) Performing minimization step: 1261. Total energy = 11514.2581 kcal/mol (11503.9522 without restraints) Performing minimization step: 1262. Total energy = 11508.5283 kcal/mol (11498.2249 without restraints) Performing minimization step: 1263. Total energy = 11502.8049 kcal/mol (11492.5041 without restraints) Performing minimization step: 1264. Total energy = 11497.0883 kcal/mol (11486.7900 without restraints) Performing minimization step: 1265. Total energy = 11491.3781 kcal/mol (11481.0823 without restraints) Performing minimization step: 1266. Total energy = 11485.6742 kcal/mol (11475.3810 without restraints) Performing minimization step: 1267. Total energy = 11479.9772 kcal/mol (11469.6865 without restraints) Performing minimization step: 1268. Total energy = 11474.2863 kcal/mol (11463.9981 without restraints) Performing minimization step: 1269. Total energy = 11468.6016 kcal/mol (11458.3159 without restraints) Performing minimization step: 1270. Total energy = 11462.9232 kcal/mol (11452.6401 without restraints) Performing minimization step: 1271. Total energy = 11457.2518 kcal/mol (11446.9713 without restraints) Performing minimization step: 1272. Total energy = 11451.5872 kcal/mol (11441.3091 without restraints) Performing minimization step: 1273. Total energy = 11445.9287 kcal/mol (11435.6532 without restraints) Performing minimization step: 1274. Total energy = 11440.2764 kcal/mol (11430.0034 without restraints) Performing minimization step: 1275. Total energy = 11434.6305 kcal/mol (11424.3599 without restraints) Performing minimization step: 1276. Total energy = 11428.9906 kcal/mol (11418.7227 without restraints) Performing minimization step: 1277. Total energy = 11423.3576 kcal/mol (11413.0922 without restraints) Performing minimization step: 1278. Total energy = 11417.7309 kcal/mol (11407.4679 without restraints) Performing minimization step: 1279. Total energy = 11412.1101 kcal/mol (11401.8497 without restraints) Performing minimization step: 1280. Total energy = 11406.4958 kcal/mol (11396.2379 without restraints) Performing minimization step: 1281. Total energy = 11400.8880 kcal/mol (11390.6327 without restraints) Performing minimization step: 1282. Total energy = 11395.2866 kcal/mol (11385.0340 without restraints) Performing minimization step: 1283. Total energy = 11389.6918 kcal/mol (11379.4416 without restraints) Performing minimization step: 1284. Total energy = 11384.1031 kcal/mol (11373.8553 without restraints) Performing minimization step: 1285. Total energy = 11378.5203 kcal/mol (11368.2751 without restraints) Performing minimization step: 1286. Total energy = 11372.9445 kcal/mol (11362.7017 without restraints) Performing minimization step: 1287. Total energy = 11367.3748 kcal/mol (11357.1348 without restraints) Performing minimization step: 1288. Total energy = 11361.8112 kcal/mol (11351.5733 without restraints) Performing minimization step: 1289. Total energy = 11356.2538 kcal/mol (11346.0186 without restraints) Performing minimization step: 1290. Total energy = 11350.7025 kcal/mol (11340.4698 without restraints) Performing minimization step: 1291. Total energy = 11345.1577 kcal/mol (11334.9274 without restraints) Performing minimization step: 1292. Total energy = 11339.6188 kcal/mol (11329.3911 without restraints) Performing minimization step: 1293. Total energy = 11334.0859 kcal/mol (11323.8607 without restraints) Performing minimization step: 1294. Total energy = 11328.5596 kcal/mol (11318.3369 without restraints) Performing minimization step: 1295. Total energy = 11323.0396 kcal/mol (11312.8194 without restraints) Performing minimization step: 1296. Total energy = 11317.5258 kcal/mol (11307.3081 without restraints) Performing minimization step: 1297. Total energy = 11312.0182 kcal/mol (11301.8030 without restraints) Performing minimization step: 1298. Total energy = 11306.5167 kcal/mol (11296.3041 without restraints) Performing minimization step: 1299. Total energy = 11301.0213 kcal/mol (11290.8111 without restraints) Performing minimization step: 1300. Total energy = 11295.5321 kcal/mol (11285.3245 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 11290.0492 kcal/mol (11279.8440 without restraints) Performing minimization step: 1302. Total energy = 11284.5725 kcal/mol (11274.3699 without restraints) Performing minimization step: 1303. Total energy = 11279.1019 kcal/mol (11268.9017 without restraints) Performing minimization step: 1304. Total energy = 11273.6371 kcal/mol (11263.4396 without restraints) Performing minimization step: 1305. Total energy = 11268.1788 kcal/mol (11257.9836 without restraints) Performing minimization step: 1306. Total energy = 11262.7265 kcal/mol (11252.5338 without restraints) Performing minimization step: 1307. Total energy = 11257.2802 kcal/mol (11247.0900 without restraints) Performing minimization step: 1308. Total energy = 11251.8400 kcal/mol (11241.6523 without restraints) Performing minimization step: 1309. Total energy = 11246.4060 kcal/mol (11236.2208 without restraints) Performing minimization step: 1310. Total energy = 11240.9779 kcal/mol (11230.7952 without restraints) Performing minimization step: 1311. Total energy = 11235.5559 kcal/mol (11225.3757 without restraints) Performing minimization step: 1312. Total energy = 11230.1399 kcal/mol (11219.9622 without restraints) Performing minimization step: 1313. Total energy = 11224.7300 kcal/mol (11214.5546 without restraints) Performing minimization step: 1314. Total energy = 11219.3261 kcal/mol (11209.1534 without restraints) Performing minimization step: 1315. Total energy = 11213.9283 kcal/mol (11203.7581 without restraints) Performing minimization step: 1316. Total energy = 11208.5369 kcal/mol (11198.3691 without restraints) Performing minimization step: 1317. Total energy = 11203.1510 kcal/mol (11192.9857 without restraints) Performing minimization step: 1318. Total energy = 11197.7712 kcal/mol (11187.6084 without restraints) Performing minimization step: 1319. Total energy = 11192.3980 kcal/mol (11182.2376 without restraints) Performing minimization step: 1320. Total energy = 11187.0309 kcal/mol (11176.8730 without restraints) Performing minimization step: 1321. Total energy = 11181.6693 kcal/mol (11171.5139 without restraints) Performing minimization step: 1322. Total energy = 11176.3133 kcal/mol (11166.1604 without restraints) Performing minimization step: 1323. Total energy = 11170.9631 kcal/mol (11160.8126 without restraints) Performing minimization step: 1324. Total energy = 11165.6190 kcal/mol (11155.4711 without restraints) Performing minimization step: 1325. Total energy = 11160.2811 kcal/mol (11150.1356 without restraints) Performing minimization step: 1326. Total energy = 11154.9488 kcal/mol (11144.8058 without restraints) Performing minimization step: 1327. Total energy = 11149.6227 kcal/mol (11139.4822 without restraints) Performing minimization step: 1328. Total energy = 11144.3027 kcal/mol (11134.1645 without restraints) Performing minimization step: 1329. Total energy = 11138.9880 kcal/mol (11128.8525 without restraints) Performing minimization step: 1330. Total energy = 11133.6795 kcal/mol (11123.5464 without restraints) Performing minimization step: 1331. Total energy = 11128.3770 kcal/mol (11118.2465 without restraints) Performing minimization step: 1332. Total energy = 11123.0805 kcal/mol (11112.9524 without restraints) Performing minimization step: 1333. Total energy = 11117.7899 kcal/mol (11107.6644 without restraints) Performing minimization step: 1334. Total energy = 11112.5045 kcal/mol (11102.3813 without restraints) Performing minimization step: 1335. Total energy = 11107.2257 kcal/mol (11097.1051 without restraints) Performing minimization step: 1336. Total energy = 11101.9525 kcal/mol (11091.8343 without restraints) Performing minimization step: 1337. Total energy = 11096.6853 kcal/mol (11086.5696 without restraints) Performing minimization step: 1338. Total energy = 11091.4231 kcal/mol (11081.3098 without restraints) Performing minimization step: 1339. Total energy = 11086.1669 kcal/mol (11076.0561 without restraints) Performing minimization step: 1340. Total energy = 11080.9165 kcal/mol (11070.8081 without restraints) Performing minimization step: 1341. Total energy = 11075.6723 kcal/mol (11065.5664 without restraints) Performing minimization step: 1342. Total energy = 11070.4334 kcal/mol (11060.3299 without restraints) Performing minimization step: 1343. Total energy = 11065.2006 kcal/mol (11055.0996 without restraints) Performing minimization step: 1344. Total energy = 11059.9735 kcal/mol (11049.8750 without restraints) Performing minimization step: 1345. Total energy = 11054.7528 kcal/mol (11044.6568 without restraints) Performing minimization step: 1346. Total energy = 11049.5374 kcal/mol (11039.4439 without restraints) Performing minimization step: 1347. Total energy = 11044.3279 kcal/mol (11034.2367 without restraints) Performing minimization step: 1348. Total energy = 11039.1238 kcal/mol (11029.0351 without restraints) Performing minimization step: 1349. Total energy = 11033.9255 kcal/mol (11023.8393 without restraints) Performing minimization step: 1350. Total energy = 11028.7330 kcal/mol (11018.6492 without restraints) Performing minimization step: 1351. Total energy = 11023.5462 kcal/mol (11013.4650 without restraints) Performing minimization step: 1352. Total energy = 11018.3650 kcal/mol (11008.2860 without restraints) Performing minimization step: 1353. Total energy = 11013.1894 kcal/mol (11003.1130 without restraints) Performing minimization step: 1354. Total energy = 11008.0197 kcal/mol (10997.9457 without restraints) Performing minimization step: 1355. Total energy = 11002.8557 kcal/mol (10992.7843 without restraints) Performing minimization step: 1356. Total energy = 10997.6974 kcal/mol (10987.6283 without restraints) Performing minimization step: 1357. Total energy = 10992.5443 kcal/mol (10982.4777 without restraints) Performing minimization step: 1358. Total energy = 10987.3973 kcal/mol (10977.3332 without restraints) Performing minimization step: 1359. Total energy = 10982.2560 kcal/mol (10972.1943 without restraints) Performing minimization step: 1360. Total energy = 10977.1202 kcal/mol (10967.0609 without restraints) Performing minimization step: 1361. Total energy = 10971.9899 kcal/mol (10961.9331 without restraints) Performing minimization step: 1362. Total energy = 10966.8649 kcal/mol (10956.8105 without restraints) Performing minimization step: 1363. Total energy = 10961.7458 kcal/mol (10951.6939 without restraints) Performing minimization step: 1364. Total energy = 10956.6323 kcal/mol (10946.5827 without restraints) Performing minimization step: 1365. Total energy = 10951.5245 kcal/mol (10941.4776 without restraints) Performing minimization step: 1366. Total energy = 10946.4226 kcal/mol (10936.3780 without restraints) Performing minimization step: 1367. Total energy = 10941.3259 kcal/mol (10931.2838 without restraints) Performing minimization step: 1368. Total energy = 10936.2347 kcal/mol (10926.1950 without restraints) Performing minimization step: 1369. Total energy = 10931.1494 kcal/mol (10921.1122 without restraints) Performing minimization step: 1370. Total energy = 10926.0696 kcal/mol (10916.0348 without restraints) Performing minimization step: 1371. Total energy = 10920.9949 kcal/mol (10910.9624 without restraints) Performing minimization step: 1372. Total energy = 10915.9258 kcal/mol (10905.8959 without restraints) Performing minimization step: 1373. Total energy = 10910.8627 kcal/mol (10900.8353 without restraints) Performing minimization step: 1374. Total energy = 10905.8047 kcal/mol (10895.7797 without restraints) Performing minimization step: 1375. Total energy = 10900.7522 kcal/mol (10890.7296 without restraints) Performing minimization step: 1376. Total energy = 10895.7058 kcal/mol (10885.6856 without restraints) Performing minimization step: 1377. Total energy = 10890.6644 kcal/mol (10880.6466 without restraints) Performing minimization step: 1378. Total energy = 10885.6282 kcal/mol (10875.6130 without restraints) Performing minimization step: 1379. Total energy = 10880.5980 kcal/mol (10870.5852 without restraints) Performing minimization step: 1380. Total energy = 10875.5733 kcal/mol (10865.5630 without restraints) Performing minimization step: 1381. Total energy = 10870.5540 kcal/mol (10860.5461 without restraints) Performing minimization step: 1382. Total energy = 10865.5399 kcal/mol (10855.5344 without restraints) Performing minimization step: 1383. Total energy = 10860.5316 kcal/mol (10850.5287 without restraints) Performing minimization step: 1384. Total energy = 10855.5290 kcal/mol (10845.5284 without restraints) Performing minimization step: 1385. Total energy = 10850.5315 kcal/mol (10840.5333 without restraints) Performing minimization step: 1386. Total energy = 10845.5392 kcal/mol (10835.5436 without restraints) Performing minimization step: 1387. Total energy = 10840.5527 kcal/mol (10830.5594 without restraints) Performing minimization step: 1388. Total energy = 10835.5712 kcal/mol (10825.5801 without restraints) Performing minimization step: 1389. Total energy = 10830.5951 kcal/mol (10820.6066 without restraints) Performing minimization step: 1390. Total energy = 10825.6255 kcal/mol (10815.6394 without restraints) Performing minimization step: 1391. Total energy = 10820.6601 kcal/mol (10810.6763 without restraints) Performing minimization step: 1392. Total energy = 10815.7002 kcal/mol (10805.7190 without restraints) Performing minimization step: 1393. Total energy = 10810.7455 kcal/mol (10800.7667 without restraints) Performing minimization step: 1394. Total energy = 10805.7965 kcal/mol (10795.8201 without restraints) Performing minimization step: 1395. Total energy = 10800.8527 kcal/mol (10790.8788 without restraints) Performing minimization step: 1396. Total energy = 10795.9141 kcal/mol (10785.9426 without restraints) Performing minimization step: 1397. Total energy = 10790.9809 kcal/mol (10781.0117 without restraints) Performing minimization step: 1398. Total energy = 10786.0531 kcal/mol (10776.0865 without restraints) Performing minimization step: 1399. Total energy = 10781.1310 kcal/mol (10771.1668 without restraints) Performing minimization step: 1400. Total energy = 10776.2141 kcal/mol (10766.2523 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 10771.3027 kcal/mol (10761.3433 without restraints) Performing minimization step: 1402. Total energy = 10766.3966 kcal/mol (10756.4397 without restraints) Performing minimization step: 1403. Total energy = 10761.4956 kcal/mol (10751.5410 without restraints) Performing minimization step: 1404. Total energy = 10756.5998 kcal/mol (10746.6476 without restraints) Performing minimization step: 1405. Total energy = 10751.7094 kcal/mol (10741.7596 without restraints) Performing minimization step: 1406. Total energy = 10746.8242 kcal/mol (10736.8769 without restraints) Performing minimization step: 1407. Total energy = 10741.9448 kcal/mol (10732.0000 without restraints) Performing minimization step: 1408. Total energy = 10737.0703 kcal/mol (10727.1278 without restraints) Performing minimization step: 1409. Total energy = 10732.2010 kcal/mol (10722.2610 without restraints) Performing minimization step: 1410. Total energy = 10727.3369 kcal/mol (10717.3993 without restraints) Performing minimization step: 1411. Total energy = 10722.4784 kcal/mol (10712.5433 without restraints) Performing minimization step: 1412. Total energy = 10717.6249 kcal/mol (10707.6920 without restraints) Performing minimization step: 1413. Total energy = 10712.7762 kcal/mol (10702.8458 without restraints) Performing minimization step: 1414. Total energy = 10707.9331 kcal/mol (10698.0052 without restraints) Performing minimization step: 1415. Total energy = 10703.0950 kcal/mol (10693.1695 without restraints) Performing minimization step: 1416. Total energy = 10698.2622 kcal/mol (10688.3391 without restraints) Performing minimization step: 1417. Total energy = 10693.4346 kcal/mol (10683.5139 without restraints) Performing minimization step: 1418. Total energy = 10688.6120 kcal/mol (10678.6936 without restraints) Performing minimization step: 1419. Total energy = 10683.7947 kcal/mol (10673.8788 without restraints) Performing minimization step: 1420. Total energy = 10678.9827 kcal/mol (10669.0692 without restraints) Performing minimization step: 1421. Total energy = 10674.1758 kcal/mol (10664.2647 without restraints) Performing minimization step: 1422. Total energy = 10669.3745 kcal/mol (10659.4658 without restraints) Performing minimization step: 1423. Total energy = 10664.5777 kcal/mol (10654.6714 without restraints) Performing minimization step: 1424. Total energy = 10659.7863 kcal/mol (10649.8824 without restraints) Performing minimization step: 1425. Total energy = 10655.0001 kcal/mol (10645.0986 without restraints) Performing minimization step: 1426. Total energy = 10650.2189 kcal/mol (10640.3197 without restraints) Performing minimization step: 1427. Total energy = 10645.4428 kcal/mol (10635.5463 without restraints) Performing minimization step: 1428. Total energy = 10640.6722 kcal/mol (10630.7779 without restraints) Performing minimization step: 1429. Total energy = 10635.9064 kcal/mol (10626.0145 without restraints) Performing minimization step: 1430. Total energy = 10631.1456 kcal/mol (10621.2562 without restraints) Performing minimization step: 1431. Total energy = 10626.3902 kcal/mol (10616.5031 without restraints) Performing minimization step: 1432. Total energy = 10621.6396 kcal/mol (10611.7550 without restraints) Performing minimization step: 1433. Total energy = 10616.8940 kcal/mol (10607.0117 without restraints) Performing minimization step: 1434. Total energy = 10612.1539 kcal/mol (10602.2742 without restraints) Performing minimization step: 1435. Total energy = 10607.4187 kcal/mol (10597.5413 without restraints) Performing minimization step: 1436. Total energy = 10602.6883 kcal/mol (10592.8132 without restraints) Performing minimization step: 1437. Total energy = 10597.9630 kcal/mol (10588.0903 without restraints) Performing minimization step: 1438. Total energy = 10593.2428 kcal/mol (10583.3725 without restraints) Performing minimization step: 1439. Total energy = 10588.5280 kcal/mol (10578.6601 without restraints) Performing minimization step: 1440. Total energy = 10583.8180 kcal/mol (10573.9526 without restraints) Performing minimization step: 1441. Total energy = 10579.1126 kcal/mol (10569.2493 without restraints) Performing minimization step: 1442. Total energy = 10574.4123 kcal/mol (10564.5516 without restraints) Performing minimization step: 1443. Total energy = 10569.7172 kcal/mol (10559.8589 without restraints) Performing minimization step: 1444. Total energy = 10565.0272 kcal/mol (10555.1713 without restraints) Performing minimization step: 1445. Total energy = 10560.3419 kcal/mol (10550.4884 without restraints) Performing minimization step: 1446. Total energy = 10555.6616 kcal/mol (10545.8104 without restraints) Performing minimization step: 1447. Total energy = 10550.9863 kcal/mol (10541.1376 without restraints) Performing minimization step: 1448. Total energy = 10546.3162 kcal/mol (10536.4699 without restraints) Performing minimization step: 1449. Total energy = 10541.6510 kcal/mol (10531.8071 without restraints) Performing minimization step: 1450. Total energy = 10536.9902 kcal/mol (10527.1487 without restraints) Performing minimization step: 1451. Total energy = 10532.3353 kcal/mol (10522.4962 without restraints) Performing minimization step: 1452. Total energy = 10527.6845 kcal/mol (10517.8477 without restraints) Performing minimization step: 1453. Total energy = 10523.0388 kcal/mol (10513.2044 without restraints) Performing minimization step: 1454. Total energy = 10518.3989 kcal/mol (10508.5672 without restraints) Performing minimization step: 1455. Total energy = 10513.7638 kcal/mol (10503.9342 without restraints) Performing minimization step: 1456. Total energy = 10509.1333 kcal/mol (10499.3061 without restraints) Performing minimization step: 1457. Total energy = 10504.5078 kcal/mol (10494.6831 without restraints) Performing minimization step: 1458. Total energy = 10499.8869 kcal/mol (10490.0645 without restraints) Performing minimization step: 1459. Total energy = 10495.2711 kcal/mol (10485.4511 without restraints) Performing minimization step: 1460. Total energy = 10490.6604 kcal/mol (10480.8428 without restraints) Performing minimization step: 1461. Total energy = 10486.0544 kcal/mol (10476.2392 without restraints) Performing minimization step: 1462. Total energy = 10481.4534 kcal/mol (10471.6405 without restraints) Performing minimization step: 1463. Total energy = 10476.8569 kcal/mol (10467.0463 without restraints) Performing minimization step: 1464. Total energy = 10472.2652 kcal/mol (10462.4571 without restraints) Performing minimization step: 1465. Total energy = 10467.6783 kcal/mol (10457.8726 without restraints) Performing minimization step: 1466. Total energy = 10463.0964 kcal/mol (10453.2930 without restraints) Performing minimization step: 1467. Total energy = 10458.5192 kcal/mol (10448.7182 without restraints) Performing minimization step: 1468. Total energy = 10453.9469 kcal/mol (10444.1483 without restraints) Performing minimization step: 1469. Total energy = 10449.3791 kcal/mol (10439.5828 without restraints) Performing minimization step: 1470. Total energy = 10444.8161 kcal/mol (10435.0223 without restraints) Performing minimization step: 1471. Total energy = 10440.2582 kcal/mol (10430.4668 without restraints) Performing minimization step: 1472. Total energy = 10435.7051 kcal/mol (10425.9161 without restraints) Performing minimization step: 1473. Total energy = 10431.1569 kcal/mol (10421.3702 without restraints) Performing minimization step: 1474. Total energy = 10426.6134 kcal/mol (10416.8290 without restraints) Performing minimization step: 1475. Total energy = 10422.0744 kcal/mol (10412.2925 without restraints) Performing minimization step: 1476. Total energy = 10417.5402 kcal/mol (10407.7607 without restraints) Performing minimization step: 1477. Total energy = 10413.0111 kcal/mol (10403.2339 without restraints) Performing minimization step: 1478. Total energy = 10408.4865 kcal/mol (10398.7117 without restraints) Performing minimization step: 1479. Total energy = 10403.9668 kcal/mol (10394.1943 without restraints) Performing minimization step: 1480. Total energy = 10399.4519 kcal/mol (10389.6818 without restraints) Performing minimization step: 1481. Total energy = 10394.9415 kcal/mol (10385.1739 without restraints) Performing minimization step: 1482. Total energy = 10390.4361 kcal/mol (10380.6708 without restraints) Performing minimization step: 1483. Total energy = 10385.9356 kcal/mol (10376.1727 without restraints) Performing minimization step: 1484. Total energy = 10381.4395 kcal/mol (10371.6788 without restraints) Performing minimization step: 1485. Total energy = 10376.9483 kcal/mol (10367.1902 without restraints) Performing minimization step: 1486. Total energy = 10372.4620 kcal/mol (10362.7061 without restraints) Performing minimization step: 1487. Total energy = 10367.9799 kcal/mol (10358.2265 without restraints) Performing minimization step: 1488. Total energy = 10363.5033 kcal/mol (10353.7523 without restraints) Performing minimization step: 1489. Total energy = 10359.0307 kcal/mol (10349.2820 without restraints) Performing minimization step: 1490. Total energy = 10354.5630 kcal/mol (10344.8167 without restraints) Performing minimization step: 1491. Total energy = 10350.0998 kcal/mol (10340.3559 without restraints) Performing minimization step: 1492. Total energy = 10345.6414 kcal/mol (10335.8998 without restraints) Performing minimization step: 1493. Total energy = 10341.1878 kcal/mol (10331.4486 without restraints) Performing minimization step: 1494. Total energy = 10336.7385 kcal/mol (10327.0017 without restraints) Performing minimization step: 1495. Total energy = 10332.2940 kcal/mol (10322.5596 without restraints) Performing minimization step: 1496. Total energy = 10327.8543 kcal/mol (10318.1222 without restraints) Performing minimization step: 1497. Total energy = 10323.4189 kcal/mol (10313.6892 without restraints) Performing minimization step: 1498. Total energy = 10318.9880 kcal/mol (10309.2606 without restraints) Performing minimization step: 1499. Total energy = 10314.5618 kcal/mol (10304.8367 without restraints) Performing minimization step: 1500. Total energy = 10310.1402 kcal/mol (10300.4175 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 10305.7233 kcal/mol (10296.0030 without restraints) Performing minimization step: 1502. Total energy = 10301.3108 kcal/mol (10291.5928 without restraints) Performing minimization step: 1503. Total energy = 10296.9033 kcal/mol (10287.1877 without restraints) Performing minimization step: 1504. Total energy = 10292.4994 kcal/mol (10282.7861 without restraints) Performing minimization step: 1505. Total energy = 10288.1008 kcal/mol (10278.3897 without restraints) Performing minimization step: 1506. Total energy = 10283.7063 kcal/mol (10273.9978 without restraints) Performing minimization step: 1507. Total energy = 10279.3171 kcal/mol (10269.6109 without restraints) Performing minimization step: 1508. Total energy = 10274.9321 kcal/mol (10265.2283 without restraints) Performing minimization step: 1509. Total energy = 10270.5518 kcal/mol (10260.8503 without restraints) Performing minimization step: 1510. Total energy = 10266.1767 kcal/mol (10256.4777 without restraints) Performing minimization step: 1511. Total energy = 10261.8055 kcal/mol (10252.1088 without restraints) Performing minimization step: 1512. Total energy = 10257.4386 kcal/mol (10247.7443 without restraints) Performing minimization step: 1513. Total energy = 10253.0760 kcal/mol (10243.3840 without restraints) Performing minimization step: 1514. Total energy = 10248.7181 kcal/mol (10239.0286 without restraints) Performing minimization step: 1515. Total energy = 10244.3648 kcal/mol (10234.6775 without restraints) Performing minimization step: 1516. Total energy = 10240.0165 kcal/mol (10230.3315 without restraints) Performing minimization step: 1517. Total energy = 10235.6720 kcal/mol (10225.9894 without restraints) Performing minimization step: 1518. Total energy = 10231.3325 kcal/mol (10221.6523 without restraints) Performing minimization step: 1519. Total energy = 10226.9974 kcal/mol (10217.3195 without restraints) Performing minimization step: 1520. Total energy = 10222.6665 kcal/mol (10212.9909 without restraints) Performing minimization step: 1521. Total energy = 10218.3400 kcal/mol (10208.6668 without restraints) Performing minimization step: 1522. Total energy = 10214.0178 kcal/mol (10204.3470 without restraints) Performing minimization step: 1523. Total energy = 10209.7005 kcal/mol (10200.0322 without restraints) Performing minimization step: 1524. Total energy = 10205.3878 kcal/mol (10195.7217 without restraints) Performing minimization step: 1525. Total energy = 10201.0792 kcal/mol (10191.4154 without restraints) Performing minimization step: 1526. Total energy = 10196.7747 kcal/mol (10187.1133 without restraints) Performing minimization step: 1527. Total energy = 10192.4749 kcal/mol (10182.8159 without restraints) Performing minimization step: 1528. Total energy = 10188.1798 kcal/mol (10178.5232 without restraints) Performing minimization step: 1529. Total energy = 10183.8893 kcal/mol (10174.2350 without restraints) Performing minimization step: 1530. Total energy = 10179.6027 kcal/mol (10169.9507 without restraints) Performing minimization step: 1531. Total energy = 10175.3205 kcal/mol (10165.6708 without restraints) Performing minimization step: 1532. Total energy = 10171.0426 kcal/mol (10161.3953 without restraints) Performing minimization step: 1533. Total energy = 10166.7693 kcal/mol (10157.1243 without restraints) Performing minimization step: 1534. Total energy = 10162.5001 kcal/mol (10152.8574 without restraints) Performing minimization step: 1535. Total energy = 10158.2353 kcal/mol (10148.5950 without restraints) Performing minimization step: 1536. Total energy = 10153.9746 kcal/mol (10144.3367 without restraints) Performing minimization step: 1537. Total energy = 10149.7187 kcal/mol (10140.0832 without restraints) Performing minimization step: 1538. Total energy = 10145.4671 kcal/mol (10135.8338 without restraints) Performing minimization step: 1539. Total energy = 10141.2196 kcal/mol (10131.5887 without restraints) Performing minimization step: 1540. Total energy = 10136.9769 kcal/mol (10127.3484 without restraints) Performing minimization step: 1541. Total energy = 10132.7381 kcal/mol (10123.1118 without restraints) Performing minimization step: 1542. Total energy = 10128.5037 kcal/mol (10118.8798 without restraints) Performing minimization step: 1543. Total energy = 10124.2737 kcal/mol (10114.6521 without restraints) Performing minimization step: 1544. Total energy = 10120.0478 kcal/mol (10110.4286 without restraints) Performing minimization step: 1545. Total energy = 10115.8264 kcal/mol (10106.2095 without restraints) Performing minimization step: 1546. Total energy = 10111.6092 kcal/mol (10101.9947 without restraints) Performing minimization step: 1547. Total energy = 10107.3960 kcal/mol (10097.7838 without restraints) Performing minimization step: 1548. Total energy = 10103.1874 kcal/mol (10093.5775 without restraints) Performing minimization step: 1549. Total energy = 10098.9831 kcal/mol (10089.3755 without restraints) Performing minimization step: 1550. Total energy = 10094.7834 kcal/mol (10085.1782 without restraints) Performing minimization step: 1551. Total energy = 10090.5875 kcal/mol (10080.9846 without restraints) Performing minimization step: 1552. Total energy = 10086.3957 kcal/mol (10076.7951 without restraints) Performing minimization step: 1553. Total energy = 10082.2083 kcal/mol (10072.6101 without restraints) Performing minimization step: 1554. Total energy = 10078.0254 kcal/mol (10068.4296 without restraints) Performing minimization step: 1555. Total energy = 10073.8463 kcal/mol (10064.2528 without restraints) Performing minimization step: 1556. Total energy = 10069.6716 kcal/mol (10060.0804 without restraints) Performing minimization step: 1557. Total energy = 10065.5011 kcal/mol (10055.9124 without restraints) Performing minimization step: 1558. Total energy = 10061.3352 kcal/mol (10051.7486 without restraints) Performing minimization step: 1559. Total energy = 10057.1730 kcal/mol (10047.5888 without restraints) Performing minimization step: 1560. Total energy = 10053.0152 kcal/mol (10043.4334 without restraints) Performing minimization step: 1561. Total energy = 10048.8618 kcal/mol (10039.2824 without restraints) Performing minimization step: 1562. Total energy = 10044.7127 kcal/mol (10035.1355 without restraints) Performing minimization step: 1563. Total energy = 10040.5674 kcal/mol (10030.9925 without restraints) Performing minimization step: 1564. Total energy = 10036.4263 kcal/mol (10026.8537 without restraints) Performing minimization step: 1565. Total energy = 10032.2894 kcal/mol (10022.7192 without restraints) Performing minimization step: 1566. Total energy = 10028.1565 kcal/mol (10018.5886 without restraints) Performing minimization step: 1567. Total energy = 10024.0278 kcal/mol (10014.4622 without restraints) Performing minimization step: 1568. Total energy = 10019.9039 kcal/mol (10010.3409 without restraints) Performing minimization step: 1569. Total energy = 10015.7841 kcal/mol (10006.2231 without restraints) Performing minimization step: 1570. Total energy = 10011.6676 kcal/mol (10002.1090 without restraints) Performing minimization step: 1571. Total energy = 10007.5552 kcal/mol (9997.9988 without restraints) Performing minimization step: 1572. Total energy = 10003.4470 kcal/mol (9993.8931 without restraints) Performing minimization step: 1573. Total energy = 9999.3435 kcal/mol (9989.7919 without restraints) Performing minimization step: 1574. Total energy = 9995.2431 kcal/mol (9985.6938 without restraints) Performing minimization step: 1575. Total energy = 9991.1472 kcal/mol (9981.6002 without restraints) Performing minimization step: 1576. Total energy = 9987.0552 kcal/mol (9977.5105 without restraints) Performing minimization step: 1577. Total energy = 9982.9669 kcal/mol (9973.4246 without restraints) Performing minimization step: 1578. Total energy = 9978.8833 kcal/mol (9969.3434 without restraints) Performing minimization step: 1579. Total energy = 9974.8038 kcal/mol (9965.2661 without restraints) Performing minimization step: 1580. Total energy = 9970.7285 kcal/mol (9961.1931 without restraints) Performing minimization step: 1581. Total energy = 9966.6570 kcal/mol (9957.1239 without restraints) Performing minimization step: 1582. Total energy = 9962.5897 kcal/mol (9953.0590 without restraints) Performing minimization step: 1583. Total energy = 9958.5264 kcal/mol (9948.9979 without restraints) Performing minimization step: 1584. Total energy = 9954.4672 kcal/mol (9944.9412 without restraints) Performing minimization step: 1585. Total energy = 9950.4119 kcal/mol (9940.8881 without restraints) Performing minimization step: 1586. Total energy = 9946.3602 kcal/mol (9936.8387 without restraints) Performing minimization step: 1587. Total energy = 9942.3126 kcal/mol (9932.7935 without restraints) Performing minimization step: 1588. Total energy = 9938.2692 kcal/mol (9928.7522 without restraints) Performing minimization step: 1589. Total energy = 9934.2299 kcal/mol (9924.7153 without restraints) Performing minimization step: 1590. Total energy = 9930.1943 kcal/mol (9920.6820 without restraints) Performing minimization step: 1591. Total energy = 9926.1628 kcal/mol (9916.6529 without restraints) Performing minimization step: 1592. Total energy = 9922.1354 kcal/mol (9912.6278 without restraints) Performing minimization step: 1593. Total energy = 9918.1117 kcal/mol (9908.6064 without restraints) Performing minimization step: 1594. Total energy = 9914.0923 kcal/mol (9904.5894 without restraints) Performing minimization step: 1595. Total energy = 9910.0771 kcal/mol (9900.5767 without restraints) Performing minimization step: 1596. Total energy = 9906.0661 kcal/mol (9896.5677 without restraints) Performing minimization step: 1597. Total energy = 9902.0583 kcal/mol (9892.5621 without restraints) Performing minimization step: 1598. Total energy = 9898.0545 kcal/mol (9888.5607 without restraints) Performing minimization step: 1599. Total energy = 9894.0546 kcal/mol (9884.5632 without restraints) Performing minimization step: 1600. Total energy = 9890.0585 kcal/mol (9880.5694 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 9886.0669 kcal/mol (9876.5801 without restraints) Performing minimization step: 1602. Total energy = 9882.0784 kcal/mol (9872.5938 without restraints) Performing minimization step: 1603. Total energy = 9878.0941 kcal/mol (9868.6119 without restraints) Performing minimization step: 1604. Total energy = 9874.1140 kcal/mol (9864.6340 without restraints) Performing minimization step: 1605. Total energy = 9870.1371 kcal/mol (9860.6595 without restraints) Performing minimization step: 1606. Total energy = 9866.1644 kcal/mol (9856.6892 without restraints) Performing minimization step: 1607. Total energy = 9862.1958 kcal/mol (9852.7228 without restraints) Performing minimization step: 1608. Total energy = 9858.2307 kcal/mol (9848.7601 without restraints) Performing minimization step: 1609. Total energy = 9854.2696 kcal/mol (9844.8012 without restraints) Performing minimization step: 1610. Total energy = 9850.3128 kcal/mol (9840.8467 without restraints) Performing minimization step: 1611. Total energy = 9846.3597 kcal/mol (9836.8959 without restraints) Performing minimization step: 1612. Total energy = 9842.4096 kcal/mol (9832.9481 without restraints) Performing minimization step: 1613. Total energy = 9838.4642 kcal/mol (9829.0050 without restraints) Performing minimization step: 1614. Total energy = 9834.5225 kcal/mol (9825.0657 without restraints) Performing minimization step: 1615. Total energy = 9830.5844 kcal/mol (9821.1298 without restraints) Performing minimization step: 1616. Total energy = 9826.6502 kcal/mol (9817.1979 without restraints) Performing minimization step: 1617. Total energy = 9822.7197 kcal/mol (9813.2697 without restraints) Performing minimization step: 1618. Total energy = 9818.7931 kcal/mol (9809.3454 without restraints) Performing minimization step: 1619. Total energy = 9814.8711 kcal/mol (9805.4258 without restraints) Performing minimization step: 1620. Total energy = 9810.9525 kcal/mol (9801.5096 without restraints) Performing minimization step: 1621. Total energy = 9807.0376 kcal/mol (9797.5968 without restraints) Performing minimization step: 1622. Total energy = 9803.1264 kcal/mol (9793.6878 without restraints) Performing minimization step: 1623. Total energy = 9799.2186 kcal/mol (9789.7823 without restraints) Performing minimization step: 1624. Total energy = 9795.3149 kcal/mol (9785.8809 without restraints) Performing minimization step: 1625. Total energy = 9791.4149 kcal/mol (9781.9833 without restraints) Performing minimization step: 1626. Total energy = 9787.5185 kcal/mol (9778.0891 without restraints) Performing minimization step: 1627. Total energy = 9783.6254 kcal/mol (9774.1982 without restraints) Performing minimization step: 1628. Total energy = 9779.7365 kcal/mol (9770.3117 without restraints) Performing minimization step: 1629. Total energy = 9775.8515 kcal/mol (9766.4291 without restraints) Performing minimization step: 1630. Total energy = 9771.9701 kcal/mol (9762.5499 without restraints) Performing minimization step: 1631. Total energy = 9768.0925 kcal/mol (9758.6745 without restraints) Performing minimization step: 1632. Total energy = 9764.2183 kcal/mol (9754.8027 without restraints) Performing minimization step: 1633. Total energy = 9760.3479 kcal/mol (9750.9347 without restraints) Performing minimization step: 1634. Total energy = 9756.4809 kcal/mol (9747.0698 without restraints) Performing minimization step: 1635. Total energy = 9752.6182 kcal/mol (9743.2095 without restraints) Performing minimization step: 1636. Total energy = 9748.7588 kcal/mol (9739.3523 without restraints) Performing minimization step: 1637. Total energy = 9744.9030 kcal/mol (9735.4989 without restraints) Performing minimization step: 1638. Total energy = 9741.0509 kcal/mol (9731.6491 without restraints) Performing minimization step: 1639. Total energy = 9737.2026 kcal/mol (9727.8030 without restraints) Performing minimization step: 1640. Total energy = 9733.3577 kcal/mol (9723.9604 without restraints) Performing minimization step: 1641. Total energy = 9729.5164 kcal/mol (9720.1213 without restraints) Performing minimization step: 1642. Total energy = 9725.6791 kcal/mol (9716.2864 without restraints) Performing minimization step: 1643. Total energy = 9721.8457 kcal/mol (9712.4552 without restraints) Performing minimization step: 1644. Total energy = 9718.0150 kcal/mol (9708.6268 without restraints) Performing minimization step: 1645. Total energy = 9714.1883 kcal/mol (9704.8024 without restraints) Performing minimization step: 1646. Total energy = 9710.3652 kcal/mol (9700.9816 without restraints) Performing minimization step: 1647. Total energy = 9706.5461 kcal/mol (9697.1647 without restraints) Performing minimization step: 1648. Total energy = 9702.7304 kcal/mol (9693.3513 without restraints) Performing minimization step: 1649. Total energy = 9698.9181 kcal/mol (9689.5413 without restraints) Performing minimization step: 1650. Total energy = 9695.1093 kcal/mol (9685.7348 without restraints) Performing minimization step: 1651. Total energy = 9691.3040 kcal/mol (9681.9317 without restraints) Performing minimization step: 1652. Total energy = 9687.5024 kcal/mol (9678.1324 without restraints) Performing minimization step: 1653. Total energy = 9683.7041 kcal/mol (9674.3363 without restraints) Performing minimization step: 1654. Total energy = 9679.9096 kcal/mol (9670.5441 without restraints) Performing minimization step: 1655. Total energy = 9676.1188 kcal/mol (9666.7556 without restraints) Performing minimization step: 1656. Total energy = 9672.3313 kcal/mol (9662.9704 without restraints) Performing minimization step: 1657. Total energy = 9668.5474 kcal/mol (9659.1888 without restraints) Performing minimization step: 1658. Total energy = 9664.7673 kcal/mol (9655.4109 without restraints) Performing minimization step: 1659. Total energy = 9660.9906 kcal/mol (9651.6366 without restraints) Performing minimization step: 1660. Total energy = 9657.2173 kcal/mol (9647.8655 without restraints) Performing minimization step: 1661. Total energy = 9653.4474 kcal/mol (9644.0979 without restraints) Performing minimization step: 1662. Total energy = 9649.6817 kcal/mol (9640.3348 without restraints) Performing minimization step: 1663. Total energy = 9645.9188 kcal/mol (9636.5738 without restraints) Performing minimization step: 1664. Total energy = 9642.1595 kcal/mol (9632.8167 without restraints) Performing minimization step: 1665. Total energy = 9638.4036 kcal/mol (9629.0632 without restraints) Performing minimization step: 1666. Total energy = 9634.6512 kcal/mol (9625.3130 without restraints) Performing minimization step: 1667. Total energy = 9630.9020 kcal/mol (9621.5661 without restraints) Performing minimization step: 1668. Total energy = 9627.1565 kcal/mol (9617.8228 without restraints) Performing minimization step: 1669. Total energy = 9623.4143 kcal/mol (9614.0829 without restraints) Performing minimization step: 1670. Total energy = 9619.6754 kcal/mol (9610.3464 without restraints) Performing minimization step: 1671. Total energy = 9615.9401 kcal/mol (9606.6132 without restraints) Performing minimization step: 1672. Total energy = 9612.2083 kcal/mol (9602.8837 without restraints) Performing minimization step: 1673. Total energy = 9608.4796 kcal/mol (9599.1572 without restraints) Performing minimization step: 1674. Total energy = 9604.7544 kcal/mol (9595.4343 without restraints) Performing minimization step: 1675. Total energy = 9601.0328 kcal/mol (9591.7150 without restraints) Performing minimization step: 1676. Total energy = 9597.3146 kcal/mol (9587.9990 without restraints) Performing minimization step: 1677. Total energy = 9593.6000 kcal/mol (9584.2867 without restraints) Performing minimization step: 1678. Total energy = 9589.8883 kcal/mol (9580.5771 without restraints) Performing minimization step: 1679. Total energy = 9586.1804 kcal/mol (9576.8716 without restraints) Performing minimization step: 1680. Total energy = 9582.4760 kcal/mol (9573.1695 without restraints) Performing minimization step: 1681. Total energy = 9578.7748 kcal/mol (9569.4706 without restraints) Performing minimization step: 1682. Total energy = 9575.0767 kcal/mol (9565.7747 without restraints) Performing minimization step: 1683. Total energy = 9571.3825 kcal/mol (9562.0828 without restraints) Performing minimization step: 1684. Total energy = 9567.6910 kcal/mol (9558.3935 without restraints) Performing minimization step: 1685. Total energy = 9564.0029 kcal/mol (9554.7077 without restraints) Performing minimization step: 1686. Total energy = 9560.3184 kcal/mol (9551.0255 without restraints) Performing minimization step: 1687. Total energy = 9556.6372 kcal/mol (9547.3463 without restraints) Performing minimization step: 1688. Total energy = 9552.9590 kcal/mol (9543.6704 without restraints) Performing minimization step: 1689. Total energy = 9549.2843 kcal/mol (9539.9981 without restraints) Performing minimization step: 1690. Total energy = 9545.6133 kcal/mol (9536.3293 without restraints) Performing minimization step: 1691. Total energy = 9541.9454 kcal/mol (9532.6637 without restraints) Performing minimization step: 1692. Total energy = 9538.2809 kcal/mol (9529.0015 without restraints) Performing minimization step: 1693. Total energy = 9534.6193 kcal/mol (9525.3421 without restraints) Performing minimization step: 1694. Total energy = 9530.9610 kcal/mol (9521.6860 without restraints) Performing minimization step: 1695. Total energy = 9527.3065 kcal/mol (9518.0338 without restraints) Performing minimization step: 1696. Total energy = 9523.6548 kcal/mol (9514.3846 without restraints) Performing minimization step: 1697. Total energy = 9520.0067 kcal/mol (9510.7384 without restraints) Performing minimization step: 1698. Total energy = 9516.3616 kcal/mol (9507.0956 without restraints) Performing minimization step: 1699. Total energy = 9512.7196 kcal/mol (9503.4559 without restraints) Performing minimization step: 1700. Total energy = 9509.0810 kcal/mol (9499.8195 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 9505.4454 kcal/mol (9496.1861 without restraints) Performing minimization step: 1702. Total energy = 9501.8131 kcal/mol (9492.5561 without restraints) Performing minimization step: 1703. Total energy = 9498.1841 kcal/mol (9488.9293 without restraints) Performing minimization step: 1704. Total energy = 9494.5583 kcal/mol (9485.3058 without restraints) Performing minimization step: 1705. Total energy = 9490.9355 kcal/mol (9481.6852 without restraints) Performing minimization step: 1706. Total energy = 9487.3156 kcal/mol (9478.0676 without restraints) Performing minimization step: 1707. Total energy = 9483.6994 kcal/mol (9474.4536 without restraints) Performing minimization step: 1708. Total energy = 9480.0864 kcal/mol (9470.8428 without restraints) Performing minimization step: 1709. Total energy = 9476.4765 kcal/mol (9467.2351 without restraints) Performing minimization step: 1710. Total energy = 9472.8697 kcal/mol (9463.6306 without restraints) Performing minimization step: 1711. Total energy = 9469.2664 kcal/mol (9460.0295 without restraints) Performing minimization step: 1712. Total energy = 9465.6658 kcal/mol (9456.4312 without restraints) Performing minimization step: 1713. Total energy = 9462.0690 kcal/mol (9452.8366 without restraints) Performing minimization step: 1714. Total energy = 9458.4751 kcal/mol (9449.2450 without restraints) Performing minimization step: 1715. Total energy = 9454.8842 kcal/mol (9445.6563 without restraints) Performing minimization step: 1716. Total energy = 9451.2963 kcal/mol (9442.0707 without restraints) Performing minimization step: 1717. Total energy = 9447.7110 kcal/mol (9438.4876 without restraints) Performing minimization step: 1718. Total energy = 9444.1295 kcal/mol (9434.9083 without restraints) Performing minimization step: 1719. Total energy = 9440.5509 kcal/mol (9431.3319 without restraints) Performing minimization step: 1720. Total energy = 9436.9753 kcal/mol (9427.7585 without restraints) Performing minimization step: 1721. Total energy = 9433.4034 kcal/mol (9424.1889 without restraints) Performing minimization step: 1722. Total energy = 9429.8344 kcal/mol (9420.6220 without restraints) Performing minimization step: 1723. Total energy = 9426.2681 kcal/mol (9417.0580 without restraints) Performing minimization step: 1724. Total energy = 9422.7052 kcal/mol (9413.4974 without restraints) Performing minimization step: 1725. Total energy = 9419.1451 kcal/mol (9409.9394 without restraints) Performing minimization step: 1726. Total energy = 9415.5886 kcal/mol (9406.3852 without restraints) Performing minimization step: 1727. Total energy = 9412.0347 kcal/mol (9402.8336 without restraints) Performing minimization step: 1728. Total energy = 9408.4839 kcal/mol (9399.2849 without restraints) Performing minimization step: 1729. Total energy = 9404.9359 kcal/mol (9395.7392 without restraints) Performing minimization step: 1730. Total energy = 9401.3912 kcal/mol (9392.1967 without restraints) Performing minimization step: 1731. Total energy = 9397.8491 kcal/mol (9388.6568 without restraints) Performing minimization step: 1732. Total energy = 9394.3106 kcal/mol (9385.1206 without restraints) Performing minimization step: 1733. Total energy = 9390.7748 kcal/mol (9381.5870 without restraints) Performing minimization step: 1734. Total energy = 9387.2422 kcal/mol (9378.0566 without restraints) Performing minimization step: 1735. Total energy = 9383.7125 kcal/mol (9374.5291 without restraints) Performing minimization step: 1736. Total energy = 9380.1857 kcal/mol (9371.0047 without restraints) Performing minimization step: 1737. Total energy = 9376.6624 kcal/mol (9367.4834 without restraints) Performing minimization step: 1738. Total energy = 9373.1416 kcal/mol (9363.9649 without restraints) Performing minimization step: 1739. Total energy = 9369.6240 kcal/mol (9360.4497 without restraints) Performing minimization step: 1740. Total energy = 9366.1094 kcal/mol (9356.9372 without restraints) Performing minimization step: 1741. Total energy = 9362.5976 kcal/mol (9353.4274 without restraints) Performing minimization step: 1742. Total energy = 9359.0888 kcal/mol (9349.9211 without restraints) Performing minimization step: 1743. Total energy = 9355.5832 kcal/mol (9346.4175 without restraints) Performing minimization step: 1744. Total energy = 9352.0801 kcal/mol (9342.9166 without restraints) Performing minimization step: 1745. Total energy = 9348.5804 kcal/mol (9339.4191 without restraints) Performing minimization step: 1746. Total energy = 9345.0832 kcal/mol (9335.9241 without restraints) Performing minimization step: 1747. Total energy = 9341.5885 kcal/mol (9332.4317 without restraints) Performing minimization step: 1748. Total energy = 9338.0973 kcal/mol (9328.9425 without restraints) Performing minimization step: 1749. Total energy = 9334.6090 kcal/mol (9325.4566 without restraints) Performing minimization step: 1750. Total energy = 9331.1236 kcal/mol (9321.9734 without restraints) Performing minimization step: 1751. Total energy = 9327.6413 kcal/mol (9318.4933 without restraints) Performing minimization step: 1752. Total energy = 9324.1616 kcal/mol (9315.0158 without restraints) Performing minimization step: 1753. Total energy = 9320.6849 kcal/mol (9311.5413 without restraints) Performing minimization step: 1754. Total energy = 9317.2111 kcal/mol (9308.0698 without restraints) Performing minimization step: 1755. Total energy = 9313.7401 kcal/mol (9304.6008 without restraints) Performing minimization step: 1756. Total energy = 9310.2719 kcal/mol (9301.1350 without restraints) Performing minimization step: 1757. Total energy = 9306.8067 kcal/mol (9297.6719 without restraints) Performing minimization step: 1758. Total energy = 9303.3440 kcal/mol (9294.2114 without restraints) Performing minimization step: 1759. Total energy = 9299.8843 kcal/mol (9290.7540 without restraints) Performing minimization step: 1760. Total energy = 9296.4276 kcal/mol (9287.2994 without restraints) Performing minimization step: 1761. Total energy = 9292.9741 kcal/mol (9283.8482 without restraints) Performing minimization step: 1762. Total energy = 9289.5233 kcal/mol (9280.3996 without restraints) Performing minimization step: 1763. Total energy = 9286.0750 kcal/mol (9276.9534 without restraints) Performing minimization step: 1764. Total energy = 9282.6297 kcal/mol (9273.5104 without restraints) Performing minimization step: 1765. Total energy = 9279.1869 kcal/mol (9270.0697 without restraints) Performing minimization step: 1766. Total energy = 9275.7470 kcal/mol (9266.6320 without restraints) Performing minimization step: 1767. Total energy = 9272.3099 kcal/mol (9263.1971 without restraints) Performing minimization step: 1768. Total energy = 9268.8754 kcal/mol (9259.7647 without restraints) Performing minimization step: 1769. Total energy = 9265.4437 kcal/mol (9256.3353 without restraints) Performing minimization step: 1770. Total energy = 9262.0152 kcal/mol (9252.9090 without restraints) Performing minimization step: 1771. Total energy = 9258.5892 kcal/mol (9249.4852 without restraints) Performing minimization step: 1772. Total energy = 9255.1660 kcal/mol (9246.0642 without restraints) Performing minimization step: 1773. Total energy = 9251.7456 kcal/mol (9242.6460 without restraints) Performing minimization step: 1774. Total energy = 9248.3283 kcal/mol (9239.2308 without restraints) Performing minimization step: 1775. Total energy = 9244.9132 kcal/mol (9235.8180 without restraints) Performing minimization step: 1776. Total energy = 9241.5009 kcal/mol (9232.4079 without restraints) Performing minimization step: 1777. Total energy = 9238.0914 kcal/mol (9229.0005 without restraints) Performing minimization step: 1778. Total energy = 9234.6845 kcal/mol (9225.5958 without restraints) Performing minimization step: 1779. Total energy = 9231.2804 kcal/mol (9222.1941 without restraints) Performing minimization step: 1780. Total energy = 9227.8791 kcal/mol (9218.7948 without restraints) Performing minimization step: 1781. Total energy = 9224.4805 kcal/mol (9215.3984 without restraints) Performing minimization step: 1782. Total energy = 9221.0850 kcal/mol (9212.0051 without restraints) Performing minimization step: 1783. Total energy = 9217.6915 kcal/mol (9208.6138 without restraints) Performing minimization step: 1784. Total energy = 9214.3014 kcal/mol (9205.2259 without restraints) Performing minimization step: 1785. Total energy = 9210.9137 kcal/mol (9201.8403 without restraints) Performing minimization step: 1786. Total energy = 9207.5288 kcal/mol (9198.4575 without restraints) Performing minimization step: 1787. Total energy = 9204.1461 kcal/mol (9195.0770 without restraints) Performing minimization step: 1788. Total energy = 9200.7663 kcal/mol (9191.6995 without restraints) Performing minimization step: 1789. Total energy = 9197.3894 kcal/mol (9188.3249 without restraints) Performing minimization step: 1790. Total energy = 9194.0147 kcal/mol (9184.9523 without restraints) Performing minimization step: 1791. Total energy = 9190.6428 kcal/mol (9181.5825 without restraints) Performing minimization step: 1792. Total energy = 9187.2736 kcal/mol (9178.2156 without restraints) Performing minimization step: 1793. Total energy = 9183.9072 kcal/mol (9174.8513 without restraints) Performing minimization step: 1794. Total energy = 9180.5434 kcal/mol (9171.4896 without restraints) Performing minimization step: 1795. Total energy = 9177.1817 kcal/mol (9168.1301 without restraints) Performing minimization step: 1796. Total energy = 9173.8230 kcal/mol (9164.7737 without restraints) Performing minimization step: 1797. Total energy = 9170.4673 kcal/mol (9161.4200 without restraints) Performing minimization step: 1798. Total energy = 9167.1136 kcal/mol (9158.0684 without restraints) Performing minimization step: 1799. Total energy = 9163.7627 kcal/mol (9154.7198 without restraints) Performing minimization step: 1800. Total energy = 9160.4151 kcal/mol (9151.3744 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 9157.0695 kcal/mol (9148.0309 without restraints) Performing minimization step: 1802. Total energy = 9153.7262 kcal/mol (9144.6898 without restraints) Performing minimization step: 1803. Total energy = 9150.3856 kcal/mol (9141.3514 without restraints) Performing minimization step: 1804. Total energy = 9147.0481 kcal/mol (9138.0161 without restraints) Performing minimization step: 1805. Total energy = 9143.7130 kcal/mol (9134.6831 without restraints) Performing minimization step: 1806. Total energy = 9140.3798 kcal/mol (9131.3521 without restraints) Performing minimization step: 1807. Total energy = 9137.0497 kcal/mol (9128.0242 without restraints) Performing minimization step: 1808. Total energy = 9133.7222 kcal/mol (9124.6989 without restraints) Performing minimization step: 1809. Total energy = 9130.3969 kcal/mol (9121.3757 without restraints) Performing minimization step: 1810. Total energy = 9127.0741 kcal/mol (9118.0551 without restraints) Performing minimization step: 1811. Total energy = 9123.7541 kcal/mol (9114.7372 without restraints) Performing minimization step: 1812. Total energy = 9120.4365 kcal/mol (9111.4219 without restraints) Performing minimization step: 1813. Total energy = 9117.1214 kcal/mol (9108.1088 without restraints) Performing minimization step: 1814. Total energy = 9113.8085 kcal/mol (9104.7980 without restraints) Performing minimization step: 1815. Total energy = 9110.4988 kcal/mol (9101.4905 without restraints) Performing minimization step: 1816. Total energy = 9107.1907 kcal/mol (9098.1846 without restraints) Performing minimization step: 1817. Total energy = 9103.8855 kcal/mol (9094.8817 without restraints) Performing minimization step: 1818. Total energy = 9100.5829 kcal/mol (9091.5811 without restraints) Performing minimization step: 1819. Total energy = 9097.2825 kcal/mol (9088.2828 without restraints) Performing minimization step: 1820. Total energy = 9093.9845 kcal/mol (9084.9871 without restraints) Performing minimization step: 1821. Total energy = 9090.6892 kcal/mol (9081.6939 without restraints) Performing minimization step: 1822. Total energy = 9087.3969 kcal/mol (9078.4038 without restraints) Performing minimization step: 1823. Total energy = 9084.1064 kcal/mol (9075.1153 without restraints) Performing minimization step: 1824. Total energy = 9080.8182 kcal/mol (9071.8294 without restraints) Performing minimization step: 1825. Total energy = 9077.5327 kcal/mol (9068.5460 without restraints) Performing minimization step: 1826. Total energy = 9074.2497 kcal/mol (9065.2651 without restraints) Performing minimization step: 1827. Total energy = 9070.9693 kcal/mol (9061.9871 without restraints) Performing minimization step: 1828. Total energy = 9067.6914 kcal/mol (9058.7111 without restraints) Performing minimization step: 1829. Total energy = 9064.4155 kcal/mol (9055.4374 without restraints) Performing minimization step: 1830. Total energy = 9061.1424 kcal/mol (9052.1664 without restraints) Performing minimization step: 1831. Total energy = 9057.8716 kcal/mol (9048.8977 without restraints) Performing minimization step: 1832. Total energy = 9054.6033 kcal/mol (9045.6316 without restraints) Performing minimization step: 1833. Total energy = 9051.3370 kcal/mol (9042.3675 without restraints) Performing minimization step: 1834. Total energy = 9048.0738 kcal/mol (9039.1064 without restraints) Performing minimization step: 1835. Total energy = 9044.8129 kcal/mol (9035.8477 without restraints) Performing minimization step: 1836. Total energy = 9041.5537 kcal/mol (9032.5906 without restraints) Performing minimization step: 1837. Total energy = 9038.2972 kcal/mol (9029.3362 without restraints) Performing minimization step: 1838. Total energy = 9035.0430 kcal/mol (9026.0842 without restraints) Performing minimization step: 1839. Total energy = 9031.7916 kcal/mol (9022.8349 without restraints) Performing minimization step: 1840. Total energy = 9028.5423 kcal/mol (9019.5878 without restraints) Performing minimization step: 1841. Total energy = 9025.2957 kcal/mol (9016.3434 without restraints) Performing minimization step: 1842. Total energy = 9022.0509 kcal/mol (9013.1006 without restraints) Performing minimization step: 1843. Total energy = 9018.8088 kcal/mol (9009.8609 without restraints) Performing minimization step: 1844. Total energy = 9015.5695 kcal/mol (9006.6235 without restraints) Performing minimization step: 1845. Total energy = 9012.3318 kcal/mol (9003.3881 without restraints) Performing minimization step: 1846. Total energy = 9009.0967 kcal/mol (9000.1550 without restraints) Performing minimization step: 1847. Total energy = 9005.8639 kcal/mol (8996.9244 without restraints) Performing minimization step: 1848. Total energy = 9002.6336 kcal/mol (8993.6962 without restraints) Performing minimization step: 1849. Total energy = 8999.4056 kcal/mol (8990.4703 without restraints) Performing minimization step: 1850. Total energy = 8996.1797 kcal/mol (8987.2465 without restraints) Performing minimization step: 1851. Total energy = 8992.9561 kcal/mol (8984.0250 without restraints) Performing minimization step: 1852. Total energy = 8989.7353 kcal/mol (8980.8065 without restraints) Performing minimization step: 1853. Total energy = 8986.5163 kcal/mol (8977.5895 without restraints) Performing minimization step: 1854. Total energy = 8983.2997 kcal/mol (8974.3750 without restraints) Performing minimization step: 1855. Total energy = 8980.0856 kcal/mol (8971.1633 without restraints) Performing minimization step: 1856. Total energy = 8976.8738 kcal/mol (8967.9534 without restraints) Performing minimization step: 1857. Total energy = 8973.6646 kcal/mol (8964.7464 without restraints) Performing minimization step: 1858. Total energy = 8970.4571 kcal/mol (8961.5410 without restraints) Performing minimization step: 1859. Total energy = 8967.2519 kcal/mol (8958.3379 without restraints) Performing minimization step: 1860. Total energy = 8964.0487 kcal/mol (8955.1368 without restraints) Performing minimization step: 1861. Total energy = 8960.8480 kcal/mol (8951.9383 without restraints) Performing minimization step: 1862. Total energy = 8957.6496 kcal/mol (8948.7420 without restraints) Performing minimization step: 1863. Total energy = 8954.4535 kcal/mol (8945.5480 without restraints) Performing minimization step: 1864. Total energy = 8951.2596 kcal/mol (8942.3562 without restraints) Performing minimization step: 1865. Total energy = 8948.0676 kcal/mol (8939.1663 without restraints) Performing minimization step: 1866. Total energy = 8944.8782 kcal/mol (8935.9791 without restraints) Performing minimization step: 1867. Total energy = 8941.6912 kcal/mol (8932.7942 without restraints) Performing minimization step: 1868. Total energy = 8938.5064 kcal/mol (8929.6115 without restraints) Performing minimization step: 1869. Total energy = 8935.3239 kcal/mol (8926.4311 without restraints) Performing minimization step: 1870. Total energy = 8932.1435 kcal/mol (8923.2527 without restraints) Performing minimization step: 1871. Total energy = 8928.9651 kcal/mol (8920.0766 without restraints) Performing minimization step: 1872. Total energy = 8925.7891 kcal/mol (8916.9029 without restraints) Performing minimization step: 1873. Total energy = 8922.6156 kcal/mol (8913.7313 without restraints) Performing minimization step: 1874. Total energy = 8919.4439 kcal/mol (8910.5618 without restraints) Performing minimization step: 1875. Total energy = 8916.2752 kcal/mol (8907.3951 without restraints) Performing minimization step: 1876. Total energy = 8913.1080 kcal/mol (8904.2301 without restraints) Performing minimization step: 1877. Total energy = 8909.9433 kcal/mol (8901.0675 without restraints) Performing minimization step: 1878. Total energy = 8906.7808 kcal/mol (8897.9071 without restraints) Performing minimization step: 1879. Total energy = 8903.6198 kcal/mol (8894.7482 without restraints) Performing minimization step: 1880. Total energy = 8900.4614 kcal/mol (8891.5919 without restraints) Performing minimization step: 1881. Total energy = 8897.3052 kcal/mol (8888.4378 without restraints) Performing minimization step: 1882. Total energy = 8894.1512 kcal/mol (8885.2859 without restraints) Performing minimization step: 1883. Total energy = 8890.9995 kcal/mol (8882.1364 without restraints) Performing minimization step: 1884. Total energy = 8887.8497 kcal/mol (8878.9886 without restraints) Performing minimization step: 1885. Total energy = 8884.7021 kcal/mol (8875.8432 without restraints) Performing minimization step: 1886. Total energy = 8881.5568 kcal/mol (8872.7000 without restraints) Performing minimization step: 1887. Total energy = 8878.4136 kcal/mol (8869.5589 without restraints) Performing minimization step: 1888. Total energy = 8875.2726 kcal/mol (8866.4200 without restraints) Performing minimization step: 1889. Total energy = 8872.1337 kcal/mol (8863.2832 without restraints) Performing minimization step: 1890. Total energy = 8868.9971 kcal/mol (8860.1486 without restraints) Performing minimization step: 1891. Total energy = 8865.8629 kcal/mol (8857.0168 without restraints) Performing minimization step: 1892. Total energy = 8862.7312 kcal/mol (8853.8871 without restraints) Performing minimization step: 1893. Total energy = 8859.6011 kcal/mol (8850.7590 without restraints) Performing minimization step: 1894. Total energy = 8856.4730 kcal/mol (8847.6331 without restraints) Performing minimization step: 1895. Total energy = 8853.3471 kcal/mol (8844.5092 without restraints) Performing minimization step: 1896. Total energy = 8850.2234 kcal/mol (8841.3876 without restraints) Performing minimization step: 1897. Total energy = 8847.1016 kcal/mol (8838.2679 without restraints) Performing minimization step: 1898. Total energy = 8843.9821 kcal/mol (8835.1505 without restraints) Performing minimization step: 1899. Total energy = 8840.8647 kcal/mol (8832.0352 without restraints) Performing minimization step: 1900. Total energy = 8837.7489 kcal/mol (8828.9215 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 8834.6355 kcal/mol (8825.8102 without restraints) Performing minimization step: 1902. Total energy = 8831.5242 kcal/mol (8822.7011 without restraints) Performing minimization step: 1903. Total energy = 8828.4152 kcal/mol (8819.5942 without restraints) Performing minimization step: 1904. Total energy = 8825.3083 kcal/mol (8816.4892 without restraints) Performing minimization step: 1905. Total energy = 8822.2036 kcal/mol (8813.3867 without restraints) Performing minimization step: 1906. Total energy = 8819.1004 kcal/mol (8810.2857 without restraints) Performing minimization step: 1907. Total energy = 8815.9998 kcal/mol (8807.1872 without restraints) Performing minimization step: 1908. Total energy = 8812.9015 kcal/mol (8804.0910 without restraints) Performing minimization step: 1909. Total energy = 8809.8050 kcal/mol (8800.9965 without restraints) Performing minimization step: 1910. Total energy = 8806.7104 kcal/mol (8797.9041 without restraints) Performing minimization step: 1911. Total energy = 8803.6180 kcal/mol (8794.8137 without restraints) Performing minimization step: 1912. Total energy = 8800.5278 kcal/mol (8791.7256 without restraints) Performing minimization step: 1913. Total energy = 8797.4395 kcal/mol (8788.6393 without restraints) Performing minimization step: 1914. Total energy = 8794.3531 kcal/mol (8785.5551 without restraints) Performing minimization step: 1915. Total energy = 8791.2692 kcal/mol (8782.4733 without restraints) Performing minimization step: 1916. Total energy = 8788.1870 kcal/mol (8779.3932 without restraints) Performing minimization step: 1917. Total energy = 8785.1069 kcal/mol (8776.3152 without restraints) Performing minimization step: 1918. Total energy = 8782.0289 kcal/mol (8773.2392 without restraints) Performing minimization step: 1919. Total energy = 8778.9528 kcal/mol (8770.1652 without restraints) Performing minimization step: 1920. Total energy = 8775.8788 kcal/mol (8767.0933 without restraints) Performing minimization step: 1921. Total energy = 8772.8074 kcal/mol (8764.0240 without restraints) Performing minimization step: 1922. Total energy = 8769.7376 kcal/mol (8760.9562 without restraints) Performing minimization step: 1923. Total energy = 8766.6697 kcal/mol (8757.8905 without restraints) Performing minimization step: 1924. Total energy = 8763.6039 kcal/mol (8754.8268 without restraints) Performing minimization step: 1925. Total energy = 8760.5405 kcal/mol (8751.7655 without restraints) Performing minimization step: 1926. Total energy = 8757.4788 kcal/mol (8748.7058 without restraints) Performing minimization step: 1927. Total energy = 8754.4191 kcal/mol (8745.6482 without restraints) Performing minimization step: 1928. Total energy = 8751.3616 kcal/mol (8742.5928 without restraints) Performing minimization step: 1929. Total energy = 8748.3060 kcal/mol (8739.5395 without restraints) Performing minimization step: 1930. Total energy = 8745.2525 kcal/mol (8736.4879 without restraints) Performing minimization step: 1931. Total energy = 8742.2007 kcal/mol (8733.4381 without restraints) Performing minimization step: 1932. Total energy = 8739.1509 kcal/mol (8730.3904 without restraints) Performing minimization step: 1933. Total energy = 8736.1036 kcal/mol (8727.3452 without restraints) Performing minimization step: 1934. Total energy = 8733.0583 kcal/mol (8724.3019 without restraints) Performing minimization step: 1935. Total energy = 8730.0145 kcal/mol (8721.2603 without restraints) Performing minimization step: 1936. Total energy = 8726.9731 kcal/mol (8718.2211 without restraints) Performing minimization step: 1937. Total energy = 8723.9339 kcal/mol (8715.1841 without restraints) Performing minimization step: 1938. Total energy = 8720.8961 kcal/mol (8712.1482 without restraints) Performing minimization step: 1939. Total energy = 8717.8605 kcal/mol (8709.1146 without restraints) Performing minimization step: 1940. Total energy = 8714.8267 kcal/mol (8706.0829 without restraints) Performing minimization step: 1941. Total energy = 8711.7950 kcal/mol (8703.0532 without restraints) Performing minimization step: 1942. Total energy = 8708.7652 kcal/mol (8700.0255 without restraints) Performing minimization step: 1943. Total energy = 8705.7373 kcal/mol (8696.9995 without restraints) Performing minimization step: 1944. Total energy = 8702.7117 kcal/mol (8693.9762 without restraints) Performing minimization step: 1945. Total energy = 8699.6880 kcal/mol (8690.9545 without restraints) Performing minimization step: 1946. Total energy = 8696.6661 kcal/mol (8687.9347 without restraints) Performing minimization step: 1947. Total energy = 8693.6463 kcal/mol (8684.9170 without restraints) Performing minimization step: 1948. Total energy = 8690.6284 kcal/mol (8681.9011 without restraints) Performing minimization step: 1949. Total energy = 8687.6124 kcal/mol (8678.8873 without restraints) Performing minimization step: 1950. Total energy = 8684.5984 kcal/mol (8675.8753 without restraints) Performing minimization step: 1951. Total energy = 8681.5865 kcal/mol (8672.8655 without restraints) Performing minimization step: 1952. Total energy = 8678.5767 kcal/mol (8669.8577 without restraints) Performing minimization step: 1953. Total energy = 8675.5684 kcal/mol (8666.8515 without restraints) Performing minimization step: 1954. Total energy = 8672.5622 kcal/mol (8663.8473 without restraints) Performing minimization step: 1955. Total energy = 8669.5579 kcal/mol (8660.8452 without restraints) Performing minimization step: 1956. Total energy = 8666.5558 kcal/mol (8657.8454 without restraints) Performing minimization step: 1957. Total energy = 8663.5556 kcal/mol (8654.8469 without restraints) Performing minimization step: 1958. Total energy = 8660.5572 kcal/mol (8651.8506 without restraints) Performing minimization step: 1959. Total energy = 8657.5607 kcal/mol (8648.8562 without restraints) Performing minimization step: 1960. Total energy = 8654.5660 kcal/mol (8645.8636 without restraints) Performing minimization step: 1961. Total energy = 8651.5730 kcal/mol (8642.8727 without restraints) Performing minimization step: 1962. Total energy = 8648.5824 kcal/mol (8639.8841 without restraints) Performing minimization step: 1963. Total energy = 8645.5936 kcal/mol (8636.8974 without restraints) Performing minimization step: 1964. Total energy = 8642.6071 kcal/mol (8633.9129 without restraints) Performing minimization step: 1965. Total energy = 8639.6220 kcal/mol (8630.9299 without restraints) Performing minimization step: 1966. Total energy = 8636.6388 kcal/mol (8627.9487 without restraints) Performing minimization step: 1967. Total energy = 8633.6581 kcal/mol (8624.9701 without restraints) Performing minimization step: 1968. Total energy = 8630.6791 kcal/mol (8621.9932 without restraints) Performing minimization step: 1969. Total energy = 8627.7016 kcal/mol (8619.0177 without restraints) Performing minimization step: 1970. Total energy = 8624.7260 kcal/mol (8616.0442 without restraints) Performing minimization step: 1971. Total energy = 8621.7527 kcal/mol (8613.0729 without restraints) Performing minimization step: 1972. Total energy = 8618.7808 kcal/mol (8610.1030 without restraints) Performing minimization step: 1973. Total energy = 8615.8111 kcal/mol (8607.1354 without restraints) Performing minimization step: 1974. Total energy = 8612.8430 kcal/mol (8604.1696 without restraints) Performing minimization step: 1975. Total energy = 8609.8768 kcal/mol (8601.2053 without restraints) Performing minimization step: 1976. Total energy = 8606.9125 kcal/mol (8598.2431 without restraints) Performing minimization step: 1977. Total energy = 8603.9502 kcal/mol (8595.2828 without restraints) Performing minimization step: 1978. Total energy = 8600.9894 kcal/mol (8592.3241 without restraints) Performing minimization step: 1979. Total energy = 8598.0308 kcal/mol (8589.3675 without restraints) Performing minimization step: 1980. Total energy = 8595.0740 kcal/mol (8586.4128 without restraints) Performing minimization step: 1981. Total energy = 8592.1194 kcal/mol (8583.4603 without restraints) Performing minimization step: 1982. Total energy = 8589.1668 kcal/mol (8580.5096 without restraints) Performing minimization step: 1983. Total energy = 8586.2156 kcal/mol (8577.5605 without restraints) Performing minimization step: 1984. Total energy = 8583.2666 kcal/mol (8574.6135 without restraints) Performing minimization step: 1985. Total energy = 8580.3191 kcal/mol (8571.6681 without restraints) Performing minimization step: 1986. Total energy = 8577.3735 kcal/mol (8568.7246 without restraints) Performing minimization step: 1987. Total energy = 8574.4299 kcal/mol (8565.7830 without restraints) Performing minimization step: 1988. Total energy = 8571.4880 kcal/mol (8562.8432 without restraints) Performing minimization step: 1989. Total energy = 8568.5481 kcal/mol (8559.9054 without restraints) Performing minimization step: 1990. Total energy = 8565.6104 kcal/mol (8556.9699 without restraints) Performing minimization step: 1991. Total energy = 8562.6743 kcal/mol (8554.0356 without restraints) Performing minimization step: 1992. Total energy = 8559.7401 kcal/mol (8551.1034 without restraints) Performing minimization step: 1993. Total energy = 8556.8075 kcal/mol (8548.1729 without restraints) Performing minimization step: 1994. Total energy = 8553.8767 kcal/mol (8545.2442 without restraints) Performing minimization step: 1995. Total energy = 8550.9476 kcal/mol (8542.3171 without restraints) Performing minimization step: 1996. Total energy = 8548.0203 kcal/mol (8539.3918 without restraints) Performing minimization step: 1997. Total energy = 8545.0951 kcal/mol (8536.4688 without restraints) Performing minimization step: 1998. Total energy = 8542.1718 kcal/mol (8533.5474 without restraints) Performing minimization step: 1999. Total energy = 8539.2501 kcal/mol (8530.6278 without restraints) Performing minimization step: 2000. Total energy = 8536.3301 kcal/mol (8527.7098 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 8533.4122 kcal/mol (8524.7940 without restraints) Performing minimization step: 2002. Total energy = 8530.4961 kcal/mol (8521.8799 without restraints) Performing minimization step: 2003. Total energy = 8527.5821 kcal/mol (8518.9680 without restraints) Performing minimization step: 2004. Total energy = 8524.6698 kcal/mol (8516.0577 without restraints) Performing minimization step: 2005. Total energy = 8521.7591 kcal/mol (8513.1490 without restraints) Performing minimization step: 2006. Total energy = 8518.8506 kcal/mol (8510.2427 without restraints) Performing minimization step: 2007. Total energy = 8515.9436 kcal/mol (8507.3376 without restraints) Performing minimization step: 2008. Total energy = 8513.0384 kcal/mol (8504.4344 without restraints) Performing minimization step: 2009. Total energy = 8510.1348 kcal/mol (8501.5329 without restraints) Performing minimization step: 2010. Total energy = 8507.2331 kcal/mol (8498.6333 without restraints) Performing minimization step: 2011. Total energy = 8504.3329 kcal/mol (8495.7351 without restraints) Performing minimization step: 2012. Total energy = 8501.4348 kcal/mol (8492.8390 without restraints) Performing minimization step: 2013. Total energy = 8498.5381 kcal/mol (8489.9443 without restraints) Performing minimization step: 2014. Total energy = 8495.6435 kcal/mol (8487.0517 without restraints) Performing minimization step: 2015. Total energy = 8492.7506 kcal/mol (8484.1609 without restraints) Performing minimization step: 2016. Total energy = 8489.8601 kcal/mol (8481.2727 without restraints) Performing minimization step: 2017. Total energy = 8486.9710 kcal/mol (8478.3854 without restraints) Performing minimization step: 2018. Total energy = 8484.0834 kcal/mol (8475.4997 without restraints) Performing minimization step: 2019. Total energy = 8481.1977 kcal/mol (8472.6162 without restraints) Performing minimization step: 2020. Total energy = 8478.3140 kcal/mol (8469.7344 without restraints) Performing minimization step: 2021. Total energy = 8475.4317 kcal/mol (8466.8542 without restraints) Performing minimization step: 2022. Total energy = 8472.5512 kcal/mol (8463.9757 without restraints) Performing minimization step: 2023. Total energy = 8469.6726 kcal/mol (8461.0991 without restraints) Performing minimization step: 2024. Total energy = 8466.7954 kcal/mol (8458.2240 without restraints) Performing minimization step: 2025. Total energy = 8463.9204 kcal/mol (8455.3510 without restraints) Performing minimization step: 2026. Total energy = 8461.0465 kcal/mol (8452.4791 without restraints) Performing minimization step: 2027. Total energy = 8458.1748 kcal/mol (8449.6095 without restraints) Performing minimization step: 2028. Total energy = 8455.3048 kcal/mol (8446.7415 without restraints) Performing minimization step: 2029. Total energy = 8452.4366 kcal/mol (8443.8753 without restraints) Performing minimization step: 2030. Total energy = 8449.5701 kcal/mol (8441.0108 without restraints) Performing minimization step: 2031. Total energy = 8446.7053 kcal/mol (8438.1480 without restraints) Performing minimization step: 2032. Total energy = 8443.8425 kcal/mol (8435.2873 without restraints) Performing minimization step: 2033. Total energy = 8440.9813 kcal/mol (8432.4282 without restraints) Performing minimization step: 2034. Total energy = 8438.1217 kcal/mol (8429.5705 without restraints) Performing minimization step: 2035. Total energy = 8435.2636 kcal/mol (8426.7144 without restraints) Performing minimization step: 2036. Total energy = 8432.4074 kcal/mol (8423.8603 without restraints) Performing minimization step: 2037. Total energy = 8429.5529 kcal/mol (8421.0078 without restraints) Performing minimization step: 2038. Total energy = 8426.7002 kcal/mol (8418.1572 without restraints) Performing minimization step: 2039. Total energy = 8423.8497 kcal/mol (8415.3088 without restraints) Performing minimization step: 2040. Total energy = 8421.0003 kcal/mol (8412.4613 without restraints) Performing minimization step: 2041. Total energy = 8418.1527 kcal/mol (8409.6157 without restraints) Performing minimization step: 2042. Total energy = 8415.3070 kcal/mol (8406.7720 without restraints) Performing minimization step: 2043. Total energy = 8412.4630 kcal/mol (8403.9300 without restraints) Performing minimization step: 2044. Total energy = 8409.6204 kcal/mol (8401.0894 without restraints) Performing minimization step: 2045. Total energy = 8406.7796 kcal/mol (8398.2506 without restraints) Performing minimization step: 2046. Total energy = 8403.9402 kcal/mol (8395.4133 without restraints) Performing minimization step: 2047. Total energy = 8401.1027 kcal/mol (8392.5778 without restraints) Performing minimization step: 2048. Total energy = 8398.2670 kcal/mol (8389.7440 without restraints) Performing minimization step: 2049. Total energy = 8395.4330 kcal/mol (8386.9121 without restraints) Performing minimization step: 2050. Total energy = 8392.6004 kcal/mol (8384.0816 without restraints) Performing minimization step: 2051. Total energy = 8389.7697 kcal/mol (8381.2529 without restraints) Performing minimization step: 2052. Total energy = 8386.9406 kcal/mol (8378.4258 without restraints) Performing minimization step: 2053. Total energy = 8384.1132 kcal/mol (8375.6003 without restraints) Performing minimization step: 2054. Total energy = 8381.2878 kcal/mol (8372.7769 without restraints) Performing minimization step: 2055. Total energy = 8378.4636 kcal/mol (8369.9548 without restraints) Performing minimization step: 2056. Total energy = 8375.6407 kcal/mol (8367.1339 without restraints) Performing minimization step: 2057. Total energy = 8372.8197 kcal/mol (8364.3149 without restraints) Performing minimization step: 2058. Total energy = 8370.0006 kcal/mol (8361.4978 without restraints) Performing minimization step: 2059. Total energy = 8367.1831 kcal/mol (8358.6824 without restraints) Performing minimization step: 2060. Total energy = 8364.3674 kcal/mol (8355.8685 without restraints) Performing minimization step: 2061. Total energy = 8361.5528 kcal/mol (8353.0559 without restraints) Performing minimization step: 2062. Total energy = 8358.7399 kcal/mol (8350.2451 without restraints) Performing minimization step: 2063. Total energy = 8355.9289 kcal/mol (8347.4361 without restraints) Performing minimization step: 2064. Total energy = 8353.1193 kcal/mol (8344.6285 without restraints) Performing minimization step: 2065. Total energy = 8350.3115 kcal/mol (8341.8226 without restraints) Performing minimization step: 2066. Total energy = 8347.5053 kcal/mol (8339.0185 without restraints) Performing minimization step: 2067. Total energy = 8344.7006 kcal/mol (8336.2158 without restraints) Performing minimization step: 2068. Total energy = 8341.8979 kcal/mol (8333.4150 without restraints) Performing minimization step: 2069. Total energy = 8339.0965 kcal/mol (8330.6157 without restraints) Performing minimization step: 2070. Total energy = 8336.2973 kcal/mol (8327.8186 without restraints) Performing minimization step: 2071. Total energy = 8333.4993 kcal/mol (8325.0226 without restraints) Performing minimization step: 2072. Total energy = 8330.7032 kcal/mol (8322.2284 without restraints) Performing minimization step: 2073. Total energy = 8327.9086 kcal/mol (8319.4358 without restraints) Performing minimization step: 2074. Total energy = 8325.1154 kcal/mol (8316.6445 without restraints) Performing minimization step: 2075. Total energy = 8322.3241 kcal/mol (8313.8555 without restraints) Performing minimization step: 2076. Total energy = 8319.5342 kcal/mol (8311.0674 without restraints) Performing minimization step: 2077. Total energy = 8316.7457 kcal/mol (8308.2809 without restraints) Performing minimization step: 2078. Total energy = 8313.9588 kcal/mol (8305.4959 without restraints) Performing minimization step: 2079. Total energy = 8311.1734 kcal/mol (8302.7125 without restraints) Performing minimization step: 2080. Total energy = 8308.3898 kcal/mol (8299.9312 without restraints) Performing minimization step: 2081. Total energy = 8305.6078 kcal/mol (8297.1510 without restraints) Performing minimization step: 2082. Total energy = 8302.8272 kcal/mol (8294.3723 without restraints) Performing minimization step: 2083. Total energy = 8300.0482 kcal/mol (8291.5953 without restraints) Performing minimization step: 2084. Total energy = 8297.2707 kcal/mol (8288.8198 without restraints) Performing minimization step: 2085. Total energy = 8294.4950 kcal/mol (8286.0461 without restraints) Performing minimization step: 2086. Total energy = 8291.7208 kcal/mol (8283.2739 without restraints) Performing minimization step: 2087. Total energy = 8288.9484 kcal/mol (8280.5035 without restraints) Performing minimization step: 2088. Total energy = 8286.1774 kcal/mol (8277.7347 without restraints) Performing minimization step: 2089. Total energy = 8283.4079 kcal/mol (8274.9669 without restraints) Performing minimization step: 2090. Total energy = 8280.6397 kcal/mol (8272.2007 without restraints) Performing minimization step: 2091. Total energy = 8277.8730 kcal/mol (8269.4360 without restraints) Performing minimization step: 2092. Total energy = 8275.1083 kcal/mol (8266.6732 without restraints) Performing minimization step: 2093. Total energy = 8272.3449 kcal/mol (8263.9119 without restraints) Performing minimization step: 2094. Total energy = 8269.5829 kcal/mol (8261.1518 without restraints) Performing minimization step: 2095. Total energy = 8266.8223 kcal/mol (8258.3932 without restraints) Performing minimization step: 2096. Total energy = 8264.0635 kcal/mol (8255.6364 without restraints) Performing minimization step: 2097. Total energy = 8261.3056 kcal/mol (8252.8805 without restraints) Performing minimization step: 2098. Total energy = 8258.5495 kcal/mol (8250.1261 without restraints) Performing minimization step: 2099. Total energy = 8255.7947 kcal/mol (8247.3734 without restraints) Performing minimization step: 2100. Total energy = 8253.0420 kcal/mol (8244.6230 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 8250.2913 kcal/mol (8241.8741 without restraints) Performing minimization step: 2102. Total energy = 8247.5419 kcal/mol (8239.1267 without restraints) Performing minimization step: 2103. Total energy = 8244.7934 kcal/mol (8236.3801 without restraints) Performing minimization step: 2104. Total energy = 8242.0467 kcal/mol (8233.6353 without restraints) Performing minimization step: 2105. Total energy = 8239.3006 kcal/mol (8230.8912 without restraints) Performing minimization step: 2106. Total energy = 8236.5566 kcal/mol (8228.1492 without restraints) Performing minimization step: 2107. Total energy = 8233.8139 kcal/mol (8225.4085 without restraints) Performing minimization step: 2108. Total energy = 8231.0733 kcal/mol (8222.6699 without restraints) Performing minimization step: 2109. Total energy = 8228.3337 kcal/mol (8219.9322 without restraints) Performing minimization step: 2110. Total energy = 8225.5959 kcal/mol (8217.1965 without restraints) Performing minimization step: 2111. Total energy = 8222.8594 kcal/mol (8214.4619 without restraints) Performing minimization step: 2112. Total energy = 8220.1242 kcal/mol (8211.7287 without restraints) Performing minimization step: 2113. Total energy = 8217.3903 kcal/mol (8208.9967 without restraints) Performing minimization step: 2114. Total energy = 8214.6582 kcal/mol (8206.2666 without restraints) Performing minimization step: 2115. Total energy = 8211.9274 kcal/mol (8203.5377 without restraints) Performing minimization step: 2116. Total energy = 8209.1980 kcal/mol (8200.8103 without restraints) Performing minimization step: 2117. Total energy = 8206.4703 kcal/mol (8198.0846 without restraints) Performing minimization step: 2118. Total energy = 8203.7436 kcal/mol (8195.3598 without restraints) Performing minimization step: 2119. Total energy = 8201.0187 kcal/mol (8192.6370 without restraints) Performing minimization step: 2120. Total energy = 8198.2953 kcal/mol (8189.9153 without restraints) Performing minimization step: 2121. Total energy = 8195.5729 kcal/mol (8187.1950 without restraints) Performing minimization step: 2122. Total energy = 8192.8525 kcal/mol (8184.4766 without restraints) Performing minimization step: 2123. Total energy = 8190.1334 kcal/mol (8181.7594 without restraints) Performing minimization step: 2124. Total energy = 8187.4152 kcal/mol (8179.0432 without restraints) Performing minimization step: 2125. Total energy = 8184.6988 kcal/mol (8176.3287 without restraints) Performing minimization step: 2126. Total energy = 8181.9838 kcal/mol (8173.6159 without restraints) Performing minimization step: 2127. Total energy = 8179.2705 kcal/mol (8170.9043 without restraints) Performing minimization step: 2128. Total energy = 8176.5582 kcal/mol (8168.1940 without restraints) Performing minimization step: 2129. Total energy = 8173.8474 kcal/mol (8165.4851 without restraints) Performing minimization step: 2130. Total energy = 8171.1379 kcal/mol (8162.7777 without restraints) Performing minimization step: 2131. Total energy = 8168.4297 kcal/mol (8160.0714 without restraints) Performing minimization step: 2132. Total energy = 8165.7231 kcal/mol (8157.3667 without restraints) Performing minimization step: 2133. Total energy = 8163.0177 kcal/mol (8154.6633 without restraints) Performing minimization step: 2134. Total energy = 8160.3138 kcal/mol (8151.9613 without restraints) Performing minimization step: 2135. Total energy = 8157.6113 kcal/mol (8149.2608 without restraints) Performing minimization step: 2136. Total energy = 8154.9104 kcal/mol (8146.5618 without restraints) Performing minimization step: 2137. Total energy = 8152.2102 kcal/mol (8143.8636 without restraints) Performing minimization step: 2138. Total energy = 8149.5118 kcal/mol (8141.1672 without restraints) Performing minimization step: 2139. Total energy = 8146.8151 kcal/mol (8138.4724 without restraints) Performing minimization step: 2140. Total energy = 8144.1197 kcal/mol (8135.7789 without restraints) Performing minimization step: 2141. Total energy = 8141.4254 kcal/mol (8133.0865 without restraints) Performing minimization step: 2142. Total energy = 8138.7327 kcal/mol (8130.3958 without restraints) Performing minimization step: 2143. Total energy = 8136.0411 kcal/mol (8127.7061 without restraints) Performing minimization step: 2144. Total energy = 8133.3509 kcal/mol (8125.0179 without restraints) Performing minimization step: 2145. Total energy = 8130.6621 kcal/mol (8122.3311 without restraints) Performing minimization step: 2146. Total energy = 8127.9746 kcal/mol (8119.6454 without restraints) Performing minimization step: 2147. Total energy = 8125.2882 kcal/mol (8116.9609 without restraints) Performing minimization step: 2148. Total energy = 8122.6036 kcal/mol (8114.2783 without restraints) Performing minimization step: 2149. Total energy = 8119.9203 kcal/mol (8111.5970 without restraints) Performing minimization step: 2150. Total energy = 8117.2385 kcal/mol (8108.9170 without restraints) Performing minimization step: 2151. Total energy = 8114.5576 kcal/mol (8106.2381 without restraints) Performing minimization step: 2152. Total energy = 8111.8783 kcal/mol (8103.5607 without restraints) Performing minimization step: 2153. Total energy = 8109.1998 kcal/mol (8100.8842 without restraints) Performing minimization step: 2154. Total energy = 8106.5229 kcal/mol (8098.2092 without restraints) Performing minimization step: 2155. Total energy = 8103.8473 kcal/mol (8095.5356 without restraints) Performing minimization step: 2156. Total energy = 8101.1730 kcal/mol (8092.8632 without restraints) Performing minimization step: 2157. Total energy = 8098.5003 kcal/mol (8090.1924 without restraints) Performing minimization step: 2158. Total energy = 8095.8285 kcal/mol (8087.5226 without restraints) Performing minimization step: 2159. Total energy = 8093.1586 kcal/mol (8084.8546 without restraints) Performing minimization step: 2160. Total energy = 8090.4897 kcal/mol (8082.1876 without restraints) Performing minimization step: 2161. Total energy = 8087.8220 kcal/mol (8079.5219 without restraints) Performing minimization step: 2162. Total energy = 8085.1559 kcal/mol (8076.8577 without restraints) Performing minimization step: 2163. Total energy = 8082.4905 kcal/mol (8074.1942 without restraints) Performing minimization step: 2164. Total energy = 8079.8266 kcal/mol (8071.5322 without restraints) Performing minimization step: 2165. Total energy = 8077.1642 kcal/mol (8068.8719 without restraints) Performing minimization step: 2166. Total energy = 8074.5028 kcal/mol (8066.2122 without restraints) Performing minimization step: 2167. Total energy = 8071.8430 kcal/mol (8063.5545 without restraints) Performing minimization step: 2168. Total energy = 8069.1843 kcal/mol (8060.8975 without restraints) Performing minimization step: 2169. Total energy = 8066.5266 kcal/mol (8058.2418 without restraints) Performing minimization step: 2170. Total energy = 8063.8702 kcal/mol (8055.5873 without restraints) Performing minimization step: 2171. Total energy = 8061.2152 kcal/mol (8052.9343 without restraints) Performing minimization step: 2172. Total energy = 8058.5612 kcal/mol (8050.2822 without restraints) Performing minimization step: 2173. Total energy = 8055.9085 kcal/mol (8047.6314 without restraints) Performing minimization step: 2174. Total energy = 8053.2580 kcal/mol (8044.9829 without restraints) Performing minimization step: 2175. Total energy = 8050.6081 kcal/mol (8042.3348 without restraints) Performing minimization step: 2176. Total energy = 8047.9596 kcal/mol (8039.6883 without restraints) Performing minimization step: 2177. Total energy = 8045.3125 kcal/mol (8037.0430 without restraints) Performing minimization step: 2178. Total energy = 8042.6669 kcal/mol (8034.3994 without restraints) Performing minimization step: 2179. Total energy = 8040.0219 kcal/mol (8031.7563 without restraints) Performing minimization step: 2180. Total energy = 8037.3783 kcal/mol (8029.1147 without restraints) Performing minimization step: 2181. Total energy = 8034.7359 kcal/mol (8026.4741 without restraints) Performing minimization step: 2182. Total energy = 8032.0946 kcal/mol (8023.8350 without restraints) Performing minimization step: 2183. Total energy = 8029.4548 kcal/mol (8021.1968 without restraints) Performing minimization step: 2184. Total energy = 8026.8161 kcal/mol (8018.5600 without restraints) Performing minimization step: 2185. Total energy = 8024.1782 kcal/mol (8015.9241 without restraints) Performing minimization step: 2186. Total energy = 8021.5416 kcal/mol (8013.2893 without restraints) Performing minimization step: 2187. Total energy = 8018.9066 kcal/mol (8010.6562 without restraints) Performing minimization step: 2188. Total energy = 8016.2726 kcal/mol (8008.0242 without restraints) Performing minimization step: 2189. Total energy = 8013.6395 kcal/mol (8005.3930 without restraints) Performing minimization step: 2190. Total energy = 8011.0083 kcal/mol (8002.7635 without restraints) Performing minimization step: 2191. Total energy = 8008.3778 kcal/mol (8000.1350 without restraints) Performing minimization step: 2192. Total energy = 8005.7486 kcal/mol (7997.5077 without restraints) Performing minimization step: 2193. Total energy = 8003.1203 kcal/mol (7994.8814 without restraints) Performing minimization step: 2194. Total energy = 8000.4936 kcal/mol (7992.2565 without restraints) Performing minimization step: 2195. Total energy = 7997.8680 kcal/mol (7989.6328 without restraints) Performing minimization step: 2196. Total energy = 7995.2434 kcal/mol (7987.0102 without restraints) Performing minimization step: 2197. Total energy = 7992.6204 kcal/mol (7984.3890 without restraints) Performing minimization step: 2198. Total energy = 7989.9984 kcal/mol (7981.7690 without restraints) Performing minimization step: 2199. Total energy = 7987.3778 kcal/mol (7979.1503 without restraints) Performing minimization step: 2200. Total energy = 7984.7584 kcal/mol (7976.5327 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 7982.1399 kcal/mol (7973.9162 without restraints) Performing minimization step: 2202. Total energy = 7979.5227 kcal/mol (7971.3008 without restraints) Performing minimization step: 2203. Total energy = 7976.9065 kcal/mol (7968.6866 without restraints) Performing minimization step: 2204. Total energy = 7974.2920 kcal/mol (7966.0740 without restraints) Performing minimization step: 2205. Total energy = 7971.6782 kcal/mol (7963.4620 without restraints) Performing minimization step: 2206. Total energy = 7969.0662 kcal/mol (7960.8518 without restraints) Performing minimization step: 2207. Total energy = 7966.4546 kcal/mol (7958.2421 without restraints) Performing minimization step: 2208. Total energy = 7963.8442 kcal/mol (7955.6336 without restraints) Performing minimization step: 2209. Total energy = 7961.2350 kcal/mol (7953.0264 without restraints) Performing minimization step: 2210. Total energy = 7958.6270 kcal/mol (7950.4203 without restraints) Performing minimization step: 2211. Total energy = 7956.0199 kcal/mol (7947.8150 without restraints) Performing minimization step: 2212. Total energy = 7953.4143 kcal/mol (7945.2114 without restraints) Performing minimization step: 2213. Total energy = 7950.8100 kcal/mol (7942.6089 without restraints) Performing minimization step: 2214. Total energy = 7948.2066 kcal/mol (7940.0074 without restraints) Performing minimization step: 2215. Total energy = 7945.6043 kcal/mol (7937.4070 without restraints) Performing minimization step: 2216. Total energy = 7943.0029 kcal/mol (7934.8075 without restraints) Performing minimization step: 2217. Total energy = 7940.4033 kcal/mol (7932.2098 without restraints) Performing minimization step: 2218. Total energy = 7937.8046 kcal/mol (7929.6130 without restraints) Performing minimization step: 2219. Total energy = 7935.2077 kcal/mol (7927.0181 without restraints) Performing minimization step: 2220. Total energy = 7932.6112 kcal/mol (7924.4232 without restraints) Performing minimization step: 2221. Total energy = 7930.0156 kcal/mol (7921.8295 without restraints) Performing minimization step: 2222. Total energy = 7927.4216 kcal/mol (7919.2374 without restraints) Performing minimization step: 2223. Total energy = 7924.8283 kcal/mol (7916.6460 without restraints) Performing minimization step: 2224. Total energy = 7922.2364 kcal/mol (7914.0559 without restraints) Performing minimization step: 2225. Total energy = 7919.6457 kcal/mol (7911.4671 without restraints) Performing minimization step: 2226. Total energy = 7917.0561 kcal/mol (7908.8795 without restraints) Performing minimization step: 2227. Total energy = 7914.4675 kcal/mol (7906.2927 without restraints) Performing minimization step: 2228. Total energy = 7911.8798 kcal/mol (7903.7068 without restraints) Performing minimization step: 2229. Total energy = 7909.2932 kcal/mol (7901.1221 without restraints) Performing minimization step: 2230. Total energy = 7906.7077 kcal/mol (7898.5385 without restraints) Performing minimization step: 2231. Total energy = 7904.1229 kcal/mol (7895.9554 without restraints) Performing minimization step: 2232. Total energy = 7901.5393 kcal/mol (7893.3739 without restraints) Performing minimization step: 2233. Total energy = 7898.9572 kcal/mol (7890.7936 without restraints) Performing minimization step: 2234. Total energy = 7896.3763 kcal/mol (7888.2146 without restraints) Performing minimization step: 2235. Total energy = 7893.7965 kcal/mol (7885.6367 without restraints) Performing minimization step: 2236. Total energy = 7891.2174 kcal/mol (7883.0595 without restraints) Performing minimization step: 2237. Total energy = 7888.6394 kcal/mol (7880.4833 without restraints) Performing minimization step: 2238. Total energy = 7886.0628 kcal/mol (7877.9084 without restraints) Performing minimization step: 2239. Total energy = 7883.4872 kcal/mol (7875.3349 without restraints) Performing minimization step: 2240. Total energy = 7880.9131 kcal/mol (7872.7626 without restraints) Performing minimization step: 2241. Total energy = 7878.3396 kcal/mol (7870.1908 without restraints) Performing minimization step: 2242. Total energy = 7875.7672 kcal/mol (7867.6205 without restraints) Performing minimization step: 2243. Total energy = 7873.1961 kcal/mol (7865.0512 without restraints) Performing minimization step: 2244. Total energy = 7870.6259 kcal/mol (7862.4830 without restraints) Performing minimization step: 2245. Total energy = 7868.0569 kcal/mol (7859.9156 without restraints) Performing minimization step: 2246. Total energy = 7865.4888 kcal/mol (7857.3496 without restraints) Performing minimization step: 2247. Total energy = 7862.9216 kcal/mol (7854.7841 without restraints) Performing minimization step: 2248. Total energy = 7860.3556 kcal/mol (7852.2200 without restraints) Performing minimization step: 2249. Total energy = 7857.7908 kcal/mol (7849.6571 without restraints) Performing minimization step: 2250. Total energy = 7855.2270 kcal/mol (7847.0951 without restraints) Performing minimization step: 2251. Total energy = 7852.6645 kcal/mol (7844.5345 without restraints) Performing minimization step: 2252. Total energy = 7850.1029 kcal/mol (7841.9747 without restraints) Performing minimization step: 2253. Total energy = 7847.5422 kcal/mol (7839.4159 without restraints) Performing minimization step: 2254. Total energy = 7844.9829 kcal/mol (7836.8585 without restraints) Performing minimization step: 2255. Total energy = 7842.4245 kcal/mol (7834.3019 without restraints) Performing minimization step: 2256. Total energy = 7839.8670 kcal/mol (7831.7462 without restraints) Performing minimization step: 2257. Total energy = 7837.3105 kcal/mol (7829.1916 without restraints) Performing minimization step: 2258. Total energy = 7834.7552 kcal/mol (7826.6382 without restraints) Performing minimization step: 2259. Total energy = 7832.2014 kcal/mol (7824.0862 without restraints) Performing minimization step: 2260. Total energy = 7829.6480 kcal/mol (7821.5346 without restraints) Performing minimization step: 2261. Total energy = 7827.0961 kcal/mol (7818.9847 without restraints) Performing minimization step: 2262. Total energy = 7824.5451 kcal/mol (7816.4354 without restraints) Performing minimization step: 2263. Total energy = 7821.9949 kcal/mol (7813.8871 without restraints) Performing minimization step: 2264. Total energy = 7819.4458 kcal/mol (7811.3398 without restraints) Performing minimization step: 2265. Total energy = 7816.8977 kcal/mol (7808.7936 without restraints) Performing minimization step: 2266. Total energy = 7814.3509 kcal/mol (7806.2486 without restraints) Performing minimization step: 2267. Total energy = 7811.8049 kcal/mol (7803.7044 without restraints) Performing minimization step: 2268. Total energy = 7809.2599 kcal/mol (7801.1613 without restraints) Performing minimization step: 2269. Total energy = 7806.7159 kcal/mol (7798.6191 without restraints) Performing minimization step: 2270. Total energy = 7804.1731 kcal/mol (7796.0782 without restraints) Performing minimization step: 2271. Total energy = 7801.6315 kcal/mol (7793.5383 without restraints) Performing minimization step: 2272. Total energy = 7799.0907 kcal/mol (7790.9995 without restraints) Performing minimization step: 2273. Total energy = 7796.5509 kcal/mol (7788.4615 without restraints) Performing minimization step: 2274. Total energy = 7794.0121 kcal/mol (7785.9246 without restraints) Performing minimization step: 2275. Total energy = 7791.4747 kcal/mol (7783.3890 without restraints) Performing minimization step: 2276. Total energy = 7788.9379 kcal/mol (7780.8541 without restraints) Performing minimization step: 2277. Total energy = 7786.4022 kcal/mol (7778.3202 without restraints) Performing minimization step: 2278. Total energy = 7783.8675 kcal/mol (7775.7873 without restraints) Performing minimization step: 2279. Total energy = 7781.3337 kcal/mol (7773.2554 without restraints) Performing minimization step: 2280. Total energy = 7778.8014 kcal/mol (7770.7249 without restraints) Performing minimization step: 2281. Total energy = 7776.2699 kcal/mol (7768.1953 without restraints) Performing minimization step: 2282. Total energy = 7773.7395 kcal/mol (7765.6666 without restraints) Performing minimization step: 2283. Total energy = 7771.2102 kcal/mol (7763.1391 without restraints) Performing minimization step: 2284. Total energy = 7768.6815 kcal/mol (7760.6123 without restraints) Performing minimization step: 2285. Total energy = 7766.1539 kcal/mol (7758.0866 without restraints) Performing minimization step: 2286. Total energy = 7763.6277 kcal/mol (7755.5621 without restraints) Performing minimization step: 2287. Total energy = 7761.1029 kcal/mol (7753.0392 without restraints) Performing minimization step: 2288. Total energy = 7758.5783 kcal/mol (7750.5164 without restraints) Performing minimization step: 2289. Total energy = 7756.0547 kcal/mol (7747.9947 without restraints) Performing minimization step: 2290. Total energy = 7753.5322 kcal/mol (7745.4741 without restraints) Performing minimization step: 2291. Total energy = 7751.0104 kcal/mol (7742.9540 without restraints) Performing minimization step: 2292. Total energy = 7748.4899 kcal/mol (7740.4353 without restraints) Performing minimization step: 2293. Total energy = 7745.9703 kcal/mol (7737.9176 without restraints) Performing minimization step: 2294. Total energy = 7743.4521 kcal/mol (7735.4011 without restraints) Performing minimization step: 2295. Total energy = 7740.9339 kcal/mol (7732.8846 without restraints) Performing minimization step: 2296. Total energy = 7738.4170 kcal/mol (7730.3698 without restraints) Performing minimization step: 2297. Total energy = 7735.9017 kcal/mol (7727.8563 without restraints) Performing minimization step: 2298. Total energy = 7733.3872 kcal/mol (7725.3436 without restraints) Performing minimization step: 2299. Total energy = 7730.8737 kcal/mol (7722.8319 without restraints) Performing minimization step: 2300. Total energy = 7728.3611 kcal/mol (7720.3211 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 7725.8496 kcal/mol (7717.8115 without restraints) Performing minimization step: 2302. Total energy = 7723.3393 kcal/mol (7715.3030 without restraints) Performing minimization step: 2303. Total energy = 7720.8297 kcal/mol (7712.7952 without restraints) Performing minimization step: 2304. Total energy = 7718.3212 kcal/mol (7710.2885 without restraints) Performing minimization step: 2305. Total energy = 7715.8137 kcal/mol (7707.7829 without restraints) Performing minimization step: 2306. Total energy = 7713.3072 kcal/mol (7705.2782 without restraints) Performing minimization step: 2307. Total energy = 7710.8018 kcal/mol (7702.7746 without restraints) Performing minimization step: 2308. Total energy = 7708.2973 kcal/mol (7700.2720 without restraints) Performing minimization step: 2309. Total energy = 7705.7939 kcal/mol (7697.7704 without restraints) Performing minimization step: 2310. Total energy = 7703.2912 kcal/mol (7695.2696 without restraints) Performing minimization step: 2311. Total energy = 7700.7899 kcal/mol (7692.7700 without restraints) Performing minimization step: 2312. Total energy = 7698.2893 kcal/mol (7690.2711 without restraints) Performing minimization step: 2313. Total energy = 7695.7896 kcal/mol (7687.7733 without restraints) Performing minimization step: 2314. Total energy = 7693.2912 kcal/mol (7685.2768 without restraints) Performing minimization step: 2315. Total energy = 7690.7936 kcal/mol (7682.7810 without restraints) Performing minimization step: 2316. Total energy = 7688.2970 kcal/mol (7680.2861 without restraints) Performing minimization step: 2317. Total energy = 7685.8015 kcal/mol (7677.7924 without restraints) Performing minimization step: 2318. Total energy = 7683.3068 kcal/mol (7675.2995 without restraints) Performing minimization step: 2319. Total energy = 7680.8135 kcal/mol (7672.8080 without restraints) Performing minimization step: 2320. Total energy = 7678.3208 kcal/mol (7670.3172 without restraints) Performing minimization step: 2321. Total energy = 7675.8291 kcal/mol (7667.8273 without restraints) Performing minimization step: 2322. Total energy = 7673.3386 kcal/mol (7665.3386 without restraints) Performing minimization step: 2323. Total energy = 7670.8488 kcal/mol (7662.8506 without restraints) Performing minimization step: 2324. Total energy = 7668.3600 kcal/mol (7660.3637 without restraints) Performing minimization step: 2325. Total energy = 7665.8723 kcal/mol (7657.8777 without restraints) Performing minimization step: 2326. Total energy = 7663.3858 kcal/mol (7655.3932 without restraints) Performing minimization step: 2327. Total energy = 7660.9002 kcal/mol (7652.9092 without restraints) Performing minimization step: 2328. Total energy = 7658.4153 kcal/mol (7650.4262 without restraints) Performing minimization step: 2329. Total energy = 7655.9319 kcal/mol (7647.9446 without restraints) Performing minimization step: 2330. Total energy = 7653.4491 kcal/mol (7645.4635 without restraints) Performing minimization step: 2331. Total energy = 7650.9677 kcal/mol (7642.9840 without restraints) Performing minimization step: 2332. Total energy = 7648.4869 kcal/mol (7640.5050 without restraints) Performing minimization step: 2333. Total energy = 7646.0072 kcal/mol (7638.0270 without restraints) Performing minimization step: 2334. Total energy = 7643.5283 kcal/mol (7635.5499 without restraints) Performing minimization step: 2335. Total energy = 7641.0506 kcal/mol (7633.0741 without restraints) Performing minimization step: 2336. Total energy = 7638.5736 kcal/mol (7630.5989 without restraints) Performing minimization step: 2337. Total energy = 7636.0973 kcal/mol (7628.1243 without restraints) Performing minimization step: 2338. Total energy = 7633.6220 kcal/mol (7625.6509 without restraints) Performing minimization step: 2339. Total energy = 7631.1483 kcal/mol (7623.1789 without restraints) Performing minimization step: 2340. Total energy = 7628.6755 kcal/mol (7620.7079 without restraints) Performing minimization step: 2341. Total energy = 7626.2035 kcal/mol (7618.2378 without restraints) Performing minimization step: 2342. Total energy = 7623.7327 kcal/mol (7615.7687 without restraints) Performing minimization step: 2343. Total energy = 7621.2626 kcal/mol (7613.3004 without restraints) Performing minimization step: 2344. Total energy = 7618.7934 kcal/mol (7610.8331 without restraints) Performing minimization step: 2345. Total energy = 7616.3256 kcal/mol (7608.3671 without restraints) Performing minimization step: 2346. Total energy = 7613.8582 kcal/mol (7605.9015 without restraints) Performing minimization step: 2347. Total energy = 7611.3922 kcal/mol (7603.4373 without restraints) Performing minimization step: 2348. Total energy = 7608.9273 kcal/mol (7600.9742 without restraints) Performing minimization step: 2349. Total energy = 7606.4635 kcal/mol (7598.5121 without restraints) Performing minimization step: 2350. Total energy = 7604.0003 kcal/mol (7596.0508 without restraints) Performing minimization step: 2351. Total energy = 7601.5379 kcal/mol (7593.5902 without restraints) Performing minimization step: 2352. Total energy = 7599.0769 kcal/mol (7591.1310 without restraints) Performing minimization step: 2353. Total energy = 7596.6167 kcal/mol (7588.6726 without restraints) Performing minimization step: 2354. Total energy = 7594.1575 kcal/mol (7586.2151 without restraints) Performing minimization step: 2355. Total energy = 7591.6992 kcal/mol (7583.7586 without restraints) Performing minimization step: 2356. Total energy = 7589.2421 kcal/mol (7581.3034 without restraints) Performing minimization step: 2357. Total energy = 7586.7865 kcal/mol (7578.8496 without restraints) Performing minimization step: 2358. Total energy = 7584.3314 kcal/mol (7576.3963 without restraints) Performing minimization step: 2359. Total energy = 7581.8772 kcal/mol (7573.9438 without restraints) Performing minimization step: 2360. Total energy = 7579.4239 kcal/mol (7571.4923 without restraints) Performing minimization step: 2361. Total energy = 7576.9716 kcal/mol (7569.0418 without restraints) Performing minimization step: 2362. Total energy = 7574.5203 kcal/mol (7566.5924 without restraints) Performing minimization step: 2363. Total energy = 7572.0700 kcal/mol (7564.1437 without restraints) Performing minimization step: 2364. Total energy = 7569.6211 kcal/mol (7561.6967 without restraints) Performing minimization step: 2365. Total energy = 7567.1729 kcal/mol (7559.2502 without restraints) Performing minimization step: 2366. Total energy = 7564.7255 kcal/mol (7556.8046 without restraints) Performing minimization step: 2367. Total energy = 7562.2791 kcal/mol (7554.3601 without restraints) Performing minimization step: 2368. Total energy = 7559.8338 kcal/mol (7551.9165 without restraints) Performing minimization step: 2369. Total energy = 7557.3894 kcal/mol (7549.4739 without restraints) Performing minimization step: 2370. Total energy = 7554.9462 kcal/mol (7547.0325 without restraints) Performing minimization step: 2371. Total energy = 7552.5040 kcal/mol (7544.5920 without restraints) Performing minimization step: 2372. Total energy = 7550.0626 kcal/mol (7542.1524 without restraints) Performing minimization step: 2373. Total energy = 7547.6227 kcal/mol (7539.7143 without restraints) Performing minimization step: 2374. Total energy = 7545.1832 kcal/mol (7537.2766 without restraints) Performing minimization step: 2375. Total energy = 7542.7447 kcal/mol (7534.8398 without restraints) Performing minimization step: 2376. Total energy = 7540.3072 kcal/mol (7532.4041 without restraints) Performing minimization step: 2377. Total energy = 7537.8707 kcal/mol (7529.9695 without restraints) Performing minimization step: 2378. Total energy = 7535.4353 kcal/mol (7527.5358 without restraints) Performing minimization step: 2379. Total energy = 7533.0008 kcal/mol (7525.1032 without restraints) Performing minimization step: 2380. Total energy = 7530.5676 kcal/mol (7522.6718 without restraints) Performing minimization step: 2381. Total energy = 7528.1355 kcal/mol (7520.2415 without restraints) Performing minimization step: 2382. Total energy = 7525.7042 kcal/mol (7517.8118 without restraints) Performing minimization step: 2383. Total energy = 7523.2739 kcal/mol (7515.3834 without restraints) Performing minimization step: 2384. Total energy = 7520.8447 kcal/mol (7512.9559 without restraints) Performing minimization step: 2385. Total energy = 7518.4165 kcal/mol (7510.5295 without restraints) Performing minimization step: 2386. Total energy = 7515.9890 kcal/mol (7508.1038 without restraints) Performing minimization step: 2387. Total energy = 7513.5626 kcal/mol (7505.6792 without restraints) Performing minimization step: 2388. Total energy = 7511.1372 kcal/mol (7503.2555 without restraints) Performing minimization step: 2389. Total energy = 7508.7129 kcal/mol (7500.8330 without restraints) Performing minimization step: 2390. Total energy = 7506.2898 kcal/mol (7498.4117 without restraints) Performing minimization step: 2391. Total energy = 7503.8674 kcal/mol (7495.9911 without restraints) Performing minimization step: 2392. Total energy = 7501.4460 kcal/mol (7493.5715 without restraints) Performing minimization step: 2393. Total energy = 7499.0258 kcal/mol (7491.1530 without restraints) Performing minimization step: 2394. Total energy = 7496.6065 kcal/mol (7488.7355 without restraints) Performing minimization step: 2395. Total energy = 7494.1884 kcal/mol (7486.3192 without restraints) Performing minimization step: 2396. Total energy = 7491.7710 kcal/mol (7483.9036 without restraints) Performing minimization step: 2397. Total energy = 7489.3555 kcal/mol (7481.4899 without restraints) Performing minimization step: 2398. Total energy = 7486.9403 kcal/mol (7479.0765 without restraints) Performing minimization step: 2399. Total energy = 7484.5260 kcal/mol (7476.6639 without restraints) Performing minimization step: 2400. Total energy = 7482.1126 kcal/mol (7474.2523 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 7479.7003 kcal/mol (7471.8418 without restraints) Performing minimization step: 2402. Total energy = 7477.2894 kcal/mol (7469.4328 without restraints) Performing minimization step: 2403. Total energy = 7474.8792 kcal/mol (7467.0244 without restraints) Performing minimization step: 2404. Total energy = 7472.4701 kcal/mol (7464.6169 without restraints) Performing minimization step: 2405. Total energy = 7470.0613 kcal/mol (7462.2098 without restraints) Performing minimization step: 2406. Total energy = 7467.6540 kcal/mol (7459.8044 without restraints) Performing minimization step: 2407. Total energy = 7465.2481 kcal/mol (7457.4002 without restraints) Performing minimization step: 2408. Total energy = 7462.8434 kcal/mol (7454.9973 without restraints) Performing minimization step: 2409. Total energy = 7460.4397 kcal/mol (7452.5953 without restraints) Performing minimization step: 2410. Total energy = 7458.0366 kcal/mol (7450.1941 without restraints) Performing minimization step: 2411. Total energy = 7455.6346 kcal/mol (7447.7938 without restraints) Performing minimization step: 2412. Total energy = 7453.2335 kcal/mol (7445.3944 without restraints) Performing minimization step: 2413. Total energy = 7450.8336 kcal/mol (7442.9964 without restraints) Performing minimization step: 2414. Total energy = 7448.4349 kcal/mol (7440.5994 without restraints) Performing minimization step: 2415. Total energy = 7446.0367 kcal/mol (7438.2030 without restraints) Performing minimization step: 2416. Total energy = 7443.6396 kcal/mol (7435.8076 without restraints) Performing minimization step: 2417. Total energy = 7441.2435 kcal/mol (7433.4133 without restraints) Performing minimization step: 2418. Total energy = 7438.8490 kcal/mol (7431.0206 without restraints) Performing minimization step: 2419. Total energy = 7436.4556 kcal/mol (7428.6292 without restraints) Performing minimization step: 2420. Total energy = 7434.0631 kcal/mol (7426.2382 without restraints) Performing minimization step: 2421. Total energy = 7431.6713 kcal/mol (7423.8482 without restraints) Performing minimization step: 2422. Total energy = 7429.2806 kcal/mol (7421.4593 without restraints) Performing minimization step: 2423. Total energy = 7426.8910 kcal/mol (7419.0715 without restraints) Performing minimization step: 2424. Total energy = 7424.5025 kcal/mol (7416.6846 without restraints) Performing minimization step: 2425. Total energy = 7422.1149 kcal/mol (7414.2989 without restraints) Performing minimization step: 2426. Total energy = 7419.7285 kcal/mol (7411.9142 without restraints) Performing minimization step: 2427. Total energy = 7417.3430 kcal/mol (7409.5304 without restraints) Performing minimization step: 2428. Total energy = 7414.9586 kcal/mol (7407.1479 without restraints) Performing minimization step: 2429. Total energy = 7412.5750 kcal/mol (7404.7660 without restraints) Performing minimization step: 2430. Total energy = 7410.1927 kcal/mol (7402.3855 without restraints) Performing minimization step: 2431. Total energy = 7407.8115 kcal/mol (7400.0061 without restraints) Performing minimization step: 2432. Total energy = 7405.4318 kcal/mol (7397.6282 without restraints) Performing minimization step: 2433. Total energy = 7403.0528 kcal/mol (7395.2510 without restraints) Performing minimization step: 2434. Total energy = 7400.6748 kcal/mol (7392.8747 without restraints) Performing minimization step: 2435. Total energy = 7398.2979 kcal/mol (7390.4996 without restraints) Performing minimization step: 2436. Total energy = 7395.9217 kcal/mol (7388.1252 without restraints) Performing minimization step: 2437. Total energy = 7393.5469 kcal/mol (7385.7521 without restraints) Performing minimization step: 2438. Total energy = 7391.1730 kcal/mol (7383.3799 without restraints) Performing minimization step: 2439. Total energy = 7388.8002 kcal/mol (7381.0090 without restraints) Performing minimization step: 2440. Total energy = 7386.4288 kcal/mol (7378.6393 without restraints) Performing minimization step: 2441. Total energy = 7384.0582 kcal/mol (7376.2705 without restraints) Performing minimization step: 2442. Total energy = 7381.6888 kcal/mol (7373.9028 without restraints) Performing minimization step: 2443. Total energy = 7379.3200 kcal/mol (7371.5360 without restraints) Performing minimization step: 2444. Total energy = 7376.9530 kcal/mol (7369.1705 without restraints) Performing minimization step: 2445. Total energy = 7374.5868 kcal/mol (7366.8061 without restraints) Performing minimization step: 2446. Total energy = 7372.2218 kcal/mol (7364.4428 without restraints) Performing minimization step: 2447. Total energy = 7369.8577 kcal/mol (7362.0805 without restraints) Performing minimization step: 2448. Total energy = 7367.4949 kcal/mol (7359.7195 without restraints) Performing minimization step: 2449. Total energy = 7365.1332 kcal/mol (7357.3596 without restraints) Performing minimization step: 2450. Total energy = 7362.7725 kcal/mol (7355.0007 without restraints) Performing minimization step: 2451. Total energy = 7360.4126 kcal/mol (7352.6425 without restraints) Performing minimization step: 2452. Total energy = 7358.0540 kcal/mol (7350.2856 without restraints) Performing minimization step: 2453. Total energy = 7355.6967 kcal/mol (7347.9301 without restraints) Performing minimization step: 2454. Total energy = 7353.3406 kcal/mol (7345.5758 without restraints) Performing minimization step: 2455. Total energy = 7350.9853 kcal/mol (7343.2222 without restraints) Performing minimization step: 2456. Total energy = 7348.6314 kcal/mol (7340.8701 without restraints) Performing minimization step: 2457. Total energy = 7346.2783 kcal/mol (7338.5187 without restraints) Performing minimization step: 2458. Total energy = 7343.9264 kcal/mol (7336.1687 without restraints) Performing minimization step: 2459. Total energy = 7341.5755 kcal/mol (7333.8194 without restraints) Performing minimization step: 2460. Total energy = 7339.2258 kcal/mol (7331.4715 without restraints) Performing minimization step: 2461. Total energy = 7336.8771 kcal/mol (7329.1245 without restraints) Performing minimization step: 2462. Total energy = 7334.5293 kcal/mol (7326.7786 without restraints) Performing minimization step: 2463. Total energy = 7332.1830 kcal/mol (7324.4340 without restraints) Performing minimization step: 2464. Total energy = 7329.8381 kcal/mol (7322.0909 without restraints) Performing minimization step: 2465. Total energy = 7327.4939 kcal/mol (7319.7485 without restraints) Performing minimization step: 2466. Total energy = 7325.1508 kcal/mol (7317.4071 without restraints) Performing minimization step: 2467. Total energy = 7322.8087 kcal/mol (7315.0667 without restraints) Performing minimization step: 2468. Total energy = 7320.4678 kcal/mol (7312.7276 without restraints) Performing minimization step: 2469. Total energy = 7318.1279 kcal/mol (7310.3895 without restraints) Performing minimization step: 2470. Total energy = 7315.7894 kcal/mol (7308.0528 without restraints) Performing minimization step: 2471. Total energy = 7313.4517 kcal/mol (7305.7168 without restraints) Performing minimization step: 2472. Total energy = 7311.1149 kcal/mol (7303.3817 without restraints) Performing minimization step: 2473. Total energy = 7308.7795 kcal/mol (7301.0481 without restraints) Performing minimization step: 2474. Total energy = 7306.4455 kcal/mol (7298.7160 without restraints) Performing minimization step: 2475. Total energy = 7304.1124 kcal/mol (7296.3845 without restraints) Performing minimization step: 2476. Total energy = 7301.7806 kcal/mol (7294.0546 without restraints) Performing minimization step: 2477. Total energy = 7299.4502 kcal/mol (7291.7259 without restraints) Performing minimization step: 2478. Total energy = 7297.1216 kcal/mol (7289.3991 without restraints) Performing minimization step: 2479. Total energy = 7294.7932 kcal/mol (7287.0724 without restraints) Performing minimization step: 2480. Total energy = 7292.4655 kcal/mol (7284.7465 without restraints) Performing minimization step: 2481. Total energy = 7290.1395 kcal/mol (7282.4222 without restraints) Performing minimization step: 2482. Total energy = 7287.8144 kcal/mol (7280.0988 without restraints) Performing minimization step: 2483. Total energy = 7285.4904 kcal/mol (7277.7767 without restraints) Performing minimization step: 2484. Total energy = 7283.1678 kcal/mol (7275.4559 without restraints) Performing minimization step: 2485. Total energy = 7280.8467 kcal/mol (7273.1364 without restraints) Performing minimization step: 2486. Total energy = 7278.5266 kcal/mol (7270.8181 without restraints) Performing minimization step: 2487. Total energy = 7276.2076 kcal/mol (7268.5011 without restraints) Performing minimization step: 2488. Total energy = 7273.8898 kcal/mol (7266.1848 without restraints) Performing minimization step: 2489. Total energy = 7271.5729 kcal/mol (7263.8697 without restraints) Performing minimization step: 2490. Total energy = 7269.2572 kcal/mol (7261.5559 without restraints) Performing minimization step: 2491. Total energy = 7266.9423 kcal/mol (7259.2426 without restraints) Performing minimization step: 2492. Total energy = 7264.6287 kcal/mol (7256.9308 without restraints) Performing minimization step: 2493. Total energy = 7262.3163 kcal/mol (7254.6202 without restraints) Performing minimization step: 2494. Total energy = 7260.0056 kcal/mol (7252.3112 without restraints) Performing minimization step: 2495. Total energy = 7257.6959 kcal/mol (7250.0032 without restraints) Performing minimization step: 2496. Total energy = 7255.3874 kcal/mol (7247.6965 without restraints) Performing minimization step: 2497. Total energy = 7253.0798 kcal/mol (7245.3907 without restraints) Performing minimization step: 2498. Total energy = 7250.7734 kcal/mol (7243.0861 without restraints) Performing minimization step: 2499. Total energy = 7248.4680 kcal/mol (7240.7824 without restraints) Performing minimization step: 2500. Total energy = 7246.1639 kcal/mol (7238.4800 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 7243.8610 kcal/mol (7236.1789 without restraints) Performing minimization step: 2502. Total energy = 7241.5589 kcal/mol (7233.8785 without restraints) Performing minimization step: 2503. Total energy = 7239.2582 kcal/mol (7231.5796 without restraints) Performing minimization step: 2504. Total energy = 7236.9593 kcal/mol (7229.2825 without restraints) Performing minimization step: 2505. Total energy = 7234.6611 kcal/mol (7226.9860 without restraints) Performing minimization step: 2506. Total energy = 7232.3643 kcal/mol (7224.6910 without restraints) Performing minimization step: 2507. Total energy = 7230.0683 kcal/mol (7222.3968 without restraints) Performing minimization step: 2508. Total energy = 7227.7739 kcal/mol (7220.1042 without restraints) Performing minimization step: 2509. Total energy = 7225.4806 kcal/mol (7217.8125 without restraints) Performing minimization step: 2510. Total energy = 7223.1884 kcal/mol (7215.5221 without restraints) Performing minimization step: 2511. Total energy = 7220.8974 kcal/mol (7213.2329 without restraints) Performing minimization step: 2512. Total energy = 7218.6076 kcal/mol (7210.9449 without restraints) Performing minimization step: 2513. Total energy = 7216.3190 kcal/mol (7208.6579 without restraints) Performing minimization step: 2514. Total energy = 7214.0314 kcal/mol (7206.3722 without restraints) Performing minimization step: 2515. Total energy = 7211.7451 kcal/mol (7204.0876 without restraints) Performing minimization step: 2516. Total energy = 7209.4606 kcal/mol (7201.8048 without restraints) Performing minimization step: 2517. Total energy = 7207.1769 kcal/mol (7199.5229 without restraints) Performing minimization step: 2518. Total energy = 7204.8943 kcal/mol (7197.2420 without restraints) Performing minimization step: 2519. Total energy = 7202.6132 kcal/mol (7194.9627 without restraints) Performing minimization step: 2520. Total energy = 7200.3332 kcal/mol (7192.6845 without restraints) Performing minimization step: 2521. Total energy = 7198.0545 kcal/mol (7190.4077 without restraints) Performing minimization step: 2522. Total energy = 7195.7771 kcal/mol (7188.1320 without restraints) Performing minimization step: 2523. Total energy = 7193.5008 kcal/mol (7185.8574 without restraints) Performing minimization step: 2524. Total energy = 7191.2256 kcal/mol (7183.5840 without restraints) Performing minimization step: 2525. Total energy = 7188.9519 kcal/mol (7181.3118 without restraints) Performing minimization step: 2526. Total energy = 7186.6795 kcal/mol (7179.0413 without restraints) Performing minimization step: 2527. Total energy = 7184.4080 kcal/mol (7176.7717 without restraints) Performing minimization step: 2528. Total energy = 7182.1377 kcal/mol (7174.5030 without restraints) Performing minimization step: 2529. Total energy = 7179.8690 kcal/mol (7172.2361 without restraints) Performing minimization step: 2530. Total energy = 7177.6013 kcal/mol (7169.9702 without restraints) Performing minimization step: 2531. Total energy = 7175.3351 kcal/mol (7167.7057 without restraints) Performing minimization step: 2532. Total energy = 7173.0699 kcal/mol (7165.4423 without restraints) Performing minimization step: 2533. Total energy = 7170.8058 kcal/mol (7163.1800 without restraints) Performing minimization step: 2534. Total energy = 7168.5431 kcal/mol (7160.9191 without restraints) Performing minimization step: 2535. Total energy = 7166.2817 kcal/mol (7158.6594 without restraints) Performing minimization step: 2536. Total energy = 7164.0215 kcal/mol (7156.4010 without restraints) Performing minimization step: 2537. Total energy = 7161.7626 kcal/mol (7154.1438 without restraints) Performing minimization step: 2538. Total energy = 7159.5051 kcal/mol (7151.8882 without restraints) Performing minimization step: 2539. Total energy = 7157.2489 kcal/mol (7149.6336 without restraints) Performing minimization step: 2540. Total energy = 7154.9942 kcal/mol (7147.3807 without restraints) Performing minimization step: 2541. Total energy = 7152.7405 kcal/mol (7145.1287 without restraints) Performing minimization step: 2542. Total energy = 7150.4879 kcal/mol (7142.8779 without restraints) Performing minimization step: 2543. Total energy = 7148.2366 kcal/mol (7140.6285 without restraints) Performing minimization step: 2544. Total energy = 7145.9871 kcal/mol (7138.3806 without restraints) Performing minimization step: 2545. Total energy = 7143.7387 kcal/mol (7136.1339 without restraints) Performing minimization step: 2546. Total energy = 7141.4914 kcal/mol (7133.8886 without restraints) Performing minimization step: 2547. Total energy = 7139.2454 kcal/mol (7131.6441 without restraints) Performing minimization step: 2548. Total energy = 7137.0005 kcal/mol (7129.4010 without restraints) Performing minimization step: 2549. Total energy = 7134.7569 kcal/mol (7127.1593 without restraints) Performing minimization step: 2550. Total energy = 7132.5147 kcal/mol (7124.9187 without restraints) Performing minimization step: 2551. Total energy = 7130.2735 kcal/mol (7122.6793 without restraints) Performing minimization step: 2552. Total energy = 7128.0338 kcal/mol (7120.4414 without restraints) Performing minimization step: 2553. Total energy = 7125.7954 kcal/mol (7118.2047 without restraints) Performing minimization step: 2554. Total energy = 7123.5583 kcal/mol (7115.9694 without restraints) Performing minimization step: 2555. Total energy = 7121.3227 kcal/mol (7113.7356 without restraints) Performing minimization step: 2556. Total energy = 7119.0882 kcal/mol (7111.5029 without restraints) Performing minimization step: 2557. Total energy = 7116.8556 kcal/mol (7109.2721 without restraints) Performing minimization step: 2558. Total energy = 7114.6237 kcal/mol (7107.0417 without restraints) Performing minimization step: 2559. Total energy = 7112.3930 kcal/mol (7104.8129 without restraints) Performing minimization step: 2560. Total energy = 7110.1639 kcal/mol (7102.5855 without restraints) Performing minimization step: 2561. Total energy = 7107.9363 kcal/mol (7100.3598 without restraints) Performing minimization step: 2562. Total energy = 7105.7102 kcal/mol (7098.1356 without restraints) Performing minimization step: 2563. Total energy = 7103.4856 kcal/mol (7095.9129 without restraints) Performing minimization step: 2564. Total energy = 7101.2622 kcal/mol (7093.6910 without restraints) Performing minimization step: 2565. Total energy = 7099.0392 kcal/mol (7091.4698 without restraints) Performing minimization step: 2566. Total energy = 7096.8179 kcal/mol (7089.2503 without restraints) Performing minimization step: 2567. Total energy = 7094.5982 kcal/mol (7087.0322 without restraints) Performing minimization step: 2568. Total energy = 7092.3793 kcal/mol (7084.8150 without restraints) Performing minimization step: 2569. Total energy = 7090.1618 kcal/mol (7082.5994 without restraints) Performing minimization step: 2570. Total energy = 7087.9462 kcal/mol (7080.3855 without restraints) Performing minimization step: 2571. Total energy = 7085.7315 kcal/mol (7078.1725 without restraints) Performing minimization step: 2572. Total energy = 7083.5179 kcal/mol (7075.9607 without restraints) Performing minimization step: 2573. Total energy = 7081.3057 kcal/mol (7073.7503 without restraints) Performing minimization step: 2574. Total energy = 7079.0952 kcal/mol (7071.5416 without restraints) Performing minimization step: 2575. Total energy = 7076.8859 kcal/mol (7069.3339 without restraints) Performing minimization step: 2576. Total energy = 7074.6777 kcal/mol (7067.1276 without restraints) Performing minimization step: 2577. Total energy = 7072.4710 kcal/mol (7064.9226 without restraints) Performing minimization step: 2578. Total energy = 7070.2659 kcal/mol (7062.7193 without restraints) Performing minimization step: 2579. Total energy = 7068.0620 kcal/mol (7060.5171 without restraints) Performing minimization step: 2580. Total energy = 7065.8592 kcal/mol (7058.3160 without restraints) Performing minimization step: 2581. Total energy = 7063.6580 kcal/mol (7056.1168 without restraints) Performing minimization step: 2582. Total energy = 7061.4582 kcal/mol (7053.9186 without restraints) Performing minimization step: 2583. Total energy = 7059.2596 kcal/mol (7051.7218 without restraints) Performing minimization step: 2584. Total energy = 7057.0624 kcal/mol (7049.5264 without restraints) Performing minimization step: 2585. Total energy = 7054.8671 kcal/mol (7047.3328 without restraints) Performing minimization step: 2586. Total energy = 7052.6726 kcal/mol (7045.1401 without restraints) Performing minimization step: 2587. Total energy = 7050.4795 kcal/mol (7042.9488 without restraints) Performing minimization step: 2588. Total energy = 7048.2876 kcal/mol (7040.7586 without restraints) Performing minimization step: 2589. Total energy = 7046.0972 kcal/mol (7038.5700 without restraints) Performing minimization step: 2590. Total energy = 7043.9082 kcal/mol (7036.3828 without restraints) Performing minimization step: 2591. Total energy = 7041.7206 kcal/mol (7034.1969 without restraints) Performing minimization step: 2592. Total energy = 7039.5346 kcal/mol (7032.0126 without restraints) Performing minimization step: 2593. Total energy = 7037.3496 kcal/mol (7029.8293 without restraints) Performing minimization step: 2594. Total energy = 7035.1660 kcal/mol (7027.6476 without restraints) Performing minimization step: 2595. Total energy = 7032.9841 kcal/mol (7025.4675 without restraints) Performing minimization step: 2596. Total energy = 7030.8038 kcal/mol (7023.2893 without restraints) Performing minimization step: 2597. Total energy = 7028.6257 kcal/mol (7021.1126 without restraints) Performing minimization step: 2598. Total energy = 7026.4477 kcal/mol (7018.9364 without restraints) Performing minimization step: 2599. Total energy = 7024.2713 kcal/mol (7016.7618 without restraints) Performing minimization step: 2600. Total energy = 7022.0963 kcal/mol (7014.5884 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 7019.9227 kcal/mol (7012.4168 without restraints) Performing minimization step: 2602. Total energy = 7017.7505 kcal/mol (7010.2462 without restraints) Performing minimization step: 2603. Total energy = 7015.5798 kcal/mol (7008.0772 without restraints) Performing minimization step: 2604. Total energy = 7013.4106 kcal/mol (7005.9099 without restraints) Performing minimization step: 2605. Total energy = 7011.2432 kcal/mol (7003.7442 without restraints) Performing minimization step: 2606. Total energy = 7009.0766 kcal/mol (7001.5796 without restraints) Performing minimization step: 2607. Total energy = 7006.9116 kcal/mol (6999.4161 without restraints) Performing minimization step: 2608. Total energy = 7004.7476 kcal/mol (6997.2539 without restraints) Performing minimization step: 2609. Total energy = 7002.5851 kcal/mol (6995.0932 without restraints) Performing minimization step: 2610. Total energy = 7000.4237 kcal/mol (6992.9336 without restraints) Performing minimization step: 2611. Total energy = 6998.2641 kcal/mol (6990.7757 without restraints) Performing minimization step: 2612. Total energy = 6996.1060 kcal/mol (6988.6194 without restraints) Performing minimization step: 2613. Total energy = 6993.9493 kcal/mol (6986.4645 without restraints) Performing minimization step: 2614. Total energy = 6991.7940 kcal/mol (6984.3109 without restraints) Performing minimization step: 2615. Total energy = 6989.6403 kcal/mol (6982.1590 without restraints) Performing minimization step: 2616. Total energy = 6987.4877 kcal/mol (6980.0081 without restraints) Performing minimization step: 2617. Total energy = 6985.3364 kcal/mol (6977.8587 without restraints) Performing minimization step: 2618. Total energy = 6983.1867 kcal/mol (6975.7107 without restraints) Performing minimization step: 2619. Total energy = 6981.0382 kcal/mol (6973.5639 without restraints) Performing minimization step: 2620. Total energy = 6978.8913 kcal/mol (6971.4188 without restraints) Performing minimization step: 2621. Total energy = 6976.7456 kcal/mol (6969.2749 without restraints) Performing minimization step: 2622. Total energy = 6974.6018 kcal/mol (6967.1329 without restraints) Performing minimization step: 2623. Total energy = 6972.4592 kcal/mol (6964.9920 without restraints) Performing minimization step: 2624. Total energy = 6970.3181 kcal/mol (6962.8528 without restraints) Performing minimization step: 2625. Total energy = 6968.1786 kcal/mol (6960.7151 without restraints) Performing minimization step: 2626. Total energy = 6966.0405 kcal/mol (6958.5786 without restraints) Performing minimization step: 2627. Total energy = 6963.9040 kcal/mol (6956.4439 without restraints) Performing minimization step: 2628. Total energy = 6961.7686 kcal/mol (6954.3103 without restraints) Performing minimization step: 2629. Total energy = 6959.6349 kcal/mol (6952.1783 without restraints) Performing minimization step: 2630. Total energy = 6957.5026 kcal/mol (6950.0478 without restraints) Performing minimization step: 2631. Total energy = 6955.3718 kcal/mol (6947.9188 without restraints) Performing minimization step: 2632. Total energy = 6953.2422 kcal/mol (6945.7909 without restraints) Performing minimization step: 2633. Total energy = 6951.1142 kcal/mol (6943.6647 without restraints) Performing minimization step: 2634. Total energy = 6948.9877 kcal/mol (6941.5400 without restraints) Performing minimization step: 2635. Total energy = 6946.8629 kcal/mol (6939.4170 without restraints) Performing minimization step: 2636. Total energy = 6944.7391 kcal/mol (6937.2950 without restraints) Performing minimization step: 2637. Total energy = 6942.6171 kcal/mol (6935.1747 without restraints) Performing minimization step: 2638. Total energy = 6940.4967 kcal/mol (6933.0561 without restraints) Performing minimization step: 2639. Total energy = 6938.3776 kcal/mol (6930.9388 without restraints) Performing minimization step: 2640. Total energy = 6936.2597 kcal/mol (6928.8227 without restraints) Performing minimization step: 2641. Total energy = 6934.1433 kcal/mol (6926.7080 without restraints) Performing minimization step: 2642. Total energy = 6932.0287 kcal/mol (6924.5952 without restraints) Performing minimization step: 2643. Total energy = 6929.9155 kcal/mol (6922.4837 without restraints) Performing minimization step: 2644. Total energy = 6927.8035 kcal/mol (6920.3735 without restraints) Performing minimization step: 2645. Total energy = 6925.6929 kcal/mol (6918.2646 without restraints) Performing minimization step: 2646. Total energy = 6923.5836 kcal/mol (6916.1571 without restraints) Performing minimization step: 2647. Total energy = 6921.4761 kcal/mol (6914.0513 without restraints) Performing minimization step: 2648. Total energy = 6919.3700 kcal/mol (6911.9471 without restraints) Performing minimization step: 2649. Total energy = 6917.2654 kcal/mol (6909.8443 without restraints) Performing minimization step: 2650. Total energy = 6915.1623 kcal/mol (6907.7431 without restraints) Performing minimization step: 2651. Total energy = 6913.0605 kcal/mol (6905.6428 without restraints) Performing minimization step: 2652. Total energy = 6910.9602 kcal/mol (6903.5444 without restraints) Performing minimization step: 2653. Total energy = 6908.8615 kcal/mol (6901.4475 without restraints) Performing minimization step: 2654. Total energy = 6906.7643 kcal/mol (6899.3520 without restraints) Performing minimization step: 2655. Total energy = 6904.6684 kcal/mol (6897.2579 without restraints) Performing minimization step: 2656. Total energy = 6902.5743 kcal/mol (6895.1656 without restraints) Performing minimization step: 2657. Total energy = 6900.4814 kcal/mol (6893.0744 without restraints) Performing minimization step: 2658. Total energy = 6898.3899 kcal/mol (6890.9847 without restraints) Performing minimization step: 2659. Total energy = 6896.3003 kcal/mol (6888.8969 without restraints) Performing minimization step: 2660. Total energy = 6894.2120 kcal/mol (6886.8104 without restraints) Performing minimization step: 2661. Total energy = 6892.1248 kcal/mol (6884.7249 without restraints) Performing minimization step: 2662. Total energy = 6890.0394 kcal/mol (6882.6414 without restraints) Performing minimization step: 2663. Total energy = 6887.9557 kcal/mol (6880.5594 without restraints) Performing minimization step: 2664. Total energy = 6885.8734 kcal/mol (6878.4789 without restraints) Performing minimization step: 2665. Total energy = 6883.7926 kcal/mol (6876.3999 without restraints) Performing minimization step: 2666. Total energy = 6881.7137 kcal/mol (6874.3227 without restraints) Performing minimization step: 2667. Total energy = 6879.6359 kcal/mol (6872.2467 without restraints) Performing minimization step: 2668. Total energy = 6877.5596 kcal/mol (6870.1722 without restraints) Performing minimization step: 2669. Total energy = 6875.4851 kcal/mol (6868.0995 without restraints) Performing minimization step: 2670. Total energy = 6873.4120 kcal/mol (6866.0284 without restraints) Performing minimization step: 2671. Total energy = 6871.3404 kcal/mol (6863.9583 without restraints) Performing minimization step: 2672. Total energy = 6869.2702 kcal/mol (6861.8899 without restraints) Performing minimization step: 2673. Total energy = 6867.2014 kcal/mol (6859.8229 without restraints) Performing minimization step: 2674. Total energy = 6865.1343 kcal/mol (6857.7575 without restraints) Performing minimization step: 2675. Total energy = 6863.0685 kcal/mol (6855.6935 without restraints) Performing minimization step: 2676. Total energy = 6861.0042 kcal/mol (6853.6310 without restraints) Performing minimization step: 2677. Total energy = 6858.9419 kcal/mol (6851.5705 without restraints) Performing minimization step: 2678. Total energy = 6856.8805 kcal/mol (6849.5108 without restraints) Performing minimization step: 2679. Total energy = 6854.8210 kcal/mol (6847.4531 without restraints) Performing minimization step: 2680. Total energy = 6852.7629 kcal/mol (6845.3968 without restraints) Performing minimization step: 2681. Total energy = 6850.7062 kcal/mol (6843.3418 without restraints) Performing minimization step: 2682. Total energy = 6848.6510 kcal/mol (6841.2885 without restraints) Performing minimization step: 2683. Total energy = 6846.5979 kcal/mol (6839.2372 without restraints) Performing minimization step: 2684. Total energy = 6844.5458 kcal/mol (6837.1868 without restraints) Performing minimization step: 2685. Total energy = 6842.4957 kcal/mol (6835.1385 without restraints) Performing minimization step: 2686. Total energy = 6840.4468 kcal/mol (6833.0914 without restraints) Performing minimization step: 2687. Total energy = 6838.4000 kcal/mol (6831.0465 without restraints) Performing minimization step: 2688. Total energy = 6836.3544 kcal/mol (6829.0026 without restraints) Performing minimization step: 2689. Total energy = 6834.3104 kcal/mol (6826.9603 without restraints) Performing minimization step: 2690. Total energy = 6832.2674 kcal/mol (6824.9193 without restraints) Performing minimization step: 2691. Total energy = 6830.2262 kcal/mol (6822.8797 without restraints) Performing minimization step: 2692. Total energy = 6828.1868 kcal/mol (6820.8422 without restraints) Performing minimization step: 2693. Total energy = 6826.1484 kcal/mol (6818.8054 without restraints) Performing minimization step: 2694. Total energy = 6824.1120 kcal/mol (6816.7710 without restraints) Performing minimization step: 2695. Total energy = 6822.0772 kcal/mol (6814.7378 without restraints) Performing minimization step: 2696. Total energy = 6820.0437 kcal/mol (6812.7061 without restraints) Performing minimization step: 2697. Total energy = 6818.0113 kcal/mol (6810.6755 without restraints) Performing minimization step: 2698. Total energy = 6815.9809 kcal/mol (6808.6469 without restraints) Performing minimization step: 2699. Total energy = 6813.9524 kcal/mol (6806.6202 without restraints) Performing minimization step: 2700. Total energy = 6811.9251 kcal/mol (6804.5947 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 6809.8997 kcal/mol (6802.5711 without restraints) Performing minimization step: 2702. Total energy = 6807.8753 kcal/mol (6800.5484 without restraints) Performing minimization step: 2703. Total energy = 6805.8526 kcal/mol (6798.5276 without restraints) Performing minimization step: 2704. Total energy = 6803.8319 kcal/mol (6796.5086 without restraints) Performing minimization step: 2705. Total energy = 6801.8123 kcal/mol (6794.4908 without restraints) Performing minimization step: 2706. Total energy = 6799.7942 kcal/mol (6792.4745 without restraints) Performing minimization step: 2707. Total energy = 6797.7781 kcal/mol (6790.4601 without restraints) Performing minimization step: 2708. Total energy = 6795.7635 kcal/mol (6788.4474 without restraints) Performing minimization step: 2709. Total energy = 6793.7498 kcal/mol (6786.4355 without restraints) Performing minimization step: 2710. Total energy = 6791.7376 kcal/mol (6784.4247 without restraints) Performing minimization step: 2711. Total energy = 6789.7269 kcal/mol (6782.4161 without restraints) Performing minimization step: 2712. Total energy = 6787.7184 kcal/mol (6780.4095 without restraints) Performing minimization step: 2713. Total energy = 6785.7111 kcal/mol (6778.4038 without restraints) Performing minimization step: 2714. Total energy = 6783.7052 kcal/mol (6776.3998 without restraints) Performing minimization step: 2715. Total energy = 6781.7009 kcal/mol (6774.3972 without restraints) Performing minimization step: 2716. Total energy = 6779.6982 kcal/mol (6772.3963 without restraints) Performing minimization step: 2717. Total energy = 6777.6972 kcal/mol (6770.3972 without restraints) Performing minimization step: 2718. Total energy = 6775.6977 kcal/mol (6768.3994 without restraints) Performing minimization step: 2719. Total energy = 6773.6998 kcal/mol (6766.4033 without restraints) Performing minimization step: 2720. Total energy = 6771.7031 kcal/mol (6764.4084 without restraints) Performing minimization step: 2721. Total energy = 6769.7083 kcal/mol (6762.4153 without restraints) Performing minimization step: 2722. Total energy = 6767.7147 kcal/mol (6760.4236 without restraints) Performing minimization step: 2723. Total energy = 6765.7230 kcal/mol (6758.4337 without restraints) Performing minimization step: 2724. Total energy = 6763.7327 kcal/mol (6756.4452 without restraints) Performing minimization step: 2725. Total energy = 6761.7442 kcal/mol (6754.4584 without restraints) Performing minimization step: 2726. Total energy = 6759.7572 kcal/mol (6752.4732 without restraints) Performing minimization step: 2727. Total energy = 6757.7714 kcal/mol (6750.4892 without restraints) Performing minimization step: 2728. Total energy = 6755.7878 kcal/mol (6748.5075 without restraints) Performing minimization step: 2729. Total energy = 6753.8055 kcal/mol (6746.5269 without restraints) Performing minimization step: 2730. Total energy = 6751.8245 kcal/mol (6744.5476 without restraints) Performing minimization step: 2731. Total energy = 6749.8451 kcal/mol (6742.5700 without restraints) Performing minimization step: 2732. Total energy = 6747.8672 kcal/mol (6740.5939 without restraints) Performing minimization step: 2733. Total energy = 6745.8915 kcal/mol (6738.6201 without restraints) Performing minimization step: 2734. Total energy = 6743.9168 kcal/mol (6736.6472 without restraints) Performing minimization step: 2735. Total energy = 6741.9436 kcal/mol (6734.6757 without restraints) Performing minimization step: 2736. Total energy = 6739.9723 kcal/mol (6732.7062 without restraints) Performing minimization step: 2737. Total energy = 6738.0026 kcal/mol (6730.7384 without restraints) Performing minimization step: 2738. Total energy = 6736.0342 kcal/mol (6728.7717 without restraints) Performing minimization step: 2739. Total energy = 6734.0673 kcal/mol (6726.8066 without restraints) Performing minimization step: 2740. Total energy = 6732.1025 kcal/mol (6724.8437 without restraints) Performing minimization step: 2741. Total energy = 6730.1393 kcal/mol (6722.8821 without restraints) Performing minimization step: 2742. Total energy = 6728.1778 kcal/mol (6720.9224 without restraints) Performing minimization step: 2743. Total energy = 6726.2172 kcal/mol (6718.9635 without restraints) Performing minimization step: 2744. Total energy = 6724.2585 kcal/mol (6717.0067 without restraints) Performing minimization step: 2745. Total energy = 6722.3016 kcal/mol (6715.0517 without restraints) Performing minimization step: 2746. Total energy = 6720.3460 kcal/mol (6713.0978 without restraints) Performing minimization step: 2747. Total energy = 6718.3922 kcal/mol (6711.1458 without restraints) Performing minimization step: 2748. Total energy = 6716.4398 kcal/mol (6709.1952 without restraints) Performing minimization step: 2749. Total energy = 6714.4891 kcal/mol (6707.2463 without restraints) Performing minimization step: 2750. Total energy = 6712.5402 kcal/mol (6705.2992 without restraints) Performing minimization step: 2751. Total energy = 6710.5927 kcal/mol (6703.3535 without restraints) Performing minimization step: 2752. Total energy = 6708.6466 kcal/mol (6701.4092 without restraints) Performing minimization step: 2753. Total energy = 6706.7018 kcal/mol (6699.4661 without restraints) Performing minimization step: 2754. Total energy = 6704.7588 kcal/mol (6697.5250 without restraints) Performing minimization step: 2755. Total energy = 6702.8176 kcal/mol (6695.5855 without restraints) Performing minimization step: 2756. Total energy = 6700.8777 kcal/mol (6693.6474 without restraints) Performing minimization step: 2757. Total energy = 6698.9392 kcal/mol (6691.7106 without restraints) Performing minimization step: 2758. Total energy = 6697.0024 kcal/mol (6689.7758 without restraints) Performing minimization step: 2759. Total energy = 6695.0676 kcal/mol (6687.8427 without restraints) Performing minimization step: 2760. Total energy = 6693.1337 kcal/mol (6685.9106 without restraints) Performing minimization step: 2761. Total energy = 6691.2017 kcal/mol (6683.9804 without restraints) Performing minimization step: 2762. Total energy = 6689.2712 kcal/mol (6682.0517 without restraints) Performing minimization step: 2763. Total energy = 6687.3423 kcal/mol (6680.1246 without restraints) Performing minimization step: 2764. Total energy = 6685.4150 kcal/mol (6678.1991 without restraints) Performing minimization step: 2765. Total energy = 6683.4892 kcal/mol (6676.2751 without restraints) Performing minimization step: 2766. Total energy = 6681.5649 kcal/mol (6674.3525 without restraints) Performing minimization step: 2767. Total energy = 6679.6423 kcal/mol (6672.4317 without restraints) Performing minimization step: 2768. Total energy = 6677.7209 kcal/mol (6670.5121 without restraints) Performing minimization step: 2769. Total energy = 6675.8014 kcal/mol (6668.5945 without restraints) Performing minimization step: 2770. Total energy = 6673.8838 kcal/mol (6666.6787 without restraints) Performing minimization step: 2771. Total energy = 6671.9676 kcal/mol (6664.7642 without restraints) Performing minimization step: 2772. Total energy = 6670.0529 kcal/mol (6662.8515 without restraints) Performing minimization step: 2773. Total energy = 6668.1399 kcal/mol (6660.9402 without restraints) Performing minimization step: 2774. Total energy = 6666.2284 kcal/mol (6659.0304 without restraints) Performing minimization step: 2775. Total energy = 6664.3184 kcal/mol (6657.1223 without restraints) Performing minimization step: 2776. Total energy = 6662.4100 kcal/mol (6655.2157 without restraints) Performing minimization step: 2777. Total energy = 6660.5031 kcal/mol (6653.3105 without restraints) Performing minimization step: 2778. Total energy = 6658.5976 kcal/mol (6651.4068 without restraints) Performing minimization step: 2779. Total energy = 6656.6938 kcal/mol (6649.5049 without restraints) Performing minimization step: 2780. Total energy = 6654.7918 kcal/mol (6647.6046 without restraints) Performing minimization step: 2781. Total energy = 6652.8913 kcal/mol (6645.7059 without restraints) Performing minimization step: 2782. Total energy = 6650.9921 kcal/mol (6643.8085 without restraints) Performing minimization step: 2783. Total energy = 6649.0948 kcal/mol (6641.9131 without restraints) Performing minimization step: 2784. Total energy = 6647.1991 kcal/mol (6640.0191 without restraints) Performing minimization step: 2785. Total energy = 6645.3050 kcal/mol (6638.1268 without restraints) Performing minimization step: 2786. Total energy = 6643.4128 kcal/mol (6636.2364 without restraints) Performing minimization step: 2787. Total energy = 6641.5218 kcal/mol (6634.3472 without restraints) Performing minimization step: 2788. Total energy = 6639.6323 kcal/mol (6632.4595 without restraints) Performing minimization step: 2789. Total energy = 6637.7444 kcal/mol (6630.5734 without restraints) Performing minimization step: 2790. Total energy = 6635.8585 kcal/mol (6628.6892 without restraints) Performing minimization step: 2791. Total energy = 6633.9738 kcal/mol (6626.8064 without restraints) Performing minimization step: 2792. Total energy = 6632.0906 kcal/mol (6624.9250 without restraints) Performing minimization step: 2793. Total energy = 6630.2090 kcal/mol (6623.0452 without restraints) Performing minimization step: 2794. Total energy = 6628.3289 kcal/mol (6621.1669 without restraints) Performing minimization step: 2795. Total energy = 6626.4506 kcal/mol (6619.2905 without restraints) Performing minimization step: 2796. Total energy = 6624.5740 kcal/mol (6617.4156 without restraints) Performing minimization step: 2797. Total energy = 6622.6987 kcal/mol (6615.5421 without restraints) Performing minimization step: 2798. Total energy = 6620.8250 kcal/mol (6613.6702 without restraints) Performing minimization step: 2799. Total energy = 6618.9529 kcal/mol (6611.7999 without restraints) Performing minimization step: 2800. Total energy = 6617.0825 kcal/mol (6609.9314 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 6615.2137 kcal/mol (6608.0643 without restraints) Performing minimization step: 2802. Total energy = 6613.3463 kcal/mol (6606.1987 without restraints) Performing minimization step: 2803. Total energy = 6611.4808 kcal/mol (6604.3350 without restraints) Performing minimization step: 2804. Total energy = 6609.6165 kcal/mol (6602.4724 without restraints) Performing minimization step: 2805. Total energy = 6607.7539 kcal/mol (6600.6117 without restraints) Performing minimization step: 2806. Total energy = 6605.8929 kcal/mol (6598.7524 without restraints) Performing minimization step: 2807. Total energy = 6604.0335 kcal/mol (6596.8948 without restraints) Performing minimization step: 2808. Total energy = 6602.1755 kcal/mol (6595.0387 without restraints) Performing minimization step: 2809. Total energy = 6600.3194 kcal/mol (6593.1845 without restraints) Performing minimization step: 2810. Total energy = 6598.4647 kcal/mol (6591.3315 without restraints) Performing minimization step: 2811. Total energy = 6596.6114 kcal/mol (6589.4800 without restraints) Performing minimization step: 2812. Total energy = 6594.7597 kcal/mol (6587.6301 without restraints) Performing minimization step: 2813. Total energy = 6592.9100 kcal/mol (6585.7821 without restraints) Performing minimization step: 2814. Total energy = 6591.0617 kcal/mol (6583.9357 without restraints) Performing minimization step: 2815. Total energy = 6589.2145 kcal/mol (6582.0903 without restraints) Performing minimization step: 2816. Total energy = 6587.3688 kcal/mol (6580.2464 without restraints) Performing minimization step: 2817. Total energy = 6585.5249 kcal/mol (6578.4043 without restraints) Performing minimization step: 2818. Total energy = 6583.6826 kcal/mol (6576.5638 without restraints) Performing minimization step: 2819. Total energy = 6581.8419 kcal/mol (6574.7248 without restraints) Performing minimization step: 2820. Total energy = 6580.0025 kcal/mol (6572.8873 without restraints) Performing minimization step: 2821. Total energy = 6578.1652 kcal/mol (6571.0518 without restraints) Performing minimization step: 2822. Total energy = 6576.3295 kcal/mol (6569.2178 without restraints) Performing minimization step: 2823. Total energy = 6574.4952 kcal/mol (6567.3854 without restraints) Performing minimization step: 2824. Total energy = 6572.6619 kcal/mol (6565.5538 without restraints) Performing minimization step: 2825. Total energy = 6570.8310 kcal/mol (6563.7249 without restraints) Performing minimization step: 2826. Total energy = 6569.0013 kcal/mol (6561.8969 without restraints) Performing minimization step: 2827. Total energy = 6567.1733 kcal/mol (6560.0707 without restraints) Performing minimization step: 2828. Total energy = 6565.3466 kcal/mol (6558.2458 without restraints) Performing minimization step: 2829. Total energy = 6563.5216 kcal/mol (6556.4226 without restraints) Performing minimization step: 2830. Total energy = 6561.6980 kcal/mol (6554.6008 without restraints) Performing minimization step: 2831. Total energy = 6559.8763 kcal/mol (6552.7809 without restraints) Performing minimization step: 2832. Total energy = 6558.0558 kcal/mol (6550.9622 without restraints) Performing minimization step: 2833. Total energy = 6556.2372 kcal/mol (6549.1454 without restraints) Performing minimization step: 2834. Total energy = 6554.4195 kcal/mol (6547.3295 without restraints) Performing minimization step: 2835. Total energy = 6552.6040 kcal/mol (6545.5158 without restraints) Performing minimization step: 2836. Total energy = 6550.7898 kcal/mol (6543.7034 without restraints) Performing minimization step: 2837. Total energy = 6548.9771 kcal/mol (6541.8926 without restraints) Performing minimization step: 2838. Total energy = 6547.1660 kcal/mol (6540.0832 without restraints) Performing minimization step: 2839. Total energy = 6545.3564 kcal/mol (6538.2754 without restraints) Performing minimization step: 2840. Total energy = 6543.5484 kcal/mol (6536.4692 without restraints) Performing minimization step: 2841. Total energy = 6541.7419 kcal/mol (6534.6645 without restraints) Performing minimization step: 2842. Total energy = 6539.9369 kcal/mol (6532.8614 without restraints) Performing minimization step: 2843. Total energy = 6538.1333 kcal/mol (6531.0595 without restraints) Performing minimization step: 2844. Total energy = 6536.3312 kcal/mol (6529.2593 without restraints) Performing minimization step: 2845. Total energy = 6534.5308 kcal/mol (6527.4606 without restraints) Performing minimization step: 2846. Total energy = 6532.7321 kcal/mol (6525.6638 without restraints) Performing minimization step: 2847. Total energy = 6530.9354 kcal/mol (6523.8690 without restraints) Performing minimization step: 2848. Total energy = 6529.1399 kcal/mol (6522.0752 without restraints) Performing minimization step: 2849. Total energy = 6527.3460 kcal/mol (6520.2831 without restraints) Performing minimization step: 2850. Total energy = 6525.5537 kcal/mol (6518.4925 without restraints) Performing minimization step: 2851. Total energy = 6523.7629 kcal/mol (6516.7035 without restraints) Performing minimization step: 2852. Total energy = 6521.9734 kcal/mol (6514.9159 without restraints) Performing minimization step: 2853. Total energy = 6520.1852 kcal/mol (6513.1295 without restraints) Performing minimization step: 2854. Total energy = 6518.3993 kcal/mol (6511.3453 without restraints) Performing minimization step: 2855. Total energy = 6516.6148 kcal/mol (6509.5628 without restraints) Performing minimization step: 2856. Total energy = 6514.8314 kcal/mol (6507.7811 without restraints) Performing minimization step: 2857. Total energy = 6513.0496 kcal/mol (6506.0010 without restraints) Performing minimization step: 2858. Total energy = 6511.2693 kcal/mol (6504.2226 without restraints) Performing minimization step: 2859. Total energy = 6509.4907 kcal/mol (6502.4459 without restraints) Performing minimization step: 2860. Total energy = 6507.7138 kcal/mol (6500.6707 without restraints) Performing minimization step: 2861. Total energy = 6505.9385 kcal/mol (6498.8974 without restraints) Performing minimization step: 2862. Total energy = 6504.1647 kcal/mol (6497.1254 without restraints) Performing minimization step: 2863. Total energy = 6502.3923 kcal/mol (6495.3546 without restraints) Performing minimization step: 2864. Total energy = 6500.6212 kcal/mol (6493.5853 without restraints) Performing minimization step: 2865. Total energy = 6498.8518 kcal/mol (6491.8177 without restraints) Performing minimization step: 2866. Total energy = 6497.0837 kcal/mol (6490.0515 without restraints) Performing minimization step: 2867. Total energy = 6495.3174 kcal/mol (6488.2871 without restraints) Performing minimization step: 2868. Total energy = 6493.5526 kcal/mol (6486.5240 without restraints) Performing minimization step: 2869. Total energy = 6491.7894 kcal/mol (6484.7626 without restraints) Performing minimization step: 2870. Total energy = 6490.0273 kcal/mol (6483.0022 without restraints) Performing minimization step: 2871. Total energy = 6488.2674 kcal/mol (6481.2441 without restraints) Performing minimization step: 2872. Total energy = 6486.5086 kcal/mol (6479.4872 without restraints) Performing minimization step: 2873. Total energy = 6484.7513 kcal/mol (6477.7317 without restraints) Performing minimization step: 2874. Total energy = 6482.9955 kcal/mol (6475.9777 without restraints) Performing minimization step: 2875. Total energy = 6481.2408 kcal/mol (6474.2248 without restraints) Performing minimization step: 2876. Total energy = 6479.4879 kcal/mol (6472.4736 without restraints) Performing minimization step: 2877. Total energy = 6477.7370 kcal/mol (6470.7246 without restraints) Performing minimization step: 2878. Total energy = 6475.9873 kcal/mol (6468.9767 without restraints) Performing minimization step: 2879. Total energy = 6474.2393 kcal/mol (6467.2305 without restraints) Performing minimization step: 2880. Total energy = 6472.4924 kcal/mol (6465.4854 without restraints) Performing minimization step: 2881. Total energy = 6470.7469 kcal/mol (6463.7417 without restraints) Performing minimization step: 2882. Total energy = 6469.0034 kcal/mol (6462.0000 without restraints) Performing minimization step: 2883. Total energy = 6467.2614 kcal/mol (6460.2598 without restraints) Performing minimization step: 2884. Total energy = 6465.5207 kcal/mol (6458.5210 without restraints) Performing minimization step: 2885. Total energy = 6463.7818 kcal/mol (6456.7838 without restraints) Performing minimization step: 2886. Total energy = 6462.0444 kcal/mol (6455.0482 without restraints) Performing minimization step: 2887. Total energy = 6460.3083 kcal/mol (6453.3139 without restraints) Performing minimization step: 2888. Total energy = 6458.5741 kcal/mol (6451.5815 without restraints) Performing minimization step: 2889. Total energy = 6456.8409 kcal/mol (6449.8502 without restraints) Performing minimization step: 2890. Total energy = 6455.1093 kcal/mol (6448.1203 without restraints) Performing minimization step: 2891. Total energy = 6453.3796 kcal/mol (6446.3926 without restraints) Performing minimization step: 2892. Total energy = 6451.6511 kcal/mol (6444.6658 without restraints) Performing minimization step: 2893. Total energy = 6449.9238 kcal/mol (6442.9403 without restraints) Performing minimization step: 2894. Total energy = 6448.1982 kcal/mol (6441.2165 without restraints) Performing minimization step: 2895. Total energy = 6446.4743 kcal/mol (6439.4944 without restraints) Performing minimization step: 2896. Total energy = 6444.7521 kcal/mol (6437.7739 without restraints) Performing minimization step: 2897. Total energy = 6443.0309 kcal/mol (6436.0546 without restraints) Performing minimization step: 2898. Total energy = 6441.3113 kcal/mol (6434.3368 without restraints) Performing minimization step: 2899. Total energy = 6439.5931 kcal/mol (6432.6204 without restraints) Performing minimization step: 2900. Total energy = 6437.8767 kcal/mol (6430.9058 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 6436.1615 kcal/mol (6429.1924 without restraints) Performing minimization step: 2902. Total energy = 6434.4482 kcal/mol (6427.4809 without restraints) Performing minimization step: 2903. Total energy = 6432.7357 kcal/mol (6425.7702 without restraints) Performing minimization step: 2904. Total energy = 6431.0249 kcal/mol (6424.0612 without restraints) Performing minimization step: 2905. Total energy = 6429.3156 kcal/mol (6422.3538 without restraints) Performing minimization step: 2906. Total energy = 6427.6080 kcal/mol (6420.6479 without restraints) Performing minimization step: 2907. Total energy = 6425.9016 kcal/mol (6418.9433 without restraints) Performing minimization step: 2908. Total energy = 6424.1968 kcal/mol (6417.2403 without restraints) Performing minimization step: 2909. Total energy = 6422.4939 kcal/mol (6415.5392 without restraints) Performing minimization step: 2910. Total energy = 6420.7921 kcal/mol (6413.8392 without restraints) Performing minimization step: 2911. Total energy = 6419.0919 kcal/mol (6412.1408 without restraints) Performing minimization step: 2912. Total energy = 6417.3930 kcal/mol (6410.4438 without restraints) Performing minimization step: 2913. Total energy = 6415.6955 kcal/mol (6408.7482 without restraints) Performing minimization step: 2914. Total energy = 6413.9997 kcal/mol (6407.0539 without restraints) Performing minimization step: 2915. Total energy = 6412.3052 kcal/mol (6405.3615 without restraints) Performing minimization step: 2916. Total energy = 6410.6126 kcal/mol (6403.6706 without restraints) Performing minimization step: 2917. Total energy = 6408.9213 kcal/mol (6401.9811 without restraints) Performing minimization step: 2918. Total energy = 6407.2311 kcal/mol (6400.2926 without restraints) Performing minimization step: 2919. Total energy = 6405.5429 kcal/mol (6398.6062 without restraints) Performing minimization step: 2920. Total energy = 6403.8559 kcal/mol (6396.9212 without restraints) Performing minimization step: 2921. Total energy = 6402.1707 kcal/mol (6395.2377 without restraints) Performing minimization step: 2922. Total energy = 6400.4868 kcal/mol (6393.5555 without restraints) Performing minimization step: 2923. Total energy = 6398.8040 kcal/mol (6391.8746 without restraints) Performing minimization step: 2924. Total energy = 6397.1230 kcal/mol (6390.1954 without restraints) Performing minimization step: 2925. Total energy = 6395.4436 kcal/mol (6388.5178 without restraints) Performing minimization step: 2926. Total energy = 6393.7655 kcal/mol (6386.8415 without restraints) Performing minimization step: 2927. Total energy = 6392.0886 kcal/mol (6385.1665 without restraints) Performing minimization step: 2928. Total energy = 6390.4133 kcal/mol (6383.4931 without restraints) Performing minimization step: 2929. Total energy = 6388.7395 kcal/mol (6381.8209 without restraints) Performing minimization step: 2930. Total energy = 6387.0668 kcal/mol (6380.1500 without restraints) Performing minimization step: 2931. Total energy = 6385.3958 kcal/mol (6378.4808 without restraints) Performing minimization step: 2932. Total energy = 6383.7264 kcal/mol (6376.8132 without restraints) Performing minimization step: 2933. Total energy = 6382.0583 kcal/mol (6375.1469 without restraints) Performing minimization step: 2934. Total energy = 6380.3916 kcal/mol (6373.4820 without restraints) Performing minimization step: 2935. Total energy = 6378.7263 kcal/mol (6371.8185 without restraints) Performing minimization step: 2936. Total energy = 6377.0626 kcal/mol (6370.1566 without restraints) Performing minimization step: 2937. Total energy = 6375.4002 kcal/mol (6368.4959 without restraints) Performing minimization step: 2938. Total energy = 6373.7394 kcal/mol (6366.8370 without restraints) Performing minimization step: 2939. Total energy = 6372.0801 kcal/mol (6365.1795 without restraints) Performing minimization step: 2940. Total energy = 6370.4220 kcal/mol (6363.5233 without restraints) Performing minimization step: 2941. Total energy = 6368.7651 kcal/mol (6361.8681 without restraints) Performing minimization step: 2942. Total energy = 6367.1099 kcal/mol (6360.2148 without restraints) Performing minimization step: 2943. Total energy = 6365.4563 kcal/mol (6358.5629 without restraints) Performing minimization step: 2944. Total energy = 6363.8039 kcal/mol (6356.9124 without restraints) Performing minimization step: 2945. Total energy = 6362.1531 kcal/mol (6355.2634 without restraints) Performing minimization step: 2946. Total energy = 6360.5041 kcal/mol (6353.6161 without restraints) Performing minimization step: 2947. Total energy = 6358.8563 kcal/mol (6351.9702 without restraints) Performing minimization step: 2948. Total energy = 6357.2098 kcal/mol (6350.3255 without restraints) Performing minimization step: 2949. Total energy = 6355.5647 kcal/mol (6348.6822 without restraints) Performing minimization step: 2950. Total energy = 6353.9210 kcal/mol (6347.0403 without restraints) Performing minimization step: 2951. Total energy = 6352.2789 kcal/mol (6345.4000 without restraints) Performing minimization step: 2952. Total energy = 6350.6381 kcal/mol (6343.7610 without restraints) Performing minimization step: 2953. Total energy = 6348.9991 kcal/mol (6342.1238 without restraints) Performing minimization step: 2954. Total energy = 6347.3611 kcal/mol (6340.4876 without restraints) Performing minimization step: 2955. Total energy = 6345.7248 kcal/mol (6338.8531 without restraints) Performing minimization step: 2956. Total energy = 6344.0897 kcal/mol (6337.2198 without restraints) Performing minimization step: 2957. Total energy = 6342.4562 kcal/mol (6335.5881 without restraints) Performing minimization step: 2958. Total energy = 6340.8239 kcal/mol (6333.9576 without restraints) Performing minimization step: 2959. Total energy = 6339.1930 kcal/mol (6332.3285 without restraints) Performing minimization step: 2960. Total energy = 6337.5635 kcal/mol (6330.7008 without restraints) Performing minimization step: 2961. Total energy = 6335.9355 kcal/mol (6329.0747 without restraints) Performing minimization step: 2962. Total energy = 6334.3089 kcal/mol (6327.4499 without restraints) Performing minimization step: 2963. Total energy = 6332.6837 kcal/mol (6325.8264 without restraints) Performing minimization step: 2964. Total energy = 6331.0600 kcal/mol (6324.2046 without restraints) Performing minimization step: 2965. Total energy = 6329.4377 kcal/mol (6322.5841 without restraints) Performing minimization step: 2966. Total energy = 6327.8170 kcal/mol (6320.9651 without restraints) Performing minimization step: 2967. Total energy = 6326.1973 kcal/mol (6319.3472 without restraints) Performing minimization step: 2968. Total energy = 6324.5796 kcal/mol (6317.7314 without restraints) Performing minimization step: 2969. Total energy = 6322.9629 kcal/mol (6316.1164 without restraints) Performing minimization step: 2970. Total energy = 6321.3477 kcal/mol (6314.5031 without restraints) Performing minimization step: 2971. Total energy = 6319.7338 kcal/mol (6312.8909 without restraints) Performing minimization step: 2972. Total energy = 6318.1214 kcal/mol (6311.2803 without restraints) Performing minimization step: 2973. Total energy = 6316.5104 kcal/mol (6309.6711 without restraints) Performing minimization step: 2974. Total energy = 6314.9005 kcal/mol (6308.0629 without restraints) Performing minimization step: 2975. Total energy = 6313.2921 kcal/mol (6306.4566 without restraints) Performing minimization step: 2976. Total energy = 6311.6855 kcal/mol (6304.8517 without restraints) Performing minimization step: 2977. Total energy = 6310.0799 kcal/mol (6303.2478 without restraints) Performing minimization step: 2978. Total energy = 6308.4758 kcal/mol (6301.6456 without restraints) Performing minimization step: 2979. Total energy = 6306.8730 kcal/mol (6300.0445 without restraints) Performing minimization step: 2980. Total energy = 6305.2716 kcal/mol (6298.4449 without restraints) Performing minimization step: 2981. Total energy = 6303.6713 kcal/mol (6296.8464 without restraints) Performing minimization step: 2982. Total energy = 6302.0728 kcal/mol (6295.2499 without restraints) Performing minimization step: 2983. Total energy = 6300.4758 kcal/mol (6293.6545 without restraints) Performing minimization step: 2984. Total energy = 6298.8802 kcal/mol (6292.0607 without restraints) Performing minimization step: 2985. Total energy = 6297.2856 kcal/mol (6290.4680 without restraints) Performing minimization step: 2986. Total energy = 6295.6924 kcal/mol (6288.8765 without restraints) Performing minimization step: 2987. Total energy = 6294.1008 kcal/mol (6287.2867 without restraints) Performing minimization step: 2988. Total energy = 6292.5104 kcal/mol (6285.6981 without restraints) Performing minimization step: 2989. Total energy = 6290.9216 kcal/mol (6284.1115 without restraints) Performing minimization step: 2990. Total energy = 6289.3348 kcal/mol (6282.5265 without restraints) Performing minimization step: 2991. Total energy = 6287.7494 kcal/mol (6280.9427 without restraints) Performing minimization step: 2992. Total energy = 6286.1651 kcal/mol (6279.3600 without restraints) Performing minimization step: 2993. Total energy = 6284.5814 kcal/mol (6277.7781 without restraints) Performing minimization step: 2994. Total energy = 6282.9993 kcal/mol (6276.1979 without restraints) Performing minimization step: 2995. Total energy = 6281.4186 kcal/mol (6274.6191 without restraints) Performing minimization step: 2996. Total energy = 6279.8393 kcal/mol (6273.0415 without restraints) Performing minimization step: 2997. Total energy = 6278.2619 kcal/mol (6271.4658 without restraints) Performing minimization step: 2998. Total energy = 6276.6855 kcal/mol (6269.8912 without restraints) Performing minimization step: 2999. Total energy = 6275.1104 kcal/mol (6268.3179 without restraints) Performing minimization step: 3000. Total energy = 6273.5367 kcal/mol (6266.7460 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 6271.9642 kcal/mol (6265.1753 without restraints) Performing minimization step: 3002. Total energy = 6270.3934 kcal/mol (6263.6063 without restraints) Performing minimization step: 3003. Total energy = 6268.8235 kcal/mol (6262.0383 without restraints) Performing minimization step: 3004. Total energy = 6267.2551 kcal/mol (6260.4716 without restraints) Performing minimization step: 3005. Total energy = 6265.6877 kcal/mol (6258.9061 without restraints) Performing minimization step: 3006. Total energy = 6264.1225 kcal/mol (6257.3426 without restraints) Performing minimization step: 3007. Total energy = 6262.5580 kcal/mol (6255.7800 without restraints) Performing minimization step: 3008. Total energy = 6260.9950 kcal/mol (6254.2187 without restraints) Performing minimization step: 3009. Total energy = 6259.4336 kcal/mol (6252.6592 without restraints) Performing minimization step: 3010. Total energy = 6257.8733 kcal/mol (6251.1007 without restraints) Performing minimization step: 3011. Total energy = 6256.3146 kcal/mol (6249.5437 without restraints) Performing minimization step: 3012. Total energy = 6254.7567 kcal/mol (6247.9875 without restraints) Performing minimization step: 3013. Total energy = 6253.2000 kcal/mol (6246.4328 without restraints) Performing minimization step: 3014. Total energy = 6251.6451 kcal/mol (6244.8796 without restraints) Performing minimization step: 3015. Total energy = 6250.0922 kcal/mol (6243.3285 without restraints) Performing minimization step: 3016. Total energy = 6248.5400 kcal/mol (6241.7781 without restraints) Performing minimization step: 3017. Total energy = 6246.9893 kcal/mol (6240.2292 without restraints) Performing minimization step: 3018. Total energy = 6245.4399 kcal/mol (6238.6816 without restraints) Performing minimization step: 3019. Total energy = 6243.8917 kcal/mol (6237.1352 without restraints) Performing minimization step: 3020. Total energy = 6242.3454 kcal/mol (6235.5907 without restraints) Performing minimization step: 3021. Total energy = 6240.7999 kcal/mol (6234.0470 without restraints) Performing minimization step: 3022. Total energy = 6239.2558 kcal/mol (6232.5047 without restraints) Performing minimization step: 3023. Total energy = 6237.7129 kcal/mol (6230.9636 without restraints) Performing minimization step: 3024. Total energy = 6236.1718 kcal/mol (6229.4242 without restraints) Performing minimization step: 3025. Total energy = 6234.6318 kcal/mol (6227.8861 without restraints) Performing minimization step: 3026. Total energy = 6233.0936 kcal/mol (6226.3496 without restraints) Performing minimization step: 3027. Total energy = 6231.5562 kcal/mol (6224.8142 without restraints) Performing minimization step: 3028. Total energy = 6230.0201 kcal/mol (6223.2798 without restraints) Performing minimization step: 3029. Total energy = 6228.4853 kcal/mol (6221.7469 without restraints) Performing minimization step: 3030. Total energy = 6226.9521 kcal/mol (6220.2154 without restraints) Performing minimization step: 3031. Total energy = 6225.4201 kcal/mol (6218.6852 without restraints) Performing minimization step: 3032. Total energy = 6223.8899 kcal/mol (6217.1567 without restraints) Performing minimization step: 3033. Total energy = 6222.3606 kcal/mol (6215.6292 without restraints) Performing minimization step: 3034. Total energy = 6220.8323 kcal/mol (6214.1029 without restraints) Performing minimization step: 3035. Total energy = 6219.3056 kcal/mol (6212.5779 without restraints) Performing minimization step: 3036. Total energy = 6217.7801 kcal/mol (6211.0541 without restraints) Performing minimization step: 3037. Total energy = 6216.2552 kcal/mol (6209.5310 without restraints) Performing minimization step: 3038. Total energy = 6214.7322 kcal/mol (6208.0098 without restraints) Performing minimization step: 3039. Total energy = 6213.2108 kcal/mol (6206.4902 without restraints) Performing minimization step: 3040. Total energy = 6211.6907 kcal/mol (6204.9719 without restraints) Performing minimization step: 3041. Total energy = 6210.1717 kcal/mol (6203.4546 without restraints) Performing minimization step: 3042. Total energy = 6208.6542 kcal/mol (6201.9389 without restraints) Performing minimization step: 3043. Total energy = 6207.1380 kcal/mol (6200.4246 without restraints) Performing minimization step: 3044. Total energy = 6205.6229 kcal/mol (6198.9113 without restraints) Performing minimization step: 3045. Total energy = 6204.1097 kcal/mol (6197.3999 without restraints) Performing minimization step: 3046. Total energy = 6202.5975 kcal/mol (6195.8895 without restraints) Performing minimization step: 3047. Total energy = 6201.0861 kcal/mol (6194.3798 without restraints) Performing minimization step: 3048. Total energy = 6199.5761 kcal/mol (6192.8717 without restraints) Performing minimization step: 3049. Total energy = 6198.0680 kcal/mol (6191.3655 without restraints) Performing minimization step: 3050. Total energy = 6196.5609 kcal/mol (6189.8601 without restraints) Performing minimization step: 3051. Total energy = 6195.0553 kcal/mol (6188.3562 without restraints) Performing minimization step: 3052. Total energy = 6193.5509 kcal/mol (6186.8537 without restraints) Performing minimization step: 3053. Total energy = 6192.0479 kcal/mol (6185.3524 without restraints) Performing minimization step: 3054. Total energy = 6190.5454 kcal/mol (6183.8517 without restraints) Performing minimization step: 3055. Total energy = 6189.0450 kcal/mol (6182.3531 without restraints) Performing minimization step: 3056. Total energy = 6187.5456 kcal/mol (6180.8555 without restraints) Performing minimization step: 3057. Total energy = 6186.0477 kcal/mol (6179.3596 without restraints) Performing minimization step: 3058. Total energy = 6184.5516 kcal/mol (6177.8651 without restraints) Performing minimization step: 3059. Total energy = 6183.0562 kcal/mol (6176.3715 without restraints) Performing minimization step: 3060. Total energy = 6181.5622 kcal/mol (6174.8793 without restraints) Performing minimization step: 3061. Total energy = 6180.0696 kcal/mol (6173.3886 without restraints) Performing minimization step: 3062. Total energy = 6178.5784 kcal/mol (6171.8991 without restraints) Performing minimization step: 3063. Total energy = 6177.0884 kcal/mol (6170.4108 without restraints) Performing minimization step: 3064. Total energy = 6175.5995 kcal/mol (6168.9237 without restraints) Performing minimization step: 3065. Total energy = 6174.1121 kcal/mol (6167.4381 without restraints) Performing minimization step: 3066. Total energy = 6172.6259 kcal/mol (6165.9537 without restraints) Performing minimization step: 3067. Total energy = 6171.1409 kcal/mol (6164.4705 without restraints) Performing minimization step: 3068. Total energy = 6169.6571 kcal/mol (6162.9885 without restraints) Performing minimization step: 3069. Total energy = 6168.1748 kcal/mol (6161.5080 without restraints) Performing minimization step: 3070. Total energy = 6166.6935 kcal/mol (6160.0286 without restraints) Performing minimization step: 3071. Total energy = 6165.2137 kcal/mol (6158.5505 without restraints) Performing minimization step: 3072. Total energy = 6163.7352 kcal/mol (6157.0738 without restraints) Performing minimization step: 3073. Total energy = 6162.2579 kcal/mol (6155.5983 without restraints) Performing minimization step: 3074. Total energy = 6160.7820 kcal/mol (6154.1243 without restraints) Performing minimization step: 3075. Total energy = 6159.3073 kcal/mol (6152.6512 without restraints) Performing minimization step: 3076. Total energy = 6157.8338 kcal/mol (6151.1795 without restraints) Performing minimization step: 3077. Total energy = 6156.3618 kcal/mol (6149.7094 without restraints) Performing minimization step: 3078. Total energy = 6154.8911 kcal/mol (6148.2404 without restraints) Performing minimization step: 3079. Total energy = 6153.4215 kcal/mol (6146.7726 without restraints) Performing minimization step: 3080. Total energy = 6151.9531 kcal/mol (6145.3060 without restraints) Performing minimization step: 3081. Total energy = 6150.4860 kcal/mol (6143.8407 without restraints) Performing minimization step: 3082. Total energy = 6149.0202 kcal/mol (6142.3767 without restraints) Performing minimization step: 3083. Total energy = 6147.5557 kcal/mol (6140.9140 without restraints) Performing minimization step: 3084. Total energy = 6146.0925 kcal/mol (6139.4525 without restraints) Performing minimization step: 3085. Total energy = 6144.6308 kcal/mol (6137.9928 without restraints) Performing minimization step: 3086. Total energy = 6143.1711 kcal/mol (6136.5348 without restraints) Performing minimization step: 3087. Total energy = 6141.7121 kcal/mol (6135.0775 without restraints) Performing minimization step: 3088. Total energy = 6140.2540 kcal/mol (6133.6212 without restraints) Performing minimization step: 3089. Total energy = 6138.7971 kcal/mol (6132.1661 without restraints) Performing minimization step: 3090. Total energy = 6137.3419 kcal/mol (6130.7127 without restraints) Performing minimization step: 3091. Total energy = 6135.8879 kcal/mol (6129.2605 without restraints) Performing minimization step: 3092. Total energy = 6134.4348 kcal/mol (6127.8092 without restraints) Performing minimization step: 3093. Total energy = 6132.9835 kcal/mol (6126.3597 without restraints) Performing minimization step: 3094. Total energy = 6131.5330 kcal/mol (6124.9110 without restraints) Performing minimization step: 3095. Total energy = 6130.0838 kcal/mol (6123.4635 without restraints) Performing minimization step: 3096. Total energy = 6128.6357 kcal/mol (6122.0171 without restraints) Performing minimization step: 3097. Total energy = 6127.1890 kcal/mol (6120.5723 without restraints) Performing minimization step: 3098. Total energy = 6125.7442 kcal/mol (6119.1293 without restraints) Performing minimization step: 3099. Total energy = 6124.3004 kcal/mol (6117.6873 without restraints) Performing minimization step: 3100. Total energy = 6122.8575 kcal/mol (6116.2462 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 6121.4159 kcal/mol (6114.8065 without restraints) Performing minimization step: 3102. Total energy = 6119.9757 kcal/mol (6113.3680 without restraints) Performing minimization step: 3103. Total energy = 6118.5368 kcal/mol (6111.9309 without restraints) Performing minimization step: 3104. Total energy = 6117.0988 kcal/mol (6110.4947 without restraints) Performing minimization step: 3105. Total energy = 6115.6623 kcal/mol (6109.0599 without restraints) Performing minimization step: 3106. Total energy = 6114.2268 kcal/mol (6107.6262 without restraints) Performing minimization step: 3107. Total energy = 6112.7927 kcal/mol (6106.1939 without restraints) Performing minimization step: 3108. Total energy = 6111.3600 kcal/mol (6104.7631 without restraints) Performing minimization step: 3109. Total energy = 6109.9285 kcal/mol (6103.3333 without restraints) Performing minimization step: 3110. Total energy = 6108.4983 kcal/mol (6101.9048 without restraints) Performing minimization step: 3111. Total energy = 6107.0694 kcal/mol (6100.4778 without restraints) Performing minimization step: 3112. Total energy = 6105.6419 kcal/mol (6099.0521 without restraints) Performing minimization step: 3113. Total energy = 6104.2154 kcal/mol (6097.6273 without restraints) Performing minimization step: 3114. Total energy = 6102.7902 kcal/mol (6096.2039 without restraints) Performing minimization step: 3115. Total energy = 6101.3666 kcal/mol (6094.7822 without restraints) Performing minimization step: 3116. Total energy = 6099.9440 kcal/mol (6093.3613 without restraints) Performing minimization step: 3117. Total energy = 6098.5227 kcal/mol (6091.9418 without restraints) Performing minimization step: 3118. Total energy = 6097.1029 kcal/mol (6090.5238 without restraints) Performing minimization step: 3119. Total energy = 6095.6840 kcal/mol (6089.1066 without restraints) Performing minimization step: 3120. Total energy = 6094.2671 kcal/mol (6087.6915 without restraints) Performing minimization step: 3121. Total energy = 6092.8506 kcal/mol (6086.2768 without restraints) Performing minimization step: 3122. Total energy = 6091.4354 kcal/mol (6084.8634 without restraints) Performing minimization step: 3123. Total energy = 6090.0216 kcal/mol (6083.4515 without restraints) Performing minimization step: 3124. Total energy = 6088.6089 kcal/mol (6082.0405 without restraints) Performing minimization step: 3125. Total energy = 6087.1974 kcal/mol (6080.6308 without restraints) Performing minimization step: 3126. Total energy = 6085.7875 kcal/mol (6079.2227 without restraints) Performing minimization step: 3127. Total energy = 6084.3786 kcal/mol (6077.8155 without restraints) Performing minimization step: 3128. Total energy = 6082.9708 kcal/mol (6076.4096 without restraints) Performing minimization step: 3129. Total energy = 6081.5648 kcal/mol (6075.0055 without restraints) Performing minimization step: 3130. Total energy = 6080.1599 kcal/mol (6073.6022 without restraints) Performing minimization step: 3131. Total energy = 6078.7565 kcal/mol (6072.2008 without restraints) Performing minimization step: 3132. Total energy = 6077.3548 kcal/mol (6070.8010 without restraints) Performing minimization step: 3133. Total energy = 6075.9542 kcal/mol (6069.4019 without restraints) Performing minimization step: 3134. Total energy = 6074.5540 kcal/mol (6068.0035 without restraints) Performing minimization step: 3135. Total energy = 6073.1551 kcal/mol (6066.6063 without restraints) Performing minimization step: 3136. Total energy = 6071.7574 kcal/mol (6065.2104 without restraints) Performing minimization step: 3137. Total energy = 6070.3607 kcal/mol (6063.8155 without restraints) Performing minimization step: 3138. Total energy = 6068.9653 kcal/mol (6062.4219 without restraints) Performing minimization step: 3139. Total energy = 6067.5713 kcal/mol (6061.0297 without restraints) Performing minimization step: 3140. Total energy = 6066.1783 kcal/mol (6059.6385 without restraints) Performing minimization step: 3141. Total energy = 6064.7869 kcal/mol (6058.2489 without restraints) Performing minimization step: 3142. Total energy = 6063.3969 kcal/mol (6056.8607 without restraints) Performing minimization step: 3143. Total energy = 6062.0080 kcal/mol (6055.4736 without restraints) Performing minimization step: 3144. Total energy = 6060.6203 kcal/mol (6054.0876 without restraints) Performing minimization step: 3145. Total energy = 6059.2337 kcal/mol (6052.7028 without restraints) Performing minimization step: 3146. Total energy = 6057.8485 kcal/mol (6051.3195 without restraints) Performing minimization step: 3147. Total energy = 6056.4645 kcal/mol (6049.9372 without restraints) Performing minimization step: 3148. Total energy = 6055.0821 kcal/mol (6048.5565 without restraints) Performing minimization step: 3149. Total energy = 6053.7004 kcal/mol (6047.1767 without restraints) Performing minimization step: 3150. Total energy = 6052.3199 kcal/mol (6045.7979 without restraints) Performing minimization step: 3151. Total energy = 6050.9410 kcal/mol (6044.4208 without restraints) Performing minimization step: 3152. Total energy = 6049.5634 kcal/mol (6043.0449 without restraints) Performing minimization step: 3153. Total energy = 6048.1868 kcal/mol (6041.6702 without restraints) Performing minimization step: 3154. Total energy = 6046.8112 kcal/mol (6040.2963 without restraints) Performing minimization step: 3155. Total energy = 6045.4377 kcal/mol (6038.9248 without restraints) Performing minimization step: 3156. Total energy = 6044.0648 kcal/mol (6037.5535 without restraints) Performing minimization step: 3157. Total energy = 6042.6931 kcal/mol (6036.1836 without restraints) Performing minimization step: 3158. Total energy = 6041.3228 kcal/mol (6034.8151 without restraints) Performing minimization step: 3159. Total energy = 6039.9537 kcal/mol (6033.4476 without restraints) Performing minimization step: 3160. Total energy = 6038.5857 kcal/mol (6032.0815 without restraints) Performing minimization step: 3161. Total energy = 6037.2188 kcal/mol (6030.7164 without restraints) Performing minimization step: 3162. Total energy = 6035.8532 kcal/mol (6029.3526 without restraints) Performing minimization step: 3163. Total energy = 6034.4889 kcal/mol (6027.9902 without restraints) Performing minimization step: 3164. Total energy = 6033.1259 kcal/mol (6026.6289 without restraints) Performing minimization step: 3165. Total energy = 6031.7641 kcal/mol (6025.2689 without restraints) Performing minimization step: 3166. Total energy = 6030.4035 kcal/mol (6023.9101 without restraints) Performing minimization step: 3167. Total energy = 6029.0443 kcal/mol (6022.5527 without restraints) Performing minimization step: 3168. Total energy = 6027.6862 kcal/mol (6021.1963 without restraints) Performing minimization step: 3169. Total energy = 6026.3290 kcal/mol (6019.8409 without restraints) Performing minimization step: 3170. Total energy = 6024.9733 kcal/mol (6018.4870 without restraints) Performing minimization step: 3171. Total energy = 6023.6192 kcal/mol (6017.1347 without restraints) Performing minimization step: 3172. Total energy = 6022.2664 kcal/mol (6015.7837 without restraints) Performing minimization step: 3173. Total energy = 6020.9145 kcal/mol (6014.4335 without restraints) Performing minimization step: 3174. Total energy = 6019.5641 kcal/mol (6013.0849 without restraints) Performing minimization step: 3175. Total energy = 6018.2150 kcal/mol (6011.7376 without restraints) Performing minimization step: 3176. Total energy = 6016.8666 kcal/mol (6010.3908 without restraints) Performing minimization step: 3177. Total energy = 6015.5195 kcal/mol (6009.0458 without restraints) Performing minimization step: 3178. Total energy = 6014.1738 kcal/mol (6007.7018 without restraints) Performing minimization step: 3179. Total energy = 6012.8292 kcal/mol (6006.3589 without restraints) Performing minimization step: 3180. Total energy = 6011.4860 kcal/mol (6005.0175 without restraints) Performing minimization step: 3181. Total energy = 6010.1438 kcal/mol (6003.6771 without restraints) Performing minimization step: 3182. Total energy = 6008.8037 kcal/mol (6002.3387 without restraints) Performing minimization step: 3183. Total energy = 6007.4645 kcal/mol (6001.0013 without restraints) Performing minimization step: 3184. Total energy = 6006.1260 kcal/mol (5999.6646 without restraints) Performing minimization step: 3185. Total energy = 6004.7892 kcal/mol (5998.3297 without restraints) Performing minimization step: 3186. Total energy = 6003.4531 kcal/mol (5996.9954 without restraints) Performing minimization step: 3187. Total energy = 6002.1185 kcal/mol (5995.6624 without restraints) Performing minimization step: 3188. Total energy = 6000.7849 kcal/mol (5994.3306 without restraints) Performing minimization step: 3189. Total energy = 5999.4525 kcal/mol (5993.0000 without restraints) Performing minimization step: 3190. Total energy = 5998.1215 kcal/mol (5991.6709 without restraints) Performing minimization step: 3191. Total energy = 5996.7916 kcal/mol (5990.3427 without restraints) Performing minimization step: 3192. Total energy = 5995.4629 kcal/mol (5989.0158 without restraints) Performing minimization step: 3193. Total energy = 5994.1354 kcal/mol (5987.6900 without restraints) Performing minimization step: 3194. Total energy = 5992.8095 kcal/mol (5986.3659 without restraints) Performing minimization step: 3195. Total energy = 5991.4844 kcal/mol (5985.0426 without restraints) Performing minimization step: 3196. Total energy = 5990.1606 kcal/mol (5983.7206 without restraints) Performing minimization step: 3197. Total energy = 5988.8382 kcal/mol (5982.3999 without restraints) Performing minimization step: 3198. Total energy = 5987.5168 kcal/mol (5981.0803 without restraints) Performing minimization step: 3199. Total energy = 5986.1968 kcal/mol (5979.7621 without restraints) Performing minimization step: 3200. Total energy = 5984.8779 kcal/mol (5978.4451 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 5983.5612 kcal/mol (5977.1302 without restraints) Performing minimization step: 3202. Total energy = 5982.2450 kcal/mol (5975.8157 without restraints) Performing minimization step: 3203. Total energy = 5980.9298 kcal/mol (5974.5022 without restraints) Performing minimization step: 3204. Total energy = 5979.6157 kcal/mol (5973.1899 without restraints) Performing minimization step: 3205. Total energy = 5978.3029 kcal/mol (5971.8789 without restraints) Performing minimization step: 3206. Total energy = 5976.9920 kcal/mol (5970.5698 without restraints) Performing minimization step: 3207. Total energy = 5975.6817 kcal/mol (5969.2613 without restraints) Performing minimization step: 3208. Total energy = 5974.3726 kcal/mol (5967.9539 without restraints) Performing minimization step: 3209. Total energy = 5973.0645 kcal/mol (5966.6476 without restraints) Performing minimization step: 3210. Total energy = 5971.7581 kcal/mol (5965.3430 without restraints) Performing minimization step: 3211. Total energy = 5970.4525 kcal/mol (5964.0392 without restraints) Performing minimization step: 3212. Total energy = 5969.1480 kcal/mol (5962.7364 without restraints) Performing minimization step: 3213. Total energy = 5967.8449 kcal/mol (5961.4353 without restraints) Performing minimization step: 3214. Total energy = 5966.5429 kcal/mol (5960.1349 without restraints) Performing minimization step: 3215. Total energy = 5965.2421 kcal/mol (5958.8359 without restraints) Performing minimization step: 3216. Total energy = 5963.9428 kcal/mol (5957.5384 without restraints) Performing minimization step: 3217. Total energy = 5962.6445 kcal/mol (5956.2418 without restraints) Performing minimization step: 3218. Total energy = 5961.3472 kcal/mol (5954.9463 without restraints) Performing minimization step: 3219. Total energy = 5960.0517 kcal/mol (5953.6526 without restraints) Performing minimization step: 3220. Total energy = 5958.7577 kcal/mol (5952.3604 without restraints) Performing minimization step: 3221. Total energy = 5957.4642 kcal/mol (5951.0687 without restraints) Performing minimization step: 3222. Total energy = 5956.1723 kcal/mol (5949.7785 without restraints) Performing minimization step: 3223. Total energy = 5954.8810 kcal/mol (5948.4889 without restraints) Performing minimization step: 3224. Total energy = 5953.5911 kcal/mol (5947.2010 without restraints) Performing minimization step: 3225. Total energy = 5952.3026 kcal/mol (5945.9142 without restraints) Performing minimization step: 3226. Total energy = 5951.0161 kcal/mol (5944.6295 without restraints) Performing minimization step: 3227. Total energy = 5949.7300 kcal/mol (5943.3451 without restraints) Performing minimization step: 3228. Total energy = 5948.4456 kcal/mol (5942.0625 without restraints) Performing minimization step: 3229. Total energy = 5947.1618 kcal/mol (5940.7805 without restraints) Performing minimization step: 3230. Total energy = 5945.8793 kcal/mol (5939.4998 without restraints) Performing minimization step: 3231. Total energy = 5944.5981 kcal/mol (5938.2204 without restraints) Performing minimization step: 3232. Total energy = 5943.3180 kcal/mol (5936.9420 without restraints) Performing minimization step: 3233. Total energy = 5942.0396 kcal/mol (5935.6654 without restraints) Performing minimization step: 3234. Total energy = 5940.7619 kcal/mol (5934.3895 without restraints) Performing minimization step: 3235. Total energy = 5939.4860 kcal/mol (5933.1155 without restraints) Performing minimization step: 3236. Total energy = 5938.2105 kcal/mol (5931.8417 without restraints) Performing minimization step: 3237. Total energy = 5936.9372 kcal/mol (5930.5703 without restraints) Performing minimization step: 3238. Total energy = 5935.6645 kcal/mol (5929.2993 without restraints) Performing minimization step: 3239. Total energy = 5934.3935 kcal/mol (5928.0299 without restraints) Performing minimization step: 3240. Total energy = 5933.1229 kcal/mol (5926.7611 without restraints) Performing minimization step: 3241. Total energy = 5931.8535 kcal/mol (5925.4935 without restraints) Performing minimization step: 3242. Total energy = 5930.5855 kcal/mol (5924.2274 without restraints) Performing minimization step: 3243. Total energy = 5929.3186 kcal/mol (5922.9622 without restraints) Performing minimization step: 3244. Total energy = 5928.0532 kcal/mol (5921.6985 without restraints) Performing minimization step: 3245. Total energy = 5926.7896 kcal/mol (5920.4366 without restraints) Performing minimization step: 3246. Total energy = 5925.5264 kcal/mol (5919.1753 without restraints) Performing minimization step: 3247. Total energy = 5924.2643 kcal/mol (5917.9149 without restraints) Performing minimization step: 3248. Total energy = 5923.0034 kcal/mol (5916.6558 without restraints) Performing minimization step: 3249. Total energy = 5921.7439 kcal/mol (5915.3981 without restraints) Performing minimization step: 3250. Total energy = 5920.4854 kcal/mol (5914.1413 without restraints) Performing minimization step: 3251. Total energy = 5919.2279 kcal/mol (5912.8857 without restraints) Performing minimization step: 3252. Total energy = 5917.9721 kcal/mol (5911.6317 without restraints) Performing minimization step: 3253. Total energy = 5916.7175 kcal/mol (5910.3789 without restraints) Performing minimization step: 3254. Total energy = 5915.4641 kcal/mol (5909.1272 without restraints) Performing minimization step: 3255. Total energy = 5914.2123 kcal/mol (5907.8771 without restraints) Performing minimization step: 3256. Total energy = 5912.9614 kcal/mol (5906.6284 without restraints) Performing minimization step: 3257. Total energy = 5911.7117 kcal/mol (5905.3802 without restraints) Performing minimization step: 3258. Total energy = 5910.4628 kcal/mol (5904.1330 without restraints) Performing minimization step: 3259. Total energy = 5909.2151 kcal/mol (5902.8872 without restraints) Performing minimization step: 3260. Total energy = 5907.9686 kcal/mol (5901.6424 without restraints) Performing minimization step: 3261. Total energy = 5906.7231 kcal/mol (5900.3985 without restraints) Performing minimization step: 3262. Total energy = 5905.4791 kcal/mol (5899.1565 without restraints) Performing minimization step: 3263. Total energy = 5904.2363 kcal/mol (5897.9153 without restraints) Performing minimization step: 3264. Total energy = 5902.9944 kcal/mol (5896.6752 without restraints) Performing minimization step: 3265. Total energy = 5901.7539 kcal/mol (5895.4366 without restraints) Performing minimization step: 3266. Total energy = 5900.5147 kcal/mol (5894.1991 without restraints) Performing minimization step: 3267. Total energy = 5899.2765 kcal/mol (5892.9627 without restraints) Performing minimization step: 3268. Total energy = 5898.0395 kcal/mol (5891.7274 without restraints) Performing minimization step: 3269. Total energy = 5896.8035 kcal/mol (5890.4932 without restraints) Performing minimization step: 3270. Total energy = 5895.5692 kcal/mol (5889.2607 without restraints) Performing minimization step: 3271. Total energy = 5894.3359 kcal/mol (5888.0291 without restraints) Performing minimization step: 3272. Total energy = 5893.1038 kcal/mol (5886.7988 without restraints) Performing minimization step: 3273. Total energy = 5891.8723 kcal/mol (5885.5691 without restraints) Performing minimization step: 3274. Total energy = 5890.6424 kcal/mol (5884.3410 without restraints) Performing minimization step: 3275. Total energy = 5889.4138 kcal/mol (5883.1141 without restraints) Performing minimization step: 3276. Total energy = 5888.1862 kcal/mol (5881.8883 without restraints) Performing minimization step: 3277. Total energy = 5886.9603 kcal/mol (5880.6642 without restraints) Performing minimization step: 3278. Total energy = 5885.7351 kcal/mol (5879.4407 without restraints) Performing minimization step: 3279. Total energy = 5884.5113 kcal/mol (5878.2187 without restraints) Performing minimization step: 3280. Total energy = 5883.2886 kcal/mol (5876.9979 without restraints) Performing minimization step: 3281. Total energy = 5882.0670 kcal/mol (5875.7779 without restraints) Performing minimization step: 3282. Total energy = 5880.8466 kcal/mol (5874.5594 without restraints) Performing minimization step: 3283. Total energy = 5879.6276 kcal/mol (5873.3421 without restraints) Performing minimization step: 3284. Total energy = 5878.4095 kcal/mol (5872.1258 without restraints) Performing minimization step: 3285. Total energy = 5877.1923 kcal/mol (5870.9104 without restraints) Performing minimization step: 3286. Total energy = 5875.9767 kcal/mol (5869.6966 without restraints) Performing minimization step: 3287. Total energy = 5874.7622 kcal/mol (5868.4838 without restraints) Performing minimization step: 3288. Total energy = 5873.5487 kcal/mol (5867.2720 without restraints) Performing minimization step: 3289. Total energy = 5872.3364 kcal/mol (5866.0615 without restraints) Performing minimization step: 3290. Total energy = 5871.1253 kcal/mol (5864.8523 without restraints) Performing minimization step: 3291. Total energy = 5869.9154 kcal/mol (5863.6441 without restraints) Performing minimization step: 3292. Total energy = 5868.7066 kcal/mol (5862.4371 without restraints) Performing minimization step: 3293. Total energy = 5867.4992 kcal/mol (5861.2315 without restraints) Performing minimization step: 3294. Total energy = 5866.2929 kcal/mol (5860.0269 without restraints) Performing minimization step: 3295. Total energy = 5865.0885 kcal/mol (5858.8242 without restraints) Performing minimization step: 3296. Total energy = 5863.8842 kcal/mol (5857.6218 without restraints) Performing minimization step: 3297. Total energy = 5862.6816 kcal/mol (5856.4210 without restraints) Performing minimization step: 3298. Total energy = 5861.4801 kcal/mol (5855.2212 without restraints) Performing minimization step: 3299. Total energy = 5860.2797 kcal/mol (5854.0226 without restraints) Performing minimization step: 3300. Total energy = 5859.0808 kcal/mol (5852.8257 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 5857.8829 kcal/mol (5851.6293 without restraints) Performing minimization step: 3302. Total energy = 5856.6863 kcal/mol (5850.4346 without restraints) Performing minimization step: 3303. Total energy = 5855.4905 kcal/mol (5849.2404 without restraints) Performing minimization step: 3304. Total energy = 5854.2957 kcal/mol (5848.0475 without restraints) Performing minimization step: 3305. Total energy = 5853.1023 kcal/mol (5846.8559 without restraints) Performing minimization step: 3306. Total energy = 5851.9102 kcal/mol (5845.6655 without restraints) Performing minimization step: 3307. Total energy = 5850.7189 kcal/mol (5844.4760 without restraints) Performing minimization step: 3308. Total energy = 5849.5288 kcal/mol (5843.2876 without restraints) Performing minimization step: 3309. Total energy = 5848.3396 kcal/mol (5842.1002 without restraints) Performing minimization step: 3310. Total energy = 5847.1521 kcal/mol (5840.9144 without restraints) Performing minimization step: 3311. Total energy = 5845.9654 kcal/mol (5839.7295 without restraints) Performing minimization step: 3312. Total energy = 5844.7800 kcal/mol (5838.5460 without restraints) Performing minimization step: 3313. Total energy = 5843.5958 kcal/mol (5837.3634 without restraints) Performing minimization step: 3314. Total energy = 5842.4128 kcal/mol (5836.1822 without restraints) Performing minimization step: 3315. Total energy = 5841.2308 kcal/mol (5835.0019 without restraints) Performing minimization step: 3316. Total energy = 5840.0500 kcal/mol (5833.8230 without restraints) Performing minimization step: 3317. Total energy = 5838.8703 kcal/mol (5832.6450 without restraints) Performing minimization step: 3318. Total energy = 5837.6917 kcal/mol (5831.4682 without restraints) Performing minimization step: 3319. Total energy = 5836.5146 kcal/mol (5830.2928 without restraints) Performing minimization step: 3320. Total energy = 5835.3383 kcal/mol (5829.1183 without restraints) Performing minimization step: 3321. Total energy = 5834.1632 kcal/mol (5827.9450 without restraints) Performing minimization step: 3322. Total energy = 5832.9898 kcal/mol (5826.7733 without restraints) Performing minimization step: 3323. Total energy = 5831.8169 kcal/mol (5825.6022 without restraints) Performing minimization step: 3324. Total energy = 5830.6457 kcal/mol (5824.4327 without restraints) Performing minimization step: 3325. Total energy = 5829.4753 kcal/mol (5823.2643 without restraints) Performing minimization step: 3326. Total energy = 5828.3063 kcal/mol (5822.0968 without restraints) Performing minimization step: 3327. Total energy = 5827.1383 kcal/mol (5820.9310 without restraints) Performing minimization step: 3328. Total energy = 5825.9714 kcal/mol (5819.7656 without restraints) Performing minimization step: 3329. Total energy = 5824.8055 kcal/mol (5818.6014 without restraints) Performing minimization step: 3330. Total energy = 5823.6404 kcal/mol (5817.4380 without restraints) Performing minimization step: 3331. Total energy = 5822.4768 kcal/mol (5816.2762 without restraints) Performing minimization step: 3332. Total energy = 5821.3141 kcal/mol (5815.1152 without restraints) Performing minimization step: 3333. Total energy = 5820.1532 kcal/mol (5813.9561 without restraints) Performing minimization step: 3334. Total energy = 5818.9927 kcal/mol (5812.7975 without restraints) Performing minimization step: 3335. Total energy = 5817.8339 kcal/mol (5811.6404 without restraints) Performing minimization step: 3336. Total energy = 5816.6759 kcal/mol (5810.4841 without restraints) Performing minimization step: 3337. Total energy = 5815.5192 kcal/mol (5809.3293 without restraints) Performing minimization step: 3338. Total energy = 5814.3633 kcal/mol (5808.1751 without restraints) Performing minimization step: 3339. Total energy = 5813.2087 kcal/mol (5807.0222 without restraints) Performing minimization step: 3340. Total energy = 5812.0551 kcal/mol (5805.8704 without restraints) Performing minimization step: 3341. Total energy = 5810.9026 kcal/mol (5804.7196 without restraints) Performing minimization step: 3342. Total energy = 5809.7516 kcal/mol (5803.5704 without restraints) Performing minimization step: 3343. Total energy = 5808.6014 kcal/mol (5802.4220 without restraints) Performing minimization step: 3344. Total energy = 5807.4523 kcal/mol (5801.2747 without restraints) Performing minimization step: 3345. Total energy = 5806.3046 kcal/mol (5800.1287 without restraints) Performing minimization step: 3346. Total energy = 5805.1582 kcal/mol (5798.9841 without restraints) Performing minimization step: 3347. Total energy = 5804.0132 kcal/mol (5797.8408 without restraints) Performing minimization step: 3348. Total energy = 5802.8691 kcal/mol (5796.6985 without restraints) Performing minimization step: 3349. Total energy = 5801.7259 kcal/mol (5795.5572 without restraints) Performing minimization step: 3350. Total energy = 5800.5837 kcal/mol (5794.4166 without restraints) Performing minimization step: 3351. Total energy = 5799.4423 kcal/mol (5793.2770 without restraints) Performing minimization step: 3352. Total energy = 5798.3021 kcal/mol (5792.1384 without restraints) Performing minimization step: 3353. Total energy = 5797.1629 kcal/mol (5791.0011 without restraints) Performing minimization step: 3354. Total energy = 5796.0251 kcal/mol (5789.8650 without restraints) Performing minimization step: 3355. Total energy = 5794.8883 kcal/mol (5788.7300 without restraints) Performing minimization step: 3356. Total energy = 5793.7526 kcal/mol (5787.5961 without restraints) Performing minimization step: 3357. Total energy = 5792.6185 kcal/mol (5786.4639 without restraints) Performing minimization step: 3358. Total energy = 5791.4852 kcal/mol (5785.3322 without restraints) Performing minimization step: 3359. Total energy = 5790.3530 kcal/mol (5784.2018 without restraints) Performing minimization step: 3360. Total energy = 5789.2220 kcal/mol (5783.0725 without restraints) Performing minimization step: 3361. Total energy = 5788.0919 kcal/mol (5781.9442 without restraints) Performing minimization step: 3362. Total energy = 5786.9629 kcal/mol (5780.8170 without restraints) Performing minimization step: 3363. Total energy = 5785.8352 kcal/mol (5779.6910 without restraints) Performing minimization step: 3364. Total energy = 5784.7082 kcal/mol (5778.5656 without restraints) Performing minimization step: 3365. Total energy = 5783.5827 kcal/mol (5777.4420 without restraints) Performing minimization step: 3366. Total energy = 5782.4579 kcal/mol (5776.3189 without restraints) Performing minimization step: 3367. Total energy = 5781.3345 kcal/mol (5775.1974 without restraints) Performing minimization step: 3368. Total energy = 5780.2119 kcal/mol (5774.0765 without restraints) Performing minimization step: 3369. Total energy = 5779.0905 kcal/mol (5772.9569 without restraints) Performing minimization step: 3370. Total energy = 5777.9704 kcal/mol (5771.8386 without restraints) Performing minimization step: 3371. Total energy = 5776.8513 kcal/mol (5770.7211 without restraints) Performing minimization step: 3372. Total energy = 5775.7332 kcal/mol (5769.6047 without restraints) Performing minimization step: 3373. Total energy = 5774.6161 kcal/mol (5768.4894 without restraints) Performing minimization step: 3374. Total energy = 5773.5004 kcal/mol (5767.3755 without restraints) Performing minimization step: 3375. Total energy = 5772.3855 kcal/mol (5766.2624 without restraints) Performing minimization step: 3376. Total energy = 5771.2720 kcal/mol (5765.1506 without restraints) Performing minimization step: 3377. Total energy = 5770.1593 kcal/mol (5764.0396 without restraints) Performing minimization step: 3378. Total energy = 5769.0481 kcal/mol (5762.9302 without restraints) Performing minimization step: 3379. Total energy = 5767.9374 kcal/mol (5761.8212 without restraints) Performing minimization step: 3380. Total energy = 5766.8279 kcal/mol (5760.7135 without restraints) Performing minimization step: 3381. Total energy = 5765.7194 kcal/mol (5759.6067 without restraints) Performing minimization step: 3382. Total energy = 5764.6121 kcal/mol (5758.5012 without restraints) Performing minimization step: 3383. Total energy = 5763.5061 kcal/mol (5757.3969 without restraints) Performing minimization step: 3384. Total energy = 5762.4017 kcal/mol (5756.2943 without restraints) Performing minimization step: 3385. Total energy = 5761.2977 kcal/mol (5755.1921 without restraints) Performing minimization step: 3386. Total energy = 5760.1950 kcal/mol (5754.0912 without restraints) Performing minimization step: 3387. Total energy = 5759.0931 kcal/mol (5752.9910 without restraints) Performing minimization step: 3388. Total energy = 5757.9927 kcal/mol (5751.8923 without restraints) Performing minimization step: 3389. Total energy = 5756.8928 kcal/mol (5750.7942 without restraints) Performing minimization step: 3390. Total energy = 5755.7942 kcal/mol (5749.6973 without restraints) Performing minimization step: 3391. Total energy = 5754.6966 kcal/mol (5748.6017 without restraints) Performing minimization step: 3392. Total energy = 5753.6007 kcal/mol (5747.5074 without restraints) Performing minimization step: 3393. Total energy = 5752.5053 kcal/mol (5746.4136 without restraints) Performing minimization step: 3394. Total energy = 5751.4105 kcal/mol (5745.3206 without restraints) Performing minimization step: 3395. Total energy = 5750.3172 kcal/mol (5744.2292 without restraints) Performing minimization step: 3396. Total energy = 5749.2244 kcal/mol (5743.1379 without restraints) Performing minimization step: 3397. Total energy = 5748.1331 kcal/mol (5742.0485 without restraints) Performing minimization step: 3398. Total energy = 5747.0428 kcal/mol (5740.9599 without restraints) Performing minimization step: 3399. Total energy = 5745.9542 kcal/mol (5739.8730 without restraints) Performing minimization step: 3400. Total energy = 5744.8658 kcal/mol (5738.7864 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 5743.7787 kcal/mol (5737.7011 without restraints) Performing minimization step: 3402. Total energy = 5742.6927 kcal/mol (5736.6168 without restraints) Performing minimization step: 3403. Total energy = 5741.6076 kcal/mol (5735.5334 without restraints) Performing minimization step: 3404. Total energy = 5740.5236 kcal/mol (5734.4512 without restraints) Performing minimization step: 3405. Total energy = 5739.4406 kcal/mol (5733.3699 without restraints) Performing minimization step: 3406. Total energy = 5738.3588 kcal/mol (5732.2899 without restraints) Performing minimization step: 3407. Total energy = 5737.2784 kcal/mol (5731.2112 without restraints) Performing minimization step: 3408. Total energy = 5736.1985 kcal/mol (5730.1331 without restraints) Performing minimization step: 3409. Total energy = 5735.1198 kcal/mol (5729.0561 without restraints) Performing minimization step: 3410. Total energy = 5734.0425 kcal/mol (5727.9806 without restraints) Performing minimization step: 3411. Total energy = 5732.9656 kcal/mol (5726.9054 without restraints) Performing minimization step: 3412. Total energy = 5731.8899 kcal/mol (5725.8314 without restraints) Performing minimization step: 3413. Total energy = 5730.8152 kcal/mol (5724.7585 without restraints) Performing minimization step: 3414. Total energy = 5729.7418 kcal/mol (5723.6869 without restraints) Performing minimization step: 3415. Total energy = 5728.6692 kcal/mol (5722.6160 without restraints) Performing minimization step: 3416. Total energy = 5727.5976 kcal/mol (5721.5462 without restraints) Performing minimization step: 3417. Total energy = 5726.5270 kcal/mol (5720.4773 without restraints) Performing minimization step: 3418. Total energy = 5725.4577 kcal/mol (5719.4097 without restraints) Performing minimization step: 3419. Total energy = 5724.3893 kcal/mol (5718.3430 without restraints) Performing minimization step: 3420. Total energy = 5723.3220 kcal/mol (5717.2775 without restraints) Performing minimization step: 3421. Total energy = 5722.2555 kcal/mol (5716.2129 without restraints) Performing minimization step: 3422. Total energy = 5721.1902 kcal/mol (5715.1491 without restraints) Performing minimization step: 3423. Total energy = 5720.1258 kcal/mol (5714.0865 without restraints) Performing minimization step: 3424. Total energy = 5719.0624 kcal/mol (5713.0250 without restraints) Performing minimization step: 3425. Total energy = 5718.0004 kcal/mol (5711.9646 without restraints) Performing minimization step: 3426. Total energy = 5716.9391 kcal/mol (5710.9052 without restraints) Performing minimization step: 3427. Total energy = 5715.8789 kcal/mol (5709.8465 without restraints) Performing minimization step: 3428. Total energy = 5714.8199 kcal/mol (5708.7893 without restraints) Performing minimization step: 3429. Total energy = 5713.7619 kcal/mol (5707.7332 without restraints) Performing minimization step: 3430. Total energy = 5712.7051 kcal/mol (5706.6781 without restraints) Performing minimization step: 3431. Total energy = 5711.6488 kcal/mol (5705.6234 without restraints) Performing minimization step: 3432. Total energy = 5710.5935 kcal/mol (5704.5699 without restraints) Performing minimization step: 3433. Total energy = 5709.5394 kcal/mol (5703.5175 without restraints) Performing minimization step: 3434. Total energy = 5708.4861 kcal/mol (5702.4659 without restraints) Performing minimization step: 3435. Total energy = 5707.4336 kcal/mol (5701.4151 without restraints) Performing minimization step: 3436. Total energy = 5706.3822 kcal/mol (5700.3655 without restraints) Performing minimization step: 3437. Total energy = 5705.3318 kcal/mol (5699.3168 without restraints) Performing minimization step: 3438. Total energy = 5704.2826 kcal/mol (5698.2694 without restraints) Performing minimization step: 3439. Total energy = 5703.2342 kcal/mol (5697.2227 without restraints) Performing minimization step: 3440. Total energy = 5702.1870 kcal/mol (5696.1773 without restraints) Performing minimization step: 3441. Total energy = 5701.1407 kcal/mol (5695.1326 without restraints) Performing minimization step: 3442. Total energy = 5700.0954 kcal/mol (5694.0892 without restraints) Performing minimization step: 3443. Total energy = 5699.0512 kcal/mol (5693.0468 without restraints) Performing minimization step: 3444. Total energy = 5698.0078 kcal/mol (5692.0050 without restraints) Performing minimization step: 3445. Total energy = 5696.9654 kcal/mol (5690.9643 without restraints) Performing minimization step: 3446. Total energy = 5695.9243 kcal/mol (5689.9249 without restraints) Performing minimization step: 3447. Total energy = 5694.8838 kcal/mol (5688.8862 without restraints) Performing minimization step: 3448. Total energy = 5693.8445 kcal/mol (5687.8488 without restraints) Performing minimization step: 3449. Total energy = 5692.8062 kcal/mol (5686.8120 without restraints) Performing minimization step: 3450. Total energy = 5691.7687 kcal/mol (5685.7763 without restraints) Performing minimization step: 3451. Total energy = 5690.7322 kcal/mol (5684.7415 without restraints) Performing minimization step: 3452. Total energy = 5689.6967 kcal/mol (5683.7078 without restraints) Performing minimization step: 3453. Total energy = 5688.6625 kcal/mol (5682.6752 without restraints) Performing minimization step: 3454. Total energy = 5687.6289 kcal/mol (5681.6435 without restraints) Performing minimization step: 3455. Total energy = 5686.5967 kcal/mol (5680.6130 without restraints) Performing minimization step: 3456. Total energy = 5685.5651 kcal/mol (5679.5830 without restraints) Performing minimization step: 3457. Total energy = 5684.5344 kcal/mol (5678.5541 without restraints) Performing minimization step: 3458. Total energy = 5683.5047 kcal/mol (5677.5260 without restraints) Performing minimization step: 3459. Total energy = 5682.4762 kcal/mol (5676.4995 without restraints) Performing minimization step: 3460. Total energy = 5681.4486 kcal/mol (5675.4734 without restraints) Performing minimization step: 3461. Total energy = 5680.4217 kcal/mol (5674.4482 without restraints) Performing minimization step: 3462. Total energy = 5679.3959 kcal/mol (5673.4243 without restraints) Performing minimization step: 3463. Total energy = 5678.3710 kcal/mol (5672.4010 without restraints) Performing minimization step: 3464. Total energy = 5677.3474 kcal/mol (5671.3790 without restraints) Performing minimization step: 3465. Total energy = 5676.3244 kcal/mol (5670.3578 without restraints) Performing minimization step: 3466. Total energy = 5675.3022 kcal/mol (5669.3374 without restraints) Performing minimization step: 3467. Total energy = 5674.2812 kcal/mol (5668.3182 without restraints) Performing minimization step: 3468. Total energy = 5673.2611 kcal/mol (5667.2997 without restraints) Performing minimization step: 3469. Total energy = 5672.2421 kcal/mol (5666.2824 without restraints) Performing minimization step: 3470. Total energy = 5671.2237 kcal/mol (5665.2658 without restraints) Performing minimization step: 3471. Total energy = 5670.2064 kcal/mol (5664.2502 without restraints) Performing minimization step: 3472. Total energy = 5669.1900 kcal/mol (5663.2355 without restraints) Performing minimization step: 3473. Total energy = 5668.1743 kcal/mol (5662.2215 without restraints) Performing minimization step: 3474. Total energy = 5667.1598 kcal/mol (5661.2087 without restraints) Performing minimization step: 3475. Total energy = 5666.1466 kcal/mol (5660.1973 without restraints) Performing minimization step: 3476. Total energy = 5665.1342 kcal/mol (5659.1865 without restraints) Performing minimization step: 3477. Total energy = 5664.1224 kcal/mol (5658.1765 without restraints) Performing minimization step: 3478. Total energy = 5663.1118 kcal/mol (5657.1676 without restraints) Performing minimization step: 3479. Total energy = 5662.1021 kcal/mol (5656.1596 without restraints) Performing minimization step: 3480. Total energy = 5661.0930 kcal/mol (5655.1522 without restraints) Performing minimization step: 3481. Total energy = 5660.0851 kcal/mol (5654.1459 without restraints) Performing minimization step: 3482. Total energy = 5659.0783 kcal/mol (5653.1410 without restraints) Performing minimization step: 3483. Total energy = 5658.0722 kcal/mol (5652.1365 without restraints) Performing minimization step: 3484. Total energy = 5657.0673 kcal/mol (5651.1335 without restraints) Performing minimization step: 3485. Total energy = 5656.0633 kcal/mol (5650.1311 without restraints) Performing minimization step: 3486. Total energy = 5655.0605 kcal/mol (5649.1300 without restraints) Performing minimization step: 3487. Total energy = 5654.0582 kcal/mol (5648.1295 without restraints) Performing minimization step: 3488. Total energy = 5653.0567 kcal/mol (5647.1297 without restraints) Performing minimization step: 3489. Total energy = 5652.0561 kcal/mol (5646.1308 without restraints) Performing minimization step: 3490. Total energy = 5651.0565 kcal/mol (5645.1328 without restraints) Performing minimization step: 3491. Total energy = 5650.0577 kcal/mol (5644.1358 without restraints) Performing minimization step: 3492. Total energy = 5649.0599 kcal/mol (5643.1397 without restraints) Performing minimization step: 3493. Total energy = 5648.0630 kcal/mol (5642.1445 without restraints) Performing minimization step: 3494. Total energy = 5647.0670 kcal/mol (5641.1502 without restraints) Performing minimization step: 3495. Total energy = 5646.0717 kcal/mol (5640.1566 without restraints) Performing minimization step: 3496. Total energy = 5645.0772 kcal/mol (5639.1637 without restraints) Performing minimization step: 3497. Total energy = 5644.0837 kcal/mol (5638.1721 without restraints) Performing minimization step: 3498. Total energy = 5643.0919 kcal/mol (5637.1820 without restraints) Performing minimization step: 3499. Total energy = 5642.1006 kcal/mol (5636.1925 without restraints) Performing minimization step: 3500. Total energy = 5641.1101 kcal/mol (5635.2036 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 5640.1207 kcal/mol (5634.2158 without restraints) Performing minimization step: 3502. Total energy = 5639.1321 kcal/mol (5633.2290 without restraints) Performing minimization step: 3503. Total energy = 5638.1442 kcal/mol (5632.2428 without restraints) Performing minimization step: 3504. Total energy = 5637.1573 kcal/mol (5631.2576 without restraints) Performing minimization step: 3505. Total energy = 5636.1713 kcal/mol (5630.2733 without restraints) Performing minimization step: 3506. Total energy = 5635.1860 kcal/mol (5629.2897 without restraints) Performing minimization step: 3507. Total energy = 5634.2019 kcal/mol (5628.3073 without restraints) Performing minimization step: 3508. Total energy = 5633.2188 kcal/mol (5627.3259 without restraints) Performing minimization step: 3509. Total energy = 5632.2363 kcal/mol (5626.3450 without restraints) Performing minimization step: 3510. Total energy = 5631.2550 kcal/mol (5625.3655 without restraints) Performing minimization step: 3511. Total energy = 5630.2742 kcal/mol (5624.3864 without restraints) Performing minimization step: 3512. Total energy = 5629.2944 kcal/mol (5623.4083 without restraints) Performing minimization step: 3513. Total energy = 5628.3152 kcal/mol (5622.4309 without restraints) Performing minimization step: 3514. Total energy = 5627.3375 kcal/mol (5621.4548 without restraints) Performing minimization step: 3515. Total energy = 5626.3602 kcal/mol (5620.4793 without restraints) Performing minimization step: 3516. Total energy = 5625.3841 kcal/mol (5619.5048 without restraints) Performing minimization step: 3517. Total energy = 5624.4087 kcal/mol (5618.5313 without restraints) Performing minimization step: 3518. Total energy = 5623.4342 kcal/mol (5617.5583 without restraints) Performing minimization step: 3519. Total energy = 5622.4608 kcal/mol (5616.5867 without restraints) Performing minimization step: 3520. Total energy = 5621.4882 kcal/mol (5615.6158 without restraints) Performing minimization step: 3521. Total energy = 5620.5167 kcal/mol (5614.6462 without restraints) Performing minimization step: 3522. Total energy = 5619.5458 kcal/mol (5613.6768 without restraints) Performing minimization step: 3523. Total energy = 5618.5758 kcal/mol (5612.7084 without restraints) Performing minimization step: 3524. Total energy = 5617.6064 kcal/mol (5611.7409 without restraints) Performing minimization step: 3525. Total energy = 5616.6385 kcal/mol (5610.7745 without restraints) Performing minimization step: 3526. Total energy = 5615.6709 kcal/mol (5609.8086 without restraints) Performing minimization step: 3527. Total energy = 5614.7043 kcal/mol (5608.8437 without restraints) Performing minimization step: 3528. Total energy = 5613.7382 kcal/mol (5607.8793 without restraints) Performing minimization step: 3529. Total energy = 5612.7733 kcal/mol (5606.9161 without restraints) Performing minimization step: 3530. Total energy = 5611.8092 kcal/mol (5605.9537 without restraints) Performing minimization step: 3531. Total energy = 5610.8462 kcal/mol (5604.9923 without restraints) Performing minimization step: 3532. Total energy = 5609.8837 kcal/mol (5604.0316 without restraints) Performing minimization step: 3533. Total energy = 5608.9223 kcal/mol (5603.0718 without restraints) Performing minimization step: 3534. Total energy = 5607.9617 kcal/mol (5602.1131 without restraints) Performing minimization step: 3535. Total energy = 5607.0022 kcal/mol (5601.1554 without restraints) Performing minimization step: 3536. Total energy = 5606.0434 kcal/mol (5600.1980 without restraints) Performing minimization step: 3537. Total energy = 5605.0857 kcal/mol (5599.2421 without restraints) Performing minimization step: 3538. Total energy = 5604.1284 kcal/mol (5598.2864 without restraints) Performing minimization step: 3539. Total energy = 5603.1715 kcal/mol (5597.3312 without restraints) Performing minimization step: 3540. Total energy = 5602.2160 kcal/mol (5596.3774 without restraints) Performing minimization step: 3541. Total energy = 5601.2616 kcal/mol (5595.4247 without restraints) Performing minimization step: 3542. Total energy = 5600.3080 kcal/mol (5594.4728 without restraints) Performing minimization step: 3543. Total energy = 5599.3547 kcal/mol (5593.5211 without restraints) Performing minimization step: 3544. Total energy = 5598.4024 kcal/mol (5592.5705 without restraints) Performing minimization step: 3545. Total energy = 5597.4512 kcal/mol (5591.6210 without restraints) Performing minimization step: 3546. Total energy = 5596.5010 kcal/mol (5590.6725 without restraints) Performing minimization step: 3547. Total energy = 5595.5513 kcal/mol (5589.7245 without restraints) Performing minimization step: 3548. Total energy = 5594.6026 kcal/mol (5588.7775 without restraints) Performing minimization step: 3549. Total energy = 5593.6545 kcal/mol (5587.8311 without restraints) Performing minimization step: 3550. Total energy = 5592.7073 kcal/mol (5586.8856 without restraints) Performing minimization step: 3551. Total energy = 5591.7610 kcal/mol (5585.9412 without restraints) Performing minimization step: 3552. Total energy = 5590.8156 kcal/mol (5584.9972 without restraints) Performing minimization step: 3553. Total energy = 5589.8709 kcal/mol (5584.0542 without restraints) Performing minimization step: 3554. Total energy = 5588.9270 kcal/mol (5583.1119 without restraints) Performing minimization step: 3555. Total energy = 5587.9841 kcal/mol (5582.1707 without restraints) Performing minimization step: 3556. Total energy = 5587.0415 kcal/mol (5581.2298 without restraints) Performing minimization step: 3557. Total energy = 5586.1005 kcal/mol (5580.2905 without restraints) Performing minimization step: 3558. Total energy = 5585.1600 kcal/mol (5579.3516 without restraints) Performing minimization step: 3559. Total energy = 5584.2201 kcal/mol (5578.4135 without restraints) Performing minimization step: 3560. Total energy = 5583.2809 kcal/mol (5577.4760 without restraints) Performing minimization step: 3561. Total energy = 5582.3428 kcal/mol (5576.5395 without restraints) Performing minimization step: 3562. Total energy = 5581.4056 kcal/mol (5575.6040 without restraints) Performing minimization step: 3563. Total energy = 5580.4692 kcal/mol (5574.6693 without restraints) Performing minimization step: 3564. Total energy = 5579.5337 kcal/mol (5573.7355 without restraints) Performing minimization step: 3565. Total energy = 5578.5992 kcal/mol (5572.8026 without restraints) Performing minimization step: 3566. Total energy = 5577.6653 kcal/mol (5571.8704 without restraints) Performing minimization step: 3567. Total energy = 5576.7320 kcal/mol (5570.9387 without restraints) Performing minimization step: 3568. Total energy = 5575.7997 kcal/mol (5570.0080 without restraints) Performing minimization step: 3569. Total energy = 5574.8680 kcal/mol (5569.0780 without restraints) Performing minimization step: 3570. Total energy = 5573.9369 kcal/mol (5568.1486 without restraints) Performing minimization step: 3571. Total energy = 5573.0067 kcal/mol (5567.2202 without restraints) Performing minimization step: 3572. Total energy = 5572.0779 kcal/mol (5566.2930 without restraints) Performing minimization step: 3573. Total energy = 5571.1495 kcal/mol (5565.3661 without restraints) Performing minimization step: 3574. Total energy = 5570.2217 kcal/mol (5564.4401 without restraints) Performing minimization step: 3575. Total energy = 5569.2949 kcal/mol (5563.5149 without restraints) Performing minimization step: 3576. Total energy = 5568.3687 kcal/mol (5562.5905 without restraints) Performing minimization step: 3577. Total energy = 5567.4436 kcal/mol (5561.6671 without restraints) Performing minimization step: 3578. Total energy = 5566.5191 kcal/mol (5560.7442 without restraints) Performing minimization step: 3579. Total energy = 5565.5956 kcal/mol (5559.8224 without restraints) Performing minimization step: 3580. Total energy = 5564.6729 kcal/mol (5558.9014 without restraints) Performing minimization step: 3581. Total energy = 5563.7510 kcal/mol (5557.9812 without restraints) Performing minimization step: 3582. Total energy = 5562.8297 kcal/mol (5557.0615 without restraints) Performing minimization step: 3583. Total energy = 5561.9091 kcal/mol (5556.1426 without restraints) Performing minimization step: 3584. Total energy = 5560.9895 kcal/mol (5555.2247 without restraints) Performing minimization step: 3585. Total energy = 5560.0706 kcal/mol (5554.3073 without restraints) Performing minimization step: 3586. Total energy = 5559.1523 kcal/mol (5553.3908 without restraints) Performing minimization step: 3587. Total energy = 5558.2350 kcal/mol (5552.4751 without restraints) Performing minimization step: 3588. Total energy = 5557.3184 kcal/mol (5551.5601 without restraints) Performing minimization step: 3589. Total energy = 5556.4026 kcal/mol (5550.6460 without restraints) Performing minimization step: 3590. Total energy = 5555.4876 kcal/mol (5549.7327 without restraints) Performing minimization step: 3591. Total energy = 5554.5732 kcal/mol (5548.8199 without restraints) Performing minimization step: 3592. Total energy = 5553.6599 kcal/mol (5547.9083 without restraints) Performing minimization step: 3593. Total energy = 5552.7475 kcal/mol (5546.9977 without restraints) Performing minimization step: 3594. Total energy = 5551.8355 kcal/mol (5546.0873 without restraints) Performing minimization step: 3595. Total energy = 5550.9246 kcal/mol (5545.1780 without restraints) Performing minimization step: 3596. Total energy = 5550.0140 kcal/mol (5544.2689 without restraints) Performing minimization step: 3597. Total energy = 5549.1045 kcal/mol (5543.3612 without restraints) Performing minimization step: 3598. Total energy = 5548.1958 kcal/mol (5542.4542 without restraints) Performing minimization step: 3599. Total energy = 5547.2878 kcal/mol (5541.5478 without restraints) Performing minimization step: 3600. Total energy = 5546.3808 kcal/mol (5540.6425 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 5545.4742 kcal/mol (5539.7374 without restraints) Performing minimization step: 3602. Total energy = 5544.5685 kcal/mol (5538.8335 without restraints) Performing minimization step: 3603. Total energy = 5543.6635 kcal/mol (5537.9302 without restraints) Performing minimization step: 3604. Total energy = 5542.7597 kcal/mol (5537.0281 without restraints) Performing minimization step: 3605. Total energy = 5541.8564 kcal/mol (5536.1263 without restraints) Performing minimization step: 3606. Total energy = 5540.9539 kcal/mol (5535.2257 without restraints) Performing minimization step: 3607. Total energy = 5540.0524 kcal/mol (5534.3259 without restraints) Performing minimization step: 3608. Total energy = 5539.1517 kcal/mol (5533.4265 without restraints) Performing minimization step: 3609. Total energy = 5538.2512 kcal/mol (5532.5277 without restraints) Performing minimization step: 3610. Total energy = 5537.3516 kcal/mol (5531.6297 without restraints) Performing minimization step: 3611. Total energy = 5536.4528 kcal/mol (5530.7326 without restraints) Performing minimization step: 3612. Total energy = 5535.5553 kcal/mol (5529.8368 without restraints) Performing minimization step: 3613. Total energy = 5534.6579 kcal/mol (5528.9410 without restraints) Performing minimization step: 3614. Total energy = 5533.7612 kcal/mol (5528.0459 without restraints) Performing minimization step: 3615. Total energy = 5532.8652 kcal/mol (5527.1516 without restraints) Performing minimization step: 3616. Total energy = 5531.9703 kcal/mol (5526.2583 without restraints) Performing minimization step: 3617. Total energy = 5531.0761 kcal/mol (5525.3658 without restraints) Performing minimization step: 3618. Total energy = 5530.1824 kcal/mol (5524.4738 without restraints) Performing minimization step: 3619. Total energy = 5529.2896 kcal/mol (5523.5826 without restraints) Performing minimization step: 3620. Total energy = 5528.3976 kcal/mol (5522.6922 without restraints) Performing minimization step: 3621. Total energy = 5527.5061 kcal/mol (5521.8022 without restraints) Performing minimization step: 3622. Total energy = 5526.6156 kcal/mol (5520.9135 without restraints) Performing minimization step: 3623. Total energy = 5525.7260 kcal/mol (5520.0256 without restraints) Performing minimization step: 3624. Total energy = 5524.8370 kcal/mol (5519.1382 without restraints) Performing minimization step: 3625. Total energy = 5523.9486 kcal/mol (5518.2515 without restraints) Performing minimization step: 3626. Total energy = 5523.0609 kcal/mol (5517.3654 without restraints) Performing minimization step: 3627. Total energy = 5522.1740 kcal/mol (5516.4800 without restraints) Performing minimization step: 3628. Total energy = 5521.2877 kcal/mol (5515.5954 without restraints) Performing minimization step: 3629. Total energy = 5520.4022 kcal/mol (5514.7116 without restraints) Performing minimization step: 3630. Total energy = 5519.5175 kcal/mol (5513.8285 without restraints) Performing minimization step: 3631. Total energy = 5518.6334 kcal/mol (5512.9461 without restraints) Performing minimization step: 3632. Total energy = 5517.7501 kcal/mol (5512.0644 without restraints) Performing minimization step: 3633. Total energy = 5516.8678 kcal/mol (5511.1838 without restraints) Performing minimization step: 3634. Total energy = 5515.9863 kcal/mol (5510.3040 without restraints) Performing minimization step: 3635. Total energy = 5515.1057 kcal/mol (5509.4250 without restraints) Performing minimization step: 3636. Total energy = 5514.2252 kcal/mol (5508.5459 without restraints) Performing minimization step: 3637. Total energy = 5513.3459 kcal/mol (5507.6685 without restraints) Performing minimization step: 3638. Total energy = 5512.4673 kcal/mol (5506.7914 without restraints) Performing minimization step: 3639. Total energy = 5511.5891 kcal/mol (5505.9149 without restraints) Performing minimization step: 3640. Total energy = 5510.7122 kcal/mol (5505.0396 without restraints) Performing minimization step: 3641. Total energy = 5509.8359 kcal/mol (5504.1649 without restraints) Performing minimization step: 3642. Total energy = 5508.9599 kcal/mol (5503.2905 without restraints) Performing minimization step: 3643. Total energy = 5508.0845 kcal/mol (5502.4168 without restraints) Performing minimization step: 3644. Total energy = 5507.2100 kcal/mol (5501.5440 without restraints) Performing minimization step: 3645. Total energy = 5506.3362 kcal/mol (5500.6717 without restraints) Performing minimization step: 3646. Total energy = 5505.4629 kcal/mol (5499.8002 without restraints) Performing minimization step: 3647. Total energy = 5504.5908 kcal/mol (5498.9296 without restraints) Performing minimization step: 3648. Total energy = 5503.7192 kcal/mol (5498.0596 without restraints) Performing minimization step: 3649. Total energy = 5502.8482 kcal/mol (5497.1905 without restraints) Performing minimization step: 3650. Total energy = 5501.9781 kcal/mol (5496.3217 without restraints) Performing minimization step: 3651. Total energy = 5501.1086 kcal/mol (5495.4540 without restraints) Performing minimization step: 3652. Total energy = 5500.2401 kcal/mol (5494.5874 without restraints) Performing minimization step: 3653. Total energy = 5499.3723 kcal/mol (5493.7208 without restraints) Performing minimization step: 3654. Total energy = 5498.5051 kcal/mol (5492.8552 without restraints) Performing minimization step: 3655. Total energy = 5497.6384 kcal/mol (5491.9903 without restraints) Performing minimization step: 3656. Total energy = 5496.7727 kcal/mol (5491.1261 without restraints) Performing minimization step: 3657. Total energy = 5495.9073 kcal/mol (5490.2623 without restraints) Performing minimization step: 3658. Total energy = 5495.0436 kcal/mol (5489.4002 without restraints) Performing minimization step: 3659. Total energy = 5494.1797 kcal/mol (5488.5379 without restraints) Performing minimization step: 3660. Total energy = 5493.3164 kcal/mol (5487.6763 without restraints) Performing minimization step: 3661. Total energy = 5492.4540 kcal/mol (5486.8155 without restraints) Performing minimization step: 3662. Total energy = 5491.5924 kcal/mol (5485.9555 without restraints) Performing minimization step: 3663. Total energy = 5490.7311 kcal/mol (5485.0957 without restraints) Performing minimization step: 3664. Total energy = 5489.8709 kcal/mol (5484.2373 without restraints) Performing minimization step: 3665. Total energy = 5489.0116 kcal/mol (5483.3795 without restraints) Performing minimization step: 3666. Total energy = 5488.1526 kcal/mol (5482.5222 without restraints) Performing minimization step: 3667. Total energy = 5487.2945 kcal/mol (5481.6657 without restraints) Performing minimization step: 3668. Total energy = 5486.4368 kcal/mol (5480.8096 without restraints) Performing minimization step: 3669. Total energy = 5485.5800 kcal/mol (5479.9544 without restraints) Performing minimization step: 3670. Total energy = 5484.7235 kcal/mol (5479.0995 without restraints) Performing minimization step: 3671. Total energy = 5483.8681 kcal/mol (5478.2457 without restraints) Performing minimization step: 3672. Total energy = 5483.0136 kcal/mol (5477.3928 without restraints) Performing minimization step: 3673. Total energy = 5482.1597 kcal/mol (5476.5405 without restraints) Performing minimization step: 3674. Total energy = 5481.3062 kcal/mol (5475.6887 without restraints) Performing minimization step: 3675. Total energy = 5480.4537 kcal/mol (5474.8379 without restraints) Performing minimization step: 3676. Total energy = 5479.6020 kcal/mol (5473.9876 without restraints) Performing minimization step: 3677. Total energy = 5478.7503 kcal/mol (5473.1376 without restraints) Performing minimization step: 3678. Total energy = 5477.8995 kcal/mol (5472.2884 without restraints) Performing minimization step: 3679. Total energy = 5477.0493 kcal/mol (5471.4398 without restraints) Performing minimization step: 3680. Total energy = 5476.2001 kcal/mol (5470.5922 without restraints) Performing minimization step: 3681. Total energy = 5475.3517 kcal/mol (5469.7453 without restraints) Performing minimization step: 3682. Total energy = 5474.5034 kcal/mol (5468.8987 without restraints) Performing minimization step: 3683. Total energy = 5473.6559 kcal/mol (5468.0527 without restraints) Performing minimization step: 3684. Total energy = 5472.8093 kcal/mol (5467.2078 without restraints) Performing minimization step: 3685. Total energy = 5471.9633 kcal/mol (5466.3634 without restraints) Performing minimization step: 3686. Total energy = 5471.1181 kcal/mol (5465.5198 without restraints) Performing minimization step: 3687. Total energy = 5470.2740 kcal/mol (5464.6775 without restraints) Performing minimization step: 3688. Total energy = 5469.4300 kcal/mol (5463.8349 without restraints) Performing minimization step: 3689. Total energy = 5468.5867 kcal/mol (5462.9933 without restraints) Performing minimization step: 3690. Total energy = 5467.7440 kcal/mol (5462.1521 without restraints) Performing minimization step: 3691. Total energy = 5466.9019 kcal/mol (5461.3117 without restraints) Performing minimization step: 3692. Total energy = 5466.0607 kcal/mol (5460.4722 without restraints) Performing minimization step: 3693. Total energy = 5465.2204 kcal/mol (5459.6334 without restraints) Performing minimization step: 3694. Total energy = 5464.3805 kcal/mol (5458.7950 without restraints) Performing minimization step: 3695. Total energy = 5463.5415 kcal/mol (5457.9577 without restraints) Performing minimization step: 3696. Total energy = 5462.7033 kcal/mol (5457.1211 without restraints) Performing minimization step: 3697. Total energy = 5461.8655 kcal/mol (5456.2848 without restraints) Performing minimization step: 3698. Total energy = 5461.0282 kcal/mol (5455.4491 without restraints) Performing minimization step: 3699. Total energy = 5460.1911 kcal/mol (5454.6136 without restraints) Performing minimization step: 3700. Total energy = 5459.3552 kcal/mol (5453.7792 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 5458.5204 kcal/mol (5452.9461 without restraints) Performing minimization step: 3702. Total energy = 5457.6857 kcal/mol (5452.1131 without restraints) Performing minimization step: 3703. Total energy = 5456.8517 kcal/mol (5451.2806 without restraints) Performing minimization step: 3704. Total energy = 5456.0187 kcal/mol (5450.4493 without restraints) Performing minimization step: 3705. Total energy = 5455.1861 kcal/mol (5449.6182 without restraints) Performing minimization step: 3706. Total energy = 5454.3545 kcal/mol (5448.7882 without restraints) Performing minimization step: 3707. Total energy = 5453.5233 kcal/mol (5447.9586 without restraints) Performing minimization step: 3708. Total energy = 5452.6926 kcal/mol (5447.1295 without restraints) Performing minimization step: 3709. Total energy = 5451.8626 kcal/mol (5446.3010 without restraints) Performing minimization step: 3710. Total energy = 5451.0336 kcal/mol (5445.4736 without restraints) Performing minimization step: 3711. Total energy = 5450.2049 kcal/mol (5444.6465 without restraints) Performing minimization step: 3712. Total energy = 5449.3767 kcal/mol (5443.8199 without restraints) Performing minimization step: 3713. Total energy = 5448.5494 kcal/mol (5442.9942 without restraints) Performing minimization step: 3714. Total energy = 5447.7226 kcal/mol (5442.1690 without restraints) Performing minimization step: 3715. Total energy = 5446.8965 kcal/mol (5441.3445 without restraints) Performing minimization step: 3716. Total energy = 5446.0714 kcal/mol (5440.5212 without restraints) Performing minimization step: 3717. Total energy = 5445.2469 kcal/mol (5439.6981 without restraints) Performing minimization step: 3718. Total energy = 5444.4225 kcal/mol (5438.8753 without restraints) Performing minimization step: 3719. Total energy = 5443.5990 kcal/mol (5438.0533 without restraints) Performing minimization step: 3720. Total energy = 5442.7761 kcal/mol (5437.2320 without restraints) Performing minimization step: 3721. Total energy = 5441.9538 kcal/mol (5436.4113 without restraints) Performing minimization step: 3722. Total energy = 5441.1325 kcal/mol (5435.5917 without restraints) Performing minimization step: 3723. Total energy = 5440.3116 kcal/mol (5434.7723 without restraints) Performing minimization step: 3724. Total energy = 5439.4912 kcal/mol (5433.9534 without restraints) Performing minimization step: 3725. Total energy = 5438.6715 kcal/mol (5433.1353 without restraints) Performing minimization step: 3726. Total energy = 5437.8527 kcal/mol (5432.3181 without restraints) Performing minimization step: 3727. Total energy = 5437.0346 kcal/mol (5431.5016 without restraints) Performing minimization step: 3728. Total energy = 5436.2172 kcal/mol (5430.6858 without restraints) Performing minimization step: 3729. Total energy = 5435.4003 kcal/mol (5429.8706 without restraints) Performing minimization step: 3730. Total energy = 5434.5841 kcal/mol (5429.0559 without restraints) Performing minimization step: 3731. Total energy = 5433.7683 kcal/mol (5428.2416 without restraints) Performing minimization step: 3732. Total energy = 5432.9531 kcal/mol (5427.4279 without restraints) Performing minimization step: 3733. Total energy = 5432.1384 kcal/mol (5426.6148 without restraints) Performing minimization step: 3734. Total energy = 5431.3248 kcal/mol (5425.8029 without restraints) Performing minimization step: 3735. Total energy = 5430.5118 kcal/mol (5424.9914 without restraints) Performing minimization step: 3736. Total energy = 5429.6991 kcal/mol (5424.1803 without restraints) Performing minimization step: 3737. Total energy = 5428.8873 kcal/mol (5423.3700 without restraints) Performing minimization step: 3738. Total energy = 5428.0760 kcal/mol (5422.5602 without restraints) Performing minimization step: 3739. Total energy = 5427.2651 kcal/mol (5421.7509 without restraints) Performing minimization step: 3740. Total energy = 5426.4549 kcal/mol (5420.9423 without restraints) Performing minimization step: 3741. Total energy = 5425.6456 kcal/mol (5420.1345 without restraints) Performing minimization step: 3742. Total energy = 5424.8367 kcal/mol (5419.3272 without restraints) Performing minimization step: 3743. Total energy = 5424.0284 kcal/mol (5418.5206 without restraints) Performing minimization step: 3744. Total energy = 5423.2214 kcal/mol (5417.7152 without restraints) Performing minimization step: 3745. Total energy = 5422.4146 kcal/mol (5416.9099 without restraints) Performing minimization step: 3746. Total energy = 5421.6087 kcal/mol (5416.1055 without restraints) Performing minimization step: 3747. Total energy = 5420.8029 kcal/mol (5415.3013 without restraints) Performing minimization step: 3748. Total energy = 5419.9980 kcal/mol (5414.4979 without restraints) Performing minimization step: 3749. Total energy = 5419.1937 kcal/mol (5413.6952 without restraints) Performing minimization step: 3750. Total energy = 5418.3899 kcal/mol (5412.8931 without restraints) Performing minimization step: 3751. Total energy = 5417.5864 kcal/mol (5412.0909 without restraints) Performing minimization step: 3752. Total energy = 5416.7837 kcal/mol (5411.2898 without restraints) Performing minimization step: 3753. Total energy = 5415.9815 kcal/mol (5410.4893 without restraints) Performing minimization step: 3754. Total energy = 5415.1801 kcal/mol (5409.6894 without restraints) Performing minimization step: 3755. Total energy = 5414.3795 kcal/mol (5408.8903 without restraints) Performing minimization step: 3756. Total energy = 5413.5792 kcal/mol (5408.0916 without restraints) Performing minimization step: 3757. Total energy = 5412.7798 kcal/mol (5407.2938 without restraints) Performing minimization step: 3758. Total energy = 5411.9810 kcal/mol (5406.4965 without restraints) Performing minimization step: 3759. Total energy = 5411.1828 kcal/mol (5405.6999 without restraints) Performing minimization step: 3760. Total energy = 5410.3849 kcal/mol (5404.9036 without restraints) Performing minimization step: 3761. Total energy = 5409.5879 kcal/mol (5404.1081 without restraints) Performing minimization step: 3762. Total energy = 5408.7916 kcal/mol (5403.3134 without restraints) Performing minimization step: 3763. Total energy = 5407.9957 kcal/mol (5402.5190 without restraints) Performing minimization step: 3764. Total energy = 5407.2004 kcal/mol (5401.7253 without restraints) Performing minimization step: 3765. Total energy = 5406.4059 kcal/mol (5400.9323 without restraints) Performing minimization step: 3766. Total energy = 5405.6122 kcal/mol (5400.1402 without restraints) Performing minimization step: 3767. Total energy = 5404.8192 kcal/mol (5399.3488 without restraints) Performing minimization step: 3768. Total energy = 5404.0264 kcal/mol (5398.5575 without restraints) Performing minimization step: 3769. Total energy = 5403.2344 kcal/mol (5397.7670 without restraints) Performing minimization step: 3770. Total energy = 5402.4428 kcal/mol (5396.9771 without restraints) Performing minimization step: 3771. Total energy = 5401.6519 kcal/mol (5396.1876 without restraints) Performing minimization step: 3772. Total energy = 5400.8614 kcal/mol (5395.3987 without restraints) Performing minimization step: 3773. Total energy = 5400.0718 kcal/mol (5394.6106 without restraints) Performing minimization step: 3774. Total energy = 5399.2829 kcal/mol (5393.8233 without restraints) Performing minimization step: 3775. Total energy = 5398.4939 kcal/mol (5393.0357 without restraints) Performing minimization step: 3776. Total energy = 5397.7060 kcal/mol (5392.2495 without restraints) Performing minimization step: 3777. Total energy = 5396.9192 kcal/mol (5391.4642 without restraints) Performing minimization step: 3778. Total energy = 5396.1327 kcal/mol (5390.6793 without restraints) Performing minimization step: 3779. Total energy = 5395.3471 kcal/mol (5389.8954 without restraints) Performing minimization step: 3780. Total energy = 5394.5616 kcal/mol (5389.1113 without restraints) Performing minimization step: 3781. Total energy = 5393.7766 kcal/mol (5388.3279 without restraints) Performing minimization step: 3782. Total energy = 5392.9923 kcal/mol (5387.5452 without restraints) Performing minimization step: 3783. Total energy = 5392.2088 kcal/mol (5386.7631 without restraints) Performing minimization step: 3784. Total energy = 5391.4257 kcal/mol (5385.9815 without restraints) Performing minimization step: 3785. Total energy = 5390.6430 kcal/mol (5385.2004 without restraints) Performing minimization step: 3786. Total energy = 5389.8613 kcal/mol (5384.4202 without restraints) Performing minimization step: 3787. Total energy = 5389.0798 kcal/mol (5383.6402 without restraints) Performing minimization step: 3788. Total energy = 5388.2991 kcal/mol (5382.8611 without restraints) Performing minimization step: 3789. Total energy = 5387.5191 kcal/mol (5382.0827 without restraints) Performing minimization step: 3790. Total energy = 5386.7397 kcal/mol (5381.3048 without restraints) Performing minimization step: 3791. Total energy = 5385.9607 kcal/mol (5380.5272 without restraints) Performing minimization step: 3792. Total energy = 5385.1824 kcal/mol (5379.7505 without restraints) Performing minimization step: 3793. Total energy = 5384.4046 kcal/mol (5378.9743 without restraints) Performing minimization step: 3794. Total energy = 5383.6277 kcal/mol (5378.1989 without restraints) Performing minimization step: 3795. Total energy = 5382.8508 kcal/mol (5377.4236 without restraints) Performing minimization step: 3796. Total energy = 5382.0750 kcal/mol (5376.6493 without restraints) Performing minimization step: 3797. Total energy = 5381.2994 kcal/mol (5375.8752 without restraints) Performing minimization step: 3798. Total energy = 5380.5243 kcal/mol (5375.1017 without restraints) Performing minimization step: 3799. Total energy = 5379.7499 kcal/mol (5374.3287 without restraints) Performing minimization step: 3800. Total energy = 5378.9760 kcal/mol (5373.5564 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 5378.2025 kcal/mol (5372.7845 without restraints) Performing minimization step: 3802. Total energy = 5377.4299 kcal/mol (5372.0134 without restraints) Performing minimization step: 3803. Total energy = 5376.6580 kcal/mol (5371.2430 without restraints) Performing minimization step: 3804. Total energy = 5375.8865 kcal/mol (5370.4731 without restraints) Performing minimization step: 3805. Total energy = 5375.1158 kcal/mol (5369.7039 without restraints) Performing minimization step: 3806. Total energy = 5374.3454 kcal/mol (5368.9350 without restraints) Performing minimization step: 3807. Total energy = 5373.5756 kcal/mol (5368.1667 without restraints) Performing minimization step: 3808. Total energy = 5372.8058 kcal/mol (5367.3984 without restraints) Performing minimization step: 3809. Total energy = 5372.0372 kcal/mol (5366.6314 without restraints) Performing minimization step: 3810. Total energy = 5371.2691 kcal/mol (5365.8648 without restraints) Performing minimization step: 3811. Total energy = 5370.5020 kcal/mol (5365.0993 without restraints) Performing minimization step: 3812. Total energy = 5369.7351 kcal/mol (5364.3338 without restraints) Performing minimization step: 3813. Total energy = 5368.9687 kcal/mol (5363.5690 without restraints) Performing minimization step: 3814. Total energy = 5368.2030 kcal/mol (5362.8047 without restraints) Performing minimization step: 3815. Total energy = 5367.4377 kcal/mol (5362.0410 without restraints) Performing minimization step: 3816. Total energy = 5366.6730 kcal/mol (5361.2779 without restraints) Performing minimization step: 3817. Total energy = 5365.9094 kcal/mol (5360.5157 without restraints) Performing minimization step: 3818. Total energy = 5365.1463 kcal/mol (5359.7541 without restraints) Performing minimization step: 3819. Total energy = 5364.3831 kcal/mol (5358.9925 without restraints) Performing minimization step: 3820. Total energy = 5363.6209 kcal/mol (5358.2317 without restraints) Performing minimization step: 3821. Total energy = 5362.8592 kcal/mol (5357.4716 without restraints) Performing minimization step: 3822. Total energy = 5362.0979 kcal/mol (5356.7119 without restraints) Performing minimization step: 3823. Total energy = 5361.3377 kcal/mol (5355.9533 without restraints) Performing minimization step: 3824. Total energy = 5360.5781 kcal/mol (5355.1951 without restraints) Performing minimization step: 3825. Total energy = 5359.8196 kcal/mol (5354.4384 without restraints) Performing minimization step: 3826. Total energy = 5359.0612 kcal/mol (5353.6814 without restraints) Performing minimization step: 3827. Total energy = 5358.3027 kcal/mol (5352.9244 without restraints) Performing minimization step: 3828. Total energy = 5357.5452 kcal/mol (5352.1682 without restraints) Performing minimization step: 3829. Total energy = 5356.7882 kcal/mol (5351.4131 without restraints) Performing minimization step: 3830. Total energy = 5356.0323 kcal/mol (5350.6584 without restraints) Performing minimization step: 3831. Total energy = 5355.2763 kcal/mol (5349.9039 without restraints) Performing minimization step: 3832. Total energy = 5354.5207 kcal/mol (5349.1498 without restraints) Performing minimization step: 3833. Total energy = 5353.7661 kcal/mol (5348.3966 without restraints) Performing minimization step: 3834. Total energy = 5353.0116 kcal/mol (5347.6437 without restraints) Performing minimization step: 3835. Total energy = 5352.2579 kcal/mol (5346.8916 without restraints) Performing minimization step: 3836. Total energy = 5351.5047 kcal/mol (5346.1398 without restraints) Performing minimization step: 3837. Total energy = 5350.7516 kcal/mol (5345.3883 without restraints) Performing minimization step: 3838. Total energy = 5349.9992 kcal/mol (5344.6373 without restraints) Performing minimization step: 3839. Total energy = 5349.2480 kcal/mol (5343.8876 without restraints) Performing minimization step: 3840. Total energy = 5348.4973 kcal/mol (5343.1386 without restraints) Performing minimization step: 3841. Total energy = 5347.7475 kcal/mol (5342.3902 without restraints) Performing minimization step: 3842. Total energy = 5346.9978 kcal/mol (5341.6423 without restraints) Performing minimization step: 3843. Total energy = 5346.2487 kcal/mol (5340.8943 without restraints) Performing minimization step: 3844. Total energy = 5345.4999 kcal/mol (5340.1471 without restraints) Performing minimization step: 3845. Total energy = 5344.7517 kcal/mol (5339.4006 without restraints) Performing minimization step: 3846. Total energy = 5344.0043 kcal/mol (5338.6545 without restraints) Performing minimization step: 3847. Total energy = 5343.2571 kcal/mol (5337.9088 without restraints) Performing minimization step: 3848. Total energy = 5342.5106 kcal/mol (5337.1638 without restraints) Performing minimization step: 3849. Total energy = 5341.7649 kcal/mol (5336.4198 without restraints) Performing minimization step: 3850. Total energy = 5341.0197 kcal/mol (5335.6759 without restraints) Performing minimization step: 3851. Total energy = 5340.2746 kcal/mol (5334.9323 without restraints) Performing minimization step: 3852. Total energy = 5339.5304 kcal/mol (5334.1896 without restraints) Performing minimization step: 3853. Total energy = 5338.7865 kcal/mol (5333.4472 without restraints) Performing minimization step: 3854. Total energy = 5338.0433 kcal/mol (5332.7055 without restraints) Performing minimization step: 3855. Total energy = 5337.3006 kcal/mol (5331.9643 without restraints) Performing minimization step: 3856. Total energy = 5336.5583 kcal/mol (5331.2235 without restraints) Performing minimization step: 3857. Total energy = 5335.8170 kcal/mol (5330.4837 without restraints) Performing minimization step: 3858. Total energy = 5335.0760 kcal/mol (5329.7441 without restraints) Performing minimization step: 3859. Total energy = 5334.3352 kcal/mol (5329.0048 without restraints) Performing minimization step: 3860. Total energy = 5333.5948 kcal/mol (5328.2660 without restraints) Performing minimization step: 3861. Total energy = 5332.8551 kcal/mol (5327.5278 without restraints) Performing minimization step: 3862. Total energy = 5332.1160 kcal/mol (5326.7901 without restraints) Performing minimization step: 3863. Total energy = 5331.3775 kcal/mol (5326.0531 without restraints) Performing minimization step: 3864. Total energy = 5330.6397 kcal/mol (5325.3168 without restraints) Performing minimization step: 3865. Total energy = 5329.9026 kcal/mol (5324.5813 without restraints) Performing minimization step: 3866. Total energy = 5329.1660 kcal/mol (5323.8462 without restraints) Performing minimization step: 3867. Total energy = 5328.4300 kcal/mol (5323.1117 without restraints) Performing minimization step: 3868. Total energy = 5327.6948 kcal/mol (5322.3779 without restraints) Performing minimization step: 3869. Total energy = 5326.9600 kcal/mol (5321.6445 without restraints) Performing minimization step: 3870. Total energy = 5326.2252 kcal/mol (5320.9113 without restraints) Performing minimization step: 3871. Total energy = 5325.4911 kcal/mol (5320.1786 without restraints) Performing minimization step: 3872. Total energy = 5324.7577 kcal/mol (5319.4467 without restraints) Performing minimization step: 3873. Total energy = 5324.0242 kcal/mol (5318.7147 without restraints) Performing minimization step: 3874. Total energy = 5323.2914 kcal/mol (5317.9834 without restraints) Performing minimization step: 3875. Total energy = 5322.5590 kcal/mol (5317.2525 without restraints) Performing minimization step: 3876. Total energy = 5321.8277 kcal/mol (5316.5226 without restraints) Performing minimization step: 3877. Total energy = 5321.0969 kcal/mol (5315.7933 without restraints) Performing minimization step: 3878. Total energy = 5320.3665 kcal/mol (5315.0645 without restraints) Performing minimization step: 3879. Total energy = 5319.6367 kcal/mol (5314.3364 without restraints) Performing minimization step: 3880. Total energy = 5318.9077 kcal/mol (5313.6086 without restraints) Performing minimization step: 3881. Total energy = 5318.1790 kcal/mol (5312.8815 without restraints) Performing minimization step: 3882. Total energy = 5317.4509 kcal/mol (5312.1548 without restraints) Performing minimization step: 3883. Total energy = 5316.7229 kcal/mol (5311.4282 without restraints) Performing minimization step: 3884. Total energy = 5315.9953 kcal/mol (5310.7022 without restraints) Performing minimization step: 3885. Total energy = 5315.2685 kcal/mol (5309.9768 without restraints) Performing minimization step: 3886. Total energy = 5314.5421 kcal/mol (5309.2518 without restraints) Performing minimization step: 3887. Total energy = 5313.8166 kcal/mol (5308.5280 without restraints) Performing minimization step: 3888. Total energy = 5313.0915 kcal/mol (5307.8042 without restraints) Performing minimization step: 3889. Total energy = 5312.3670 kcal/mol (5307.0812 without restraints) Performing minimization step: 3890. Total energy = 5311.6428 kcal/mol (5306.3585 without restraints) Performing minimization step: 3891. Total energy = 5310.9193 kcal/mol (5305.6365 without restraints) Performing minimization step: 3892. Total energy = 5310.1964 kcal/mol (5304.9150 without restraints) Performing minimization step: 3893. Total energy = 5309.4740 kcal/mol (5304.1941 without restraints) Performing minimization step: 3894. Total energy = 5308.7521 kcal/mol (5303.4737 without restraints) Performing minimization step: 3895. Total energy = 5308.0304 kcal/mol (5302.7536 without restraints) Performing minimization step: 3896. Total energy = 5307.3098 kcal/mol (5302.0344 without restraints) Performing minimization step: 3897. Total energy = 5306.5893 kcal/mol (5301.3153 without restraints) Performing minimization step: 3898. Total energy = 5305.8693 kcal/mol (5300.5968 without restraints) Performing minimization step: 3899. Total energy = 5305.1499 kcal/mol (5299.8789 without restraints) Performing minimization step: 3900. Total energy = 5304.4308 kcal/mol (5299.1613 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 5303.7125 kcal/mol (5298.4444 without restraints) Performing minimization step: 3902. Total energy = 5302.9949 kcal/mol (5297.7283 without restraints) Performing minimization step: 3903. Total energy = 5302.2777 kcal/mol (5297.0125 without restraints) Performing minimization step: 3904. Total energy = 5301.5608 kcal/mol (5296.2971 without restraints) Performing minimization step: 3905. Total energy = 5300.8445 kcal/mol (5295.5824 without restraints) Performing minimization step: 3906. Total energy = 5300.1287 kcal/mol (5294.8679 without restraints) Performing minimization step: 3907. Total energy = 5299.4139 kcal/mol (5294.1546 without restraints) Performing minimization step: 3908. Total energy = 5298.6991 kcal/mol (5293.4413 without restraints) Performing minimization step: 3909. Total energy = 5297.9852 kcal/mol (5292.7288 without restraints) Performing minimization step: 3910. Total energy = 5297.2716 kcal/mol (5292.0168 without restraints) Performing minimization step: 3911. Total energy = 5296.5584 kcal/mol (5291.3049 without restraints) Performing minimization step: 3912. Total energy = 5295.8453 kcal/mol (5290.5933 without restraints) Performing minimization step: 3913. Total energy = 5295.1333 kcal/mol (5289.8829 without restraints) Performing minimization step: 3914. Total energy = 5294.4216 kcal/mol (5289.1725 without restraints) Performing minimization step: 3915. Total energy = 5293.7103 kcal/mol (5288.4628 without restraints) Performing minimization step: 3916. Total energy = 5293.0007 kcal/mol (5287.7548 without restraints) Performing minimization step: 3917. Total energy = 5292.2907 kcal/mol (5287.0461 without restraints) Performing minimization step: 3918. Total energy = 5291.5807 kcal/mol (5286.3374 without restraints) Performing minimization step: 3919. Total energy = 5290.8715 kcal/mol (5285.6297 without restraints) Performing minimization step: 3920. Total energy = 5290.1631 kcal/mol (5284.9228 without restraints) Performing minimization step: 3921. Total energy = 5289.4549 kcal/mol (5284.2160 without restraints) Performing minimization step: 3922. Total energy = 5288.7471 kcal/mol (5283.5097 without restraints) Performing minimization step: 3923. Total energy = 5288.0402 kcal/mol (5282.8042 without restraints) Performing minimization step: 3924. Total energy = 5287.3334 kcal/mol (5282.0990 without restraints) Performing minimization step: 3925. Total energy = 5286.6275 kcal/mol (5281.3944 without restraints) Performing minimization step: 3926. Total energy = 5285.9218 kcal/mol (5280.6902 without restraints) Performing minimization step: 3927. Total energy = 5285.2170 kcal/mol (5279.9869 without restraints) Performing minimization step: 3928. Total energy = 5284.5124 kcal/mol (5279.2837 without restraints) Performing minimization step: 3929. Total energy = 5283.8086 kcal/mol (5278.5814 without restraints) Performing minimization step: 3930. Total energy = 5283.1051 kcal/mol (5277.8794 without restraints) Performing minimization step: 3931. Total energy = 5282.4021 kcal/mol (5277.1778 without restraints) Performing minimization step: 3932. Total energy = 5281.6994 kcal/mol (5276.4766 without restraints) Performing minimization step: 3933. Total energy = 5280.9973 kcal/mol (5275.7760 without restraints) Performing minimization step: 3934. Total energy = 5280.2960 kcal/mol (5275.0760 without restraints) Performing minimization step: 3935. Total energy = 5279.5946 kcal/mol (5274.3761 without restraints) Performing minimization step: 3936. Total energy = 5278.8940 kcal/mol (5273.6769 without restraints) Performing minimization step: 3937. Total energy = 5278.1937 kcal/mol (5272.9781 without restraints) Performing minimization step: 3938. Total energy = 5277.4940 kcal/mol (5272.2798 without restraints) Performing minimization step: 3939. Total energy = 5276.7949 kcal/mol (5271.5821 without restraints) Performing minimization step: 3940. Total energy = 5276.0960 kcal/mol (5270.8847 without restraints) Performing minimization step: 3941. Total energy = 5275.3978 kcal/mol (5270.1879 without restraints) Performing minimization step: 3942. Total energy = 5274.7005 kcal/mol (5269.4921 without restraints) Performing minimization step: 3943. Total energy = 5274.0030 kcal/mol (5268.7960 without restraints) Performing minimization step: 3944. Total energy = 5273.3064 kcal/mol (5268.1009 without restraints) Performing minimization step: 3945. Total energy = 5272.6101 kcal/mol (5267.4061 without restraints) Performing minimization step: 3946. Total energy = 5271.9142 kcal/mol (5266.7116 without restraints) Performing minimization step: 3947. Total energy = 5271.2192 kcal/mol (5266.0180 without restraints) Performing minimization step: 3948. Total energy = 5270.5250 kcal/mol (5265.3254 without restraints) Performing minimization step: 3949. Total energy = 5269.8308 kcal/mol (5264.6325 without restraints) Performing minimization step: 3950. Total energy = 5269.1373 kcal/mol (5263.9404 without restraints) Performing minimization step: 3951. Total energy = 5268.4444 kcal/mol (5263.2489 without restraints) Performing minimization step: 3952. Total energy = 5267.7515 kcal/mol (5262.5576 without restraints) Performing minimization step: 3953. Total energy = 5267.0594 kcal/mol (5261.8669 without restraints) Performing minimization step: 3954. Total energy = 5266.3679 kcal/mol (5261.1768 without restraints) Performing minimization step: 3955. Total energy = 5265.6769 kcal/mol (5260.4873 without restraints) Performing minimization step: 3956. Total energy = 5264.9861 kcal/mol (5259.7977 without restraints) Performing minimization step: 3957. Total energy = 5264.2964 kcal/mol (5259.1096 without restraints) Performing minimization step: 3958. Total energy = 5263.6066 kcal/mol (5258.4212 without restraints) Performing minimization step: 3959. Total energy = 5262.9173 kcal/mol (5257.7333 without restraints) Performing minimization step: 3960. Total energy = 5262.2285 kcal/mol (5257.0460 without restraints) Performing minimization step: 3961. Total energy = 5261.5405 kcal/mol (5256.3596 without restraints) Performing minimization step: 3962. Total energy = 5260.8527 kcal/mol (5255.6730 without restraints) Performing minimization step: 3963. Total energy = 5260.1652 kcal/mol (5254.9871 without restraints) Performing minimization step: 3964. Total energy = 5259.4783 kcal/mol (5254.3016 without restraints) Performing minimization step: 3965. Total energy = 5258.7918 kcal/mol (5253.6165 without restraints) Performing minimization step: 3966. Total energy = 5258.1062 kcal/mol (5252.9324 without restraints) Performing minimization step: 3967. Total energy = 5257.4212 kcal/mol (5252.2487 without restraints) Performing minimization step: 3968. Total energy = 5256.7366 kcal/mol (5251.5658 without restraints) Performing minimization step: 3969. Total energy = 5256.0523 kcal/mol (5250.8827 without restraints) Performing minimization step: 3970. Total energy = 5255.3679 kcal/mol (5250.1997 without restraints) Performing minimization step: 3971. Total energy = 5254.6849 kcal/mol (5249.5181 without restraints) Performing minimization step: 3972. Total energy = 5254.0015 kcal/mol (5248.8362 without restraints) Performing minimization step: 3973. Total energy = 5253.3189 kcal/mol (5248.1550 without restraints) Performing minimization step: 3974. Total energy = 5252.6366 kcal/mol (5247.4742 without restraints) Performing minimization step: 3975. Total energy = 5251.9555 kcal/mol (5246.7944 without restraints) Performing minimization step: 3976. Total energy = 5251.2742 kcal/mol (5246.1145 without restraints) Performing minimization step: 3977. Total energy = 5250.5934 kcal/mol (5245.4352 without restraints) Performing minimization step: 3978. Total energy = 5249.9132 kcal/mol (5244.7564 without restraints) Performing minimization step: 3979. Total energy = 5249.2334 kcal/mol (5244.0780 without restraints) Performing minimization step: 3980. Total energy = 5248.5541 kcal/mol (5243.4002 without restraints) Performing minimization step: 3981. Total energy = 5247.8752 kcal/mol (5242.7226 without restraints) Performing minimization step: 3982. Total energy = 5247.1967 kcal/mol (5242.0456 without restraints) Performing minimization step: 3983. Total energy = 5246.5188 kcal/mol (5241.3693 without restraints) Performing minimization step: 3984. Total energy = 5245.8420 kcal/mol (5240.6937 without restraints) Performing minimization step: 3985. Total energy = 5245.1651 kcal/mol (5240.0182 without restraints) Performing minimization step: 3986. Total energy = 5244.4893 kcal/mol (5239.3444 without restraints) Performing minimization step: 3987. Total energy = 5243.8138 kcal/mol (5238.6698 without restraints) Performing minimization step: 3988. Total energy = 5243.1383 kcal/mol (5237.9957 without restraints) Performing minimization step: 3989. Total energy = 5242.4630 kcal/mol (5237.3218 without restraints) Performing minimization step: 3990. Total energy = 5241.7887 kcal/mol (5236.6491 without restraints) Performing minimization step: 3991. Total energy = 5241.1145 kcal/mol (5235.9760 without restraints) Performing minimization step: 3992. Total energy = 5240.4407 kcal/mol (5235.3038 without restraints) Performing minimization step: 3993. Total energy = 5239.7675 kcal/mol (5234.6320 without restraints) Performing minimization step: 3994. Total energy = 5239.0948 kcal/mol (5233.9607 without restraints) Performing minimization step: 3995. Total energy = 5238.4232 kcal/mol (5233.2905 without restraints) Performing minimization step: 3996. Total energy = 5237.7520 kcal/mol (5232.6208 without restraints) Performing minimization step: 3997. Total energy = 5237.0807 kcal/mol (5231.9509 without restraints) Performing minimization step: 3998. Total energy = 5236.4096 kcal/mol (5231.2812 without restraints) Performing minimization step: 3999. Total energy = 5235.7396 kcal/mol (5230.6126 without restraints) Performing minimization step: 4000. Total energy = 5235.0705 kcal/mol (5229.9449 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 5234.4008 kcal/mol (5229.2766 without restraints) Performing minimization step: 4002. Total energy = 5233.7320 kcal/mol (5228.6090 without restraints) Performing minimization step: 4003. Total energy = 5233.0633 kcal/mol (5227.9420 without restraints) Performing minimization step: 4004. Total energy = 5232.3954 kcal/mol (5227.2754 without restraints) Performing minimization step: 4005. Total energy = 5231.7282 kcal/mol (5226.6097 without restraints) Performing minimization step: 4006. Total energy = 5231.0614 kcal/mol (5225.9443 without restraints) Performing minimization step: 4007. Total energy = 5230.3949 kcal/mol (5225.2791 without restraints) Performing minimization step: 4008. Total energy = 5229.7292 kcal/mol (5224.6149 without restraints) Performing minimization step: 4009. Total energy = 5229.0634 kcal/mol (5223.9505 without restraints) Performing minimization step: 4010. Total energy = 5228.3981 kcal/mol (5223.2867 without restraints) Performing minimization step: 4011. Total energy = 5227.7334 kcal/mol (5222.6233 without restraints) Performing minimization step: 4012. Total energy = 5227.0693 kcal/mol (5221.9608 without restraints) Performing minimization step: 4013. Total energy = 5226.4058 kcal/mol (5221.2985 without restraints) Performing minimization step: 4014. Total energy = 5225.7428 kcal/mol (5220.6372 without restraints) Performing minimization step: 4015. Total energy = 5225.0800 kcal/mol (5219.9755 without restraints) Performing minimization step: 4016. Total energy = 5224.4174 kcal/mol (5219.3143 without restraints) Performing minimization step: 4017. Total energy = 5223.7553 kcal/mol (5218.6536 without restraints) Performing minimization step: 4018. Total energy = 5223.0936 kcal/mol (5217.9933 without restraints) Performing minimization step: 4019. Total energy = 5222.4326 kcal/mol (5217.3337 without restraints) Performing minimization step: 4020. Total energy = 5221.7719 kcal/mol (5216.6744 without restraints) Performing minimization step: 4021. Total energy = 5221.1117 kcal/mol (5216.0156 without restraints) Performing minimization step: 4022. Total energy = 5220.4519 kcal/mol (5215.3572 without restraints) Performing minimization step: 4023. Total energy = 5219.7930 kcal/mol (5214.6997 without restraints) Performing minimization step: 4024. Total energy = 5219.1345 kcal/mol (5214.0426 without restraints) Performing minimization step: 4025. Total energy = 5218.4761 kcal/mol (5213.3856 without restraints) Performing minimization step: 4026. Total energy = 5217.8182 kcal/mol (5212.7290 without restraints) Performing minimization step: 4027. Total energy = 5217.1606 kcal/mol (5212.0728 without restraints) Performing minimization step: 4028. Total energy = 5216.5032 kcal/mol (5211.4166 without restraints) Performing minimization step: 4029. Total energy = 5215.8463 kcal/mol (5210.7614 without restraints) Performing minimization step: 4030. Total energy = 5215.1902 kcal/mol (5210.1066 without restraints) Performing minimization step: 4031. Total energy = 5214.5348 kcal/mol (5209.4526 without restraints) Performing minimization step: 4032. Total energy = 5213.8794 kcal/mol (5208.7986 without restraints) Performing minimization step: 4033. Total energy = 5213.2253 kcal/mol (5208.1459 without restraints) Performing minimization step: 4034. Total energy = 5212.5709 kcal/mol (5207.4929 without restraints) Performing minimization step: 4035. Total energy = 5211.9174 kcal/mol (5206.8408 without restraints) Performing minimization step: 4036. Total energy = 5211.2642 kcal/mol (5206.1890 without restraints) Performing minimization step: 4037. Total energy = 5210.6116 kcal/mol (5205.5378 without restraints) Performing minimization step: 4038. Total energy = 5209.9593 kcal/mol (5204.8869 without restraints) Performing minimization step: 4039. Total energy = 5209.3075 kcal/mol (5204.2364 without restraints) Performing minimization step: 4040. Total energy = 5208.6560 kcal/mol (5203.5863 without restraints) Performing minimization step: 4041. Total energy = 5208.0048 kcal/mol (5202.9365 without restraints) Performing minimization step: 4042. Total energy = 5207.3539 kcal/mol (5202.2870 without restraints) Performing minimization step: 4043. Total energy = 5206.7037 kcal/mol (5201.6382 without restraints) Performing minimization step: 4044. Total energy = 5206.0538 kcal/mol (5200.9896 without restraints) Performing minimization step: 4045. Total energy = 5205.4042 kcal/mol (5200.3414 without restraints) Performing minimization step: 4046. Total energy = 5204.7553 kcal/mol (5199.6939 without restraints) Performing minimization step: 4047. Total energy = 5204.1070 kcal/mol (5199.0471 without restraints) Performing minimization step: 4048. Total energy = 5203.4588 kcal/mol (5198.4002 without restraints) Performing minimization step: 4049. Total energy = 5202.8113 kcal/mol (5197.7541 without restraints) Performing minimization step: 4050. Total energy = 5202.1644 kcal/mol (5197.1085 without restraints) Performing minimization step: 4051. Total energy = 5201.5175 kcal/mol (5196.4631 without restraints) Performing minimization step: 4052. Total energy = 5200.8711 kcal/mol (5195.8180 without restraints) Performing minimization step: 4053. Total energy = 5200.2253 kcal/mol (5195.1736 without restraints) Performing minimization step: 4054. Total energy = 5199.5798 kcal/mol (5194.5296 without restraints) Performing minimization step: 4055. Total energy = 5198.9349 kcal/mol (5193.8860 without restraints) Performing minimization step: 4056. Total energy = 5198.2909 kcal/mol (5193.2433 without restraints) Performing minimization step: 4057. Total energy = 5197.6467 kcal/mol (5192.6007 without restraints) Performing minimization step: 4058. Total energy = 5197.0032 kcal/mol (5191.9585 without restraints) Performing minimization step: 4059. Total energy = 5196.3599 kcal/mol (5191.3165 without restraints) Performing minimization step: 4060. Total energy = 5195.7173 kcal/mol (5190.6753 without restraints) Performing minimization step: 4061. Total energy = 5195.0748 kcal/mol (5190.0341 without restraints) Performing minimization step: 4062. Total energy = 5194.4327 kcal/mol (5189.3934 without restraints) Performing minimization step: 4063. Total energy = 5193.7908 kcal/mol (5188.7529 without restraints) Performing minimization step: 4064. Total energy = 5193.1498 kcal/mol (5188.1133 without restraints) Performing minimization step: 4065. Total energy = 5192.5090 kcal/mol (5187.4738 without restraints) Performing minimization step: 4066. Total energy = 5191.8693 kcal/mol (5186.8355 without restraints) Performing minimization step: 4067. Total energy = 5191.2293 kcal/mol (5186.1969 without restraints) Performing minimization step: 4068. Total energy = 5190.5902 kcal/mol (5185.5592 without restraints) Performing minimization step: 4069. Total energy = 5189.9512 kcal/mol (5184.9216 without restraints) Performing minimization step: 4070. Total energy = 5189.3127 kcal/mol (5184.2845 without restraints) Performing minimization step: 4071. Total energy = 5188.6742 kcal/mol (5183.6473 without restraints) Performing minimization step: 4072. Total energy = 5188.0364 kcal/mol (5183.0109 without restraints) Performing minimization step: 4073. Total energy = 5187.3989 kcal/mol (5182.3748 without restraints) Performing minimization step: 4074. Total energy = 5186.7623 kcal/mol (5181.7394 without restraints) Performing minimization step: 4075. Total energy = 5186.1260 kcal/mol (5181.1047 without restraints) Performing minimization step: 4076. Total energy = 5185.4899 kcal/mol (5180.4699 without restraints) Performing minimization step: 4077. Total energy = 5184.8543 kcal/mol (5179.8356 without restraints) Performing minimization step: 4078. Total energy = 5184.2197 kcal/mol (5179.2024 without restraints) Performing minimization step: 4079. Total energy = 5183.5852 kcal/mol (5178.5693 without restraints) Performing minimization step: 4080. Total energy = 5182.9510 kcal/mol (5177.9365 without restraints) Performing minimization step: 4081. Total energy = 5182.3174 kcal/mol (5177.3042 without restraints) Performing minimization step: 4082. Total energy = 5181.6844 kcal/mol (5176.6725 without restraints) Performing minimization step: 4083. Total energy = 5181.0514 kcal/mol (5176.0409 without restraints) Performing minimization step: 4084. Total energy = 5180.4188 kcal/mol (5175.4096 without restraints) Performing minimization step: 4085. Total energy = 5179.7866 kcal/mol (5174.7788 without restraints) Performing minimization step: 4086. Total energy = 5179.1547 kcal/mol (5174.1483 without restraints) Performing minimization step: 4087. Total energy = 5178.5234 kcal/mol (5173.5184 without restraints) Performing minimization step: 4088. Total energy = 5177.8925 kcal/mol (5172.8888 without restraints) Performing minimization step: 4089. Total energy = 5177.2629 kcal/mol (5172.2606 without restraints) Performing minimization step: 4090. Total energy = 5176.6333 kcal/mol (5171.6323 without restraints) Performing minimization step: 4091. Total energy = 5176.0039 kcal/mol (5171.0044 without restraints) Performing minimization step: 4092. Total energy = 5175.3747 kcal/mol (5170.3766 without restraints) Performing minimization step: 4093. Total energy = 5174.7460 kcal/mol (5169.7491 without restraints) Performing minimization step: 4094. Total energy = 5174.1174 kcal/mol (5169.1218 without restraints) Performing minimization step: 4095. Total energy = 5173.4894 kcal/mol (5168.4952 without restraints) Performing minimization step: 4096. Total energy = 5172.8620 kcal/mol (5167.8693 without restraints) Performing minimization step: 4097. Total energy = 5172.2350 kcal/mol (5167.2436 without restraints) Performing minimization step: 4098. Total energy = 5171.6084 kcal/mol (5166.6186 without restraints) Performing minimization step: 4099. Total energy = 5170.9823 kcal/mol (5165.9936 without restraints) Performing minimization step: 4100. Total energy = 5170.3567 kcal/mol (5165.3696 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 5169.7315 kcal/mol (5164.7454 without restraints) Performing minimization step: 4102. Total energy = 5169.1063 kcal/mol (5164.1216 without restraints) Performing minimization step: 4103. Total energy = 5168.4817 kcal/mol (5163.4984 without restraints) Performing minimization step: 4104. Total energy = 5167.8571 kcal/mol (5162.8751 without restraints) Performing minimization step: 4105. Total energy = 5167.2336 kcal/mol (5162.2530 without restraints) Performing minimization step: 4106. Total energy = 5166.6100 kcal/mol (5161.6308 without restraints) Performing minimization step: 4107. Total energy = 5165.9868 kcal/mol (5161.0089 without restraints) Performing minimization step: 4108. Total energy = 5165.3641 kcal/mol (5160.3876 without restraints) Performing minimization step: 4109. Total energy = 5164.7419 kcal/mol (5159.7667 without restraints) Performing minimization step: 4110. Total energy = 5164.1202 kcal/mol (5159.1463 without restraints) Performing minimization step: 4111. Total energy = 5163.4988 kcal/mol (5158.5263 without restraints) Performing minimization step: 4112. Total energy = 5162.8778 kcal/mol (5157.9067 without restraints) Performing minimization step: 4113. Total energy = 5162.2572 kcal/mol (5157.2875 without restraints) Performing minimization step: 4114. Total energy = 5161.6371 kcal/mol (5156.6687 without restraints) Performing minimization step: 4115. Total energy = 5161.0174 kcal/mol (5156.0502 without restraints) Performing minimization step: 4116. Total energy = 5160.3982 kcal/mol (5155.4324 without restraints) Performing minimization step: 4117. Total energy = 5159.7792 kcal/mol (5154.8148 without restraints) Performing minimization step: 4118. Total energy = 5159.1609 kcal/mol (5154.1978 without restraints) Performing minimization step: 4119. Total energy = 5158.5427 kcal/mol (5153.5810 without restraints) Performing minimization step: 4120. Total energy = 5157.9252 kcal/mol (5152.9649 without restraints) Performing minimization step: 4121. Total energy = 5157.3083 kcal/mol (5152.3493 without restraints) Performing minimization step: 4122. Total energy = 5156.6916 kcal/mol (5151.7339 without restraints) Performing minimization step: 4123. Total energy = 5156.0750 kcal/mol (5151.1187 without restraints) Performing minimization step: 4124. Total energy = 5155.4592 kcal/mol (5150.5042 without restraints) Performing minimization step: 4125. Total energy = 5154.8439 kcal/mol (5149.8904 without restraints) Performing minimization step: 4126. Total energy = 5154.2288 kcal/mol (5149.2766 without restraints) Performing minimization step: 4127. Total energy = 5153.6140 kcal/mol (5148.6630 without restraints) Performing minimization step: 4128. Total energy = 5152.9995 kcal/mol (5148.0499 without restraints) Performing minimization step: 4129. Total energy = 5152.3857 kcal/mol (5147.4374 without restraints) Performing minimization step: 4130. Total energy = 5151.7716 kcal/mol (5146.8245 without restraints) Performing minimization step: 4131. Total energy = 5151.1582 kcal/mol (5146.2126 without restraints) Performing minimization step: 4132. Total energy = 5150.5456 kcal/mol (5145.6013 without restraints) Performing minimization step: 4133. Total energy = 5149.9332 kcal/mol (5144.9902 without restraints) Performing minimization step: 4134. Total energy = 5149.3213 kcal/mol (5144.3796 without restraints) Performing minimization step: 4135. Total energy = 5148.7095 kcal/mol (5143.7693 without restraints) Performing minimization step: 4136. Total energy = 5148.0981 kcal/mol (5143.1591 without restraints) Performing minimization step: 4137. Total energy = 5147.4871 kcal/mol (5142.5495 without restraints) Performing minimization step: 4138. Total energy = 5146.8766 kcal/mol (5141.9404 without restraints) Performing minimization step: 4139. Total energy = 5146.2665 kcal/mol (5141.3316 without restraints) Performing minimization step: 4140. Total energy = 5145.6568 kcal/mol (5140.7232 without restraints) Performing minimization step: 4141. Total energy = 5145.0474 kcal/mol (5140.1150 without restraints) Performing minimization step: 4142. Total energy = 5144.4384 kcal/mol (5139.5074 without restraints) Performing minimization step: 4143. Total energy = 5143.8302 kcal/mol (5138.9007 without restraints) Performing minimization step: 4144. Total energy = 5143.2221 kcal/mol (5138.2937 without restraints) Performing minimization step: 4145. Total energy = 5142.6146 kcal/mol (5137.6877 without restraints) Performing minimization step: 4146. Total energy = 5142.0073 kcal/mol (5137.0817 without restraints) Performing minimization step: 4147. Total energy = 5141.4009 kcal/mol (5136.4767 without restraints) Performing minimization step: 4148. Total energy = 5140.7944 kcal/mol (5135.8715 without restraints) Performing minimization step: 4149. Total energy = 5140.1885 kcal/mol (5135.2669 without restraints) Performing minimization step: 4150. Total energy = 5139.5829 kcal/mol (5134.6626 without restraints) Performing minimization step: 4151. Total energy = 5138.9775 kcal/mol (5134.0586 without restraints) Performing minimization step: 4152. Total energy = 5138.3729 kcal/mol (5133.4553 without restraints) Performing minimization step: 4153. Total energy = 5137.7684 kcal/mol (5132.8520 without restraints) Performing minimization step: 4154. Total energy = 5137.1644 kcal/mol (5132.2495 without restraints) Performing minimization step: 4155. Total energy = 5136.5610 kcal/mol (5131.6474 without restraints) Performing minimization step: 4156. Total energy = 5135.9582 kcal/mol (5131.0459 without restraints) Performing minimization step: 4157. Total energy = 5135.3554 kcal/mol (5130.4444 without restraints) Performing minimization step: 4158. Total energy = 5134.7531 kcal/mol (5129.8434 without restraints) Performing minimization step: 4159. Total energy = 5134.1509 kcal/mol (5129.2425 without restraints) Performing minimization step: 4160. Total energy = 5133.5494 kcal/mol (5128.6423 without restraints) Performing minimization step: 4161. Total energy = 5132.9482 kcal/mol (5128.0426 without restraints) Performing minimization step: 4162. Total energy = 5132.3468 kcal/mol (5127.4423 without restraints) Performing minimization step: 4163. Total energy = 5131.7459 kcal/mol (5126.8429 without restraints) Performing minimization step: 4164. Total energy = 5131.1457 kcal/mol (5126.2439 without restraints) Performing minimization step: 4165. Total energy = 5130.5459 kcal/mol (5125.6455 without restraints) Performing minimization step: 4166. Total energy = 5129.9463 kcal/mol (5125.0472 without restraints) Performing minimization step: 4167. Total energy = 5129.3479 kcal/mol (5124.4501 without restraints) Performing minimization step: 4168. Total energy = 5128.7490 kcal/mol (5123.8525 without restraints) Performing minimization step: 4169. Total energy = 5128.1508 kcal/mol (5123.2557 without restraints) Performing minimization step: 4170. Total energy = 5127.5524 kcal/mol (5122.6586 without restraints) Performing minimization step: 4171. Total energy = 5126.9547 kcal/mol (5122.0622 without restraints) Performing minimization step: 4172. Total energy = 5126.3574 kcal/mol (5121.4664 without restraints) Performing minimization step: 4173. Total energy = 5125.7607 kcal/mol (5120.8709 without restraints) Performing minimization step: 4174. Total energy = 5125.1645 kcal/mol (5120.2759 without restraints) Performing minimization step: 4175. Total energy = 5124.5683 kcal/mol (5119.6810 without restraints) Performing minimization step: 4176. Total energy = 5123.9728 kcal/mol (5119.0871 without restraints) Performing minimization step: 4177. Total energy = 5123.3777 kcal/mol (5118.4932 without restraints) Performing minimization step: 4178. Total energy = 5122.7824 kcal/mol (5117.8991 without restraints) Performing minimization step: 4179. Total energy = 5122.1880 kcal/mol (5117.3060 without restraints) Performing minimization step: 4180. Total energy = 5121.5940 kcal/mol (5116.7133 without restraints) Performing minimization step: 4181. Total energy = 5121.0005 kcal/mol (5116.1213 without restraints) Performing minimization step: 4182. Total energy = 5120.4073 kcal/mol (5115.5293 without restraints) Performing minimization step: 4183. Total energy = 5119.8146 kcal/mol (5114.9378 without restraints) Performing minimization step: 4184. Total energy = 5119.2219 kcal/mol (5114.3464 without restraints) Performing minimization step: 4185. Total energy = 5118.6292 kcal/mol (5113.7551 without restraints) Performing minimization step: 4186. Total energy = 5118.0375 kcal/mol (5113.1648 without restraints) Performing minimization step: 4187. Total energy = 5117.4459 kcal/mol (5112.5744 without restraints) Performing minimization step: 4188. Total energy = 5116.8549 kcal/mol (5111.9847 without restraints) Performing minimization step: 4189. Total energy = 5116.2640 kcal/mol (5111.3951 without restraints) Performing minimization step: 4190. Total energy = 5115.6735 kcal/mol (5110.8060 without restraints) Performing minimization step: 4191. Total energy = 5115.0834 kcal/mol (5110.2171 without restraints) Performing minimization step: 4192. Total energy = 5114.4940 kcal/mol (5109.6290 without restraints) Performing minimization step: 4193. Total energy = 5113.9049 kcal/mol (5109.0414 without restraints) Performing minimization step: 4194. Total energy = 5113.3164 kcal/mol (5108.4541 without restraints) Performing minimization step: 4195. Total energy = 5112.7280 kcal/mol (5107.8670 without restraints) Performing minimization step: 4196. Total energy = 5112.1397 kcal/mol (5107.2801 without restraints) Performing minimization step: 4197. Total energy = 5111.5520 kcal/mol (5106.6936 without restraints) Performing minimization step: 4198. Total energy = 5110.9648 kcal/mol (5106.1077 without restraints) Performing minimization step: 4199. Total energy = 5110.3779 kcal/mol (5105.5220 without restraints) Performing minimization step: 4200. Total energy = 5109.7912 kcal/mol (5104.9366 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 5109.2049 kcal/mol (5104.3517 without restraints) Performing minimization step: 4202. Total energy = 5108.6189 kcal/mol (5103.7672 without restraints) Performing minimization step: 4203. Total energy = 5108.0334 kcal/mol (5103.1828 without restraints) Performing minimization step: 4204. Total energy = 5107.4479 kcal/mol (5102.5986 without restraints) Performing minimization step: 4205. Total energy = 5106.8633 kcal/mol (5102.0153 without restraints) Performing minimization step: 4206. Total energy = 5106.2791 kcal/mol (5101.4325 without restraints) Performing minimization step: 4207. Total energy = 5105.6949 kcal/mol (5100.8494 without restraints) Performing minimization step: 4208. Total energy = 5105.1114 kcal/mol (5100.2673 without restraints) Performing minimization step: 4209. Total energy = 5104.5278 kcal/mol (5099.6850 without restraints) Performing minimization step: 4210. Total energy = 5103.9446 kcal/mol (5099.1032 without restraints) Performing minimization step: 4211. Total energy = 5103.3623 kcal/mol (5098.5220 without restraints) Performing minimization step: 4212. Total energy = 5102.7797 kcal/mol (5097.9408 without restraints) Performing minimization step: 4213. Total energy = 5102.1980 kcal/mol (5097.3605 without restraints) Performing minimization step: 4214. Total energy = 5101.6164 kcal/mol (5096.7800 without restraints) Performing minimization step: 4215. Total energy = 5101.0356 kcal/mol (5096.2005 without restraints) Performing minimization step: 4216. Total energy = 5100.4545 kcal/mol (5095.6208 without restraints) Performing minimization step: 4217. Total energy = 5099.8739 kcal/mol (5095.0415 without restraints) Performing minimization step: 4218. Total energy = 5099.2936 kcal/mol (5094.4624 without restraints) Performing minimization step: 4219. Total energy = 5098.7140 kcal/mol (5093.8842 without restraints) Performing minimization step: 4220. Total energy = 5098.1349 kcal/mol (5093.3063 without restraints) Performing minimization step: 4221. Total energy = 5097.5556 kcal/mol (5092.7284 without restraints) Performing minimization step: 4222. Total energy = 5096.9766 kcal/mol (5092.1507 without restraints) Performing minimization step: 4223. Total energy = 5096.3979 kcal/mol (5091.5730 without restraints) Performing minimization step: 4224. Total energy = 5095.8196 kcal/mol (5090.9961 without restraints) Performing minimization step: 4225. Total energy = 5095.2422 kcal/mol (5090.4200 without restraints) Performing minimization step: 4226. Total energy = 5094.6646 kcal/mol (5089.8438 without restraints) Performing minimization step: 4227. Total energy = 5094.0876 kcal/mol (5089.2681 without restraints) Performing minimization step: 4228. Total energy = 5093.5107 kcal/mol (5088.6924 without restraints) Performing minimization step: 4229. Total energy = 5092.9342 kcal/mol (5088.1173 without restraints) Performing minimization step: 4230. Total energy = 5092.3581 kcal/mol (5087.5424 without restraints) Performing minimization step: 4231. Total energy = 5091.7822 kcal/mol (5086.9678 without restraints) Performing minimization step: 4232. Total energy = 5091.2067 kcal/mol (5086.3936 without restraints) Performing minimization step: 4233. Total energy = 5090.6323 kcal/mol (5085.8206 without restraints) Performing minimization step: 4234. Total energy = 5090.0584 kcal/mol (5085.2479 without restraints) Performing minimization step: 4235. Total energy = 5089.4841 kcal/mol (5084.6750 without restraints) Performing minimization step: 4236. Total energy = 5088.9101 kcal/mol (5084.1021 without restraints) Performing minimization step: 4237. Total energy = 5088.3366 kcal/mol (5083.5300 without restraints) Performing minimization step: 4238. Total energy = 5087.7633 kcal/mol (5082.9580 without restraints) Performing minimization step: 4239. Total energy = 5087.1903 kcal/mol (5082.3862 without restraints) Performing minimization step: 4240. Total energy = 5086.6178 kcal/mol (5081.8150 without restraints) Performing minimization step: 4241. Total energy = 5086.0453 kcal/mol (5081.2437 without restraints) Performing minimization step: 4242. Total energy = 5085.4736 kcal/mol (5080.6736 without restraints) Performing minimization step: 4243. Total energy = 5084.9019 kcal/mol (5080.1029 without restraints) Performing minimization step: 4244. Total energy = 5084.3306 kcal/mol (5079.5329 without restraints) Performing minimization step: 4245. Total energy = 5083.7594 kcal/mol (5078.9630 without restraints) Performing minimization step: 4246. Total energy = 5083.1888 kcal/mol (5078.3937 without restraints) Performing minimization step: 4247. Total energy = 5082.6186 kcal/mol (5077.8249 without restraints) Performing minimization step: 4248. Total energy = 5082.0487 kcal/mol (5077.2561 without restraints) Performing minimization step: 4249. Total energy = 5081.4789 kcal/mol (5076.6876 without restraints) Performing minimization step: 4250. Total energy = 5080.9095 kcal/mol (5076.1195 without restraints) Performing minimization step: 4251. Total energy = 5080.3404 kcal/mol (5075.5516 without restraints) Performing minimization step: 4252. Total energy = 5079.7716 kcal/mol (5074.9841 without restraints) Performing minimization step: 4253. Total energy = 5079.2034 kcal/mol (5074.4172 without restraints) Performing minimization step: 4254. Total energy = 5078.6356 kcal/mol (5073.8507 without restraints) Performing minimization step: 4255. Total energy = 5078.0680 kcal/mol (5073.2843 without restraints) Performing minimization step: 4256. Total energy = 5077.5005 kcal/mol (5072.7181 without restraints) Performing minimization step: 4257. Total energy = 5076.9334 kcal/mol (5072.1523 without restraints) Performing minimization step: 4258. Total energy = 5076.3670 kcal/mol (5071.5871 without restraints) Performing minimization step: 4259. Total energy = 5075.8007 kcal/mol (5071.0224 without restraints) Performing minimization step: 4260. Total energy = 5075.2354 kcal/mol (5070.4581 without restraints) Performing minimization step: 4261. Total energy = 5074.6700 kcal/mol (5069.8939 without restraints) Performing minimization step: 4262. Total energy = 5074.1046 kcal/mol (5069.3298 without restraints) Performing minimization step: 4263. Total energy = 5073.5392 kcal/mol (5068.7657 without restraints) Performing minimization step: 4264. Total energy = 5072.9748 kcal/mol (5068.2026 without restraints) Performing minimization step: 4265. Total energy = 5072.4106 kcal/mol (5067.6397 without restraints) Performing minimization step: 4266. Total energy = 5071.8464 kcal/mol (5067.0767 without restraints) Performing minimization step: 4267. Total energy = 5071.2828 kcal/mol (5066.5143 without restraints) Performing minimization step: 4268. Total energy = 5070.7197 kcal/mol (5065.9525 without restraints) Performing minimization step: 4269. Total energy = 5070.1565 kcal/mol (5065.3906 without restraints) Performing minimization step: 4270. Total energy = 5069.5939 kcal/mol (5064.8294 without restraints) Performing minimization step: 4271. Total energy = 5069.0318 kcal/mol (5064.2685 without restraints) Performing minimization step: 4272. Total energy = 5068.4701 kcal/mol (5063.7081 without restraints) Performing minimization step: 4273. Total energy = 5067.9083 kcal/mol (5063.1474 without restraints) Performing minimization step: 4274. Total energy = 5067.3467 kcal/mol (5062.5871 without restraints) Performing minimization step: 4275. Total energy = 5066.7854 kcal/mol (5062.0271 without restraints) Performing minimization step: 4276. Total energy = 5066.2244 kcal/mol (5061.4673 without restraints) Performing minimization step: 4277. Total energy = 5065.6640 kcal/mol (5060.9083 without restraints) Performing minimization step: 4278. Total energy = 5065.1040 kcal/mol (5060.3494 without restraints) Performing minimization step: 4279. Total energy = 5064.5444 kcal/mol (5059.7913 without restraints) Performing minimization step: 4280. Total energy = 5063.9850 kcal/mol (5059.2331 without restraints) Performing minimization step: 4281. Total energy = 5063.4261 kcal/mol (5058.6753 without restraints) Performing minimization step: 4282. Total energy = 5062.8670 kcal/mol (5058.1174 without restraints) Performing minimization step: 4283. Total energy = 5062.3081 kcal/mol (5057.5599 without restraints) Performing minimization step: 4284. Total energy = 5061.7497 kcal/mol (5057.0027 without restraints) Performing minimization step: 4285. Total energy = 5061.1914 kcal/mol (5056.4456 without restraints) Performing minimization step: 4286. Total energy = 5060.6338 kcal/mol (5055.8892 without restraints) Performing minimization step: 4287. Total energy = 5060.0763 kcal/mol (5055.3331 without restraints) Performing minimization step: 4288. Total energy = 5059.5189 kcal/mol (5054.7772 without restraints) Performing minimization step: 4289. Total energy = 5058.9621 kcal/mol (5054.2214 without restraints) Performing minimization step: 4290. Total energy = 5058.4051 kcal/mol (5053.6657 without restraints) Performing minimization step: 4291. Total energy = 5057.8491 kcal/mol (5053.1109 without restraints) Performing minimization step: 4292. Total energy = 5057.2931 kcal/mol (5052.5560 without restraints) Performing minimization step: 4293. Total energy = 5056.7370 kcal/mol (5052.0013 without restraints) Performing minimization step: 4294. Total energy = 5056.1815 kcal/mol (5051.4470 without restraints) Performing minimization step: 4295. Total energy = 5055.6265 kcal/mol (5050.8932 without restraints) Performing minimization step: 4296. Total energy = 5055.0717 kcal/mol (5050.3398 without restraints) Performing minimization step: 4297. Total energy = 5054.5172 kcal/mol (5049.7865 without restraints) Performing minimization step: 4298. Total energy = 5053.9631 kcal/mol (5049.2336 without restraints) Performing minimization step: 4299. Total energy = 5053.4090 kcal/mol (5048.6808 without restraints) Performing minimization step: 4300. Total energy = 5052.8555 kcal/mol (5048.1286 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 5052.3023 kcal/mol (5047.5766 without restraints) Performing minimization step: 4302. Total energy = 5051.7497 kcal/mol (5047.0252 without restraints) Performing minimization step: 4303. Total energy = 5051.1967 kcal/mol (5046.4735 without restraints) Performing minimization step: 4304. Total energy = 5050.6444 kcal/mol (5045.9224 without restraints) Performing minimization step: 4305. Total energy = 5050.0921 kcal/mol (5045.3714 without restraints) Performing minimization step: 4306. Total energy = 5049.5403 kcal/mol (5044.8208 without restraints) Performing minimization step: 4307. Total energy = 5048.9891 kcal/mol (5044.2709 without restraints) Performing minimization step: 4308. Total energy = 5048.4379 kcal/mol (5043.7209 without restraints) Performing minimization step: 4309. Total energy = 5047.8870 kcal/mol (5043.1713 without restraints) Performing minimization step: 4310. Total energy = 5047.3363 kcal/mol (5042.6216 without restraints) Performing minimization step: 4311. Total energy = 5046.7856 kcal/mol (5042.0723 without restraints) Performing minimization step: 4312. Total energy = 5046.2350 kcal/mol (5041.5230 without restraints) Performing minimization step: 4313. Total energy = 5045.6853 kcal/mol (5040.9745 without restraints) Performing minimization step: 4314. Total energy = 5045.1357 kcal/mol (5040.4263 without restraints) Performing minimization step: 4315. Total energy = 5044.5864 kcal/mol (5039.8781 without restraints) Performing minimization step: 4316. Total energy = 5044.0372 kcal/mol (5039.3299 without restraints) Performing minimization step: 4317. Total energy = 5043.4881 kcal/mol (5038.7823 without restraints) Performing minimization step: 4318. Total energy = 5042.9397 kcal/mol (5038.2350 without restraints) Performing minimization step: 4319. Total energy = 5042.3911 kcal/mol (5037.6877 without restraints) Performing minimization step: 4320. Total energy = 5041.8434 kcal/mol (5037.1412 without restraints) Performing minimization step: 4321. Total energy = 5041.2957 kcal/mol (5036.5948 without restraints) Performing minimization step: 4322. Total energy = 5040.7481 kcal/mol (5036.0485 without restraints) Performing minimization step: 4323. Total energy = 5040.2008 kcal/mol (5035.5023 without restraints) Performing minimization step: 4324. Total energy = 5039.6538 kcal/mol (5034.9565 without restraints) Performing minimization step: 4325. Total energy = 5039.1073 kcal/mol (5034.4113 without restraints) Performing minimization step: 4326. Total energy = 5038.5612 kcal/mol (5033.8667 without restraints) Performing minimization step: 4327. Total energy = 5038.0154 kcal/mol (5033.3219 without restraints) Performing minimization step: 4328. Total energy = 5037.4703 kcal/mol (5032.7780 without restraints) Performing minimization step: 4329. Total energy = 5036.9247 kcal/mol (5032.2337 without restraints) Performing minimization step: 4330. Total energy = 5036.3791 kcal/mol (5031.6893 without restraints) Performing minimization step: 4331. Total energy = 5035.8345 kcal/mol (5031.1459 without restraints) Performing minimization step: 4332. Total energy = 5035.2896 kcal/mol (5030.6023 without restraints) Performing minimization step: 4333. Total energy = 5034.7450 kcal/mol (5030.0589 without restraints) Performing minimization step: 4334. Total energy = 5034.2003 kcal/mol (5029.5154 without restraints) Performing minimization step: 4335. Total energy = 5033.6565 kcal/mol (5028.9728 without restraints) Performing minimization step: 4336. Total energy = 5033.1122 kcal/mol (5028.4296 without restraints) Performing minimization step: 4337. Total energy = 5032.5684 kcal/mol (5027.8872 without restraints) Performing minimization step: 4338. Total energy = 5032.0249 kcal/mol (5027.3448 without restraints) Performing minimization step: 4339. Total energy = 5031.4827 kcal/mol (5026.8039 without restraints) Performing minimization step: 4340. Total energy = 5030.9398 kcal/mol (5026.2622 without restraints) Performing minimization step: 4341. Total energy = 5030.3972 kcal/mol (5025.7208 without restraints) Performing minimization step: 4342. Total energy = 5029.8551 kcal/mol (5025.1800 without restraints) Performing minimization step: 4343. Total energy = 5029.3133 kcal/mol (5024.6394 without restraints) Performing minimization step: 4344. Total energy = 5028.7715 kcal/mol (5024.0989 without restraints) Performing minimization step: 4345. Total energy = 5028.2300 kcal/mol (5023.5586 without restraints) Performing minimization step: 4346. Total energy = 5027.6887 kcal/mol (5023.0185 without restraints) Performing minimization step: 4347. Total energy = 5027.1476 kcal/mol (5022.4785 without restraints) Performing minimization step: 4348. Total energy = 5026.6068 kcal/mol (5021.9389 without restraints) Performing minimization step: 4349. Total energy = 5026.0660 kcal/mol (5021.3993 without restraints) Performing minimization step: 4350. Total energy = 5025.5254 kcal/mol (5020.8600 without restraints) Performing minimization step: 4351. Total energy = 5024.9853 kcal/mol (5020.3211 without restraints) Performing minimization step: 4352. Total energy = 5024.4454 kcal/mol (5019.7826 without restraints) Performing minimization step: 4353. Total energy = 5023.9062 kcal/mol (5019.2444 without restraints) Performing minimization step: 4354. Total energy = 5023.3670 kcal/mol (5018.7065 without restraints) Performing minimization step: 4355. Total energy = 5022.8277 kcal/mol (5018.1683 without restraints) Performing minimization step: 4356. Total energy = 5022.2886 kcal/mol (5017.6304 without restraints) Performing minimization step: 4357. Total energy = 5021.7498 kcal/mol (5017.0930 without restraints) Performing minimization step: 4358. Total energy = 5021.2112 kcal/mol (5016.5553 without restraints) Performing minimization step: 4359. Total energy = 5020.6726 kcal/mol (5016.0181 without restraints) Performing minimization step: 4360. Total energy = 5020.1345 kcal/mol (5015.4812 without restraints) Performing minimization step: 4361. Total energy = 5019.5965 kcal/mol (5014.9444 without restraints) Performing minimization step: 4362. Total energy = 5019.0592 kcal/mol (5014.4083 without restraints) Performing minimization step: 4363. Total energy = 5018.5219 kcal/mol (5013.8722 without restraints) Performing minimization step: 4364. Total energy = 5017.9845 kcal/mol (5013.3360 without restraints) Performing minimization step: 4365. Total energy = 5017.4473 kcal/mol (5012.8000 without restraints) Performing minimization step: 4366. Total energy = 5016.9107 kcal/mol (5012.2646 without restraints) Performing minimization step: 4367. Total energy = 5016.3739 kcal/mol (5011.7290 without restraints) Performing minimization step: 4368. Total energy = 5015.8373 kcal/mol (5011.1936 without restraints) Performing minimization step: 4369. Total energy = 5015.3011 kcal/mol (5010.6587 without restraints) Performing minimization step: 4370. Total energy = 5014.7653 kcal/mol (5010.1240 without restraints) Performing minimization step: 4371. Total energy = 5014.2294 kcal/mol (5009.5893 without restraints) Performing minimization step: 4372. Total energy = 5013.6941 kcal/mol (5009.0552 without restraints) Performing minimization step: 4373. Total energy = 5013.1585 kcal/mol (5008.5208 without restraints) Performing minimization step: 4374. Total energy = 5012.6238 kcal/mol (5007.9874 without restraints) Performing minimization step: 4375. Total energy = 5012.0891 kcal/mol (5007.4539 without restraints) Performing minimization step: 4376. Total energy = 5011.5549 kcal/mol (5006.9208 without restraints) Performing minimization step: 4377. Total energy = 5011.0201 kcal/mol (5006.3872 without restraints) Performing minimization step: 4378. Total energy = 5010.4856 kcal/mol (5005.8538 without restraints) Performing minimization step: 4379. Total energy = 5009.9506 kcal/mol (5005.3201 without restraints) Performing minimization step: 4380. Total energy = 5009.4162 kcal/mol (5004.7869 without restraints) Performing minimization step: 4381. Total energy = 5008.8822 kcal/mol (5004.2540 without restraints) Performing minimization step: 4382. Total energy = 5008.3483 kcal/mol (5003.7213 without restraints) Performing minimization step: 4383. Total energy = 5007.8149 kcal/mol (5003.1892 without restraints) Performing minimization step: 4384. Total energy = 5007.2821 kcal/mol (5002.6576 without restraints) Performing minimization step: 4385. Total energy = 5006.7488 kcal/mol (5002.1254 without restraints) Performing minimization step: 4386. Total energy = 5006.2155 kcal/mol (5001.5933 without restraints) Performing minimization step: 4387. Total energy = 5005.6826 kcal/mol (5001.0616 without restraints) Performing minimization step: 4388. Total energy = 5005.1498 kcal/mol (5000.5300 without restraints) Performing minimization step: 4389. Total energy = 5004.6172 kcal/mol (4999.9985 without restraints) Performing minimization step: 4390. Total energy = 5004.0849 kcal/mol (4999.4674 without restraints) Performing minimization step: 4391. Total energy = 5003.5526 kcal/mol (4998.9363 without restraints) Performing minimization step: 4392. Total energy = 5003.0202 kcal/mol (4998.4051 without restraints) Performing minimization step: 4393. Total energy = 5002.4883 kcal/mol (4997.8743 without restraints) Performing minimization step: 4394. Total energy = 5001.9565 kcal/mol (4997.3437 without restraints) Performing minimization step: 4395. Total energy = 5001.4250 kcal/mol (4996.8134 without restraints) Performing minimization step: 4396. Total energy = 5000.8938 kcal/mol (4996.2833 without restraints) Performing minimization step: 4397. Total energy = 5000.3621 kcal/mol (4995.7529 without restraints) Performing minimization step: 4398. Total energy = 4999.8311 kcal/mol (4995.2230 without restraints) Performing minimization step: 4399. Total energy = 4999.3003 kcal/mol (4994.6934 without restraints) Performing minimization step: 4400. Total energy = 4998.7697 kcal/mol (4994.1639 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 4998.2392 kcal/mol (4993.6348 without restraints) Performing minimization step: 4402. Total energy = 4997.7086 kcal/mol (4993.1053 without restraints) Performing minimization step: 4403. Total energy = 4997.1785 kcal/mol (4992.5764 without restraints) Performing minimization step: 4404. Total energy = 4996.6484 kcal/mol (4992.0474 without restraints) Performing minimization step: 4405. Total energy = 4996.1182 kcal/mol (4991.5184 without restraints) Performing minimization step: 4406. Total energy = 4995.5881 kcal/mol (4990.9895 without restraints) Performing minimization step: 4407. Total energy = 4995.0583 kcal/mol (4990.4607 without restraints) Performing minimization step: 4408. Total energy = 4994.5285 kcal/mol (4989.9321 without restraints) Performing minimization step: 4409. Total energy = 4993.9996 kcal/mol (4989.4043 without restraints) Performing minimization step: 4410. Total energy = 4993.4701 kcal/mol (4988.8762 without restraints) Performing minimization step: 4411. Total energy = 4992.9409 kcal/mol (4988.3482 without restraints) Performing minimization step: 4412. Total energy = 4992.4121 kcal/mol (4987.8204 without restraints) Performing minimization step: 4413. Total energy = 4991.8830 kcal/mol (4987.2924 without restraints) Performing minimization step: 4414. Total energy = 4991.3542 kcal/mol (4986.7648 without restraints) Performing minimization step: 4415. Total energy = 4990.8254 kcal/mol (4986.2372 without restraints) Performing minimization step: 4416. Total energy = 4990.2986 kcal/mol (4985.7096 without restraints) Performing minimization step: 4417. Total energy = 4989.7681 kcal/mol (4985.1821 without restraints) Performing minimization step: 4418. Total energy = 4989.2396 kcal/mol (4984.6549 without restraints) Performing minimization step: 4419. Total energy = 4988.7113 kcal/mol (4984.1277 without restraints) Performing minimization step: 4420. Total energy = 4988.1830 kcal/mol (4983.6005 without restraints) Performing minimization step: 4421. Total energy = 4987.6551 kcal/mol (4983.0738 without restraints) Performing minimization step: 4422. Total energy = 4987.1274 kcal/mol (4982.5472 without restraints) Performing minimization step: 4423. Total energy = 4986.5997 kcal/mol (4982.0207 without restraints) Performing minimization step: 4424. Total energy = 4986.0717 kcal/mol (4981.4938 without restraints) Performing minimization step: 4425. Total energy = 4985.5438 kcal/mol (4980.9671 without restraints) Performing minimization step: 4426. Total energy = 4985.0163 kcal/mol (4980.4408 without restraints) Performing minimization step: 4427. Total energy = 4984.4886 kcal/mol (4979.9142 without restraints) Performing minimization step: 4428. Total energy = 4983.9609 kcal/mol (4979.3876 without restraints) Performing minimization step: 4429. Total energy = 4983.4334 kcal/mol (4978.8613 without restraints) Performing minimization step: 4430. Total energy = 4982.9059 kcal/mol (4978.3349 without restraints) Performing minimization step: 4431. Total energy = 4982.3785 kcal/mol (4977.8086 without restraints) Performing minimization step: 4432. Total energy = 4981.8511 kcal/mol (4977.2824 without restraints) Performing minimization step: 4433. Total energy = 4981.3244 kcal/mol (4976.7569 without restraints) Performing minimization step: 4434. Total energy = 4980.7973 kcal/mol (4976.2309 without restraints) Performing minimization step: 4435. Total energy = 4980.2705 kcal/mol (4975.7051 without restraints) Performing minimization step: 4436. Total energy = 4979.7437 kcal/mol (4975.1795 without restraints) Performing minimization step: 4437. Total energy = 4979.2164 kcal/mol (4974.6533 without restraints) Performing minimization step: 4438. Total energy = 4978.6893 kcal/mol (4974.1274 without restraints) Performing minimization step: 4439. Total energy = 4978.1624 kcal/mol (4973.6016 without restraints) Performing minimization step: 4440. Total energy = 4977.6357 kcal/mol (4973.0762 without restraints) Performing minimization step: 4441. Total energy = 4977.1095 kcal/mol (4972.5510 without restraints) Performing minimization step: 4442. Total energy = 4976.5830 kcal/mol (4972.0257 without restraints) Performing minimization step: 4443. Total energy = 4976.0567 kcal/mol (4971.5004 without restraints) Performing minimization step: 4444. Total energy = 4975.5300 kcal/mol (4970.9748 without restraints) Performing minimization step: 4445. Total energy = 4975.0035 kcal/mol (4970.4495 without restraints) Performing minimization step: 4446. Total energy = 4974.4772 kcal/mol (4969.9243 without restraints) Performing minimization step: 4447. Total energy = 4973.9506 kcal/mol (4969.3988 without restraints) Performing minimization step: 4448. Total energy = 4973.4240 kcal/mol (4968.8734 without restraints) Performing minimization step: 4449. Total energy = 4972.8973 kcal/mol (4968.3477 without restraints) Performing minimization step: 4450. Total energy = 4972.3710 kcal/mol (4967.8226 without restraints) Performing minimization step: 4451. Total energy = 4971.8447 kcal/mol (4967.2975 without restraints) Performing minimization step: 4452. Total energy = 4971.3179 kcal/mol (4966.7717 without restraints) Performing minimization step: 4453. Total energy = 4970.7915 kcal/mol (4966.2464 without restraints) Performing minimization step: 4454. Total energy = 4970.2653 kcal/mol (4965.7213 without restraints) Performing minimization step: 4455. Total energy = 4969.7393 kcal/mol (4965.1966 without restraints) Performing minimization step: 4456. Total energy = 4969.2133 kcal/mol (4964.6715 without restraints) Performing minimization step: 4457. Total energy = 4968.6869 kcal/mol (4964.1464 without restraints) Performing minimization step: 4458. Total energy = 4968.1609 kcal/mol (4963.6214 without restraints) Performing minimization step: 4459. Total energy = 4967.6345 kcal/mol (4963.0961 without restraints) Performing minimization step: 4460. Total energy = 4967.1092 kcal/mol (4962.5720 without restraints) Performing minimization step: 4461. Total energy = 4966.5831 kcal/mol (4962.0469 without restraints) Performing minimization step: 4462. Total energy = 4966.0567 kcal/mol (4961.5216 without restraints) Performing minimization step: 4463. Total energy = 4965.5300 kcal/mol (4960.9961 without restraints) Performing minimization step: 4464. Total energy = 4965.0036 kcal/mol (4960.4707 without restraints) Performing minimization step: 4465. Total energy = 4964.4771 kcal/mol (4959.9454 without restraints) Performing minimization step: 4466. Total energy = 4963.9506 kcal/mol (4959.4199 without restraints) Performing minimization step: 4467. Total energy = 4963.4243 kcal/mol (4958.8949 without restraints) Performing minimization step: 4468. Total energy = 4962.8979 kcal/mol (4958.3694 without restraints) Performing minimization step: 4469. Total energy = 4962.3717 kcal/mol (4957.8444 without restraints) Performing minimization step: 4470. Total energy = 4961.8452 kcal/mol (4957.3189 without restraints) Performing minimization step: 4471. Total energy = 4961.3191 kcal/mol (4956.7940 without restraints) Performing minimization step: 4472. Total energy = 4960.7926 kcal/mol (4956.2684 without restraints) Performing minimization step: 4473. Total energy = 4960.2659 kcal/mol (4955.7429 without restraints) Performing minimization step: 4474. Total energy = 4959.7393 kcal/mol (4955.2175 without restraints) Performing minimization step: 4475. Total energy = 4959.2126 kcal/mol (4954.6918 without restraints) Performing minimization step: 4476. Total energy = 4958.6856 kcal/mol (4954.1659 without restraints) Performing minimization step: 4477. Total energy = 4958.1589 kcal/mol (4953.6402 without restraints) Performing minimization step: 4478. Total energy = 4957.6323 kcal/mol (4953.1147 without restraints) Performing minimization step: 4479. Total energy = 4957.1052 kcal/mol (4952.5887 without restraints) Performing minimization step: 4480. Total energy = 4956.5783 kcal/mol (4952.0632 without restraints) Performing minimization step: 4481. Total energy = 4956.0518 kcal/mol (4951.5374 without restraints) Performing minimization step: 4482. Total energy = 4955.5250 kcal/mol (4951.0117 without restraints) Performing minimization step: 4483. Total energy = 4954.9977 kcal/mol (4950.4855 without restraints) Performing minimization step: 4484. Total energy = 4954.4705 kcal/mol (4949.9595 without restraints) Performing minimization step: 4485. Total energy = 4953.9435 kcal/mol (4949.4335 without restraints) Performing minimization step: 4486. Total energy = 4953.4164 kcal/mol (4948.9074 without restraints) Performing minimization step: 4487. Total energy = 4952.8889 kcal/mol (4948.3810 without restraints) Performing minimization step: 4488. Total energy = 4952.3614 kcal/mol (4947.8547 without restraints) Performing minimization step: 4489. Total energy = 4951.8339 kcal/mol (4947.3281 without restraints) Performing minimization step: 4490. Total energy = 4951.3063 kcal/mol (4946.8018 without restraints) Performing minimization step: 4491. Total energy = 4950.7788 kcal/mol (4946.2751 without restraints) Performing minimization step: 4492. Total energy = 4950.2510 kcal/mol (4945.7484 without restraints) Performing minimization step: 4493. Total energy = 4949.7235 kcal/mol (4945.2224 without restraints) Performing minimization step: 4494. Total energy = 4949.1957 kcal/mol (4944.6953 without restraints) Performing minimization step: 4495. Total energy = 4948.6675 kcal/mol (4944.1681 without restraints) Performing minimization step: 4496. Total energy = 4948.1392 kcal/mol (4943.6408 without restraints) Performing minimization step: 4497. Total energy = 4947.6107 kcal/mol (4943.1134 without restraints) Performing minimization step: 4498. Total energy = 4947.0818 kcal/mol (4942.5856 without restraints) Performing minimization step: 4499. Total energy = 4946.5535 kcal/mol (4942.0583 without restraints) Performing minimization step: 4500. Total energy = 4946.0246 kcal/mol (4941.5305 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 4945.4961 kcal/mol (4941.0030 without restraints) Performing minimization step: 4502. Total energy = 4944.9675 kcal/mol (4940.4757 without restraints) Performing minimization step: 4503. Total energy = 4944.4387 kcal/mol (4939.9477 without restraints) Performing minimization step: 4504. Total energy = 4943.9093 kcal/mol (4939.4194 without restraints) Performing minimization step: 4505. Total energy = 4943.3796 kcal/mol (4938.8908 without restraints) Performing minimization step: 4506. Total energy = 4942.8502 kcal/mol (4938.3624 without restraints) Performing minimization step: 4507. Total energy = 4942.3206 kcal/mol (4937.8340 without restraints) Performing minimization step: 4508. Total energy = 4941.7911 kcal/mol (4937.3053 without restraints) Performing minimization step: 4509. Total energy = 4941.2612 kcal/mol (4936.7765 without restraints) Performing minimization step: 4510. Total energy = 4940.7315 kcal/mol (4936.2478 without restraints) Performing minimization step: 4511. Total energy = 4940.2012 kcal/mol (4935.7187 without restraints) Performing minimization step: 4512. Total energy = 4939.6712 kcal/mol (4935.1896 without restraints) Performing minimization step: 4513. Total energy = 4939.1411 kcal/mol (4934.6606 without restraints) Performing minimization step: 4514. Total energy = 4938.6105 kcal/mol (4934.1310 without restraints) Performing minimization step: 4515. Total energy = 4938.0796 kcal/mol (4933.6011 without restraints) Performing minimization step: 4516. Total energy = 4937.5487 kcal/mol (4933.0714 without restraints) Performing minimization step: 4517. Total energy = 4937.0177 kcal/mol (4932.5414 without restraints) Performing minimization step: 4518. Total energy = 4936.4865 kcal/mol (4932.0111 without restraints) Performing minimization step: 4519. Total energy = 4935.9553 kcal/mol (4931.4809 without restraints) Performing minimization step: 4520. Total energy = 4935.4236 kcal/mol (4930.9502 without restraints) Performing minimization step: 4521. Total energy = 4934.8917 kcal/mol (4930.4194 without restraints) Performing minimization step: 4522. Total energy = 4934.3597 kcal/mol (4929.8884 without restraints) Performing minimization step: 4523. Total energy = 4933.8275 kcal/mol (4929.3572 without restraints) Performing minimization step: 4524. Total energy = 4933.2951 kcal/mol (4928.8258 without restraints) Performing minimization step: 4525. Total energy = 4932.7625 kcal/mol (4928.2943 without restraints) Performing minimization step: 4526. Total energy = 4932.2298 kcal/mol (4927.7626 without restraints) Performing minimization step: 4527. Total energy = 4931.6969 kcal/mol (4927.2306 without restraints) Performing minimization step: 4528. Total energy = 4931.1639 kcal/mol (4926.6986 without restraints) Performing minimization step: 4529. Total energy = 4930.6304 kcal/mol (4926.1661 without restraints) Performing minimization step: 4530. Total energy = 4930.0972 kcal/mol (4925.6340 without restraints) Performing minimization step: 4531. Total energy = 4929.5636 kcal/mol (4925.1015 without restraints) Performing minimization step: 4532. Total energy = 4929.0299 kcal/mol (4924.5687 without restraints) Performing minimization step: 4533. Total energy = 4928.4958 kcal/mol (4924.0357 without restraints) Performing minimization step: 4534. Total energy = 4927.9616 kcal/mol (4923.5025 without restraints) Performing minimization step: 4535. Total energy = 4927.4272 kcal/mol (4922.9690 without restraints) Performing minimization step: 4536. Total energy = 4926.8930 kcal/mol (4922.4359 without restraints) Performing minimization step: 4537. Total energy = 4926.3584 kcal/mol (4921.9023 without restraints) Performing minimization step: 4538. Total energy = 4925.8234 kcal/mol (4921.3682 without restraints) Performing minimization step: 4539. Total energy = 4925.2884 kcal/mol (4920.8344 without restraints) Performing minimization step: 4540. Total energy = 4924.7531 kcal/mol (4920.3000 without restraints) Performing minimization step: 4541. Total energy = 4924.2178 kcal/mol (4919.7657 without restraints) Performing minimization step: 4542. Total energy = 4923.6820 kcal/mol (4919.2309 without restraints) Performing minimization step: 4543. Total energy = 4923.1462 kcal/mol (4918.6960 without restraints) Performing minimization step: 4544. Total energy = 4922.6099 kcal/mol (4918.1608 without restraints) Performing minimization step: 4545. Total energy = 4922.0737 kcal/mol (4917.6255 without restraints) Performing minimization step: 4546. Total energy = 4921.5370 kcal/mol (4917.0898 without restraints) Performing minimization step: 4547. Total energy = 4921.0001 kcal/mol (4916.5540 without restraints) Performing minimization step: 4548. Total energy = 4920.4631 kcal/mol (4916.0179 without restraints) Performing minimization step: 4549. Total energy = 4919.9258 kcal/mol (4915.4816 without restraints) Performing minimization step: 4550. Total energy = 4919.3889 kcal/mol (4914.9457 without restraints) Performing minimization step: 4551. Total energy = 4918.8510 kcal/mol (4914.4086 without restraints) Performing minimization step: 4552. Total energy = 4918.3136 kcal/mol (4913.8723 without restraints) Performing minimization step: 4553. Total energy = 4917.7754 kcal/mol (4913.3352 without restraints) Performing minimization step: 4554. Total energy = 4917.2379 kcal/mol (4912.7985 without restraints) Performing minimization step: 4555. Total energy = 4916.6992 kcal/mol (4912.2608 without restraints) Performing minimization step: 4556. Total energy = 4916.1606 kcal/mol (4911.7233 without restraints) Performing minimization step: 4557. Total energy = 4915.6219 kcal/mol (4911.1856 without restraints) Performing minimization step: 4558. Total energy = 4915.0827 kcal/mol (4910.6473 without restraints) Performing minimization step: 4559. Total energy = 4914.5431 kcal/mol (4910.1087 without restraints) Performing minimization step: 4560. Total energy = 4914.0034 kcal/mol (4909.5699 without restraints) Performing minimization step: 4561. Total energy = 4913.4635 kcal/mol (4909.0312 without restraints) Performing minimization step: 4562. Total energy = 4912.9236 kcal/mol (4908.4921 without restraints) Performing minimization step: 4563. Total energy = 4912.3831 kcal/mol (4907.9525 without restraints) Performing minimization step: 4564. Total energy = 4911.8425 kcal/mol (4907.4130 without restraints) Performing minimization step: 4565. Total energy = 4911.3017 kcal/mol (4906.8730 without restraints) Performing minimization step: 4566. Total energy = 4910.7609 kcal/mol (4906.3334 without restraints) Performing minimization step: 4567. Total energy = 4910.2199 kcal/mol (4905.7932 without restraints) Performing minimization step: 4568. Total energy = 4909.6782 kcal/mol (4905.2525 without restraints) Performing minimization step: 4569. Total energy = 4909.1365 kcal/mol (4904.7119 without restraints) Performing minimization step: 4570. Total energy = 4908.5947 kcal/mol (4904.1709 without restraints) Performing minimization step: 4571. Total energy = 4908.0525 kcal/mol (4903.6297 without restraints) Performing minimization step: 4572. Total energy = 4907.5100 kcal/mol (4903.0880 without restraints) Performing minimization step: 4573. Total energy = 4906.9672 kcal/mol (4902.5463 without restraints) Performing minimization step: 4574. Total energy = 4906.4243 kcal/mol (4902.0043 without restraints) Performing minimization step: 4575. Total energy = 4905.8812 kcal/mol (4901.4622 without restraints) Performing minimization step: 4576. Total energy = 4905.3379 kcal/mol (4900.9198 without restraints) Performing minimization step: 4577. Total energy = 4904.7944 kcal/mol (4900.3773 without restraints) Performing minimization step: 4578. Total energy = 4904.2506 kcal/mol (4899.8345 without restraints) Performing minimization step: 4579. Total energy = 4903.7069 kcal/mol (4899.2917 without restraints) Performing minimization step: 4580. Total energy = 4903.1628 kcal/mol (4898.7487 without restraints) Performing minimization step: 4581. Total energy = 4902.6185 kcal/mol (4898.2052 without restraints) Performing minimization step: 4582. Total energy = 4902.0738 kcal/mol (4897.6614 without restraints) Performing minimization step: 4583. Total energy = 4901.5289 kcal/mol (4897.1174 without restraints) Performing minimization step: 4584. Total energy = 4900.9844 kcal/mol (4896.5740 without restraints) Performing minimization step: 4585. Total energy = 4900.4394 kcal/mol (4896.0299 without restraints) Performing minimization step: 4586. Total energy = 4899.8939 kcal/mol (4895.4853 without restraints) Performing minimization step: 4587. Total energy = 4899.3482 kcal/mol (4894.9406 without restraints) Performing minimization step: 4588. Total energy = 4898.8023 kcal/mol (4894.3956 without restraints) Performing minimization step: 4589. Total energy = 4898.2566 kcal/mol (4893.8508 without restraints) Performing minimization step: 4590. Total energy = 4897.7102 kcal/mol (4893.3054 without restraints) Performing minimization step: 4591. Total energy = 4897.1640 kcal/mol (4892.7603 without restraints) Performing minimization step: 4592. Total energy = 4896.6174 kcal/mol (4892.2144 without restraints) Performing minimization step: 4593. Total energy = 4896.0702 kcal/mol (4891.6680 without restraints) Performing minimization step: 4594. Total energy = 4895.5228 kcal/mol (4891.1218 without restraints) Performing minimization step: 4595. Total energy = 4894.9756 kcal/mol (4890.5755 without restraints) Performing minimization step: 4596. Total energy = 4894.4280 kcal/mol (4890.0288 without restraints) Performing minimization step: 4597. Total energy = 4893.8801 kcal/mol (4889.4819 without restraints) Performing minimization step: 4598. Total energy = 4893.3319 kcal/mol (4888.9346 without restraints) Performing minimization step: 4599. Total energy = 4892.7837 kcal/mol (4888.3873 without restraints) Performing minimization step: 4600. Total energy = 4892.2356 kcal/mol (4887.8405 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 4891.6875 kcal/mol (4887.2930 without restraints) Performing minimization step: 4602. Total energy = 4891.1387 kcal/mol (4886.7451 without restraints) Performing minimization step: 4603. Total energy = 4890.5898 kcal/mol (4886.1971 without restraints) Performing minimization step: 4604. Total energy = 4890.0406 kcal/mol (4885.6489 without restraints) Performing minimization step: 4605. Total energy = 4889.4914 kcal/mol (4885.1006 without restraints) Performing minimization step: 4606. Total energy = 4888.9419 kcal/mol (4884.5520 without restraints) Performing minimization step: 4607. Total energy = 4888.3922 kcal/mol (4884.0033 without restraints) Performing minimization step: 4608. Total energy = 4887.8428 kcal/mol (4883.4549 without restraints) Performing minimization step: 4609. Total energy = 4887.2931 kcal/mol (4882.9061 without restraints) Performing minimization step: 4610. Total energy = 4886.7432 kcal/mol (4882.3570 without restraints) Performing minimization step: 4611. Total energy = 4886.1931 kcal/mol (4881.8078 without restraints) Performing minimization step: 4612. Total energy = 4885.6426 kcal/mol (4881.2583 without restraints) Performing minimization step: 4613. Total energy = 4885.0919 kcal/mol (4880.7085 without restraints) Performing minimization step: 4614. Total energy = 4884.5411 kcal/mol (4880.1586 without restraints) Performing minimization step: 4615. Total energy = 4883.9904 kcal/mol (4879.6088 without restraints) Performing minimization step: 4616. Total energy = 4883.4393 kcal/mol (4879.0587 without restraints) Performing minimization step: 4617. Total energy = 4882.8880 kcal/mol (4878.5083 without restraints) Performing minimization step: 4618. Total energy = 4882.3366 kcal/mol (4877.9578 without restraints) Performing minimization step: 4619. Total energy = 4881.7854 kcal/mol (4877.4076 without restraints) Performing minimization step: 4620. Total energy = 4881.2340 kcal/mol (4876.8570 without restraints) Performing minimization step: 4621. Total energy = 4880.6820 kcal/mol (4876.3060 without restraints) Performing minimization step: 4622. Total energy = 4880.1300 kcal/mol (4875.7549 without restraints) Performing minimization step: 4623. Total energy = 4879.5782 kcal/mol (4875.2040 without restraints) Performing minimization step: 4624. Total energy = 4879.0269 kcal/mol (4874.6536 without restraints) Performing minimization step: 4625. Total energy = 4878.4745 kcal/mol (4874.1020 without restraints) Performing minimization step: 4626. Total energy = 4877.9223 kcal/mol (4873.5509 without restraints) Performing minimization step: 4627. Total energy = 4877.3702 kcal/mol (4872.9997 without restraints) Performing minimization step: 4628. Total energy = 4876.8175 kcal/mol (4872.4479 without restraints) Performing minimization step: 4629. Total energy = 4876.2651 kcal/mol (4871.8965 without restraints) Performing minimization step: 4630. Total energy = 4875.7124 kcal/mol (4871.3446 without restraints) Performing minimization step: 4631. Total energy = 4875.1598 kcal/mol (4870.7929 without restraints) Performing minimization step: 4632. Total energy = 4874.6071 kcal/mol (4870.2411 without restraints) Performing minimization step: 4633. Total energy = 4874.0542 kcal/mol (4869.6892 without restraints) Performing minimization step: 4634. Total energy = 4873.5011 kcal/mol (4869.1370 without restraints) Performing minimization step: 4635. Total energy = 4872.9480 kcal/mol (4868.5848 without restraints) Performing minimization step: 4636. Total energy = 4872.3946 kcal/mol (4868.0323 without restraints) Performing minimization step: 4637. Total energy = 4871.8413 kcal/mol (4867.4800 without restraints) Performing minimization step: 4638. Total energy = 4871.2882 kcal/mol (4866.9278 without restraints) Performing minimization step: 4639. Total energy = 4870.7350 kcal/mol (4866.3755 without restraints) Performing minimization step: 4640. Total energy = 4870.1817 kcal/mol (4865.8231 without restraints) Performing minimization step: 4641. Total energy = 4869.6287 kcal/mol (4865.2710 without restraints) Performing minimization step: 4642. Total energy = 4869.0753 kcal/mol (4864.7185 without restraints) Performing minimization step: 4643. Total energy = 4868.5218 kcal/mol (4864.1659 without restraints) Performing minimization step: 4644. Total energy = 4867.9684 kcal/mol (4863.6136 without restraints) Performing minimization step: 4645. Total energy = 4867.4154 kcal/mol (4863.0614 without restraints) Performing minimization step: 4646. Total energy = 4866.8617 kcal/mol (4862.5086 without restraints) Performing minimization step: 4647. Total energy = 4866.3082 kcal/mol (4861.9561 without restraints) Performing minimization step: 4648. Total energy = 4865.7552 kcal/mol (4861.4039 without restraints) Performing minimization step: 4649. Total energy = 4865.2019 kcal/mol (4860.8515 without restraints) Performing minimization step: 4650. Total energy = 4864.6485 kcal/mol (4860.2990 without restraints) Performing minimization step: 4651. Total energy = 4864.0956 kcal/mol (4859.7472 without restraints) Performing minimization step: 4652. Total energy = 4863.5427 kcal/mol (4859.1951 without restraints) Performing minimization step: 4653. Total energy = 4862.9894 kcal/mol (4858.6427 without restraints) Performing minimization step: 4654. Total energy = 4862.4362 kcal/mol (4858.0904 without restraints) Performing minimization step: 4655. Total energy = 4861.8832 kcal/mol (4857.5383 without restraints) Performing minimization step: 4656. Total energy = 4861.3302 kcal/mol (4856.9863 without restraints) Performing minimization step: 4657. Total energy = 4860.7774 kcal/mol (4856.4344 without restraints) Performing minimization step: 4658. Total energy = 4860.2243 kcal/mol (4855.8823 without restraints) Performing minimization step: 4659. Total energy = 4859.6715 kcal/mol (4855.3303 without restraints) Performing minimization step: 4660. Total energy = 4859.1191 kcal/mol (4854.7789 without restraints) Performing minimization step: 4661. Total energy = 4858.5664 kcal/mol (4854.2271 without restraints) Performing minimization step: 4662. Total energy = 4858.0140 kcal/mol (4853.6755 without restraints) Performing minimization step: 4663. Total energy = 4857.4616 kcal/mol (4853.1241 without restraints) Performing minimization step: 4664. Total energy = 4856.9093 kcal/mol (4852.5728 without restraints) Performing minimization step: 4665. Total energy = 4856.3576 kcal/mol (4852.0220 without restraints) Performing minimization step: 4666. Total energy = 4855.8064 kcal/mol (4851.4717 without restraints) Performing minimization step: 4667. Total energy = 4855.2545 kcal/mol (4850.9207 without restraints) Performing minimization step: 4668. Total energy = 4854.7032 kcal/mol (4850.3702 without restraints) Performing minimization step: 4669. Total energy = 4854.1517 kcal/mol (4849.8197 without restraints) Performing minimization step: 4670. Total energy = 4853.6005 kcal/mol (4849.2695 without restraints) Performing minimization step: 4671. Total energy = 4853.0495 kcal/mol (4848.7194 without restraints) Performing minimization step: 4672. Total energy = 4852.4985 kcal/mol (4848.1694 without restraints) Performing minimization step: 4673. Total energy = 4851.9484 kcal/mol (4847.6202 without restraints) Performing minimization step: 4674. Total energy = 4851.3979 kcal/mol (4847.0706 without restraints) Performing minimization step: 4675. Total energy = 4850.8478 kcal/mol (4846.5215 without restraints) Performing minimization step: 4676. Total energy = 4850.2981 kcal/mol (4845.9726 without restraints) Performing minimization step: 4677. Total energy = 4849.7481 kcal/mol (4845.4236 without restraints) Performing minimization step: 4678. Total energy = 4849.1986 kcal/mol (4844.8751 without restraints) Performing minimization step: 4679. Total energy = 4848.6492 kcal/mol (4844.3266 without restraints) Performing minimization step: 4680. Total energy = 4848.1004 kcal/mol (4843.7789 without restraints) Performing minimization step: 4681. Total energy = 4847.5518 kcal/mol (4843.2311 without restraints) Performing minimization step: 4682. Total energy = 4847.0035 kcal/mol (4842.6837 without restraints) Performing minimization step: 4683. Total energy = 4846.4551 kcal/mol (4842.1362 without restraints) Performing minimization step: 4684. Total energy = 4845.9068 kcal/mol (4841.5889 without restraints) Performing minimization step: 4685. Total energy = 4845.3591 kcal/mol (4841.0421 without restraints) Performing minimization step: 4686. Total energy = 4844.8112 kcal/mol (4840.4951 without restraints) Performing minimization step: 4687. Total energy = 4844.2640 kcal/mol (4839.9489 without restraints) Performing minimization step: 4688. Total energy = 4843.7175 kcal/mol (4839.4035 without restraints) Performing minimization step: 4689. Total energy = 4843.1718 kcal/mol (4838.8588 without restraints) Performing minimization step: 4690. Total energy = 4842.6262 kcal/mol (4838.3139 without restraints) Performing minimization step: 4691. Total energy = 4842.0804 kcal/mol (4837.7691 without restraints) Performing minimization step: 4692. Total energy = 4841.5359 kcal/mol (4837.2255 without restraints) Performing minimization step: 4693. Total energy = 4840.9910 kcal/mol (4836.6815 without restraints) Performing minimization step: 4694. Total energy = 4840.4465 kcal/mol (4836.1380 without restraints) Performing minimization step: 4695. Total energy = 4839.9026 kcal/mol (4835.5952 without restraints) Performing minimization step: 4696. Total energy = 4839.3589 kcal/mol (4835.0523 without restraints) Performing minimization step: 4697. Total energy = 4838.8155 kcal/mol (4834.5099 without restraints) Performing minimization step: 4698. Total energy = 4838.2728 kcal/mol (4833.9681 without restraints) Performing minimization step: 4699. Total energy = 4837.7304 kcal/mol (4833.4267 without restraints) Performing minimization step: 4700. Total energy = 4837.1886 kcal/mol (4832.8859 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 4836.6471 kcal/mol (4832.3453 without restraints) Performing minimization step: 4702. Total energy = 4836.1059 kcal/mol (4831.8051 without restraints) Performing minimization step: 4703. Total energy = 4835.5649 kcal/mol (4831.2650 without restraints) Performing minimization step: 4704. Total energy = 4835.0250 kcal/mol (4830.7261 without restraints) Performing minimization step: 4705. Total energy = 4834.4853 kcal/mol (4830.1873 without restraints) Performing minimization step: 4706. Total energy = 4833.9461 kcal/mol (4829.6491 without restraints) Performing minimization step: 4707. Total energy = 4833.4074 kcal/mol (4829.1113 without restraints) Performing minimization step: 4708. Total energy = 4832.8692 kcal/mol (4828.5741 without restraints) Performing minimization step: 4709. Total energy = 4832.3317 kcal/mol (4828.0376 without restraints) Performing minimization step: 4710. Total energy = 4831.7946 kcal/mol (4827.5014 without restraints) Performing minimization step: 4711. Total energy = 4831.2579 kcal/mol (4826.9657 without restraints) Performing minimization step: 4712. Total energy = 4830.7222 kcal/mol (4826.4311 without restraints) Performing minimization step: 4713. Total energy = 4830.1868 kcal/mol (4825.8965 without restraints) Performing minimization step: 4714. Total energy = 4829.6516 kcal/mol (4825.3624 without restraints) Performing minimization step: 4715. Total energy = 4829.1175 kcal/mol (4824.8293 without restraints) Performing minimization step: 4716. Total energy = 4828.5840 kcal/mol (4824.2969 without restraints) Performing minimization step: 4717. Total energy = 4828.0510 kcal/mol (4823.7647 without restraints) Performing minimization step: 4718. Total energy = 4827.5185 kcal/mol (4823.2331 without restraints) Performing minimization step: 4719. Total energy = 4826.9868 kcal/mol (4822.7025 without restraints) Performing minimization step: 4720. Total energy = 4826.4555 kcal/mol (4822.1721 without restraints) Performing minimization step: 4721. Total energy = 4825.9248 kcal/mol (4821.6424 without restraints) Performing minimization step: 4722. Total energy = 4825.3949 kcal/mol (4821.1135 without restraints) Performing minimization step: 4723. Total energy = 4824.8658 kcal/mol (4820.5854 without restraints) Performing minimization step: 4724. Total energy = 4824.3373 kcal/mol (4820.0579 without restraints) Performing minimization step: 4725. Total energy = 4823.8094 kcal/mol (4819.5309 without restraints) Performing minimization step: 4726. Total energy = 4823.2822 kcal/mol (4819.0048 without restraints) Performing minimization step: 4727. Total energy = 4822.7555 kcal/mol (4818.4791 without restraints) Performing minimization step: 4728. Total energy = 4822.2296 kcal/mol (4817.9540 without restraints) Performing minimization step: 4729. Total energy = 4821.7045 kcal/mol (4817.4301 without restraints) Performing minimization step: 4730. Total energy = 4821.1799 kcal/mol (4816.9064 without restraints) Performing minimization step: 4731. Total energy = 4820.6560 kcal/mol (4816.3835 without restraints) Performing minimization step: 4732. Total energy = 4820.1327 kcal/mol (4815.8613 without restraints) Performing minimization step: 4733. Total energy = 4819.6105 kcal/mol (4815.3400 without restraints) Performing minimization step: 4734. Total energy = 4819.0889 kcal/mol (4814.8195 without restraints) Performing minimization step: 4735. Total energy = 4818.5683 kcal/mol (4814.2999 without restraints) Performing minimization step: 4736. Total energy = 4818.0482 kcal/mol (4813.7808 without restraints) Performing minimization step: 4737. Total energy = 4817.5287 kcal/mol (4813.2623 without restraints) Performing minimization step: 4738. Total energy = 4817.0102 kcal/mol (4812.7448 without restraints) Performing minimization step: 4739. Total energy = 4816.4925 kcal/mol (4812.2282 without restraints) Performing minimization step: 4740. Total energy = 4815.9757 kcal/mol (4811.7124 without restraints) Performing minimization step: 4741. Total energy = 4815.4595 kcal/mol (4811.1971 without restraints) Performing minimization step: 4742. Total energy = 4814.9439 kcal/mol (4810.6826 without restraints) Performing minimization step: 4743. Total energy = 4814.4291 kcal/mol (4810.1688 without restraints) Performing minimization step: 4744. Total energy = 4813.9152 kcal/mol (4809.6559 without restraints) Performing minimization step: 4745. Total energy = 4813.4024 kcal/mol (4809.1442 without restraints) Performing minimization step: 4746. Total energy = 4812.8906 kcal/mol (4808.6333 without restraints) Performing minimization step: 4747. Total energy = 4812.3792 kcal/mol (4808.1231 without restraints) Performing minimization step: 4748. Total energy = 4811.8683 kcal/mol (4807.6130 without restraints) Performing minimization step: 4749. Total energy = 4811.3583 kcal/mol (4807.1041 without restraints) Performing minimization step: 4750. Total energy = 4810.8489 kcal/mol (4806.5958 without restraints) Performing minimization step: 4751. Total energy = 4810.3406 kcal/mol (4806.0885 without restraints) Performing minimization step: 4752. Total energy = 4809.8332 kcal/mol (4805.5820 without restraints) Performing minimization step: 4753. Total energy = 4809.3264 kcal/mol (4805.0764 without restraints) Performing minimization step: 4754. Total energy = 4808.8206 kcal/mol (4804.5715 without restraints) Performing minimization step: 4755. Total energy = 4808.3153 kcal/mol (4804.0673 without restraints) Performing minimization step: 4756. Total energy = 4807.8111 kcal/mol (4803.5641 without restraints) Performing minimization step: 4757. Total energy = 4807.3077 kcal/mol (4803.0618 without restraints) Performing minimization step: 4758. Total energy = 4806.8051 kcal/mol (4802.5603 without restraints) Performing minimization step: 4759. Total energy = 4806.3034 kcal/mol (4802.0597 without restraints) Performing minimization step: 4760. Total energy = 4805.8025 kcal/mol (4801.5597 without restraints) Performing minimization step: 4761. Total energy = 4805.3024 kcal/mol (4801.0606 without restraints) Performing minimization step: 4762. Total energy = 4804.8033 kcal/mol (4800.5625 without restraints) Performing minimization step: 4763. Total energy = 4804.3050 kcal/mol (4800.0654 without restraints) Performing minimization step: 4764. Total energy = 4803.8077 kcal/mol (4799.5689 without restraints) Performing minimization step: 4765. Total energy = 4803.3110 kcal/mol (4799.0733 without restraints) Performing minimization step: 4766. Total energy = 4802.8153 kcal/mol (4798.5789 without restraints) Performing minimization step: 4767. Total energy = 4802.3201 kcal/mol (4798.0846 without restraints) Performing minimization step: 4768. Total energy = 4801.8263 kcal/mol (4797.5918 without restraints) Performing minimization step: 4769. Total energy = 4801.3335 kcal/mol (4797.1001 without restraints) Performing minimization step: 4770. Total energy = 4800.8410 kcal/mol (4796.6086 without restraints) Performing minimization step: 4771. Total energy = 4800.3493 kcal/mol (4796.1180 without restraints) Performing minimization step: 4772. Total energy = 4799.8586 kcal/mol (4795.6283 without restraints) Performing minimization step: 4773. Total energy = 4799.3686 kcal/mol (4795.1395 without restraints) Performing minimization step: 4774. Total energy = 4798.8796 kcal/mol (4794.6515 without restraints) Performing minimization step: 4775. Total energy = 4798.3919 kcal/mol (4794.1648 without restraints) Performing minimization step: 4776. Total energy = 4797.9046 kcal/mol (4793.6786 without restraints) Performing minimization step: 4777. Total energy = 4797.4181 kcal/mol (4793.1932 without restraints) Performing minimization step: 4778. Total energy = 4796.9329 kcal/mol (4792.7090 without restraints) Performing minimization step: 4779. Total energy = 4796.4485 kcal/mol (4792.2257 without restraints) Performing minimization step: 4780. Total energy = 4795.9648 kcal/mol (4791.7431 without restraints) Performing minimization step: 4781. Total energy = 4795.4818 kcal/mol (4791.2611 without restraints) Performing minimization step: 4782. Total energy = 4794.9997 kcal/mol (4790.7800 without restraints) Performing minimization step: 4783. Total energy = 4794.5187 kcal/mol (4790.3002 without restraints) Performing minimization step: 4784. Total energy = 4794.0383 kcal/mol (4789.8208 without restraints) Performing minimization step: 4785. Total energy = 4793.5591 kcal/mol (4789.3429 without restraints) Performing minimization step: 4786. Total energy = 4793.0814 kcal/mol (4788.8661 without restraints) Performing minimization step: 4787. Total energy = 4792.6035 kcal/mol (4788.3894 without restraints) Performing minimization step: 4788. Total energy = 4792.1269 kcal/mol (4787.9136 without restraints) Performing minimization step: 4789. Total energy = 4791.6506 kcal/mol (4787.4384 without restraints) Performing minimization step: 4790. Total energy = 4791.1753 kcal/mol (4786.9644 without restraints) Performing minimization step: 4791. Total energy = 4790.7009 kcal/mol (4786.4909 without restraints) Performing minimization step: 4792. Total energy = 4790.2275 kcal/mol (4786.0187 without restraints) Performing minimization step: 4793. Total energy = 4789.7548 kcal/mol (4785.5469 without restraints) Performing minimization step: 4794. Total energy = 4789.2830 kcal/mol (4785.0762 without restraints) Performing minimization step: 4795. Total energy = 4788.8123 kcal/mol (4784.6065 without restraints) Performing minimization step: 4796. Total energy = 4788.3423 kcal/mol (4784.1376 without restraints) Performing minimization step: 4797. Total energy = 4787.8734 kcal/mol (4783.6698 without restraints) Performing minimization step: 4798. Total energy = 4787.4049 kcal/mol (4783.2024 without restraints) Performing minimization step: 4799. Total energy = 4786.9374 kcal/mol (4782.7359 without restraints) Performing minimization step: 4800. Total energy = 4786.4703 kcal/mol (4782.2699 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 4786.0042 kcal/mol (4781.8050 without restraints) Performing minimization step: 4802. Total energy = 4785.5386 kcal/mol (4781.3405 without restraints) Performing minimization step: 4803. Total energy = 4785.0742 kcal/mol (4780.8773 without restraints) Performing minimization step: 4804. Total energy = 4784.6105 kcal/mol (4780.4145 without restraints) Performing minimization step: 4805. Total energy = 4784.1479 kcal/mol (4779.9530 without restraints) Performing minimization step: 4806. Total energy = 4783.6855 kcal/mol (4779.4916 without restraints) Performing minimization step: 4807. Total energy = 4783.2238 kcal/mol (4779.0310 without restraints) Performing minimization step: 4808. Total energy = 4782.7631 kcal/mol (4778.5714 without restraints) Performing minimization step: 4809. Total energy = 4782.3033 kcal/mol (4778.1128 without restraints) Performing minimization step: 4810. Total energy = 4781.8441 kcal/mol (4777.6546 without restraints) Performing minimization step: 4811. Total energy = 4781.3862 kcal/mol (4777.1978 without restraints) Performing minimization step: 4812. Total energy = 4780.9287 kcal/mol (4776.7413 without restraints) Performing minimization step: 4813. Total energy = 4780.4720 kcal/mol (4776.2857 without restraints) Performing minimization step: 4814. Total energy = 4780.0164 kcal/mol (4775.8312 without restraints) Performing minimization step: 4815. Total energy = 4779.5613 kcal/mol (4775.3772 without restraints) Performing minimization step: 4816. Total energy = 4779.1072 kcal/mol (4774.9242 without restraints) Performing minimization step: 4817. Total energy = 4778.6534 kcal/mol (4774.4715 without restraints) Performing minimization step: 4818. Total energy = 4778.2003 kcal/mol (4774.0195 without restraints) Performing minimization step: 4819. Total energy = 4777.7481 kcal/mol (4773.5685 without restraints) Performing minimization step: 4820. Total energy = 4777.2968 kcal/mol (4773.1182 without restraints) Performing minimization step: 4821. Total energy = 4776.8459 kcal/mol (4772.6684 without restraints) Performing minimization step: 4822. Total energy = 4776.3958 kcal/mol (4772.2194 without restraints) Performing minimization step: 4823. Total energy = 4775.9464 kcal/mol (4771.7710 without restraints) Performing minimization step: 4824. Total energy = 4775.4976 kcal/mol (4771.3234 without restraints) Performing minimization step: 4825. Total energy = 4775.0497 kcal/mol (4770.8767 without restraints) Performing minimization step: 4826. Total energy = 4774.6026 kcal/mol (4770.4305 without restraints) Performing minimization step: 4827. Total energy = 4774.1558 kcal/mol (4769.9848 without restraints) Performing minimization step: 4828. Total energy = 4773.7102 kcal/mol (4769.5403 without restraints) Performing minimization step: 4829. Total energy = 4773.2652 kcal/mol (4769.0965 without restraints) Performing minimization step: 4830. Total energy = 4772.8208 kcal/mol (4768.6531 without restraints) Performing minimization step: 4831. Total energy = 4772.3774 kcal/mol (4768.2107 without restraints) Performing minimization step: 4832. Total energy = 4771.9342 kcal/mol (4767.7687 without restraints) Performing minimization step: 4833. Total energy = 4771.4920 kcal/mol (4767.3277 without restraints) Performing minimization step: 4834. Total energy = 4771.0504 kcal/mol (4766.8871 without restraints) Performing minimization step: 4835. Total energy = 4770.6093 kcal/mol (4766.4471 without restraints) Performing minimization step: 4836. Total energy = 4770.1690 kcal/mol (4766.0078 without restraints) Performing minimization step: 4837. Total energy = 4769.7294 kcal/mol (4765.5693 without restraints) Performing minimization step: 4838. Total energy = 4769.2908 kcal/mol (4765.1318 without restraints) Performing minimization step: 4839. Total energy = 4768.8523 kcal/mol (4764.6944 without restraints) Performing minimization step: 4840. Total energy = 4768.4144 kcal/mol (4764.2576 without restraints) Performing minimization step: 4841. Total energy = 4767.9773 kcal/mol (4763.8216 without restraints) Performing minimization step: 4842. Total energy = 4767.5411 kcal/mol (4763.3865 without restraints) Performing minimization step: 4843. Total energy = 4767.1054 kcal/mol (4762.9519 without restraints) Performing minimization step: 4844. Total energy = 4766.6703 kcal/mol (4762.5180 without restraints) Performing minimization step: 4845. Total energy = 4766.2355 kcal/mol (4762.0844 without restraints) Performing minimization step: 4846. Total energy = 4765.8016 kcal/mol (4761.6515 without restraints) Performing minimization step: 4847. Total energy = 4765.3681 kcal/mol (4761.2190 without restraints) Performing minimization step: 4848. Total energy = 4764.9354 kcal/mol (4760.7873 without restraints) Performing minimization step: 4849. Total energy = 4764.5030 kcal/mol (4760.3561 without restraints) Performing minimization step: 4850. Total energy = 4764.0720 kcal/mol (4759.9263 without restraints) Performing minimization step: 4851. Total energy = 4763.6412 kcal/mol (4759.4965 without restraints) Performing minimization step: 4852. Total energy = 4763.2106 kcal/mol (4759.0670 without restraints) Performing minimization step: 4853. Total energy = 4762.7807 kcal/mol (4758.6382 without restraints) Performing minimization step: 4854. Total energy = 4762.3513 kcal/mol (4758.2099 without restraints) Performing minimization step: 4855. Total energy = 4761.9227 kcal/mol (4757.7824 without restraints) Performing minimization step: 4856. Total energy = 4761.4948 kcal/mol (4757.3556 without restraints) Performing minimization step: 4857. Total energy = 4761.0673 kcal/mol (4756.9292 without restraints) Performing minimization step: 4858. Total energy = 4760.6407 kcal/mol (4756.5041 without restraints) Performing minimization step: 4859. Total energy = 4760.2145 kcal/mol (4756.0786 without restraints) Performing minimization step: 4860. Total energy = 4759.7884 kcal/mol (4755.6536 without restraints) Performing minimization step: 4861. Total energy = 4759.3627 kcal/mol (4755.2290 without restraints) Performing minimization step: 4862. Total energy = 4758.9380 kcal/mol (4754.8054 without restraints) Performing minimization step: 4863. Total energy = 4758.5141 kcal/mol (4754.3826 without restraints) Performing minimization step: 4864. Total energy = 4758.0903 kcal/mol (4753.9599 without restraints) Performing minimization step: 4865. Total energy = 4757.6671 kcal/mol (4753.5378 without restraints) Performing minimization step: 4866. Total energy = 4757.2445 kcal/mol (4753.1163 without restraints) Performing minimization step: 4867. Total energy = 4756.8222 kcal/mol (4752.6951 without restraints) Performing minimization step: 4868. Total energy = 4756.4005 kcal/mol (4752.2745 without restraints) Performing minimization step: 4869. Total energy = 4755.9797 kcal/mol (4751.8548 without restraints) Performing minimization step: 4870. Total energy = 4755.5589 kcal/mol (4751.4351 without restraints) Performing minimization step: 4871. Total energy = 4755.1392 kcal/mol (4751.0165 without restraints) Performing minimization step: 4872. Total energy = 4754.7197 kcal/mol (4750.5981 without restraints) Performing minimization step: 4873. Total energy = 4754.3001 kcal/mol (4750.1797 without restraints) Performing minimization step: 4874. Total energy = 4753.8819 kcal/mol (4749.7624 without restraints) Performing minimization step: 4875. Total energy = 4753.4643 kcal/mol (4749.3460 without restraints) Performing minimization step: 4876. Total energy = 4753.0470 kcal/mol (4748.9298 without restraints) Performing minimization step: 4877. Total energy = 4752.6300 kcal/mol (4748.5139 without restraints) Performing minimization step: 4878. Total energy = 4752.2134 kcal/mol (4748.0984 without restraints) Performing minimization step: 4879. Total energy = 4751.7972 kcal/mol (4747.6833 without restraints) Performing minimization step: 4880. Total energy = 4751.3820 kcal/mol (4747.2692 without restraints) Performing minimization step: 4881. Total energy = 4750.9668 kcal/mol (4746.8553 without restraints) Performing minimization step: 4882. Total energy = 4750.5520 kcal/mol (4746.4415 without restraints) Performing minimization step: 4883. Total energy = 4750.1378 kcal/mol (4746.0284 without restraints) Performing minimization step: 4884. Total energy = 4749.7241 kcal/mol (4745.6158 without restraints) Performing minimization step: 4885. Total energy = 4749.3107 kcal/mol (4745.2033 without restraints) Performing minimization step: 4886. Total energy = 4748.8976 kcal/mol (4744.7914 without restraints) Performing minimization step: 4887. Total energy = 4748.4850 kcal/mol (4744.3799 without restraints) Performing minimization step: 4888. Total energy = 4748.0732 kcal/mol (4743.9691 without restraints) Performing minimization step: 4889. Total energy = 4747.6619 kcal/mol (4743.5590 without restraints) Performing minimization step: 4890. Total energy = 4747.2506 kcal/mol (4743.1488 without restraints) Performing minimization step: 4891. Total energy = 4746.8398 kcal/mol (4742.7391 without restraints) Performing minimization step: 4892. Total energy = 4746.4294 kcal/mol (4742.3298 without restraints) Performing minimization step: 4893. Total energy = 4746.0195 kcal/mol (4741.9210 without restraints) Performing minimization step: 4894. Total energy = 4745.6101 kcal/mol (4741.5127 without restraints) Performing minimization step: 4895. Total energy = 4745.2013 kcal/mol (4741.1051 without restraints) Performing minimization step: 4896. Total energy = 4744.7925 kcal/mol (4740.6973 without restraints) Performing minimization step: 4897. Total energy = 4744.3848 kcal/mol (4740.2908 without restraints) Performing minimization step: 4898. Total energy = 4743.9771 kcal/mol (4739.8841 without restraints) Performing minimization step: 4899. Total energy = 4743.5700 kcal/mol (4739.4781 without restraints) Performing minimization step: 4900. Total energy = 4743.1633 kcal/mol (4739.0726 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 4742.7568 kcal/mol (4738.6671 without restraints) Performing minimization step: 4902. Total energy = 4742.3505 kcal/mol (4738.2619 without restraints) Performing minimization step: 4903. Total energy = 4741.9446 kcal/mol (4737.8571 without restraints) Performing minimization step: 4904. Total energy = 4741.5396 kcal/mol (4737.4533 without restraints) Performing minimization step: 4905. Total energy = 4741.1347 kcal/mol (4737.0494 without restraints) Performing minimization step: 4906. Total energy = 4740.7312 kcal/mol (4736.6470 without restraints) Performing minimization step: 4907. Total energy = 4740.3271 kcal/mol (4736.2442 without restraints) Performing minimization step: 4908. Total energy = 4739.9235 kcal/mol (4735.8416 without restraints) Performing minimization step: 4909. Total energy = 4739.5203 kcal/mol (4735.4394 without restraints) Performing minimization step: 4910. Total energy = 4739.1173 kcal/mol (4735.0376 without restraints) Performing minimization step: 4911. Total energy = 4738.7150 kcal/mol (4734.6362 without restraints) Performing minimization step: 4912. Total energy = 4738.3131 kcal/mol (4734.2355 without restraints) Performing minimization step: 4913. Total energy = 4737.9114 kcal/mol (4733.8350 without restraints) Performing minimization step: 4914. Total energy = 4737.5101 kcal/mol (4733.4347 without restraints) Performing minimization step: 4915. Total energy = 4737.1100 kcal/mol (4733.0361 without restraints) Performing minimization step: 4916. Total energy = 4736.7097 kcal/mol (4732.6365 without restraints) Performing minimization step: 4917. Total energy = 4736.3097 kcal/mol (4732.2376 without restraints) Performing minimization step: 4918. Total energy = 4735.9100 kcal/mol (4731.8390 without restraints) Performing minimization step: 4919. Total energy = 4735.5104 kcal/mol (4731.4405 without restraints) Performing minimization step: 4920. Total energy = 4735.1112 kcal/mol (4731.0425 without restraints) Performing minimization step: 4921. Total energy = 4734.7125 kcal/mol (4730.6448 without restraints) Performing minimization step: 4922. Total energy = 4734.3141 kcal/mol (4730.2475 without restraints) Performing minimization step: 4923. Total energy = 4733.9160 kcal/mol (4729.8506 without restraints) Performing minimization step: 4924. Total energy = 4733.5183 kcal/mol (4729.4539 without restraints) Performing minimization step: 4925. Total energy = 4733.1210 kcal/mol (4729.0578 without restraints) Performing minimization step: 4926. Total energy = 4732.7244 kcal/mol (4728.6623 without restraints) Performing minimization step: 4927. Total energy = 4732.3278 kcal/mol (4728.2668 without restraints) Performing minimization step: 4928. Total energy = 4731.9327 kcal/mol (4727.8728 without restraints) Performing minimization step: 4929. Total energy = 4731.5368 kcal/mol (4727.4779 without restraints) Performing minimization step: 4930. Total energy = 4731.1414 kcal/mol (4727.0836 without restraints) Performing minimization step: 4931. Total energy = 4730.7463 kcal/mol (4726.6898 without restraints) Performing minimization step: 4932. Total energy = 4730.3515 kcal/mol (4726.2960 without restraints) Performing minimization step: 4933. Total energy = 4729.9570 kcal/mol (4725.9026 without restraints) Performing minimization step: 4934. Total energy = 4729.5632 kcal/mol (4725.5100 without restraints) Performing minimization step: 4935. Total energy = 4729.1700 kcal/mol (4725.1178 without restraints) Performing minimization step: 4936. Total energy = 4728.7764 kcal/mol (4724.7251 without restraints) Performing minimization step: 4937. Total energy = 4728.3832 kcal/mol (4724.3333 without restraints) Performing minimization step: 4938. Total energy = 4727.9908 kcal/mol (4723.9422 without restraints) Performing minimization step: 4939. Total energy = 4727.5990 kcal/mol (4723.5512 without restraints) Performing minimization step: 4940. Total energy = 4727.2069 kcal/mol (4723.1599 without restraints) Performing minimization step: 4941. Total energy = 4726.8148 kcal/mol (4722.7692 without restraints) Performing minimization step: 4942. Total energy = 4726.4235 kcal/mol (4722.3790 without restraints) Performing minimization step: 4943. Total energy = 4726.0325 kcal/mol (4721.9891 without restraints) Performing minimization step: 4944. Total energy = 4725.6419 kcal/mol (4721.5996 without restraints) Performing minimization step: 4945. Total energy = 4725.2516 kcal/mol (4721.2104 without restraints) Performing minimization step: 4946. Total energy = 4724.8617 kcal/mol (4720.8215 without restraints) Performing minimization step: 4947. Total energy = 4724.4721 kcal/mol (4720.4331 without restraints) Performing minimization step: 4948. Total energy = 4724.0829 kcal/mol (4720.0450 without restraints) Performing minimization step: 4949. Total energy = 4723.6939 kcal/mol (4719.6571 without restraints) Performing minimization step: 4950. Total energy = 4723.3052 kcal/mol (4719.2695 without restraints) Performing minimization step: 4951. Total energy = 4722.9169 kcal/mol (4718.8823 without restraints) Performing minimization step: 4952. Total energy = 4722.5286 kcal/mol (4718.4952 without restraints) Performing minimization step: 4953. Total energy = 4722.1415 kcal/mol (4718.1091 without restraints) Performing minimization step: 4954. Total energy = 4721.7542 kcal/mol (4717.7229 without restraints) Performing minimization step: 4955. Total energy = 4721.3669 kcal/mol (4717.3367 without restraints) Performing minimization step: 4956. Total energy = 4720.9800 kcal/mol (4716.9509 without restraints) Performing minimization step: 4957. Total energy = 4720.5933 kcal/mol (4716.5654 without restraints) Performing minimization step: 4958. Total energy = 4720.2073 kcal/mol (4716.1804 without restraints) Performing minimization step: 4959. Total energy = 4719.8215 kcal/mol (4715.7958 without restraints) Performing minimization step: 4960. Total energy = 4719.4358 kcal/mol (4715.4111 without restraints) Performing minimization step: 4961. Total energy = 4719.0505 kcal/mol (4715.0269 without restraints) Performing minimization step: 4962. Total energy = 4718.6657 kcal/mol (4714.6433 without restraints) Performing minimization step: 4963. Total energy = 4718.2811 kcal/mol (4714.2597 without restraints) Performing minimization step: 4964. Total energy = 4717.8966 kcal/mol (4713.8763 without restraints) Performing minimization step: 4965. Total energy = 4717.5129 kcal/mol (4713.4938 without restraints) Performing minimization step: 4966. Total energy = 4717.1291 kcal/mol (4713.1110 without restraints) Performing minimization step: 4967. Total energy = 4716.7452 kcal/mol (4712.7281 without restraints) Performing minimization step: 4968. Total energy = 4716.3618 kcal/mol (4712.3459 without restraints) Performing minimization step: 4969. Total energy = 4715.9788 kcal/mol (4711.9640 without restraints) Performing minimization step: 4970. Total energy = 4715.5964 kcal/mol (4711.5827 without restraints) Performing minimization step: 4971. Total energy = 4715.2141 kcal/mol (4711.2014 without restraints) Performing minimization step: 4972. Total energy = 4714.8320 kcal/mol (4710.8205 without restraints) Performing minimization step: 4973. Total energy = 4714.4505 kcal/mol (4710.4401 without restraints) Performing minimization step: 4974. Total energy = 4714.0688 kcal/mol (4710.0596 without restraints) Performing minimization step: 4975. Total energy = 4713.6877 kcal/mol (4709.6796 without restraints) Performing minimization step: 4976. Total energy = 4713.3070 kcal/mol (4709.3000 without restraints) Performing minimization step: 4977. Total energy = 4712.9263 kcal/mol (4708.9203 without restraints) Performing minimization step: 4978. Total energy = 4712.5461 kcal/mol (4708.5414 without restraints) Performing minimization step: 4979. Total energy = 4712.1663 kcal/mol (4708.1625 without restraints) Performing minimization step: 4980. Total energy = 4711.7870 kcal/mol (4707.7843 without restraints) Performing minimization step: 4981. Total energy = 4711.4077 kcal/mol (4707.4062 without restraints) Performing minimization step: 4982. Total energy = 4711.0289 kcal/mol (4707.0285 without restraints) Performing minimization step: 4983. Total energy = 4710.6504 kcal/mol (4706.6512 without restraints) Performing minimization step: 4984. Total energy = 4710.2722 kcal/mol (4706.2740 without restraints) Performing minimization step: 4985. Total energy = 4709.8942 kcal/mol (4705.8970 without restraints) Performing minimization step: 4986. Total energy = 4709.5165 kcal/mol (4705.5204 without restraints) Performing minimization step: 4987. Total energy = 4709.1390 kcal/mol (4705.1441 without restraints) Performing minimization step: 4988. Total energy = 4708.7617 kcal/mol (4704.7678 without restraints) Performing minimization step: 4989. Total energy = 4708.3848 kcal/mol (4704.3920 without restraints) Performing minimization step: 4990. Total energy = 4708.0085 kcal/mol (4704.0170 without restraints) Performing minimization step: 4991. Total energy = 4707.6328 kcal/mol (4703.6423 without restraints) Performing minimization step: 4992. Total energy = 4707.2566 kcal/mol (4703.2671 without restraints) Performing minimization step: 4993. Total energy = 4706.8807 kcal/mol (4702.8925 without restraints) Performing minimization step: 4994. Total energy = 4706.5051 kcal/mol (4702.5178 without restraints) Performing minimization step: 4995. Total energy = 4706.1299 kcal/mol (4702.1437 without restraints) Performing minimization step: 4996. Total energy = 4705.7549 kcal/mol (4701.7699 without restraints) Performing minimization step: 4997. Total energy = 4705.3801 kcal/mol (4701.3961 without restraints) Performing minimization step: 4998. Total energy = 4705.0061 kcal/mol (4701.0233 without restraints) Performing minimization step: 4999. Total energy = 4704.6320 kcal/mol (4700.6503 without restraints) Performing minimization step: 5000. Total energy = 4704.2583 kcal/mol (4700.2777 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/92c4737e/tmp/L3_refx/L3_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to L3_refx.pdb DONE!