============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim.pdb ============================================================================= Atom's 1262 C6 residue renamed to RU3 Atom's 1261 C5 residue renamed to RU3 Atom's 1260 O4 residue renamed to RU3 Atom's 1259 C4 residue renamed to RU3 Atom's 1258 N3 residue renamed to RU3 Atom's 1257 O2 residue renamed to RU3 Atom's 1256 C2 residue renamed to RU3 Atom's 1255 N1 residue renamed to RU3 Atom's 1254 C1' residue renamed to RU3 Atom's 1253 O2' residue renamed to RU3 Atom's 1252 C2' residue renamed to RU3 Atom's 1251 O3' residue renamed to RU3 Atom's 1250 C3' residue renamed to RU3 Atom's 1249 O4' residue renamed to RU3 Atom's 1248 C4' residue renamed to RU3 Atom's 1247 C5' residue renamed to RU3 Atom's 1246 O5' residue renamed to RU3 Atom's 1245 OP2 residue renamed to RU3 Atom's 1244 OP1 residue renamed to RU3 Atom's 1243 P residue renamed to RU3 Missing atom added: ATOM 23 H5'1 A A 1 65.337 -18.254 39.466 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 1 64.555 -16.622 39.864 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 1 63.267 -18.643 40.196 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 1 64.056 -17.357 42.763 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 1 64.030 -21.091 42.661 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 1 62.873 -18.982 43.991 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 1 61.529 -19.375 41.880 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 1 66.994 -19.033 42.704 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 1 68.526 -20.018 47.254 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 1 67.807 -20.863 48.553 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 1 63.416 -22.316 47.451 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 2 60.087 -18.357 43.326 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 2 59.108 -16.796 43.534 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 2 58.547 -18.650 44.931 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 2 60.066 -16.546 46.522 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 2 60.777 -19.832 47.448 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 2 60.906 -16.765 47.829 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 2 59.900 -16.866 48.713 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 2 62.349 -17.550 46.197 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 2 66.185 -17.874 48.679 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 2 65.802 -19.167 49.734 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 2 64.862 -16.941 46.618 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 3 56.947 -19.546 48.376 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 3 56.646 -18.793 50.041 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 3 57.263 -20.294 50.878 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 3 58.000 -17.312 51.181 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 3 60.588 -19.787 52.038 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 3 59.177 -17.665 53.099 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 3 57.717 -19.685 53.417 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 3 59.783 -17.505 49.171 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 3 65.402 -15.602 52.626 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 3 63.867 -18.190 54.683 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 3 64.792 -16.800 54.581 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 4 58.173 -18.837 54.207 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 4 57.363 -18.235 55.761 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 4 59.372 -18.607 56.331 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 4 58.566 -15.550 55.852 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 4 62.120 -16.740 55.829 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 4 60.138 -14.491 56.361 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 4 60.348 -15.199 58.068 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 4 59.678 -15.931 53.374 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 4 64.186 -13.371 53.382 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 4 60.152 -14.446 51.470 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 5 60.444 -16.288 59.380 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 5 59.632 -15.278 60.704 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 5 61.915 -15.092 60.807 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 5 60.528 -12.567 59.659 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 5 64.118 -13.586 58.779 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 5 62.698 -11.474 59.862 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 5 63.080 -13.245 61.728 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 5 60.821 -13.578 57.050 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 5 65.264 -8.959 54.629 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 5 66.781 -10.199 57.703 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 5 66.558 -8.945 56.618 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 6 62.203 -10.755 63.695 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 6 61.165 -9.219 63.665 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 6 63.401 -8.735 63.763 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 6 61.872 -7.419 61.908 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 6 65.248 -8.562 60.681 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 6 63.925 -6.270 61.227 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 6 64.863 -7.159 63.493 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 6 62.108 -9.820 60.217 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 6 60.877 -8.945 55.738 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 6 62.070 -7.818 55.249 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 6 60.533 -10.127 58.051 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 7 64.170 -6.575 64.336 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 7 63.805 -4.764 64.489 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 7 65.685 -4.596 63.784 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 7 63.162 -3.590 62.246 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 7 66.310 -4.345 60.394 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 7 64.587 -2.283 60.852 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 7 66.225 -2.342 62.852 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 7 63.246 -5.875 61.061 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 7 61.033 -6.209 56.896 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 7 62.030 -5.257 55.880 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 7 61.284 -6.770 59.443 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 8 65.677 -0.660 62.971 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 8 64.887 0.982 63.311 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 8 66.678 1.084 61.789 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 8 63.925 1.461 60.509 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 8 66.561 -0.239 58.526 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 8 64.867 1.907 58.431 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 8 66.928 2.651 59.639 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 8 63.762 -1.580 60.507 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 8 60.487 -2.561 57.022 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 8 60.442 -2.210 55.351 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 8 64.330 0.152 53.974 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 9 65.919 4.620 58.952 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 9 64.714 6.029 58.926 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 9 65.647 5.512 56.845 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 9 62.784 5.343 57.070 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 9 64.410 2.745 54.926 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 9 62.782 4.756 54.695 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 9 65.283 5.690 54.829 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 9 63.238 2.454 58.111 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 9 59.217 -0.018 57.998 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 9 58.836 -0.011 56.329 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 9 61.217 1.100 59.268 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 10 63.304 7.469 53.610 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 10 62.326 9.035 53.761 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 10 61.709 8.045 51.858 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 10 59.624 8.142 54.118 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 10 59.623 5.381 51.489 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 10 57.991 7.409 52.476 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 10 59.606 8.480 50.766 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 10 60.350 5.989 54.887 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 10 56.308 2.910 53.801 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 10 59.324 4.733 56.746 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 11 58.293 9.971 50.558 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 11 56.820 11.014 50.979 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 11 56.244 9.608 49.336 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 11 54.776 9.370 51.920 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 11 55.444 6.242 49.883 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 11 53.336 7.758 50.845 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 11 54.208 8.893 48.663 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 11 56.558 7.620 52.901 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 11 53.859 3.179 53.135 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 11 56.492 6.413 55.058 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 12 51.514 9.543 49.384 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 12 50.254 10.656 50.165 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 12 49.500 8.535 49.424 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 12 49.496 8.741 52.396 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 12 50.323 5.409 50.597 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 12 48.449 6.518 52.372 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 12 47.767 7.223 49.966 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 12 52.305 7.444 53.050 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 12 52.923 3.713 56.158 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 12 52.300 2.123 56.189 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 12 49.359 1.348 52.535 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 13 45.995 7.964 50.802 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 13 44.818 8.653 52.057 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 13 44.442 6.431 51.313 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 13 45.386 6.399 54.139 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 13 46.557 3.686 51.985 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 13 45.003 3.951 54.004 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 13 43.614 4.537 51.773 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 13 48.157 6.719 53.353 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 13 50.775 4.731 56.989 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 13 50.835 3.150 57.632 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 13 47.703 0.289 55.487 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 14 42.654 4.202 54.247 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 14 41.415 4.740 55.516 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 14 42.001 2.418 55.428 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 14 43.050 3.650 57.909 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 14 45.077 0.953 56.101 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 14 43.839 1.433 58.526 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 14 42.027 0.578 56.956 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 14 45.452 4.348 56.120 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 14 49.428 5.334 58.471 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 14 49.776 3.841 59.234 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 14 47.423 6.001 56.925 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 15 41.776 0.703 59.757 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 15 40.193 0.957 60.686 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 15 42.023 -0.408 61.596 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 15 42.468 2.506 62.674 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 15 45.259 -0.053 61.982 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 15 44.218 1.448 64.104 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 15 42.716 -0.635 63.986 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 15 44.110 2.563 60.265 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 15 48.616 3.398 62.714 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 15 45.412 4.565 59.637 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 16 42.703 1.480 66.289 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 16 41.681 2.742 67.183 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 16 43.330 2.972 68.287 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 16 42.205 5.222 66.382 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 16 45.741 5.244 67.647 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 16 43.518 6.812 67.601 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 16 43.255 5.086 69.540 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 16 43.954 4.351 64.399 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 16 45.806 7.857 61.529 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 16 46.822 9.192 61.850 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 16 47.931 9.450 66.467 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 17 41.910 7.008 69.795 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 17 40.402 8.068 69.987 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 17 42.641 8.857 70.700 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 17 41.737 10.382 68.443 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 17 45.398 9.368 68.499 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 17 43.958 11.535 68.678 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 17 43.987 10.492 71.087 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 17 42.961 8.031 66.632 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 17 43.199 9.687 62.218 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 17 44.230 11.042 62.397 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 17 42.295 8.017 64.023 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 18 42.642 13.161 70.479 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 18 41.116 14.054 71.036 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 18 42.403 15.617 70.315 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 18 39.969 14.870 68.442 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 18 43.085 16.688 67.265 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 18 40.375 16.993 67.328 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 18 41.268 17.774 69.611 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 18 41.670 13.087 66.756 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 18 41.518 12.987 61.863 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 18 41.845 14.171 60.676 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 18 43.038 18.325 62.658 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 19 35.269 16.073 68.490 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 19 35.947 14.639 67.530 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 19 34.858 15.037 66.122 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 19 37.603 14.029 66.382 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 19 36.846 16.356 63.481 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 19 37.769 13.752 64.055 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 19 35.273 13.661 64.007 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 19 38.469 18.129 65.615 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 19 42.085 19.245 62.580 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 19 42.495 18.654 61.031 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 19 39.821 14.906 59.847 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 20 34.323 10.659 64.371 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 20 34.180 12.502 64.238 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 20 32.268 11.115 63.685 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 20 32.234 11.828 62.656 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 20 29.578 12.073 65.209 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 20 29.911 11.395 62.638 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 20 30.436 9.331 64.066 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 20 32.691 14.173 64.544 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 20 30.820 18.157 62.388 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 20 29.242 18.546 61.862 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 20 26.243 14.923 62.551 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 21 30.447 8.918 61.076 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 21 31.063 8.557 59.366 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 21 28.921 9.159 59.190 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 21 30.964 11.269 58.165 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 21 27.551 12.249 59.416 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 21 28.967 12.354 57.170 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 21 27.994 9.872 57.366 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 21 30.859 12.297 60.714 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 21 29.059 16.909 59.117 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 21 32.150 14.319 61.315 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 22 29.160 11.708 55.241 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 22 30.259 11.757 53.749 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 22 29.126 13.679 53.849 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 22 32.151 13.866 54.499 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 22 29.702 16.356 55.931 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 22 32.017 16.232 54.402 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 22 30.151 15.988 52.789 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 22 31.502 13.461 57.367 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 22 34.378 15.924 60.479 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 22 34.636 17.594 60.731 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 22 32.134 20.216 57.655 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 23 32.651 16.570 51.750 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 23 34.005 16.043 50.599 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 23 34.088 18.276 51.352 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 23 36.126 16.526 52.882 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 23 34.498 19.528 54.494 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 23 37.001 18.447 53.930 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 23 36.179 19.656 51.854 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 23 33.840 16.039 54.596 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 23 34.664 14.653 59.038 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 23 35.428 16.029 59.711 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 23 33.770 14.248 56.611 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 24 38.346 19.513 51.477 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 24 39.517 18.950 50.155 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 24 40.100 20.642 51.912 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 24 40.998 17.868 53.057 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 24 39.716 20.871 55.152 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 24 41.999 19.177 54.906 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 24 42.368 21.005 53.220 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 24 38.908 17.732 54.002 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 24 38.114 15.171 57.889 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 24 38.647 16.224 59.130 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 24 38.020 15.543 55.299 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 25 44.751 19.993 53.384 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 25 46.000 19.181 52.282 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 25 46.245 20.549 54.460 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 25 46.338 17.856 55.579 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 25 44.105 20.551 57.195 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 25 46.325 18.996 57.783 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 25 47.171 21.021 56.375 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 25 43.420 17.808 55.374 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 25 42.559 17.092 60.447 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 25 42.148 15.806 56.057 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 26 48.301 20.156 57.829 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 26 49.862 19.342 58.407 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 26 49.139 19.964 60.216 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 26 49.316 16.894 59.586 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 26 47.011 18.265 62.210 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 26 49.001 16.421 61.877 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 26 50.092 18.613 62.384 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 26 46.527 16.990 58.554 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 26 44.458 12.504 63.304 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 26 46.253 15.076 65.161 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 26 45.786 13.476 65.013 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 27 51.734 17.350 62.880 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 27 53.419 16.609 62.666 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 27 52.517 16.330 64.816 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 27 52.685 13.759 63.239 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 27 49.831 14.310 65.667 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 27 51.944 12.592 65.205 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 27 52.852 14.609 66.498 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 27 50.131 14.634 62.287 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 27 47.652 10.354 63.898 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 27 48.876 13.317 60.610 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 28 54.496 14.076 66.713 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 28 55.810 12.790 66.952 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 28 54.469 12.688 68.704 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 28 54.408 10.310 66.738 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 28 51.393 11.204 68.867 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 28 53.126 9.106 68.381 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 28 54.292 10.706 70.049 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 28 52.534 11.704 65.538 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 28 49.493 9.379 62.766 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 28 48.569 8.496 63.904 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 28 51.463 11.065 63.149 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 29 54.755 8.284 70.314 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 29 56.074 6.984 70.234 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 29 54.200 6.062 71.089 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 29 54.845 5.340 68.100 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 29 51.342 5.203 69.497 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 29 53.200 3.611 68.223 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 29 53.744 3.553 70.721 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 29 53.409 7.374 67.090 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 29 50.608 6.816 63.127 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 29 49.223 5.865 62.819 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 29 47.960 3.355 66.654 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 30 55.037 1.750 69.813 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 30 56.320 0.690 68.997 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 30 54.216 -0.287 69.069 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 30 55.040 0.571 66.268 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 30 51.381 0.645 67.313 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 30 53.046 -0.548 65.468 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 30 53.264 -1.856 67.731 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 30 53.823 3.475 66.216 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 30 50.907 5.231 62.693 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 30 49.396 4.713 62.089 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 30 48.011 0.654 64.141 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 31 54.357 -3.491 65.671 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 31 55.433 -3.749 64.185 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 31 53.218 -4.424 63.948 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 31 54.144 -2.725 61.996 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 31 50.564 -2.157 63.339 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 31 51.893 -2.908 61.020 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 31 51.766 -5.001 62.571 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 31 53.631 -0.070 63.530 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 31 49.070 2.435 59.051 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 31 47.926 -0.953 59.759 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 31 48.034 0.331 58.692 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 32 52.493 -5.711 60.547 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 32 53.623 -6.727 59.487 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 32 51.338 -6.289 58.772 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 32 53.258 -4.560 57.195 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 32 49.786 -3.259 58.214 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 32 51.360 -3.751 55.938 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 32 50.284 -5.949 56.496 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 32 52.873 -2.865 59.452 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 32 50.969 1.117 56.698 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 32 54.039 -0.689 59.596 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 33 53.346 -4.816 52.972 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 33 52.934 -3.598 54.308 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 33 52.272 -3.048 52.105 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 33 53.376 -2.849 51.501 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 33 50.415 -1.043 51.973 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 33 52.858 -1.397 50.493 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 33 51.491 -2.261 49.424 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 33 52.503 -2.148 54.873 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 33 55.321 1.757 55.782 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 33 55.539 3.236 54.955 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 33 52.987 3.370 50.946 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 34 53.076 -2.530 47.876 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 34 54.281 -3.548 46.904 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 34 54.680 -1.267 46.752 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 34 56.694 -2.740 48.584 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 34 55.748 0.912 49.113 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 34 57.962 -0.671 48.619 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 34 56.839 -0.177 46.354 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 34 54.692 -2.098 50.739 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 34 59.577 1.080 54.366 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 34 59.680 2.648 51.076 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 34 60.481 2.183 52.470 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 35 59.426 -0.706 46.313 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 35 60.139 -2.036 45.238 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 35 61.186 0.084 46.144 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 35 62.063 -1.987 48.009 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 35 61.065 1.247 49.511 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 35 63.202 -0.309 49.291 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 35 63.172 1.102 47.180 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 35 59.187 -1.534 49.336 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 35 61.684 -0.962 53.858 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 35 58.500 -2.969 51.225 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 36 65.627 -0.324 47.748 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 36 66.643 -1.870 47.667 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 36 67.700 -1.020 49.104 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 36 66.077 -3.688 49.454 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 36 67.031 -1.680 52.412 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 36 67.251 -4.173 51.420 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 36 69.140 -2.781 50.418 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 36 63.919 -2.286 50.241 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 36 63.471 -5.214 56.432 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 36 66.928 -4.090 56.174 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 36 65.816 -5.179 56.788 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 37 66.414 -7.670 49.317 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 37 67.284 -6.934 50.779 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 37 67.386 -8.242 51.700 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 37 68.799 -9.713 50.666 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 37 67.758 -8.302 54.121 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 37 69.727 -9.921 52.930 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 37 70.444 -7.499 52.559 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 37 65.610 -9.935 51.290 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 37 64.388 -14.248 53.266 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 37 64.862 -15.025 54.711 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 37 68.164 -12.510 57.026 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 38 71.994 -9.656 52.727 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 38 73.681 -9.699 51.962 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 38 73.011 -10.526 54.248 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 38 72.869 -13.026 52.537 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 38 70.363 -12.207 55.395 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 38 72.272 -14.123 54.708 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 38 73.574 -12.098 55.717 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 38 69.698 -11.951 52.347 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 38 68.181 -16.464 54.425 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 38 68.032 -13.289 51.111 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 39 74.848 -14.295 55.210 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 39 76.457 -15.040 54.668 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 39 75.385 -16.369 56.198 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 39 75.253 -17.541 53.346 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 39 72.581 -18.148 56.090 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 39 74.326 -19.536 54.269 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 39 75.671 -19.115 56.244 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 39 72.715 -16.206 53.240 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 39 68.853 -17.476 50.827 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 39 68.316 -18.848 51.698 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 39 70.921 -15.926 51.245 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 40 79.904 -17.993 53.439 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 40 79.060 -16.751 52.353 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 40 81.007 -16.930 51.524 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 40 78.753 -18.493 49.897 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 40 82.555 -18.990 49.618 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 40 80.330 -18.472 48.036 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 40 81.059 -16.229 49.110 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 40 80.550 -20.253 51.644 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 40 81.906 -23.222 47.594 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 40 80.096 -22.680 51.779 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 41 79.786 -15.607 47.389 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 41 78.175 -15.215 46.563 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 41 79.761 -15.752 44.996 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 41 77.478 -17.721 45.269 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 41 80.921 -18.910 44.258 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 41 78.451 -18.765 43.241 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 41 79.591 -16.461 42.815 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 41 79.171 -18.951 47.167 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 41 79.028 -23.481 44.629 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 41 78.302 -20.922 48.372 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 42 75.997 -17.461 41.480 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 42 74.322 -16.688 41.662 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 42 74.730 -18.752 40.355 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 42 73.347 -19.465 42.863 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 42 76.069 -21.767 41.695 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 42 73.414 -21.765 42.195 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 42 73.706 -20.873 39.817 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 42 76.145 -19.389 44.252 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 42 76.234 -21.805 48.314 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 42 75.846 -23.391 47.800 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 42 76.458 -19.598 46.922 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 43 71.283 -22.070 39.979 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 43 69.478 -21.652 40.026 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 43 69.997 -23.971 40.044 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 43 68.930 -23.034 42.700 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 43 71.603 -25.752 42.533 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 43 69.008 -25.352 43.414 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 43 68.911 -25.907 40.901 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 43 71.469 -22.342 43.393 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 43 72.131 -25.717 47.297 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 43 72.088 -21.445 45.612 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 44 66.659 -26.828 43.035 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 44 64.873 -26.374 43.227 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 44 65.507 -27.803 44.885 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 44 64.963 -24.931 45.812 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 44 67.462 -27.114 47.622 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 44 65.167 -25.720 48.081 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 44 64.514 -28.009 47.086 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 44 67.451 -24.344 45.293 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 44 69.315 -23.415 50.060 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 44 68.577 -22.180 45.700 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 45 62.138 -27.364 48.428 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 45 60.758 -26.174 48.763 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 45 61.949 -27.492 50.529 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 45 62.390 -24.867 51.103 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 45 65.467 -27.131 51.205 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 45 63.896 -25.578 52.868 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 45 62.692 -27.820 52.628 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 45 64.203 -24.643 49.072 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 45 68.258 -23.234 52.007 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 45 65.309 -22.491 48.567 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 46 62.440 -26.924 54.645 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 46 61.049 -26.300 55.697 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 46 63.203 -26.621 56.741 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 46 62.674 -23.655 56.263 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 46 66.181 -25.067 55.981 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 46 64.751 -23.220 57.431 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 46 64.339 -25.553 58.498 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 46 63.599 -23.825 53.687 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 46 69.090 -19.722 54.075 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 46 69.451 -22.035 56.869 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 46 69.738 -20.523 56.212 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 47 64.556 -24.122 59.943 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 47 63.882 -22.967 61.226 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 47 66.108 -22.748 61.188 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 47 64.501 -20.349 60.112 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 47 67.974 -21.029 58.847 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 47 66.524 -19.074 60.070 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 47 67.338 -20.642 61.906 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 47 64.373 -21.356 57.514 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 47 64.721 -18.081 53.933 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 47 65.954 -16.985 53.489 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 47 69.749 -17.413 56.321 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 48 66.734 -18.619 63.111 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 48 65.739 -17.725 64.394 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 48 67.751 -16.682 63.589 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 48 65.293 -15.384 62.272 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 48 68.604 -15.716 60.429 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 48 66.839 -13.780 61.296 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 48 68.368 -14.350 63.290 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 48 65.559 -17.355 60.397 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 48 66.491 -14.276 56.310 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 48 64.053 -17.530 58.444 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 49 65.305 -10.676 63.132 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 49 65.935 -11.702 61.723 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 49 66.868 -9.493 62.182 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 49 68.843 -11.570 62.856 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 49 68.529 -8.564 65.161 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 49 70.409 -10.029 63.553 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 49 69.320 -8.415 62.087 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 49 67.102 -11.536 66.253 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 49 70.364 -12.623 69.740 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 49 71.905 -11.988 70.113 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 49 73.161 -8.576 67.049 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 50 71.697 -9.538 60.873 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 50 72.539 -10.724 59.726 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 50 74.063 -9.812 61.144 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 50 73.482 -12.784 61.555 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 50 74.484 -10.627 64.479 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 50 75.322 -12.837 63.113 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 50 76.176 -10.772 61.822 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 50 71.511 -12.018 63.207 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 50 73.385 -14.113 67.584 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 50 70.075 -13.609 64.441 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 51 74.845 -15.521 61.701 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 51 76.657 -15.461 61.316 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 51 75.242 -17.361 62.263 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 51 74.855 -17.675 59.187 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 51 72.024 -18.223 61.585 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 51 73.397 -19.535 59.666 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 51 74.787 -19.652 61.883 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 51 73.530 -15.734 59.360 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 51 69.076 -17.730 57.558 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 51 72.541 -14.724 57.331 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 52 76.045 -21.578 57.527 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 52 76.232 -20.416 56.095 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 52 74.771 -22.511 56.460 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 52 74.927 -22.806 55.290 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 52 71.533 -22.303 56.929 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 52 73.048 -24.210 55.516 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 52 73.711 -24.373 57.934 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 52 73.332 -20.240 54.886 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 52 70.814 -21.012 50.788 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 52 69.626 -22.164 50.365 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 52 68.639 -25.049 54.012 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 53 74.962 -25.785 56.992 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 53 76.549 -26.542 57.578 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 53 74.119 -27.371 57.148 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 53 75.257 -27.447 54.298 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 53 71.701 -26.111 55.260 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 53 72.861 -28.179 53.779 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 53 72.964 -28.988 56.283 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 53 74.130 -24.531 54.455 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 53 70.729 -25.284 50.607 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 53 74.293 -23.071 52.475 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 54 73.535 -31.042 54.251 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 54 74.747 -32.288 53.610 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 54 72.670 -32.466 52.622 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 54 74.774 -31.271 50.732 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 54 71.093 -30.348 50.461 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 54 73.190 -31.390 48.954 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 54 72.177 -33.294 50.297 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 54 74.236 -28.843 51.581 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 54 71.945 -26.707 47.435 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 54 75.124 -26.693 50.749 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 55 73.050 -33.562 47.734 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 55 74.278 -34.691 46.930 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 55 72.843 -33.304 45.551 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 55 75.649 -32.214 45.552 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 55 72.644 -29.851 45.494 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 55 74.843 -30.566 43.941 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 55 72.982 -32.303 43.459 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 55 74.927 -30.494 48.129 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 55 75.845 -24.412 45.077 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 55 73.795 -26.327 42.750 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 55 74.938 -25.132 43.008 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 56 75.756 -32.213 41.430 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 56 77.017 -33.467 40.908 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 56 76.803 -31.180 39.955 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 56 79.116 -31.057 41.864 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 56 76.458 -28.139 41.190 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 56 79.263 -28.692 40.914 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 56 78.105 -29.851 38.893 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 56 77.441 -30.051 44.181 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 56 79.114 -26.283 46.826 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 56 79.384 -24.640 46.447 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 56 78.389 -23.730 41.889 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 57 80.694 -29.518 38.100 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 57 82.488 -29.983 38.124 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 57 82.346 -27.802 37.705 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 57 83.384 -28.581 40.532 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 57 81.609 -25.354 39.982 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 57 84.040 -26.194 40.677 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 57 83.977 -26.412 38.014 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 57 81.427 -28.687 41.579 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 57 81.155 -27.268 46.261 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 57 81.210 -25.730 47.002 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 57 81.972 -22.296 43.804 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 58 88.183 -27.748 40.048 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 58 87.029 -26.850 41.187 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 58 88.029 -25.346 40.999 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 58 88.128 -25.622 42.429 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 58 85.106 -23.545 41.598 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 58 87.515 -23.431 42.980 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 58 88.010 -22.876 40.583 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 58 85.566 -27.043 42.820 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 58 83.559 -26.470 47.251 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 58 82.976 -25.097 48.082 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 58 83.586 -21.137 45.523 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 59 89.411 -21.783 42.717 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 59 91.251 -21.589 42.625 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 59 89.914 -20.072 43.960 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 59 90.817 -22.385 45.887 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 59 87.538 -20.413 46.227 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 59 89.838 -21.258 47.704 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 59 90.469 -19.195 46.487 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 59 88.546 -23.502 44.954 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 59 85.435 -23.441 49.116 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 59 87.510 -25.632 45.654 1.00 0.00 H Missing atom added: ATOM 21 H5'1 RU3 A 60 91.336 -20.085 47.992 1.00 0.00 H Missing atom added: ATOM 22 H5'2 RU3 A 60 92.853 -20.127 49.054 1.00 0.00 H Missing atom added: ATOM 23 H4' RU3 A 60 91.706 -20.096 50.550 1.00 0.00 H Missing atom added: ATOM 24 H3' RU3 A 60 92.948 -22.994 49.848 1.00 0.00 H Missing atom added: ATOM 27 H1' RU3 A 60 90.425 -22.174 52.439 1.00 0.00 H Missing atom added: ATOM 25 H2' RU3 A 60 92.417 -24.160 51.148 1.00 0.00 H Missing atom added: ATOM 26 HO'2 RU3 A 60 93.390 -23.536 52.311 1.00 0.00 H Missing atom added: ATOM 29 H6 RU3 A 60 90.913 -23.836 49.806 1.00 0.00 H Missing atom added: ATOM 30 H3 RU3 A 60 87.050 -25.086 52.837 1.00 0.00 H Missing atom added: ATOM 28 H5 RU3 A 60 89.655 -25.742 49.113 1.00 0.00 H Missing atom added: ATOM 31 H3T RU3 A 60 94.898 -21.816 51.364 1.00 0.00 H Missing atom added: ATOM 3 OP3 A A 1 68.127 -17.335 39.563 1.00 30.66 O Number of atoms: 1902 Number of residues: 60 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2048 Number of angles built: 3669 Number of dihedrals built: 5585 Number of impropers built: 395 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 1802134 Number of van der Waals pairs: 266767 Number of H-bonds built: 46 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 11 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 142564333.2515 kcal/mol (139432760.8523 without restraints) Performing minimization step: 2. Total energy = 118528780.2996 kcal/mol (115966933.9215 without restraints) Performing minimization step: 3. Total energy = 98836930.9145 kcal/mol (96734748.4020 without restraints) Performing minimization step: 4. Total energy = 82655138.5133 kcal/mol (80925024.4365 without restraints) Performing minimization step: 5. Total energy = 69318831.8299 kcal/mol (67890832.1945 without restraints) Performing minimization step: 6. Total energy = 58296431.6225 kcal/mol (57114494.9264 without restraints) Performing minimization step: 7. Total energy = 49161340.4329 kcal/mol (48180409.5356 without restraints) Performing minimization step: 8. Total energy = 41570118.0618 kcal/mol (40753859.9488 without restraints) Performing minimization step: 9. Total energy = 35245415.1206 kcal/mol (34564442.3214 without restraints) Performing minimization step: 10. Total energy = 29962580.3683 kcal/mol (29393052.7245 without restraints) Performing minimization step: 11. Total energy = 25539115.0641 kcal/mol (25061636.8077 without restraints) Performing minimization step: 12. Total energy = 21826341.5124 kcal/mol (21425088.4351 without restraints) Performing minimization step: 13. Total energy = 18702799.6215 kcal/mol (18364826.1320 without restraints) Performing minimization step: 14. Total energy = 16068996.6073 kcal/mol (15783683.8980 without restraints) Performing minimization step: 15. Total energy = 13843219.7817 kcal/mol (13601835.0409 without restraints) Performing minimization step: 16. Total energy = 11958187.2135 kcal/mol (11753530.5048 without restraints) Performing minimization step: 17. Total energy = 10358360.8231 kcal/mol (10184481.3837 without restraints) Performing minimization step: 18. Total energy = 8997784.7931 kcal/mol (8849752.4693 without restraints) Performing minimization step: 19. Total energy = 7838341.7955 kcal/mol (7712062.3976 without restraints) Performing minimization step: 20. Total energy = 6848342.4914 kcal/mol (6740408.2339 without restraints) Performing minimization step: 21. Total energy = 6001381.6167 kcal/mol (5908949.6622 without restraints) Performing minimization step: 22. Total energy = 5275407.8965 kcal/mol (5196101.4754 without restraints) Performing minimization step: 23. Total energy = 4651965.9333 kcal/mol (4583793.6432 without restraints) Performing minimization step: 24. Total energy = 4115576.7702 kcal/mol (4056866.5560 without restraints) Performing minimization step: 25. Total energy = 3653230.5666 kcal/mol (3602575.5847 without restraints) Performing minimization step: 26. Total energy = 3253970.1422 kcal/mol (3210184.2696 without restraints) Performing minimization step: 27. Total energy = 2908548.3545 kcal/mol (2870629.5438 without restraints) Performing minimization step: 28. Total energy = 2609145.6162 kcal/mol (2576245.6509 without restraints) Performing minimization step: 29. Total energy = 2349136.5199 kcal/mol (2320536.0014 without restraints) Performing minimization step: 30. Total energy = 2122896.6578 kcal/mol (2097984.2804 without restraints) Performing minimization step: 31. Total energy = 1925642.4219 kcal/mol (1903897.7708 without restraints) Performing minimization step: 32. Total energy = 1753297.9284 kcal/mol (1734277.1776 without restraints) Performing minimization step: 33. Total energy = 1602384.2992 kcal/mol (1585708.3040 without restraints) Performing minimization step: 34. Total energy = 1469927.4119 kcal/mol (1455271.7794 without restraints) Performing minimization step: 35. Total energy = 1353380.9282 kcal/mol (1340467.7274 without restraints) Performing minimization step: 36. Total energy = 1250561.9794 kcal/mol (1239152.8084 without restraints) Performing minimization step: 37. Total energy = 1159597.3385 kcal/mol (1149487.5175 without restraints) Performing minimization step: 38. Total energy = 1078878.2767 kcal/mol (1069891.9717 without restraints) Performing minimization step: 39. Total energy = 1007022.5987 kcal/mol (999008.7138 without restraints) Performing minimization step: 40. Total energy = 942842.5971 kcal/mol (935671.3002 without restraints) Performing minimization step: 41. Total energy = 885317.8736 kcal/mol (878877.6414 without restraints) Performing minimization step: 42. Total energy = 833572.1564 kcal/mol (827767.2460 without restraints) Performing minimization step: 43. Total energy = 786853.3997 kcal/mol (781601.6707 without restraints) Performing minimization step: 44. Total energy = 744516.5957 kcal/mol (739747.6238 without restraints) Performing minimization step: 45. Total energy = 706008.8510 kcal/mol (701662.2859 without restraints) Performing minimization step: 46. Total energy = 670856.3873 kcal/mol (666880.5209 without restraints) Performing minimization step: 47. Total energy = 638653.2030 kcal/mol (635003.7199 without restraints) Performing minimization step: 48. Total energy = 609051.1982 kcal/mol (605690.0893 without restraints) Performing minimization step: 49. Total energy = 581751.6030 kcal/mol (578646.2244 without restraints) Performing minimization step: 50. Total energy = 556497.5735 kcal/mol (553619.8356 without restraints) Performing minimization step: 51. Total energy = 533067.8332 kcal/mol (530393.5071 without restraints) Performing minimization step: 52. Total energy = 511271.2456 kcal/mol (508779.3721 without restraints) Performing minimization step: 53. Total energy = 490942.2061 kcal/mol (488614.5960 without restraints) Performing minimization step: 54. Total energy = 471936.7498 kcal/mol (469757.5624 without restraints) Performing minimization step: 55. Total energy = 454129.2751 kcal/mol (452084.6643 without restraints) Performing minimization step: 56. Total energy = 437409.7942 kcal/mol (435487.6118 without restraints) Performing minimization step: 57. Total energy = 421681.6280 kcal/mol (419871.1752 without restraints) Performing minimization step: 58. Total energy = 406859.4752 kcal/mol (405151.2938 without restraints) Performing minimization step: 59. Total energy = 392867.7944 kcal/mol (391253.4927 without restraints) Performing minimization step: 60. Total energy = 379639.4424 kcal/mol (378111.5480 without restraints) Performing minimization step: 61. Total energy = 367114.5329 kcal/mol (365666.3693 without restraints) Performing minimization step: 62. Total energy = 355239.4710 kcal/mol (353865.0527 without restraints) Performing minimization step: 63. Total energy = 343966.1363 kcal/mol (342660.0807 without restraints) Performing minimization step: 64. Total energy = 333251.1901 kcal/mol (332008.6420 without restraints) Performing minimization step: 65. Total energy = 323055.4850 kcal/mol (321872.0520 without restraints) Performing minimization step: 66. Total energy = 313343.5585 kcal/mol (312215.2562 without restraints) Performing minimization step: 67. Total energy = 304083.2005 kcal/mol (303006.4050 without restraints) Performing minimization step: 68. Total energy = 295245.0795 kcal/mol (294216.4865 without restraints) Performing minimization step: 69. Total energy = 286802.4195 kcal/mol (285819.0091 without restraints) Performing minimization step: 70. Total energy = 278730.7204 kcal/mol (277789.7257 without restraints) Performing minimization step: 71. Total energy = 271007.5135 kcal/mol (270106.3947 without restraints) Performing minimization step: 72. Total energy = 263612.1499 kcal/mol (262748.5700 without restraints) Performing minimization step: 73. Total energy = 256525.6126 kcal/mol (255697.4173 without restraints) Performing minimization step: 74. Total energy = 249730.3544 kcal/mol (248935.5539 without restraints) Performing minimization step: 75. Total energy = 243210.1531 kcal/mol (242446.9061 without restraints) Performing minimization step: 76. Total energy = 236949.9841 kcal/mol (236216.5837 without restraints) Performing minimization step: 77. Total energy = 230935.9089 kcal/mol (230230.7702 without restraints) Performing minimization step: 78. Total energy = 225154.9736 kcal/mol (224476.6224 without restraints) Performing minimization step: 79. Total energy = 219595.1210 kcal/mol (218942.1842 without restraints) Performing minimization step: 80. Total energy = 214245.1113 kcal/mol (213616.3078 without restraints) Performing minimization step: 81. Total energy = 209094.4513 kcal/mol (208488.5844 without restraints) Performing minimization step: 82. Total energy = 204133.3313 kcal/mol (203549.2811 without restraints) Performing minimization step: 83. Total energy = 199352.5678 kcal/mol (198789.2856 without restraints) Performing minimization step: 84. Total energy = 194743.5530 kcal/mol (194200.0550 without restraints) Performing minimization step: 85. Total energy = 190298.2086 kcal/mol (189773.5710 without restraints) Performing minimization step: 86. Total energy = 186008.9444 kcal/mol (185502.2986 without restraints) Performing minimization step: 87. Total energy = 181868.6207 kcal/mol (181379.1494 without restraints) Performing minimization step: 88. Total energy = 177870.5146 kcal/mol (177397.4478 without restraints) Performing minimization step: 89. Total energy = 174008.2892 kcal/mol (173550.9006 without restraints) Performing minimization step: 90. Total energy = 170275.9655 kcal/mol (169833.5694 without restraints) Performing minimization step: 91. Total energy = 166667.8969 kcal/mol (166239.8457 without restraints) Performing minimization step: 92. Total energy = 163178.7461 kcal/mol (162764.4273 without restraints) Performing minimization step: 93. Total energy = 159803.4641 kcal/mol (159402.2980 without restraints) Performing minimization step: 94. Total energy = 156537.2704 kcal/mol (156148.7079 without restraints) Performing minimization step: 95. Total energy = 153375.6353 kcal/mol (152999.1560 without restraints) Performing minimization step: 96. Total energy = 150314.2638 kcal/mol (149949.3740 without restraints) Performing minimization step: 97. Total energy = 147349.0804 kcal/mol (146995.3115 without restraints) Performing minimization step: 98. Total energy = 144476.2154 kcal/mol (144133.1223 without restraints) Performing minimization step: 99. Total energy = 141691.9918 kcal/mol (141359.1515 without restraints) Performing minimization step: 100. Total energy = 138992.9142 kcal/mol (138669.9243 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 101. Total energy = 136375.6569 kcal/mol (136062.1347 without restraints) Performing minimization step: 102. Total energy = 133837.0551 kcal/mol (133532.6360 without restraints) Performing minimization step: 103. Total energy = 131374.0941 kcal/mol (131078.4308 without restraints) Performing minimization step: 104. Total energy = 128983.9016 kcal/mol (128696.6632 without restraints) Performing minimization step: 105. Total energy = 126663.7391 kcal/mol (126384.6101 without restraints) Performing minimization step: 106. Total energy = 124410.9953 kcal/mol (124139.6746 without restraints) Performing minimization step: 107. Total energy = 122223.1779 kcal/mol (121959.3780 without restraints) Performing minimization step: 108. Total energy = 120097.9069 kcal/mol (119841.3535 without restraints) Performing minimization step: 109. Total energy = 118032.9098 kcal/mol (117783.3407 without restraints) Performing minimization step: 110. Total energy = 116026.0149 kcal/mol (115783.1795 without restraints) Performing minimization step: 111. Total energy = 114075.1460 kcal/mol (113838.8048 without restraints) Performing minimization step: 112. Total energy = 112178.3178 kcal/mol (111948.2415 without restraints) Performing minimization step: 113. Total energy = 110333.6308 kcal/mol (110109.6002 without restraints) Performing minimization step: 114. Total energy = 108539.2670 kcal/mol (108321.0721 without restraints) Performing minimization step: 115. Total energy = 106793.4855 kcal/mol (106580.9253 without restraints) Performing minimization step: 116. Total energy = 105094.6191 kcal/mol (104887.5010 without restraints) Performing minimization step: 117. Total energy = 103441.0702 kcal/mol (103239.2095 without restraints) Performing minimization step: 118. Total energy = 101831.3073 kcal/mol (101634.5272 without restraints) Performing minimization step: 119. Total energy = 100263.8620 kcal/mol (100071.9927 without restraints) Performing minimization step: 120. Total energy = 98737.3261 kcal/mol (98550.2048 without restraints) Performing minimization step: 121. Total energy = 97250.3482 kcal/mol (97067.8186 without restraints) Performing minimization step: 122. Total energy = 95801.6305 kcal/mol (95623.5427 without restraints) Performing minimization step: 123. Total energy = 94389.9278 kcal/mol (94216.1377 without restraints) Performing minimization step: 124. Total energy = 93014.0438 kcal/mol (92844.4129 without restraints) Performing minimization step: 125. Total energy = 91672.8289 kcal/mol (91507.2243 without restraints) Performing minimization step: 126. Total energy = 90365.1785 kcal/mol (90203.4724 without restraints) Performing minimization step: 127. Total energy = 89090.0306 kcal/mol (88932.1000 without restraints) Performing minimization step: 128. Total energy = 87846.3637 kcal/mol (87692.0905 without restraints) Performing minimization step: 129. Total energy = 86633.1954 kcal/mol (86482.4658 without restraints) Performing minimization step: 130. Total energy = 85449.5802 kcal/mol (85302.2848 without restraints) Performing minimization step: 131. Total energy = 84294.6081 kcal/mol (84150.6414 without restraints) Performing minimization step: 132. Total energy = 83167.4028 kcal/mol (83026.6635 without restraints) Performing minimization step: 133. Total energy = 82067.1208 kcal/mol (81929.5110 without restraints) Performing minimization step: 134. Total energy = 80992.9485 kcal/mol (80858.3740 without restraints) Performing minimization step: 135. Total energy = 79944.1028 kcal/mol (79812.4729 without restraints) Performing minimization step: 136. Total energy = 78919.8292 kcal/mol (78791.0564 without restraints) Performing minimization step: 137. Total energy = 77919.3992 kcal/mol (77793.3992 without restraints) Performing minimization step: 138. Total energy = 76942.1109 kcal/mol (76818.8022 without restraints) Performing minimization step: 139. Total energy = 75987.2869 kcal/mol (75866.5911 without restraints) Performing minimization step: 140. Total energy = 75054.2735 kcal/mol (74936.1149 without restraints) Performing minimization step: 141. Total energy = 74142.4405 kcal/mol (74026.7459 without restraints) Performing minimization step: 142. Total energy = 73251.1789 kcal/mol (73137.8776 without restraints) Performing minimization step: 143. Total energy = 72379.9010 kcal/mol (72268.9249 without restraints) Performing minimization step: 144. Total energy = 71528.0384 kcal/mol (71419.3215 without restraints) Performing minimization step: 145. Total energy = 70695.0430 kcal/mol (70588.5219 without restraints) Performing minimization step: 146. Total energy = 69880.3845 kcal/mol (69775.9976 without restraints) Performing minimization step: 147. Total energy = 69083.5507 kcal/mol (68981.2385 without restraints) Performing minimization step: 148. Total energy = 68304.0463 kcal/mol (68203.7513 without restraints) Performing minimization step: 149. Total energy = 67541.3924 kcal/mol (67443.0592 without restraints) Performing minimization step: 150. Total energy = 66795.1260 kcal/mol (66698.7007 without restraints) Performing minimization step: 151. Total energy = 66064.7988 kcal/mol (65970.2294 without restraints) Performing minimization step: 152. Total energy = 65349.9777 kcal/mol (65257.2140 without restraints) Performing minimization step: 153. Total energy = 64650.2431 kcal/mol (64559.2364 without restraints) Performing minimization step: 154. Total energy = 63965.1889 kcal/mol (63875.8919 without restraints) Performing minimization step: 155. Total energy = 63294.4223 kcal/mol (63206.7894 without restraints) Performing minimization step: 156. Total energy = 62637.5617 kcal/mol (62551.5488 without restraints) Performing minimization step: 157. Total energy = 61994.2397 kcal/mol (61909.8038 without restraints) Performing minimization step: 158. Total energy = 61364.0984 kcal/mol (61281.1981 without restraints) Performing minimization step: 159. Total energy = 60746.7920 kcal/mol (60665.3871 without restraints) Performing minimization step: 160. Total energy = 60141.9849 kcal/mol (60062.0366 without restraints) Performing minimization step: 161. Total energy = 59549.3529 kcal/mol (59470.8232 without restraints) Performing minimization step: 162. Total energy = 58968.5807 kcal/mol (58891.4332 without restraints) Performing minimization step: 163. Total energy = 58399.3627 kcal/mol (58323.5618 without restraints) Performing minimization step: 164. Total energy = 57841.4028 kcal/mol (57766.9141 without restraints) Performing minimization step: 165. Total energy = 57294.4141 kcal/mol (57221.2043 without restraints) Performing minimization step: 166. Total energy = 56758.1175 kcal/mol (56686.1542 without restraints) Performing minimization step: 167. Total energy = 56232.2430 kcal/mol (56161.4947 without restraints) Performing minimization step: 168. Total energy = 55716.5282 kcal/mol (55646.9644 without restraints) Performing minimization step: 169. Total energy = 55210.7187 kcal/mol (55142.3099 without restraints) Performing minimization step: 170. Total energy = 54714.5674 kcal/mol (54647.2849 without restraints) Performing minimization step: 171. Total energy = 54227.8345 kcal/mol (54161.6503 without restraints) Performing minimization step: 172. Total energy = 53750.2872 kcal/mol (53685.1743 without restraints) Performing minimization step: 173. Total energy = 53281.6993 kcal/mol (53217.6314 without restraints) Performing minimization step: 174. Total energy = 52821.8514 kcal/mol (52758.8029 without restraints) Performing minimization step: 175. Total energy = 52370.5300 kcal/mol (52308.4762 without restraints) Performing minimization step: 176. Total energy = 51927.5281 kcal/mol (51866.4449 without restraints) Performing minimization step: 177. Total energy = 51492.6444 kcal/mol (51432.5083 without restraints) Performing minimization step: 178. Total energy = 51065.6832 kcal/mol (51006.4716 without restraints) Performing minimization step: 179. Total energy = 50646.4546 kcal/mol (50588.1452 without restraints) Performing minimization step: 180. Total energy = 50234.7738 kcal/mol (50177.3452 without restraints) Performing minimization step: 181. Total energy = 49830.4614 kcal/mol (49773.8927 without restraints) Performing minimization step: 182. Total energy = 49433.3424 kcal/mol (49377.6133 without restraints) Performing minimization step: 183. Total energy = 49043.2472 kcal/mol (48988.3380 without restraints) Performing minimization step: 184. Total energy = 48660.0110 kcal/mol (48605.9024 without restraints) Performing minimization step: 185. Total energy = 48283.4731 kcal/mol (48230.1465 without restraints) Performing minimization step: 186. Total energy = 47913.4775 kcal/mol (47860.9147 without restraints) Performing minimization step: 187. Total energy = 47549.8722 kcal/mol (47498.0556 without restraints) Performing minimization step: 188. Total energy = 47192.5096 kcal/mol (47141.4219 without restraints) Performing minimization step: 189. Total energy = 46841.2459 kcal/mol (46790.8705 without restraints) Performing minimization step: 190. Total energy = 46495.9411 kcal/mol (46446.2616 without restraints) Performing minimization step: 191. Total energy = 46156.4596 kcal/mol (46107.4602 without restraints) Performing minimization step: 192. Total energy = 45822.6687 kcal/mol (45774.3340 without restraints) Performing minimization step: 193. Total energy = 45494.4391 kcal/mol (45446.7541 without restraints) Performing minimization step: 194. Total energy = 45171.6460 kcal/mol (45124.5962 without restraints) Performing minimization step: 195. Total energy = 44854.1670 kcal/mol (44807.7379 without restraints) Performing minimization step: 196. Total energy = 44541.8829 kcal/mol (44496.0609 without restraints) Performing minimization step: 197. Total energy = 44234.6781 kcal/mol (44189.4495 without restraints) Performing minimization step: 198. Total energy = 43932.4397 kcal/mol (43887.7916 without restraints) Performing minimization step: 199. Total energy = 43635.0579 kcal/mol (43590.9775 without restraints) Performing minimization step: 200. Total energy = 43342.4256 kcal/mol (43298.9001 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 201. Total energy = 43054.4388 kcal/mol (43011.4565 without restraints) Performing minimization step: 202. Total energy = 42770.9961 kcal/mol (42728.5451 without restraints) Performing minimization step: 203. Total energy = 42491.9988 kcal/mol (42450.0674 without restraints) Performing minimization step: 204. Total energy = 42217.3502 kcal/mol (42175.9273 without restraints) Performing minimization step: 205. Total energy = 41946.9561 kcal/mol (41906.0308 without restraints) Performing minimization step: 206. Total energy = 41680.7254 kcal/mol (41640.2870 without restraints) Performing minimization step: 207. Total energy = 41418.5689 kcal/mol (41378.6070 without restraints) Performing minimization step: 208. Total energy = 41160.4002 kcal/mol (41120.9046 without restraints) Performing minimization step: 209. Total energy = 40906.1336 kcal/mol (40867.0946 without restraints) Performing minimization step: 210. Total energy = 40655.6868 kcal/mol (40617.0947 without restraints) Performing minimization step: 211. Total energy = 40408.9798 kcal/mol (40370.8253 without restraints) Performing minimization step: 212. Total energy = 40165.9341 kcal/mol (40128.2080 without restraints) Performing minimization step: 213. Total energy = 39926.4728 kcal/mol (39889.1662 without restraints) Performing minimization step: 214. Total energy = 39690.5214 kcal/mol (39653.6256 without restraints) Performing minimization step: 215. Total energy = 39458.0072 kcal/mol (39421.5138 without restraints) Performing minimization step: 216. Total energy = 39228.8593 kcal/mol (39192.7600 without restraints) Performing minimization step: 217. Total energy = 39003.0088 kcal/mol (38967.2955 without restraints) Performing minimization step: 218. Total energy = 38780.3875 kcal/mol (38745.0523 without restraints) Performing minimization step: 219. Total energy = 38560.9298 kcal/mol (38525.9651 without restraints) Performing minimization step: 220. Total energy = 38344.5714 kcal/mol (38309.9698 without restraints) Performing minimization step: 221. Total energy = 38131.2500 kcal/mol (38097.0041 without restraints) Performing minimization step: 222. Total energy = 37920.9043 kcal/mol (37887.0069 without restraints) Performing minimization step: 223. Total energy = 37713.4748 kcal/mol (37679.9190 without restraints) Performing minimization step: 224. Total energy = 37508.9027 kcal/mol (37475.6819 without restraints) Performing minimization step: 225. Total energy = 37307.1317 kcal/mol (37274.2391 without restraints) Performing minimization step: 226. Total energy = 37108.1061 kcal/mol (37075.5353 without restraints) Performing minimization step: 227. Total energy = 36911.7719 kcal/mol (36879.5165 without restraints) Performing minimization step: 228. Total energy = 36718.0761 kcal/mol (36686.1300 without restraints) Performing minimization step: 229. Total energy = 36526.9673 kcal/mol (36495.3245 without restraints) Performing minimization step: 230. Total energy = 36338.3952 kcal/mol (36307.0499 without restraints) Performing minimization step: 231. Total energy = 36152.3104 kcal/mol (36121.2568 without restraints) Performing minimization step: 232. Total energy = 35968.6647 kcal/mol (35937.8973 without restraints) Performing minimization step: 233. Total energy = 35787.4120 kcal/mol (35756.9253 without restraints) Performing minimization step: 234. Total energy = 35608.5060 kcal/mol (35578.2946 without restraints) Performing minimization step: 235. Total energy = 35431.9022 kcal/mol (35401.9609 without restraints) Performing minimization step: 236. Total energy = 35257.5566 kcal/mol (35227.8803 without restraints) Performing minimization step: 237. Total energy = 35085.4264 kcal/mol (35056.0102 without restraints) Performing minimization step: 238. Total energy = 34915.4706 kcal/mol (34886.3096 without restraints) Performing minimization step: 239. Total energy = 34747.6483 kcal/mol (34718.7378 without restraints) Performing minimization step: 240. Total energy = 34581.9196 kcal/mol (34553.2549 without restraints) Performing minimization step: 241. Total energy = 34418.2457 kcal/mol (34389.8224 without restraints) Performing minimization step: 242. Total energy = 34256.5887 kcal/mol (34228.4023 without restraints) Performing minimization step: 243. Total energy = 34096.9114 kcal/mol (34068.9576 without restraints) Performing minimization step: 244. Total energy = 33939.1778 kcal/mol (33911.4524 without restraints) Performing minimization step: 245. Total energy = 33783.3520 kcal/mol (33755.8509 without restraints) Performing minimization step: 246. Total energy = 33629.3999 kcal/mol (33602.1188 without restraints) Performing minimization step: 247. Total energy = 33477.2872 kcal/mol (33450.2224 without restraints) Performing minimization step: 248. Total energy = 33326.9810 kcal/mol (33300.1286 without restraints) Performing minimization step: 249. Total energy = 33178.4492 kcal/mol (33151.8054 without restraints) Performing minimization step: 250. Total energy = 33031.6597 kcal/mol (33005.2209 without restraints) Performing minimization step: 251. Total energy = 32886.5824 kcal/mol (32860.3450 without restraints) Performing minimization step: 252. Total energy = 32743.1858 kcal/mol (32717.1461 without restraints) Performing minimization step: 253. Total energy = 32601.4404 kcal/mol (32575.5950 without restraints) Performing minimization step: 254. Total energy = 32461.3186 kcal/mol (32435.6644 without restraints) Performing minimization step: 255. Total energy = 32322.7913 kcal/mol (32297.3248 without restraints) Performing minimization step: 256. Total energy = 32185.8313 kcal/mol (32160.5493 without restraints) Performing minimization step: 257. Total energy = 32050.4108 kcal/mol (32025.3102 without restraints) Performing minimization step: 258. Total energy = 31916.5037 kcal/mol (31891.5813 without restraints) Performing minimization step: 259. Total energy = 31784.0840 kcal/mol (31759.3369 without restraints) Performing minimization step: 260. Total energy = 31653.1263 kcal/mol (31628.5515 without restraints) Performing minimization step: 261. Total energy = 31523.6060 kcal/mol (31499.2007 without restraints) Performing minimization step: 262. Total energy = 31395.4990 kcal/mol (31371.2601 without restraints) Performing minimization step: 263. Total energy = 31268.7812 kcal/mol (31244.7061 without restraints) Performing minimization step: 264. Total energy = 31143.4293 kcal/mol (31119.5154 without restraints) Performing minimization step: 265. Total energy = 31019.4208 kcal/mol (30995.6653 without restraints) Performing minimization step: 266. Total energy = 30896.7333 kcal/mol (30873.1337 without restraints) Performing minimization step: 267. Total energy = 30775.3453 kcal/mol (30751.8989 without restraints) Performing minimization step: 268. Total energy = 30655.2348 kcal/mol (30631.9393 without restraints) Performing minimization step: 269. Total energy = 30536.3814 kcal/mol (30513.2342 without restraints) Performing minimization step: 270. Total energy = 30418.7643 kcal/mol (30395.7632 without restraints) Performing minimization step: 271. Total energy = 30302.3639 kcal/mol (30279.5065 without restraints) Performing minimization step: 272. Total energy = 30187.1601 kcal/mol (30164.4441 without restraints) Performing minimization step: 273. Total energy = 30073.1338 kcal/mol (30050.5568 without restraints) Performing minimization step: 274. Total energy = 29960.2661 kcal/mol (29937.8261 without restraints) Performing minimization step: 275. Total energy = 29848.5390 kcal/mol (29826.2339 without restraints) Performing minimization step: 276. Total energy = 29737.9340 kcal/mol (29715.7615 without restraints) Performing minimization step: 277. Total energy = 29628.4332 kcal/mol (29606.3913 without restraints) Performing minimization step: 278. Total energy = 29520.0199 kcal/mol (29498.1067 without restraints) Performing minimization step: 279. Total energy = 29412.6766 kcal/mol (29390.8900 without restraints) Performing minimization step: 280. Total energy = 29306.3865 kcal/mol (29284.7247 without restraints) Performing minimization step: 281. Total energy = 29201.1338 kcal/mol (29179.5948 without restraints) Performing minimization step: 282. Total energy = 29096.9026 kcal/mol (29075.4844 without restraints) Performing minimization step: 283. Total energy = 28993.6766 kcal/mol (28972.3776 without restraints) Performing minimization step: 284. Total energy = 28891.4406 kcal/mol (28870.2589 without restraints) Performing minimization step: 285. Total energy = 28790.1795 kcal/mol (28769.1134 without restraints) Performing minimization step: 286. Total energy = 28689.8792 kcal/mol (28668.9269 without restraints) Performing minimization step: 287. Total energy = 28590.5241 kcal/mol (28569.6839 without restraints) Performing minimization step: 288. Total energy = 28492.1007 kcal/mol (28471.3710 without restraints) Performing minimization step: 289. Total energy = 28394.5946 kcal/mol (28373.9738 without restraints) Performing minimization step: 290. Total energy = 28297.9923 kcal/mol (28277.4787 without restraints) Performing minimization step: 291. Total energy = 28202.2807 kcal/mol (28181.8729 without restraints) Performing minimization step: 292. Total energy = 28107.4463 kcal/mol (28087.1427 without restraints) Performing minimization step: 293. Total energy = 28013.4763 kcal/mol (27993.2754 without restraints) Performing minimization step: 294. Total energy = 27920.3581 kcal/mol (27900.2584 without restraints) Performing minimization step: 295. Total energy = 27828.0794 kcal/mol (27808.0795 without restraints) Performing minimization step: 296. Total energy = 27736.6283 kcal/mol (27716.7267 without restraints) Performing minimization step: 297. Total energy = 27645.9918 kcal/mol (27626.1872 without restraints) Performing minimization step: 298. Total energy = 27556.1588 kcal/mol (27536.4498 without restraints) Performing minimization step: 299. Total energy = 27467.1177 kcal/mol (27447.5030 without restraints) Performing minimization step: 300. Total energy = 27378.8573 kcal/mol (27359.3356 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 301. Total energy = 27291.3665 kcal/mol (27271.9364 without restraints) Performing minimization step: 302. Total energy = 27204.6344 kcal/mol (27185.2946 without restraints) Performing minimization step: 303. Total energy = 27118.6502 kcal/mol (27099.3996 without restraints) Performing minimization step: 304. Total energy = 27033.4035 kcal/mol (27014.2408 without restraints) Performing minimization step: 305. Total energy = 26948.8844 kcal/mol (26929.8087 without restraints) Performing minimization step: 306. Total energy = 26865.0822 kcal/mol (26846.0919 without restraints) Performing minimization step: 307. Total energy = 26781.9870 kcal/mol (26763.0810 without restraints) Performing minimization step: 308. Total energy = 26699.5891 kcal/mol (26680.7663 without restraints) Performing minimization step: 309. Total energy = 26617.8785 kcal/mol (26599.1379 without restraints) Performing minimization step: 310. Total energy = 26536.8468 kcal/mol (26518.1873 without restraints) Performing minimization step: 311. Total energy = 26456.4844 kcal/mol (26437.9049 without restraints) Performing minimization step: 312. Total energy = 26376.7819 kcal/mol (26358.2813 without restraints) Performing minimization step: 313. Total energy = 26297.7307 kcal/mol (26279.3078 without restraints) Performing minimization step: 314. Total energy = 26219.3215 kcal/mol (26200.9756 without restraints) Performing minimization step: 315. Total energy = 26141.5462 kcal/mol (26123.2762 without restraints) Performing minimization step: 316. Total energy = 26064.3965 kcal/mol (26046.2013 without restraints) Performing minimization step: 317. Total energy = 25987.8635 kcal/mol (25969.7422 without restraints) Performing minimization step: 318. Total energy = 25911.9391 kcal/mol (25893.8907 without restraints) Performing minimization step: 319. Total energy = 25836.6155 kcal/mol (25818.6392 without restraints) Performing minimization step: 320. Total energy = 25761.8848 kcal/mol (25743.9796 without restraints) Performing minimization step: 321. Total energy = 25687.7389 kcal/mol (25669.9040 without restraints) Performing minimization step: 322. Total energy = 25614.1708 kcal/mol (25596.4052 without restraints) Performing minimization step: 323. Total energy = 25541.1727 kcal/mol (25523.4756 without restraints) Performing minimization step: 324. Total energy = 25468.7371 kcal/mol (25451.1075 without restraints) Performing minimization step: 325. Total energy = 25396.8565 kcal/mol (25379.2937 without restraints) Performing minimization step: 326. Total energy = 25325.5244 kcal/mol (25308.0275 without restraints) Performing minimization step: 327. Total energy = 25254.7335 kcal/mol (25237.3017 without restraints) Performing minimization step: 328. Total energy = 25184.4764 kcal/mol (25167.1090 without restraints) Performing minimization step: 329. Total energy = 25114.7474 kcal/mol (25097.4435 without restraints) Performing minimization step: 330. Total energy = 25045.5391 kcal/mol (25028.2978 without restraints) Performing minimization step: 331. Total energy = 24976.8450 kcal/mol (24959.6658 without restraints) Performing minimization step: 332. Total energy = 24908.6589 kcal/mol (24891.5409 without restraints) Performing minimization step: 333. Total energy = 24840.9740 kcal/mol (24823.9165 without restraints) Performing minimization step: 334. Total energy = 24773.7845 kcal/mol (24756.7869 without restraints) Performing minimization step: 335. Total energy = 24707.0843 kcal/mol (24690.1457 without restraints) Performing minimization step: 336. Total energy = 24640.8670 kcal/mol (24623.9867 without restraints) Performing minimization step: 337. Total energy = 24575.1269 kcal/mol (24558.3044 without restraints) Performing minimization step: 338. Total energy = 24509.8578 kcal/mol (24493.0923 without restraints) Performing minimization step: 339. Total energy = 24445.0545 kcal/mol (24428.3452 without restraints) Performing minimization step: 340. Total energy = 24380.7106 kcal/mol (24364.0569 without restraints) Performing minimization step: 341. Total energy = 24316.8207 kcal/mol (24300.2222 without restraints) Performing minimization step: 342. Total energy = 24253.3799 kcal/mol (24236.8358 without restraints) Performing minimization step: 343. Total energy = 24190.3824 kcal/mol (24173.8921 without restraints) Performing minimization step: 344. Total energy = 24127.8229 kcal/mol (24111.3857 without restraints) Performing minimization step: 345. Total energy = 24065.6964 kcal/mol (24049.3117 without restraints) Performing minimization step: 346. Total energy = 24003.9972 kcal/mol (23987.6645 without restraints) Performing minimization step: 347. Total energy = 23942.7209 kcal/mol (23926.4395 without restraints) Performing minimization step: 348. Total energy = 23881.8617 kcal/mol (23865.6312 without restraints) Performing minimization step: 349. Total energy = 23821.4152 kcal/mol (23805.2348 without restraints) Performing minimization step: 350. Total energy = 23761.3764 kcal/mol (23745.2457 without restraints) Performing minimization step: 351. Total energy = 23701.7407 kcal/mol (23685.6592 without restraints) Performing minimization step: 352. Total energy = 23642.5028 kcal/mol (23626.4697 without restraints) Performing minimization step: 353. Total energy = 23583.6588 kcal/mol (23567.6737 without restraints) Performing minimization step: 354. Total energy = 23525.2039 kcal/mol (23509.2663 without restraints) Performing minimization step: 355. Total energy = 23467.1336 kcal/mol (23451.2430 without restraints) Performing minimization step: 356. Total energy = 23409.4434 kcal/mol (23393.5993 without restraints) Performing minimization step: 357. Total energy = 23352.1291 kcal/mol (23336.3309 without restraints) Performing minimization step: 358. Total energy = 23295.1862 kcal/mol (23279.4335 without restraints) Performing minimization step: 359. Total energy = 23238.6106 kcal/mol (23222.9029 without restraints) Performing minimization step: 360. Total energy = 23182.3985 kcal/mol (23166.7352 without restraints) Performing minimization step: 361. Total energy = 23126.5446 kcal/mol (23110.9254 without restraints) Performing minimization step: 362. Total energy = 23071.0460 kcal/mol (23055.4703 without restraints) Performing minimization step: 363. Total energy = 23015.8984 kcal/mol (23000.3658 without restraints) Performing minimization step: 364. Total energy = 22961.0980 kcal/mol (22945.6080 without restraints) Performing minimization step: 365. Total energy = 22906.6405 kcal/mol (22891.1928 without restraints) Performing minimization step: 366. Total energy = 22852.5225 kcal/mol (22837.1164 without restraints) Performing minimization step: 367. Total energy = 22798.7400 kcal/mol (22783.3752 without restraints) Performing minimization step: 368. Total energy = 22745.2891 kcal/mol (22729.9651 without restraints) Performing minimization step: 369. Total energy = 22692.1666 kcal/mol (22676.8833 without restraints) Performing minimization step: 370. Total energy = 22639.3683 kcal/mol (22624.1249 without restraints) Performing minimization step: 371. Total energy = 22586.8914 kcal/mol (22571.6878 without restraints) Performing minimization step: 372. Total energy = 22534.7322 kcal/mol (22519.5677 without restraints) Performing minimization step: 373. Total energy = 22482.8871 kcal/mol (22467.7616 without restraints) Performing minimization step: 374. Total energy = 22431.3525 kcal/mol (22416.2653 without restraints) Performing minimization step: 375. Total energy = 22380.1253 kcal/mol (22365.0761 without restraints) Performing minimization step: 376. Total energy = 22329.2021 kcal/mol (22314.1906 without restraints) Performing minimization step: 377. Total energy = 22278.5797 kcal/mol (22263.6055 without restraints) Performing minimization step: 378. Total energy = 22228.2548 kcal/mol (22213.3176 without restraints) Performing minimization step: 379. Total energy = 22178.2244 kcal/mol (22163.3237 without restraints) Performing minimization step: 380. Total energy = 22128.4847 kcal/mol (22113.6203 without restraints) Performing minimization step: 381. Total energy = 22079.0337 kcal/mol (22064.2051 without restraints) Performing minimization step: 382. Total energy = 22029.8673 kcal/mol (22015.0742 without restraints) Performing minimization step: 383. Total energy = 21980.9835 kcal/mol (21966.2256 without restraints) Performing minimization step: 384. Total energy = 21932.3785 kcal/mol (21917.6554 without restraints) Performing minimization step: 385. Total energy = 21884.0500 kcal/mol (21869.3613 without restraints) Performing minimization step: 386. Total energy = 21835.9949 kcal/mol (21821.3404 without restraints) Performing minimization step: 387. Total energy = 21788.2103 kcal/mol (21773.5897 without restraints) Performing minimization step: 388. Total energy = 21740.6936 kcal/mol (21726.1064 without restraints) Performing minimization step: 389. Total energy = 21693.4418 kcal/mol (21678.8879 without restraints) Performing minimization step: 390. Total energy = 21646.4522 kcal/mol (21631.9312 without restraints) Performing minimization step: 391. Total energy = 21599.7218 kcal/mol (21585.2332 without restraints) Performing minimization step: 392. Total energy = 21553.2488 kcal/mol (21538.7927 without restraints) Performing minimization step: 393. Total energy = 21507.0300 kcal/mol (21492.6058 without restraints) Performing minimization step: 394. Total energy = 21461.0624 kcal/mol (21446.6698 without restraints) Performing minimization step: 395. Total energy = 21415.3447 kcal/mol (21400.9835 without restraints) Performing minimization step: 396. Total energy = 21369.8735 kcal/mol (21355.5433 without restraints) Performing minimization step: 397. Total energy = 21324.6462 kcal/mol (21310.3471 without restraints) Performing minimization step: 398. Total energy = 21279.6607 kcal/mol (21265.3919 without restraints) Performing minimization step: 399. Total energy = 21234.9144 kcal/mol (21220.6758 without restraints) Performing minimization step: 400. Total energy = 21190.4049 kcal/mol (21176.1964 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 401. Total energy = 21146.1300 kcal/mol (21131.9512 without restraints) Performing minimization step: 402. Total energy = 21102.0873 kcal/mol (21087.9379 without restraints) Performing minimization step: 403. Total energy = 21058.2745 kcal/mol (21044.1543 without restraints) Performing minimization step: 404. Total energy = 21014.6897 kcal/mol (21000.5984 without restraints) Performing minimization step: 405. Total energy = 20971.3297 kcal/mol (20957.2669 without restraints) Performing minimization step: 406. Total energy = 20928.1930 kcal/mol (20914.1588 without restraints) Performing minimization step: 407. Total energy = 20885.2775 kcal/mol (20871.2714 without restraints) Performing minimization step: 408. Total energy = 20842.5809 kcal/mol (20828.6027 without restraints) Performing minimization step: 409. Total energy = 20800.1014 kcal/mol (20786.1509 without restraints) Performing minimization step: 410. Total energy = 20757.8362 kcal/mol (20743.9131 without restraints) Performing minimization step: 411. Total energy = 20715.7835 kcal/mol (20701.8877 without restraints) Performing minimization step: 412. Total energy = 20673.9414 kcal/mol (20660.0724 without restraints) Performing minimization step: 413. Total energy = 20632.3077 kcal/mol (20618.4656 without restraints) Performing minimization step: 414. Total energy = 20590.8809 kcal/mol (20577.0651 without restraints) Performing minimization step: 415. Total energy = 20549.6583 kcal/mol (20535.8692 without restraints) Performing minimization step: 416. Total energy = 20508.6386 kcal/mol (20494.8751 without restraints) Performing minimization step: 417. Total energy = 20467.8194 kcal/mol (20454.0819 without restraints) Performing minimization step: 418. Total energy = 20427.1992 kcal/mol (20413.4874 without restraints) Performing minimization step: 419. Total energy = 20386.7761 kcal/mol (20373.0898 without restraints) Performing minimization step: 420. Total energy = 20346.5482 kcal/mol (20332.8871 without restraints) Performing minimization step: 421. Total energy = 20306.5134 kcal/mol (20292.8773 without restraints) Performing minimization step: 422. Total energy = 20266.6702 kcal/mol (20253.0587 without restraints) Performing minimization step: 423. Total energy = 20227.0165 kcal/mol (20213.4297 without restraints) Performing minimization step: 424. Total energy = 20187.5510 kcal/mol (20173.9887 without restraints) Performing minimization step: 425. Total energy = 20148.2716 kcal/mol (20134.7335 without restraints) Performing minimization step: 426. Total energy = 20109.1768 kcal/mol (20095.6626 without restraints) Performing minimization step: 427. Total energy = 20070.2645 kcal/mol (20056.7741 without restraints) Performing minimization step: 428. Total energy = 20031.5335 kcal/mol (20018.0668 without restraints) Performing minimization step: 429. Total energy = 19992.9819 kcal/mol (19979.5386 without restraints) Performing minimization step: 430. Total energy = 19954.6085 kcal/mol (19941.1886 without restraints) Performing minimization step: 431. Total energy = 19916.4111 kcal/mol (19903.0140 without restraints) Performing minimization step: 432. Total energy = 19878.3887 kcal/mol (19865.0148 without restraints) Performing minimization step: 433. Total energy = 19840.5396 kcal/mol (19827.1885 without restraints) Performing minimization step: 434. Total energy = 19802.8622 kcal/mol (19789.5333 without restraints) Performing minimization step: 435. Total energy = 19765.3541 kcal/mol (19752.0476 without restraints) Performing minimization step: 436. Total energy = 19728.0148 kcal/mol (19714.7307 without restraints) Performing minimization step: 437. Total energy = 19690.8427 kcal/mol (19677.5804 without restraints) Performing minimization step: 438. Total energy = 19653.8357 kcal/mol (19640.5953 without restraints) Performing minimization step: 439. Total energy = 19616.9931 kcal/mol (19603.7744 without restraints) Performing minimization step: 440. Total energy = 19580.3130 kcal/mol (19567.1159 without restraints) Performing minimization step: 441. Total energy = 19543.7940 kcal/mol (19530.6182 without restraints) Performing minimization step: 442. Total energy = 19507.4347 kcal/mol (19494.2801 without restraints) Performing minimization step: 443. Total energy = 19471.2340 kcal/mol (19458.1004 without restraints) Performing minimization step: 444. Total energy = 19435.1907 kcal/mol (19422.0781 without restraints) Performing minimization step: 445. Total energy = 19399.3032 kcal/mol (19386.2113 without restraints) Performing minimization step: 446. Total energy = 19363.5693 kcal/mol (19350.4980 without restraints) Performing minimization step: 447. Total energy = 19327.9888 kcal/mol (19314.9380 without restraints) Performing minimization step: 448. Total energy = 19292.5597 kcal/mol (19279.5292 without restraints) Performing minimization step: 449. Total energy = 19257.2813 kcal/mol (19244.2711 without restraints) Performing minimization step: 450. Total energy = 19222.1517 kcal/mol (19209.1612 without restraints) Performing minimization step: 451. Total energy = 19187.1701 kcal/mol (19174.1995 without restraints) Performing minimization step: 452. Total energy = 19152.3353 kcal/mol (19139.3845 without restraints) Performing minimization step: 453. Total energy = 19117.6457 kcal/mol (19104.7144 without restraints) Performing minimization step: 454. Total energy = 19083.1003 kcal/mol (19070.1886 without restraints) Performing minimization step: 455. Total energy = 19048.6979 kcal/mol (19035.8054 without restraints) Performing minimization step: 456. Total energy = 19014.4365 kcal/mol (19001.5632 without restraints) Performing minimization step: 457. Total energy = 18980.3161 kcal/mol (18967.4618 without restraints) Performing minimization step: 458. Total energy = 18946.3354 kcal/mol (18933.5002 without restraints) Performing minimization step: 459. Total energy = 18912.4931 kcal/mol (18899.6765 without restraints) Performing minimization step: 460. Total energy = 18878.7879 kcal/mol (18865.9900 without restraints) Performing minimization step: 461. Total energy = 18845.2183 kcal/mol (18832.4389 without restraints) Performing minimization step: 462. Total energy = 18811.7838 kcal/mol (18799.0228 without restraints) Performing minimization step: 463. Total energy = 18778.4830 kcal/mol (18765.7403 without restraints) Performing minimization step: 464. Total energy = 18745.3149 kcal/mol (18732.5904 without restraints) Performing minimization step: 465. Total energy = 18712.2787 kcal/mol (18699.5722 without restraints) Performing minimization step: 466. Total energy = 18679.3726 kcal/mol (18666.6841 without restraints) Performing minimization step: 467. Total energy = 18646.5962 kcal/mol (18633.9255 without restraints) Performing minimization step: 468. Total energy = 18613.9484 kcal/mol (18601.2955 without restraints) Performing minimization step: 469. Total energy = 18581.4280 kcal/mol (18568.7925 without restraints) Performing minimization step: 470. Total energy = 18549.0339 kcal/mol (18536.4159 without restraints) Performing minimization step: 471. Total energy = 18516.7652 kcal/mol (18504.1644 without restraints) Performing minimization step: 472. Total energy = 18484.6207 kcal/mol (18472.0372 without restraints) Performing minimization step: 473. Total energy = 18452.5999 kcal/mol (18440.0336 without restraints) Performing minimization step: 474. Total energy = 18420.7017 kcal/mol (18408.1524 without restraints) Performing minimization step: 475. Total energy = 18388.9245 kcal/mol (18376.3921 without restraints) Performing minimization step: 476. Total energy = 18357.2684 kcal/mol (18344.7528 without restraints) Performing minimization step: 477. Total energy = 18325.7321 kcal/mol (18313.2332 without restraints) Performing minimization step: 478. Total energy = 18294.3143 kcal/mol (18281.8320 without restraints) Performing minimization step: 479. Total energy = 18263.0146 kcal/mol (18250.5489 without restraints) Performing minimization step: 480. Total energy = 18231.8315 kcal/mol (18219.3821 without restraints) Performing minimization step: 481. Total energy = 18200.7641 kcal/mol (18188.3310 without restraints) Performing minimization step: 482. Total energy = 18169.8128 kcal/mol (18157.3958 without restraints) Performing minimization step: 483. Total energy = 18138.9748 kcal/mol (18126.5740 without restraints) Performing minimization step: 484. Total energy = 18108.2504 kcal/mol (18095.8656 without restraints) Performing minimization step: 485. Total energy = 18077.6383 kcal/mol (18065.2693 without restraints) Performing minimization step: 486. Total energy = 18047.1385 kcal/mol (18034.7854 without restraints) Performing minimization step: 487. Total energy = 18016.7488 kcal/mol (18004.4113 without restraints) Performing minimization step: 488. Total energy = 17986.4691 kcal/mol (17974.1474 without restraints) Performing minimization step: 489. Total energy = 17956.2990 kcal/mol (17943.9928 without restraints) Performing minimization step: 490. Total energy = 17926.2372 kcal/mol (17913.9465 without restraints) Performing minimization step: 491. Total energy = 17896.2830 kcal/mol (17884.0076 without restraints) Performing minimization step: 492. Total energy = 17866.4364 kcal/mol (17854.1761 without restraints) Performing minimization step: 493. Total energy = 17836.6946 kcal/mol (17824.4496 without restraints) Performing minimization step: 494. Total energy = 17807.0585 kcal/mol (17794.8287 without restraints) Performing minimization step: 495. Total energy = 17777.5267 kcal/mol (17765.3118 without restraints) Performing minimization step: 496. Total energy = 17748.0984 kcal/mol (17735.8984 without restraints) Performing minimization step: 497. Total energy = 17718.7730 kcal/mol (17706.5879 without restraints) Performing minimization step: 498. Total energy = 17689.5510 kcal/mol (17677.3806 without restraints) Performing minimization step: 499. Total energy = 17660.4297 kcal/mol (17648.2741 without restraints) Performing minimization step: 500. Total energy = 17631.4091 kcal/mol (17619.2680 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 501. Total energy = 17602.4886 kcal/mol (17590.3621 without restraints) Performing minimization step: 502. Total energy = 17573.6672 kcal/mol (17561.5551 without restraints) Performing minimization step: 503. Total energy = 17544.9445 kcal/mol (17532.8468 without restraints) Performing minimization step: 504. Total energy = 17516.3199 kcal/mol (17504.2365 without restraints) Performing minimization step: 505. Total energy = 17487.7925 kcal/mol (17475.7234 without restraints) Performing minimization step: 506. Total energy = 17459.3618 kcal/mol (17447.3066 without restraints) Performing minimization step: 507. Total energy = 17431.0266 kcal/mol (17418.9856 without restraints) Performing minimization step: 508. Total energy = 17402.7876 kcal/mol (17390.7606 without restraints) Performing minimization step: 509. Total energy = 17374.6424 kcal/mol (17362.6292 without restraints) Performing minimization step: 510. Total energy = 17346.5911 kcal/mol (17334.5918 without restraints) Performing minimization step: 511. Total energy = 17318.6334 kcal/mol (17306.6480 without restraints) Performing minimization step: 512. Total energy = 17290.7680 kcal/mol (17278.7962 without restraints) Performing minimization step: 513. Total energy = 17262.9946 kcal/mol (17251.0364 without restraints) Performing minimization step: 514. Total energy = 17235.3127 kcal/mol (17223.3681 without restraints) Performing minimization step: 515. Total energy = 17207.7214 kcal/mol (17195.7903 without restraints) Performing minimization step: 516. Total energy = 17180.2206 kcal/mol (17168.3029 without restraints) Performing minimization step: 517. Total energy = 17152.8084 kcal/mol (17140.9041 without restraints) Performing minimization step: 518. Total energy = 17125.4853 kcal/mol (17113.5943 without restraints) Performing minimization step: 519. Total energy = 17098.2512 kcal/mol (17086.3734 without restraints) Performing minimization step: 520. Total energy = 17071.1046 kcal/mol (17059.2399 without restraints) Performing minimization step: 521. Total energy = 17044.0454 kcal/mol (17032.1938 without restraints) Performing minimization step: 522. Total energy = 17017.0730 kcal/mol (17005.2345 without restraints) Performing minimization step: 523. Total energy = 16990.1865 kcal/mol (16978.3609 without restraints) Performing minimization step: 524. Total energy = 16963.3854 kcal/mol (16951.5728 without restraints) Performing minimization step: 525. Total energy = 16936.6690 kcal/mol (16924.8693 without restraints) Performing minimization step: 526. Total energy = 16910.0373 kcal/mol (16898.2503 without restraints) Performing minimization step: 527. Total energy = 16883.4894 kcal/mol (16871.7152 without restraints) Performing minimization step: 528. Total energy = 16857.0251 kcal/mol (16845.2635 without restraints) Performing minimization step: 529. Total energy = 16830.6431 kcal/mol (16818.8941 without restraints) Performing minimization step: 530. Total energy = 16804.3434 kcal/mol (16792.6069 without restraints) Performing minimization step: 531. Total energy = 16778.1252 kcal/mol (16766.4013 without restraints) Performing minimization step: 532. Total energy = 16751.9889 kcal/mol (16740.2774 without restraints) Performing minimization step: 533. Total energy = 16725.9325 kcal/mol (16714.2335 without restraints) Performing minimization step: 534. Total energy = 16699.9569 kcal/mol (16688.2702 without restraints) Performing minimization step: 535. Total energy = 16674.0611 kcal/mol (16662.3866 without restraints) Performing minimization step: 536. Total energy = 16648.2444 kcal/mol (16636.5822 without restraints) Performing minimization step: 537. Total energy = 16622.5067 kcal/mol (16610.8566 without restraints) Performing minimization step: 538. Total energy = 16596.8469 kcal/mol (16585.2090 without restraints) Performing minimization step: 539. Total energy = 16571.2649 kcal/mol (16559.6391 without restraints) Performing minimization step: 540. Total energy = 16545.7602 kcal/mol (16534.1464 without restraints) Performing minimization step: 541. Total energy = 16520.3326 kcal/mol (16508.7307 without restraints) Performing minimization step: 542. Total energy = 16494.9813 kcal/mol (16483.3913 without restraints) Performing minimization step: 543. Total energy = 16469.7056 kcal/mol (16458.1275 without restraints) Performing minimization step: 544. Total energy = 16444.5056 kcal/mol (16432.9392 without restraints) Performing minimization step: 545. Total energy = 16419.3799 kcal/mol (16407.8254 without restraints) Performing minimization step: 546. Total energy = 16394.3291 kcal/mol (16382.7862 without restraints) Performing minimization step: 547. Total energy = 16369.3526 kcal/mol (16357.8215 without restraints) Performing minimization step: 548. Total energy = 16344.4497 kcal/mol (16332.9301 without restraints) Performing minimization step: 549. Total energy = 16319.6204 kcal/mol (16308.1124 without restraints) Performing minimization step: 550. Total energy = 16294.8634 kcal/mol (16283.3669 without restraints) Performing minimization step: 551. Total energy = 16270.1789 kcal/mol (16258.6938 without restraints) Performing minimization step: 552. Total energy = 16245.5661 kcal/mol (16234.0925 without restraints) Performing minimization step: 553. Total energy = 16221.0251 kcal/mol (16209.5627 without restraints) Performing minimization step: 554. Total energy = 16196.5550 kcal/mol (16185.1042 without restraints) Performing minimization step: 555. Total energy = 16172.1557 kcal/mol (16160.7161 without restraints) Performing minimization step: 556. Total energy = 16147.8268 kcal/mol (16136.3985 without restraints) Performing minimization step: 557. Total energy = 16123.5678 kcal/mol (16112.1507 without restraints) Performing minimization step: 558. Total energy = 16099.3784 kcal/mol (16087.9726 without restraints) Performing minimization step: 559. Total energy = 16075.2582 kcal/mol (16063.8634 without restraints) Performing minimization step: 560. Total energy = 16051.2073 kcal/mol (16039.8235 without restraints) Performing minimization step: 561. Total energy = 16027.2241 kcal/mol (16015.8515 without restraints) Performing minimization step: 562. Total energy = 16003.3090 kcal/mol (15991.9472 without restraints) Performing minimization step: 563. Total energy = 15979.4608 kcal/mol (15968.1100 without restraints) Performing minimization step: 564. Total energy = 15955.6808 kcal/mol (15944.3409 without restraints) Performing minimization step: 565. Total energy = 15931.9671 kcal/mol (15920.6381 without restraints) Performing minimization step: 566. Total energy = 15908.3197 kcal/mol (15897.0015 without restraints) Performing minimization step: 567. Total energy = 15884.7386 kcal/mol (15873.4312 without restraints) Performing minimization step: 568. Total energy = 15861.2233 kcal/mol (15849.9266 without restraints) Performing minimization step: 569. Total energy = 15837.7734 kcal/mol (15826.4874 without restraints) Performing minimization step: 570. Total energy = 15814.3888 kcal/mol (15803.1135 without restraints) Performing minimization step: 571. Total energy = 15791.0687 kcal/mol (15779.8040 without restraints) Performing minimization step: 572. Total energy = 15767.8131 kcal/mol (15756.5590 without restraints) Performing minimization step: 573. Total energy = 15744.6211 kcal/mol (15733.3776 without restraints) Performing minimization step: 574. Total energy = 15721.4932 kcal/mol (15710.2602 without restraints) Performing minimization step: 575. Total energy = 15698.4285 kcal/mol (15687.2060 without restraints) Performing minimization step: 576. Total energy = 15675.4274 kcal/mol (15664.2153 without restraints) Performing minimization step: 577. Total energy = 15652.4885 kcal/mol (15641.2868 without restraints) Performing minimization step: 578. Total energy = 15629.6123 kcal/mol (15618.4210 without restraints) Performing minimization step: 579. Total energy = 15606.7974 kcal/mol (15595.6164 without restraints) Performing minimization step: 580. Total energy = 15584.0447 kcal/mol (15572.8741 without restraints) Performing minimization step: 581. Total energy = 15561.3532 kcal/mol (15550.1928 without restraints) Performing minimization step: 582. Total energy = 15538.7225 kcal/mol (15527.5722 without restraints) Performing minimization step: 583. Total energy = 15516.1527 kcal/mol (15505.0127 without restraints) Performing minimization step: 584. Total energy = 15493.6436 kcal/mol (15482.5138 without restraints) Performing minimization step: 585. Total energy = 15471.1945 kcal/mol (15460.0748 without restraints) Performing minimization step: 586. Total energy = 15448.8054 kcal/mol (15437.6958 without restraints) Performing minimization step: 587. Total energy = 15426.4760 kcal/mol (15415.3766 without restraints) Performing minimization step: 588. Total energy = 15404.2061 kcal/mol (15393.1166 without restraints) Performing minimization step: 589. Total energy = 15381.9946 kcal/mol (15370.9152 without restraints) Performing minimization step: 590. Total energy = 15359.8419 kcal/mol (15348.7723 without restraints) Performing minimization step: 591. Total energy = 15337.7475 kcal/mol (15326.6879 without restraints) Performing minimization step: 592. Total energy = 15315.7114 kcal/mol (15304.6617 without restraints) Performing minimization step: 593. Total energy = 15293.7327 kcal/mol (15282.6929 without restraints) Performing minimization step: 594. Total energy = 15271.8118 kcal/mol (15260.7819 without restraints) Performing minimization step: 595. Total energy = 15249.9483 kcal/mol (15238.9283 without restraints) Performing minimization step: 596. Total energy = 15228.1417 kcal/mol (15217.1313 without restraints) Performing minimization step: 597. Total energy = 15206.3917 kcal/mol (15195.3911 without restraints) Performing minimization step: 598. Total energy = 15184.6983 kcal/mol (15173.7076 without restraints) Performing minimization step: 599. Total energy = 15163.0610 kcal/mol (15152.0798 without restraints) Performing minimization step: 600. Total energy = 15141.4796 kcal/mol (15130.5082 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 601. Total energy = 15119.9538 kcal/mol (15108.9919 without restraints) Performing minimization step: 602. Total energy = 15098.4833 kcal/mol (15087.5311 without restraints) Performing minimization step: 603. Total energy = 15077.0677 kcal/mol (15066.1250 without restraints) Performing minimization step: 604. Total energy = 15055.7068 kcal/mol (15044.7736 without restraints) Performing minimization step: 605. Total energy = 15034.4008 kcal/mol (15023.4771 without restraints) Performing minimization step: 606. Total energy = 15013.1493 kcal/mol (15002.2350 without restraints) Performing minimization step: 607. Total energy = 14991.9520 kcal/mol (14981.0474 without restraints) Performing minimization step: 608. Total energy = 14970.8084 kcal/mol (14959.9131 without restraints) Performing minimization step: 609. Total energy = 14949.7185 kcal/mol (14938.8326 without restraints) Performing minimization step: 610. Total energy = 14928.6813 kcal/mol (14917.8049 without restraints) Performing minimization step: 611. Total energy = 14907.6977 kcal/mol (14896.8306 without restraints) Performing minimization step: 612. Total energy = 14886.7670 kcal/mol (14875.9093 without restraints) Performing minimization step: 613. Total energy = 14865.8889 kcal/mol (14855.0404 without restraints) Performing minimization step: 614. Total energy = 14845.0628 kcal/mol (14834.2236 without restraints) Performing minimization step: 615. Total energy = 14824.2893 kcal/mol (14813.4592 without restraints) Performing minimization step: 616. Total energy = 14803.5676 kcal/mol (14792.7469 without restraints) Performing minimization step: 617. Total energy = 14782.8980 kcal/mol (14772.0865 without restraints) Performing minimization step: 618. Total energy = 14762.2801 kcal/mol (14751.4777 without restraints) Performing minimization step: 619. Total energy = 14741.7129 kcal/mol (14730.9197 without restraints) Performing minimization step: 620. Total energy = 14721.1970 kcal/mol (14710.4129 without restraints) Performing minimization step: 621. Total energy = 14700.7316 kcal/mol (14689.9566 without restraints) Performing minimization step: 622. Total energy = 14680.3169 kcal/mol (14669.5508 without restraints) Performing minimization step: 623. Total energy = 14659.9523 kcal/mol (14649.1954 without restraints) Performing minimization step: 624. Total energy = 14639.6384 kcal/mol (14628.8905 without restraints) Performing minimization step: 625. Total energy = 14619.3745 kcal/mol (14608.6357 without restraints) Performing minimization step: 626. Total energy = 14599.1603 kcal/mol (14588.4304 without restraints) Performing minimization step: 627. Total energy = 14578.9948 kcal/mol (14568.2738 without restraints) Performing minimization step: 628. Total energy = 14558.8790 kcal/mol (14548.1670 without restraints) Performing minimization step: 629. Total energy = 14538.8129 kcal/mol (14528.1098 without restraints) Performing minimization step: 630. Total energy = 14518.7955 kcal/mol (14508.1013 without restraints) Performing minimization step: 631. Total energy = 14498.8264 kcal/mol (14488.1412 without restraints) Performing minimization step: 632. Total energy = 14478.9064 kcal/mol (14468.2299 without restraints) Performing minimization step: 633. Total energy = 14459.0350 kcal/mol (14448.3673 without restraints) Performing minimization step: 634. Total energy = 14439.2107 kcal/mol (14428.5518 without restraints) Performing minimization step: 635. Total energy = 14419.4346 kcal/mol (14408.7845 without restraints) Performing minimization step: 636. Total energy = 14399.7065 kcal/mol (14389.0651 without restraints) Performing minimization step: 637. Total energy = 14380.0257 kcal/mol (14369.3930 without restraints) Performing minimization step: 638. Total energy = 14360.3924 kcal/mol (14349.7685 without restraints) Performing minimization step: 639. Total energy = 14340.8063 kcal/mol (14330.1910 without restraints) Performing minimization step: 640. Total energy = 14321.2670 kcal/mol (14310.6604 without restraints) Performing minimization step: 641. Total energy = 14301.7744 kcal/mol (14291.1764 without restraints) Performing minimization step: 642. Total energy = 14282.3285 kcal/mol (14271.7392 without restraints) Performing minimization step: 643. Total energy = 14262.9290 kcal/mol (14252.3483 without restraints) Performing minimization step: 644. Total energy = 14243.5757 kcal/mol (14233.0035 without restraints) Performing minimization step: 645. Total energy = 14224.2682 kcal/mol (14213.7047 without restraints) Performing minimization step: 646. Total energy = 14205.0067 kcal/mol (14194.4517 without restraints) Performing minimization step: 647. Total energy = 14185.7909 kcal/mol (14175.2445 without restraints) Performing minimization step: 648. Total energy = 14166.6207 kcal/mol (14156.0828 without restraints) Performing minimization step: 649. Total energy = 14147.4960 kcal/mol (14136.9666 without restraints) Performing minimization step: 650. Total energy = 14128.4165 kcal/mol (14117.8955 without restraints) Performing minimization step: 651. Total energy = 14109.3815 kcal/mol (14098.8687 without restraints) Performing minimization step: 652. Total energy = 14090.3914 kcal/mol (14079.8872 without restraints) Performing minimization step: 653. Total energy = 14071.4463 kcal/mol (14060.9506 without restraints) Performing minimization step: 654. Total energy = 14052.5456 kcal/mol (14042.0582 without restraints) Performing minimization step: 655. Total energy = 14033.6890 kcal/mol (14023.2099 without restraints) Performing minimization step: 656. Total energy = 14014.8765 kcal/mol (14004.4058 without restraints) Performing minimization step: 657. Total energy = 13996.1081 kcal/mol (13985.6458 without restraints) Performing minimization step: 658. Total energy = 13977.3840 kcal/mol (13966.9301 without restraints) Performing minimization step: 659. Total energy = 13958.7028 kcal/mol (13948.2569 without restraints) Performing minimization step: 660. Total energy = 13940.0651 kcal/mol (13929.6274 without restraints) Performing minimization step: 661. Total energy = 13921.4705 kcal/mol (13911.0412 without restraints) Performing minimization step: 662. Total energy = 13902.9190 kcal/mol (13892.4978 without restraints) Performing minimization step: 663. Total energy = 13884.4106 kcal/mol (13873.9978 without restraints) Performing minimization step: 664. Total energy = 13865.9454 kcal/mol (13855.5410 without restraints) Performing minimization step: 665. Total energy = 13847.5226 kcal/mol (13837.1262 without restraints) Performing minimization step: 666. Total energy = 13829.1425 kcal/mol (13818.7542 without restraints) Performing minimization step: 667. Total energy = 13810.8054 kcal/mol (13800.4253 without restraints) Performing minimization step: 668. Total energy = 13792.5100 kcal/mol (13782.1380 without restraints) Performing minimization step: 669. Total energy = 13774.2568 kcal/mol (13763.8928 without restraints) Performing minimization step: 670. Total energy = 13756.0451 kcal/mol (13745.6893 without restraints) Performing minimization step: 671. Total energy = 13737.8750 kcal/mol (13727.5273 without restraints) Performing minimization step: 672. Total energy = 13719.7472 kcal/mol (13709.4076 without restraints) Performing minimization step: 673. Total energy = 13701.6606 kcal/mol (13691.3289 without restraints) Performing minimization step: 674. Total energy = 13683.6152 kcal/mol (13673.2915 without restraints) Performing minimization step: 675. Total energy = 13665.6109 kcal/mol (13655.2953 without restraints) Performing minimization step: 676. Total energy = 13647.6475 kcal/mol (13637.3399 without restraints) Performing minimization step: 677. Total energy = 13629.7254 kcal/mol (13619.4257 without restraints) Performing minimization step: 678. Total energy = 13611.8438 kcal/mol (13601.5521 without restraints) Performing minimization step: 679. Total energy = 13594.0031 kcal/mol (13583.7194 without restraints) Performing minimization step: 680. Total energy = 13576.2027 kcal/mol (13565.9269 without restraints) Performing minimization step: 681. Total energy = 13558.4428 kcal/mol (13548.1751 without restraints) Performing minimization step: 682. Total energy = 13540.7233 kcal/mol (13530.4633 without restraints) Performing minimization step: 683. Total energy = 13523.0435 kcal/mol (13512.7913 without restraints) Performing minimization step: 684. Total energy = 13505.4032 kcal/mol (13495.1588 without restraints) Performing minimization step: 685. Total energy = 13487.8031 kcal/mol (13477.5667 without restraints) Performing minimization step: 686. Total energy = 13470.2426 kcal/mol (13460.0140 without restraints) Performing minimization step: 687. Total energy = 13452.7216 kcal/mol (13442.5007 without restraints) Performing minimization step: 688. Total energy = 13435.2401 kcal/mol (13425.0271 without restraints) Performing minimization step: 689. Total energy = 13417.7977 kcal/mol (13407.5925 without restraints) Performing minimization step: 690. Total energy = 13400.3946 kcal/mol (13390.1971 without restraints) Performing minimization step: 691. Total energy = 13383.0304 kcal/mol (13372.8406 without restraints) Performing minimization step: 692. Total energy = 13365.7048 kcal/mol (13355.5228 without restraints) Performing minimization step: 693. Total energy = 13348.4182 kcal/mol (13338.2439 without restraints) Performing minimization step: 694. Total energy = 13331.1702 kcal/mol (13321.0036 without restraints) Performing minimization step: 695. Total energy = 13313.9606 kcal/mol (13303.8018 without restraints) Performing minimization step: 696. Total energy = 13296.7895 kcal/mol (13286.6382 without restraints) Performing minimization step: 697. Total energy = 13279.6565 kcal/mol (13269.5128 without restraints) Performing minimization step: 698. Total energy = 13262.5614 kcal/mol (13252.4254 without restraints) Performing minimization step: 699. Total energy = 13245.5043 kcal/mol (13235.3760 without restraints) Performing minimization step: 700. Total energy = 13228.4852 kcal/mol (13218.3644 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 701. Total energy = 13211.5047 kcal/mol (13201.3915 without restraints) Performing minimization step: 702. Total energy = 13194.5611 kcal/mol (13184.4555 without restraints) Performing minimization step: 703. Total energy = 13177.6550 kcal/mol (13167.5570 without restraints) Performing minimization step: 704. Total energy = 13160.7859 kcal/mol (13150.6954 without restraints) Performing minimization step: 705. Total energy = 13143.9544 kcal/mol (13133.8715 without restraints) Performing minimization step: 706. Total energy = 13127.1603 kcal/mol (13117.0849 without restraints) Performing minimization step: 707. Total energy = 13110.4031 kcal/mol (13100.3352 without restraints) Performing minimization step: 708. Total energy = 13093.6832 kcal/mol (13083.6228 without restraints) Performing minimization step: 709. Total energy = 13076.9996 kcal/mol (13066.9467 without restraints) Performing minimization step: 710. Total energy = 13060.3527 kcal/mol (13050.3072 without restraints) Performing minimization step: 711. Total energy = 13043.7424 kcal/mol (13033.7044 without restraints) Performing minimization step: 712. Total energy = 13027.1685 kcal/mol (13017.1379 without restraints) Performing minimization step: 713. Total energy = 13010.6307 kcal/mol (13000.6076 without restraints) Performing minimization step: 714. Total energy = 12994.1293 kcal/mol (12984.1135 without restraints) Performing minimization step: 715. Total energy = 12977.6641 kcal/mol (12967.6558 without restraints) Performing minimization step: 716. Total energy = 12961.2350 kcal/mol (12951.2339 without restraints) Performing minimization step: 717. Total energy = 12944.8417 kcal/mol (12934.8481 without restraints) Performing minimization step: 718. Total energy = 12928.4840 kcal/mol (12918.4978 without restraints) Performing minimization step: 719. Total energy = 12912.1622 kcal/mol (12902.1833 without restraints) Performing minimization step: 720. Total energy = 12895.8758 kcal/mol (12885.9042 without restraints) Performing minimization step: 721. Total energy = 12879.6251 kcal/mol (12869.6608 without restraints) Performing minimization step: 722. Total energy = 12863.4096 kcal/mol (12853.4527 without restraints) Performing minimization step: 723. Total energy = 12847.2290 kcal/mol (12837.2793 without restraints) Performing minimization step: 724. Total energy = 12831.0842 kcal/mol (12821.1418 without restraints) Performing minimization step: 725. Total energy = 12814.9743 kcal/mol (12805.0391 without restraints) Performing minimization step: 726. Total energy = 12798.8997 kcal/mol (12788.9718 without restraints) Performing minimization step: 727. Total energy = 12782.8593 kcal/mol (12772.9386 without restraints) Performing minimization step: 728. Total energy = 12766.8531 kcal/mol (12756.9397 without restraints) Performing minimization step: 729. Total energy = 12750.8822 kcal/mol (12740.9760 without restraints) Performing minimization step: 730. Total energy = 12734.9457 kcal/mol (12725.0467 without restraints) Performing minimization step: 731. Total energy = 12719.0439 kcal/mol (12709.1521 without restraints) Performing minimization step: 732. Total energy = 12703.1764 kcal/mol (12693.2917 without restraints) Performing minimization step: 733. Total energy = 12687.3435 kcal/mol (12677.4659 without restraints) Performing minimization step: 734. Total energy = 12671.5442 kcal/mol (12661.6739 without restraints) Performing minimization step: 735. Total energy = 12655.7791 kcal/mol (12645.9159 without restraints) Performing minimization step: 736. Total energy = 12640.0478 kcal/mol (12630.1917 without restraints) Performing minimization step: 737. Total energy = 12624.3503 kcal/mol (12614.5013 without restraints) Performing minimization step: 738. Total energy = 12608.6866 kcal/mol (12598.8447 without restraints) Performing minimization step: 739. Total energy = 12593.0562 kcal/mol (12583.2214 without restraints) Performing minimization step: 740. Total energy = 12577.4596 kcal/mol (12567.6319 without restraints) Performing minimization step: 741. Total energy = 12561.8965 kcal/mol (12552.0757 without restraints) Performing minimization step: 742. Total energy = 12546.3664 kcal/mol (12536.5527 without restraints) Performing minimization step: 743. Total energy = 12530.8704 kcal/mol (12521.0637 without restraints) Performing minimization step: 744. Total energy = 12515.4070 kcal/mol (12505.6075 without restraints) Performing minimization step: 745. Total energy = 12499.9769 kcal/mol (12490.1842 without restraints) Performing minimization step: 746. Total energy = 12484.5794 kcal/mol (12474.7938 without restraints) Performing minimization step: 747. Total energy = 12469.2149 kcal/mol (12459.4362 without restraints) Performing minimization step: 748. Total energy = 12453.8829 kcal/mol (12444.1112 without restraints) Performing minimization step: 749. Total energy = 12438.5832 kcal/mol (12428.8185 without restraints) Performing minimization step: 750. Total energy = 12423.3163 kcal/mol (12413.5585 without restraints) Performing minimization step: 751. Total energy = 12408.0826 kcal/mol (12398.3319 without restraints) Performing minimization step: 752. Total energy = 12392.8811 kcal/mol (12383.1372 without restraints) Performing minimization step: 753. Total energy = 12377.7121 kcal/mol (12367.9751 without restraints) Performing minimization step: 754. Total energy = 12362.5752 kcal/mol (12352.8451 without restraints) Performing minimization step: 755. Total energy = 12347.4707 kcal/mol (12337.7477 without restraints) Performing minimization step: 756. Total energy = 12332.3985 kcal/mol (12322.6822 without restraints) Performing minimization step: 757. Total energy = 12317.3572 kcal/mol (12307.6477 without restraints) Performing minimization step: 758. Total energy = 12302.3479 kcal/mol (12292.6454 without restraints) Performing minimization step: 759. Total energy = 12287.3707 kcal/mol (12277.6749 without restraints) Performing minimization step: 760. Total energy = 12272.4249 kcal/mol (12262.7359 without restraints) Performing minimization step: 761. Total energy = 12257.5110 kcal/mol (12247.8289 without restraints) Performing minimization step: 762. Total energy = 12242.6280 kcal/mol (12232.9527 without restraints) Performing minimization step: 763. Total energy = 12227.7769 kcal/mol (12218.1083 without restraints) Performing minimization step: 764. Total energy = 12212.9567 kcal/mol (12203.2949 without restraints) Performing minimization step: 765. Total energy = 12198.1684 kcal/mol (12188.5134 without restraints) Performing minimization step: 766. Total energy = 12183.4109 kcal/mol (12173.7624 without restraints) Performing minimization step: 767. Total energy = 12168.6846 kcal/mol (12159.0431 without restraints) Performing minimization step: 768. Total energy = 12153.9891 kcal/mol (12144.3543 without restraints) Performing minimization step: 769. Total energy = 12139.3249 kcal/mol (12129.6968 without restraints) Performing minimization step: 770. Total energy = 12124.6916 kcal/mol (12115.0702 without restraints) Performing minimization step: 771. Total energy = 12110.0890 kcal/mol (12100.4744 without restraints) Performing minimization step: 772. Total energy = 12095.5172 kcal/mol (12085.9093 without restraints) Performing minimization step: 773. Total energy = 12080.9768 kcal/mol (12071.3755 without restraints) Performing minimization step: 774. Total energy = 12066.4661 kcal/mol (12056.8715 without restraints) Performing minimization step: 775. Total energy = 12051.9860 kcal/mol (12042.3980 without restraints) Performing minimization step: 776. Total energy = 12037.5363 kcal/mol (12027.9550 without restraints) Performing minimization step: 777. Total energy = 12023.1168 kcal/mol (12013.5421 without restraints) Performing minimization step: 778. Total energy = 12008.7275 kcal/mol (11999.1594 without restraints) Performing minimization step: 779. Total energy = 11994.3681 kcal/mol (11984.8066 without restraints) Performing minimization step: 780. Total energy = 11980.0385 kcal/mol (11970.4836 without restraints) Performing minimization step: 781. Total energy = 11965.7390 kcal/mol (11956.1906 without restraints) Performing minimization step: 782. Total energy = 11951.4693 kcal/mol (11941.9276 without restraints) Performing minimization step: 783. Total energy = 11937.2291 kcal/mol (11927.6940 without restraints) Performing minimization step: 784. Total energy = 11923.0191 kcal/mol (11913.4906 without restraints) Performing minimization step: 785. Total energy = 11908.8392 kcal/mol (11899.3171 without restraints) Performing minimization step: 786. Total energy = 11894.6889 kcal/mol (11885.1734 without restraints) Performing minimization step: 787. Total energy = 11880.5678 kcal/mol (11871.0588 without restraints) Performing minimization step: 788. Total energy = 11866.4758 kcal/mol (11856.9733 without restraints) Performing minimization step: 789. Total energy = 11852.4133 kcal/mol (11842.9175 without restraints) Performing minimization step: 790. Total energy = 11838.3800 kcal/mol (11828.8905 without restraints) Performing minimization step: 791. Total energy = 11824.3758 kcal/mol (11814.8928 without restraints) Performing minimization step: 792. Total energy = 11810.4007 kcal/mol (11800.9242 without restraints) Performing minimization step: 793. Total energy = 11796.4546 kcal/mol (11786.9845 without restraints) Performing minimization step: 794. Total energy = 11782.5372 kcal/mol (11773.0735 without restraints) Performing minimization step: 795. Total energy = 11768.6491 kcal/mol (11759.1920 without restraints) Performing minimization step: 796. Total energy = 11754.7903 kcal/mol (11745.3395 without restraints) Performing minimization step: 797. Total energy = 11740.9594 kcal/mol (11731.5150 without restraints) Performing minimization step: 798. Total energy = 11727.1574 kcal/mol (11717.7194 without restraints) Performing minimization step: 799. Total energy = 11713.3839 kcal/mol (11703.9523 without restraints) Performing minimization step: 800. Total energy = 11699.6389 kcal/mol (11690.2137 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 801. Total energy = 11685.9223 kcal/mol (11676.5035 without restraints) Performing minimization step: 802. Total energy = 11672.2341 kcal/mol (11662.8218 without restraints) Performing minimization step: 803. Total energy = 11658.5746 kcal/mol (11649.1685 without restraints) Performing minimization step: 804. Total energy = 11644.9429 kcal/mol (11635.5431 without restraints) Performing minimization step: 805. Total energy = 11631.3392 kcal/mol (11621.9459 without restraints) Performing minimization step: 806. Total energy = 11617.7638 kcal/mol (11608.3767 without restraints) Performing minimization step: 807. Total energy = 11604.2163 kcal/mol (11594.8354 without restraints) Performing minimization step: 808. Total energy = 11590.6966 kcal/mol (11581.3220 without restraints) Performing minimization step: 809. Total energy = 11577.2048 kcal/mol (11567.8366 without restraints) Performing minimization step: 810. Total energy = 11563.7409 kcal/mol (11554.3789 without restraints) Performing minimization step: 811. Total energy = 11550.3043 kcal/mol (11540.9483 without restraints) Performing minimization step: 812. Total energy = 11536.8958 kcal/mol (11527.5463 without restraints) Performing minimization step: 813. Total energy = 11523.5148 kcal/mol (11514.1715 without restraints) Performing minimization step: 814. Total energy = 11510.1612 kcal/mol (11500.8242 without restraints) Performing minimization step: 815. Total energy = 11496.8349 kcal/mol (11487.5042 without restraints) Performing minimization step: 816. Total energy = 11483.5362 kcal/mol (11474.2116 without restraints) Performing minimization step: 817. Total energy = 11470.2651 kcal/mol (11460.9467 without restraints) Performing minimization step: 818. Total energy = 11457.0208 kcal/mol (11447.7086 without restraints) Performing minimization step: 819. Total energy = 11443.8037 kcal/mol (11434.4977 without restraints) Performing minimization step: 820. Total energy = 11430.6139 kcal/mol (11421.3141 without restraints) Performing minimization step: 821. Total energy = 11417.4510 kcal/mol (11408.1573 without restraints) Performing minimization step: 822. Total energy = 11404.3149 kcal/mol (11395.0274 without restraints) Performing minimization step: 823. Total energy = 11391.2057 kcal/mol (11381.9243 without restraints) Performing minimization step: 824. Total energy = 11378.1234 kcal/mol (11368.8481 without restraints) Performing minimization step: 825. Total energy = 11365.0678 kcal/mol (11355.7987 without restraints) Performing minimization step: 826. Total energy = 11352.0382 kcal/mol (11342.7752 without restraints) Performing minimization step: 827. Total energy = 11339.0356 kcal/mol (11329.7787 without restraints) Performing minimization step: 828. Total energy = 11326.0599 kcal/mol (11316.8090 without restraints) Performing minimization step: 829. Total energy = 11313.1111 kcal/mol (11303.8664 without restraints) Performing minimization step: 830. Total energy = 11300.1885 kcal/mol (11290.9498 without restraints) Performing minimization step: 831. Total energy = 11287.2922 kcal/mol (11278.0594 without restraints) Performing minimization step: 832. Total energy = 11274.4220 kcal/mol (11265.1954 without restraints) Performing minimization step: 833. Total energy = 11261.5780 kcal/mol (11252.3574 without restraints) Performing minimization step: 834. Total energy = 11248.7604 kcal/mol (11239.5459 without restraints) Performing minimization step: 835. Total energy = 11235.9686 kcal/mol (11226.7601 without restraints) Performing minimization step: 836. Total energy = 11223.2026 kcal/mol (11214.0001 without restraints) Performing minimization step: 837. Total energy = 11210.4624 kcal/mol (11201.2659 without restraints) Performing minimization step: 838. Total energy = 11197.7482 kcal/mol (11188.5576 without restraints) Performing minimization step: 839. Total energy = 11185.0596 kcal/mol (11175.8750 without restraints) Performing minimization step: 840. Total energy = 11172.3976 kcal/mol (11163.2190 without restraints) Performing minimization step: 841. Total energy = 11159.7602 kcal/mol (11150.5874 without restraints) Performing minimization step: 842. Total energy = 11147.1490 kcal/mol (11137.9824 without restraints) Performing minimization step: 843. Total energy = 11134.5643 kcal/mol (11125.4036 without restraints) Performing minimization step: 844. Total energy = 11122.0045 kcal/mol (11112.8499 without restraints) Performing minimization step: 845. Total energy = 11109.4702 kcal/mol (11100.3213 without restraints) Performing minimization step: 846. Total energy = 11096.9611 kcal/mol (11087.8181 without restraints) Performing minimization step: 847. Total energy = 11084.4776 kcal/mol (11075.3407 without restraints) Performing minimization step: 848. Total energy = 11072.0195 kcal/mol (11062.8883 without restraints) Performing minimization step: 849. Total energy = 11059.5860 kcal/mol (11050.4607 without restraints) Performing minimization step: 850. Total energy = 11047.1779 kcal/mol (11038.0584 without restraints) Performing minimization step: 851. Total energy = 11034.7947 kcal/mol (11025.6811 without restraints) Performing minimization step: 852. Total energy = 11022.4368 kcal/mol (11013.3291 without restraints) Performing minimization step: 853. Total energy = 11010.1038 kcal/mol (11001.0019 without restraints) Performing minimization step: 854. Total energy = 10997.7955 kcal/mol (10988.6994 without restraints) Performing minimization step: 855. Total energy = 10985.5120 kcal/mol (10976.4218 without restraints) Performing minimization step: 856. Total energy = 10973.2533 kcal/mol (10964.1689 without restraints) Performing minimization step: 857. Total energy = 10961.0192 kcal/mol (10951.9405 without restraints) Performing minimization step: 858. Total energy = 10948.8096 kcal/mol (10939.7367 without restraints) Performing minimization step: 859. Total energy = 10936.6248 kcal/mol (10927.5577 without restraints) Performing minimization step: 860. Total energy = 10924.4654 kcal/mol (10915.4041 without restraints) Performing minimization step: 861. Total energy = 10912.3296 kcal/mol (10903.2740 without restraints) Performing minimization step: 862. Total energy = 10900.2182 kcal/mol (10891.1684 without restraints) Performing minimization step: 863. Total energy = 10888.1314 kcal/mol (10879.0873 without restraints) Performing minimization step: 864. Total energy = 10876.0686 kcal/mol (10867.0303 without restraints) Performing minimization step: 865. Total energy = 10864.0301 kcal/mol (10854.9974 without restraints) Performing minimization step: 866. Total energy = 10852.0155 kcal/mol (10842.9886 without restraints) Performing minimization step: 867. Total energy = 10840.0255 kcal/mol (10831.0043 without restraints) Performing minimization step: 868. Total energy = 10828.0594 kcal/mol (10819.0439 without restraints) Performing minimization step: 869. Total energy = 10816.1167 kcal/mol (10807.1069 without restraints) Performing minimization step: 870. Total energy = 10804.1984 kcal/mol (10795.1942 without restraints) Performing minimization step: 871. Total energy = 10792.3041 kcal/mol (10783.3055 without restraints) Performing minimization step: 872. Total energy = 10780.4335 kcal/mol (10771.4407 without restraints) Performing minimization step: 873. Total energy = 10768.5867 kcal/mol (10759.5994 without restraints) Performing minimization step: 874. Total energy = 10756.7631 kcal/mol (10747.7815 without restraints) Performing minimization step: 875. Total energy = 10744.9636 kcal/mol (10735.9876 without restraints) Performing minimization step: 876. Total energy = 10733.1878 kcal/mol (10724.2174 without restraints) Performing minimization step: 877. Total energy = 10721.4355 kcal/mol (10712.4707 without restraints) Performing minimization step: 878. Total energy = 10709.7059 kcal/mol (10700.7469 without restraints) Performing minimization step: 879. Total energy = 10698.0002 kcal/mol (10689.0467 without restraints) Performing minimization step: 880. Total energy = 10686.3179 kcal/mol (10677.3699 without restraints) Performing minimization step: 881. Total energy = 10674.6589 kcal/mol (10665.7165 without restraints) Performing minimization step: 882. Total energy = 10663.0232 kcal/mol (10654.0863 without restraints) Performing minimization step: 883. Total energy = 10651.4110 kcal/mol (10642.4797 without restraints) Performing minimization step: 884. Total energy = 10639.8217 kcal/mol (10630.8959 without restraints) Performing minimization step: 885. Total energy = 10628.2550 kcal/mol (10619.3346 without restraints) Performing minimization step: 886. Total energy = 10616.7117 kcal/mol (10607.7969 without restraints) Performing minimization step: 887. Total energy = 10605.1911 kcal/mol (10596.2819 without restraints) Performing minimization step: 888. Total energy = 10593.6937 kcal/mol (10584.7900 without restraints) Performing minimization step: 889. Total energy = 10582.2191 kcal/mol (10573.3209 without restraints) Performing minimization step: 890. Total energy = 10570.7672 kcal/mol (10561.8745 without restraints) Performing minimization step: 891. Total energy = 10559.3387 kcal/mol (10550.4514 without restraints) Performing minimization step: 892. Total energy = 10547.9322 kcal/mol (10539.0504 without restraints) Performing minimization step: 893. Total energy = 10536.5482 kcal/mol (10527.6718 without restraints) Performing minimization step: 894. Total energy = 10525.1871 kcal/mol (10516.3161 without restraints) Performing minimization step: 895. Total energy = 10513.8477 kcal/mol (10504.9822 without restraints) Performing minimization step: 896. Total energy = 10502.5312 kcal/mol (10493.6711 without restraints) Performing minimization step: 897. Total energy = 10491.2362 kcal/mol (10482.3815 without restraints) Performing minimization step: 898. Total energy = 10479.9646 kcal/mol (10471.1153 without restraints) Performing minimization step: 899. Total energy = 10468.7158 kcal/mol (10459.8719 without restraints) Performing minimization step: 900. Total energy = 10457.4883 kcal/mol (10448.6498 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 901. Total energy = 10446.2834 kcal/mol (10437.4502 without restraints) Performing minimization step: 902. Total energy = 10435.1004 kcal/mol (10426.2726 without restraints) Performing minimization step: 903. Total energy = 10423.9395 kcal/mol (10415.1170 without restraints) Performing minimization step: 904. Total energy = 10412.8006 kcal/mol (10403.9835 without restraints) Performing minimization step: 905. Total energy = 10401.6836 kcal/mol (10392.8718 without restraints) Performing minimization step: 906. Total energy = 10390.5888 kcal/mol (10381.7824 without restraints) Performing minimization step: 907. Total energy = 10379.5158 kcal/mol (10370.7147 without restraints) Performing minimization step: 908. Total energy = 10368.4641 kcal/mol (10359.6682 without restraints) Performing minimization step: 909. Total energy = 10357.4343 kcal/mol (10348.6439 without restraints) Performing minimization step: 910. Total energy = 10346.4264 kcal/mol (10337.6414 without restraints) Performing minimization step: 911. Total energy = 10335.4404 kcal/mol (10326.6605 without restraints) Performing minimization step: 912. Total energy = 10324.4756 kcal/mol (10315.7010 without restraints) Performing minimization step: 913. Total energy = 10313.5324 kcal/mol (10304.7631 without restraints) Performing minimization step: 914. Total energy = 10302.6107 kcal/mol (10293.8465 without restraints) Performing minimization step: 915. Total energy = 10291.7106 kcal/mol (10282.9518 without restraints) Performing minimization step: 916. Total energy = 10280.8315 kcal/mol (10272.0779 without restraints) Performing minimization step: 917. Total energy = 10269.9736 kcal/mol (10261.2252 without restraints) Performing minimization step: 918. Total energy = 10259.1372 kcal/mol (10250.3940 without restraints) Performing minimization step: 919. Total energy = 10248.3222 kcal/mol (10239.5842 without restraints) Performing minimization step: 920. Total energy = 10237.5281 kcal/mol (10228.7953 without restraints) Performing minimization step: 921. Total energy = 10226.7548 kcal/mol (10218.0272 without restraints) Performing minimization step: 922. Total energy = 10216.0027 kcal/mol (10207.2803 without restraints) Performing minimization step: 923. Total energy = 10205.2718 kcal/mol (10196.5546 without restraints) Performing minimization step: 924. Total energy = 10194.5621 kcal/mol (10185.8500 without restraints) Performing minimization step: 925. Total energy = 10183.8733 kcal/mol (10175.1663 without restraints) Performing minimization step: 926. Total energy = 10173.2052 kcal/mol (10164.5035 without restraints) Performing minimization step: 927. Total energy = 10162.5580 kcal/mol (10153.8613 without restraints) Performing minimization step: 928. Total energy = 10151.9315 kcal/mol (10143.2399 without restraints) Performing minimization step: 929. Total energy = 10141.3253 kcal/mol (10132.6389 without restraints) Performing minimization step: 930. Total energy = 10130.7404 kcal/mol (10122.0589 without restraints) Performing minimization step: 931. Total energy = 10120.1755 kcal/mol (10111.4993 without restraints) Performing minimization step: 932. Total energy = 10109.6314 kcal/mol (10100.9602 without restraints) Performing minimization step: 933. Total energy = 10099.1080 kcal/mol (10090.4420 without restraints) Performing minimization step: 934. Total energy = 10088.6051 kcal/mol (10079.9443 without restraints) Performing minimization step: 935. Total energy = 10078.1225 kcal/mol (10069.4666 without restraints) Performing minimization step: 936. Total energy = 10067.6604 kcal/mol (10059.0095 without restraints) Performing minimization step: 937. Total energy = 10057.2181 kcal/mol (10048.5722 without restraints) Performing minimization step: 938. Total energy = 10046.7961 kcal/mol (10038.1553 without restraints) Performing minimization step: 939. Total energy = 10036.3939 kcal/mol (10027.7580 without restraints) Performing minimization step: 940. Total energy = 10026.0121 kcal/mol (10017.3813 without restraints) Performing minimization step: 941. Total energy = 10015.6509 kcal/mol (10007.0252 without restraints) Performing minimization step: 942. Total energy = 10005.3092 kcal/mol (9996.6884 without restraints) Performing minimization step: 943. Total energy = 9994.9870 kcal/mol (9986.3712 without restraints) Performing minimization step: 944. Total energy = 9984.6853 kcal/mol (9976.0745 without restraints) Performing minimization step: 945. Total energy = 9974.4036 kcal/mol (9965.7977 without restraints) Performing minimization step: 946. Total energy = 9964.1417 kcal/mol (9955.5407 without restraints) Performing minimization step: 947. Total energy = 9953.8999 kcal/mol (9945.3039 without restraints) Performing minimization step: 948. Total energy = 9943.6776 kcal/mol (9935.0867 without restraints) Performing minimization step: 949. Total energy = 9933.4752 kcal/mol (9924.8891 without restraints) Performing minimization step: 950. Total energy = 9923.2923 kcal/mol (9914.7111 without restraints) Performing minimization step: 951. Total energy = 9913.1292 kcal/mol (9904.5529 without restraints) Performing minimization step: 952. Total energy = 9902.9853 kcal/mol (9894.4139 without restraints) Performing minimization step: 953. Total energy = 9892.8610 kcal/mol (9884.2946 without restraints) Performing minimization step: 954. Total energy = 9882.7562 kcal/mol (9874.1946 without restraints) Performing minimization step: 955. Total energy = 9872.6707 kcal/mol (9864.1140 without restraints) Performing minimization step: 956. Total energy = 9862.6044 kcal/mol (9854.0526 without restraints) Performing minimization step: 957. Total energy = 9852.5571 kcal/mol (9844.0101 without restraints) Performing minimization step: 958. Total energy = 9842.5296 kcal/mol (9833.9875 without restraints) Performing minimization step: 959. Total energy = 9832.5213 kcal/mol (9823.9840 without restraints) Performing minimization step: 960. Total energy = 9822.5321 kcal/mol (9813.9997 without restraints) Performing minimization step: 961. Total energy = 9812.5618 kcal/mol (9804.0341 without restraints) Performing minimization step: 962. Total energy = 9802.6105 kcal/mol (9794.0877 without restraints) Performing minimization step: 963. Total energy = 9792.6786 kcal/mol (9784.1606 without restraints) Performing minimization step: 964. Total energy = 9782.7655 kcal/mol (9774.2523 without restraints) Performing minimization step: 965. Total energy = 9772.8714 kcal/mol (9764.3630 without restraints) Performing minimization step: 966. Total energy = 9762.9960 kcal/mol (9754.4923 without restraints) Performing minimization step: 967. Total energy = 9753.1396 kcal/mol (9744.6408 without restraints) Performing minimization step: 968. Total energy = 9743.3019 kcal/mol (9734.8078 without restraints) Performing minimization step: 969. Total energy = 9733.4828 kcal/mol (9724.9933 without restraints) Performing minimization step: 970. Total energy = 9723.6828 kcal/mol (9715.1982 without restraints) Performing minimization step: 971. Total energy = 9713.9008 kcal/mol (9705.4209 without restraints) Performing minimization step: 972. Total energy = 9704.1376 kcal/mol (9695.6625 without restraints) Performing minimization step: 973. Total energy = 9694.3927 kcal/mol (9685.9222 without restraints) Performing minimization step: 974. Total energy = 9684.6661 kcal/mol (9676.2004 without restraints) Performing minimization step: 975. Total energy = 9674.9585 kcal/mol (9666.4975 without restraints) Performing minimization step: 976. Total energy = 9665.2697 kcal/mol (9656.8134 without restraints) Performing minimization step: 977. Total energy = 9655.5990 kcal/mol (9647.1473 without restraints) Performing minimization step: 978. Total energy = 9645.9461 kcal/mol (9637.4991 without restraints) Performing minimization step: 979. Total energy = 9636.3116 kcal/mol (9627.8692 without restraints) Performing minimization step: 980. Total energy = 9626.6954 kcal/mol (9618.2577 without restraints) Performing minimization step: 981. Total energy = 9617.0972 kcal/mol (9608.6640 without restraints) Performing minimization step: 982. Total energy = 9607.5173 kcal/mol (9599.0889 without restraints) Performing minimization step: 983. Total energy = 9597.9560 kcal/mol (9589.5324 without restraints) Performing minimization step: 984. Total energy = 9588.4125 kcal/mol (9579.9935 without restraints) Performing minimization step: 985. Total energy = 9578.8875 kcal/mol (9570.4730 without restraints) Performing minimization step: 986. Total energy = 9569.3795 kcal/mol (9560.9696 without restraints) Performing minimization step: 987. Total energy = 9559.8904 kcal/mol (9551.4851 without restraints) Performing minimization step: 988. Total energy = 9550.4187 kcal/mol (9542.0178 without restraints) Performing minimization step: 989. Total energy = 9540.9646 kcal/mol (9532.5684 without restraints) Performing minimization step: 990. Total energy = 9531.5284 kcal/mol (9523.1368 without restraints) Performing minimization step: 991. Total energy = 9522.1097 kcal/mol (9513.7227 without restraints) Performing minimization step: 992. Total energy = 9512.7086 kcal/mol (9504.3261 without restraints) Performing minimization step: 993. Total energy = 9503.3251 kcal/mol (9494.9470 without restraints) Performing minimization step: 994. Total energy = 9493.9591 kcal/mol (9485.5857 without restraints) Performing minimization step: 995. Total energy = 9484.6106 kcal/mol (9476.2417 without restraints) Performing minimization step: 996. Total energy = 9475.2800 kcal/mol (9466.9157 without restraints) Performing minimization step: 997. Total energy = 9465.9669 kcal/mol (9457.6070 without restraints) Performing minimization step: 998. Total energy = 9456.6707 kcal/mol (9448.3153 without restraints) Performing minimization step: 999. Total energy = 9447.3919 kcal/mol (9439.0411 without restraints) Performing minimization step: 1000. Total energy = 9438.1306 kcal/mol (9429.7843 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 9428.8872 kcal/mol (9420.5453 without restraints) Performing minimization step: 1002. Total energy = 9419.6607 kcal/mol (9411.3232 without restraints) Performing minimization step: 1003. Total energy = 9410.4511 kcal/mol (9402.1181 without restraints) Performing minimization step: 1004. Total energy = 9401.2589 kcal/mol (9392.9303 without restraints) Performing minimization step: 1005. Total energy = 9392.0839 kcal/mol (9383.7598 without restraints) Performing minimization step: 1006. Total energy = 9382.9257 kcal/mol (9374.6059 without restraints) Performing minimization step: 1007. Total energy = 9373.7844 kcal/mol (9365.4691 without restraints) Performing minimization step: 1008. Total energy = 9364.6600 kcal/mol (9356.3492 without restraints) Performing minimization step: 1009. Total energy = 9355.5528 kcal/mol (9347.2466 without restraints) Performing minimization step: 1010. Total energy = 9346.4623 kcal/mol (9338.1602 without restraints) Performing minimization step: 1011. Total energy = 9337.3885 kcal/mol (9329.0907 without restraints) Performing minimization step: 1012. Total energy = 9328.3319 kcal/mol (9320.0387 without restraints) Performing minimization step: 1013. Total energy = 9319.2918 kcal/mol (9311.0029 without restraints) Performing minimization step: 1014. Total energy = 9310.2687 kcal/mol (9301.9842 without restraints) Performing minimization step: 1015. Total energy = 9301.2619 kcal/mol (9292.9817 without restraints) Performing minimization step: 1016. Total energy = 9292.2717 kcal/mol (9283.9959 without restraints) Performing minimization step: 1017. Total energy = 9283.2981 kcal/mol (9275.0266 without restraints) Performing minimization step: 1018. Total energy = 9274.3408 kcal/mol (9266.0736 without restraints) Performing minimization step: 1019. Total energy = 9265.4002 kcal/mol (9257.1374 without restraints) Performing minimization step: 1020. Total energy = 9256.4763 kcal/mol (9248.2178 without restraints) Performing minimization step: 1021. Total energy = 9247.5686 kcal/mol (9239.3143 without restraints) Performing minimization step: 1022. Total energy = 9238.6775 kcal/mol (9230.4275 without restraints) Performing minimization step: 1023. Total energy = 9229.8023 kcal/mol (9221.5567 without restraints) Performing minimization step: 1024. Total energy = 9220.9437 kcal/mol (9212.7025 without restraints) Performing minimization step: 1025. Total energy = 9212.1018 kcal/mol (9203.8648 without restraints) Performing minimization step: 1026. Total energy = 9203.2761 kcal/mol (9195.0434 without restraints) Performing minimization step: 1027. Total energy = 9194.4662 kcal/mol (9186.2375 without restraints) Performing minimization step: 1028. Total energy = 9185.6718 kcal/mol (9177.4474 without restraints) Performing minimization step: 1029. Total energy = 9176.8937 kcal/mol (9168.6734 without restraints) Performing minimization step: 1030. Total energy = 9168.1315 kcal/mol (9159.9156 without restraints) Performing minimization step: 1031. Total energy = 9159.3858 kcal/mol (9151.1741 without restraints) Performing minimization step: 1032. Total energy = 9150.6559 kcal/mol (9142.4483 without restraints) Performing minimization step: 1033. Total energy = 9141.9417 kcal/mol (9133.7385 without restraints) Performing minimization step: 1034. Total energy = 9133.2439 kcal/mol (9125.0448 without restraints) Performing minimization step: 1035. Total energy = 9124.5614 kcal/mol (9116.3665 without restraints) Performing minimization step: 1036. Total energy = 9115.8949 kcal/mol (9107.7042 without restraints) Performing minimization step: 1037. Total energy = 9107.2440 kcal/mol (9099.0575 without restraints) Performing minimization step: 1038. Total energy = 9098.6089 kcal/mol (9090.4266 without restraints) Performing minimization step: 1039. Total energy = 9089.9897 kcal/mol (9081.8114 without restraints) Performing minimization step: 1040. Total energy = 9081.3858 kcal/mol (9073.2118 without restraints) Performing minimization step: 1041. Total energy = 9072.7973 kcal/mol (9064.6275 without restraints) Performing minimization step: 1042. Total energy = 9064.2244 kcal/mol (9056.0586 without restraints) Performing minimization step: 1043. Total energy = 9055.6671 kcal/mol (9047.5054 without restraints) Performing minimization step: 1044. Total energy = 9047.1251 kcal/mol (9038.9676 without restraints) Performing minimization step: 1045. Total energy = 9038.5990 kcal/mol (9030.4456 without restraints) Performing minimization step: 1046. Total energy = 9030.0882 kcal/mol (9021.9390 without restraints) Performing minimization step: 1047. Total energy = 9021.5927 kcal/mol (9013.4475 without restraints) Performing minimization step: 1048. Total energy = 9013.1125 kcal/mol (9004.9713 without restraints) Performing minimization step: 1049. Total energy = 9004.6476 kcal/mol (8996.5105 without restraints) Performing minimization step: 1050. Total energy = 8996.1980 kcal/mol (8988.0649 without restraints) Performing minimization step: 1051. Total energy = 8987.7639 kcal/mol (8979.6349 without restraints) Performing minimization step: 1052. Total energy = 8979.3447 kcal/mol (8971.2197 without restraints) Performing minimization step: 1053. Total energy = 8970.9404 kcal/mol (8962.8195 without restraints) Performing minimization step: 1054. Total energy = 8962.5509 kcal/mol (8954.4340 without restraints) Performing minimization step: 1055. Total energy = 8954.1765 kcal/mol (8946.0637 without restraints) Performing minimization step: 1056. Total energy = 8945.8179 kcal/mol (8937.7091 without restraints) Performing minimization step: 1057. Total energy = 8937.4731 kcal/mol (8929.3683 without restraints) Performing minimization step: 1058. Total energy = 8929.1437 kcal/mol (8921.0430 without restraints) Performing minimization step: 1059. Total energy = 8920.8292 kcal/mol (8912.7324 without restraints) Performing minimization step: 1060. Total energy = 8912.5296 kcal/mol (8904.4369 without restraints) Performing minimization step: 1061. Total energy = 8904.2448 kcal/mol (8896.1559 without restraints) Performing minimization step: 1062. Total energy = 8895.9748 kcal/mol (8887.8901 without restraints) Performing minimization step: 1063. Total energy = 8887.7193 kcal/mol (8879.6384 without restraints) Performing minimization step: 1064. Total energy = 8879.4786 kcal/mol (8871.4016 without restraints) Performing minimization step: 1065. Total energy = 8871.2529 kcal/mol (8863.1798 without restraints) Performing minimization step: 1066. Total energy = 8863.0412 kcal/mol (8854.9720 without restraints) Performing minimization step: 1067. Total energy = 8854.8445 kcal/mol (8846.7794 without restraints) Performing minimization step: 1068. Total energy = 8846.6617 kcal/mol (8838.6005 without restraints) Performing minimization step: 1069. Total energy = 8838.4936 kcal/mol (8830.4363 without restraints) Performing minimization step: 1070. Total energy = 8830.3401 kcal/mol (8822.2867 without restraints) Performing minimization step: 1071. Total energy = 8822.2010 kcal/mol (8814.1515 without restraints) Performing minimization step: 1072. Total energy = 8814.0761 kcal/mol (8806.0305 without restraints) Performing minimization step: 1073. Total energy = 8805.9658 kcal/mol (8797.9240 without restraints) Performing minimization step: 1074. Total energy = 8797.8692 kcal/mol (8789.8313 without restraints) Performing minimization step: 1075. Total energy = 8789.7875 kcal/mol (8781.7535 without restraints) Performing minimization step: 1076. Total energy = 8781.7205 kcal/mol (8773.6903 without restraints) Performing minimization step: 1077. Total energy = 8773.6671 kcal/mol (8765.6408 without restraints) Performing minimization step: 1078. Total energy = 8765.6283 kcal/mol (8757.6058 without restraints) Performing minimization step: 1079. Total energy = 8757.6033 kcal/mol (8749.5848 without restraints) Performing minimization step: 1080. Total energy = 8749.5923 kcal/mol (8741.5775 without restraints) Performing minimization step: 1081. Total energy = 8741.5954 kcal/mol (8733.5846 without restraints) Performing minimization step: 1082. Total energy = 8733.6123 kcal/mol (8725.6052 without restraints) Performing minimization step: 1083. Total energy = 8725.6436 kcal/mol (8717.6403 without restraints) Performing minimization step: 1084. Total energy = 8717.6885 kcal/mol (8709.6889 without restraints) Performing minimization step: 1085. Total energy = 8709.7471 kcal/mol (8701.7514 without restraints) Performing minimization step: 1086. Total energy = 8701.8197 kcal/mol (8693.8278 without restraints) Performing minimization step: 1087. Total energy = 8693.9062 kcal/mol (8685.9181 without restraints) Performing minimization step: 1088. Total energy = 8686.0064 kcal/mol (8678.0219 without restraints) Performing minimization step: 1089. Total energy = 8678.1203 kcal/mol (8670.1397 without restraints) Performing minimization step: 1090. Total energy = 8670.2483 kcal/mol (8662.2714 without restraints) Performing minimization step: 1091. Total energy = 8662.3898 kcal/mol (8654.4166 without restraints) Performing minimization step: 1092. Total energy = 8654.5448 kcal/mol (8646.5754 without restraints) Performing minimization step: 1093. Total energy = 8646.7130 kcal/mol (8638.7474 without restraints) Performing minimization step: 1094. Total energy = 8638.8951 kcal/mol (8630.9331 without restraints) Performing minimization step: 1095. Total energy = 8631.0910 kcal/mol (8623.1328 without restraints) Performing minimization step: 1096. Total energy = 8623.3005 kcal/mol (8615.3460 without restraints) Performing minimization step: 1097. Total energy = 8615.5234 kcal/mol (8607.5727 without restraints) Performing minimization step: 1098. Total energy = 8607.7599 kcal/mol (8599.8128 without restraints) Performing minimization step: 1099. Total energy = 8600.0093 kcal/mol (8592.0659 without restraints) Performing minimization step: 1100. Total energy = 8592.2726 kcal/mol (8584.3329 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 8584.5489 kcal/mol (8576.6128 without restraints) Performing minimization step: 1102. Total energy = 8576.8384 kcal/mol (8568.9059 without restraints) Performing minimization step: 1103. Total energy = 8569.1414 kcal/mol (8561.2126 without restraints) Performing minimization step: 1104. Total energy = 8561.4570 kcal/mol (8553.5319 without restraints) Performing minimization step: 1105. Total energy = 8553.7862 kcal/mol (8545.8645 without restraints) Performing minimization step: 1106. Total energy = 8546.1286 kcal/mol (8538.2108 without restraints) Performing minimization step: 1107. Total energy = 8538.4841 kcal/mol (8530.5699 without restraints) Performing minimization step: 1108. Total energy = 8530.8527 kcal/mol (8522.9421 without restraints) Performing minimization step: 1109. Total energy = 8523.2342 kcal/mol (8515.3273 without restraints) Performing minimization step: 1110. Total energy = 8515.6288 kcal/mol (8507.7254 without restraints) Performing minimization step: 1111. Total energy = 8508.0365 kcal/mol (8500.1369 without restraints) Performing minimization step: 1112. Total energy = 8500.4572 kcal/mol (8492.5611 without restraints) Performing minimization step: 1113. Total energy = 8492.8907 kcal/mol (8484.9981 without restraints) Performing minimization step: 1114. Total energy = 8485.3373 kcal/mol (8477.4483 without restraints) Performing minimization step: 1115. Total energy = 8477.7967 kcal/mol (8469.9112 without restraints) Performing minimization step: 1116. Total energy = 8470.2687 kcal/mol (8462.3868 without restraints) Performing minimization step: 1117. Total energy = 8462.7535 kcal/mol (8454.8750 without restraints) Performing minimization step: 1118. Total energy = 8455.2511 kcal/mol (8447.3763 without restraints) Performing minimization step: 1119. Total energy = 8447.7612 kcal/mol (8439.8900 without restraints) Performing minimization step: 1120. Total energy = 8440.2842 kcal/mol (8432.4165 without restraints) Performing minimization step: 1121. Total energy = 8432.8199 kcal/mol (8424.9558 without restraints) Performing minimization step: 1122. Total energy = 8425.3682 kcal/mol (8417.5076 without restraints) Performing minimization step: 1123. Total energy = 8417.9290 kcal/mol (8410.0719 without restraints) Performing minimization step: 1124. Total energy = 8410.5024 kcal/mol (8402.6488 without restraints) Performing minimization step: 1125. Total energy = 8403.0887 kcal/mol (8395.2387 without restraints) Performing minimization step: 1126. Total energy = 8395.6876 kcal/mol (8387.8410 without restraints) Performing minimization step: 1127. Total energy = 8388.2983 kcal/mol (8380.4552 without restraints) Performing minimization step: 1128. Total energy = 8380.9216 kcal/mol (8373.0821 without restraints) Performing minimization step: 1129. Total energy = 8373.5573 kcal/mol (8365.7211 without restraints) Performing minimization step: 1130. Total energy = 8366.2057 kcal/mol (8358.3732 without restraints) Performing minimization step: 1131. Total energy = 8358.8660 kcal/mol (8351.0367 without restraints) Performing minimization step: 1132. Total energy = 8351.5385 kcal/mol (8343.7127 without restraints) Performing minimization step: 1133. Total energy = 8344.2235 kcal/mol (8336.4012 without restraints) Performing minimization step: 1134. Total energy = 8336.9206 kcal/mol (8329.1016 without restraints) Performing minimization step: 1135. Total energy = 8329.6296 kcal/mol (8321.8141 without restraints) Performing minimization step: 1136. Total energy = 8322.3511 kcal/mol (8314.5389 without restraints) Performing minimization step: 1137. Total energy = 8315.0848 kcal/mol (8307.2762 without restraints) Performing minimization step: 1138. Total energy = 8307.8305 kcal/mol (8300.0252 without restraints) Performing minimization step: 1139. Total energy = 8300.5883 kcal/mol (8292.7865 without restraints) Performing minimization step: 1140. Total energy = 8293.3578 kcal/mol (8285.5594 without restraints) Performing minimization step: 1141. Total energy = 8286.1398 kcal/mol (8278.3447 without restraints) Performing minimization step: 1142. Total energy = 8278.9339 kcal/mol (8271.1422 without restraints) Performing minimization step: 1143. Total energy = 8271.7396 kcal/mol (8263.9516 without restraints) Performing minimization step: 1144. Total energy = 8264.5578 kcal/mol (8256.7729 without restraints) Performing minimization step: 1145. Total energy = 8257.3871 kcal/mol (8249.6055 without restraints) Performing minimization step: 1146. Total energy = 8250.2285 kcal/mol (8242.4504 without restraints) Performing minimization step: 1147. Total energy = 8243.0817 kcal/mol (8235.3068 without restraints) Performing minimization step: 1148. Total energy = 8235.9467 kcal/mol (8228.1752 without restraints) Performing minimization step: 1149. Total energy = 8228.8234 kcal/mol (8221.0552 without restraints) Performing minimization step: 1150. Total energy = 8221.7116 kcal/mol (8213.9468 without restraints) Performing minimization step: 1151. Total energy = 8214.6119 kcal/mol (8206.8504 without restraints) Performing minimization step: 1152. Total energy = 8207.5239 kcal/mol (8199.7656 without restraints) Performing minimization step: 1153. Total energy = 8200.4472 kcal/mol (8192.6923 without restraints) Performing minimization step: 1154. Total energy = 8193.3815 kcal/mol (8185.6298 without restraints) Performing minimization step: 1155. Total energy = 8186.3279 kcal/mol (8178.5795 without restraints) Performing minimization step: 1156. Total energy = 8179.2859 kcal/mol (8171.5409 without restraints) Performing minimization step: 1157. Total energy = 8172.2560 kcal/mol (8164.5143 without restraints) Performing minimization step: 1158. Total energy = 8165.2372 kcal/mol (8157.4987 without restraints) Performing minimization step: 1159. Total energy = 8158.2301 kcal/mol (8150.4949 without restraints) Performing minimization step: 1160. Total energy = 8151.2342 kcal/mol (8143.5024 without restraints) Performing minimization step: 1161. Total energy = 8144.2499 kcal/mol (8136.5212 without restraints) Performing minimization step: 1162. Total energy = 8137.2763 kcal/mol (8129.5508 without restraints) Performing minimization step: 1163. Total energy = 8130.3141 kcal/mol (8122.5919 without restraints) Performing minimization step: 1164. Total energy = 8123.3633 kcal/mol (8115.6443 without restraints) Performing minimization step: 1165. Total energy = 8116.4236 kcal/mol (8108.7078 without restraints) Performing minimization step: 1166. Total energy = 8109.4957 kcal/mol (8101.7832 without restraints) Performing minimization step: 1167. Total energy = 8102.5793 kcal/mol (8094.8700 without restraints) Performing minimization step: 1168. Total energy = 8095.6738 kcal/mol (8087.9676 without restraints) Performing minimization step: 1169. Total energy = 8088.7792 kcal/mol (8081.0763 without restraints) Performing minimization step: 1170. Total energy = 8081.8958 kcal/mol (8074.1961 without restraints) Performing minimization step: 1171. Total energy = 8075.0232 kcal/mol (8067.3268 without restraints) Performing minimization step: 1172. Total energy = 8068.1620 kcal/mol (8060.4687 without restraints) Performing minimization step: 1173. Total energy = 8061.3116 kcal/mol (8053.6213 without restraints) Performing minimization step: 1174. Total energy = 8054.4721 kcal/mol (8046.7852 without restraints) Performing minimization step: 1175. Total energy = 8047.6445 kcal/mol (8039.9607 without restraints) Performing minimization step: 1176. Total energy = 8040.8277 kcal/mol (8033.1471 without restraints) Performing minimization step: 1177. Total energy = 8034.0217 kcal/mol (8026.3444 without restraints) Performing minimization step: 1178. Total energy = 8027.2265 kcal/mol (8019.5522 without restraints) Performing minimization step: 1179. Total energy = 8020.4422 kcal/mol (8012.7711 without restraints) Performing minimization step: 1180. Total energy = 8013.6679 kcal/mol (8005.9998 without restraints) Performing minimization step: 1181. Total energy = 8006.9051 kcal/mol (7999.2402 without restraints) Performing minimization step: 1182. Total energy = 8000.1531 kcal/mol (7992.4913 without restraints) Performing minimization step: 1183. Total energy = 7993.4118 kcal/mol (7985.7531 without restraints) Performing minimization step: 1184. Total energy = 7986.6812 kcal/mol (7979.0256 without restraints) Performing minimization step: 1185. Total energy = 7979.9615 kcal/mol (7972.3091 without restraints) Performing minimization step: 1186. Total energy = 7973.2525 kcal/mol (7965.6031 without restraints) Performing minimization step: 1187. Total energy = 7966.5541 kcal/mol (7958.9078 without restraints) Performing minimization step: 1188. Total energy = 7959.8663 kcal/mol (7952.2230 without restraints) Performing minimization step: 1189. Total energy = 7953.1889 kcal/mol (7945.5488 without restraints) Performing minimization step: 1190. Total energy = 7946.5223 kcal/mol (7938.8852 without restraints) Performing minimization step: 1191. Total energy = 7939.8664 kcal/mol (7932.2325 without restraints) Performing minimization step: 1192. Total energy = 7933.2212 kcal/mol (7925.5903 without restraints) Performing minimization step: 1193. Total energy = 7926.5866 kcal/mol (7918.9587 without restraints) Performing minimization step: 1194. Total energy = 7919.9620 kcal/mol (7912.3372 without restraints) Performing minimization step: 1195. Total energy = 7913.3479 kcal/mol (7905.7262 without restraints) Performing minimization step: 1196. Total energy = 7906.7443 kcal/mol (7899.1256 without restraints) Performing minimization step: 1197. Total energy = 7900.1512 kcal/mol (7892.5355 without restraints) Performing minimization step: 1198. Total energy = 7893.5683 kcal/mol (7885.9555 without restraints) Performing minimization step: 1199. Total energy = 7886.9956 kcal/mol (7879.3859 without restraints) Performing minimization step: 1200. Total energy = 7880.4331 kcal/mol (7872.8265 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 7873.8811 kcal/mol (7866.2775 without restraints) Performing minimization step: 1202. Total energy = 7867.3396 kcal/mol (7859.7390 without restraints) Performing minimization step: 1203. Total energy = 7860.8075 kcal/mol (7853.2098 without restraints) Performing minimization step: 1204. Total energy = 7854.2864 kcal/mol (7846.6918 without restraints) Performing minimization step: 1205. Total energy = 7847.7755 kcal/mol (7840.1839 without restraints) Performing minimization step: 1206. Total energy = 7841.2744 kcal/mol (7833.6857 without restraints) Performing minimization step: 1207. Total energy = 7834.7842 kcal/mol (7827.1985 without restraints) Performing minimization step: 1208. Total energy = 7828.3035 kcal/mol (7820.7207 without restraints) Performing minimization step: 1209. Total energy = 7821.8329 kcal/mol (7814.2531 without restraints) Performing minimization step: 1210. Total energy = 7815.3723 kcal/mol (7807.7955 without restraints) Performing minimization step: 1211. Total energy = 7808.9218 kcal/mol (7801.3479 without restraints) Performing minimization step: 1212. Total energy = 7802.4812 kcal/mol (7794.9103 without restraints) Performing minimization step: 1213. Total energy = 7796.0510 kcal/mol (7788.4831 without restraints) Performing minimization step: 1214. Total energy = 7789.6306 kcal/mol (7782.0657 without restraints) Performing minimization step: 1215. Total energy = 7783.2209 kcal/mol (7775.6587 without restraints) Performing minimization step: 1216. Total energy = 7776.8201 kcal/mol (7769.2609 without restraints) Performing minimization step: 1217. Total energy = 7770.4292 kcal/mol (7762.8729 without restraints) Performing minimization step: 1218. Total energy = 7764.0482 kcal/mol (7756.4948 without restraints) Performing minimization step: 1219. Total energy = 7757.6776 kcal/mol (7750.1271 without restraints) Performing minimization step: 1220. Total energy = 7751.3165 kcal/mol (7743.7691 without restraints) Performing minimization step: 1221. Total energy = 7744.9653 kcal/mol (7737.4205 without restraints) Performing minimization step: 1222. Total energy = 7738.6234 kcal/mol (7731.0816 without restraints) Performing minimization step: 1223. Total energy = 7732.2915 kcal/mol (7724.7526 without restraints) Performing minimization step: 1224. Total energy = 7725.9689 kcal/mol (7718.4328 without restraints) Performing minimization step: 1225. Total energy = 7719.6566 kcal/mol (7712.1234 without restraints) Performing minimization step: 1226. Total energy = 7713.3534 kcal/mol (7705.8229 without restraints) Performing minimization step: 1227. Total energy = 7707.0598 kcal/mol (7699.5323 without restraints) Performing minimization step: 1228. Total energy = 7700.7760 kcal/mol (7693.2513 without restraints) Performing minimization step: 1229. Total energy = 7694.5021 kcal/mol (7686.9803 without restraints) Performing minimization step: 1230. Total energy = 7688.2374 kcal/mol (7680.7185 without restraints) Performing minimization step: 1231. Total energy = 7681.9827 kcal/mol (7674.4666 without restraints) Performing minimization step: 1232. Total energy = 7675.7367 kcal/mol (7668.2235 without restraints) Performing minimization step: 1233. Total energy = 7669.5007 kcal/mol (7661.9902 without restraints) Performing minimization step: 1234. Total energy = 7663.2740 kcal/mol (7655.7664 without restraints) Performing minimization step: 1235. Total energy = 7657.0566 kcal/mol (7649.5518 without restraints) Performing minimization step: 1236. Total energy = 7650.8488 kcal/mol (7643.3468 without restraints) Performing minimization step: 1237. Total energy = 7644.6505 kcal/mol (7637.1514 without restraints) Performing minimization step: 1238. Total energy = 7638.4613 kcal/mol (7630.9649 without restraints) Performing minimization step: 1239. Total energy = 7632.2817 kcal/mol (7624.7881 without restraints) Performing minimization step: 1240. Total energy = 7626.1109 kcal/mol (7618.6201 without restraints) Performing minimization step: 1241. Total energy = 7619.9499 kcal/mol (7612.4619 without restraints) Performing minimization step: 1242. Total energy = 7613.7983 kcal/mol (7606.3130 without restraints) Performing minimization step: 1243. Total energy = 7607.6560 kcal/mol (7600.1735 without restraints) Performing minimization step: 1244. Total energy = 7601.5228 kcal/mol (7594.0431 without restraints) Performing minimization step: 1245. Total energy = 7595.3998 kcal/mol (7587.9228 without restraints) Performing minimization step: 1246. Total energy = 7589.2848 kcal/mol (7581.8106 without restraints) Performing minimization step: 1247. Total energy = 7583.1791 kcal/mol (7575.7077 without restraints) Performing minimization step: 1248. Total energy = 7577.0825 kcal/mol (7569.6137 without restraints) Performing minimization step: 1249. Total energy = 7570.9949 kcal/mol (7563.5289 without restraints) Performing minimization step: 1250. Total energy = 7564.9159 kcal/mol (7557.4526 without restraints) Performing minimization step: 1251. Total energy = 7558.8468 kcal/mol (7551.3862 without restraints) Performing minimization step: 1252. Total energy = 7552.7867 kcal/mol (7545.3288 without restraints) Performing minimization step: 1253. Total energy = 7546.7359 kcal/mol (7539.2810 without restraints) Performing minimization step: 1254. Total energy = 7540.6942 kcal/mol (7533.2418 without restraints) Performing minimization step: 1255. Total energy = 7534.6609 kcal/mol (7527.2113 without restraints) Performing minimization step: 1256. Total energy = 7528.6373 kcal/mol (7521.1904 without restraints) Performing minimization step: 1257. Total energy = 7522.6221 kcal/mol (7515.1778 without restraints) Performing minimization step: 1258. Total energy = 7516.6160 kcal/mol (7509.1744 without restraints) Performing minimization step: 1259. Total energy = 7510.6188 kcal/mol (7503.1799 without restraints) Performing minimization step: 1260. Total energy = 7504.6304 kcal/mol (7497.1942 without restraints) Performing minimization step: 1261. Total energy = 7498.6507 kcal/mol (7491.2172 without restraints) Performing minimization step: 1262. Total energy = 7492.6803 kcal/mol (7485.2494 without restraints) Performing minimization step: 1263. Total energy = 7486.7188 kcal/mol (7479.2909 without restraints) Performing minimization step: 1264. Total energy = 7480.7660 kcal/mol (7473.3405 without restraints) Performing minimization step: 1265. Total energy = 7474.8221 kcal/mol (7467.3994 without restraints) Performing minimization step: 1266. Total energy = 7468.8867 kcal/mol (7461.4665 without restraints) Performing minimization step: 1267. Total energy = 7462.9597 kcal/mol (7455.5421 without restraints) Performing minimization step: 1268. Total energy = 7457.0416 kcal/mol (7449.6267 without restraints) Performing minimization step: 1269. Total energy = 7451.1324 kcal/mol (7443.7201 without restraints) Performing minimization step: 1270. Total energy = 7445.2318 kcal/mol (7437.8221 without restraints) Performing minimization step: 1271. Total energy = 7439.3403 kcal/mol (7431.9334 without restraints) Performing minimization step: 1272. Total energy = 7433.4571 kcal/mol (7426.0527 without restraints) Performing minimization step: 1273. Total energy = 7427.5826 kcal/mol (7420.1808 without restraints) Performing minimization step: 1274. Total energy = 7421.7162 kcal/mol (7414.3171 without restraints) Performing minimization step: 1275. Total energy = 7415.8586 kcal/mol (7408.4620 without restraints) Performing minimization step: 1276. Total energy = 7410.0102 kcal/mol (7402.6162 without restraints) Performing minimization step: 1277. Total energy = 7404.1700 kcal/mol (7396.7786 without restraints) Performing minimization step: 1278. Total energy = 7398.3383 kcal/mol (7390.9495 without restraints) Performing minimization step: 1279. Total energy = 7392.5147 kcal/mol (7385.1285 without restraints) Performing minimization step: 1280. Total energy = 7386.7001 kcal/mol (7379.3165 without restraints) Performing minimization step: 1281. Total energy = 7380.8936 kcal/mol (7373.5126 without restraints) Performing minimization step: 1282. Total energy = 7375.0956 kcal/mol (7367.7171 without restraints) Performing minimization step: 1283. Total energy = 7369.3060 kcal/mol (7361.9301 without restraints) Performing minimization step: 1284. Total energy = 7363.5247 kcal/mol (7356.1514 without restraints) Performing minimization step: 1285. Total energy = 7357.7517 kcal/mol (7350.3809 without restraints) Performing minimization step: 1286. Total energy = 7351.9869 kcal/mol (7344.6188 without restraints) Performing minimization step: 1287. Total energy = 7346.2309 kcal/mol (7338.8652 without restraints) Performing minimization step: 1288. Total energy = 7340.4830 kcal/mol (7333.1199 without restraints) Performing minimization step: 1289. Total energy = 7334.7435 kcal/mol (7327.3829 without restraints) Performing minimization step: 1290. Total energy = 7329.0122 kcal/mol (7321.6541 without restraints) Performing minimization step: 1291. Total energy = 7323.2891 kcal/mol (7315.9336 without restraints) Performing minimization step: 1292. Total energy = 7317.5745 kcal/mol (7310.2215 without restraints) Performing minimization step: 1293. Total energy = 7311.8678 kcal/mol (7304.5173 without restraints) Performing minimization step: 1294. Total energy = 7306.1692 kcal/mol (7298.8212 without restraints) Performing minimization step: 1295. Total energy = 7300.4791 kcal/mol (7293.1337 without restraints) Performing minimization step: 1296. Total energy = 7294.7972 kcal/mol (7287.4543 without restraints) Performing minimization step: 1297. Total energy = 7289.1234 kcal/mol (7281.7829 without restraints) Performing minimization step: 1298. Total energy = 7283.4578 kcal/mol (7276.1199 without restraints) Performing minimization step: 1299. Total energy = 7277.8000 kcal/mol (7270.4646 without restraints) Performing minimization step: 1300. Total energy = 7272.1506 kcal/mol (7264.8176 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 7266.5097 kcal/mol (7259.1792 without restraints) Performing minimization step: 1302. Total energy = 7260.8762 kcal/mol (7253.5483 without restraints) Performing minimization step: 1303. Total energy = 7255.2509 kcal/mol (7247.9254 without restraints) Performing minimization step: 1304. Total energy = 7249.6336 kcal/mol (7242.3107 without restraints) Performing minimization step: 1305. Total energy = 7244.0241 kcal/mol (7236.7035 without restraints) Performing minimization step: 1306. Total energy = 7238.4226 kcal/mol (7231.1045 without restraints) Performing minimization step: 1307. Total energy = 7232.8298 kcal/mol (7225.5142 without restraints) Performing minimization step: 1308. Total energy = 7227.2443 kcal/mol (7219.9311 without restraints) Performing minimization step: 1309. Total energy = 7221.6671 kcal/mol (7214.3563 without restraints) Performing minimization step: 1310. Total energy = 7216.0979 kcal/mol (7208.7895 without restraints) Performing minimization step: 1311. Total energy = 7210.5365 kcal/mol (7203.2307 without restraints) Performing minimization step: 1312. Total energy = 7204.9827 kcal/mol (7197.6792 without restraints) Performing minimization step: 1313. Total energy = 7199.4370 kcal/mol (7192.1359 without restraints) Performing minimization step: 1314. Total energy = 7193.8990 kcal/mol (7186.6004 without restraints) Performing minimization step: 1315. Total energy = 7188.3686 kcal/mol (7181.0724 without restraints) Performing minimization step: 1316. Total energy = 7182.8455 kcal/mol (7175.5518 without restraints) Performing minimization step: 1317. Total energy = 7177.3309 kcal/mol (7170.0398 without restraints) Performing minimization step: 1318. Total energy = 7171.8239 kcal/mol (7164.5349 without restraints) Performing minimization step: 1319. Total energy = 7166.3249 kcal/mol (7159.0384 without restraints) Performing minimization step: 1320. Total energy = 7160.8334 kcal/mol (7153.5492 without restraints) Performing minimization step: 1321. Total energy = 7155.3496 kcal/mol (7148.0679 without restraints) Performing minimization step: 1322. Total energy = 7149.8736 kcal/mol (7142.5942 without restraints) Performing minimization step: 1323. Total energy = 7144.4049 kcal/mol (7137.1279 without restraints) Performing minimization step: 1324. Total energy = 7138.9442 kcal/mol (7131.6696 without restraints) Performing minimization step: 1325. Total energy = 7133.4913 kcal/mol (7126.2192 without restraints) Performing minimization step: 1326. Total energy = 7128.0456 kcal/mol (7120.7757 without restraints) Performing minimization step: 1327. Total energy = 7122.6079 kcal/mol (7115.3404 without restraints) Performing minimization step: 1328. Total energy = 7117.1772 kcal/mol (7109.9121 without restraints) Performing minimization step: 1329. Total energy = 7111.7546 kcal/mol (7104.4918 without restraints) Performing minimization step: 1330. Total energy = 7106.3394 kcal/mol (7099.0789 without restraints) Performing minimization step: 1331. Total energy = 7100.9314 kcal/mol (7093.6733 without restraints) Performing minimization step: 1332. Total energy = 7095.5312 kcal/mol (7088.2754 without restraints) Performing minimization step: 1333. Total energy = 7090.1385 kcal/mol (7082.8851 without restraints) Performing minimization step: 1334. Total energy = 7084.7532 kcal/mol (7077.5021 without restraints) Performing minimization step: 1335. Total energy = 7079.3755 kcal/mol (7072.1268 without restraints) Performing minimization step: 1336. Total energy = 7074.0052 kcal/mol (7066.7588 without restraints) Performing minimization step: 1337. Total energy = 7068.6427 kcal/mol (7061.3985 without restraints) Performing minimization step: 1338. Total energy = 7063.2872 kcal/mol (7056.0454 without restraints) Performing minimization step: 1339. Total energy = 7057.9393 kcal/mol (7050.6998 without restraints) Performing minimization step: 1340. Total energy = 7052.5987 kcal/mol (7045.3615 without restraints) Performing minimization step: 1341. Total energy = 7047.2655 kcal/mol (7040.0307 without restraints) Performing minimization step: 1342. Total energy = 7041.9397 kcal/mol (7034.7072 without restraints) Performing minimization step: 1343. Total energy = 7036.6213 kcal/mol (7029.3910 without restraints) Performing minimization step: 1344. Total energy = 7031.3103 kcal/mol (7024.0824 without restraints) Performing minimization step: 1345. Total energy = 7026.0065 kcal/mol (7018.7808 without restraints) Performing minimization step: 1346. Total energy = 7020.7095 kcal/mol (7013.4861 without restraints) Performing minimization step: 1347. Total energy = 7015.4203 kcal/mol (7008.1993 without restraints) Performing minimization step: 1348. Total energy = 7010.1384 kcal/mol (7002.9196 without restraints) Performing minimization step: 1349. Total energy = 7004.8630 kcal/mol (6997.6465 without restraints) Performing minimization step: 1350. Total energy = 6999.5957 kcal/mol (6992.3815 without restraints) Performing minimization step: 1351. Total energy = 6994.3354 kcal/mol (6987.1234 without restraints) Performing minimization step: 1352. Total energy = 6989.0823 kcal/mol (6981.8726 without restraints) Performing minimization step: 1353. Total energy = 6983.8366 kcal/mol (6976.6291 without restraints) Performing minimization step: 1354. Total energy = 6978.5980 kcal/mol (6971.3928 without restraints) Performing minimization step: 1355. Total energy = 6973.3665 kcal/mol (6966.1636 without restraints) Performing minimization step: 1356. Total energy = 6968.1419 kcal/mol (6960.9411 without restraints) Performing minimization step: 1357. Total energy = 6962.9246 kcal/mol (6955.7261 without restraints) Performing minimization step: 1358. Total energy = 6957.7142 kcal/mol (6950.5179 without restraints) Performing minimization step: 1359. Total energy = 6952.5109 kcal/mol (6945.3168 without restraints) Performing minimization step: 1360. Total energy = 6947.3150 kcal/mol (6940.1232 without restraints) Performing minimization step: 1361. Total energy = 6942.1258 kcal/mol (6934.9363 without restraints) Performing minimization step: 1362. Total energy = 6936.9438 kcal/mol (6929.7564 without restraints) Performing minimization step: 1363. Total energy = 6931.7689 kcal/mol (6924.5837 without restraints) Performing minimization step: 1364. Total energy = 6926.6012 kcal/mol (6919.4183 without restraints) Performing minimization step: 1365. Total energy = 6921.4401 kcal/mol (6914.2594 without restraints) Performing minimization step: 1366. Total energy = 6916.2860 kcal/mol (6909.1075 without restraints) Performing minimization step: 1367. Total energy = 6911.1390 kcal/mol (6903.9627 without restraints) Performing minimization step: 1368. Total energy = 6905.9991 kcal/mol (6898.8251 without restraints) Performing minimization step: 1369. Total energy = 6900.8660 kcal/mol (6893.6941 without restraints) Performing minimization step: 1370. Total energy = 6895.7397 kcal/mol (6888.5701 without restraints) Performing minimization step: 1371. Total energy = 6890.6209 kcal/mol (6883.4534 without restraints) Performing minimization step: 1372. Total energy = 6885.5084 kcal/mol (6878.3427 without restraints) Performing minimization step: 1373. Total energy = 6880.4031 kcal/mol (6873.2400 without restraints) Performing minimization step: 1374. Total energy = 6875.3047 kcal/mol (6868.1437 without restraints) Performing minimization step: 1375. Total energy = 6870.2131 kcal/mol (6863.0543 without restraints) Performing minimization step: 1376. Total energy = 6865.1284 kcal/mol (6857.9717 without restraints) Performing minimization step: 1377. Total energy = 6860.0506 kcal/mol (6852.8962 without restraints) Performing minimization step: 1378. Total energy = 6854.9796 kcal/mol (6847.8272 without restraints) Performing minimization step: 1379. Total energy = 6849.9151 kcal/mol (6842.7649 without restraints) Performing minimization step: 1380. Total energy = 6844.8574 kcal/mol (6837.7095 without restraints) Performing minimization step: 1381. Total energy = 6839.8072 kcal/mol (6832.6613 without restraints) Performing minimization step: 1382. Total energy = 6834.7632 kcal/mol (6827.6195 without restraints) Performing minimization step: 1383. Total energy = 6829.7264 kcal/mol (6822.5848 without restraints) Performing minimization step: 1384. Total energy = 6824.6962 kcal/mol (6817.5568 without restraints) Performing minimization step: 1385. Total energy = 6819.6726 kcal/mol (6812.5353 without restraints) Performing minimization step: 1386. Total energy = 6814.6554 kcal/mol (6807.5202 without restraints) Performing minimization step: 1387. Total energy = 6809.6456 kcal/mol (6802.5125 without restraints) Performing minimization step: 1388. Total energy = 6804.6419 kcal/mol (6797.5109 without restraints) Performing minimization step: 1389. Total energy = 6799.6450 kcal/mol (6792.5161 without restraints) Performing minimization step: 1390. Total energy = 6794.6546 kcal/mol (6787.5279 without restraints) Performing minimization step: 1391. Total energy = 6789.6707 kcal/mol (6782.5461 without restraints) Performing minimization step: 1392. Total energy = 6784.6935 kcal/mol (6777.5710 without restraints) Performing minimization step: 1393. Total energy = 6779.7230 kcal/mol (6772.6026 without restraints) Performing minimization step: 1394. Total energy = 6774.7593 kcal/mol (6767.6409 without restraints) Performing minimization step: 1395. Total energy = 6769.8019 kcal/mol (6762.6857 without restraints) Performing minimization step: 1396. Total energy = 6764.8512 kcal/mol (6757.7371 without restraints) Performing minimization step: 1397. Total energy = 6759.9072 kcal/mol (6752.7952 without restraints) Performing minimization step: 1398. Total energy = 6754.9696 kcal/mol (6747.8596 without restraints) Performing minimization step: 1399. Total energy = 6750.0388 kcal/mol (6742.9309 without restraints) Performing minimization step: 1400. Total energy = 6745.1142 kcal/mol (6738.0084 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 6740.1961 kcal/mol (6733.0924 without restraints) Performing minimization step: 1402. Total energy = 6735.2845 kcal/mol (6728.1829 without restraints) Performing minimization step: 1403. Total energy = 6730.3793 kcal/mol (6723.2797 without restraints) Performing minimization step: 1404. Total energy = 6725.4806 kcal/mol (6718.3830 without restraints) Performing minimization step: 1405. Total energy = 6720.5885 kcal/mol (6713.4929 without restraints) Performing minimization step: 1406. Total energy = 6715.7026 kcal/mol (6708.6092 without restraints) Performing minimization step: 1407. Total energy = 6710.8232 kcal/mol (6703.7318 without restraints) Performing minimization step: 1408. Total energy = 6705.9503 kcal/mol (6698.8611 without restraints) Performing minimization step: 1409. Total energy = 6701.0839 kcal/mol (6693.9966 without restraints) Performing minimization step: 1410. Total energy = 6696.2239 kcal/mol (6689.1387 without restraints) Performing minimization step: 1411. Total energy = 6691.3704 kcal/mol (6684.2872 without restraints) Performing minimization step: 1412. Total energy = 6686.5229 kcal/mol (6679.4418 without restraints) Performing minimization step: 1413. Total energy = 6681.6822 kcal/mol (6674.6032 without restraints) Performing minimization step: 1414. Total energy = 6676.8472 kcal/mol (6669.7701 without restraints) Performing minimization step: 1415. Total energy = 6672.0188 kcal/mol (6664.9437 without restraints) Performing minimization step: 1416. Total energy = 6667.1970 kcal/mol (6660.1239 without restraints) Performing minimization step: 1417. Total energy = 6662.3810 kcal/mol (6655.3100 without restraints) Performing minimization step: 1418. Total energy = 6657.5713 kcal/mol (6650.5022 without restraints) Performing minimization step: 1419. Total energy = 6652.7682 kcal/mol (6645.7012 without restraints) Performing minimization step: 1420. Total energy = 6647.9716 kcal/mol (6640.9066 without restraints) Performing minimization step: 1421. Total energy = 6643.1809 kcal/mol (6636.1179 without restraints) Performing minimization step: 1422. Total energy = 6638.3965 kcal/mol (6631.3354 without restraints) Performing minimization step: 1423. Total energy = 6633.6187 kcal/mol (6626.5596 without restraints) Performing minimization step: 1424. Total energy = 6628.8471 kcal/mol (6621.7900 without restraints) Performing minimization step: 1425. Total energy = 6624.0812 kcal/mol (6617.0260 without restraints) Performing minimization step: 1426. Total energy = 6619.3213 kcal/mol (6612.2683 without restraints) Performing minimization step: 1427. Total energy = 6614.5679 kcal/mol (6607.5168 without restraints) Performing minimization step: 1428. Total energy = 6609.8207 kcal/mol (6602.7716 without restraints) Performing minimization step: 1429. Total energy = 6605.0797 kcal/mol (6598.0327 without restraints) Performing minimization step: 1430. Total energy = 6600.3450 kcal/mol (6593.2998 without restraints) Performing minimization step: 1431. Total energy = 6595.6167 kcal/mol (6588.5736 without restraints) Performing minimization step: 1432. Total energy = 6590.8938 kcal/mol (6583.8526 without restraints) Performing minimization step: 1433. Total energy = 6586.1771 kcal/mol (6579.1379 without restraints) Performing minimization step: 1434. Total energy = 6581.4665 kcal/mol (6574.4291 without restraints) Performing minimization step: 1435. Total energy = 6576.7619 kcal/mol (6569.7265 without restraints) Performing minimization step: 1436. Total energy = 6572.0637 kcal/mol (6565.0303 without restraints) Performing minimization step: 1437. Total energy = 6567.3714 kcal/mol (6560.3399 without restraints) Performing minimization step: 1438. Total energy = 6562.6851 kcal/mol (6555.6555 without restraints) Performing minimization step: 1439. Total energy = 6558.0051 kcal/mol (6550.9775 without restraints) Performing minimization step: 1440. Total energy = 6553.3309 kcal/mol (6546.3052 without restraints) Performing minimization step: 1441. Total energy = 6548.6626 kcal/mol (6541.6389 without restraints) Performing minimization step: 1442. Total energy = 6544.0004 kcal/mol (6536.9786 without restraints) Performing minimization step: 1443. Total energy = 6539.3445 kcal/mol (6532.3247 without restraints) Performing minimization step: 1444. Total energy = 6534.6947 kcal/mol (6527.6768 without restraints) Performing minimization step: 1445. Total energy = 6530.0505 kcal/mol (6523.0345 without restraints) Performing minimization step: 1446. Total energy = 6525.4120 kcal/mol (6518.3978 without restraints) Performing minimization step: 1447. Total energy = 6520.7795 kcal/mol (6513.7672 without restraints) Performing minimization step: 1448. Total energy = 6516.1532 kcal/mol (6509.1429 without restraints) Performing minimization step: 1449. Total energy = 6511.5327 kcal/mol (6504.5244 without restraints) Performing minimization step: 1450. Total energy = 6506.9178 kcal/mol (6499.9113 without restraints) Performing minimization step: 1451. Total energy = 6502.3094 kcal/mol (6495.3049 without restraints) Performing minimization step: 1452. Total energy = 6497.7061 kcal/mol (6490.7032 without restraints) Performing minimization step: 1453. Total energy = 6493.1091 kcal/mol (6486.1083 without restraints) Performing minimization step: 1454. Total energy = 6488.5186 kcal/mol (6481.5198 without restraints) Performing minimization step: 1455. Total energy = 6483.9335 kcal/mol (6476.9365 without restraints) Performing minimization step: 1456. Total energy = 6479.3541 kcal/mol (6472.3590 without restraints) Performing minimization step: 1457. Total energy = 6474.7804 kcal/mol (6467.7872 without restraints) Performing minimization step: 1458. Total energy = 6470.2128 kcal/mol (6463.2214 without restraints) Performing minimization step: 1459. Total energy = 6465.6509 kcal/mol (6458.6614 without restraints) Performing minimization step: 1460. Total energy = 6461.0951 kcal/mol (6454.1076 without restraints) Performing minimization step: 1461. Total energy = 6456.5452 kcal/mol (6449.5596 without restraints) Performing minimization step: 1462. Total energy = 6452.0009 kcal/mol (6445.0170 without restraints) Performing minimization step: 1463. Total energy = 6447.4622 kcal/mol (6440.4802 without restraints) Performing minimization step: 1464. Total energy = 6442.9293 kcal/mol (6435.9491 without restraints) Performing minimization step: 1465. Total energy = 6438.4019 kcal/mol (6431.4236 without restraints) Performing minimization step: 1466. Total energy = 6433.8805 kcal/mol (6426.9040 without restraints) Performing minimization step: 1467. Total energy = 6429.3647 kcal/mol (6422.3901 without restraints) Performing minimization step: 1468. Total energy = 6424.8548 kcal/mol (6417.8821 without restraints) Performing minimization step: 1469. Total energy = 6420.3504 kcal/mol (6413.3795 without restraints) Performing minimization step: 1470. Total energy = 6415.8518 kcal/mol (6408.8828 without restraints) Performing minimization step: 1471. Total energy = 6411.3590 kcal/mol (6404.3918 without restraints) Performing minimization step: 1472. Total energy = 6406.8722 kcal/mol (6399.9068 without restraints) Performing minimization step: 1473. Total energy = 6402.3903 kcal/mol (6395.4267 without restraints) Performing minimization step: 1474. Total energy = 6397.9144 kcal/mol (6390.9527 without restraints) Performing minimization step: 1475. Total energy = 6393.4444 kcal/mol (6386.4845 without restraints) Performing minimization step: 1476. Total energy = 6388.9798 kcal/mol (6382.0217 without restraints) Performing minimization step: 1477. Total energy = 6384.5209 kcal/mol (6377.5646 without restraints) Performing minimization step: 1478. Total energy = 6380.0676 kcal/mol (6373.1131 without restraints) Performing minimization step: 1479. Total energy = 6375.6200 kcal/mol (6368.6672 without restraints) Performing minimization step: 1480. Total energy = 6371.1780 kcal/mol (6364.2271 without restraints) Performing minimization step: 1481. Total energy = 6366.7414 kcal/mol (6359.7923 without restraints) Performing minimization step: 1482. Total energy = 6362.3105 kcal/mol (6355.3632 without restraints) Performing minimization step: 1483. Total energy = 6357.8853 kcal/mol (6350.9398 without restraints) Performing minimization step: 1484. Total energy = 6353.4654 kcal/mol (6346.5217 without restraints) Performing minimization step: 1485. Total energy = 6349.0512 kcal/mol (6342.1092 without restraints) Performing minimization step: 1486. Total energy = 6344.6423 kcal/mol (6337.7022 without restraints) Performing minimization step: 1487. Total energy = 6340.2396 kcal/mol (6333.3014 without restraints) Performing minimization step: 1488. Total energy = 6335.8422 kcal/mol (6328.9056 without restraints) Performing minimization step: 1489. Total energy = 6331.4501 kcal/mol (6324.5154 without restraints) Performing minimization step: 1490. Total energy = 6327.0636 kcal/mol (6320.1308 without restraints) Performing minimization step: 1491. Total energy = 6322.6826 kcal/mol (6315.7514 without restraints) Performing minimization step: 1492. Total energy = 6318.3070 kcal/mol (6311.3777 without restraints) Performing minimization step: 1493. Total energy = 6313.9362 kcal/mol (6307.0085 without restraints) Performing minimization step: 1494. Total energy = 6309.5711 kcal/mol (6302.6452 without restraints) Performing minimization step: 1495. Total energy = 6305.2117 kcal/mol (6298.2876 without restraints) Performing minimization step: 1496. Total energy = 6300.8578 kcal/mol (6293.9354 without restraints) Performing minimization step: 1497. Total energy = 6296.5093 kcal/mol (6289.5887 without restraints) Performing minimization step: 1498. Total energy = 6292.1664 kcal/mol (6285.2476 without restraints) Performing minimization step: 1499. Total energy = 6287.8289 kcal/mol (6280.9118 without restraints) Performing minimization step: 1500. Total energy = 6283.4967 kcal/mol (6276.5814 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 6279.1699 kcal/mol (6272.2563 without restraints) Performing minimization step: 1502. Total energy = 6274.8486 kcal/mol (6267.9368 without restraints) Performing minimization step: 1503. Total energy = 6270.5327 kcal/mol (6263.6224 without restraints) Performing minimization step: 1504. Total energy = 6266.2219 kcal/mol (6259.3135 without restraints) Performing minimization step: 1505. Total energy = 6261.9166 kcal/mol (6255.0100 without restraints) Performing minimization step: 1506. Total energy = 6257.6168 kcal/mol (6250.7119 without restraints) Performing minimization step: 1507. Total energy = 6253.3223 kcal/mol (6246.4192 without restraints) Performing minimization step: 1508. Total energy = 6249.0329 kcal/mol (6242.1313 without restraints) Performing minimization step: 1509. Total energy = 6244.7492 kcal/mol (6237.8494 without restraints) Performing minimization step: 1510. Total energy = 6240.4707 kcal/mol (6233.5727 without restraints) Performing minimization step: 1511. Total energy = 6236.1974 kcal/mol (6229.3010 without restraints) Performing minimization step: 1512. Total energy = 6231.9292 kcal/mol (6225.0346 without restraints) Performing minimization step: 1513. Total energy = 6227.6666 kcal/mol (6220.7739 without restraints) Performing minimization step: 1514. Total energy = 6223.4092 kcal/mol (6216.5180 without restraints) Performing minimization step: 1515. Total energy = 6219.1572 kcal/mol (6212.2677 without restraints) Performing minimization step: 1516. Total energy = 6214.9101 kcal/mol (6208.0223 without restraints) Performing minimization step: 1517. Total energy = 6210.6683 kcal/mol (6203.7822 without restraints) Performing minimization step: 1518. Total energy = 6206.4317 kcal/mol (6199.5473 without restraints) Performing minimization step: 1519. Total energy = 6202.2002 kcal/mol (6195.3175 without restraints) Performing minimization step: 1520. Total energy = 6197.9741 kcal/mol (6191.0930 without restraints) Performing minimization step: 1521. Total energy = 6193.7534 kcal/mol (6186.8740 without restraints) Performing minimization step: 1522. Total energy = 6189.5384 kcal/mol (6182.6608 without restraints) Performing minimization step: 1523. Total energy = 6185.3282 kcal/mol (6178.4523 without restraints) Performing minimization step: 1524. Total energy = 6181.1231 kcal/mol (6174.2487 without restraints) Performing minimization step: 1525. Total energy = 6176.9230 kcal/mol (6170.0503 without restraints) Performing minimization step: 1526. Total energy = 6172.7280 kcal/mol (6165.8571 without restraints) Performing minimization step: 1527. Total energy = 6168.5381 kcal/mol (6161.6688 without restraints) Performing minimization step: 1528. Total energy = 6164.3534 kcal/mol (6157.4857 without restraints) Performing minimization step: 1529. Total energy = 6160.1737 kcal/mol (6153.3077 without restraints) Performing minimization step: 1530. Total energy = 6155.9995 kcal/mol (6149.1352 without restraints) Performing minimization step: 1531. Total energy = 6151.8303 kcal/mol (6144.9676 without restraints) Performing minimization step: 1532. Total energy = 6147.6661 kcal/mol (6140.8049 without restraints) Performing minimization step: 1533. Total energy = 6143.5069 kcal/mol (6136.6476 without restraints) Performing minimization step: 1534. Total energy = 6139.3531 kcal/mol (6132.4954 without restraints) Performing minimization step: 1535. Total energy = 6135.2043 kcal/mol (6128.3482 without restraints) Performing minimization step: 1536. Total energy = 6131.0607 kcal/mol (6124.2064 without restraints) Performing minimization step: 1537. Total energy = 6126.9221 kcal/mol (6120.0694 without restraints) Performing minimization step: 1538. Total energy = 6122.7886 kcal/mol (6115.9375 without restraints) Performing minimization step: 1539. Total energy = 6118.6604 kcal/mol (6111.8111 without restraints) Performing minimization step: 1540. Total energy = 6114.5370 kcal/mol (6107.6892 without restraints) Performing minimization step: 1541. Total energy = 6110.4187 kcal/mol (6103.5724 without restraints) Performing minimization step: 1542. Total energy = 6106.3050 kcal/mol (6099.4605 without restraints) Performing minimization step: 1543. Total energy = 6102.1968 kcal/mol (6095.3538 without restraints) Performing minimization step: 1544. Total energy = 6098.0938 kcal/mol (6091.2523 without restraints) Performing minimization step: 1545. Total energy = 6093.9953 kcal/mol (6087.1555 without restraints) Performing minimization step: 1546. Total energy = 6089.9021 kcal/mol (6083.0641 without restraints) Performing minimization step: 1547. Total energy = 6085.8139 kcal/mol (6078.9774 without restraints) Performing minimization step: 1548. Total energy = 6081.7309 kcal/mol (6074.8960 without restraints) Performing minimization step: 1549. Total energy = 6077.6527 kcal/mol (6070.8195 without restraints) Performing minimization step: 1550. Total energy = 6073.5793 kcal/mol (6066.7477 without restraints) Performing minimization step: 1551. Total energy = 6069.5110 kcal/mol (6062.6809 without restraints) Performing minimization step: 1552. Total energy = 6065.4475 kcal/mol (6058.6190 without restraints) Performing minimization step: 1553. Total energy = 6061.3886 kcal/mol (6054.5617 without restraints) Performing minimization step: 1554. Total energy = 6057.3349 kcal/mol (6050.5097 without restraints) Performing minimization step: 1555. Total energy = 6053.2863 kcal/mol (6046.4626 without restraints) Performing minimization step: 1556. Total energy = 6049.2425 kcal/mol (6042.4204 without restraints) Performing minimization step: 1557. Total energy = 6045.2037 kcal/mol (6038.3832 without restraints) Performing minimization step: 1558. Total energy = 6041.1700 kcal/mol (6034.3511 without restraints) Performing minimization step: 1559. Total energy = 6037.1415 kcal/mol (6030.3241 without restraints) Performing minimization step: 1560. Total energy = 6033.1174 kcal/mol (6026.3016 without restraints) Performing minimization step: 1561. Total energy = 6029.0981 kcal/mol (6022.2839 without restraints) Performing minimization step: 1562. Total energy = 6025.0838 kcal/mol (6018.2711 without restraints) Performing minimization step: 1563. Total energy = 6021.0742 kcal/mol (6014.2632 without restraints) Performing minimization step: 1564. Total energy = 6017.0703 kcal/mol (6010.2609 without restraints) Performing minimization step: 1565. Total energy = 6013.0708 kcal/mol (6006.2629 without restraints) Performing minimization step: 1566. Total energy = 6009.0764 kcal/mol (6002.2702 without restraints) Performing minimization step: 1567. Total energy = 6005.0867 kcal/mol (5998.2819 without restraints) Performing minimization step: 1568. Total energy = 6001.1015 kcal/mol (5994.2982 without restraints) Performing minimization step: 1569. Total energy = 5997.1216 kcal/mol (5990.3200 without restraints) Performing minimization step: 1570. Total energy = 5993.1462 kcal/mol (5986.3461 without restraints) Performing minimization step: 1571. Total energy = 5989.1755 kcal/mol (5982.3769 without restraints) Performing minimization step: 1572. Total energy = 5985.2095 kcal/mol (5978.4124 without restraints) Performing minimization step: 1573. Total energy = 5981.2481 kcal/mol (5974.4526 without restraints) Performing minimization step: 1574. Total energy = 5977.2917 kcal/mol (5970.4978 without restraints) Performing minimization step: 1575. Total energy = 5973.3402 kcal/mol (5966.5478 without restraints) Performing minimization step: 1576. Total energy = 5969.3933 kcal/mol (5962.6025 without restraints) Performing minimization step: 1577. Total energy = 5965.4512 kcal/mol (5958.6619 without restraints) Performing minimization step: 1578. Total energy = 5961.5139 kcal/mol (5954.7262 without restraints) Performing minimization step: 1579. Total energy = 5957.5811 kcal/mol (5950.7947 without restraints) Performing minimization step: 1580. Total energy = 5953.6536 kcal/mol (5946.8688 without restraints) Performing minimization step: 1581. Total energy = 5949.7306 kcal/mol (5942.9474 without restraints) Performing minimization step: 1582. Total energy = 5945.8118 kcal/mol (5939.0300 without restraints) Performing minimization step: 1583. Total energy = 5941.8983 kcal/mol (5935.1181 without restraints) Performing minimization step: 1584. Total energy = 5937.9893 kcal/mol (5931.2106 without restraints) Performing minimization step: 1585. Total energy = 5934.0849 kcal/mol (5927.3077 without restraints) Performing minimization step: 1586. Total energy = 5930.1855 kcal/mol (5923.4101 without restraints) Performing minimization step: 1587. Total energy = 5926.2908 kcal/mol (5919.5166 without restraints) Performing minimization step: 1588. Total energy = 5922.4003 kcal/mol (5915.6277 without restraints) Performing minimization step: 1589. Total energy = 5918.5148 kcal/mol (5911.7437 without restraints) Performing minimization step: 1590. Total energy = 5914.6343 kcal/mol (5907.8646 without restraints) Performing minimization step: 1591. Total energy = 5910.7580 kcal/mol (5903.9899 without restraints) Performing minimization step: 1592. Total energy = 5906.8867 kcal/mol (5900.1201 without restraints) Performing minimization step: 1593. Total energy = 5903.0199 kcal/mol (5896.2547 without restraints) Performing minimization step: 1594. Total energy = 5899.1577 kcal/mol (5892.3940 without restraints) Performing minimization step: 1595. Total energy = 5895.3001 kcal/mol (5888.5379 without restraints) Performing minimization step: 1596. Total energy = 5891.4476 kcal/mol (5884.6869 without restraints) Performing minimization step: 1597. Total energy = 5887.5994 kcal/mol (5880.8402 without restraints) Performing minimization step: 1598. Total energy = 5883.7554 kcal/mol (5876.9977 without restraints) Performing minimization step: 1599. Total energy = 5879.9168 kcal/mol (5873.1606 without restraints) Performing minimization step: 1600. Total energy = 5876.0818 kcal/mol (5869.3271 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 5872.2519 kcal/mol (5865.4986 without restraints) Performing minimization step: 1602. Total energy = 5868.4264 kcal/mol (5861.6744 without restraints) Performing minimization step: 1603. Total energy = 5864.6054 kcal/mol (5857.8550 without restraints) Performing minimization step: 1604. Total energy = 5860.7893 kcal/mol (5854.0404 without restraints) Performing minimization step: 1605. Total energy = 5856.9774 kcal/mol (5850.2299 without restraints) Performing minimization step: 1606. Total energy = 5853.1702 kcal/mol (5846.4242 without restraints) Performing minimization step: 1607. Total energy = 5849.3678 kcal/mol (5842.6232 without restraints) Performing minimization step: 1608. Total energy = 5845.5699 kcal/mol (5838.8268 without restraints) Performing minimization step: 1609. Total energy = 5841.7763 kcal/mol (5835.0347 without restraints) Performing minimization step: 1610. Total energy = 5837.9877 kcal/mol (5831.2475 without restraints) Performing minimization step: 1611. Total energy = 5834.2031 kcal/mol (5827.4643 without restraints) Performing minimization step: 1612. Total energy = 5830.4228 kcal/mol (5823.6854 without restraints) Performing minimization step: 1613. Total energy = 5826.6474 kcal/mol (5819.9115 without restraints) Performing minimization step: 1614. Total energy = 5822.8764 kcal/mol (5816.1421 without restraints) Performing minimization step: 1615. Total energy = 5819.1098 kcal/mol (5812.3768 without restraints) Performing minimization step: 1616. Total energy = 5815.3478 kcal/mol (5808.6162 without restraints) Performing minimization step: 1617. Total energy = 5811.5904 kcal/mol (5804.8602 without restraints) Performing minimization step: 1618. Total energy = 5807.8373 kcal/mol (5801.1086 without restraints) Performing minimization step: 1619. Total energy = 5804.0887 kcal/mol (5797.3616 without restraints) Performing minimization step: 1620. Total energy = 5800.3445 kcal/mol (5793.6187 without restraints) Performing minimization step: 1621. Total energy = 5796.6050 kcal/mol (5789.8807 without restraints) Performing minimization step: 1622. Total energy = 5792.8702 kcal/mol (5786.1473 without restraints) Performing minimization step: 1623. Total energy = 5789.1397 kcal/mol (5782.4182 without restraints) Performing minimization step: 1624. Total energy = 5785.4130 kcal/mol (5778.6929 without restraints) Performing minimization step: 1625. Total energy = 5781.6915 kcal/mol (5774.9728 without restraints) Performing minimization step: 1626. Total energy = 5777.9739 kcal/mol (5771.2566 without restraints) Performing minimization step: 1627. Total energy = 5774.2615 kcal/mol (5767.5456 without restraints) Performing minimization step: 1628. Total energy = 5770.5528 kcal/mol (5763.8384 without restraints) Performing minimization step: 1629. Total energy = 5766.8486 kcal/mol (5760.1356 without restraints) Performing minimization step: 1630. Total energy = 5763.1488 kcal/mol (5756.4371 without restraints) Performing minimization step: 1631. Total energy = 5759.4533 kcal/mol (5752.7431 without restraints) Performing minimization step: 1632. Total energy = 5755.7624 kcal/mol (5749.0535 without restraints) Performing minimization step: 1633. Total energy = 5752.0763 kcal/mol (5745.3688 without restraints) Performing minimization step: 1634. Total energy = 5748.3940 kcal/mol (5741.6879 without restraints) Performing minimization step: 1635. Total energy = 5744.7160 kcal/mol (5738.0113 without restraints) Performing minimization step: 1636. Total energy = 5741.0429 kcal/mol (5734.3396 without restraints) Performing minimization step: 1637. Total energy = 5737.3736 kcal/mol (5730.6717 without restraints) Performing minimization step: 1638. Total energy = 5733.7089 kcal/mol (5727.0084 without restraints) Performing minimization step: 1639. Total energy = 5730.0483 kcal/mol (5723.3492 without restraints) Performing minimization step: 1640. Total energy = 5726.3923 kcal/mol (5719.6945 without restraints) Performing minimization step: 1641. Total energy = 5722.7409 kcal/mol (5716.0445 without restraints) Performing minimization step: 1642. Total energy = 5719.0937 kcal/mol (5712.3987 without restraints) Performing minimization step: 1643. Total energy = 5715.4508 kcal/mol (5708.7571 without restraints) Performing minimization step: 1644. Total energy = 5711.8120 kcal/mol (5705.1197 without restraints) Performing minimization step: 1645. Total energy = 5708.1773 kcal/mol (5701.4866 without restraints) Performing minimization step: 1646. Total energy = 5704.5472 kcal/mol (5697.8576 without restraints) Performing minimization step: 1647. Total energy = 5700.9211 kcal/mol (5694.2329 without restraints) Performing minimization step: 1648. Total energy = 5697.2993 kcal/mol (5690.6125 without restraints) Performing minimization step: 1649. Total energy = 5693.6818 kcal/mol (5686.9963 without restraints) Performing minimization step: 1650. Total energy = 5690.0689 kcal/mol (5683.3848 without restraints) Performing minimization step: 1651. Total energy = 5686.4599 kcal/mol (5679.7771 without restraints) Performing minimization step: 1652. Total energy = 5682.8552 kcal/mol (5676.1738 without restraints) Performing minimization step: 1653. Total energy = 5679.2547 kcal/mol (5672.5746 without restraints) Performing minimization step: 1654. Total energy = 5675.6583 kcal/mol (5668.9796 without restraints) Performing minimization step: 1655. Total energy = 5672.0664 kcal/mol (5665.3890 without restraints) Performing minimization step: 1656. Total energy = 5668.4785 kcal/mol (5661.8024 without restraints) Performing minimization step: 1657. Total energy = 5664.8950 kcal/mol (5658.2203 without restraints) Performing minimization step: 1658. Total energy = 5661.3155 kcal/mol (5654.6421 without restraints) Performing minimization step: 1659. Total energy = 5657.7404 kcal/mol (5651.0684 without restraints) Performing minimization step: 1660. Total energy = 5654.1693 kcal/mol (5647.4986 without restraints) Performing minimization step: 1661. Total energy = 5650.6035 kcal/mol (5643.9342 without restraints) Performing minimization step: 1662. Total energy = 5647.0414 kcal/mol (5640.3734 without restraints) Performing minimization step: 1663. Total energy = 5643.4831 kcal/mol (5636.8164 without restraints) Performing minimization step: 1664. Total energy = 5639.9294 kcal/mol (5633.2641 without restraints) Performing minimization step: 1665. Total energy = 5636.3796 kcal/mol (5629.7155 without restraints) Performing minimization step: 1666. Total energy = 5632.8340 kcal/mol (5626.1713 without restraints) Performing minimization step: 1667. Total energy = 5629.2924 kcal/mol (5622.6310 without restraints) Performing minimization step: 1668. Total energy = 5625.7557 kcal/mol (5619.0955 without restraints) Performing minimization step: 1669. Total energy = 5622.2229 kcal/mol (5615.5642 without restraints) Performing minimization step: 1670. Total energy = 5618.6937 kcal/mol (5612.0364 without restraints) Performing minimization step: 1671. Total energy = 5615.1691 kcal/mol (5608.5129 without restraints) Performing minimization step: 1672. Total energy = 5611.6481 kcal/mol (5604.9932 without restraints) Performing minimization step: 1673. Total energy = 5608.1313 kcal/mol (5601.4777 without restraints) Performing minimization step: 1674. Total energy = 5604.6190 kcal/mol (5597.9668 without restraints) Performing minimization step: 1675. Total energy = 5601.1107 kcal/mol (5594.4599 without restraints) Performing minimization step: 1676. Total energy = 5597.6068 kcal/mol (5590.9571 without restraints) Performing minimization step: 1677. Total energy = 5594.1066 kcal/mol (5587.4582 without restraints) Performing minimization step: 1678. Total energy = 5590.6106 kcal/mol (5583.9635 without restraints) Performing minimization step: 1679. Total energy = 5587.1184 kcal/mol (5580.4725 without restraints) Performing minimization step: 1680. Total energy = 5583.6308 kcal/mol (5576.9864 without restraints) Performing minimization step: 1681. Total energy = 5580.1474 kcal/mol (5573.5041 without restraints) Performing minimization step: 1682. Total energy = 5576.6680 kcal/mol (5570.0262 without restraints) Performing minimization step: 1683. Total energy = 5573.1924 kcal/mol (5566.5517 without restraints) Performing minimization step: 1684. Total energy = 5569.7205 kcal/mol (5563.0811 without restraints) Performing minimization step: 1685. Total energy = 5566.2532 kcal/mol (5559.6151 without restraints) Performing minimization step: 1686. Total energy = 5562.7897 kcal/mol (5556.1529 without restraints) Performing minimization step: 1687. Total energy = 5559.3308 kcal/mol (5552.6952 without restraints) Performing minimization step: 1688. Total energy = 5555.8757 kcal/mol (5549.2414 without restraints) Performing minimization step: 1689. Total energy = 5552.4242 kcal/mol (5545.7912 without restraints) Performing minimization step: 1690. Total energy = 5548.9769 kcal/mol (5542.3451 without restraints) Performing minimization step: 1691. Total energy = 5545.5337 kcal/mol (5538.9032 without restraints) Performing minimization step: 1692. Total energy = 5542.0950 kcal/mol (5535.4658 without restraints) Performing minimization step: 1693. Total energy = 5538.6597 kcal/mol (5532.0316 without restraints) Performing minimization step: 1694. Total energy = 5535.2286 kcal/mol (5528.6020 without restraints) Performing minimization step: 1695. Total energy = 5531.8015 kcal/mol (5525.1761 without restraints) Performing minimization step: 1696. Total energy = 5528.3788 kcal/mol (5521.7547 without restraints) Performing minimization step: 1697. Total energy = 5524.9598 kcal/mol (5518.3369 without restraints) Performing minimization step: 1698. Total energy = 5521.5448 kcal/mol (5514.9231 without restraints) Performing minimization step: 1699. Total energy = 5518.1337 kcal/mol (5511.5132 without restraints) Performing minimization step: 1700. Total energy = 5514.7270 kcal/mol (5508.1079 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 5511.3239 kcal/mol (5504.7058 without restraints) Performing minimization step: 1702. Total energy = 5507.9246 kcal/mol (5501.3078 without restraints) Performing minimization step: 1703. Total energy = 5504.5294 kcal/mol (5497.9139 without restraints) Performing minimization step: 1704. Total energy = 5501.1384 kcal/mol (5494.5241 without restraints) Performing minimization step: 1705. Total energy = 5497.7511 kcal/mol (5491.1380 without restraints) Performing minimization step: 1706. Total energy = 5494.3677 kcal/mol (5487.7558 without restraints) Performing minimization step: 1707. Total energy = 5490.9883 kcal/mol (5484.3777 without restraints) Performing minimization step: 1708. Total energy = 5487.6130 kcal/mol (5481.0036 without restraints) Performing minimization step: 1709. Total energy = 5484.2414 kcal/mol (5477.6332 without restraints) Performing minimization step: 1710. Total energy = 5480.8735 kcal/mol (5474.2666 without restraints) Performing minimization step: 1711. Total energy = 5477.5100 kcal/mol (5470.9043 without restraints) Performing minimization step: 1712. Total energy = 5474.1502 kcal/mol (5467.5457 without restraints) Performing minimization step: 1713. Total energy = 5470.7940 kcal/mol (5464.1908 without restraints) Performing minimization step: 1714. Total energy = 5467.4421 kcal/mol (5460.8401 without restraints) Performing minimization step: 1715. Total energy = 5464.0944 kcal/mol (5457.4936 without restraints) Performing minimization step: 1716. Total energy = 5460.7502 kcal/mol (5454.1506 without restraints) Performing minimization step: 1717. Total energy = 5457.4100 kcal/mol (5450.8116 without restraints) Performing minimization step: 1718. Total energy = 5454.0737 kcal/mol (5447.4765 without restraints) Performing minimization step: 1719. Total energy = 5450.7413 kcal/mol (5444.1454 without restraints) Performing minimization step: 1720. Total energy = 5447.4126 kcal/mol (5440.8177 without restraints) Performing minimization step: 1721. Total energy = 5444.0878 kcal/mol (5437.4942 without restraints) Performing minimization step: 1722. Total energy = 5440.7669 kcal/mol (5434.1745 without restraints) Performing minimization step: 1723. Total energy = 5437.4498 kcal/mol (5430.8586 without restraints) Performing minimization step: 1724. Total energy = 5434.1366 kcal/mol (5427.5466 without restraints) Performing minimization step: 1725. Total energy = 5430.8275 kcal/mol (5424.2387 without restraints) Performing minimization step: 1726. Total energy = 5427.5221 kcal/mol (5420.9347 without restraints) Performing minimization step: 1727. Total energy = 5424.2206 kcal/mol (5417.6342 without restraints) Performing minimization step: 1728. Total energy = 5420.9228 kcal/mol (5414.3373 without restraints) Performing minimization step: 1729. Total energy = 5417.6284 kcal/mol (5411.0443 without restraints) Performing minimization step: 1730. Total energy = 5414.3386 kcal/mol (5407.7560 without restraints) Performing minimization step: 1731. Total energy = 5411.0525 kcal/mol (5404.4708 without restraints) Performing minimization step: 1732. Total energy = 5407.7699 kcal/mol (5401.1894 without restraints) Performing minimization step: 1733. Total energy = 5404.4910 kcal/mol (5397.9116 without restraints) Performing minimization step: 1734. Total energy = 5401.2160 kcal/mol (5394.6378 without restraints) Performing minimization step: 1735. Total energy = 5397.9447 kcal/mol (5391.3677 without restraints) Performing minimization step: 1736. Total energy = 5394.6775 kcal/mol (5388.1015 without restraints) Performing minimization step: 1737. Total energy = 5391.4136 kcal/mol (5384.8389 without restraints) Performing minimization step: 1738. Total energy = 5388.1538 kcal/mol (5381.5803 without restraints) Performing minimization step: 1739. Total energy = 5384.8981 kcal/mol (5378.3257 without restraints) Performing minimization step: 1740. Total energy = 5381.6459 kcal/mol (5375.0747 without restraints) Performing minimization step: 1741. Total energy = 5378.3977 kcal/mol (5371.8277 without restraints) Performing minimization step: 1742. Total energy = 5375.1531 kcal/mol (5368.5842 without restraints) Performing minimization step: 1743. Total energy = 5371.9120 kcal/mol (5365.3443 without restraints) Performing minimization step: 1744. Total energy = 5368.6751 kcal/mol (5362.1086 without restraints) Performing minimization step: 1745. Total energy = 5365.4417 kcal/mol (5358.8763 without restraints) Performing minimization step: 1746. Total energy = 5362.2126 kcal/mol (5355.6484 without restraints) Performing minimization step: 1747. Total energy = 5358.9866 kcal/mol (5352.4235 without restraints) Performing minimization step: 1748. Total energy = 5355.7643 kcal/mol (5349.2022 without restraints) Performing minimization step: 1749. Total energy = 5352.5456 kcal/mol (5345.9847 without restraints) Performing minimization step: 1750. Total energy = 5349.3306 kcal/mol (5342.7709 without restraints) Performing minimization step: 1751. Total energy = 5346.1192 kcal/mol (5339.5606 without restraints) Performing minimization step: 1752. Total energy = 5342.9117 kcal/mol (5336.3543 without restraints) Performing minimization step: 1753. Total energy = 5339.7084 kcal/mol (5333.1519 without restraints) Performing minimization step: 1754. Total energy = 5336.5088 kcal/mol (5329.9538 without restraints) Performing minimization step: 1755. Total energy = 5333.3126 kcal/mol (5326.7586 without restraints) Performing minimization step: 1756. Total energy = 5330.1199 kcal/mol (5323.5669 without restraints) Performing minimization step: 1757. Total energy = 5326.9311 kcal/mol (5320.3793 without restraints) Performing minimization step: 1758. Total energy = 5323.7457 kcal/mol (5317.1952 without restraints) Performing minimization step: 1759. Total energy = 5320.5646 kcal/mol (5314.0151 without restraints) Performing minimization step: 1760. Total energy = 5317.3871 kcal/mol (5310.8388 without restraints) Performing minimization step: 1761. Total energy = 5314.2130 kcal/mol (5307.6658 without restraints) Performing minimization step: 1762. Total energy = 5311.0427 kcal/mol (5304.4966 without restraints) Performing minimization step: 1763. Total energy = 5307.8757 kcal/mol (5301.3306 without restraints) Performing minimization step: 1764. Total energy = 5304.7125 kcal/mol (5298.1686 without restraints) Performing minimization step: 1765. Total energy = 5301.5529 kcal/mol (5295.0101 without restraints) Performing minimization step: 1766. Total energy = 5298.3970 kcal/mol (5291.8553 without restraints) Performing minimization step: 1767. Total energy = 5295.2446 kcal/mol (5288.7040 without restraints) Performing minimization step: 1768. Total energy = 5292.0960 kcal/mol (5285.5566 without restraints) Performing minimization step: 1769. Total energy = 5288.9516 kcal/mol (5282.4132 without restraints) Performing minimization step: 1770. Total energy = 5285.8100 kcal/mol (5279.2727 without restraints) Performing minimization step: 1771. Total energy = 5282.6724 kcal/mol (5276.1364 without restraints) Performing minimization step: 1772. Total energy = 5279.5380 kcal/mol (5273.0030 without restraints) Performing minimization step: 1773. Total energy = 5276.4076 kcal/mol (5269.8737 without restraints) Performing minimization step: 1774. Total energy = 5273.2807 kcal/mol (5266.7478 without restraints) Performing minimization step: 1775. Total energy = 5270.1572 kcal/mol (5263.6255 without restraints) Performing minimization step: 1776. Total energy = 5267.0375 kcal/mol (5260.5069 without restraints) Performing minimization step: 1777. Total energy = 5263.9215 kcal/mol (5257.3919 without restraints) Performing minimization step: 1778. Total energy = 5260.8092 kcal/mol (5254.2806 without restraints) Performing minimization step: 1779. Total energy = 5257.7004 kcal/mol (5251.1729 without restraints) Performing minimization step: 1780. Total energy = 5254.5949 kcal/mol (5248.0686 without restraints) Performing minimization step: 1781. Total energy = 5251.4928 kcal/mol (5244.9677 without restraints) Performing minimization step: 1782. Total energy = 5248.3942 kcal/mol (5241.8700 without restraints) Performing minimization step: 1783. Total energy = 5245.2995 kcal/mol (5238.7764 without restraints) Performing minimization step: 1784. Total energy = 5242.2084 kcal/mol (5235.6863 without restraints) Performing minimization step: 1785. Total energy = 5239.1209 kcal/mol (5232.6000 without restraints) Performing minimization step: 1786. Total energy = 5236.0369 kcal/mol (5229.5170 without restraints) Performing minimization step: 1787. Total energy = 5232.9559 kcal/mol (5226.4370 without restraints) Performing minimization step: 1788. Total energy = 5229.8791 kcal/mol (5223.3613 without restraints) Performing minimization step: 1789. Total energy = 5226.8059 kcal/mol (5220.2892 without restraints) Performing minimization step: 1790. Total energy = 5223.7364 kcal/mol (5217.2207 without restraints) Performing minimization step: 1791. Total energy = 5220.6702 kcal/mol (5214.1556 without restraints) Performing minimization step: 1792. Total energy = 5217.6073 kcal/mol (5211.0938 without restraints) Performing minimization step: 1793. Total energy = 5214.5480 kcal/mol (5208.0355 without restraints) Performing minimization step: 1794. Total energy = 5211.4922 kcal/mol (5204.9807 without restraints) Performing minimization step: 1795. Total energy = 5208.4397 kcal/mol (5201.9293 without restraints) Performing minimization step: 1796. Total energy = 5205.3910 kcal/mol (5198.8818 without restraints) Performing minimization step: 1797. Total energy = 5202.3457 kcal/mol (5195.8375 without restraints) Performing minimization step: 1798. Total energy = 5199.3039 kcal/mol (5192.7967 without restraints) Performing minimization step: 1799. Total energy = 5196.2658 kcal/mol (5189.7596 without restraints) Performing minimization step: 1800. Total energy = 5193.2313 kcal/mol (5186.7262 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 5190.2001 kcal/mol (5183.6960 without restraints) Performing minimization step: 1802. Total energy = 5187.1719 kcal/mol (5180.6688 without restraints) Performing minimization step: 1803. Total energy = 5184.1477 kcal/mol (5177.6457 without restraints) Performing minimization step: 1804. Total energy = 5181.1267 kcal/mol (5174.6258 without restraints) Performing minimization step: 1805. Total energy = 5178.1092 kcal/mol (5171.6092 without restraints) Performing minimization step: 1806. Total energy = 5175.0951 kcal/mol (5168.5962 without restraints) Performing minimization step: 1807. Total energy = 5172.0844 kcal/mol (5165.5866 without restraints) Performing minimization step: 1808. Total energy = 5169.0774 kcal/mol (5162.5805 without restraints) Performing minimization step: 1809. Total energy = 5166.0736 kcal/mol (5159.5777 without restraints) Performing minimization step: 1810. Total energy = 5163.0731 kcal/mol (5156.5782 without restraints) Performing minimization step: 1811. Total energy = 5160.0765 kcal/mol (5153.5827 without restraints) Performing minimization step: 1812. Total energy = 5157.0824 kcal/mol (5150.5896 without restraints) Performing minimization step: 1813. Total energy = 5154.0923 kcal/mol (5147.6006 without restraints) Performing minimization step: 1814. Total energy = 5151.1058 kcal/mol (5144.6151 without restraints) Performing minimization step: 1815. Total energy = 5148.1221 kcal/mol (5141.6324 without restraints) Performing minimization step: 1816. Total energy = 5145.1422 kcal/mol (5138.6535 without restraints) Performing minimization step: 1817. Total energy = 5142.1657 kcal/mol (5135.6781 without restraints) Performing minimization step: 1818. Total energy = 5139.1928 kcal/mol (5132.7061 without restraints) Performing minimization step: 1819. Total energy = 5136.2230 kcal/mol (5129.7373 without restraints) Performing minimization step: 1820. Total energy = 5133.2568 kcal/mol (5126.7721 without restraints) Performing minimization step: 1821. Total energy = 5130.2941 kcal/mol (5123.8104 without restraints) Performing minimization step: 1822. Total energy = 5127.3346 kcal/mol (5120.8520 without restraints) Performing minimization step: 1823. Total energy = 5124.3785 kcal/mol (5117.8969 without restraints) Performing minimization step: 1824. Total energy = 5121.4258 kcal/mol (5114.9452 without restraints) Performing minimization step: 1825. Total energy = 5118.4766 kcal/mol (5111.9970 without restraints) Performing minimization step: 1826. Total energy = 5115.5306 kcal/mol (5109.0520 without restraints) Performing minimization step: 1827. Total energy = 5112.5880 kcal/mol (5106.1104 without restraints) Performing minimization step: 1828. Total energy = 5109.6488 kcal/mol (5103.1721 without restraints) Performing minimization step: 1829. Total energy = 5106.7129 kcal/mol (5100.2372 without restraints) Performing minimization step: 1830. Total energy = 5103.7809 kcal/mol (5097.3063 without restraints) Performing minimization step: 1831. Total energy = 5100.8518 kcal/mol (5094.3782 without restraints) Performing minimization step: 1832. Total energy = 5097.9259 kcal/mol (5091.4533 without restraints) Performing minimization step: 1833. Total energy = 5095.0032 kcal/mol (5088.5316 without restraints) Performing minimization step: 1834. Total energy = 5092.0841 kcal/mol (5085.6134 without restraints) Performing minimization step: 1835. Total energy = 5089.1682 kcal/mol (5082.6986 without restraints) Performing minimization step: 1836. Total energy = 5086.2554 kcal/mol (5079.7866 without restraints) Performing minimization step: 1837. Total energy = 5083.3465 kcal/mol (5076.8787 without restraints) Performing minimization step: 1838. Total energy = 5080.4405 kcal/mol (5073.9737 without restraints) Performing minimization step: 1839. Total energy = 5077.5378 kcal/mol (5071.0719 without restraints) Performing minimization step: 1840. Total energy = 5074.6387 kcal/mol (5068.1739 without restraints) Performing minimization step: 1841. Total energy = 5071.7425 kcal/mol (5065.2786 without restraints) Performing minimization step: 1842. Total energy = 5068.8497 kcal/mol (5062.3868 without restraints) Performing minimization step: 1843. Total energy = 5065.9603 kcal/mol (5059.4984 without restraints) Performing minimization step: 1844. Total energy = 5063.0743 kcal/mol (5056.6133 without restraints) Performing minimization step: 1845. Total energy = 5060.1913 kcal/mol (5053.7311 without restraints) Performing minimization step: 1846. Total energy = 5057.3115 kcal/mol (5050.8525 without restraints) Performing minimization step: 1847. Total energy = 5054.4351 kcal/mol (5047.9770 without restraints) Performing minimization step: 1848. Total energy = 5051.5618 kcal/mol (5045.1047 without restraints) Performing minimization step: 1849. Total energy = 5048.6920 kcal/mol (5042.2357 without restraints) Performing minimization step: 1850. Total energy = 5045.8255 kcal/mol (5039.3702 without restraints) Performing minimization step: 1851. Total energy = 5042.9623 kcal/mol (5036.5081 without restraints) Performing minimization step: 1852. Total energy = 5040.1021 kcal/mol (5033.6487 without restraints) Performing minimization step: 1853. Total energy = 5037.2451 kcal/mol (5030.7927 without restraints) Performing minimization step: 1854. Total energy = 5034.3914 kcal/mol (5027.9399 without restraints) Performing minimization step: 1855. Total energy = 5031.5413 kcal/mol (5025.0908 without restraints) Performing minimization step: 1856. Total energy = 5028.6941 kcal/mol (5022.2446 without restraints) Performing minimization step: 1857. Total energy = 5025.8505 kcal/mol (5019.4020 without restraints) Performing minimization step: 1858. Total energy = 5023.0095 kcal/mol (5016.5617 without restraints) Performing minimization step: 1859. Total energy = 5020.1725 kcal/mol (5013.7257 without restraints) Performing minimization step: 1860. Total energy = 5017.3381 kcal/mol (5010.8922 without restraints) Performing minimization step: 1861. Total energy = 5014.5069 kcal/mol (5008.0620 without restraints) Performing minimization step: 1862. Total energy = 5011.6792 kcal/mol (5005.2352 without restraints) Performing minimization step: 1863. Total energy = 5008.8542 kcal/mol (5002.4112 without restraints) Performing minimization step: 1864. Total energy = 5006.0326 kcal/mol (4999.5905 without restraints) Performing minimization step: 1865. Total energy = 5003.2142 kcal/mol (4996.7731 without restraints) Performing minimization step: 1866. Total energy = 5000.3990 kcal/mol (4993.9587 without restraints) Performing minimization step: 1867. Total energy = 4997.5870 kcal/mol (4991.1476 without restraints) Performing minimization step: 1868. Total energy = 4994.7782 kcal/mol (4988.3397 without restraints) Performing minimization step: 1869. Total energy = 4991.9725 kcal/mol (4985.5351 without restraints) Performing minimization step: 1870. Total energy = 4989.1700 kcal/mol (4982.7335 without restraints) Performing minimization step: 1871. Total energy = 4986.3710 kcal/mol (4979.9354 without restraints) Performing minimization step: 1872. Total energy = 4983.5752 kcal/mol (4977.1405 without restraints) Performing minimization step: 1873. Total energy = 4980.7820 kcal/mol (4974.3481 without restraints) Performing minimization step: 1874. Total energy = 4977.9916 kcal/mol (4971.5587 without restraints) Performing minimization step: 1875. Total energy = 4975.2045 kcal/mol (4968.7724 without restraints) Performing minimization step: 1876. Total energy = 4972.4207 kcal/mol (4965.9897 without restraints) Performing minimization step: 1877. Total energy = 4969.6405 kcal/mol (4963.2103 without restraints) Performing minimization step: 1878. Total energy = 4966.8631 kcal/mol (4960.4339 without restraints) Performing minimization step: 1879. Total energy = 4964.0891 kcal/mol (4957.6608 without restraints) Performing minimization step: 1880. Total energy = 4961.3181 kcal/mol (4954.8906 without restraints) Performing minimization step: 1881. Total energy = 4958.5502 kcal/mol (4952.1238 without restraints) Performing minimization step: 1882. Total energy = 4955.7853 kcal/mol (4949.3596 without restraints) Performing minimization step: 1883. Total energy = 4953.0234 kcal/mol (4946.5986 without restraints) Performing minimization step: 1884. Total energy = 4950.2647 kcal/mol (4943.8408 without restraints) Performing minimization step: 1885. Total energy = 4947.5095 kcal/mol (4941.0865 without restraints) Performing minimization step: 1886. Total energy = 4944.7578 kcal/mol (4938.3358 without restraints) Performing minimization step: 1887. Total energy = 4942.0086 kcal/mol (4935.5874 without restraints) Performing minimization step: 1888. Total energy = 4939.2619 kcal/mol (4932.8416 without restraints) Performing minimization step: 1889. Total energy = 4936.5188 kcal/mol (4930.0993 without restraints) Performing minimization step: 1890. Total energy = 4933.7787 kcal/mol (4927.3601 without restraints) Performing minimization step: 1891. Total energy = 4931.0417 kcal/mol (4924.6240 without restraints) Performing minimization step: 1892. Total energy = 4928.3079 kcal/mol (4921.8911 without restraints) Performing minimization step: 1893. Total energy = 4925.5771 kcal/mol (4919.1612 without restraints) Performing minimization step: 1894. Total energy = 4922.8491 kcal/mol (4916.4340 without restraints) Performing minimization step: 1895. Total energy = 4920.1244 kcal/mol (4913.7104 without restraints) Performing minimization step: 1896. Total energy = 4917.4036 kcal/mol (4910.9903 without restraints) Performing minimization step: 1897. Total energy = 4914.6851 kcal/mol (4908.2728 without restraints) Performing minimization step: 1898. Total energy = 4911.9695 kcal/mol (4905.5579 without restraints) Performing minimization step: 1899. Total energy = 4909.2569 kcal/mol (4902.8462 without restraints) Performing minimization step: 1900. Total energy = 4906.5472 kcal/mol (4900.1375 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 4903.8408 kcal/mol (4897.4319 without restraints) Performing minimization step: 1902. Total energy = 4901.1375 kcal/mol (4894.7295 without restraints) Performing minimization step: 1903. Total energy = 4898.4379 kcal/mol (4892.0307 without restraints) Performing minimization step: 1904. Total energy = 4895.7405 kcal/mol (4889.3342 without restraints) Performing minimization step: 1905. Total energy = 4893.0461 kcal/mol (4886.6406 without restraints) Performing minimization step: 1906. Total energy = 4890.3547 kcal/mol (4883.9500 without restraints) Performing minimization step: 1907. Total energy = 4887.6662 kcal/mol (4881.2623 without restraints) Performing minimization step: 1908. Total energy = 4884.9806 kcal/mol (4878.5775 without restraints) Performing minimization step: 1909. Total energy = 4882.2984 kcal/mol (4875.8964 without restraints) Performing minimization step: 1910. Total energy = 4879.6200 kcal/mol (4873.2189 without restraints) Performing minimization step: 1911. Total energy = 4876.9437 kcal/mol (4870.5433 without restraints) Performing minimization step: 1912. Total energy = 4874.2703 kcal/mol (4867.8707 without restraints) Performing minimization step: 1913. Total energy = 4871.6002 kcal/mol (4865.2016 without restraints) Performing minimization step: 1914. Total energy = 4868.9330 kcal/mol (4862.5351 without restraints) Performing minimization step: 1915. Total energy = 4866.2687 kcal/mol (4859.8717 without restraints) Performing minimization step: 1916. Total energy = 4863.6074 kcal/mol (4857.2112 without restraints) Performing minimization step: 1917. Total energy = 4860.9487 kcal/mol (4854.5533 without restraints) Performing minimization step: 1918. Total energy = 4858.2931 kcal/mol (4851.8985 without restraints) Performing minimization step: 1919. Total energy = 4855.6404 kcal/mol (4849.2468 without restraints) Performing minimization step: 1920. Total energy = 4852.9908 kcal/mol (4846.5978 without restraints) Performing minimization step: 1921. Total energy = 4850.3437 kcal/mol (4843.9517 without restraints) Performing minimization step: 1922. Total energy = 4847.7003 kcal/mol (4841.3091 without restraints) Performing minimization step: 1923. Total energy = 4845.0594 kcal/mol (4838.6691 without restraints) Performing minimization step: 1924. Total energy = 4842.4214 kcal/mol (4836.0319 without restraints) Performing minimization step: 1925. Total energy = 4839.7866 kcal/mol (4833.3981 without restraints) Performing minimization step: 1926. Total energy = 4837.1545 kcal/mol (4830.7667 without restraints) Performing minimization step: 1927. Total energy = 4834.5255 kcal/mol (4828.1384 without restraints) Performing minimization step: 1928. Total energy = 4831.8997 kcal/mol (4825.5135 without restraints) Performing minimization step: 1929. Total energy = 4829.2765 kcal/mol (4822.8910 without restraints) Performing minimization step: 1930. Total energy = 4826.6560 kcal/mol (4820.2714 without restraints) Performing minimization step: 1931. Total energy = 4824.0386 kcal/mol (4817.6548 without restraints) Performing minimization step: 1932. Total energy = 4821.4244 kcal/mol (4815.0415 without restraints) Performing minimization step: 1933. Total energy = 4818.8130 kcal/mol (4812.4311 without restraints) Performing minimization step: 1934. Total energy = 4816.2040 kcal/mol (4809.8227 without restraints) Performing minimization step: 1935. Total energy = 4813.5981 kcal/mol (4807.2176 without restraints) Performing minimization step: 1936. Total energy = 4810.9948 kcal/mol (4804.6150 without restraints) Performing minimization step: 1937. Total energy = 4808.3944 kcal/mol (4802.0155 without restraints) Performing minimization step: 1938. Total energy = 4805.7972 kcal/mol (4799.4191 without restraints) Performing minimization step: 1939. Total energy = 4803.2027 kcal/mol (4796.8253 without restraints) Performing minimization step: 1940. Total energy = 4800.6111 kcal/mol (4794.2346 without restraints) Performing minimization step: 1941. Total energy = 4798.0225 kcal/mol (4791.6468 without restraints) Performing minimization step: 1942. Total energy = 4795.4367 kcal/mol (4789.0618 without restraints) Performing minimization step: 1943. Total energy = 4792.8537 kcal/mol (4786.4796 without restraints) Performing minimization step: 1944. Total energy = 4790.2740 kcal/mol (4783.9008 without restraints) Performing minimization step: 1945. Total energy = 4787.6973 kcal/mol (4781.3248 without restraints) Performing minimization step: 1946. Total energy = 4785.1228 kcal/mol (4778.7511 without restraints) Performing minimization step: 1947. Total energy = 4782.5511 kcal/mol (4776.1801 without restraints) Performing minimization step: 1948. Total energy = 4779.9825 kcal/mol (4773.6124 without restraints) Performing minimization step: 1949. Total energy = 4777.4170 kcal/mol (4771.0478 without restraints) Performing minimization step: 1950. Total energy = 4774.8542 kcal/mol (4768.4856 without restraints) Performing minimization step: 1951. Total energy = 4772.2942 kcal/mol (4765.9264 without restraints) Performing minimization step: 1952. Total energy = 4769.7373 kcal/mol (4763.3702 without restraints) Performing minimization step: 1953. Total energy = 4767.1828 kcal/mol (4760.8165 without restraints) Performing minimization step: 1954. Total energy = 4764.6316 kcal/mol (4758.2662 without restraints) Performing minimization step: 1955. Total energy = 4762.0827 kcal/mol (4755.7180 without restraints) Performing minimization step: 1956. Total energy = 4759.5365 kcal/mol (4753.1726 without restraints) Performing minimization step: 1957. Total energy = 4756.9932 kcal/mol (4750.6301 without restraints) Performing minimization step: 1958. Total energy = 4754.4527 kcal/mol (4748.0903 without restraints) Performing minimization step: 1959. Total energy = 4751.9154 kcal/mol (4745.5538 without restraints) Performing minimization step: 1960. Total energy = 4749.3800 kcal/mol (4743.0192 without restraints) Performing minimization step: 1961. Total energy = 4746.8478 kcal/mol (4740.4878 without restraints) Performing minimization step: 1962. Total energy = 4744.3182 kcal/mol (4737.9590 without restraints) Performing minimization step: 1963. Total energy = 4741.7916 kcal/mol (4735.4331 without restraints) Performing minimization step: 1964. Total energy = 4739.2678 kcal/mol (4732.9100 without restraints) Performing minimization step: 1965. Total energy = 4736.7466 kcal/mol (4730.3896 without restraints) Performing minimization step: 1966. Total energy = 4734.2285 kcal/mol (4727.8724 without restraints) Performing minimization step: 1967. Total energy = 4731.7133 kcal/mol (4725.3579 without restraints) Performing minimization step: 1968. Total energy = 4729.2005 kcal/mol (4722.8458 without restraints) Performing minimization step: 1969. Total energy = 4726.6903 kcal/mol (4720.3363 without restraints) Performing minimization step: 1970. Total energy = 4724.1830 kcal/mol (4717.8298 without restraints) Performing minimization step: 1971. Total energy = 4721.6786 kcal/mol (4715.3262 without restraints) Performing minimization step: 1972. Total energy = 4719.1771 kcal/mol (4712.8254 without restraints) Performing minimization step: 1973. Total energy = 4716.6781 kcal/mol (4710.3270 without restraints) Performing minimization step: 1974. Total energy = 4714.1819 kcal/mol (4707.8317 without restraints) Performing minimization step: 1975. Total energy = 4711.6883 kcal/mol (4705.3388 without restraints) Performing minimization step: 1976. Total energy = 4709.1974 kcal/mol (4702.8487 without restraints) Performing minimization step: 1977. Total energy = 4706.7093 kcal/mol (4700.3613 without restraints) Performing minimization step: 1978. Total energy = 4704.2242 kcal/mol (4697.8772 without restraints) Performing minimization step: 1979. Total energy = 4701.7416 kcal/mol (4695.3951 without restraints) Performing minimization step: 1980. Total energy = 4699.2615 kcal/mol (4692.9157 without restraints) Performing minimization step: 1981. Total energy = 4696.7838 kcal/mol (4690.4387 without restraints) Performing minimization step: 1982. Total energy = 4694.3092 kcal/mol (4687.9650 without restraints) Performing minimization step: 1983. Total energy = 4691.8381 kcal/mol (4685.4946 without restraints) Performing minimization step: 1984. Total energy = 4689.3692 kcal/mol (4683.0265 without restraints) Performing minimization step: 1985. Total energy = 4686.9028 kcal/mol (4680.5607 without restraints) Performing minimization step: 1986. Total energy = 4684.4390 kcal/mol (4678.0976 without restraints) Performing minimization step: 1987. Total energy = 4681.9778 kcal/mol (4675.6372 without restraints) Performing minimization step: 1988. Total energy = 4679.5193 kcal/mol (4673.1793 without restraints) Performing minimization step: 1989. Total energy = 4677.0633 kcal/mol (4670.7242 without restraints) Performing minimization step: 1990. Total energy = 4674.6102 kcal/mol (4668.2717 without restraints) Performing minimization step: 1991. Total energy = 4672.1599 kcal/mol (4665.8222 without restraints) Performing minimization step: 1992. Total energy = 4669.7121 kcal/mol (4663.3753 without restraints) Performing minimization step: 1993. Total energy = 4667.2675 kcal/mol (4660.9312 without restraints) Performing minimization step: 1994. Total energy = 4664.8252 kcal/mol (4658.4896 without restraints) Performing minimization step: 1995. Total energy = 4662.3853 kcal/mol (4656.0504 without restraints) Performing minimization step: 1996. Total energy = 4659.9482 kcal/mol (4653.6141 without restraints) Performing minimization step: 1997. Total energy = 4657.5139 kcal/mol (4651.1805 without restraints) Performing minimization step: 1998. Total energy = 4655.0822 kcal/mol (4648.7494 without restraints) Performing minimization step: 1999. Total energy = 4652.6527 kcal/mol (4646.3206 without restraints) Performing minimization step: 2000. Total energy = 4650.2267 kcal/mol (4643.8953 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 4647.8028 kcal/mol (4641.4725 without restraints) Performing minimization step: 2002. Total energy = 4645.3819 kcal/mol (4639.0519 without restraints) Performing minimization step: 2003. Total energy = 4642.9631 kcal/mol (4636.6339 without restraints) Performing minimization step: 2004. Total energy = 4640.5471 kcal/mol (4634.2186 without restraints) Performing minimization step: 2005. Total energy = 4638.1339 kcal/mol (4631.8061 without restraints) Performing minimization step: 2006. Total energy = 4635.7232 kcal/mol (4629.3961 without restraints) Performing minimization step: 2007. Total energy = 4633.3148 kcal/mol (4626.9884 without restraints) Performing minimization step: 2008. Total energy = 4630.9091 kcal/mol (4624.5834 without restraints) Performing minimization step: 2009. Total energy = 4628.5060 kcal/mol (4622.1810 without restraints) Performing minimization step: 2010. Total energy = 4626.1059 kcal/mol (4619.7816 without restraints) Performing minimization step: 2011. Total energy = 4623.7084 kcal/mol (4617.3848 without restraints) Performing minimization step: 2012. Total energy = 4621.3133 kcal/mol (4614.9904 without restraints) Performing minimization step: 2013. Total energy = 4618.9207 kcal/mol (4612.5985 without restraints) Performing minimization step: 2014. Total energy = 4616.5305 kcal/mol (4610.2090 without restraints) Performing minimization step: 2015. Total energy = 4614.1428 kcal/mol (4607.8219 without restraints) Performing minimization step: 2016. Total energy = 4611.7576 kcal/mol (4605.4374 without restraints) Performing minimization step: 2017. Total energy = 4609.3753 kcal/mol (4603.0560 without restraints) Performing minimization step: 2018. Total energy = 4606.9958 kcal/mol (4600.6770 without restraints) Performing minimization step: 2019. Total energy = 4604.6183 kcal/mol (4598.3001 without restraints) Performing minimization step: 2020. Total energy = 4602.2433 kcal/mol (4595.9260 without restraints) Performing minimization step: 2021. Total energy = 4599.8710 kcal/mol (4593.5542 without restraints) Performing minimization step: 2022. Total energy = 4597.5013 kcal/mol (4591.1852 without restraints) Performing minimization step: 2023. Total energy = 4595.1341 kcal/mol (4588.8185 without restraints) Performing minimization step: 2024. Total energy = 4592.7695 kcal/mol (4586.4549 without restraints) Performing minimization step: 2025. Total energy = 4590.4075 kcal/mol (4584.0934 without restraints) Performing minimization step: 2026. Total energy = 4588.0476 kcal/mol (4581.7342 without restraints) Performing minimization step: 2027. Total energy = 4585.6906 kcal/mol (4579.3779 without restraints) Performing minimization step: 2028. Total energy = 4583.3362 kcal/mol (4577.0241 without restraints) Performing minimization step: 2029. Total energy = 4580.9841 kcal/mol (4574.6728 without restraints) Performing minimization step: 2030. Total energy = 4578.6348 kcal/mol (4572.3240 without restraints) Performing minimization step: 2031. Total energy = 4576.2881 kcal/mol (4569.9780 without restraints) Performing minimization step: 2032. Total energy = 4573.9435 kcal/mol (4567.6341 without restraints) Performing minimization step: 2033. Total energy = 4571.6019 kcal/mol (4565.2931 without restraints) Performing minimization step: 2034. Total energy = 4569.2625 kcal/mol (4562.9544 without restraints) Performing minimization step: 2035. Total energy = 4566.9256 kcal/mol (4560.6181 without restraints) Performing minimization step: 2036. Total energy = 4564.5911 kcal/mol (4558.2843 without restraints) Performing minimization step: 2037. Total energy = 4562.2592 kcal/mol (4555.9530 without restraints) Performing minimization step: 2038. Total energy = 4559.9298 kcal/mol (4553.6243 without restraints) Performing minimization step: 2039. Total energy = 4557.6029 kcal/mol (4551.2980 without restraints) Performing minimization step: 2040. Total energy = 4555.2786 kcal/mol (4548.9744 without restraints) Performing minimization step: 2041. Total energy = 4552.9567 kcal/mol (4546.6531 without restraints) Performing minimization step: 2042. Total energy = 4550.6371 kcal/mol (4544.3341 without restraints) Performing minimization step: 2043. Total energy = 4548.3202 kcal/mol (4542.0180 without restraints) Performing minimization step: 2044. Total energy = 4546.0057 kcal/mol (4539.7041 without restraints) Performing minimization step: 2045. Total energy = 4543.6937 kcal/mol (4537.3926 without restraints) Performing minimization step: 2046. Total energy = 4541.3840 kcal/mol (4535.0837 without restraints) Performing minimization step: 2047. Total energy = 4539.0771 kcal/mol (4532.7773 without restraints) Performing minimization step: 2048. Total energy = 4536.7724 kcal/mol (4530.4735 without restraints) Performing minimization step: 2049. Total energy = 4534.4707 kcal/mol (4528.1723 without restraints) Performing minimization step: 2050. Total energy = 4532.1712 kcal/mol (4525.8734 without restraints) Performing minimization step: 2051. Total energy = 4529.8742 kcal/mol (4523.5771 without restraints) Performing minimization step: 2052. Total energy = 4527.5793 kcal/mol (4521.2827 without restraints) Performing minimization step: 2053. Total energy = 4525.2868 kcal/mol (4518.9909 without restraints) Performing minimization step: 2054. Total energy = 4522.9971 kcal/mol (4516.7019 without restraints) Performing minimization step: 2055. Total energy = 4520.7092 kcal/mol (4514.4146 without restraints) Performing minimization step: 2056. Total energy = 4518.4240 kcal/mol (4512.1300 without restraints) Performing minimization step: 2057. Total energy = 4516.1412 kcal/mol (4509.8479 without restraints) Performing minimization step: 2058. Total energy = 4513.8611 kcal/mol (4507.5683 without restraints) Performing minimization step: 2059. Total energy = 4511.5833 kcal/mol (4505.2912 without restraints) Performing minimization step: 2060. Total energy = 4509.3078 kcal/mol (4503.0163 without restraints) Performing minimization step: 2061. Total energy = 4507.0347 kcal/mol (4500.7438 without restraints) Performing minimization step: 2062. Total energy = 4504.7641 kcal/mol (4498.4740 without restraints) Performing minimization step: 2063. Total energy = 4502.4959 kcal/mol (4496.2063 without restraints) Performing minimization step: 2064. Total energy = 4500.2302 kcal/mol (4493.9413 without restraints) Performing minimization step: 2065. Total energy = 4497.9668 kcal/mol (4491.6783 without restraints) Performing minimization step: 2066. Total energy = 4495.7058 kcal/mol (4489.4179 without restraints) Performing minimization step: 2067. Total energy = 4493.4470 kcal/mol (4487.1598 without restraints) Performing minimization step: 2068. Total energy = 4491.1913 kcal/mol (4484.9047 without restraints) Performing minimization step: 2069. Total energy = 4488.9379 kcal/mol (4482.6519 without restraints) Performing minimization step: 2070. Total energy = 4486.6863 kcal/mol (4480.4010 without restraints) Performing minimization step: 2071. Total energy = 4484.4371 kcal/mol (4478.1524 without restraints) Performing minimization step: 2072. Total energy = 4482.1905 kcal/mol (4475.9063 without restraints) Performing minimization step: 2073. Total energy = 4479.9460 kcal/mol (4473.6626 without restraints) Performing minimization step: 2074. Total energy = 4477.7043 kcal/mol (4471.4213 without restraints) Performing minimization step: 2075. Total energy = 4475.4646 kcal/mol (4469.1824 without restraints) Performing minimization step: 2076. Total energy = 4473.2274 kcal/mol (4466.9456 without restraints) Performing minimization step: 2077. Total energy = 4470.9920 kcal/mol (4464.7109 without restraints) Performing minimization step: 2078. Total energy = 4468.7594 kcal/mol (4462.4788 without restraints) Performing minimization step: 2079. Total energy = 4466.5291 kcal/mol (4460.2491 without restraints) Performing minimization step: 2080. Total energy = 4464.3011 kcal/mol (4458.0217 without restraints) Performing minimization step: 2081. Total energy = 4462.0757 kcal/mol (4455.7969 without restraints) Performing minimization step: 2082. Total energy = 4459.8526 kcal/mol (4453.5744 without restraints) Performing minimization step: 2083. Total energy = 4457.6316 kcal/mol (4451.3540 without restraints) Performing minimization step: 2084. Total energy = 4455.4130 kcal/mol (4449.1360 without restraints) Performing minimization step: 2085. Total energy = 4453.1966 kcal/mol (4446.9202 without restraints) Performing minimization step: 2086. Total energy = 4450.9826 kcal/mol (4444.7068 without restraints) Performing minimization step: 2087. Total energy = 4448.7706 kcal/mol (4442.4954 without restraints) Performing minimization step: 2088. Total energy = 4446.5614 kcal/mol (4440.2867 without restraints) Performing minimization step: 2089. Total energy = 4444.3544 kcal/mol (4438.0804 without restraints) Performing minimization step: 2090. Total energy = 4442.1498 kcal/mol (4435.8763 without restraints) Performing minimization step: 2091. Total energy = 4439.9478 kcal/mol (4433.6748 without restraints) Performing minimization step: 2092. Total energy = 4437.7475 kcal/mol (4431.4751 without restraints) Performing minimization step: 2093. Total energy = 4435.5494 kcal/mol (4429.2776 without restraints) Performing minimization step: 2094. Total energy = 4433.3539 kcal/mol (4427.0827 without restraints) Performing minimization step: 2095. Total energy = 4431.1607 kcal/mol (4424.8900 without restraints) Performing minimization step: 2096. Total energy = 4428.9697 kcal/mol (4422.6996 without restraints) Performing minimization step: 2097. Total energy = 4426.7810 kcal/mol (4420.5115 without restraints) Performing minimization step: 2098. Total energy = 4424.5947 kcal/mol (4418.3258 without restraints) Performing minimization step: 2099. Total energy = 4422.4107 kcal/mol (4416.1424 without restraints) Performing minimization step: 2100. Total energy = 4420.2293 kcal/mol (4413.9615 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 4418.0503 kcal/mol (4411.7830 without restraints) Performing minimization step: 2102. Total energy = 4415.8735 kcal/mol (4409.6069 without restraints) Performing minimization step: 2103. Total energy = 4413.6986 kcal/mol (4407.4325 without restraints) Performing minimization step: 2104. Total energy = 4411.5261 kcal/mol (4405.2605 without restraints) Performing minimization step: 2105. Total energy = 4409.3553 kcal/mol (4403.0903 without restraints) Performing minimization step: 2106. Total energy = 4407.1873 kcal/mol (4400.9229 without restraints) Performing minimization step: 2107. Total energy = 4405.0217 kcal/mol (4398.7579 without restraints) Performing minimization step: 2108. Total energy = 4402.8581 kcal/mol (4396.5949 without restraints) Performing minimization step: 2109. Total energy = 4400.6972 kcal/mol (4394.4345 without restraints) Performing minimization step: 2110. Total energy = 4398.5385 kcal/mol (4392.2764 without restraints) Performing minimization step: 2111. Total energy = 4396.3818 kcal/mol (4390.1201 without restraints) Performing minimization step: 2112. Total energy = 4394.2269 kcal/mol (4387.9658 without restraints) Performing minimization step: 2113. Total energy = 4392.0744 kcal/mol (4385.8138 without restraints) Performing minimization step: 2114. Total energy = 4389.9239 kcal/mol (4383.6639 without restraints) Performing minimization step: 2115. Total energy = 4387.7756 kcal/mol (4381.5162 without restraints) Performing minimization step: 2116. Total energy = 4385.6296 kcal/mol (4379.3708 without restraints) Performing minimization step: 2117. Total energy = 4383.4864 kcal/mol (4377.2280 without restraints) Performing minimization step: 2118. Total energy = 4381.3452 kcal/mol (4375.0874 without restraints) Performing minimization step: 2119. Total energy = 4379.2059 kcal/mol (4372.9486 without restraints) Performing minimization step: 2120. Total energy = 4377.0689 kcal/mol (4370.8121 without restraints) Performing minimization step: 2121. Total energy = 4374.9342 kcal/mol (4368.6780 without restraints) Performing minimization step: 2122. Total energy = 4372.8017 kcal/mol (4366.5461 without restraints) Performing minimization step: 2123. Total energy = 4370.6715 kcal/mol (4364.4165 without restraints) Performing minimization step: 2124. Total energy = 4368.5435 kcal/mol (4362.2889 without restraints) Performing minimization step: 2125. Total energy = 4366.4181 kcal/mol (4360.1641 without restraints) Performing minimization step: 2126. Total energy = 4364.2946 kcal/mol (4358.0411 without restraints) Performing minimization step: 2127. Total energy = 4362.1732 kcal/mol (4355.9203 without restraints) Performing minimization step: 2128. Total energy = 4360.0542 kcal/mol (4353.8018 without restraints) Performing minimization step: 2129. Total energy = 4357.9372 kcal/mol (4351.6853 without restraints) Performing minimization step: 2130. Total energy = 4355.8226 kcal/mol (4349.5712 without restraints) Performing minimization step: 2131. Total energy = 4353.7098 kcal/mol (4347.4589 without restraints) Performing minimization step: 2132. Total energy = 4351.5993 kcal/mol (4345.3490 without restraints) Performing minimization step: 2133. Total energy = 4349.4911 kcal/mol (4343.2412 without restraints) Performing minimization step: 2134. Total energy = 4347.3850 kcal/mol (4341.1357 without restraints) Performing minimization step: 2135. Total energy = 4345.2812 kcal/mol (4339.0325 without restraints) Performing minimization step: 2136. Total energy = 4343.1792 kcal/mol (4336.9308 without restraints) Performing minimization step: 2137. Total energy = 4341.0793 kcal/mol (4334.8315 without restraints) Performing minimization step: 2138. Total energy = 4338.9817 kcal/mol (4332.7346 without restraints) Performing minimization step: 2139. Total energy = 4336.8860 kcal/mol (4330.6393 without restraints) Performing minimization step: 2140. Total energy = 4334.7929 kcal/mol (4328.5467 without restraints) Performing minimization step: 2141. Total energy = 4332.7018 kcal/mol (4326.4562 without restraints) Performing minimization step: 2142. Total energy = 4330.6128 kcal/mol (4324.3677 without restraints) Performing minimization step: 2143. Total energy = 4328.5261 kcal/mol (4322.2815 without restraints) Performing minimization step: 2144. Total energy = 4326.4413 kcal/mol (4320.1972 without restraints) Performing minimization step: 2145. Total energy = 4324.3587 kcal/mol (4318.1151 without restraints) Performing minimization step: 2146. Total energy = 4322.2785 kcal/mol (4316.0354 without restraints) Performing minimization step: 2147. Total energy = 4320.2002 kcal/mol (4313.9576 without restraints) Performing minimization step: 2148. Total energy = 4318.1240 kcal/mol (4311.8820 without restraints) Performing minimization step: 2149. Total energy = 4316.0498 kcal/mol (4309.8082 without restraints) Performing minimization step: 2150. Total energy = 4313.9781 kcal/mol (4307.7370 without restraints) Performing minimization step: 2151. Total energy = 4311.9080 kcal/mol (4305.6674 without restraints) Performing minimization step: 2152. Total energy = 4309.8402 kcal/mol (4303.6001 without restraints) Performing minimization step: 2153. Total energy = 4307.7743 kcal/mol (4301.5347 without restraints) Performing minimization step: 2154. Total energy = 4305.7105 kcal/mol (4299.4714 without restraints) Performing minimization step: 2155. Total energy = 4303.6497 kcal/mol (4297.4111 without restraints) Performing minimization step: 2156. Total energy = 4301.5902 kcal/mol (4295.3521 without restraints) Performing minimization step: 2157. Total energy = 4299.5334 kcal/mol (4293.2958 without restraints) Performing minimization step: 2158. Total energy = 4297.4782 kcal/mol (4291.2411 without restraints) Performing minimization step: 2159. Total energy = 4295.4249 kcal/mol (4289.1883 without restraints) Performing minimization step: 2160. Total energy = 4293.3739 kcal/mol (4287.1378 without restraints) Performing minimization step: 2161. Total energy = 4291.3252 kcal/mol (4285.0896 without restraints) Performing minimization step: 2162. Total energy = 4289.2784 kcal/mol (4283.0433 without restraints) Performing minimization step: 2163. Total energy = 4287.2338 kcal/mol (4280.9993 without restraints) Performing minimization step: 2164. Total energy = 4285.1913 kcal/mol (4278.9571 without restraints) Performing minimization step: 2165. Total energy = 4283.1507 kcal/mol (4276.9170 without restraints) Performing minimization step: 2166. Total energy = 4281.1120 kcal/mol (4274.8788 without restraints) Performing minimization step: 2167. Total energy = 4279.0760 kcal/mol (4272.8433 without restraints) Performing minimization step: 2168. Total energy = 4277.0419 kcal/mol (4270.8096 without restraints) Performing minimization step: 2169. Total energy = 4275.0096 kcal/mol (4268.7779 without restraints) Performing minimization step: 2170. Total energy = 4272.9798 kcal/mol (4266.7485 without restraints) Performing minimization step: 2171. Total energy = 4270.9514 kcal/mol (4264.7206 without restraints) Performing minimization step: 2172. Total energy = 4268.9252 kcal/mol (4262.6949 without restraints) Performing minimization step: 2173. Total energy = 4266.9012 kcal/mol (4260.6714 without restraints) Performing minimization step: 2174. Total energy = 4264.8793 kcal/mol (4258.6500 without restraints) Performing minimization step: 2175. Total energy = 4262.8590 kcal/mol (4256.6300 without restraints) Performing minimization step: 2176. Total energy = 4260.8410 kcal/mol (4254.6126 without restraints) Performing minimization step: 2177. Total energy = 4258.8258 kcal/mol (4252.5978 without restraints) Performing minimization step: 2178. Total energy = 4256.8119 kcal/mol (4250.5844 without restraints) Performing minimization step: 2179. Total energy = 4254.8002 kcal/mol (4248.5733 without restraints) Performing minimization step: 2180. Total energy = 4252.7912 kcal/mol (4246.5648 without restraints) Performing minimization step: 2181. Total energy = 4250.7838 kcal/mol (4244.5577 without restraints) Performing minimization step: 2182. Total energy = 4248.7783 kcal/mol (4242.5526 without restraints) Performing minimization step: 2183. Total energy = 4246.7745 kcal/mol (4240.5494 without restraints) Performing minimization step: 2184. Total energy = 4244.7729 kcal/mol (4238.5481 without restraints) Performing minimization step: 2185. Total energy = 4242.7737 kcal/mol (4236.5497 without restraints) Performing minimization step: 2186. Total energy = 4240.7767 kcal/mol (4234.5529 without restraints) Performing minimization step: 2187. Total energy = 4238.7811 kcal/mol (4232.5577 without restraints) Performing minimization step: 2188. Total energy = 4236.7877 kcal/mol (4230.5648 without restraints) Performing minimization step: 2189. Total energy = 4234.7958 kcal/mol (4228.5734 without restraints) Performing minimization step: 2190. Total energy = 4232.8055 kcal/mol (4226.5835 without restraints) Performing minimization step: 2191. Total energy = 4230.8185 kcal/mol (4224.5969 without restraints) Performing minimization step: 2192. Total energy = 4228.8329 kcal/mol (4222.6118 without restraints) Performing minimization step: 2193. Total energy = 4226.8492 kcal/mol (4220.6286 without restraints) Performing minimization step: 2194. Total energy = 4224.8677 kcal/mol (4218.6476 without restraints) Performing minimization step: 2195. Total energy = 4222.8882 kcal/mol (4216.6685 without restraints) Performing minimization step: 2196. Total energy = 4220.9104 kcal/mol (4214.6912 without restraints) Performing minimization step: 2197. Total energy = 4218.9349 kcal/mol (4212.7161 without restraints) Performing minimization step: 2198. Total energy = 4216.9613 kcal/mol (4210.7429 without restraints) Performing minimization step: 2199. Total energy = 4214.9897 kcal/mol (4208.7718 without restraints) Performing minimization step: 2200. Total energy = 4213.0202 kcal/mol (4206.8026 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 4211.0524 kcal/mol (4204.8353 without restraints) Performing minimization step: 2202. Total energy = 4209.0862 kcal/mol (4202.8696 without restraints) Performing minimization step: 2203. Total energy = 4207.1222 kcal/mol (4200.9061 without restraints) Performing minimization step: 2204. Total energy = 4205.1605 kcal/mol (4198.9449 without restraints) Performing minimization step: 2205. Total energy = 4203.2012 kcal/mol (4196.9859 without restraints) Performing minimization step: 2206. Total energy = 4201.2432 kcal/mol (4195.0284 without restraints) Performing minimization step: 2207. Total energy = 4199.2873 kcal/mol (4193.0728 without restraints) Performing minimization step: 2208. Total energy = 4197.3331 kcal/mol (4191.1191 without restraints) Performing minimization step: 2209. Total energy = 4195.3813 kcal/mol (4189.1678 without restraints) Performing minimization step: 2210. Total energy = 4193.4313 kcal/mol (4187.2182 without restraints) Performing minimization step: 2211. Total energy = 4191.4835 kcal/mol (4185.2710 without restraints) Performing minimization step: 2212. Total energy = 4189.5376 kcal/mol (4183.3254 without restraints) Performing minimization step: 2213. Total energy = 4187.5932 kcal/mol (4181.3814 without restraints) Performing minimization step: 2214. Total energy = 4185.6510 kcal/mol (4179.4396 without restraints) Performing minimization step: 2215. Total energy = 4183.7110 kcal/mol (4177.5000 without restraints) Performing minimization step: 2216. Total energy = 4181.7735 kcal/mol (4175.5631 without restraints) Performing minimization step: 2217. Total energy = 4179.8376 kcal/mol (4173.6274 without restraints) Performing minimization step: 2218. Total energy = 4177.9030 kcal/mol (4171.6933 without restraints) Performing minimization step: 2219. Total energy = 4175.9705 kcal/mol (4169.7614 without restraints) Performing minimization step: 2220. Total energy = 4174.0399 kcal/mol (4167.8311 without restraints) Performing minimization step: 2221. Total energy = 4172.1114 kcal/mol (4165.9030 without restraints) Performing minimization step: 2222. Total energy = 4170.1854 kcal/mol (4163.9774 without restraints) Performing minimization step: 2223. Total energy = 4168.2604 kcal/mol (4162.0528 without restraints) Performing minimization step: 2224. Total energy = 4166.3374 kcal/mol (4160.1302 without restraints) Performing minimization step: 2225. Total energy = 4164.4163 kcal/mol (4158.2096 without restraints) Performing minimization step: 2226. Total energy = 4162.4971 kcal/mol (4156.2908 without restraints) Performing minimization step: 2227. Total energy = 4160.5801 kcal/mol (4154.3740 without restraints) Performing minimization step: 2228. Total energy = 4158.6648 kcal/mol (4152.4593 without restraints) Performing minimization step: 2229. Total energy = 4156.7515 kcal/mol (4150.5464 without restraints) Performing minimization step: 2230. Total energy = 4154.8401 kcal/mol (4148.6354 without restraints) Performing minimization step: 2231. Total energy = 4152.9306 kcal/mol (4146.7263 without restraints) Performing minimization step: 2232. Total energy = 4151.0230 kcal/mol (4144.8191 without restraints) Performing minimization step: 2233. Total energy = 4149.1175 kcal/mol (4142.9140 without restraints) Performing minimization step: 2234. Total energy = 4147.2137 kcal/mol (4141.0104 without restraints) Performing minimization step: 2235. Total energy = 4145.3113 kcal/mol (4139.1087 without restraints) Performing minimization step: 2236. Total energy = 4143.4112 kcal/mol (4137.2089 without restraints) Performing minimization step: 2237. Total energy = 4141.5129 kcal/mol (4135.3111 without restraints) Performing minimization step: 2238. Total energy = 4139.6165 kcal/mol (4133.4150 without restraints) Performing minimization step: 2239. Total energy = 4137.7218 kcal/mol (4131.5208 without restraints) Performing minimization step: 2240. Total energy = 4135.8291 kcal/mol (4129.6285 without restraints) Performing minimization step: 2241. Total energy = 4133.9385 kcal/mol (4127.7384 without restraints) Performing minimization step: 2242. Total energy = 4132.0496 kcal/mol (4125.8498 without restraints) Performing minimization step: 2243. Total energy = 4130.1627 kcal/mol (4123.9633 without restraints) Performing minimization step: 2244. Total energy = 4128.2779 kcal/mol (4122.0789 without restraints) Performing minimization step: 2245. Total energy = 4126.3949 kcal/mol (4120.1962 without restraints) Performing minimization step: 2246. Total energy = 4124.5137 kcal/mol (4118.3154 without restraints) Performing minimization step: 2247. Total energy = 4122.6343 kcal/mol (4116.4364 without restraints) Performing minimization step: 2248. Total energy = 4120.7565 kcal/mol (4114.5591 without restraints) Performing minimization step: 2249. Total energy = 4118.8809 kcal/mol (4112.6839 without restraints) Performing minimization step: 2250. Total energy = 4117.0069 kcal/mol (4110.8101 without restraints) Performing minimization step: 2251. Total energy = 4115.1348 kcal/mol (4108.9384 without restraints) Performing minimization step: 2252. Total energy = 4113.2641 kcal/mol (4107.0681 without restraints) Performing minimization step: 2253. Total energy = 4111.3957 kcal/mol (4105.2002 without restraints) Performing minimization step: 2254. Total energy = 4109.5289 kcal/mol (4103.3337 without restraints) Performing minimization step: 2255. Total energy = 4107.6640 kcal/mol (4101.4692 without restraints) Performing minimization step: 2256. Total energy = 4105.8007 kcal/mol (4099.6062 without restraints) Performing minimization step: 2257. Total energy = 4103.9392 kcal/mol (4097.7452 without restraints) Performing minimization step: 2258. Total energy = 4102.0796 kcal/mol (4095.8859 without restraints) Performing minimization step: 2259. Total energy = 4100.2216 kcal/mol (4094.0282 without restraints) Performing minimization step: 2260. Total energy = 4098.3658 kcal/mol (4092.1728 without restraints) Performing minimization step: 2261. Total energy = 4096.5119 kcal/mol (4090.3193 without restraints) Performing minimization step: 2262. Total energy = 4094.6597 kcal/mol (4088.4675 without restraints) Performing minimization step: 2263. Total energy = 4092.8094 kcal/mol (4086.6176 without restraints) Performing minimization step: 2264. Total energy = 4090.9607 kcal/mol (4084.7693 without restraints) Performing minimization step: 2265. Total energy = 4089.1140 kcal/mol (4082.9229 without restraints) Performing minimization step: 2266. Total energy = 4087.2690 kcal/mol (4081.0783 without restraints) Performing minimization step: 2267. Total energy = 4085.4255 kcal/mol (4079.2352 without restraints) Performing minimization step: 2268. Total energy = 4083.5843 kcal/mol (4077.3944 without restraints) Performing minimization step: 2269. Total energy = 4081.7447 kcal/mol (4075.5551 without restraints) Performing minimization step: 2270. Total energy = 4079.9074 kcal/mol (4073.7181 without restraints) Performing minimization step: 2271. Total energy = 4078.0715 kcal/mol (4071.8826 without restraints) Performing minimization step: 2272. Total energy = 4076.2375 kcal/mol (4070.0490 without restraints) Performing minimization step: 2273. Total energy = 4074.4049 kcal/mol (4068.2168 without restraints) Performing minimization step: 2274. Total energy = 4072.5753 kcal/mol (4066.3875 without restraints) Performing minimization step: 2275. Total energy = 4070.7468 kcal/mol (4064.5594 without restraints) Performing minimization step: 2276. Total energy = 4068.9201 kcal/mol (4062.7330 without restraints) Performing minimization step: 2277. Total energy = 4067.0948 kcal/mol (4060.9081 without restraints) Performing minimization step: 2278. Total energy = 4065.2715 kcal/mol (4059.0851 without restraints) Performing minimization step: 2279. Total energy = 4063.4498 kcal/mol (4057.2638 without restraints) Performing minimization step: 2280. Total energy = 4061.6294 kcal/mol (4055.4438 without restraints) Performing minimization step: 2281. Total energy = 4059.8116 kcal/mol (4053.6263 without restraints) Performing minimization step: 2282. Total energy = 4057.9953 kcal/mol (4051.8104 without restraints) Performing minimization step: 2283. Total energy = 4056.1810 kcal/mol (4049.9964 without restraints) Performing minimization step: 2284. Total energy = 4054.3685 kcal/mol (4048.1843 without restraints) Performing minimization step: 2285. Total energy = 4052.5575 kcal/mol (4046.3736 without restraints) Performing minimization step: 2286. Total energy = 4050.7488 kcal/mol (4044.5653 without restraints) Performing minimization step: 2287. Total energy = 4048.9409 kcal/mol (4042.7577 without restraints) Performing minimization step: 2288. Total energy = 4047.1350 kcal/mol (4040.9521 without restraints) Performing minimization step: 2289. Total energy = 4045.3312 kcal/mol (4039.1487 without restraints) Performing minimization step: 2290. Total energy = 4043.5292 kcal/mol (4037.3471 without restraints) Performing minimization step: 2291. Total energy = 4041.7291 kcal/mol (4035.5473 without restraints) Performing minimization step: 2292. Total energy = 4039.9304 kcal/mol (4033.7489 without restraints) Performing minimization step: 2293. Total energy = 4038.1334 kcal/mol (4031.9523 without restraints) Performing minimization step: 2294. Total energy = 4036.3384 kcal/mol (4030.1576 without restraints) Performing minimization step: 2295. Total energy = 4034.5450 kcal/mol (4028.3646 without restraints) Performing minimization step: 2296. Total energy = 4032.7532 kcal/mol (4026.5732 without restraints) Performing minimization step: 2297. Total energy = 4030.9633 kcal/mol (4024.7835 without restraints) Performing minimization step: 2298. Total energy = 4029.1754 kcal/mol (4022.9960 without restraints) Performing minimization step: 2299. Total energy = 4027.3889 kcal/mol (4021.2098 without restraints) Performing minimization step: 2300. Total energy = 4025.6045 kcal/mol (4019.4258 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 4023.8217 kcal/mol (4017.6433 without restraints) Performing minimization step: 2302. Total energy = 4022.0404 kcal/mol (4015.8624 without restraints) Performing minimization step: 2303. Total energy = 4020.2612 kcal/mol (4014.0835 without restraints) Performing minimization step: 2304. Total energy = 4018.4838 kcal/mol (4012.3064 without restraints) Performing minimization step: 2305. Total energy = 4016.7075 kcal/mol (4010.5305 without restraints) Performing minimization step: 2306. Total energy = 4014.9331 kcal/mol (4008.7564 without restraints) Performing minimization step: 2307. Total energy = 4013.1606 kcal/mol (4006.9842 without restraints) Performing minimization step: 2308. Total energy = 4011.3895 kcal/mol (4005.2135 without restraints) Performing minimization step: 2309. Total energy = 4009.6203 kcal/mol (4003.4447 without restraints) Performing minimization step: 2310. Total energy = 4007.8532 kcal/mol (4001.6778 without restraints) Performing minimization step: 2311. Total energy = 4006.0877 kcal/mol (3999.9126 without restraints) Performing minimization step: 2312. Total energy = 4004.3236 kcal/mol (3998.1490 without restraints) Performing minimization step: 2313. Total energy = 4002.5615 kcal/mol (3996.3870 without restraints) Performing minimization step: 2314. Total energy = 4000.8009 kcal/mol (3994.6268 without restraints) Performing minimization step: 2315. Total energy = 3999.0420 kcal/mol (3992.8682 without restraints) Performing minimization step: 2316. Total energy = 3997.2846 kcal/mol (3991.1112 without restraints) Performing minimization step: 2317. Total energy = 3995.5289 kcal/mol (3989.3557 without restraints) Performing minimization step: 2318. Total energy = 3993.7751 kcal/mol (3987.6023 without restraints) Performing minimization step: 2319. Total energy = 3992.0232 kcal/mol (3985.8507 without restraints) Performing minimization step: 2320. Total energy = 3990.2726 kcal/mol (3984.1005 without restraints) Performing minimization step: 2321. Total energy = 3988.5238 kcal/mol (3982.3519 without restraints) Performing minimization step: 2322. Total energy = 3986.7765 kcal/mol (3980.6050 without restraints) Performing minimization step: 2323. Total energy = 3985.0313 kcal/mol (3978.8601 without restraints) Performing minimization step: 2324. Total energy = 3983.2874 kcal/mol (3977.1165 without restraints) Performing minimization step: 2325. Total energy = 3981.5452 kcal/mol (3975.3746 without restraints) Performing minimization step: 2326. Total energy = 3979.8048 kcal/mol (3973.6344 without restraints) Performing minimization step: 2327. Total energy = 3978.0661 kcal/mol (3971.8961 without restraints) Performing minimization step: 2328. Total energy = 3976.3289 kcal/mol (3970.1592 without restraints) Performing minimization step: 2329. Total energy = 3974.5934 kcal/mol (3968.4240 without restraints) Performing minimization step: 2330. Total energy = 3972.8596 kcal/mol (3966.6906 without restraints) Performing minimization step: 2331. Total energy = 3971.1277 kcal/mol (3964.9589 without restraints) Performing minimization step: 2332. Total energy = 3969.3972 kcal/mol (3963.2287 without restraints) Performing minimization step: 2333. Total energy = 3967.6684 kcal/mol (3961.5002 without restraints) Performing minimization step: 2334. Total energy = 3965.9412 kcal/mol (3959.7733 without restraints) Performing minimization step: 2335. Total energy = 3964.2158 kcal/mol (3958.0484 without restraints) Performing minimization step: 2336. Total energy = 3962.4919 kcal/mol (3956.3246 without restraints) Performing minimization step: 2337. Total energy = 3960.7695 kcal/mol (3954.6025 without restraints) Performing minimization step: 2338. Total energy = 3959.0490 kcal/mol (3952.8824 without restraints) Performing minimization step: 2339. Total energy = 3957.3302 kcal/mol (3951.1638 without restraints) Performing minimization step: 2340. Total energy = 3955.6130 kcal/mol (3949.4470 without restraints) Performing minimization step: 2341. Total energy = 3953.8974 kcal/mol (3947.7316 without restraints) Performing minimization step: 2342. Total energy = 3952.1835 kcal/mol (3946.0179 without restraints) Performing minimization step: 2343. Total energy = 3950.4713 kcal/mol (3944.3061 without restraints) Performing minimization step: 2344. Total energy = 3948.7605 kcal/mol (3942.5954 without restraints) Performing minimization step: 2345. Total energy = 3947.0514 kcal/mol (3940.8867 without restraints) Performing minimization step: 2346. Total energy = 3945.3439 kcal/mol (3939.1796 without restraints) Performing minimization step: 2347. Total energy = 3943.6383 kcal/mol (3937.4743 without restraints) Performing minimization step: 2348. Total energy = 3941.9341 kcal/mol (3935.7703 without restraints) Performing minimization step: 2349. Total energy = 3940.2317 kcal/mol (3934.0682 without restraints) Performing minimization step: 2350. Total energy = 3938.5307 kcal/mol (3932.3675 without restraints) Performing minimization step: 2351. Total energy = 3936.8313 kcal/mol (3930.6684 without restraints) Performing minimization step: 2352. Total energy = 3935.1339 kcal/mol (3928.9712 without restraints) Performing minimization step: 2353. Total energy = 3933.4380 kcal/mol (3927.2757 without restraints) Performing minimization step: 2354. Total energy = 3931.7439 kcal/mol (3925.5819 without restraints) Performing minimization step: 2355. Total energy = 3930.0509 kcal/mol (3923.8892 without restraints) Performing minimization step: 2356. Total energy = 3928.3596 kcal/mol (3922.1981 without restraints) Performing minimization step: 2357. Total energy = 3926.6700 kcal/mol (3920.5088 without restraints) Performing minimization step: 2358. Total energy = 3924.9822 kcal/mol (3918.8213 without restraints) Performing minimization step: 2359. Total energy = 3923.2958 kcal/mol (3917.1351 without restraints) Performing minimization step: 2360. Total energy = 3921.6114 kcal/mol (3915.4510 without restraints) Performing minimization step: 2361. Total energy = 3919.9282 kcal/mol (3913.7681 without restraints) Performing minimization step: 2362. Total energy = 3918.2469 kcal/mol (3912.0872 without restraints) Performing minimization step: 2363. Total energy = 3916.5671 kcal/mol (3910.4077 without restraints) Performing minimization step: 2364. Total energy = 3914.8900 kcal/mol (3908.7309 without restraints) Performing minimization step: 2365. Total energy = 3913.2134 kcal/mol (3907.0544 without restraints) Performing minimization step: 2366. Total energy = 3911.5381 kcal/mol (3905.3794 without restraints) Performing minimization step: 2367. Total energy = 3909.8646 kcal/mol (3903.7065 without restraints) Performing minimization step: 2368. Total energy = 3908.1929 kcal/mol (3902.0348 without restraints) Performing minimization step: 2369. Total energy = 3906.5227 kcal/mol (3900.3648 without restraints) Performing minimization step: 2370. Total energy = 3904.8543 kcal/mol (3898.6967 without restraints) Performing minimization step: 2371. Total energy = 3903.1876 kcal/mol (3897.0305 without restraints) Performing minimization step: 2372. Total energy = 3901.5223 kcal/mol (3895.3653 without restraints) Performing minimization step: 2373. Total energy = 3899.8584 kcal/mol (3893.7015 without restraints) Performing minimization step: 2374. Total energy = 3898.1959 kcal/mol (3892.0394 without restraints) Performing minimization step: 2375. Total energy = 3896.5348 kcal/mol (3890.3785 without restraints) Performing minimization step: 2376. Total energy = 3894.8758 kcal/mol (3888.7197 without restraints) Performing minimization step: 2377. Total energy = 3893.2182 kcal/mol (3887.0624 without restraints) Performing minimization step: 2378. Total energy = 3891.5623 kcal/mol (3885.4067 without restraints) Performing minimization step: 2379. Total energy = 3889.9080 kcal/mol (3883.7527 without restraints) Performing minimization step: 2380. Total energy = 3888.2553 kcal/mol (3882.1003 without restraints) Performing minimization step: 2381. Total energy = 3886.6035 kcal/mol (3880.4488 without restraints) Performing minimization step: 2382. Total energy = 3884.9537 kcal/mol (3878.7992 without restraints) Performing minimization step: 2383. Total energy = 3883.3060 kcal/mol (3877.1518 without restraints) Performing minimization step: 2384. Total energy = 3881.6592 kcal/mol (3875.5053 without restraints) Performing minimization step: 2385. Total energy = 3880.0144 kcal/mol (3873.8608 without restraints) Performing minimization step: 2386. Total energy = 3878.3705 kcal/mol (3872.2169 without restraints) Performing minimization step: 2387. Total energy = 3876.7281 kcal/mol (3870.5749 without restraints) Performing minimization step: 2388. Total energy = 3875.0880 kcal/mol (3868.9350 without restraints) Performing minimization step: 2389. Total energy = 3873.4491 kcal/mol (3867.2964 without restraints) Performing minimization step: 2390. Total energy = 3871.8118 kcal/mol (3865.6595 without restraints) Performing minimization step: 2391. Total energy = 3870.1762 kcal/mol (3864.0240 without restraints) Performing minimization step: 2392. Total energy = 3868.5417 kcal/mol (3862.3898 without restraints) Performing minimization step: 2393. Total energy = 3866.9090 kcal/mol (3860.7573 without restraints) Performing minimization step: 2394. Total energy = 3865.2781 kcal/mol (3859.1266 without restraints) Performing minimization step: 2395. Total energy = 3863.6487 kcal/mol (3857.4976 without restraints) Performing minimization step: 2396. Total energy = 3862.0208 kcal/mol (3855.8699 without restraints) Performing minimization step: 2397. Total energy = 3860.3943 kcal/mol (3854.2436 without restraints) Performing minimization step: 2398. Total energy = 3858.7692 kcal/mol (3852.6187 without restraints) Performing minimization step: 2399. Total energy = 3857.1459 kcal/mol (3850.9956 without restraints) Performing minimization step: 2400. Total energy = 3855.5239 kcal/mol (3849.3739 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 3853.9036 kcal/mol (3847.7539 without restraints) Performing minimization step: 2402. Total energy = 3852.2854 kcal/mol (3846.1359 without restraints) Performing minimization step: 2403. Total energy = 3850.6680 kcal/mol (3844.5186 without restraints) Performing minimization step: 2404. Total energy = 3849.0520 kcal/mol (3842.9030 without restraints) Performing minimization step: 2405. Total energy = 3847.4377 kcal/mol (3841.2889 without restraints) Performing minimization step: 2406. Total energy = 3845.8253 kcal/mol (3839.6767 without restraints) Performing minimization step: 2407. Total energy = 3844.2141 kcal/mol (3838.0657 without restraints) Performing minimization step: 2408. Total energy = 3842.6043 kcal/mol (3836.4562 without restraints) Performing minimization step: 2409. Total energy = 3840.9964 kcal/mol (3834.8486 without restraints) Performing minimization step: 2410. Total energy = 3839.3898 kcal/mol (3833.2422 without restraints) Performing minimization step: 2411. Total energy = 3837.7848 kcal/mol (3831.6374 without restraints) Performing minimization step: 2412. Total energy = 3836.1812 kcal/mol (3830.0340 without restraints) Performing minimization step: 2413. Total energy = 3834.5791 kcal/mol (3828.4321 without restraints) Performing minimization step: 2414. Total energy = 3832.9786 kcal/mol (3826.8318 without restraints) Performing minimization step: 2415. Total energy = 3831.3797 kcal/mol (3825.2333 without restraints) Performing minimization step: 2416. Total energy = 3829.7822 kcal/mol (3823.6359 without restraints) Performing minimization step: 2417. Total energy = 3828.1860 kcal/mol (3822.0400 without restraints) Performing minimization step: 2418. Total energy = 3826.5916 kcal/mol (3820.4458 without restraints) Performing minimization step: 2419. Total energy = 3824.9983 kcal/mol (3818.8527 without restraints) Performing minimization step: 2420. Total energy = 3823.4072 kcal/mol (3817.2618 without restraints) Performing minimization step: 2421. Total energy = 3821.8171 kcal/mol (3815.6720 without restraints) Performing minimization step: 2422. Total energy = 3820.2288 kcal/mol (3814.0839 without restraints) Performing minimization step: 2423. Total energy = 3818.6412 kcal/mol (3812.4963 without restraints) Performing minimization step: 2424. Total energy = 3817.0557 kcal/mol (3810.9113 without restraints) Performing minimization step: 2425. Total energy = 3815.4714 kcal/mol (3809.3272 without restraints) Performing minimization step: 2426. Total energy = 3813.8888 kcal/mol (3807.7448 without restraints) Performing minimization step: 2427. Total energy = 3812.3080 kcal/mol (3806.1643 without restraints) Performing minimization step: 2428. Total energy = 3810.7284 kcal/mol (3804.5849 without restraints) Performing minimization step: 2429. Total energy = 3809.1503 kcal/mol (3803.0069 without restraints) Performing minimization step: 2430. Total energy = 3807.5743 kcal/mol (3801.4312 without restraints) Performing minimization step: 2431. Total energy = 3805.9994 kcal/mol (3799.8564 without restraints) Performing minimization step: 2432. Total energy = 3804.4264 kcal/mol (3798.2837 without restraints) Performing minimization step: 2433. Total energy = 3802.8543 kcal/mol (3796.7119 without restraints) Performing minimization step: 2434. Total energy = 3801.2839 kcal/mol (3795.1416 without restraints) Performing minimization step: 2435. Total energy = 3799.7146 kcal/mol (3793.5725 without restraints) Performing minimization step: 2436. Total energy = 3798.1468 kcal/mol (3792.0050 without restraints) Performing minimization step: 2437. Total energy = 3796.5807 kcal/mol (3790.4391 without restraints) Performing minimization step: 2438. Total energy = 3795.0159 kcal/mol (3788.8744 without restraints) Performing minimization step: 2439. Total energy = 3793.4525 kcal/mol (3787.3113 without restraints) Performing minimization step: 2440. Total energy = 3791.8906 kcal/mol (3785.7496 without restraints) Performing minimization step: 2441. Total energy = 3790.3304 kcal/mol (3784.1895 without restraints) Performing minimization step: 2442. Total energy = 3788.7715 kcal/mol (3782.6308 without restraints) Performing minimization step: 2443. Total energy = 3787.2139 kcal/mol (3781.0735 without restraints) Performing minimization step: 2444. Total energy = 3785.6580 kcal/mol (3779.5178 without restraints) Performing minimization step: 2445. Total energy = 3784.1037 kcal/mol (3777.9637 without restraints) Performing minimization step: 2446. Total energy = 3782.5497 kcal/mol (3776.4100 without restraints) Performing minimization step: 2447. Total energy = 3780.9986 kcal/mol (3774.8590 without restraints) Performing minimization step: 2448. Total energy = 3779.4484 kcal/mol (3773.3090 without restraints) Performing minimization step: 2449. Total energy = 3777.8996 kcal/mol (3771.7605 without restraints) Performing minimization step: 2450. Total energy = 3776.3524 kcal/mol (3770.2134 without restraints) Performing minimization step: 2451. Total energy = 3774.8065 kcal/mol (3768.6676 without restraints) Performing minimization step: 2452. Total energy = 3773.2620 kcal/mol (3767.1234 without restraints) Performing minimization step: 2453. Total energy = 3771.7191 kcal/mol (3765.5807 without restraints) Performing minimization step: 2454. Total energy = 3770.1778 kcal/mol (3764.0396 without restraints) Performing minimization step: 2455. Total energy = 3768.6378 kcal/mol (3762.4998 without restraints) Performing minimization step: 2456. Total energy = 3767.0998 kcal/mol (3760.9621 without restraints) Performing minimization step: 2457. Total energy = 3765.5626 kcal/mol (3759.4250 without restraints) Performing minimization step: 2458. Total energy = 3764.0270 kcal/mol (3757.8897 without restraints) Performing minimization step: 2459. Total energy = 3762.4931 kcal/mol (3756.3560 without restraints) Performing minimization step: 2460. Total energy = 3760.9609 kcal/mol (3754.8240 without restraints) Performing minimization step: 2461. Total energy = 3759.4297 kcal/mol (3753.2928 without restraints) Performing minimization step: 2462. Total energy = 3757.8998 kcal/mol (3751.7632 without restraints) Performing minimization step: 2463. Total energy = 3756.3714 kcal/mol (3750.2351 without restraints) Performing minimization step: 2464. Total energy = 3754.8446 kcal/mol (3748.7085 without restraints) Performing minimization step: 2465. Total energy = 3753.3191 kcal/mol (3747.1831 without restraints) Performing minimization step: 2466. Total energy = 3751.7950 kcal/mol (3745.6591 without restraints) Performing minimization step: 2467. Total energy = 3750.2722 kcal/mol (3744.1365 without restraints) Performing minimization step: 2468. Total energy = 3748.7508 kcal/mol (3742.6154 without restraints) Performing minimization step: 2469. Total energy = 3747.2311 kcal/mol (3741.0960 without restraints) Performing minimization step: 2470. Total energy = 3745.7129 kcal/mol (3739.5778 without restraints) Performing minimization step: 2471. Total energy = 3744.1953 kcal/mol (3738.0603 without restraints) Performing minimization step: 2472. Total energy = 3742.6796 kcal/mol (3736.5449 without restraints) Performing minimization step: 2473. Total energy = 3741.1652 kcal/mol (3735.0307 without restraints) Performing minimization step: 2474. Total energy = 3739.6524 kcal/mol (3733.5180 without restraints) Performing minimization step: 2475. Total energy = 3738.1415 kcal/mol (3732.0073 without restraints) Performing minimization step: 2476. Total energy = 3736.6315 kcal/mol (3730.4975 without restraints) Performing minimization step: 2477. Total energy = 3735.1232 kcal/mol (3728.9893 without restraints) Performing minimization step: 2478. Total energy = 3733.6162 kcal/mol (3727.4826 without restraints) Performing minimization step: 2479. Total energy = 3732.1104 kcal/mol (3725.9770 without restraints) Performing minimization step: 2480. Total energy = 3730.6064 kcal/mol (3724.4730 without restraints) Performing minimization step: 2481. Total energy = 3729.1040 kcal/mol (3722.9709 without restraints) Performing minimization step: 2482. Total energy = 3727.6024 kcal/mol (3721.4694 without restraints) Performing minimization step: 2483. Total energy = 3726.1025 kcal/mol (3719.9697 without restraints) Performing minimization step: 2484. Total energy = 3724.6038 kcal/mol (3718.4712 without restraints) Performing minimization step: 2485. Total energy = 3723.1064 kcal/mol (3716.9740 without restraints) Performing minimization step: 2486. Total energy = 3721.6113 kcal/mol (3715.4792 without restraints) Performing minimization step: 2487. Total energy = 3720.1169 kcal/mol (3713.9848 without restraints) Performing minimization step: 2488. Total energy = 3718.6239 kcal/mol (3712.4919 without restraints) Performing minimization step: 2489. Total energy = 3717.1324 kcal/mol (3711.0007 without restraints) Performing minimization step: 2490. Total energy = 3715.6419 kcal/mol (3709.5102 without restraints) Performing minimization step: 2491. Total energy = 3714.1529 kcal/mol (3708.0215 without restraints) Performing minimization step: 2492. Total energy = 3712.6656 kcal/mol (3706.5345 without restraints) Performing minimization step: 2493. Total energy = 3711.1795 kcal/mol (3705.0485 without restraints) Performing minimization step: 2494. Total energy = 3709.6952 kcal/mol (3703.5645 without restraints) Performing minimization step: 2495. Total energy = 3708.2119 kcal/mol (3702.0812 without restraints) Performing minimization step: 2496. Total energy = 3706.7300 kcal/mol (3700.5994 without restraints) Performing minimization step: 2497. Total energy = 3705.2495 kcal/mol (3699.1191 without restraints) Performing minimization step: 2498. Total energy = 3703.7704 kcal/mol (3697.6402 without restraints) Performing minimization step: 2499. Total energy = 3702.2931 kcal/mol (3696.1630 without restraints) Performing minimization step: 2500. Total energy = 3700.8166 kcal/mol (3694.6866 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 3699.3416 kcal/mol (3693.2118 without restraints) Performing minimization step: 2502. Total energy = 3697.8682 kcal/mol (3691.7388 without restraints) Performing minimization step: 2503. Total energy = 3696.3961 kcal/mol (3690.2667 without restraints) Performing minimization step: 2504. Total energy = 3694.9253 kcal/mol (3688.7961 without restraints) Performing minimization step: 2505. Total energy = 3693.4562 kcal/mol (3687.3270 without restraints) Performing minimization step: 2506. Total energy = 3691.9884 kcal/mol (3685.8594 without restraints) Performing minimization step: 2507. Total energy = 3690.5217 kcal/mol (3684.3929 without restraints) Performing minimization step: 2508. Total energy = 3689.0562 kcal/mol (3682.9275 without restraints) Performing minimization step: 2509. Total energy = 3687.5926 kcal/mol (3681.4642 without restraints) Performing minimization step: 2510. Total energy = 3686.1300 kcal/mol (3680.0017 without restraints) Performing minimization step: 2511. Total energy = 3684.6690 kcal/mol (3678.5408 without restraints) Performing minimization step: 2512. Total energy = 3683.2092 kcal/mol (3677.0811 without restraints) Performing minimization step: 2513. Total energy = 3681.7508 kcal/mol (3675.6229 without restraints) Performing minimization step: 2514. Total energy = 3680.2941 kcal/mol (3674.1663 without restraints) Performing minimization step: 2515. Total energy = 3678.8383 kcal/mol (3672.7108 without restraints) Performing minimization step: 2516. Total energy = 3677.3841 kcal/mol (3671.2567 without restraints) Performing minimization step: 2517. Total energy = 3675.9318 kcal/mol (3669.8047 without restraints) Performing minimization step: 2518. Total energy = 3674.4801 kcal/mol (3668.3530 without restraints) Performing minimization step: 2519. Total energy = 3673.0298 kcal/mol (3666.9028 without restraints) Performing minimization step: 2520. Total energy = 3671.5814 kcal/mol (3665.4547 without restraints) Performing minimization step: 2521. Total energy = 3670.1339 kcal/mol (3664.0072 without restraints) Performing minimization step: 2522. Total energy = 3668.6877 kcal/mol (3662.5611 without restraints) Performing minimization step: 2523. Total energy = 3667.2428 kcal/mol (3661.1164 without restraints) Performing minimization step: 2524. Total energy = 3665.7994 kcal/mol (3659.6731 without restraints) Performing minimization step: 2525. Total energy = 3664.3576 kcal/mol (3658.2314 without restraints) Performing minimization step: 2526. Total energy = 3662.9169 kcal/mol (3656.7909 without restraints) Performing minimization step: 2527. Total energy = 3661.4774 kcal/mol (3655.3516 without restraints) Performing minimization step: 2528. Total energy = 3660.0392 kcal/mol (3653.9135 without restraints) Performing minimization step: 2529. Total energy = 3658.6025 kcal/mol (3652.4770 without restraints) Performing minimization step: 2530. Total energy = 3657.1674 kcal/mol (3651.0420 without restraints) Performing minimization step: 2531. Total energy = 3655.7333 kcal/mol (3649.6081 without restraints) Performing minimization step: 2532. Total energy = 3654.3008 kcal/mol (3648.1756 without restraints) Performing minimization step: 2533. Total energy = 3652.8695 kcal/mol (3646.7445 without restraints) Performing minimization step: 2534. Total energy = 3651.4395 kcal/mol (3645.3148 without restraints) Performing minimization step: 2535. Total energy = 3650.0107 kcal/mol (3643.8859 without restraints) Performing minimization step: 2536. Total energy = 3648.5835 kcal/mol (3642.4589 without restraints) Performing minimization step: 2537. Total energy = 3647.1573 kcal/mol (3641.0329 without restraints) Performing minimization step: 2538. Total energy = 3645.7328 kcal/mol (3639.6085 without restraints) Performing minimization step: 2539. Total energy = 3644.3093 kcal/mol (3638.1852 without restraints) Performing minimization step: 2540. Total energy = 3642.8872 kcal/mol (3636.7632 without restraints) Performing minimization step: 2541. Total energy = 3641.4665 kcal/mol (3635.3425 without restraints) Performing minimization step: 2542. Total energy = 3640.0480 kcal/mol (3633.9243 without restraints) Performing minimization step: 2543. Total energy = 3638.6303 kcal/mol (3632.5067 without restraints) Performing minimization step: 2544. Total energy = 3637.2135 kcal/mol (3631.0900 without restraints) Performing minimization step: 2545. Total energy = 3635.7981 kcal/mol (3629.6747 without restraints) Performing minimization step: 2546. Total energy = 3634.3842 kcal/mol (3628.2610 without restraints) Performing minimization step: 2547. Total energy = 3632.9713 kcal/mol (3626.8481 without restraints) Performing minimization step: 2548. Total energy = 3631.5599 kcal/mol (3625.4369 without restraints) Performing minimization step: 2549. Total energy = 3630.1498 kcal/mol (3624.0269 without restraints) Performing minimization step: 2550. Total energy = 3628.7411 kcal/mol (3622.6184 without restraints) Performing minimization step: 2551. Total energy = 3627.3334 kcal/mol (3621.2108 without restraints) Performing minimization step: 2552. Total energy = 3625.9269 kcal/mol (3619.8044 without restraints) Performing minimization step: 2553. Total energy = 3624.5221 kcal/mol (3618.3997 without restraints) Performing minimization step: 2554. Total energy = 3623.1187 kcal/mol (3616.9964 without restraints) Performing minimization step: 2555. Total energy = 3621.7165 kcal/mol (3615.5943 without restraints) Performing minimization step: 2556. Total energy = 3620.3155 kcal/mol (3614.1935 without restraints) Performing minimization step: 2557. Total energy = 3618.9161 kcal/mol (3612.7942 without restraints) Performing minimization step: 2558. Total energy = 3617.5178 kcal/mol (3611.3961 without restraints) Performing minimization step: 2559. Total energy = 3616.1209 kcal/mol (3609.9993 without restraints) Performing minimization step: 2560. Total energy = 3614.7254 kcal/mol (3608.6039 without restraints) Performing minimization step: 2561. Total energy = 3613.3311 kcal/mol (3607.2097 without restraints) Performing minimization step: 2562. Total energy = 3611.9380 kcal/mol (3605.8167 without restraints) Performing minimization step: 2563. Total energy = 3610.5462 kcal/mol (3604.4251 without restraints) Performing minimization step: 2564. Total energy = 3609.1558 kcal/mol (3603.0347 without restraints) Performing minimization step: 2565. Total energy = 3607.7670 kcal/mol (3601.6461 without restraints) Performing minimization step: 2566. Total energy = 3606.3791 kcal/mol (3600.2584 without restraints) Performing minimization step: 2567. Total energy = 3604.9926 kcal/mol (3598.8719 without restraints) Performing minimization step: 2568. Total energy = 3603.6076 kcal/mol (3597.4870 without restraints) Performing minimization step: 2569. Total energy = 3602.2238 kcal/mol (3596.1033 without restraints) Performing minimization step: 2570. Total energy = 3600.8413 kcal/mol (3594.7209 without restraints) Performing minimization step: 2571. Total energy = 3599.4599 kcal/mol (3593.3396 without restraints) Performing minimization step: 2572. Total energy = 3598.0799 kcal/mol (3591.9598 without restraints) Performing minimization step: 2573. Total energy = 3596.7011 kcal/mol (3590.5811 without restraints) Performing minimization step: 2574. Total energy = 3595.3236 kcal/mol (3589.2036 without restraints) Performing minimization step: 2575. Total energy = 3593.9473 kcal/mol (3587.8275 without restraints) Performing minimization step: 2576. Total energy = 3592.5724 kcal/mol (3586.4527 without restraints) Performing minimization step: 2577. Total energy = 3591.1989 kcal/mol (3585.0793 without restraints) Performing minimization step: 2578. Total energy = 3589.8275 kcal/mol (3583.7081 without restraints) Performing minimization step: 2579. Total energy = 3588.4570 kcal/mol (3582.3377 without restraints) Performing minimization step: 2580. Total energy = 3587.0873 kcal/mol (3580.9680 without restraints) Performing minimization step: 2581. Total energy = 3585.7187 kcal/mol (3579.5996 without restraints) Performing minimization step: 2582. Total energy = 3584.3514 kcal/mol (3578.2323 without restraints) Performing minimization step: 2583. Total energy = 3582.9854 kcal/mol (3576.8664 without restraints) Performing minimization step: 2584. Total energy = 3581.6208 kcal/mol (3575.5019 without restraints) Performing minimization step: 2585. Total energy = 3580.2574 kcal/mol (3574.1386 without restraints) Performing minimization step: 2586. Total energy = 3578.8953 kcal/mol (3572.7766 without restraints) Performing minimization step: 2587. Total energy = 3577.5344 kcal/mol (3571.4159 without restraints) Performing minimization step: 2588. Total energy = 3576.1749 kcal/mol (3570.0564 without restraints) Performing minimization step: 2589. Total energy = 3574.8167 kcal/mol (3568.6983 without restraints) Performing minimization step: 2590. Total energy = 3573.4595 kcal/mol (3567.3413 without restraints) Performing minimization step: 2591. Total energy = 3572.1042 kcal/mol (3565.9860 without restraints) Performing minimization step: 2592. Total energy = 3570.7497 kcal/mol (3564.6316 without restraints) Performing minimization step: 2593. Total energy = 3569.3965 kcal/mol (3563.2786 without restraints) Performing minimization step: 2594. Total energy = 3568.0442 kcal/mol (3561.9263 without restraints) Performing minimization step: 2595. Total energy = 3566.6935 kcal/mol (3560.5758 without restraints) Performing minimization step: 2596. Total energy = 3565.3439 kcal/mol (3559.2262 without restraints) Performing minimization step: 2597. Total energy = 3563.9959 kcal/mol (3557.8785 without restraints) Performing minimization step: 2598. Total energy = 3562.6494 kcal/mol (3556.5320 without restraints) Performing minimization step: 2599. Total energy = 3561.3038 kcal/mol (3555.1863 without restraints) Performing minimization step: 2600. Total energy = 3559.9594 kcal/mol (3553.8421 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 3558.6163 kcal/mol (3552.4991 without restraints) Performing minimization step: 2602. Total energy = 3557.2746 kcal/mol (3551.1575 without restraints) Performing minimization step: 2603. Total energy = 3555.9340 kcal/mol (3549.8170 without restraints) Performing minimization step: 2604. Total energy = 3554.5946 kcal/mol (3548.4777 without restraints) Performing minimization step: 2605. Total energy = 3553.2566 kcal/mol (3547.1398 without restraints) Performing minimization step: 2606. Total energy = 3551.9198 kcal/mol (3545.8031 without restraints) Performing minimization step: 2607. Total energy = 3550.5845 kcal/mol (3544.4679 without restraints) Performing minimization step: 2608. Total energy = 3549.2506 kcal/mol (3543.1343 without restraints) Performing minimization step: 2609. Total energy = 3547.9179 kcal/mol (3541.8015 without restraints) Performing minimization step: 2610. Total energy = 3546.5861 kcal/mol (3540.4698 without restraints) Performing minimization step: 2611. Total energy = 3545.2556 kcal/mol (3539.1393 without restraints) Performing minimization step: 2612. Total energy = 3543.9264 kcal/mol (3537.8102 without restraints) Performing minimization step: 2613. Total energy = 3542.5988 kcal/mol (3536.4827 without restraints) Performing minimization step: 2614. Total energy = 3541.2720 kcal/mol (3535.1559 without restraints) Performing minimization step: 2615. Total energy = 3539.9466 kcal/mol (3533.8306 without restraints) Performing minimization step: 2616. Total energy = 3538.6222 kcal/mol (3532.5064 without restraints) Performing minimization step: 2617. Total energy = 3537.2992 kcal/mol (3531.1834 without restraints) Performing minimization step: 2618. Total energy = 3535.9780 kcal/mol (3529.8622 without restraints) Performing minimization step: 2619. Total energy = 3534.6575 kcal/mol (3528.5419 without restraints) Performing minimization step: 2620. Total energy = 3533.3382 kcal/mol (3527.2226 without restraints) Performing minimization step: 2621. Total energy = 3532.0199 kcal/mol (3525.9045 without restraints) Performing minimization step: 2622. Total energy = 3530.7030 kcal/mol (3524.5876 without restraints) Performing minimization step: 2623. Total energy = 3529.3873 kcal/mol (3523.2720 without restraints) Performing minimization step: 2624. Total energy = 3528.0738 kcal/mol (3521.9586 without restraints) Performing minimization step: 2625. Total energy = 3526.7610 kcal/mol (3520.6459 without restraints) Performing minimization step: 2626. Total energy = 3525.4493 kcal/mol (3519.3342 without restraints) Performing minimization step: 2627. Total energy = 3524.1386 kcal/mol (3518.0236 without restraints) Performing minimization step: 2628. Total energy = 3522.8290 kcal/mol (3516.7142 without restraints) Performing minimization step: 2629. Total energy = 3521.5207 kcal/mol (3515.4059 without restraints) Performing minimization step: 2630. Total energy = 3520.2141 kcal/mol (3514.0995 without restraints) Performing minimization step: 2631. Total energy = 3518.9086 kcal/mol (3512.7940 without restraints) Performing minimization step: 2632. Total energy = 3517.6045 kcal/mol (3511.4899 without restraints) Performing minimization step: 2633. Total energy = 3516.3012 kcal/mol (3510.1866 without restraints) Performing minimization step: 2634. Total energy = 3514.9990 kcal/mol (3508.8846 without restraints) Performing minimization step: 2635. Total energy = 3513.6977 kcal/mol (3507.5833 without restraints) Performing minimization step: 2636. Total energy = 3512.3980 kcal/mol (3506.2837 without restraints) Performing minimization step: 2637. Total energy = 3511.0996 kcal/mol (3504.9853 without restraints) Performing minimization step: 2638. Total energy = 3509.8025 kcal/mol (3503.6883 without restraints) Performing minimization step: 2639. Total energy = 3508.5063 kcal/mol (3502.3922 without restraints) Performing minimization step: 2640. Total energy = 3507.2117 kcal/mol (3501.0976 without restraints) Performing minimization step: 2641. Total energy = 3505.9183 kcal/mol (3499.8043 without restraints) Performing minimization step: 2642. Total energy = 3504.6260 kcal/mol (3498.5120 without restraints) Performing minimization step: 2643. Total energy = 3503.3348 kcal/mol (3497.2209 without restraints) Performing minimization step: 2644. Total energy = 3502.0453 kcal/mol (3495.9315 without restraints) Performing minimization step: 2645. Total energy = 3500.7565 kcal/mol (3494.6428 without restraints) Performing minimization step: 2646. Total energy = 3499.4696 kcal/mol (3493.3560 without restraints) Performing minimization step: 2647. Total energy = 3498.1832 kcal/mol (3492.0697 without restraints) Performing minimization step: 2648. Total energy = 3496.8981 kcal/mol (3490.7846 without restraints) Performing minimization step: 2649. Total energy = 3495.6142 kcal/mol (3489.5007 without restraints) Performing minimization step: 2650. Total energy = 3494.3319 kcal/mol (3488.2185 without restraints) Performing minimization step: 2651. Total energy = 3493.0501 kcal/mol (3486.9368 without restraints) Performing minimization step: 2652. Total energy = 3491.7697 kcal/mol (3485.6564 without restraints) Performing minimization step: 2653. Total energy = 3490.4908 kcal/mol (3484.3776 without restraints) Performing minimization step: 2654. Total energy = 3489.2129 kcal/mol (3483.0997 without restraints) Performing minimization step: 2655. Total energy = 3487.9364 kcal/mol (3481.8233 without restraints) Performing minimization step: 2656. Total energy = 3486.6616 kcal/mol (3480.5485 without restraints) Performing minimization step: 2657. Total energy = 3485.3875 kcal/mol (3479.2745 without restraints) Performing minimization step: 2658. Total energy = 3484.1144 kcal/mol (3478.0015 without restraints) Performing minimization step: 2659. Total energy = 3482.8425 kcal/mol (3476.7296 without restraints) Performing minimization step: 2660. Total energy = 3481.5718 kcal/mol (3475.4589 without restraints) Performing minimization step: 2661. Total energy = 3480.3026 kcal/mol (3474.1898 without restraints) Performing minimization step: 2662. Total energy = 3479.0342 kcal/mol (3472.9215 without restraints) Performing minimization step: 2663. Total energy = 3477.7672 kcal/mol (3471.6545 without restraints) Performing minimization step: 2664. Total energy = 3476.5014 kcal/mol (3470.3889 without restraints) Performing minimization step: 2665. Total energy = 3475.2367 kcal/mol (3469.1241 without restraints) Performing minimization step: 2666. Total energy = 3473.9732 kcal/mol (3467.8607 without restraints) Performing minimization step: 2667. Total energy = 3472.7110 kcal/mol (3466.5985 without restraints) Performing minimization step: 2668. Total energy = 3471.4498 kcal/mol (3465.3375 without restraints) Performing minimization step: 2669. Total energy = 3470.1898 kcal/mol (3464.0773 without restraints) Performing minimization step: 2670. Total energy = 3468.9314 kcal/mol (3462.8191 without restraints) Performing minimization step: 2671. Total energy = 3467.6740 kcal/mol (3461.5617 without restraints) Performing minimization step: 2672. Total energy = 3466.4177 kcal/mol (3460.3055 without restraints) Performing minimization step: 2673. Total energy = 3465.1625 kcal/mol (3459.0505 without restraints) Performing minimization step: 2674. Total energy = 3463.9086 kcal/mol (3457.7965 without restraints) Performing minimization step: 2675. Total energy = 3462.6559 kcal/mol (3456.5439 without restraints) Performing minimization step: 2676. Total energy = 3461.4038 kcal/mol (3455.2918 without restraints) Performing minimization step: 2677. Total energy = 3460.1535 kcal/mol (3454.0416 without restraints) Performing minimization step: 2678. Total energy = 3458.9044 kcal/mol (3452.7925 without restraints) Performing minimization step: 2679. Total energy = 3457.6562 kcal/mol (3451.5443 without restraints) Performing minimization step: 2680. Total energy = 3456.4096 kcal/mol (3450.2978 without restraints) Performing minimization step: 2681. Total energy = 3455.1638 kcal/mol (3449.0520 without restraints) Performing minimization step: 2682. Total energy = 3453.9195 kcal/mol (3447.8077 without restraints) Performing minimization step: 2683. Total energy = 3452.6759 kcal/mol (3446.5642 without restraints) Performing minimization step: 2684. Total energy = 3451.4338 kcal/mol (3445.3221 without restraints) Performing minimization step: 2685. Total energy = 3450.1932 kcal/mol (3444.0816 without restraints) Performing minimization step: 2686. Total energy = 3448.9534 kcal/mol (3442.8418 without restraints) Performing minimization step: 2687. Total energy = 3447.7142 kcal/mol (3441.6028 without restraints) Performing minimization step: 2688. Total energy = 3446.4771 kcal/mol (3440.3656 without restraints) Performing minimization step: 2689. Total energy = 3445.2408 kcal/mol (3439.1294 without restraints) Performing minimization step: 2690. Total energy = 3444.0054 kcal/mol (3437.8941 without restraints) Performing minimization step: 2691. Total energy = 3442.7714 kcal/mol (3436.6600 without restraints) Performing minimization step: 2692. Total energy = 3441.5384 kcal/mol (3435.4271 without restraints) Performing minimization step: 2693. Total energy = 3440.3067 kcal/mol (3434.1954 without restraints) Performing minimization step: 2694. Total energy = 3439.0762 kcal/mol (3432.9649 without restraints) Performing minimization step: 2695. Total energy = 3437.8462 kcal/mol (3431.7350 without restraints) Performing minimization step: 2696. Total energy = 3436.6179 kcal/mol (3430.5068 without restraints) Performing minimization step: 2697. Total energy = 3435.3905 kcal/mol (3429.2793 without restraints) Performing minimization step: 2698. Total energy = 3434.1644 kcal/mol (3428.0533 without restraints) Performing minimization step: 2699. Total energy = 3432.9397 kcal/mol (3426.8287 without restraints) Performing minimization step: 2700. Total energy = 3431.7165 kcal/mol (3425.6055 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 3430.4939 kcal/mol (3424.3829 without restraints) Performing minimization step: 2702. Total energy = 3429.2727 kcal/mol (3423.1617 without restraints) Performing minimization step: 2703. Total energy = 3428.0526 kcal/mol (3421.9416 without restraints) Performing minimization step: 2704. Total energy = 3426.8334 kcal/mol (3420.7226 without restraints) Performing minimization step: 2705. Total energy = 3425.6154 kcal/mol (3419.5046 without restraints) Performing minimization step: 2706. Total energy = 3424.3981 kcal/mol (3418.2873 without restraints) Performing minimization step: 2707. Total energy = 3423.1824 kcal/mol (3417.0716 without restraints) Performing minimization step: 2708. Total energy = 3421.9676 kcal/mol (3415.8568 without restraints) Performing minimization step: 2709. Total energy = 3420.7544 kcal/mol (3414.6436 without restraints) Performing minimization step: 2710. Total energy = 3419.5422 kcal/mol (3413.4314 without restraints) Performing minimization step: 2711. Total energy = 3418.3316 kcal/mol (3412.2209 without restraints) Performing minimization step: 2712. Total energy = 3417.1216 kcal/mol (3411.0110 without restraints) Performing minimization step: 2713. Total energy = 3415.9127 kcal/mol (3409.8021 without restraints) Performing minimization step: 2714. Total energy = 3414.7051 kcal/mol (3408.5947 without restraints) Performing minimization step: 2715. Total energy = 3413.4988 kcal/mol (3407.3883 without restraints) Performing minimization step: 2716. Total energy = 3412.2941 kcal/mol (3406.1835 without restraints) Performing minimization step: 2717. Total energy = 3411.0899 kcal/mol (3404.9794 without restraints) Performing minimization step: 2718. Total energy = 3409.8868 kcal/mol (3403.7763 without restraints) Performing minimization step: 2719. Total energy = 3408.6845 kcal/mol (3402.5740 without restraints) Performing minimization step: 2720. Total energy = 3407.4838 kcal/mol (3401.3734 without restraints) Performing minimization step: 2721. Total energy = 3406.2841 kcal/mol (3400.1738 without restraints) Performing minimization step: 2722. Total energy = 3405.0856 kcal/mol (3398.9752 without restraints) Performing minimization step: 2723. Total energy = 3403.8881 kcal/mol (3397.7777 without restraints) Performing minimization step: 2724. Total energy = 3402.6917 kcal/mol (3396.5813 without restraints) Performing minimization step: 2725. Total energy = 3401.4964 kcal/mol (3395.3860 without restraints) Performing minimization step: 2726. Total energy = 3400.3024 kcal/mol (3394.1920 without restraints) Performing minimization step: 2727. Total energy = 3399.1096 kcal/mol (3392.9992 without restraints) Performing minimization step: 2728. Total energy = 3397.9179 kcal/mol (3391.8076 without restraints) Performing minimization step: 2729. Total energy = 3396.7270 kcal/mol (3390.6166 without restraints) Performing minimization step: 2730. Total energy = 3395.5374 kcal/mol (3389.4272 without restraints) Performing minimization step: 2731. Total energy = 3394.3491 kcal/mol (3388.2388 without restraints) Performing minimization step: 2732. Total energy = 3393.1614 kcal/mol (3387.0511 without restraints) Performing minimization step: 2733. Total energy = 3391.9754 kcal/mol (3385.8653 without restraints) Performing minimization step: 2734. Total energy = 3390.7905 kcal/mol (3384.6803 without restraints) Performing minimization step: 2735. Total energy = 3389.6066 kcal/mol (3383.4964 without restraints) Performing minimization step: 2736. Total energy = 3388.4238 kcal/mol (3382.3136 without restraints) Performing minimization step: 2737. Total energy = 3387.2419 kcal/mol (3381.1318 without restraints) Performing minimization step: 2738. Total energy = 3386.0612 kcal/mol (3379.9510 without restraints) Performing minimization step: 2739. Total energy = 3384.8822 kcal/mol (3378.7721 without restraints) Performing minimization step: 2740. Total energy = 3383.7037 kcal/mol (3377.5936 without restraints) Performing minimization step: 2741. Total energy = 3382.5264 kcal/mol (3376.4163 without restraints) Performing minimization step: 2742. Total energy = 3381.3500 kcal/mol (3375.2399 without restraints) Performing minimization step: 2743. Total energy = 3380.1753 kcal/mol (3374.0654 without restraints) Performing minimization step: 2744. Total energy = 3379.0014 kcal/mol (3372.8914 without restraints) Performing minimization step: 2745. Total energy = 3377.8289 kcal/mol (3371.7188 without restraints) Performing minimization step: 2746. Total energy = 3376.6573 kcal/mol (3370.5473 without restraints) Performing minimization step: 2747. Total energy = 3375.4867 kcal/mol (3369.3766 without restraints) Performing minimization step: 2748. Total energy = 3374.3166 kcal/mol (3368.2065 without restraints) Performing minimization step: 2749. Total energy = 3373.1480 kcal/mol (3367.0380 without restraints) Performing minimization step: 2750. Total energy = 3371.9807 kcal/mol (3365.8707 without restraints) Performing minimization step: 2751. Total energy = 3370.8142 kcal/mol (3364.7041 without restraints) Performing minimization step: 2752. Total energy = 3369.6491 kcal/mol (3363.5391 without restraints) Performing minimization step: 2753. Total energy = 3368.4850 kcal/mol (3362.3749 without restraints) Performing minimization step: 2754. Total energy = 3367.3216 kcal/mol (3361.2117 without restraints) Performing minimization step: 2755. Total energy = 3366.1595 kcal/mol (3360.0495 without restraints) Performing minimization step: 2756. Total energy = 3364.9987 kcal/mol (3358.8886 without restraints) Performing minimization step: 2757. Total energy = 3363.8391 kcal/mol (3357.7291 without restraints) Performing minimization step: 2758. Total energy = 3362.6805 kcal/mol (3356.5705 without restraints) Performing minimization step: 2759. Total energy = 3361.5230 kcal/mol (3355.4130 without restraints) Performing minimization step: 2760. Total energy = 3360.3666 kcal/mol (3354.2567 without restraints) Performing minimization step: 2761. Total energy = 3359.2111 kcal/mol (3353.1013 without restraints) Performing minimization step: 2762. Total energy = 3358.0576 kcal/mol (3351.9476 without restraints) Performing minimization step: 2763. Total energy = 3356.9044 kcal/mol (3350.7944 without restraints) Performing minimization step: 2764. Total energy = 3355.7522 kcal/mol (3349.6422 without restraints) Performing minimization step: 2765. Total energy = 3354.6013 kcal/mol (3348.4915 without restraints) Performing minimization step: 2766. Total energy = 3353.4515 kcal/mol (3347.3415 without restraints) Performing minimization step: 2767. Total energy = 3352.3030 kcal/mol (3346.1930 without restraints) Performing minimization step: 2768. Total energy = 3351.1554 kcal/mol (3345.0454 without restraints) Performing minimization step: 2769. Total energy = 3350.0088 kcal/mol (3343.8988 without restraints) Performing minimization step: 2770. Total energy = 3348.8632 kcal/mol (3342.7532 without restraints) Performing minimization step: 2771. Total energy = 3347.7187 kcal/mol (3341.6088 without restraints) Performing minimization step: 2772. Total energy = 3346.5753 kcal/mol (3340.4653 without restraints) Performing minimization step: 2773. Total energy = 3345.4329 kcal/mol (3339.3229 without restraints) Performing minimization step: 2774. Total energy = 3344.2915 kcal/mol (3338.1814 without restraints) Performing minimization step: 2775. Total energy = 3343.1515 kcal/mol (3337.0415 without restraints) Performing minimization step: 2776. Total energy = 3342.0121 kcal/mol (3335.9020 without restraints) Performing minimization step: 2777. Total energy = 3340.8740 kcal/mol (3334.7640 without restraints) Performing minimization step: 2778. Total energy = 3339.7370 kcal/mol (3333.6270 without restraints) Performing minimization step: 2779. Total energy = 3338.6011 kcal/mol (3332.4910 without restraints) Performing minimization step: 2780. Total energy = 3337.4662 kcal/mol (3331.3563 without restraints) Performing minimization step: 2781. Total energy = 3336.3325 kcal/mol (3330.2224 without restraints) Performing minimization step: 2782. Total energy = 3335.2003 kcal/mol (3329.0902 without restraints) Performing minimization step: 2783. Total energy = 3334.0684 kcal/mol (3327.9583 without restraints) Performing minimization step: 2784. Total energy = 3332.9380 kcal/mol (3326.8280 without restraints) Performing minimization step: 2785. Total energy = 3331.8085 kcal/mol (3325.6984 without restraints) Performing minimization step: 2786. Total energy = 3330.6800 kcal/mol (3324.5699 without restraints) Performing minimization step: 2787. Total energy = 3329.5528 kcal/mol (3323.4427 without restraints) Performing minimization step: 2788. Total energy = 3328.4264 kcal/mol (3322.3162 without restraints) Performing minimization step: 2789. Total energy = 3327.3010 kcal/mol (3321.1908 without restraints) Performing minimization step: 2790. Total energy = 3326.1767 kcal/mol (3320.0665 without restraints) Performing minimization step: 2791. Total energy = 3325.0539 kcal/mol (3318.9438 without restraints) Performing minimization step: 2792. Total energy = 3323.9319 kcal/mol (3317.8218 without restraints) Performing minimization step: 2793. Total energy = 3322.8110 kcal/mol (3316.7009 without restraints) Performing minimization step: 2794. Total energy = 3321.6910 kcal/mol (3315.5808 without restraints) Performing minimization step: 2795. Total energy = 3320.5721 kcal/mol (3314.4617 without restraints) Performing minimization step: 2796. Total energy = 3319.4543 kcal/mol (3313.3441 without restraints) Performing minimization step: 2797. Total energy = 3318.3377 kcal/mol (3312.2274 without restraints) Performing minimization step: 2798. Total energy = 3317.2217 kcal/mol (3311.1115 without restraints) Performing minimization step: 2799. Total energy = 3316.1069 kcal/mol (3309.9966 without restraints) Performing minimization step: 2800. Total energy = 3314.9931 kcal/mol (3308.8828 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 3313.8805 kcal/mol (3307.7702 without restraints) Performing minimization step: 2802. Total energy = 3312.7692 kcal/mol (3306.6589 without restraints) Performing minimization step: 2803. Total energy = 3311.6589 kcal/mol (3305.5485 without restraints) Performing minimization step: 2804. Total energy = 3310.5493 kcal/mol (3304.4389 without restraints) Performing minimization step: 2805. Total energy = 3309.4407 kcal/mol (3303.3303 without restraints) Performing minimization step: 2806. Total energy = 3308.3332 kcal/mol (3302.2228 without restraints) Performing minimization step: 2807. Total energy = 3307.2272 kcal/mol (3301.1167 without restraints) Performing minimization step: 2808. Total energy = 3306.1217 kcal/mol (3300.0111 without restraints) Performing minimization step: 2809. Total energy = 3305.0172 kcal/mol (3298.9066 without restraints) Performing minimization step: 2810. Total energy = 3303.9143 kcal/mol (3297.8039 without restraints) Performing minimization step: 2811. Total energy = 3302.8121 kcal/mol (3296.7016 without restraints) Performing minimization step: 2812. Total energy = 3301.7109 kcal/mol (3295.6003 without restraints) Performing minimization step: 2813. Total energy = 3300.6106 kcal/mol (3294.5000 without restraints) Performing minimization step: 2814. Total energy = 3299.5114 kcal/mol (3293.4010 without restraints) Performing minimization step: 2815. Total energy = 3298.4135 kcal/mol (3292.3028 without restraints) Performing minimization step: 2816. Total energy = 3297.3164 kcal/mol (3291.2057 without restraints) Performing minimization step: 2817. Total energy = 3296.2206 kcal/mol (3290.1100 without restraints) Performing minimization step: 2818. Total energy = 3295.1254 kcal/mol (3289.0146 without restraints) Performing minimization step: 2819. Total energy = 3294.0315 kcal/mol (3287.9207 without restraints) Performing minimization step: 2820. Total energy = 3292.9385 kcal/mol (3286.8277 without restraints) Performing minimization step: 2821. Total energy = 3291.8467 kcal/mol (3285.7359 without restraints) Performing minimization step: 2822. Total energy = 3290.7557 kcal/mol (3284.6449 without restraints) Performing minimization step: 2823. Total energy = 3289.6658 kcal/mol (3283.5549 without restraints) Performing minimization step: 2824. Total energy = 3288.5769 kcal/mol (3282.4660 without restraints) Performing minimization step: 2825. Total energy = 3287.4891 kcal/mol (3281.3781 without restraints) Performing minimization step: 2826. Total energy = 3286.4022 kcal/mol (3280.2912 without restraints) Performing minimization step: 2827. Total energy = 3285.3167 kcal/mol (3279.2057 without restraints) Performing minimization step: 2828. Total energy = 3284.2318 kcal/mol (3278.1208 without restraints) Performing minimization step: 2829. Total energy = 3283.1477 kcal/mol (3277.0366 without restraints) Performing minimization step: 2830. Total energy = 3282.0651 kcal/mol (3275.9540 without restraints) Performing minimization step: 2831. Total energy = 3280.9837 kcal/mol (3274.8727 without restraints) Performing minimization step: 2832. Total energy = 3279.9036 kcal/mol (3273.7925 without restraints) Performing minimization step: 2833. Total energy = 3278.8239 kcal/mol (3272.7127 without restraints) Performing minimization step: 2834. Total energy = 3277.7452 kcal/mol (3271.6340 without restraints) Performing minimization step: 2835. Total energy = 3276.6679 kcal/mol (3270.5568 without restraints) Performing minimization step: 2836. Total energy = 3275.5920 kcal/mol (3269.4808 without restraints) Performing minimization step: 2837. Total energy = 3274.5170 kcal/mol (3268.4058 without restraints) Performing minimization step: 2838. Total energy = 3273.4430 kcal/mol (3267.3316 without restraints) Performing minimization step: 2839. Total energy = 3272.3689 kcal/mol (3266.2575 without restraints) Performing minimization step: 2840. Total energy = 3271.2968 kcal/mol (3265.1854 without restraints) Performing minimization step: 2841. Total energy = 3270.2252 kcal/mol (3264.1137 without restraints) Performing minimization step: 2842. Total energy = 3269.1546 kcal/mol (3263.0430 without restraints) Performing minimization step: 2843. Total energy = 3268.0849 kcal/mol (3261.9733 without restraints) Performing minimization step: 2844. Total energy = 3267.0163 kcal/mol (3260.9047 without restraints) Performing minimization step: 2845. Total energy = 3265.9486 kcal/mol (3259.8370 without restraints) Performing minimization step: 2846. Total energy = 3264.8820 kcal/mol (3258.7703 without restraints) Performing minimization step: 2847. Total energy = 3263.8169 kcal/mol (3257.7053 without restraints) Performing minimization step: 2848. Total energy = 3262.7523 kcal/mol (3256.6406 without restraints) Performing minimization step: 2849. Total energy = 3261.6887 kcal/mol (3255.5769 without restraints) Performing minimization step: 2850. Total energy = 3260.6260 kcal/mol (3254.5142 without restraints) Performing minimization step: 2851. Total energy = 3259.5645 kcal/mol (3253.4527 without restraints) Performing minimization step: 2852. Total energy = 3258.5041 kcal/mol (3252.3922 without restraints) Performing minimization step: 2853. Total energy = 3257.4449 kcal/mol (3251.3329 without restraints) Performing minimization step: 2854. Total energy = 3256.3861 kcal/mol (3250.2741 without restraints) Performing minimization step: 2855. Total energy = 3255.3280 kcal/mol (3249.2159 without restraints) Performing minimization step: 2856. Total energy = 3254.2710 kcal/mol (3248.1588 without restraints) Performing minimization step: 2857. Total energy = 3253.2153 kcal/mol (3247.1032 without restraints) Performing minimization step: 2858. Total energy = 3252.1607 kcal/mol (3246.0485 without restraints) Performing minimization step: 2859. Total energy = 3251.1071 kcal/mol (3244.9950 without restraints) Performing minimization step: 2860. Total energy = 3250.0546 kcal/mol (3243.9424 without restraints) Performing minimization step: 2861. Total energy = 3249.0031 kcal/mol (3242.8908 without restraints) Performing minimization step: 2862. Total energy = 3247.9524 kcal/mol (3241.8400 without restraints) Performing minimization step: 2863. Total energy = 3246.9029 kcal/mol (3240.7905 without restraints) Performing minimization step: 2864. Total energy = 3245.8541 kcal/mol (3239.7417 without restraints) Performing minimization step: 2865. Total energy = 3244.8065 kcal/mol (3238.6940 without restraints) Performing minimization step: 2866. Total energy = 3243.7599 kcal/mol (3237.6474 without restraints) Performing minimization step: 2867. Total energy = 3242.7141 kcal/mol (3236.6015 without restraints) Performing minimization step: 2868. Total energy = 3241.6696 kcal/mol (3235.5570 without restraints) Performing minimization step: 2869. Total energy = 3240.6258 kcal/mol (3234.5131 without restraints) Performing minimization step: 2870. Total energy = 3239.5831 kcal/mol (3233.4702 without restraints) Performing minimization step: 2871. Total energy = 3238.5413 kcal/mol (3232.4285 without restraints) Performing minimization step: 2872. Total energy = 3237.5003 kcal/mol (3231.3874 without restraints) Performing minimization step: 2873. Total energy = 3236.4602 kcal/mol (3230.3474 without restraints) Performing minimization step: 2874. Total energy = 3235.4215 kcal/mol (3229.3085 without restraints) Performing minimization step: 2875. Total energy = 3234.3837 kcal/mol (3228.2707 without restraints) Performing minimization step: 2876. Total energy = 3233.3471 kcal/mol (3227.2342 without restraints) Performing minimization step: 2877. Total energy = 3232.3114 kcal/mol (3226.1983 without restraints) Performing minimization step: 2878. Total energy = 3231.2769 kcal/mol (3225.1638 without restraints) Performing minimization step: 2879. Total energy = 3230.2428 kcal/mol (3224.1296 without restraints) Performing minimization step: 2880. Total energy = 3229.2100 kcal/mol (3223.0968 without restraints) Performing minimization step: 2881. Total energy = 3228.1779 kcal/mol (3222.0644 without restraints) Performing minimization step: 2882. Total energy = 3227.1471 kcal/mol (3221.0337 without restraints) Performing minimization step: 2883. Total energy = 3226.1169 kcal/mol (3220.0034 without restraints) Performing minimization step: 2884. Total energy = 3225.0873 kcal/mol (3218.9739 without restraints) Performing minimization step: 2885. Total energy = 3224.0589 kcal/mol (3217.9453 without restraints) Performing minimization step: 2886. Total energy = 3223.0317 kcal/mol (3216.9181 without restraints) Performing minimization step: 2887. Total energy = 3222.0052 kcal/mol (3215.8915 without restraints) Performing minimization step: 2888. Total energy = 3220.9796 kcal/mol (3214.8659 without restraints) Performing minimization step: 2889. Total energy = 3219.9552 kcal/mol (3213.8416 without restraints) Performing minimization step: 2890. Total energy = 3218.9318 kcal/mol (3212.8180 without restraints) Performing minimization step: 2891. Total energy = 3217.9097 kcal/mol (3211.7960 without restraints) Performing minimization step: 2892. Total energy = 3216.8881 kcal/mol (3210.7742 without restraints) Performing minimization step: 2893. Total energy = 3215.8679 kcal/mol (3209.7540 without restraints) Performing minimization step: 2894. Total energy = 3214.8485 kcal/mol (3208.7345 without restraints) Performing minimization step: 2895. Total energy = 3213.8301 kcal/mol (3207.7161 without restraints) Performing minimization step: 2896. Total energy = 3212.8126 kcal/mol (3206.6984 without restraints) Performing minimization step: 2897. Total energy = 3211.7955 kcal/mol (3205.6813 without restraints) Performing minimization step: 2898. Total energy = 3210.7797 kcal/mol (3204.6654 without restraints) Performing minimization step: 2899. Total energy = 3209.7649 kcal/mol (3203.6507 without restraints) Performing minimization step: 2900. Total energy = 3208.7515 kcal/mol (3202.6371 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 3207.7384 kcal/mol (3201.6239 without restraints) Performing minimization step: 2902. Total energy = 3206.7262 kcal/mol (3200.6117 without restraints) Performing minimization step: 2903. Total energy = 3205.7146 kcal/mol (3199.6000 without restraints) Performing minimization step: 2904. Total energy = 3204.7045 kcal/mol (3198.5899 without restraints) Performing minimization step: 2905. Total energy = 3203.6960 kcal/mol (3197.5814 without restraints) Performing minimization step: 2906. Total energy = 3202.6879 kcal/mol (3196.5732 without restraints) Performing minimization step: 2907. Total energy = 3201.6803 kcal/mol (3195.5655 without restraints) Performing minimization step: 2908. Total energy = 3200.6741 kcal/mol (3194.5592 without restraints) Performing minimization step: 2909. Total energy = 3199.6687 kcal/mol (3193.5538 without restraints) Performing minimization step: 2910. Total energy = 3198.6643 kcal/mol (3192.5493 without restraints) Performing minimization step: 2911. Total energy = 3197.6608 kcal/mol (3191.5457 without restraints) Performing minimization step: 2912. Total energy = 3196.6579 kcal/mol (3190.5427 without restraints) Performing minimization step: 2913. Total energy = 3195.6562 kcal/mol (3189.5411 without restraints) Performing minimization step: 2914. Total energy = 3194.6554 kcal/mol (3188.5401 without restraints) Performing minimization step: 2915. Total energy = 3193.6555 kcal/mol (3187.5402 without restraints) Performing minimization step: 2916. Total energy = 3192.6567 kcal/mol (3186.5413 without restraints) Performing minimization step: 2917. Total energy = 3191.6589 kcal/mol (3185.5434 without restraints) Performing minimization step: 2918. Total energy = 3190.6618 kcal/mol (3184.5462 without restraints) Performing minimization step: 2919. Total energy = 3189.6656 kcal/mol (3183.5500 without restraints) Performing minimization step: 2920. Total energy = 3188.6708 kcal/mol (3182.5551 without restraints) Performing minimization step: 2921. Total energy = 3187.6765 kcal/mol (3181.5607 without restraints) Performing minimization step: 2922. Total energy = 3186.6832 kcal/mol (3180.5674 without restraints) Performing minimization step: 2923. Total energy = 3185.6908 kcal/mol (3179.5749 without restraints) Performing minimization step: 2924. Total energy = 3184.6992 kcal/mol (3178.5832 without restraints) Performing minimization step: 2925. Total energy = 3183.7086 kcal/mol (3177.5926 without restraints) Performing minimization step: 2926. Total energy = 3182.7192 kcal/mol (3176.6030 without restraints) Performing minimization step: 2927. Total energy = 3181.7304 kcal/mol (3175.6142 without restraints) Performing minimization step: 2928. Total energy = 3180.7426 kcal/mol (3174.6263 without restraints) Performing minimization step: 2929. Total energy = 3179.7557 kcal/mol (3173.6393 without restraints) Performing minimization step: 2930. Total energy = 3178.7698 kcal/mol (3172.6535 without restraints) Performing minimization step: 2931. Total energy = 3177.7846 kcal/mol (3171.6681 without restraints) Performing minimization step: 2932. Total energy = 3176.8004 kcal/mol (3170.6838 without restraints) Performing minimization step: 2933. Total energy = 3175.8172 kcal/mol (3169.7005 without restraints) Performing minimization step: 2934. Total energy = 3174.8349 kcal/mol (3168.7181 without restraints) Performing minimization step: 2935. Total energy = 3173.8534 kcal/mol (3167.7366 without restraints) Performing minimization step: 2936. Total energy = 3172.8729 kcal/mol (3166.7560 without restraints) Performing minimization step: 2937. Total energy = 3171.8939 kcal/mol (3165.7770 without restraints) Performing minimization step: 2938. Total energy = 3170.9154 kcal/mol (3164.7985 without restraints) Performing minimization step: 2939. Total energy = 3169.9376 kcal/mol (3163.8204 without restraints) Performing minimization step: 2940. Total energy = 3168.9609 kcal/mol (3162.8437 without restraints) Performing minimization step: 2941. Total energy = 3167.9851 kcal/mol (3161.8678 without restraints) Performing minimization step: 2942. Total energy = 3167.0103 kcal/mol (3160.8930 without restraints) Performing minimization step: 2943. Total energy = 3166.0363 kcal/mol (3159.9189 without restraints) Performing minimization step: 2944. Total energy = 3165.0636 kcal/mol (3158.9462 without restraints) Performing minimization step: 2945. Total energy = 3164.0915 kcal/mol (3157.9740 without restraints) Performing minimization step: 2946. Total energy = 3163.1203 kcal/mol (3157.0026 without restraints) Performing minimization step: 2947. Total energy = 3162.1500 kcal/mol (3156.0322 without restraints) Performing minimization step: 2948. Total energy = 3161.1806 kcal/mol (3155.0628 without restraints) Performing minimization step: 2949. Total energy = 3160.2120 kcal/mol (3154.0942 without restraints) Performing minimization step: 2950. Total energy = 3159.2446 kcal/mol (3153.1267 without restraints) Performing minimization step: 2951. Total energy = 3158.2780 kcal/mol (3152.1599 without restraints) Performing minimization step: 2952. Total energy = 3157.3120 kcal/mol (3151.1939 without restraints) Performing minimization step: 2953. Total energy = 3156.3473 kcal/mol (3150.2289 without restraints) Performing minimization step: 2954. Total energy = 3155.3829 kcal/mol (3149.2646 without restraints) Performing minimization step: 2955. Total energy = 3154.4205 kcal/mol (3148.3022 without restraints) Performing minimization step: 2956. Total energy = 3153.4580 kcal/mol (3147.3395 without restraints) Performing minimization step: 2957. Total energy = 3152.4963 kcal/mol (3146.3777 without restraints) Performing minimization step: 2958. Total energy = 3151.5356 kcal/mol (3145.4169 without restraints) Performing minimization step: 2959. Total energy = 3150.5759 kcal/mol (3144.4573 without restraints) Performing minimization step: 2960. Total energy = 3149.6172 kcal/mol (3143.4983 without restraints) Performing minimization step: 2961. Total energy = 3148.6593 kcal/mol (3142.5404 without restraints) Performing minimization step: 2962. Total energy = 3147.7025 kcal/mol (3141.5836 without restraints) Performing minimization step: 2963. Total energy = 3146.7470 kcal/mol (3140.6279 without restraints) Performing minimization step: 2964. Total energy = 3145.7921 kcal/mol (3139.6732 without restraints) Performing minimization step: 2965. Total energy = 3144.8379 kcal/mol (3138.7187 without restraints) Performing minimization step: 2966. Total energy = 3143.8841 kcal/mol (3137.7648 without restraints) Performing minimization step: 2967. Total energy = 3142.9315 kcal/mol (3136.8121 without restraints) Performing minimization step: 2968. Total energy = 3141.9799 kcal/mol (3135.8604 without restraints) Performing minimization step: 2969. Total energy = 3141.0298 kcal/mol (3134.9104 without restraints) Performing minimization step: 2970. Total energy = 3140.0810 kcal/mol (3133.9613 without restraints) Performing minimization step: 2971. Total energy = 3139.1321 kcal/mol (3133.0123 without restraints) Performing minimization step: 2972. Total energy = 3138.1838 kcal/mol (3132.0640 without restraints) Performing minimization step: 2973. Total energy = 3137.2365 kcal/mol (3131.1166 without restraints) Performing minimization step: 2974. Total energy = 3136.2902 kcal/mol (3130.1702 without restraints) Performing minimization step: 2975. Total energy = 3135.3450 kcal/mol (3129.2249 without restraints) Performing minimization step: 2976. Total energy = 3134.4007 kcal/mol (3128.2808 without restraints) Performing minimization step: 2977. Total energy = 3133.4570 kcal/mol (3127.3367 without restraints) Performing minimization step: 2978. Total energy = 3132.5141 kcal/mol (3126.3937 without restraints) Performing minimization step: 2979. Total energy = 3131.5720 kcal/mol (3125.4515 without restraints) Performing minimization step: 2980. Total energy = 3130.6309 kcal/mol (3124.5104 without restraints) Performing minimization step: 2981. Total energy = 3129.6906 kcal/mol (3123.5700 without restraints) Performing minimization step: 2982. Total energy = 3128.7513 kcal/mol (3122.6306 without restraints) Performing minimization step: 2983. Total energy = 3127.8131 kcal/mol (3121.6923 without restraints) Performing minimization step: 2984. Total energy = 3126.8754 kcal/mol (3120.7544 without restraints) Performing minimization step: 2985. Total energy = 3125.9386 kcal/mol (3119.8176 without restraints) Performing minimization step: 2986. Total energy = 3125.0026 kcal/mol (3118.8815 without restraints) Performing minimization step: 2987. Total energy = 3124.0674 kcal/mol (3117.9462 without restraints) Performing minimization step: 2988. Total energy = 3123.1334 kcal/mol (3117.0121 without restraints) Performing minimization step: 2989. Total energy = 3122.1998 kcal/mol (3116.0784 without restraints) Performing minimization step: 2990. Total energy = 3121.2675 kcal/mol (3115.1459 without restraints) Performing minimization step: 2991. Total energy = 3120.3359 kcal/mol (3114.2144 without restraints) Performing minimization step: 2992. Total energy = 3119.4056 kcal/mol (3113.2840 without restraints) Performing minimization step: 2993. Total energy = 3118.4761 kcal/mol (3112.3544 without restraints) Performing minimization step: 2994. Total energy = 3117.5470 kcal/mol (3111.4250 without restraints) Performing minimization step: 2995. Total energy = 3116.6184 kcal/mol (3110.4964 without restraints) Performing minimization step: 2996. Total energy = 3115.6910 kcal/mol (3109.5689 without restraints) Performing minimization step: 2997. Total energy = 3114.7645 kcal/mol (3108.6423 without restraints) Performing minimization step: 2998. Total energy = 3113.8389 kcal/mol (3107.7166 without restraints) Performing minimization step: 2999. Total energy = 3112.9137 kcal/mol (3106.7913 without restraints) Performing minimization step: 3000. Total energy = 3111.9900 kcal/mol (3105.8675 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 3111.0669 kcal/mol (3104.9443 without restraints) Performing minimization step: 3002. Total energy = 3110.1448 kcal/mol (3104.0221 without restraints) Performing minimization step: 3003. Total energy = 3109.2232 kcal/mol (3103.1005 without restraints) Performing minimization step: 3004. Total energy = 3108.3027 kcal/mol (3102.1798 without restraints) Performing minimization step: 3005. Total energy = 3107.3836 kcal/mol (3101.2606 without restraints) Performing minimization step: 3006. Total energy = 3106.4648 kcal/mol (3100.3417 without restraints) Performing minimization step: 3007. Total energy = 3105.5468 kcal/mol (3099.4236 without restraints) Performing minimization step: 3008. Total energy = 3104.6296 kcal/mol (3098.5063 without restraints) Performing minimization step: 3009. Total energy = 3103.7134 kcal/mol (3097.5900 without restraints) Performing minimization step: 3010. Total energy = 3102.7981 kcal/mol (3096.6746 without restraints) Performing minimization step: 3011. Total energy = 3101.8834 kcal/mol (3095.7598 without restraints) Performing minimization step: 3012. Total energy = 3100.9694 kcal/mol (3094.8457 without restraints) Performing minimization step: 3013. Total energy = 3100.0568 kcal/mol (3093.9331 without restraints) Performing minimization step: 3014. Total energy = 3099.1448 kcal/mol (3093.0209 without restraints) Performing minimization step: 3015. Total energy = 3098.2335 kcal/mol (3092.1095 without restraints) Performing minimization step: 3016. Total energy = 3097.3231 kcal/mol (3091.1990 without restraints) Performing minimization step: 3017. Total energy = 3096.4135 kcal/mol (3090.2893 without restraints) Performing minimization step: 3018. Total energy = 3095.5051 kcal/mol (3089.3807 without restraints) Performing minimization step: 3019. Total energy = 3094.5970 kcal/mol (3088.4725 without restraints) Performing minimization step: 3020. Total energy = 3093.6900 kcal/mol (3087.5655 without restraints) Performing minimization step: 3021. Total energy = 3092.7837 kcal/mol (3086.6591 without restraints) Performing minimization step: 3022. Total energy = 3091.8785 kcal/mol (3085.7537 without restraints) Performing minimization step: 3023. Total energy = 3090.9739 kcal/mol (3084.8491 without restraints) Performing minimization step: 3024. Total energy = 3090.0704 kcal/mol (3083.9455 without restraints) Performing minimization step: 3025. Total energy = 3089.1678 kcal/mol (3083.0428 without restraints) Performing minimization step: 3026. Total energy = 3088.2655 kcal/mol (3082.1404 without restraints) Performing minimization step: 3027. Total energy = 3087.3648 kcal/mol (3081.2395 without restraints) Performing minimization step: 3028. Total energy = 3086.4640 kcal/mol (3080.3386 without restraints) Performing minimization step: 3029. Total energy = 3085.5653 kcal/mol (3079.4398 without restraints) Performing minimization step: 3030. Total energy = 3084.6666 kcal/mol (3078.5410 without restraints) Performing minimization step: 3031. Total energy = 3083.7686 kcal/mol (3077.6429 without restraints) Performing minimization step: 3032. Total energy = 3082.8718 kcal/mol (3076.7461 without restraints) Performing minimization step: 3033. Total energy = 3081.9758 kcal/mol (3075.8499 without restraints) Performing minimization step: 3034. Total energy = 3081.0803 kcal/mol (3074.9543 without restraints) Performing minimization step: 3035. Total energy = 3080.1856 kcal/mol (3074.0594 without restraints) Performing minimization step: 3036. Total energy = 3079.2919 kcal/mol (3073.1656 without restraints) Performing minimization step: 3037. Total energy = 3078.3989 kcal/mol (3072.2725 without restraints) Performing minimization step: 3038. Total energy = 3077.5069 kcal/mol (3071.3804 without restraints) Performing minimization step: 3039. Total energy = 3076.6157 kcal/mol (3070.4892 without restraints) Performing minimization step: 3040. Total energy = 3075.7253 kcal/mol (3069.5986 without restraints) Performing minimization step: 3041. Total energy = 3074.8358 kcal/mol (3068.7090 without restraints) Performing minimization step: 3042. Total energy = 3073.9473 kcal/mol (3067.8204 without restraints) Performing minimization step: 3043. Total energy = 3073.0597 kcal/mol (3066.9328 without restraints) Performing minimization step: 3044. Total energy = 3072.1732 kcal/mol (3066.0461 without restraints) Performing minimization step: 3045. Total energy = 3071.2869 kcal/mol (3065.1596 without restraints) Performing minimization step: 3046. Total energy = 3070.4015 kcal/mol (3064.2741 without restraints) Performing minimization step: 3047. Total energy = 3069.5162 kcal/mol (3063.3888 without restraints) Performing minimization step: 3048. Total energy = 3068.6323 kcal/mol (3062.5047 without restraints) Performing minimization step: 3049. Total energy = 3067.7491 kcal/mol (3061.6214 without restraints) Performing minimization step: 3050. Total energy = 3066.8669 kcal/mol (3060.7391 without restraints) Performing minimization step: 3051. Total energy = 3065.9852 kcal/mol (3059.8573 without restraints) Performing minimization step: 3052. Total energy = 3065.1045 kcal/mol (3058.9764 without restraints) Performing minimization step: 3053. Total energy = 3064.2246 kcal/mol (3058.0964 without restraints) Performing minimization step: 3054. Total energy = 3063.3455 kcal/mol (3057.2173 without restraints) Performing minimization step: 3055. Total energy = 3062.4679 kcal/mol (3056.3398 without restraints) Performing minimization step: 3056. Total energy = 3061.5910 kcal/mol (3055.4625 without restraints) Performing minimization step: 3057. Total energy = 3060.7142 kcal/mol (3054.5856 without restraints) Performing minimization step: 3058. Total energy = 3059.8386 kcal/mol (3053.7099 without restraints) Performing minimization step: 3059. Total energy = 3058.9635 kcal/mol (3052.8346 without restraints) Performing minimization step: 3060. Total energy = 3058.0891 kcal/mol (3051.9601 without restraints) Performing minimization step: 3061. Total energy = 3057.2156 kcal/mol (3051.0865 without restraints) Performing minimization step: 3062. Total energy = 3056.3429 kcal/mol (3050.2137 without restraints) Performing minimization step: 3063. Total energy = 3055.4709 kcal/mol (3049.3416 without restraints) Performing minimization step: 3064. Total energy = 3054.5998 kcal/mol (3048.4704 without restraints) Performing minimization step: 3065. Total energy = 3053.7297 kcal/mol (3047.6002 without restraints) Performing minimization step: 3066. Total energy = 3052.8604 kcal/mol (3046.7307 without restraints) Performing minimization step: 3067. Total energy = 3051.9916 kcal/mol (3045.8618 without restraints) Performing minimization step: 3068. Total energy = 3051.1243 kcal/mol (3044.9944 without restraints) Performing minimization step: 3069. Total energy = 3050.2571 kcal/mol (3044.1271 without restraints) Performing minimization step: 3070. Total energy = 3049.3914 kcal/mol (3043.2612 without restraints) Performing minimization step: 3071. Total energy = 3048.5261 kcal/mol (3042.3958 without restraints) Performing minimization step: 3072. Total energy = 3047.6615 kcal/mol (3041.5311 without restraints) Performing minimization step: 3073. Total energy = 3046.7977 kcal/mol (3040.6672 without restraints) Performing minimization step: 3074. Total energy = 3045.9345 kcal/mol (3039.8039 without restraints) Performing minimization step: 3075. Total energy = 3045.0722 kcal/mol (3038.9415 without restraints) Performing minimization step: 3076. Total energy = 3044.2106 kcal/mol (3038.0797 without restraints) Performing minimization step: 3077. Total energy = 3043.3495 kcal/mol (3037.2185 without restraints) Performing minimization step: 3078. Total energy = 3042.4895 kcal/mol (3036.3584 without restraints) Performing minimization step: 3079. Total energy = 3041.6306 kcal/mol (3035.4994 without restraints) Performing minimization step: 3080. Total energy = 3040.7722 kcal/mol (3034.6408 without restraints) Performing minimization step: 3081. Total energy = 3039.9146 kcal/mol (3033.7831 without restraints) Performing minimization step: 3082. Total energy = 3039.0577 kcal/mol (3032.9260 without restraints) Performing minimization step: 3083. Total energy = 3038.2015 kcal/mol (3032.0697 without restraints) Performing minimization step: 3084. Total energy = 3037.3464 kcal/mol (3031.2146 without restraints) Performing minimization step: 3085. Total energy = 3036.4919 kcal/mol (3030.3600 without restraints) Performing minimization step: 3086. Total energy = 3035.6384 kcal/mol (3029.5064 without restraints) Performing minimization step: 3087. Total energy = 3034.7857 kcal/mol (3028.6535 without restraints) Performing minimization step: 3088. Total energy = 3033.9334 kcal/mol (3027.8010 without restraints) Performing minimization step: 3089. Total energy = 3033.0824 kcal/mol (3026.9499 without restraints) Performing minimization step: 3090. Total energy = 3032.2318 kcal/mol (3026.0992 without restraints) Performing minimization step: 3091. Total energy = 3031.3819 kcal/mol (3025.2490 without restraints) Performing minimization step: 3092. Total energy = 3030.5326 kcal/mol (3024.3997 without restraints) Performing minimization step: 3093. Total energy = 3029.6843 kcal/mol (3023.5513 without restraints) Performing minimization step: 3094. Total energy = 3028.8366 kcal/mol (3022.7035 without restraints) Performing minimization step: 3095. Total energy = 3027.9901 kcal/mol (3021.8567 without restraints) Performing minimization step: 3096. Total energy = 3027.1442 kcal/mol (3021.0109 without restraints) Performing minimization step: 3097. Total energy = 3026.2993 kcal/mol (3020.1659 without restraints) Performing minimization step: 3098. Total energy = 3025.4550 kcal/mol (3019.3214 without restraints) Performing minimization step: 3099. Total energy = 3024.6114 kcal/mol (3018.4776 without restraints) Performing minimization step: 3100. Total energy = 3023.7684 kcal/mol (3017.6345 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 3022.9260 kcal/mol (3016.7920 without restraints) Performing minimization step: 3102. Total energy = 3022.0847 kcal/mol (3015.9505 without restraints) Performing minimization step: 3103. Total energy = 3021.2439 kcal/mol (3015.1096 without restraints) Performing minimization step: 3104. Total energy = 3020.4038 kcal/mol (3014.2692 without restraints) Performing minimization step: 3105. Total energy = 3019.5649 kcal/mol (3013.4304 without restraints) Performing minimization step: 3106. Total energy = 3018.7270 kcal/mol (3012.5924 without restraints) Performing minimization step: 3107. Total energy = 3017.8894 kcal/mol (3011.7546 without restraints) Performing minimization step: 3108. Total energy = 3017.0525 kcal/mol (3010.9176 without restraints) Performing minimization step: 3109. Total energy = 3016.2167 kcal/mol (3010.0816 without restraints) Performing minimization step: 3110. Total energy = 3015.3813 kcal/mol (3009.2460 without restraints) Performing minimization step: 3111. Total energy = 3014.5466 kcal/mol (3008.4112 without restraints) Performing minimization step: 3112. Total energy = 3013.7131 kcal/mol (3007.5776 without restraints) Performing minimization step: 3113. Total energy = 3012.8801 kcal/mol (3006.7445 without restraints) Performing minimization step: 3114. Total energy = 3012.0477 kcal/mol (3005.9119 without restraints) Performing minimization step: 3115. Total energy = 3011.2160 kcal/mol (3005.0801 without restraints) Performing minimization step: 3116. Total energy = 3010.3851 kcal/mol (3004.2490 without restraints) Performing minimization step: 3117. Total energy = 3009.5549 kcal/mol (3003.4187 without restraints) Performing minimization step: 3118. Total energy = 3008.7255 kcal/mol (3002.5892 without restraints) Performing minimization step: 3119. Total energy = 3007.8971 kcal/mol (3001.7606 without restraints) Performing minimization step: 3120. Total energy = 3007.0691 kcal/mol (3000.9326 without restraints) Performing minimization step: 3121. Total energy = 3006.2425 kcal/mol (3000.1058 without restraints) Performing minimization step: 3122. Total energy = 3005.4161 kcal/mol (2999.2792 without restraints) Performing minimization step: 3123. Total energy = 3004.5904 kcal/mol (2998.4534 without restraints) Performing minimization step: 3124. Total energy = 3003.7655 kcal/mol (2997.6284 without restraints) Performing minimization step: 3125. Total energy = 3002.9415 kcal/mol (2996.8043 without restraints) Performing minimization step: 3126. Total energy = 3002.1182 kcal/mol (2995.9808 without restraints) Performing minimization step: 3127. Total energy = 3001.2956 kcal/mol (2995.1581 without restraints) Performing minimization step: 3128. Total energy = 3000.4736 kcal/mol (2994.3358 without restraints) Performing minimization step: 3129. Total energy = 2999.6525 kcal/mol (2993.5148 without restraints) Performing minimization step: 3130. Total energy = 2998.8322 kcal/mol (2992.6943 without restraints) Performing minimization step: 3131. Total energy = 2998.0123 kcal/mol (2991.8743 without restraints) Performing minimization step: 3132. Total energy = 2997.1933 kcal/mol (2991.0551 without restraints) Performing minimization step: 3133. Total energy = 2996.3751 kcal/mol (2990.2367 without restraints) Performing minimization step: 3134. Total energy = 2995.5578 kcal/mol (2989.4193 without restraints) Performing minimization step: 3135. Total energy = 2994.7410 kcal/mol (2988.6024 without restraints) Performing minimization step: 3136. Total energy = 2993.9248 kcal/mol (2987.7860 without restraints) Performing minimization step: 3137. Total energy = 2993.1095 kcal/mol (2986.9706 without restraints) Performing minimization step: 3138. Total energy = 2992.2949 kcal/mol (2986.1559 without restraints) Performing minimization step: 3139. Total energy = 2991.4812 kcal/mol (2985.3420 without restraints) Performing minimization step: 3140. Total energy = 2990.6681 kcal/mol (2984.5288 without restraints) Performing minimization step: 3141. Total energy = 2989.8559 kcal/mol (2983.7166 without restraints) Performing minimization step: 3142. Total energy = 2989.0446 kcal/mol (2982.9050 without restraints) Performing minimization step: 3143. Total energy = 2988.2341 kcal/mol (2982.0944 without restraints) Performing minimization step: 3144. Total energy = 2987.4240 kcal/mol (2981.2841 without restraints) Performing minimization step: 3145. Total energy = 2986.6143 kcal/mol (2980.4743 without restraints) Performing minimization step: 3146. Total energy = 2985.8053 kcal/mol (2979.6652 without restraints) Performing minimization step: 3147. Total energy = 2984.9975 kcal/mol (2978.8572 without restraints) Performing minimization step: 3148. Total energy = 2984.1902 kcal/mol (2978.0498 without restraints) Performing minimization step: 3149. Total energy = 2983.3839 kcal/mol (2977.2433 without restraints) Performing minimization step: 3150. Total energy = 2982.5780 kcal/mol (2976.4372 without restraints) Performing minimization step: 3151. Total energy = 2981.7726 kcal/mol (2975.6317 without restraints) Performing minimization step: 3152. Total energy = 2980.9685 kcal/mol (2974.8276 without restraints) Performing minimization step: 3153. Total energy = 2980.1647 kcal/mol (2974.0235 without restraints) Performing minimization step: 3154. Total energy = 2979.3617 kcal/mol (2973.2204 without restraints) Performing minimization step: 3155. Total energy = 2978.5601 kcal/mol (2972.4188 without restraints) Performing minimization step: 3156. Total energy = 2977.7587 kcal/mol (2971.6171 without restraints) Performing minimization step: 3157. Total energy = 2976.9579 kcal/mol (2970.8161 without restraints) Performing minimization step: 3158. Total energy = 2976.1582 kcal/mol (2970.0163 without restraints) Performing minimization step: 3159. Total energy = 2975.3600 kcal/mol (2969.2180 without restraints) Performing minimization step: 3160. Total energy = 2974.5619 kcal/mol (2968.4197 without restraints) Performing minimization step: 3161. Total energy = 2973.7640 kcal/mol (2967.6217 without restraints) Performing minimization step: 3162. Total energy = 2972.9666 kcal/mol (2966.8241 without restraints) Performing minimization step: 3163. Total energy = 2972.1704 kcal/mol (2966.0279 without restraints) Performing minimization step: 3164. Total energy = 2971.3747 kcal/mol (2965.2320 without restraints) Performing minimization step: 3165. Total energy = 2970.5798 kcal/mol (2964.4369 without restraints) Performing minimization step: 3166. Total energy = 2969.7854 kcal/mol (2963.6423 without restraints) Performing minimization step: 3167. Total energy = 2968.9921 kcal/mol (2962.8490 without restraints) Performing minimization step: 3168. Total energy = 2968.1992 kcal/mol (2962.0558 without restraints) Performing minimization step: 3169. Total energy = 2967.4068 kcal/mol (2961.2634 without restraints) Performing minimization step: 3170. Total energy = 2966.6152 kcal/mol (2960.4716 without restraints) Performing minimization step: 3171. Total energy = 2965.8240 kcal/mol (2959.6802 without restraints) Performing minimization step: 3172. Total energy = 2965.0341 kcal/mol (2958.8901 without restraints) Performing minimization step: 3173. Total energy = 2964.2446 kcal/mol (2958.1005 without restraints) Performing minimization step: 3174. Total energy = 2963.4559 kcal/mol (2957.3118 without restraints) Performing minimization step: 3175. Total energy = 2962.6681 kcal/mol (2956.5238 without restraints) Performing minimization step: 3176. Total energy = 2961.8807 kcal/mol (2955.7362 without restraints) Performing minimization step: 3177. Total energy = 2961.0943 kcal/mol (2954.9496 without restraints) Performing minimization step: 3178. Total energy = 2960.3082 kcal/mol (2954.1633 without restraints) Performing minimization step: 3179. Total energy = 2959.5229 kcal/mol (2953.3779 without restraints) Performing minimization step: 3180. Total energy = 2958.7384 kcal/mol (2952.5933 without restraints) Performing minimization step: 3181. Total energy = 2957.9545 kcal/mol (2951.8093 without restraints) Performing minimization step: 3182. Total energy = 2957.1718 kcal/mol (2951.0264 without restraints) Performing minimization step: 3183. Total energy = 2956.3895 kcal/mol (2950.2441 without restraints) Performing minimization step: 3184. Total energy = 2955.6079 kcal/mol (2949.4622 without restraints) Performing minimization step: 3185. Total energy = 2954.8265 kcal/mol (2948.6807 without restraints) Performing minimization step: 3186. Total energy = 2954.0463 kcal/mol (2947.9002 without restraints) Performing minimization step: 3187. Total energy = 2953.2673 kcal/mol (2947.1212 without restraints) Performing minimization step: 3188. Total energy = 2952.4888 kcal/mol (2946.3425 without restraints) Performing minimization step: 3189. Total energy = 2951.7107 kcal/mol (2945.5642 without restraints) Performing minimization step: 3190. Total energy = 2950.9334 kcal/mol (2944.7869 without restraints) Performing minimization step: 3191. Total energy = 2950.1572 kcal/mol (2944.0105 without restraints) Performing minimization step: 3192. Total energy = 2949.3811 kcal/mol (2943.2341 without restraints) Performing minimization step: 3193. Total energy = 2948.6062 kcal/mol (2942.4592 without restraints) Performing minimization step: 3194. Total energy = 2947.8314 kcal/mol (2941.6841 without restraints) Performing minimization step: 3195. Total energy = 2947.0572 kcal/mol (2940.9098 without restraints) Performing minimization step: 3196. Total energy = 2946.2837 kcal/mol (2940.1361 without restraints) Performing minimization step: 3197. Total energy = 2945.5108 kcal/mol (2939.3631 without restraints) Performing minimization step: 3198. Total energy = 2944.7391 kcal/mol (2938.5912 without restraints) Performing minimization step: 3199. Total energy = 2943.9676 kcal/mol (2937.8195 without restraints) Performing minimization step: 3200. Total energy = 2943.1968 kcal/mol (2937.0486 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 2942.4267 kcal/mol (2936.2783 without restraints) Performing minimization step: 3202. Total energy = 2941.6571 kcal/mol (2935.5084 without restraints) Performing minimization step: 3203. Total energy = 2940.8881 kcal/mol (2934.7395 without restraints) Performing minimization step: 3204. Total energy = 2940.1202 kcal/mol (2933.9714 without restraints) Performing minimization step: 3205. Total energy = 2939.3528 kcal/mol (2933.2038 without restraints) Performing minimization step: 3206. Total energy = 2938.5861 kcal/mol (2932.4369 without restraints) Performing minimization step: 3207. Total energy = 2937.8200 kcal/mol (2931.6707 without restraints) Performing minimization step: 3208. Total energy = 2937.0546 kcal/mol (2930.9051 without restraints) Performing minimization step: 3209. Total energy = 2936.2895 kcal/mol (2930.1399 without restraints) Performing minimization step: 3210. Total energy = 2935.5256 kcal/mol (2929.3759 without restraints) Performing minimization step: 3211. Total energy = 2934.7623 kcal/mol (2928.6123 without restraints) Performing minimization step: 3212. Total energy = 2933.9996 kcal/mol (2927.8495 without restraints) Performing minimization step: 3213. Total energy = 2933.2378 kcal/mol (2927.0877 without restraints) Performing minimization step: 3214. Total energy = 2932.4769 kcal/mol (2926.3266 without restraints) Performing minimization step: 3215. Total energy = 2931.7165 kcal/mol (2925.5660 without restraints) Performing minimization step: 3216. Total energy = 2930.9565 kcal/mol (2924.8057 without restraints) Performing minimization step: 3217. Total energy = 2930.1970 kcal/mol (2924.0461 without restraints) Performing minimization step: 3218. Total energy = 2929.4382 kcal/mol (2923.2872 without restraints) Performing minimization step: 3219. Total energy = 2928.6804 kcal/mol (2922.5292 without restraints) Performing minimization step: 3220. Total energy = 2927.9230 kcal/mol (2921.7716 without restraints) Performing minimization step: 3221. Total energy = 2927.1665 kcal/mol (2921.0149 without restraints) Performing minimization step: 3222. Total energy = 2926.4107 kcal/mol (2920.2591 without restraints) Performing minimization step: 3223. Total energy = 2925.6553 kcal/mol (2919.5034 without restraints) Performing minimization step: 3224. Total energy = 2924.9009 kcal/mol (2918.7491 without restraints) Performing minimization step: 3225. Total energy = 2924.1472 kcal/mol (2917.9950 without restraints) Performing minimization step: 3226. Total energy = 2923.3944 kcal/mol (2917.2420 without restraints) Performing minimization step: 3227. Total energy = 2922.6418 kcal/mol (2916.4893 without restraints) Performing minimization step: 3228. Total energy = 2921.8901 kcal/mol (2915.7376 without restraints) Performing minimization step: 3229. Total energy = 2921.1392 kcal/mol (2914.9863 without restraints) Performing minimization step: 3230. Total energy = 2920.3890 kcal/mol (2914.2360 without restraints) Performing minimization step: 3231. Total energy = 2919.6389 kcal/mol (2913.4857 without restraints) Performing minimization step: 3232. Total energy = 2918.8895 kcal/mol (2912.7361 without restraints) Performing minimization step: 3233. Total energy = 2918.1407 kcal/mol (2911.9872 without restraints) Performing minimization step: 3234. Total energy = 2917.3926 kcal/mol (2911.2389 without restraints) Performing minimization step: 3235. Total energy = 2916.6450 kcal/mol (2910.4912 without restraints) Performing minimization step: 3236. Total energy = 2915.8984 kcal/mol (2909.7444 without restraints) Performing minimization step: 3237. Total energy = 2915.1525 kcal/mol (2908.9983 without restraints) Performing minimization step: 3238. Total energy = 2914.4071 kcal/mol (2908.2528 without restraints) Performing minimization step: 3239. Total energy = 2913.6622 kcal/mol (2907.5077 without restraints) Performing minimization step: 3240. Total energy = 2912.9182 kcal/mol (2906.7635 without restraints) Performing minimization step: 3241. Total energy = 2912.1746 kcal/mol (2906.0197 without restraints) Performing minimization step: 3242. Total energy = 2911.4320 kcal/mol (2905.2773 without restraints) Performing minimization step: 3243. Total energy = 2910.6897 kcal/mol (2904.5345 without restraints) Performing minimization step: 3244. Total energy = 2909.9483 kcal/mol (2903.7929 without restraints) Performing minimization step: 3245. Total energy = 2909.2072 kcal/mol (2903.0517 without restraints) Performing minimization step: 3246. Total energy = 2908.4668 kcal/mol (2902.3111 without restraints) Performing minimization step: 3247. Total energy = 2907.7275 kcal/mol (2901.5716 without restraints) Performing minimization step: 3248. Total energy = 2906.9885 kcal/mol (2900.8326 without restraints) Performing minimization step: 3249. Total energy = 2906.2502 kcal/mol (2900.0940 without restraints) Performing minimization step: 3250. Total energy = 2905.5124 kcal/mol (2899.3561 without restraints) Performing minimization step: 3251. Total energy = 2904.7752 kcal/mol (2898.6187 without restraints) Performing minimization step: 3252. Total energy = 2904.0387 kcal/mol (2897.8821 without restraints) Performing minimization step: 3253. Total energy = 2903.3034 kcal/mol (2897.1466 without restraints) Performing minimization step: 3254. Total energy = 2902.5682 kcal/mol (2896.4112 without restraints) Performing minimization step: 3255. Total energy = 2901.8337 kcal/mol (2895.6765 without restraints) Performing minimization step: 3256. Total energy = 2901.1000 kcal/mol (2894.9426 without restraints) Performing minimization step: 3257. Total energy = 2900.3668 kcal/mol (2894.2093 without restraints) Performing minimization step: 3258. Total energy = 2899.6343 kcal/mol (2893.4766 without restraints) Performing minimization step: 3259. Total energy = 2898.9025 kcal/mol (2892.7446 without restraints) Performing minimization step: 3260. Total energy = 2898.1714 kcal/mol (2892.0133 without restraints) Performing minimization step: 3261. Total energy = 2897.4410 kcal/mol (2891.2828 without restraints) Performing minimization step: 3262. Total energy = 2896.7110 kcal/mol (2890.5526 without restraints) Performing minimization step: 3263. Total energy = 2895.9813 kcal/mol (2889.8228 without restraints) Performing minimization step: 3264. Total energy = 2895.2524 kcal/mol (2889.0936 without restraints) Performing minimization step: 3265. Total energy = 2894.5240 kcal/mol (2888.3651 without restraints) Performing minimization step: 3266. Total energy = 2893.7964 kcal/mol (2887.6373 without restraints) Performing minimization step: 3267. Total energy = 2893.0695 kcal/mol (2886.9102 without restraints) Performing minimization step: 3268. Total energy = 2892.3435 kcal/mol (2886.1841 without restraints) Performing minimization step: 3269. Total energy = 2891.6177 kcal/mol (2885.4581 without restraints) Performing minimization step: 3270. Total energy = 2890.8928 kcal/mol (2884.7330 without restraints) Performing minimization step: 3271. Total energy = 2890.1683 kcal/mol (2884.0083 without restraints) Performing minimization step: 3272. Total energy = 2889.4443 kcal/mol (2883.2842 without restraints) Performing minimization step: 3273. Total energy = 2888.7210 kcal/mol (2882.5606 without restraints) Performing minimization step: 3274. Total energy = 2887.9986 kcal/mol (2881.8382 without restraints) Performing minimization step: 3275. Total energy = 2887.2773 kcal/mol (2881.1167 without restraints) Performing minimization step: 3276. Total energy = 2886.5560 kcal/mol (2880.3952 without restraints) Performing minimization step: 3277. Total energy = 2885.8352 kcal/mol (2879.6742 without restraints) Performing minimization step: 3278. Total energy = 2885.1148 kcal/mol (2878.9536 without restraints) Performing minimization step: 3279. Total energy = 2884.3952 kcal/mol (2878.2338 without restraints) Performing minimization step: 3280. Total energy = 2883.6762 kcal/mol (2877.5146 without restraints) Performing minimization step: 3281. Total energy = 2882.9578 kcal/mol (2876.7961 without restraints) Performing minimization step: 3282. Total energy = 2882.2400 kcal/mol (2876.0781 without restraints) Performing minimization step: 3283. Total energy = 2881.5230 kcal/mol (2875.3610 without restraints) Performing minimization step: 3284. Total energy = 2880.8065 kcal/mol (2874.6443 without restraints) Performing minimization step: 3285. Total energy = 2880.0908 kcal/mol (2873.9283 without restraints) Performing minimization step: 3286. Total energy = 2879.3756 kcal/mol (2873.2130 without restraints) Performing minimization step: 3287. Total energy = 2878.6609 kcal/mol (2872.4981 without restraints) Performing minimization step: 3288. Total energy = 2877.9466 kcal/mol (2871.7836 without restraints) Performing minimization step: 3289. Total energy = 2877.2333 kcal/mol (2871.0702 without restraints) Performing minimization step: 3290. Total energy = 2876.5205 kcal/mol (2870.3572 without restraints) Performing minimization step: 3291. Total energy = 2875.8082 kcal/mol (2869.6448 without restraints) Performing minimization step: 3292. Total energy = 2875.0964 kcal/mol (2868.9327 without restraints) Performing minimization step: 3293. Total energy = 2874.3854 kcal/mol (2868.2216 without restraints) Performing minimization step: 3294. Total energy = 2873.6749 kcal/mol (2867.5109 without restraints) Performing minimization step: 3295. Total energy = 2872.9652 kcal/mol (2866.8010 without restraints) Performing minimization step: 3296. Total energy = 2872.2563 kcal/mol (2866.0919 without restraints) Performing minimization step: 3297. Total energy = 2871.5479 kcal/mol (2865.3835 without restraints) Performing minimization step: 3298. Total energy = 2870.8401 kcal/mol (2864.6755 without restraints) Performing minimization step: 3299. Total energy = 2870.1328 kcal/mol (2863.9678 without restraints) Performing minimization step: 3300. Total energy = 2869.4258 kcal/mol (2863.2607 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 2868.7193 kcal/mol (2862.5540 without restraints) Performing minimization step: 3302. Total energy = 2868.0137 kcal/mol (2861.8482 without restraints) Performing minimization step: 3303. Total energy = 2867.3085 kcal/mol (2861.1428 without restraints) Performing minimization step: 3304. Total energy = 2866.6041 kcal/mol (2860.4383 without restraints) Performing minimization step: 3305. Total energy = 2865.9012 kcal/mol (2859.7352 without restraints) Performing minimization step: 3306. Total energy = 2865.1978 kcal/mol (2859.0315 without restraints) Performing minimization step: 3307. Total energy = 2864.4950 kcal/mol (2858.3286 without restraints) Performing minimization step: 3308. Total energy = 2863.7932 kcal/mol (2857.6267 without restraints) Performing minimization step: 3309. Total energy = 2863.0917 kcal/mol (2856.9250 without restraints) Performing minimization step: 3310. Total energy = 2862.3910 kcal/mol (2856.2240 without restraints) Performing minimization step: 3311. Total energy = 2861.6904 kcal/mol (2855.5233 without restraints) Performing minimization step: 3312. Total energy = 2860.9907 kcal/mol (2854.8233 without restraints) Performing minimization step: 3313. Total energy = 2860.2918 kcal/mol (2854.1242 without restraints) Performing minimization step: 3314. Total energy = 2859.5936 kcal/mol (2853.4259 without restraints) Performing minimization step: 3315. Total energy = 2858.8961 kcal/mol (2852.7282 without restraints) Performing minimization step: 3316. Total energy = 2858.1986 kcal/mol (2852.0305 without restraints) Performing minimization step: 3317. Total energy = 2857.5016 kcal/mol (2851.3332 without restraints) Performing minimization step: 3318. Total energy = 2856.8045 kcal/mol (2850.6361 without restraints) Performing minimization step: 3319. Total energy = 2856.1090 kcal/mol (2849.9403 without restraints) Performing minimization step: 3320. Total energy = 2855.4138 kcal/mol (2849.2451 without restraints) Performing minimization step: 3321. Total energy = 2854.7196 kcal/mol (2848.5507 without restraints) Performing minimization step: 3322. Total energy = 2854.0263 kcal/mol (2847.8571 without restraints) Performing minimization step: 3323. Total energy = 2853.3330 kcal/mol (2847.1636 without restraints) Performing minimization step: 3324. Total energy = 2852.6402 kcal/mol (2846.4707 without restraints) Performing minimization step: 3325. Total energy = 2851.9478 kcal/mol (2845.7782 without restraints) Performing minimization step: 3326. Total energy = 2851.2564 kcal/mol (2845.0865 without restraints) Performing minimization step: 3327. Total energy = 2850.5661 kcal/mol (2844.3961 without restraints) Performing minimization step: 3328. Total energy = 2849.8760 kcal/mol (2843.7057 without restraints) Performing minimization step: 3329. Total energy = 2849.1865 kcal/mol (2843.0162 without restraints) Performing minimization step: 3330. Total energy = 2848.4979 kcal/mol (2842.3271 without restraints) Performing minimization step: 3331. Total energy = 2847.8093 kcal/mol (2841.6385 without restraints) Performing minimization step: 3332. Total energy = 2847.1217 kcal/mol (2840.9507 without restraints) Performing minimization step: 3333. Total energy = 2846.4346 kcal/mol (2840.2633 without restraints) Performing minimization step: 3334. Total energy = 2845.7476 kcal/mol (2839.5761 without restraints) Performing minimization step: 3335. Total energy = 2845.0611 kcal/mol (2838.8895 without restraints) Performing minimization step: 3336. Total energy = 2844.3754 kcal/mol (2838.2036 without restraints) Performing minimization step: 3337. Total energy = 2843.6901 kcal/mol (2837.5181 without restraints) Performing minimization step: 3338. Total energy = 2843.0055 kcal/mol (2836.8334 without restraints) Performing minimization step: 3339. Total energy = 2842.3216 kcal/mol (2836.1492 without restraints) Performing minimization step: 3340. Total energy = 2841.6380 kcal/mol (2835.4654 without restraints) Performing minimization step: 3341. Total energy = 2840.9555 kcal/mol (2834.7828 without restraints) Performing minimization step: 3342. Total energy = 2840.2731 kcal/mol (2834.1001 without restraints) Performing minimization step: 3343. Total energy = 2839.5913 kcal/mol (2833.4182 without restraints) Performing minimization step: 3344. Total energy = 2838.9101 kcal/mol (2832.7367 without restraints) Performing minimization step: 3345. Total energy = 2838.2296 kcal/mol (2832.0560 without restraints) Performing minimization step: 3346. Total energy = 2837.5494 kcal/mol (2831.3757 without restraints) Performing minimization step: 3347. Total energy = 2836.8700 kcal/mol (2830.6962 without restraints) Performing minimization step: 3348. Total energy = 2836.1910 kcal/mol (2830.0169 without restraints) Performing minimization step: 3349. Total energy = 2835.5127 kcal/mol (2829.3384 without restraints) Performing minimization step: 3350. Total energy = 2834.8347 kcal/mol (2828.6601 without restraints) Performing minimization step: 3351. Total energy = 2834.1574 kcal/mol (2827.9827 without restraints) Performing minimization step: 3352. Total energy = 2833.4803 kcal/mol (2827.3054 without restraints) Performing minimization step: 3353. Total energy = 2832.8041 kcal/mol (2826.6291 without restraints) Performing minimization step: 3354. Total energy = 2832.1285 kcal/mol (2825.9532 without restraints) Performing minimization step: 3355. Total energy = 2831.4537 kcal/mol (2825.2782 without restraints) Performing minimization step: 3356. Total energy = 2830.7793 kcal/mol (2824.6037 without restraints) Performing minimization step: 3357. Total energy = 2830.1054 kcal/mol (2823.9295 without restraints) Performing minimization step: 3358. Total energy = 2829.4326 kcal/mol (2823.2565 without restraints) Performing minimization step: 3359. Total energy = 2828.7601 kcal/mol (2822.5839 without restraints) Performing minimization step: 3360. Total energy = 2828.0880 kcal/mol (2821.9115 without restraints) Performing minimization step: 3361. Total energy = 2827.4161 kcal/mol (2821.2394 without restraints) Performing minimization step: 3362. Total energy = 2826.7448 kcal/mol (2820.5679 without restraints) Performing minimization step: 3363. Total energy = 2826.0742 kcal/mol (2819.8971 without restraints) Performing minimization step: 3364. Total energy = 2825.4042 kcal/mol (2819.2269 without restraints) Performing minimization step: 3365. Total energy = 2824.7346 kcal/mol (2818.5573 without restraints) Performing minimization step: 3366. Total energy = 2824.0658 kcal/mol (2817.8883 without restraints) Performing minimization step: 3367. Total energy = 2823.3974 kcal/mol (2817.2194 without restraints) Performing minimization step: 3368. Total energy = 2822.7292 kcal/mol (2816.5511 without restraints) Performing minimization step: 3369. Total energy = 2822.0615 kcal/mol (2815.8833 without restraints) Performing minimization step: 3370. Total energy = 2821.3947 kcal/mol (2815.2163 without restraints) Performing minimization step: 3371. Total energy = 2820.7285 kcal/mol (2814.5500 without restraints) Performing minimization step: 3372. Total energy = 2820.0628 kcal/mol (2813.8839 without restraints) Performing minimization step: 3373. Total energy = 2819.3976 kcal/mol (2813.2186 without restraints) Performing minimization step: 3374. Total energy = 2818.7330 kcal/mol (2812.5538 without restraints) Performing minimization step: 3375. Total energy = 2818.0690 kcal/mol (2811.8895 without restraints) Performing minimization step: 3376. Total energy = 2817.4051 kcal/mol (2811.2253 without restraints) Performing minimization step: 3377. Total energy = 2816.7424 kcal/mol (2810.5625 without restraints) Performing minimization step: 3378. Total energy = 2816.0796 kcal/mol (2809.8996 without restraints) Performing minimization step: 3379. Total energy = 2815.4179 kcal/mol (2809.2376 without restraints) Performing minimization step: 3380. Total energy = 2814.7564 kcal/mol (2808.5760 without restraints) Performing minimization step: 3381. Total energy = 2814.0954 kcal/mol (2807.9147 without restraints) Performing minimization step: 3382. Total energy = 2813.4349 kcal/mol (2807.2540 without restraints) Performing minimization step: 3383. Total energy = 2812.7754 kcal/mol (2806.5943 without restraints) Performing minimization step: 3384. Total energy = 2812.1161 kcal/mol (2805.9349 without restraints) Performing minimization step: 3385. Total energy = 2811.4571 kcal/mol (2805.2756 without restraints) Performing minimization step: 3386. Total energy = 2810.7988 kcal/mol (2804.6171 without restraints) Performing minimization step: 3387. Total energy = 2810.1407 kcal/mol (2803.9588 without restraints) Performing minimization step: 3388. Total energy = 2809.4837 kcal/mol (2803.3016 without restraints) Performing minimization step: 3389. Total energy = 2808.8268 kcal/mol (2802.6445 without restraints) Performing minimization step: 3390. Total energy = 2808.1703 kcal/mol (2801.9878 without restraints) Performing minimization step: 3391. Total energy = 2807.5144 kcal/mol (2801.3317 without restraints) Performing minimization step: 3392. Total energy = 2806.8594 kcal/mol (2800.6765 without restraints) Performing minimization step: 3393. Total energy = 2806.2046 kcal/mol (2800.0216 without restraints) Performing minimization step: 3394. Total energy = 2805.5504 kcal/mol (2799.3670 without restraints) Performing minimization step: 3395. Total energy = 2804.8966 kcal/mol (2798.7131 without restraints) Performing minimization step: 3396. Total energy = 2804.2436 kcal/mol (2798.0599 without restraints) Performing minimization step: 3397. Total energy = 2803.5908 kcal/mol (2797.4068 without restraints) Performing minimization step: 3398. Total energy = 2802.9387 kcal/mol (2796.7547 without restraints) Performing minimization step: 3399. Total energy = 2802.2873 kcal/mol (2796.1031 without restraints) Performing minimization step: 3400. Total energy = 2801.6367 kcal/mol (2795.4521 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 2800.9865 kcal/mol (2794.8017 without restraints) Performing minimization step: 3402. Total energy = 2800.3366 kcal/mol (2794.1516 without restraints) Performing minimization step: 3403. Total energy = 2799.6871 kcal/mol (2793.5019 without restraints) Performing minimization step: 3404. Total energy = 2799.0381 kcal/mol (2792.8527 without restraints) Performing minimization step: 3405. Total energy = 2798.3897 kcal/mol (2792.2040 without restraints) Performing minimization step: 3406. Total energy = 2797.7417 kcal/mol (2791.5558 without restraints) Performing minimization step: 3407. Total energy = 2797.0943 kcal/mol (2790.9083 without restraints) Performing minimization step: 3408. Total energy = 2796.4475 kcal/mol (2790.2615 without restraints) Performing minimization step: 3409. Total energy = 2795.8015 kcal/mol (2789.6153 without restraints) Performing minimization step: 3410. Total energy = 2795.1561 kcal/mol (2788.9694 without restraints) Performing minimization step: 3411. Total energy = 2794.5106 kcal/mol (2788.3237 without restraints) Performing minimization step: 3412. Total energy = 2793.8657 kcal/mol (2787.6786 without restraints) Performing minimization step: 3413. Total energy = 2793.2213 kcal/mol (2787.0340 without restraints) Performing minimization step: 3414. Total energy = 2792.5781 kcal/mol (2786.3906 without restraints) Performing minimization step: 3415. Total energy = 2791.9345 kcal/mol (2785.7468 without restraints) Performing minimization step: 3416. Total energy = 2791.2919 kcal/mol (2785.1041 without restraints) Performing minimization step: 3417. Total energy = 2790.6496 kcal/mol (2784.4615 without restraints) Performing minimization step: 3418. Total energy = 2790.0077 kcal/mol (2783.8194 without restraints) Performing minimization step: 3419. Total energy = 2789.3664 kcal/mol (2783.1778 without restraints) Performing minimization step: 3420. Total energy = 2788.7257 kcal/mol (2782.5369 without restraints) Performing minimization step: 3421. Total energy = 2788.0855 kcal/mol (2781.8965 without restraints) Performing minimization step: 3422. Total energy = 2787.4457 kcal/mol (2781.2565 without restraints) Performing minimization step: 3423. Total energy = 2786.8064 kcal/mol (2780.6169 without restraints) Performing minimization step: 3424. Total energy = 2786.1677 kcal/mol (2779.9781 without restraints) Performing minimization step: 3425. Total energy = 2785.5294 kcal/mol (2779.3396 without restraints) Performing minimization step: 3426. Total energy = 2784.8917 kcal/mol (2778.7017 without restraints) Performing minimization step: 3427. Total energy = 2784.2546 kcal/mol (2778.0644 without restraints) Performing minimization step: 3428. Total energy = 2783.6183 kcal/mol (2777.4279 without restraints) Performing minimization step: 3429. Total energy = 2782.9821 kcal/mol (2776.7914 without restraints) Performing minimization step: 3430. Total energy = 2782.3463 kcal/mol (2776.1553 without restraints) Performing minimization step: 3431. Total energy = 2781.7110 kcal/mol (2775.5199 without restraints) Performing minimization step: 3432. Total energy = 2781.0761 kcal/mol (2774.8848 without restraints) Performing minimization step: 3433. Total energy = 2780.4419 kcal/mol (2774.2504 without restraints) Performing minimization step: 3434. Total energy = 2779.8080 kcal/mol (2773.6163 without restraints) Performing minimization step: 3435. Total energy = 2779.1746 kcal/mol (2772.9827 without restraints) Performing minimization step: 3436. Total energy = 2778.5423 kcal/mol (2772.3501 without restraints) Performing minimization step: 3437. Total energy = 2777.9101 kcal/mol (2771.7177 without restraints) Performing minimization step: 3438. Total energy = 2777.2781 kcal/mol (2771.0855 without restraints) Performing minimization step: 3439. Total energy = 2776.6469 kcal/mol (2770.4541 without restraints) Performing minimization step: 3440. Total energy = 2776.0164 kcal/mol (2769.8233 without restraints) Performing minimization step: 3441. Total energy = 2775.3859 kcal/mol (2769.1926 without restraints) Performing minimization step: 3442. Total energy = 2774.7563 kcal/mol (2768.5629 without restraints) Performing minimization step: 3443. Total energy = 2774.1271 kcal/mol (2767.9334 without restraints) Performing minimization step: 3444. Total energy = 2773.4984 kcal/mol (2767.3046 without restraints) Performing minimization step: 3445. Total energy = 2772.8700 kcal/mol (2766.6758 without restraints) Performing minimization step: 3446. Total energy = 2772.2419 kcal/mol (2766.0475 without restraints) Performing minimization step: 3447. Total energy = 2771.6143 kcal/mol (2765.4197 without restraints) Performing minimization step: 3448. Total energy = 2770.9872 kcal/mol (2764.7924 without restraints) Performing minimization step: 3449. Total energy = 2770.3612 kcal/mol (2764.1661 without restraints) Performing minimization step: 3450. Total energy = 2769.7356 kcal/mol (2763.5403 without restraints) Performing minimization step: 3451. Total energy = 2769.1100 kcal/mol (2762.9145 without restraints) Performing minimization step: 3452. Total energy = 2768.4848 kcal/mol (2762.2891 without restraints) Performing minimization step: 3453. Total energy = 2767.8602 kcal/mol (2761.6642 without restraints) Performing minimization step: 3454. Total energy = 2767.2360 kcal/mol (2761.0398 without restraints) Performing minimization step: 3455. Total energy = 2766.6123 kcal/mol (2760.4161 without restraints) Performing minimization step: 3456. Total energy = 2765.9892 kcal/mol (2759.7926 without restraints) Performing minimization step: 3457. Total energy = 2765.3666 kcal/mol (2759.1698 without restraints) Performing minimization step: 3458. Total energy = 2764.7443 kcal/mol (2758.5473 without restraints) Performing minimization step: 3459. Total energy = 2764.1228 kcal/mol (2757.9256 without restraints) Performing minimization step: 3460. Total energy = 2763.5015 kcal/mol (2757.3040 without restraints) Performing minimization step: 3461. Total energy = 2762.8807 kcal/mol (2756.6831 without restraints) Performing minimization step: 3462. Total energy = 2762.2604 kcal/mol (2756.0625 without restraints) Performing minimization step: 3463. Total energy = 2761.6405 kcal/mol (2755.4424 without restraints) Performing minimization step: 3464. Total energy = 2761.0209 kcal/mol (2754.8226 without restraints) Performing minimization step: 3465. Total energy = 2760.4022 kcal/mol (2754.2036 without restraints) Performing minimization step: 3466. Total energy = 2759.7836 kcal/mol (2753.5848 without restraints) Performing minimization step: 3467. Total energy = 2759.1655 kcal/mol (2752.9664 without restraints) Performing minimization step: 3468. Total energy = 2758.5479 kcal/mol (2752.3486 without restraints) Performing minimization step: 3469. Total energy = 2757.9307 kcal/mol (2751.7312 without restraints) Performing minimization step: 3470. Total energy = 2757.3141 kcal/mol (2751.1144 without restraints) Performing minimization step: 3471. Total energy = 2756.6979 kcal/mol (2750.4979 without restraints) Performing minimization step: 3472. Total energy = 2756.0823 kcal/mol (2749.8822 without restraints) Performing minimization step: 3473. Total energy = 2755.4669 kcal/mol (2749.2665 without restraints) Performing minimization step: 3474. Total energy = 2754.8522 kcal/mol (2748.6515 without restraints) Performing minimization step: 3475. Total energy = 2754.2380 kcal/mol (2748.0372 without restraints) Performing minimization step: 3476. Total energy = 2753.6242 kcal/mol (2747.4233 without restraints) Performing minimization step: 3477. Total energy = 2753.0109 kcal/mol (2746.8096 without restraints) Performing minimization step: 3478. Total energy = 2752.3981 kcal/mol (2746.1966 without restraints) Performing minimization step: 3479. Total energy = 2751.7860 kcal/mol (2745.5842 without restraints) Performing minimization step: 3480. Total energy = 2751.1740 kcal/mol (2744.9720 without restraints) Performing minimization step: 3481. Total energy = 2750.5626 kcal/mol (2744.3604 without restraints) Performing minimization step: 3482. Total energy = 2749.9520 kcal/mol (2743.7496 without restraints) Performing minimization step: 3483. Total energy = 2749.3414 kcal/mol (2743.1387 without restraints) Performing minimization step: 3484. Total energy = 2748.7314 kcal/mol (2742.5286 without restraints) Performing minimization step: 3485. Total energy = 2748.1220 kcal/mol (2741.9188 without restraints) Performing minimization step: 3486. Total energy = 2747.5126 kcal/mol (2741.3093 without restraints) Performing minimization step: 3487. Total energy = 2746.9040 kcal/mol (2740.7004 without restraints) Performing minimization step: 3488. Total energy = 2746.2955 kcal/mol (2740.0917 without restraints) Performing minimization step: 3489. Total energy = 2745.6878 kcal/mol (2739.4838 without restraints) Performing minimization step: 3490. Total energy = 2745.0802 kcal/mol (2738.8760 without restraints) Performing minimization step: 3491. Total energy = 2744.4735 kcal/mol (2738.2690 without restraints) Performing minimization step: 3492. Total energy = 2743.8671 kcal/mol (2737.6624 without restraints) Performing minimization step: 3493. Total energy = 2743.2616 kcal/mol (2737.0566 without restraints) Performing minimization step: 3494. Total energy = 2742.6558 kcal/mol (2736.4506 without restraints) Performing minimization step: 3495. Total energy = 2742.0512 kcal/mol (2735.8458 without restraints) Performing minimization step: 3496. Total energy = 2741.4466 kcal/mol (2735.2409 without restraints) Performing minimization step: 3497. Total energy = 2740.8424 kcal/mol (2734.6365 without restraints) Performing minimization step: 3498. Total energy = 2740.2385 kcal/mol (2734.0323 without restraints) Performing minimization step: 3499. Total energy = 2739.6351 kcal/mol (2733.4287 without restraints) Performing minimization step: 3500. Total energy = 2739.0325 kcal/mol (2732.8258 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 2738.4298 kcal/mol (2732.2229 without restraints) Performing minimization step: 3502. Total energy = 2737.8277 kcal/mol (2731.6204 without restraints) Performing minimization step: 3503. Total energy = 2737.2260 kcal/mol (2731.0186 without restraints) Performing minimization step: 3504. Total energy = 2736.6248 kcal/mol (2730.4173 without restraints) Performing minimization step: 3505. Total energy = 2736.0241 kcal/mol (2729.8163 without restraints) Performing minimization step: 3506. Total energy = 2735.4237 kcal/mol (2729.2156 without restraints) Performing minimization step: 3507. Total energy = 2734.8236 kcal/mol (2728.6152 without restraints) Performing minimization step: 3508. Total energy = 2734.2243 kcal/mol (2728.0158 without restraints) Performing minimization step: 3509. Total energy = 2733.6256 kcal/mol (2727.4171 without restraints) Performing minimization step: 3510. Total energy = 2733.0276 kcal/mol (2726.8186 without restraints) Performing minimization step: 3511. Total energy = 2732.4293 kcal/mol (2726.2201 without restraints) Performing minimization step: 3512. Total energy = 2731.8319 kcal/mol (2725.6224 without restraints) Performing minimization step: 3513. Total energy = 2731.2348 kcal/mol (2725.0251 without restraints) Performing minimization step: 3514. Total energy = 2730.6380 kcal/mol (2724.4281 without restraints) Performing minimization step: 3515. Total energy = 2730.0417 kcal/mol (2723.8315 without restraints) Performing minimization step: 3516. Total energy = 2729.4457 kcal/mol (2723.2353 without restraints) Performing minimization step: 3517. Total energy = 2728.8500 kcal/mol (2722.6394 without restraints) Performing minimization step: 3518. Total energy = 2728.2548 kcal/mol (2722.0439 without restraints) Performing minimization step: 3519. Total energy = 2727.6602 kcal/mol (2721.4491 without restraints) Performing minimization step: 3520. Total energy = 2727.0659 kcal/mol (2720.8545 without restraints) Performing minimization step: 3521. Total energy = 2726.4724 kcal/mol (2720.2608 without restraints) Performing minimization step: 3522. Total energy = 2725.8789 kcal/mol (2719.6670 without restraints) Performing minimization step: 3523. Total energy = 2725.2857 kcal/mol (2719.0736 without restraints) Performing minimization step: 3524. Total energy = 2724.6930 kcal/mol (2718.4807 without restraints) Performing minimization step: 3525. Total energy = 2724.1007 kcal/mol (2717.8881 without restraints) Performing minimization step: 3526. Total energy = 2723.5088 kcal/mol (2717.2960 without restraints) Performing minimization step: 3527. Total energy = 2722.9176 kcal/mol (2716.7046 without restraints) Performing minimization step: 3528. Total energy = 2722.3271 kcal/mol (2716.1139 without restraints) Performing minimization step: 3529. Total energy = 2721.7369 kcal/mol (2715.5233 without restraints) Performing minimization step: 3530. Total energy = 2721.1467 kcal/mol (2714.9329 without restraints) Performing minimization step: 3531. Total energy = 2720.5571 kcal/mol (2714.3431 without restraints) Performing minimization step: 3532. Total energy = 2719.9674 kcal/mol (2713.7531 without restraints) Performing minimization step: 3533. Total energy = 2719.3782 kcal/mol (2713.1637 without restraints) Performing minimization step: 3534. Total energy = 2718.7899 kcal/mol (2712.5751 without restraints) Performing minimization step: 3535. Total energy = 2718.2019 kcal/mol (2711.9870 without restraints) Performing minimization step: 3536. Total energy = 2717.6145 kcal/mol (2711.3993 without restraints) Performing minimization step: 3537. Total energy = 2717.0273 kcal/mol (2710.8118 without restraints) Performing minimization step: 3538. Total energy = 2716.4403 kcal/mol (2710.2247 without restraints) Performing minimization step: 3539. Total energy = 2715.8540 kcal/mol (2709.6380 without restraints) Performing minimization step: 3540. Total energy = 2715.2679 kcal/mol (2709.0517 without restraints) Performing minimization step: 3541. Total energy = 2714.6826 kcal/mol (2708.4662 without restraints) Performing minimization step: 3542. Total energy = 2714.0972 kcal/mol (2707.8805 without restraints) Performing minimization step: 3543. Total energy = 2713.5124 kcal/mol (2707.2954 without restraints) Performing minimization step: 3544. Total energy = 2712.9280 kcal/mol (2706.7108 without restraints) Performing minimization step: 3545. Total energy = 2712.3442 kcal/mol (2706.1267 without restraints) Performing minimization step: 3546. Total energy = 2711.7606 kcal/mol (2705.5429 without restraints) Performing minimization step: 3547. Total energy = 2711.1775 kcal/mol (2704.9595 without restraints) Performing minimization step: 3548. Total energy = 2710.5949 kcal/mol (2704.3768 without restraints) Performing minimization step: 3549. Total energy = 2710.0127 kcal/mol (2703.7943 without restraints) Performing minimization step: 3550. Total energy = 2709.4310 kcal/mol (2703.2123 without restraints) Performing minimization step: 3551. Total energy = 2708.8496 kcal/mol (2702.6307 without restraints) Performing minimization step: 3552. Total energy = 2708.2686 kcal/mol (2702.0494 without restraints) Performing minimization step: 3553. Total energy = 2707.6881 kcal/mol (2701.4687 without restraints) Performing minimization step: 3554. Total energy = 2707.1078 kcal/mol (2700.8882 without restraints) Performing minimization step: 3555. Total energy = 2706.5281 kcal/mol (2700.3082 without restraints) Performing minimization step: 3556. Total energy = 2705.9488 kcal/mol (2699.7286 without restraints) Performing minimization step: 3557. Total energy = 2705.3696 kcal/mol (2699.1491 without restraints) Performing minimization step: 3558. Total energy = 2704.7906 kcal/mol (2698.5699 without restraints) Performing minimization step: 3559. Total energy = 2704.2122 kcal/mol (2697.9912 without restraints) Performing minimization step: 3560. Total energy = 2703.6342 kcal/mol (2697.4130 without restraints) Performing minimization step: 3561. Total energy = 2703.0566 kcal/mol (2696.8351 without restraints) Performing minimization step: 3562. Total energy = 2702.4798 kcal/mol (2696.2581 without restraints) Performing minimization step: 3563. Total energy = 2701.9032 kcal/mol (2695.6812 without restraints) Performing minimization step: 3564. Total energy = 2701.3269 kcal/mol (2695.1048 without restraints) Performing minimization step: 3565. Total energy = 2700.7511 kcal/mol (2694.5287 without restraints) Performing minimization step: 3566. Total energy = 2700.1757 kcal/mol (2693.9530 without restraints) Performing minimization step: 3567. Total energy = 2699.6008 kcal/mol (2693.3778 without restraints) Performing minimization step: 3568. Total energy = 2699.0259 kcal/mol (2692.8027 without restraints) Performing minimization step: 3569. Total energy = 2698.4514 kcal/mol (2692.2280 without restraints) Performing minimization step: 3570. Total energy = 2697.8776 kcal/mol (2691.6539 without restraints) Performing minimization step: 3571. Total energy = 2697.3039 kcal/mol (2691.0799 without restraints) Performing minimization step: 3572. Total energy = 2696.7308 kcal/mol (2690.5066 without restraints) Performing minimization step: 3573. Total energy = 2696.1582 kcal/mol (2689.9338 without restraints) Performing minimization step: 3574. Total energy = 2695.5857 kcal/mol (2689.3610 without restraints) Performing minimization step: 3575. Total energy = 2695.0136 kcal/mol (2688.7886 without restraints) Performing minimization step: 3576. Total energy = 2694.4422 kcal/mol (2688.2170 without restraints) Performing minimization step: 3577. Total energy = 2693.8712 kcal/mol (2687.6457 without restraints) Performing minimization step: 3578. Total energy = 2693.3005 kcal/mol (2687.0749 without restraints) Performing minimization step: 3579. Total energy = 2692.7304 kcal/mol (2686.5044 without restraints) Performing minimization step: 3580. Total energy = 2692.1603 kcal/mol (2685.9341 without restraints) Performing minimization step: 3581. Total energy = 2691.5908 kcal/mol (2685.3644 without restraints) Performing minimization step: 3582. Total energy = 2691.0215 kcal/mol (2684.7948 without restraints) Performing minimization step: 3583. Total energy = 2690.4526 kcal/mol (2684.2256 without restraints) Performing minimization step: 3584. Total energy = 2689.8844 kcal/mol (2683.6572 without restraints) Performing minimization step: 3585. Total energy = 2689.3162 kcal/mol (2683.0886 without restraints) Performing minimization step: 3586. Total energy = 2688.7484 kcal/mol (2682.5206 without restraints) Performing minimization step: 3587. Total energy = 2688.1809 kcal/mol (2681.9529 without restraints) Performing minimization step: 3588. Total energy = 2687.6132 kcal/mol (2681.3848 without restraints) Performing minimization step: 3589. Total energy = 2687.0463 kcal/mol (2680.8177 without restraints) Performing minimization step: 3590. Total energy = 2686.4800 kcal/mol (2680.2514 without restraints) Performing minimization step: 3591. Total energy = 2685.9139 kcal/mol (2679.6848 without restraints) Performing minimization step: 3592. Total energy = 2685.3483 kcal/mol (2679.1189 without restraints) Performing minimization step: 3593. Total energy = 2684.7829 kcal/mol (2678.5533 without restraints) Performing minimization step: 3594. Total energy = 2684.2182 kcal/mol (2677.9882 without restraints) Performing minimization step: 3595. Total energy = 2683.6535 kcal/mol (2677.4233 without restraints) Performing minimization step: 3596. Total energy = 2683.0892 kcal/mol (2676.8588 without restraints) Performing minimization step: 3597. Total energy = 2682.5254 kcal/mol (2676.2947 without restraints) Performing minimization step: 3598. Total energy = 2681.9619 kcal/mol (2675.7311 without restraints) Performing minimization step: 3599. Total energy = 2681.3986 kcal/mol (2675.1674 without restraints) Performing minimization step: 3600. Total energy = 2680.8362 kcal/mol (2674.6049 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 2680.2738 kcal/mol (2674.0420 without restraints) Performing minimization step: 3602. Total energy = 2679.7120 kcal/mol (2673.4799 without restraints) Performing minimization step: 3603. Total energy = 2679.1501 kcal/mol (2672.9178 without restraints) Performing minimization step: 3604. Total energy = 2678.5888 kcal/mol (2672.3562 without restraints) Performing minimization step: 3605. Total energy = 2678.0279 kcal/mol (2671.7952 without restraints) Performing minimization step: 3606. Total energy = 2677.4678 kcal/mol (2671.2348 without restraints) Performing minimization step: 3607. Total energy = 2676.9084 kcal/mol (2670.6753 without restraints) Performing minimization step: 3608. Total energy = 2676.3489 kcal/mol (2670.1153 without restraints) Performing minimization step: 3609. Total energy = 2675.7895 kcal/mol (2669.5556 without restraints) Performing minimization step: 3610. Total energy = 2675.2303 kcal/mol (2668.9962 without restraints) Performing minimization step: 3611. Total energy = 2674.6716 kcal/mol (2668.4372 without restraints) Performing minimization step: 3612. Total energy = 2674.1134 kcal/mol (2667.8787 without restraints) Performing minimization step: 3613. Total energy = 2673.5554 kcal/mol (2667.3205 without restraints) Performing minimization step: 3614. Total energy = 2672.9981 kcal/mol (2666.7629 without restraints) Performing minimization step: 3615. Total energy = 2672.4407 kcal/mol (2666.2052 without restraints) Performing minimization step: 3616. Total energy = 2671.8836 kcal/mol (2665.6479 without restraints) Performing minimization step: 3617. Total energy = 2671.3273 kcal/mol (2665.0913 without restraints) Performing minimization step: 3618. Total energy = 2670.7710 kcal/mol (2664.5347 without restraints) Performing minimization step: 3619. Total energy = 2670.2149 kcal/mol (2663.9784 without restraints) Performing minimization step: 3620. Total energy = 2669.6595 kcal/mol (2663.4227 without restraints) Performing minimization step: 3621. Total energy = 2669.1045 kcal/mol (2662.8674 without restraints) Performing minimization step: 3622. Total energy = 2668.5497 kcal/mol (2662.3124 without restraints) Performing minimization step: 3623. Total energy = 2667.9951 kcal/mol (2661.7575 without restraints) Performing minimization step: 3624. Total energy = 2667.4411 kcal/mol (2661.2032 without restraints) Performing minimization step: 3625. Total energy = 2666.8873 kcal/mol (2660.6491 without restraints) Performing minimization step: 3626. Total energy = 2666.3340 kcal/mol (2660.0956 without restraints) Performing minimization step: 3627. Total energy = 2665.7811 kcal/mol (2659.5423 without restraints) Performing minimization step: 3628. Total energy = 2665.2284 kcal/mol (2658.9895 without restraints) Performing minimization step: 3629. Total energy = 2664.6756 kcal/mol (2658.4365 without restraints) Performing minimization step: 3630. Total energy = 2664.1240 kcal/mol (2657.8846 without restraints) Performing minimization step: 3631. Total energy = 2663.5723 kcal/mol (2657.3325 without restraints) Performing minimization step: 3632. Total energy = 2663.0210 kcal/mol (2656.7809 without restraints) Performing minimization step: 3633. Total energy = 2662.4707 kcal/mol (2656.2303 without restraints) Performing minimization step: 3634. Total energy = 2661.9200 kcal/mol (2655.6796 without restraints) Performing minimization step: 3635. Total energy = 2661.3693 kcal/mol (2655.1285 without restraints) Performing minimization step: 3636. Total energy = 2660.8193 kcal/mol (2654.5782 without restraints) Performing minimization step: 3637. Total energy = 2660.2693 kcal/mol (2654.0279 without restraints) Performing minimization step: 3638. Total energy = 2659.7198 kcal/mol (2653.4780 without restraints) Performing minimization step: 3639. Total energy = 2659.1704 kcal/mol (2652.9283 without restraints) Performing minimization step: 3640. Total energy = 2658.6219 kcal/mol (2652.3796 without restraints) Performing minimization step: 3641. Total energy = 2658.0735 kcal/mol (2651.8309 without restraints) Performing minimization step: 3642. Total energy = 2657.5255 kcal/mol (2651.2827 without restraints) Performing minimization step: 3643. Total energy = 2656.9774 kcal/mol (2650.7343 without restraints) Performing minimization step: 3644. Total energy = 2656.4299 kcal/mol (2650.1866 without restraints) Performing minimization step: 3645. Total energy = 2655.8832 kcal/mol (2649.6396 without restraints) Performing minimization step: 3646. Total energy = 2655.3366 kcal/mol (2649.0927 without restraints) Performing minimization step: 3647. Total energy = 2654.7905 kcal/mol (2648.5463 without restraints) Performing minimization step: 3648. Total energy = 2654.2445 kcal/mol (2648.0001 without restraints) Performing minimization step: 3649. Total energy = 2653.6987 kcal/mol (2647.4539 without restraints) Performing minimization step: 3650. Total energy = 2653.1532 kcal/mol (2646.9082 without restraints) Performing minimization step: 3651. Total energy = 2652.6080 kcal/mol (2646.3629 without restraints) Performing minimization step: 3652. Total energy = 2652.0636 kcal/mol (2645.8180 without restraints) Performing minimization step: 3653. Total energy = 2651.5192 kcal/mol (2645.2734 without restraints) Performing minimization step: 3654. Total energy = 2650.9751 kcal/mol (2644.7290 without restraints) Performing minimization step: 3655. Total energy = 2650.4315 kcal/mol (2644.1851 without restraints) Performing minimization step: 3656. Total energy = 2649.8883 kcal/mol (2643.6418 without restraints) Performing minimization step: 3657. Total energy = 2649.3457 kcal/mol (2643.0988 without restraints) Performing minimization step: 3658. Total energy = 2648.8028 kcal/mol (2642.5556 without restraints) Performing minimization step: 3659. Total energy = 2648.2602 kcal/mol (2642.0127 without restraints) Performing minimization step: 3660. Total energy = 2647.7179 kcal/mol (2641.4701 without restraints) Performing minimization step: 3661. Total energy = 2647.1759 kcal/mol (2640.9279 without restraints) Performing minimization step: 3662. Total energy = 2646.6347 kcal/mol (2640.3865 without restraints) Performing minimization step: 3663. Total energy = 2646.0939 kcal/mol (2639.8452 without restraints) Performing minimization step: 3664. Total energy = 2645.5529 kcal/mol (2639.3039 without restraints) Performing minimization step: 3665. Total energy = 2645.0118 kcal/mol (2638.7626 without restraints) Performing minimization step: 3666. Total energy = 2644.4716 kcal/mol (2638.2221 without restraints) Performing minimization step: 3667. Total energy = 2643.9321 kcal/mol (2637.6823 without restraints) Performing minimization step: 3668. Total energy = 2643.3926 kcal/mol (2637.1425 without restraints) Performing minimization step: 3669. Total energy = 2642.8532 kcal/mol (2636.6028 without restraints) Performing minimization step: 3670. Total energy = 2642.3141 kcal/mol (2636.0634 without restraints) Performing minimization step: 3671. Total energy = 2641.7752 kcal/mol (2635.5243 without restraints) Performing minimization step: 3672. Total energy = 2641.2371 kcal/mol (2634.9860 without restraints) Performing minimization step: 3673. Total energy = 2640.6990 kcal/mol (2634.4475 without restraints) Performing minimization step: 3674. Total energy = 2640.1612 kcal/mol (2633.9095 without restraints) Performing minimization step: 3675. Total energy = 2639.6237 kcal/mol (2633.3716 without restraints) Performing minimization step: 3676. Total energy = 2639.0869 kcal/mol (2632.8345 without restraints) Performing minimization step: 3677. Total energy = 2638.5503 kcal/mol (2632.2977 without restraints) Performing minimization step: 3678. Total energy = 2638.0138 kcal/mol (2631.7609 without restraints) Performing minimization step: 3679. Total energy = 2637.4776 kcal/mol (2631.2245 without restraints) Performing minimization step: 3680. Total energy = 2636.9416 kcal/mol (2630.6881 without restraints) Performing minimization step: 3681. Total energy = 2636.4062 kcal/mol (2630.1526 without restraints) Performing minimization step: 3682. Total energy = 2635.8709 kcal/mol (2629.6168 without restraints) Performing minimization step: 3683. Total energy = 2635.3359 kcal/mol (2629.0815 without restraints) Performing minimization step: 3684. Total energy = 2634.8011 kcal/mol (2628.5464 without restraints) Performing minimization step: 3685. Total energy = 2634.2665 kcal/mol (2628.0115 without restraints) Performing minimization step: 3686. Total energy = 2633.7322 kcal/mol (2627.4770 without restraints) Performing minimization step: 3687. Total energy = 2633.1984 kcal/mol (2626.9429 without restraints) Performing minimization step: 3688. Total energy = 2632.6654 kcal/mol (2626.4096 without restraints) Performing minimization step: 3689. Total energy = 2632.1323 kcal/mol (2625.8762 without restraints) Performing minimization step: 3690. Total energy = 2631.5993 kcal/mol (2625.3430 without restraints) Performing minimization step: 3691. Total energy = 2631.0671 kcal/mol (2624.8104 without restraints) Performing minimization step: 3692. Total energy = 2630.5347 kcal/mol (2624.2777 without restraints) Performing minimization step: 3693. Total energy = 2630.0027 kcal/mol (2623.7454 without restraints) Performing minimization step: 3694. Total energy = 2629.4708 kcal/mol (2623.2132 without restraints) Performing minimization step: 3695. Total energy = 2628.9394 kcal/mol (2622.6816 without restraints) Performing minimization step: 3696. Total energy = 2628.4081 kcal/mol (2622.1500 without restraints) Performing minimization step: 3697. Total energy = 2627.8771 kcal/mol (2621.6187 without restraints) Performing minimization step: 3698. Total energy = 2627.3463 kcal/mol (2621.0875 without restraints) Performing minimization step: 3699. Total energy = 2626.8160 kcal/mol (2620.5570 without restraints) Performing minimization step: 3700. Total energy = 2626.2857 kcal/mol (2620.0263 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 2625.7560 kcal/mol (2619.4965 without restraints) Performing minimization step: 3702. Total energy = 2625.2263 kcal/mol (2618.9664 without restraints) Performing minimization step: 3703. Total energy = 2624.6970 kcal/mol (2618.4368 without restraints) Performing minimization step: 3704. Total energy = 2624.1679 kcal/mol (2617.9073 without restraints) Performing minimization step: 3705. Total energy = 2623.6389 kcal/mol (2617.3781 without restraints) Performing minimization step: 3706. Total energy = 2623.1113 kcal/mol (2616.8502 without restraints) Performing minimization step: 3707. Total energy = 2622.5834 kcal/mol (2616.3223 without restraints) Performing minimization step: 3708. Total energy = 2622.0558 kcal/mol (2615.7941 without restraints) Performing minimization step: 3709. Total energy = 2621.5282 kcal/mol (2615.2662 without restraints) Performing minimization step: 3710. Total energy = 2621.0009 kcal/mol (2614.7386 without restraints) Performing minimization step: 3711. Total energy = 2620.4740 kcal/mol (2614.2115 without restraints) Performing minimization step: 3712. Total energy = 2619.9475 kcal/mol (2613.6846 without restraints) Performing minimization step: 3713. Total energy = 2619.4207 kcal/mol (2613.1575 without restraints) Performing minimization step: 3714. Total energy = 2618.8949 kcal/mol (2612.6314 without restraints) Performing minimization step: 3715. Total energy = 2618.3692 kcal/mol (2612.1054 without restraints) Performing minimization step: 3716. Total energy = 2617.8437 kcal/mol (2611.5797 without restraints) Performing minimization step: 3717. Total energy = 2617.3185 kcal/mol (2611.0541 without restraints) Performing minimization step: 3718. Total energy = 2616.7934 kcal/mol (2610.5287 without restraints) Performing minimization step: 3719. Total energy = 2616.2686 kcal/mol (2610.0036 without restraints) Performing minimization step: 3720. Total energy = 2615.7440 kcal/mol (2609.4787 without restraints) Performing minimization step: 3721. Total energy = 2615.2197 kcal/mol (2608.9542 without restraints) Performing minimization step: 3722. Total energy = 2614.6957 kcal/mol (2608.4299 without restraints) Performing minimization step: 3723. Total energy = 2614.1719 kcal/mol (2607.9057 without restraints) Performing minimization step: 3724. Total energy = 2613.6488 kcal/mol (2607.3824 without restraints) Performing minimization step: 3725. Total energy = 2613.1258 kcal/mol (2606.8591 without restraints) Performing minimization step: 3726. Total energy = 2612.6030 kcal/mol (2606.3359 without restraints) Performing minimization step: 3727. Total energy = 2612.0801 kcal/mol (2605.8127 without restraints) Performing minimization step: 3728. Total energy = 2611.5577 kcal/mol (2605.2901 without restraints) Performing minimization step: 3729. Total energy = 2611.0356 kcal/mol (2604.7677 without restraints) Performing minimization step: 3730. Total energy = 2610.5138 kcal/mol (2604.2455 without restraints) Performing minimization step: 3731. Total energy = 2609.9924 kcal/mol (2603.7238 without restraints) Performing minimization step: 3732. Total energy = 2609.4711 kcal/mol (2603.2022 without restraints) Performing minimization step: 3733. Total energy = 2608.9500 kcal/mol (2602.6809 without restraints) Performing minimization step: 3734. Total energy = 2608.4295 kcal/mol (2602.1600 without restraints) Performing minimization step: 3735. Total energy = 2607.9090 kcal/mol (2601.6392 without restraints) Performing minimization step: 3736. Total energy = 2607.3890 kcal/mol (2601.1190 without restraints) Performing minimization step: 3737. Total energy = 2606.8694 kcal/mol (2600.5990 without restraints) Performing minimization step: 3738. Total energy = 2606.3499 kcal/mol (2600.0791 without restraints) Performing minimization step: 3739. Total energy = 2605.8306 kcal/mol (2599.5596 without restraints) Performing minimization step: 3740. Total energy = 2605.3114 kcal/mol (2599.0400 without restraints) Performing minimization step: 3741. Total energy = 2604.7928 kcal/mol (2598.5212 without restraints) Performing minimization step: 3742. Total energy = 2604.2740 kcal/mol (2598.0019 without restraints) Performing minimization step: 3743. Total energy = 2603.7554 kcal/mol (2597.4833 without restraints) Performing minimization step: 3744. Total energy = 2603.2377 kcal/mol (2596.9651 without restraints) Performing minimization step: 3745. Total energy = 2602.7194 kcal/mol (2596.4466 without restraints) Performing minimization step: 3746. Total energy = 2602.2025 kcal/mol (2595.9294 without restraints) Performing minimization step: 3747. Total energy = 2601.6858 kcal/mol (2595.4123 without restraints) Performing minimization step: 3748. Total energy = 2601.1690 kcal/mol (2594.8953 without restraints) Performing minimization step: 3749. Total energy = 2600.6525 kcal/mol (2594.3785 without restraints) Performing minimization step: 3750. Total energy = 2600.1360 kcal/mol (2593.8615 without restraints) Performing minimization step: 3751. Total energy = 2599.6195 kcal/mol (2593.3448 without restraints) Performing minimization step: 3752. Total energy = 2599.1032 kcal/mol (2592.8280 without restraints) Performing minimization step: 3753. Total energy = 2598.5873 kcal/mol (2592.3120 without restraints) Performing minimization step: 3754. Total energy = 2598.0716 kcal/mol (2591.7960 without restraints) Performing minimization step: 3755. Total energy = 2597.5565 kcal/mol (2591.2805 without restraints) Performing minimization step: 3756. Total energy = 2597.0413 kcal/mol (2590.7650 without restraints) Performing minimization step: 3757. Total energy = 2596.5262 kcal/mol (2590.2496 without restraints) Performing minimization step: 3758. Total energy = 2596.0114 kcal/mol (2589.7345 without restraints) Performing minimization step: 3759. Total energy = 2595.4970 kcal/mol (2589.2199 without restraints) Performing minimization step: 3760. Total energy = 2594.9831 kcal/mol (2588.7056 without restraints) Performing minimization step: 3761. Total energy = 2594.4693 kcal/mol (2588.1915 without restraints) Performing minimization step: 3762. Total energy = 2593.9559 kcal/mol (2587.6779 without restraints) Performing minimization step: 3763. Total energy = 2593.4428 kcal/mol (2587.1643 without restraints) Performing minimization step: 3764. Total energy = 2592.9295 kcal/mol (2586.6507 without restraints) Performing minimization step: 3765. Total energy = 2592.4167 kcal/mol (2586.1376 without restraints) Performing minimization step: 3766. Total energy = 2591.9040 kcal/mol (2585.6246 without restraints) Performing minimization step: 3767. Total energy = 2591.3913 kcal/mol (2585.1116 without restraints) Performing minimization step: 3768. Total energy = 2590.8788 kcal/mol (2584.5988 without restraints) Performing minimization step: 3769. Total energy = 2590.3676 kcal/mol (2584.0873 without restraints) Performing minimization step: 3770. Total energy = 2589.8560 kcal/mol (2583.5754 without restraints) Performing minimization step: 3771. Total energy = 2589.3447 kcal/mol (2583.0637 without restraints) Performing minimization step: 3772. Total energy = 2588.8331 kcal/mol (2582.5518 without restraints) Performing minimization step: 3773. Total energy = 2588.3231 kcal/mol (2582.0415 without restraints) Performing minimization step: 3774. Total energy = 2587.8123 kcal/mol (2581.5304 without restraints) Performing minimization step: 3775. Total energy = 2587.3021 kcal/mol (2581.0199 without restraints) Performing minimization step: 3776. Total energy = 2586.7918 kcal/mol (2580.5092 without restraints) Performing minimization step: 3777. Total energy = 2586.2816 kcal/mol (2579.9987 without restraints) Performing minimization step: 3778. Total energy = 2585.7721 kcal/mol (2579.4890 without restraints) Performing minimization step: 3779. Total energy = 2585.2622 kcal/mol (2578.9788 without restraints) Performing minimization step: 3780. Total energy = 2584.7530 kcal/mol (2578.4693 without restraints) Performing minimization step: 3781. Total energy = 2584.2439 kcal/mol (2577.9599 without restraints) Performing minimization step: 3782. Total energy = 2583.7350 kcal/mol (2577.4505 without restraints) Performing minimization step: 3783. Total energy = 2583.2263 kcal/mol (2576.9417 without restraints) Performing minimization step: 3784. Total energy = 2582.7179 kcal/mol (2576.4328 without restraints) Performing minimization step: 3785. Total energy = 2582.2097 kcal/mol (2575.9243 without restraints) Performing minimization step: 3786. Total energy = 2581.7015 kcal/mol (2575.4157 without restraints) Performing minimization step: 3787. Total energy = 2581.1938 kcal/mol (2574.9079 without restraints) Performing minimization step: 3788. Total energy = 2580.6866 kcal/mol (2574.4003 without restraints) Performing minimization step: 3789. Total energy = 2580.1798 kcal/mol (2573.8931 without restraints) Performing minimization step: 3790. Total energy = 2579.6726 kcal/mol (2573.3856 without restraints) Performing minimization step: 3791. Total energy = 2579.1662 kcal/mol (2572.8788 without restraints) Performing minimization step: 3792. Total energy = 2578.6594 kcal/mol (2572.3717 without restraints) Performing minimization step: 3793. Total energy = 2578.1534 kcal/mol (2571.8654 without restraints) Performing minimization step: 3794. Total energy = 2577.6473 kcal/mol (2571.3590 without restraints) Performing minimization step: 3795. Total energy = 2577.1411 kcal/mol (2570.8524 without restraints) Performing minimization step: 3796. Total energy = 2576.6355 kcal/mol (2570.3466 without restraints) Performing minimization step: 3797. Total energy = 2576.1303 kcal/mol (2569.8410 without restraints) Performing minimization step: 3798. Total energy = 2575.6248 kcal/mol (2569.3352 without restraints) Performing minimization step: 3799. Total energy = 2575.1196 kcal/mol (2568.8297 without restraints) Performing minimization step: 3800. Total energy = 2574.6147 kcal/mol (2568.3246 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 2574.1102 kcal/mol (2567.8197 without restraints) Performing minimization step: 3802. Total energy = 2573.6056 kcal/mol (2567.3147 without restraints) Performing minimization step: 3803. Total energy = 2573.1014 kcal/mol (2566.8102 without restraints) Performing minimization step: 3804. Total energy = 2572.5973 kcal/mol (2566.3057 without restraints) Performing minimization step: 3805. Total energy = 2572.0935 kcal/mol (2565.8018 without restraints) Performing minimization step: 3806. Total energy = 2571.5899 kcal/mol (2565.2978 without restraints) Performing minimization step: 3807. Total energy = 2571.0867 kcal/mol (2564.7943 without restraints) Performing minimization step: 3808. Total energy = 2570.5840 kcal/mol (2564.2912 without restraints) Performing minimization step: 3809. Total energy = 2570.0811 kcal/mol (2563.7881 without restraints) Performing minimization step: 3810. Total energy = 2569.5787 kcal/mol (2563.2852 without restraints) Performing minimization step: 3811. Total energy = 2569.0760 kcal/mol (2562.7822 without restraints) Performing minimization step: 3812. Total energy = 2568.5736 kcal/mol (2562.2794 without restraints) Performing minimization step: 3813. Total energy = 2568.0717 kcal/mol (2561.7773 without restraints) Performing minimization step: 3814. Total energy = 2567.5699 kcal/mol (2561.2751 without restraints) Performing minimization step: 3815. Total energy = 2567.0683 kcal/mol (2560.7733 without restraints) Performing minimization step: 3816. Total energy = 2566.5670 kcal/mol (2560.2716 without restraints) Performing minimization step: 3817. Total energy = 2566.0656 kcal/mol (2559.7698 without restraints) Performing minimization step: 3818. Total energy = 2565.5647 kcal/mol (2559.2687 without restraints) Performing minimization step: 3819. Total energy = 2565.0641 kcal/mol (2558.7676 without restraints) Performing minimization step: 3820. Total energy = 2564.5633 kcal/mol (2558.2665 without restraints) Performing minimization step: 3821. Total energy = 2564.0630 kcal/mol (2557.7659 without restraints) Performing minimization step: 3822. Total energy = 2563.5627 kcal/mol (2557.2652 without restraints) Performing minimization step: 3823. Total energy = 2563.0625 kcal/mol (2556.7646 without restraints) Performing minimization step: 3824. Total energy = 2562.5625 kcal/mol (2556.2645 without restraints) Performing minimization step: 3825. Total energy = 2562.0628 kcal/mol (2555.7644 without restraints) Performing minimization step: 3826. Total energy = 2561.5634 kcal/mol (2555.2647 without restraints) Performing minimization step: 3827. Total energy = 2561.0643 kcal/mol (2554.7653 without restraints) Performing minimization step: 3828. Total energy = 2560.5654 kcal/mol (2554.2660 without restraints) Performing minimization step: 3829. Total energy = 2560.0664 kcal/mol (2553.7667 without restraints) Performing minimization step: 3830. Total energy = 2559.5679 kcal/mol (2553.2678 without restraints) Performing minimization step: 3831. Total energy = 2559.0696 kcal/mol (2552.7693 without restraints) Performing minimization step: 3832. Total energy = 2558.5713 kcal/mol (2552.2706 without restraints) Performing minimization step: 3833. Total energy = 2558.0732 kcal/mol (2551.7720 without restraints) Performing minimization step: 3834. Total energy = 2557.5755 kcal/mol (2551.2742 without restraints) Performing minimization step: 3835. Total energy = 2557.0785 kcal/mol (2550.7767 without restraints) Performing minimization step: 3836. Total energy = 2556.5810 kcal/mol (2550.2789 without restraints) Performing minimization step: 3837. Total energy = 2556.0841 kcal/mol (2549.7818 without restraints) Performing minimization step: 3838. Total energy = 2555.5871 kcal/mol (2549.2843 without restraints) Performing minimization step: 3839. Total energy = 2555.0903 kcal/mol (2548.7872 without restraints) Performing minimization step: 3840. Total energy = 2554.5939 kcal/mol (2548.2905 without restraints) Performing minimization step: 3841. Total energy = 2554.0972 kcal/mol (2547.7935 without restraints) Performing minimization step: 3842. Total energy = 2553.6010 kcal/mol (2547.2969 without restraints) Performing minimization step: 3843. Total energy = 2553.1050 kcal/mol (2546.8005 without restraints) Performing minimization step: 3844. Total energy = 2552.6089 kcal/mol (2546.3041 without restraints) Performing minimization step: 3845. Total energy = 2552.1129 kcal/mol (2545.8078 without restraints) Performing minimization step: 3846. Total energy = 2551.6174 kcal/mol (2545.3120 without restraints) Performing minimization step: 3847. Total energy = 2551.1220 kcal/mol (2544.8163 without restraints) Performing minimization step: 3848. Total energy = 2550.6273 kcal/mol (2544.3212 without restraints) Performing minimization step: 3849. Total energy = 2550.1322 kcal/mol (2543.8257 without restraints) Performing minimization step: 3850. Total energy = 2549.6373 kcal/mol (2543.3305 without restraints) Performing minimization step: 3851. Total energy = 2549.1425 kcal/mol (2542.8354 without restraints) Performing minimization step: 3852. Total energy = 2548.6479 kcal/mol (2542.3405 without restraints) Performing minimization step: 3853. Total energy = 2548.1539 kcal/mol (2541.8462 without restraints) Performing minimization step: 3854. Total energy = 2547.6596 kcal/mol (2541.3514 without restraints) Performing minimization step: 3855. Total energy = 2547.1657 kcal/mol (2540.8573 without restraints) Performing minimization step: 3856. Total energy = 2546.6724 kcal/mol (2540.3635 without restraints) Performing minimization step: 3857. Total energy = 2546.1786 kcal/mol (2539.8695 without restraints) Performing minimization step: 3858. Total energy = 2545.6851 kcal/mol (2539.3756 without restraints) Performing minimization step: 3859. Total energy = 2545.1919 kcal/mol (2538.8822 without restraints) Performing minimization step: 3860. Total energy = 2544.6989 kcal/mol (2538.3887 without restraints) Performing minimization step: 3861. Total energy = 2544.2059 kcal/mol (2537.8954 without restraints) Performing minimization step: 3862. Total energy = 2543.7133 kcal/mol (2537.4024 without restraints) Performing minimization step: 3863. Total energy = 2543.2207 kcal/mol (2536.9095 without restraints) Performing minimization step: 3864. Total energy = 2542.7283 kcal/mol (2536.4168 without restraints) Performing minimization step: 3865. Total energy = 2542.2360 kcal/mol (2535.9241 without restraints) Performing minimization step: 3866. Total energy = 2541.7441 kcal/mol (2535.4319 without restraints) Performing minimization step: 3867. Total energy = 2541.2525 kcal/mol (2534.9398 without restraints) Performing minimization step: 3868. Total energy = 2540.7608 kcal/mol (2534.4479 without restraints) Performing minimization step: 3869. Total energy = 2540.2691 kcal/mol (2533.9558 without restraints) Performing minimization step: 3870. Total energy = 2539.7778 kcal/mol (2533.4642 without restraints) Performing minimization step: 3871. Total energy = 2539.2867 kcal/mol (2532.9728 without restraints) Performing minimization step: 3872. Total energy = 2538.7959 kcal/mol (2532.4816 without restraints) Performing minimization step: 3873. Total energy = 2538.3058 kcal/mol (2531.9912 without restraints) Performing minimization step: 3874. Total energy = 2537.8154 kcal/mol (2531.5004 without restraints) Performing minimization step: 3875. Total energy = 2537.3250 kcal/mol (2531.0096 without restraints) Performing minimization step: 3876. Total energy = 2536.8347 kcal/mol (2530.5190 without restraints) Performing minimization step: 3877. Total energy = 2536.3448 kcal/mol (2530.0287 without restraints) Performing minimization step: 3878. Total energy = 2535.8550 kcal/mol (2529.5387 without restraints) Performing minimization step: 3879. Total energy = 2535.3653 kcal/mol (2529.0485 without restraints) Performing minimization step: 3880. Total energy = 2534.8760 kcal/mol (2528.5589 without restraints) Performing minimization step: 3881. Total energy = 2534.3865 kcal/mol (2528.0691 without restraints) Performing minimization step: 3882. Total energy = 2533.8976 kcal/mol (2527.5801 without restraints) Performing minimization step: 3883. Total energy = 2533.4087 kcal/mol (2527.0907 without restraints) Performing minimization step: 3884. Total energy = 2532.9201 kcal/mol (2526.6017 without restraints) Performing minimization step: 3885. Total energy = 2532.4316 kcal/mol (2526.1128 without restraints) Performing minimization step: 3886. Total energy = 2531.9432 kcal/mol (2525.6240 without restraints) Performing minimization step: 3887. Total energy = 2531.4547 kcal/mol (2525.1353 without restraints) Performing minimization step: 3888. Total energy = 2530.9665 kcal/mol (2524.6467 without restraints) Performing minimization step: 3889. Total energy = 2530.4785 kcal/mol (2524.1584 without restraints) Performing minimization step: 3890. Total energy = 2529.9909 kcal/mol (2523.6704 without restraints) Performing minimization step: 3891. Total energy = 2529.5031 kcal/mol (2523.1823 without restraints) Performing minimization step: 3892. Total energy = 2529.0154 kcal/mol (2522.6941 without restraints) Performing minimization step: 3893. Total energy = 2528.5286 kcal/mol (2522.2070 without restraints) Performing minimization step: 3894. Total energy = 2528.0418 kcal/mol (2521.7198 without restraints) Performing minimization step: 3895. Total energy = 2527.5547 kcal/mol (2521.2324 without restraints) Performing minimization step: 3896. Total energy = 2527.0680 kcal/mol (2520.7454 without restraints) Performing minimization step: 3897. Total energy = 2526.5812 kcal/mol (2520.2583 without restraints) Performing minimization step: 3898. Total energy = 2526.0948 kcal/mol (2519.7716 without restraints) Performing minimization step: 3899. Total energy = 2525.6089 kcal/mol (2519.2853 without restraints) Performing minimization step: 3900. Total energy = 2525.1232 kcal/mol (2518.7992 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 2524.6374 kcal/mol (2518.3130 without restraints) Performing minimization step: 3902. Total energy = 2524.1514 kcal/mol (2517.8267 without restraints) Performing minimization step: 3903. Total energy = 2523.6659 kcal/mol (2517.3409 without restraints) Performing minimization step: 3904. Total energy = 2523.1805 kcal/mol (2516.8551 without restraints) Performing minimization step: 3905. Total energy = 2522.6953 kcal/mol (2516.3695 without restraints) Performing minimization step: 3906. Total energy = 2522.2100 kcal/mol (2515.8839 without restraints) Performing minimization step: 3907. Total energy = 2521.7249 kcal/mol (2515.3984 without restraints) Performing minimization step: 3908. Total energy = 2521.2400 kcal/mol (2514.9131 without restraints) Performing minimization step: 3909. Total energy = 2520.7552 kcal/mol (2514.4280 without restraints) Performing minimization step: 3910. Total energy = 2520.2707 kcal/mol (2513.9432 without restraints) Performing minimization step: 3911. Total energy = 2519.7868 kcal/mol (2513.4590 without restraints) Performing minimization step: 3912. Total energy = 2519.3034 kcal/mol (2512.9751 without restraints) Performing minimization step: 3913. Total energy = 2518.8191 kcal/mol (2512.4905 without restraints) Performing minimization step: 3914. Total energy = 2518.3351 kcal/mol (2512.0061 without restraints) Performing minimization step: 3915. Total energy = 2517.8514 kcal/mol (2511.5222 without restraints) Performing minimization step: 3916. Total energy = 2517.3680 kcal/mol (2511.0384 without restraints) Performing minimization step: 3917. Total energy = 2516.8847 kcal/mol (2510.5547 without restraints) Performing minimization step: 3918. Total energy = 2516.4018 kcal/mol (2510.0714 without restraints) Performing minimization step: 3919. Total energy = 2515.9183 kcal/mol (2509.5876 without restraints) Performing minimization step: 3920. Total energy = 2515.4349 kcal/mol (2509.1038 without restraints) Performing minimization step: 3921. Total energy = 2514.9524 kcal/mol (2508.6210 without restraints) Performing minimization step: 3922. Total energy = 2514.4697 kcal/mol (2508.1379 without restraints) Performing minimization step: 3923. Total energy = 2513.9871 kcal/mol (2507.6550 without restraints) Performing minimization step: 3924. Total energy = 2513.5049 kcal/mol (2507.1724 without restraints) Performing minimization step: 3925. Total energy = 2513.0224 kcal/mol (2506.6895 without restraints) Performing minimization step: 3926. Total energy = 2512.5406 kcal/mol (2506.2074 without restraints) Performing minimization step: 3927. Total energy = 2512.0587 kcal/mol (2505.7251 without restraints) Performing minimization step: 3928. Total energy = 2511.5768 kcal/mol (2505.2428 without restraints) Performing minimization step: 3929. Total energy = 2511.0951 kcal/mol (2504.7608 without restraints) Performing minimization step: 3930. Total energy = 2510.6140 kcal/mol (2504.2793 without restraints) Performing minimization step: 3931. Total energy = 2510.1326 kcal/mol (2503.7976 without restraints) Performing minimization step: 3932. Total energy = 2509.6515 kcal/mol (2503.3161 without restraints) Performing minimization step: 3933. Total energy = 2509.1704 kcal/mol (2502.8347 without restraints) Performing minimization step: 3934. Total energy = 2508.6896 kcal/mol (2502.3537 without restraints) Performing minimization step: 3935. Total energy = 2508.2091 kcal/mol (2501.8727 without restraints) Performing minimization step: 3936. Total energy = 2507.7288 kcal/mol (2501.3922 without restraints) Performing minimization step: 3937. Total energy = 2507.2485 kcal/mol (2500.9113 without restraints) Performing minimization step: 3938. Total energy = 2506.7680 kcal/mol (2500.4305 without restraints) Performing minimization step: 3939. Total energy = 2506.2881 kcal/mol (2499.9502 without restraints) Performing minimization step: 3940. Total energy = 2505.8081 kcal/mol (2499.4699 without restraints) Performing minimization step: 3941. Total energy = 2505.3282 kcal/mol (2498.9896 without restraints) Performing minimization step: 3942. Total energy = 2504.8485 kcal/mol (2498.5096 without restraints) Performing minimization step: 3943. Total energy = 2504.3690 kcal/mol (2498.0297 without restraints) Performing minimization step: 3944. Total energy = 2503.8897 kcal/mol (2497.5502 without restraints) Performing minimization step: 3945. Total energy = 2503.4107 kcal/mol (2497.0707 without restraints) Performing minimization step: 3946. Total energy = 2502.9318 kcal/mol (2496.5915 without restraints) Performing minimization step: 3947. Total energy = 2502.4529 kcal/mol (2496.1121 without restraints) Performing minimization step: 3948. Total energy = 2501.9744 kcal/mol (2495.6333 without restraints) Performing minimization step: 3949. Total energy = 2501.4959 kcal/mol (2495.1544 without restraints) Performing minimization step: 3950. Total energy = 2501.0175 kcal/mol (2494.6757 without restraints) Performing minimization step: 3951. Total energy = 2500.5391 kcal/mol (2494.1969 without restraints) Performing minimization step: 3952. Total energy = 2500.0608 kcal/mol (2493.7183 without restraints) Performing minimization step: 3953. Total energy = 2499.5827 kcal/mol (2493.2398 without restraints) Performing minimization step: 3954. Total energy = 2499.1048 kcal/mol (2492.7615 without restraints) Performing minimization step: 3955. Total energy = 2498.6276 kcal/mol (2492.2840 without restraints) Performing minimization step: 3956. Total energy = 2498.1498 kcal/mol (2491.8058 without restraints) Performing minimization step: 3957. Total energy = 2497.6726 kcal/mol (2491.3283 without restraints) Performing minimization step: 3958. Total energy = 2497.1955 kcal/mol (2490.8508 without restraints) Performing minimization step: 3959. Total energy = 2496.7184 kcal/mol (2490.3733 without restraints) Performing minimization step: 3960. Total energy = 2496.2418 kcal/mol (2489.8963 without restraints) Performing minimization step: 3961. Total energy = 2495.7654 kcal/mol (2489.4197 without restraints) Performing minimization step: 3962. Total energy = 2495.2893 kcal/mol (2488.9432 without restraints) Performing minimization step: 3963. Total energy = 2494.8131 kcal/mol (2488.4665 without restraints) Performing minimization step: 3964. Total energy = 2494.3366 kcal/mol (2487.9897 without restraints) Performing minimization step: 3965. Total energy = 2493.8604 kcal/mol (2487.5131 without restraints) Performing minimization step: 3966. Total energy = 2493.3843 kcal/mol (2487.0366 without restraints) Performing minimization step: 3967. Total energy = 2492.9084 kcal/mol (2486.5605 without restraints) Performing minimization step: 3968. Total energy = 2492.4333 kcal/mol (2486.0849 without restraints) Performing minimization step: 3969. Total energy = 2491.9577 kcal/mol (2485.6090 without restraints) Performing minimization step: 3970. Total energy = 2491.4825 kcal/mol (2485.1334 without restraints) Performing minimization step: 3971. Total energy = 2491.0073 kcal/mol (2484.6578 without restraints) Performing minimization step: 3972. Total energy = 2490.5322 kcal/mol (2484.1824 without restraints) Performing minimization step: 3973. Total energy = 2490.0571 kcal/mol (2483.7069 without restraints) Performing minimization step: 3974. Total energy = 2489.5821 kcal/mol (2483.2315 without restraints) Performing minimization step: 3975. Total energy = 2489.1075 kcal/mol (2482.7565 without restraints) Performing minimization step: 3976. Total energy = 2488.6329 kcal/mol (2482.2816 without restraints) Performing minimization step: 3977. Total energy = 2488.1584 kcal/mol (2481.8068 without restraints) Performing minimization step: 3978. Total energy = 2487.6839 kcal/mol (2481.3319 without restraints) Performing minimization step: 3979. Total energy = 2487.2094 kcal/mol (2480.8572 without restraints) Performing minimization step: 3980. Total energy = 2486.7355 kcal/mol (2480.3828 without restraints) Performing minimization step: 3981. Total energy = 2486.2618 kcal/mol (2479.9089 without restraints) Performing minimization step: 3982. Total energy = 2485.7883 kcal/mol (2479.4348 without restraints) Performing minimization step: 3983. Total energy = 2485.3148 kcal/mol (2478.9609 without restraints) Performing minimization step: 3984. Total energy = 2484.8413 kcal/mol (2478.4870 without restraints) Performing minimization step: 3985. Total energy = 2484.3676 kcal/mol (2478.0130 without restraints) Performing minimization step: 3986. Total energy = 2483.8951 kcal/mol (2477.5402 without restraints) Performing minimization step: 3987. Total energy = 2483.4221 kcal/mol (2477.0668 without restraints) Performing minimization step: 3988. Total energy = 2482.9491 kcal/mol (2476.5934 without restraints) Performing minimization step: 3989. Total energy = 2482.4766 kcal/mol (2476.1206 without restraints) Performing minimization step: 3990. Total energy = 2482.0045 kcal/mol (2475.6481 without restraints) Performing minimization step: 3991. Total energy = 2481.5322 kcal/mol (2475.1754 without restraints) Performing minimization step: 3992. Total energy = 2481.0602 kcal/mol (2474.7033 without restraints) Performing minimization step: 3993. Total energy = 2480.5885 kcal/mol (2474.2309 without restraints) Performing minimization step: 3994. Total energy = 2480.1167 kcal/mol (2473.7589 without restraints) Performing minimization step: 3995. Total energy = 2479.6454 kcal/mol (2473.2871 without restraints) Performing minimization step: 3996. Total energy = 2479.1740 kcal/mol (2472.8153 without restraints) Performing minimization step: 3997. Total energy = 2478.7026 kcal/mol (2472.3435 without restraints) Performing minimization step: 3998. Total energy = 2478.2316 kcal/mol (2471.8722 without restraints) Performing minimization step: 3999. Total energy = 2477.7601 kcal/mol (2471.4003 without restraints) Performing minimization step: 4000. Total energy = 2477.2889 kcal/mol (2470.9287 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 2476.8181 kcal/mol (2470.4577 without restraints) Performing minimization step: 4002. Total energy = 2476.3472 kcal/mol (2469.9864 without restraints) Performing minimization step: 4003. Total energy = 2475.8770 kcal/mol (2469.5157 without restraints) Performing minimization step: 4004. Total energy = 2475.4070 kcal/mol (2469.0456 without restraints) Performing minimization step: 4005. Total energy = 2474.9371 kcal/mol (2468.5751 without restraints) Performing minimization step: 4006. Total energy = 2474.4671 kcal/mol (2468.1048 without restraints) Performing minimization step: 4007. Total energy = 2473.9968 kcal/mol (2467.6340 without restraints) Performing minimization step: 4008. Total energy = 2473.5268 kcal/mol (2467.1636 without restraints) Performing minimization step: 4009. Total energy = 2473.0571 kcal/mol (2466.6936 without restraints) Performing minimization step: 4010. Total energy = 2472.5876 kcal/mol (2466.2239 without restraints) Performing minimization step: 4011. Total energy = 2472.1184 kcal/mol (2465.7542 without restraints) Performing minimization step: 4012. Total energy = 2471.6490 kcal/mol (2465.2843 without restraints) Performing minimization step: 4013. Total energy = 2471.1796 kcal/mol (2464.8147 without restraints) Performing minimization step: 4014. Total energy = 2470.7107 kcal/mol (2464.3453 without restraints) Performing minimization step: 4015. Total energy = 2470.2420 kcal/mol (2463.8763 without restraints) Performing minimization step: 4016. Total energy = 2469.7734 kcal/mol (2463.4072 without restraints) Performing minimization step: 4017. Total energy = 2469.3045 kcal/mol (2462.9381 without restraints) Performing minimization step: 4018. Total energy = 2468.8360 kcal/mol (2462.4692 without restraints) Performing minimization step: 4019. Total energy = 2468.3676 kcal/mol (2462.0003 without restraints) Performing minimization step: 4020. Total energy = 2467.8996 kcal/mol (2461.5319 without restraints) Performing minimization step: 4021. Total energy = 2467.4316 kcal/mol (2461.0636 without restraints) Performing minimization step: 4022. Total energy = 2466.9637 kcal/mol (2460.5953 without restraints) Performing minimization step: 4023. Total energy = 2466.4958 kcal/mol (2460.1271 without restraints) Performing minimization step: 4024. Total energy = 2466.0285 kcal/mol (2459.6595 without restraints) Performing minimization step: 4025. Total energy = 2465.5613 kcal/mol (2459.1918 without restraints) Performing minimization step: 4026. Total energy = 2465.0938 kcal/mol (2458.7239 without restraints) Performing minimization step: 4027. Total energy = 2464.6268 kcal/mol (2458.2565 without restraints) Performing minimization step: 4028. Total energy = 2464.1596 kcal/mol (2457.7890 without restraints) Performing minimization step: 4029. Total energy = 2463.6930 kcal/mol (2457.3221 without restraints) Performing minimization step: 4030. Total energy = 2463.2262 kcal/mol (2456.8548 without restraints) Performing minimization step: 4031. Total energy = 2462.7594 kcal/mol (2456.3877 without restraints) Performing minimization step: 4032. Total energy = 2462.2930 kcal/mol (2455.9210 without restraints) Performing minimization step: 4033. Total energy = 2461.8267 kcal/mol (2455.4542 without restraints) Performing minimization step: 4034. Total energy = 2461.3605 kcal/mol (2454.9876 without restraints) Performing minimization step: 4035. Total energy = 2460.8944 kcal/mol (2454.5211 without restraints) Performing minimization step: 4036. Total energy = 2460.4284 kcal/mol (2454.0547 without restraints) Performing minimization step: 4037. Total energy = 2459.9625 kcal/mol (2453.5885 without restraints) Performing minimization step: 4038. Total energy = 2459.4968 kcal/mol (2453.1225 without restraints) Performing minimization step: 4039. Total energy = 2459.0315 kcal/mol (2452.6567 without restraints) Performing minimization step: 4040. Total energy = 2458.5661 kcal/mol (2452.1910 without restraints) Performing minimization step: 4041. Total energy = 2458.1008 kcal/mol (2451.7253 without restraints) Performing minimization step: 4042. Total energy = 2457.6360 kcal/mol (2451.2601 without restraints) Performing minimization step: 4043. Total energy = 2457.1714 kcal/mol (2450.7951 without restraints) Performing minimization step: 4044. Total energy = 2456.7066 kcal/mol (2450.3300 without restraints) Performing minimization step: 4045. Total energy = 2456.2423 kcal/mol (2449.8654 without restraints) Performing minimization step: 4046. Total energy = 2455.7783 kcal/mol (2449.4009 without restraints) Performing minimization step: 4047. Total energy = 2455.3142 kcal/mol (2448.9366 without restraints) Performing minimization step: 4048. Total energy = 2454.8502 kcal/mol (2448.4720 without restraints) Performing minimization step: 4049. Total energy = 2454.3861 kcal/mol (2448.0075 without restraints) Performing minimization step: 4050. Total energy = 2453.9229 kcal/mol (2447.5440 without restraints) Performing minimization step: 4051. Total energy = 2453.4593 kcal/mol (2447.0800 without restraints) Performing minimization step: 4052. Total energy = 2452.9955 kcal/mol (2446.6158 without restraints) Performing minimization step: 4053. Total energy = 2452.5322 kcal/mol (2446.1522 without restraints) Performing minimization step: 4054. Total energy = 2452.0693 kcal/mol (2445.6890 without restraints) Performing minimization step: 4055. Total energy = 2451.6064 kcal/mol (2445.2256 without restraints) Performing minimization step: 4056. Total energy = 2451.1432 kcal/mol (2444.7620 without restraints) Performing minimization step: 4057. Total energy = 2450.6802 kcal/mol (2444.2985 without restraints) Performing minimization step: 4058. Total energy = 2450.2172 kcal/mol (2443.8353 without restraints) Performing minimization step: 4059. Total energy = 2449.7547 kcal/mol (2443.3723 without restraints) Performing minimization step: 4060. Total energy = 2449.2925 kcal/mol (2442.9098 without restraints) Performing minimization step: 4061. Total energy = 2448.8303 kcal/mol (2442.4472 without restraints) Performing minimization step: 4062. Total energy = 2448.3685 kcal/mol (2441.9853 without restraints) Performing minimization step: 4063. Total energy = 2447.9073 kcal/mol (2441.5234 without restraints) Performing minimization step: 4064. Total energy = 2447.4454 kcal/mol (2441.0610 without restraints) Performing minimization step: 4065. Total energy = 2446.9836 kcal/mol (2440.5989 without restraints) Performing minimization step: 4066. Total energy = 2446.5220 kcal/mol (2440.1370 without restraints) Performing minimization step: 4067. Total energy = 2446.0608 kcal/mol (2439.6753 without restraints) Performing minimization step: 4068. Total energy = 2445.5998 kcal/mol (2439.2140 without restraints) Performing minimization step: 4069. Total energy = 2445.1391 kcal/mol (2438.7531 without restraints) Performing minimization step: 4070. Total energy = 2444.6787 kcal/mol (2438.2923 without restraints) Performing minimization step: 4071. Total energy = 2444.2190 kcal/mol (2437.8320 without restraints) Performing minimization step: 4072. Total energy = 2443.7582 kcal/mol (2437.3708 without restraints) Performing minimization step: 4073. Total energy = 2443.2984 kcal/mol (2436.9107 without restraints) Performing minimization step: 4074. Total energy = 2442.8384 kcal/mol (2436.4503 without restraints) Performing minimization step: 4075. Total energy = 2442.3788 kcal/mol (2435.9903 without restraints) Performing minimization step: 4076. Total energy = 2441.9191 kcal/mol (2435.5303 without restraints) Performing minimization step: 4077. Total energy = 2441.4596 kcal/mol (2435.0704 without restraints) Performing minimization step: 4078. Total energy = 2441.0004 kcal/mol (2434.6108 without restraints) Performing minimization step: 4079. Total energy = 2440.5409 kcal/mol (2434.1509 without restraints) Performing minimization step: 4080. Total energy = 2440.0820 kcal/mol (2433.6916 without restraints) Performing minimization step: 4081. Total energy = 2439.6232 kcal/mol (2433.2324 without restraints) Performing minimization step: 4082. Total energy = 2439.1644 kcal/mol (2432.7732 without restraints) Performing minimization step: 4083. Total energy = 2438.7059 kcal/mol (2432.3145 without restraints) Performing minimization step: 4084. Total energy = 2438.2478 kcal/mol (2431.8559 without restraints) Performing minimization step: 4085. Total energy = 2437.7893 kcal/mol (2431.3970 without restraints) Performing minimization step: 4086. Total energy = 2437.3310 kcal/mol (2430.9384 without restraints) Performing minimization step: 4087. Total energy = 2436.8729 kcal/mol (2430.4798 without restraints) Performing minimization step: 4088. Total energy = 2436.4151 kcal/mol (2430.0216 without restraints) Performing minimization step: 4089. Total energy = 2435.9574 kcal/mol (2429.5637 without restraints) Performing minimization step: 4090. Total energy = 2435.4999 kcal/mol (2429.1057 without restraints) Performing minimization step: 4091. Total energy = 2435.0428 kcal/mol (2428.6482 without restraints) Performing minimization step: 4092. Total energy = 2434.5861 kcal/mol (2428.1911 without restraints) Performing minimization step: 4093. Total energy = 2434.1289 kcal/mol (2427.7335 without restraints) Performing minimization step: 4094. Total energy = 2433.6720 kcal/mol (2427.2763 without restraints) Performing minimization step: 4095. Total energy = 2433.2152 kcal/mol (2426.8191 without restraints) Performing minimization step: 4096. Total energy = 2432.7587 kcal/mol (2426.3622 without restraints) Performing minimization step: 4097. Total energy = 2432.3026 kcal/mol (2425.9056 without restraints) Performing minimization step: 4098. Total energy = 2431.8462 kcal/mol (2425.4489 without restraints) Performing minimization step: 4099. Total energy = 2431.3900 kcal/mol (2424.9922 without restraints) Performing minimization step: 4100. Total energy = 2430.9340 kcal/mol (2424.5358 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 2430.4783 kcal/mol (2424.0799 without restraints) Performing minimization step: 4102. Total energy = 2430.0226 kcal/mol (2423.6237 without restraints) Performing minimization step: 4103. Total energy = 2429.5672 kcal/mol (2423.1680 without restraints) Performing minimization step: 4104. Total energy = 2429.1119 kcal/mol (2422.7123 without restraints) Performing minimization step: 4105. Total energy = 2428.6576 kcal/mol (2422.2576 without restraints) Performing minimization step: 4106. Total energy = 2428.2028 kcal/mol (2421.8024 without restraints) Performing minimization step: 4107. Total energy = 2427.7479 kcal/mol (2421.3471 without restraints) Performing minimization step: 4108. Total energy = 2427.2929 kcal/mol (2420.8916 without restraints) Performing minimization step: 4109. Total energy = 2426.8386 kcal/mol (2420.4372 without restraints) Performing minimization step: 4110. Total energy = 2426.3845 kcal/mol (2419.9826 without restraints) Performing minimization step: 4111. Total energy = 2425.9307 kcal/mol (2419.5284 without restraints) Performing minimization step: 4112. Total energy = 2425.4768 kcal/mol (2419.0740 without restraints) Performing minimization step: 4113. Total energy = 2425.0231 kcal/mol (2418.6200 without restraints) Performing minimization step: 4114. Total energy = 2424.5696 kcal/mol (2418.1664 without restraints) Performing minimization step: 4115. Total energy = 2424.1170 kcal/mol (2417.7132 without restraints) Performing minimization step: 4116. Total energy = 2423.6639 kcal/mol (2417.2596 without restraints) Performing minimization step: 4117. Total energy = 2423.2107 kcal/mol (2416.8060 without restraints) Performing minimization step: 4118. Total energy = 2422.7578 kcal/mol (2416.3528 without restraints) Performing minimization step: 4119. Total energy = 2422.3050 kcal/mol (2415.8996 without restraints) Performing minimization step: 4120. Total energy = 2421.8526 kcal/mol (2415.4467 without restraints) Performing minimization step: 4121. Total energy = 2421.4001 kcal/mol (2414.9939 without restraints) Performing minimization step: 4122. Total energy = 2420.9483 kcal/mol (2414.5417 without restraints) Performing minimization step: 4123. Total energy = 2420.4964 kcal/mol (2414.0894 without restraints) Performing minimization step: 4124. Total energy = 2420.0441 kcal/mol (2413.6367 without restraints) Performing minimization step: 4125. Total energy = 2419.5926 kcal/mol (2413.1847 without restraints) Performing minimization step: 4126. Total energy = 2419.1409 kcal/mol (2412.7327 without restraints) Performing minimization step: 4127. Total energy = 2418.6896 kcal/mol (2412.2809 without restraints) Performing minimization step: 4128. Total energy = 2418.2378 kcal/mol (2411.8288 without restraints) Performing minimization step: 4129. Total energy = 2417.7873 kcal/mol (2411.3780 without restraints) Performing minimization step: 4130. Total energy = 2417.3369 kcal/mol (2410.9272 without restraints) Performing minimization step: 4131. Total energy = 2416.8866 kcal/mol (2410.4765 without restraints) Performing minimization step: 4132. Total energy = 2416.4357 kcal/mol (2410.0251 without restraints) Performing minimization step: 4133. Total energy = 2415.9853 kcal/mol (2409.5744 without restraints) Performing minimization step: 4134. Total energy = 2415.5353 kcal/mol (2409.1240 without restraints) Performing minimization step: 4135. Total energy = 2415.0855 kcal/mol (2408.6738 without restraints) Performing minimization step: 4136. Total energy = 2414.6357 kcal/mol (2408.2235 without restraints) Performing minimization step: 4137. Total energy = 2414.1860 kcal/mol (2407.7735 without restraints) Performing minimization step: 4138. Total energy = 2413.7365 kcal/mol (2407.3236 without restraints) Performing minimization step: 4139. Total energy = 2413.2873 kcal/mol (2406.8740 without restraints) Performing minimization step: 4140. Total energy = 2412.8386 kcal/mol (2406.4249 without restraints) Performing minimization step: 4141. Total energy = 2412.3897 kcal/mol (2405.9756 without restraints) Performing minimization step: 4142. Total energy = 2411.9407 kcal/mol (2405.5263 without restraints) Performing minimization step: 4143. Total energy = 2411.4926 kcal/mol (2405.0777 without restraints) Performing minimization step: 4144. Total energy = 2411.0443 kcal/mol (2404.6290 without restraints) Performing minimization step: 4145. Total energy = 2410.5963 kcal/mol (2404.1807 without restraints) Performing minimization step: 4146. Total energy = 2410.1486 kcal/mol (2403.7326 without restraints) Performing minimization step: 4147. Total energy = 2409.7008 kcal/mol (2403.2842 without restraints) Performing minimization step: 4148. Total energy = 2409.2531 kcal/mol (2402.8363 without restraints) Performing minimization step: 4149. Total energy = 2408.8058 kcal/mol (2402.3885 without restraints) Performing minimization step: 4150. Total energy = 2408.3588 kcal/mol (2401.9411 without restraints) Performing minimization step: 4151. Total energy = 2407.9114 kcal/mol (2401.4933 without restraints) Performing minimization step: 4152. Total energy = 2407.4649 kcal/mol (2401.0465 without restraints) Performing minimization step: 4153. Total energy = 2407.0186 kcal/mol (2400.5999 without restraints) Performing minimization step: 4154. Total energy = 2406.5725 kcal/mol (2400.1534 without restraints) Performing minimization step: 4155. Total energy = 2406.1266 kcal/mol (2399.7070 without restraints) Performing minimization step: 4156. Total energy = 2405.6805 kcal/mol (2399.2605 without restraints) Performing minimization step: 4157. Total energy = 2405.2347 kcal/mol (2398.8143 without restraints) Performing minimization step: 4158. Total energy = 2404.7892 kcal/mol (2398.3684 without restraints) Performing minimization step: 4159. Total energy = 2404.3440 kcal/mol (2397.9230 without restraints) Performing minimization step: 4160. Total energy = 2403.8990 kcal/mol (2397.4776 without restraints) Performing minimization step: 4161. Total energy = 2403.4539 kcal/mol (2397.0321 without restraints) Performing minimization step: 4162. Total energy = 2403.0094 kcal/mol (2396.5871 without restraints) Performing minimization step: 4163. Total energy = 2402.5647 kcal/mol (2396.1419 without restraints) Performing minimization step: 4164. Total energy = 2402.1202 kcal/mol (2395.6971 without restraints) Performing minimization step: 4165. Total energy = 2401.6760 kcal/mol (2395.2525 without restraints) Performing minimization step: 4166. Total energy = 2401.2319 kcal/mol (2394.8080 without restraints) Performing minimization step: 4167. Total energy = 2400.7883 kcal/mol (2394.3639 without restraints) Performing minimization step: 4168. Total energy = 2400.3448 kcal/mol (2393.9201 without restraints) Performing minimization step: 4169. Total energy = 2399.9015 kcal/mol (2393.4765 without restraints) Performing minimization step: 4170. Total energy = 2399.4583 kcal/mol (2393.0327 without restraints) Performing minimization step: 4171. Total energy = 2399.0154 kcal/mol (2392.5895 without restraints) Performing minimization step: 4172. Total energy = 2398.5729 kcal/mol (2392.1466 without restraints) Performing minimization step: 4173. Total energy = 2398.1303 kcal/mol (2391.7036 without restraints) Performing minimization step: 4174. Total energy = 2397.6881 kcal/mol (2391.2611 without restraints) Performing minimization step: 4175. Total energy = 2397.2459 kcal/mol (2390.8184 without restraints) Performing minimization step: 4176. Total energy = 2396.8042 kcal/mol (2390.3764 without restraints) Performing minimization step: 4177. Total energy = 2396.3625 kcal/mol (2389.9342 without restraints) Performing minimization step: 4178. Total energy = 2395.9210 kcal/mol (2389.4924 without restraints) Performing minimization step: 4179. Total energy = 2395.4801 kcal/mol (2389.0510 without restraints) Performing minimization step: 4180. Total energy = 2395.0390 kcal/mol (2388.6096 without restraints) Performing minimization step: 4181. Total energy = 2394.5984 kcal/mol (2388.1685 without restraints) Performing minimization step: 4182. Total energy = 2394.1576 kcal/mol (2387.7273 without restraints) Performing minimization step: 4183. Total energy = 2393.7172 kcal/mol (2387.2866 without restraints) Performing minimization step: 4184. Total energy = 2393.2770 kcal/mol (2386.8460 without restraints) Performing minimization step: 4185. Total energy = 2392.8369 kcal/mol (2386.4054 without restraints) Performing minimization step: 4186. Total energy = 2392.3970 kcal/mol (2385.9651 without restraints) Performing minimization step: 4187. Total energy = 2391.9573 kcal/mol (2385.5250 without restraints) Performing minimization step: 4188. Total energy = 2391.5179 kcal/mol (2385.0852 without restraints) Performing minimization step: 4189. Total energy = 2391.0787 kcal/mol (2384.6456 without restraints) Performing minimization step: 4190. Total energy = 2390.6401 kcal/mol (2384.2067 without restraints) Performing minimization step: 4191. Total energy = 2390.2014 kcal/mol (2383.7675 without restraints) Performing minimization step: 4192. Total energy = 2389.7623 kcal/mol (2383.3280 without restraints) Performing minimization step: 4193. Total energy = 2389.3242 kcal/mol (2382.8896 without restraints) Performing minimization step: 4194. Total energy = 2388.8860 kcal/mol (2382.4508 without restraints) Performing minimization step: 4195. Total energy = 2388.4479 kcal/mol (2382.0124 without restraints) Performing minimization step: 4196. Total energy = 2388.0106 kcal/mol (2381.5747 without restraints) Performing minimization step: 4197. Total energy = 2387.5730 kcal/mol (2381.1367 without restraints) Performing minimization step: 4198. Total energy = 2387.1358 kcal/mol (2380.6990 without restraints) Performing minimization step: 4199. Total energy = 2386.6986 kcal/mol (2380.2616 without restraints) Performing minimization step: 4200. Total energy = 2386.2617 kcal/mol (2379.8241 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 2385.8251 kcal/mol (2379.3874 without restraints) Performing minimization step: 4202. Total energy = 2385.3888 kcal/mol (2378.9505 without restraints) Performing minimization step: 4203. Total energy = 2384.9529 kcal/mol (2378.5142 without restraints) Performing minimization step: 4204. Total energy = 2384.5170 kcal/mol (2378.0779 without restraints) Performing minimization step: 4205. Total energy = 2384.0817 kcal/mol (2377.6422 without restraints) Performing minimization step: 4206. Total energy = 2383.6467 kcal/mol (2377.2068 without restraints) Performing minimization step: 4207. Total energy = 2383.2114 kcal/mol (2376.7711 without restraints) Performing minimization step: 4208. Total energy = 2382.7764 kcal/mol (2376.3357 without restraints) Performing minimization step: 4209. Total energy = 2382.3413 kcal/mol (2375.9003 without restraints) Performing minimization step: 4210. Total energy = 2381.9067 kcal/mol (2375.4653 without restraints) Performing minimization step: 4211. Total energy = 2381.4726 kcal/mol (2375.0307 without restraints) Performing minimization step: 4212. Total energy = 2381.0386 kcal/mol (2374.5963 without restraints) Performing minimization step: 4213. Total energy = 2380.6050 kcal/mol (2374.1623 without restraints) Performing minimization step: 4214. Total energy = 2380.1714 kcal/mol (2373.7283 without restraints) Performing minimization step: 4215. Total energy = 2379.7383 kcal/mol (2373.2948 without restraints) Performing minimization step: 4216. Total energy = 2379.3055 kcal/mol (2372.8616 without restraints) Performing minimization step: 4217. Total energy = 2378.8728 kcal/mol (2372.4285 without restraints) Performing minimization step: 4218. Total energy = 2378.4402 kcal/mol (2371.9955 without restraints) Performing minimization step: 4219. Total energy = 2378.0078 kcal/mol (2371.5627 without restraints) Performing minimization step: 4220. Total energy = 2377.5756 kcal/mol (2371.1301 without restraints) Performing minimization step: 4221. Total energy = 2377.1437 kcal/mol (2370.6978 without restraints) Performing minimization step: 4222. Total energy = 2376.7118 kcal/mol (2370.2655 without restraints) Performing minimization step: 4223. Total energy = 2376.2807 kcal/mol (2369.8341 without restraints) Performing minimization step: 4224. Total energy = 2375.8501 kcal/mol (2369.4031 without restraints) Performing minimization step: 4225. Total energy = 2375.4194 kcal/mol (2368.9719 without restraints) Performing minimization step: 4226. Total energy = 2374.9891 kcal/mol (2368.5412 without restraints) Performing minimization step: 4227. Total energy = 2374.5584 kcal/mol (2368.1101 without restraints) Performing minimization step: 4228. Total energy = 2374.1284 kcal/mol (2367.6798 without restraints) Performing minimization step: 4229. Total energy = 2373.6986 kcal/mol (2367.2494 without restraints) Performing minimization step: 4230. Total energy = 2373.2689 kcal/mol (2366.8194 without restraints) Performing minimization step: 4231. Total energy = 2372.8395 kcal/mol (2366.3895 without restraints) Performing minimization step: 4232. Total energy = 2372.4107 kcal/mol (2365.9603 without restraints) Performing minimization step: 4233. Total energy = 2371.9821 kcal/mol (2365.5313 without restraints) Performing minimization step: 4234. Total energy = 2371.5542 kcal/mol (2365.1030 without restraints) Performing minimization step: 4235. Total energy = 2371.1260 kcal/mol (2364.6744 without restraints) Performing minimization step: 4236. Total energy = 2370.6980 kcal/mol (2364.2460 without restraints) Performing minimization step: 4237. Total energy = 2370.2700 kcal/mol (2363.8176 without restraints) Performing minimization step: 4238. Total energy = 2369.8424 kcal/mol (2363.3896 without restraints) Performing minimization step: 4239. Total energy = 2369.4149 kcal/mol (2362.9617 without restraints) Performing minimization step: 4240. Total energy = 2368.9878 kcal/mol (2362.5342 without restraints) Performing minimization step: 4241. Total energy = 2368.5615 kcal/mol (2362.1075 without restraints) Performing minimization step: 4242. Total energy = 2368.1347 kcal/mol (2361.6803 without restraints) Performing minimization step: 4243. Total energy = 2367.7083 kcal/mol (2361.2535 without restraints) Performing minimization step: 4244. Total energy = 2367.2822 kcal/mol (2360.8270 without restraints) Performing minimization step: 4245. Total energy = 2366.8564 kcal/mol (2360.4009 without restraints) Performing minimization step: 4246. Total energy = 2366.4308 kcal/mol (2359.9747 without restraints) Performing minimization step: 4247. Total energy = 2366.0055 kcal/mol (2359.5491 without restraints) Performing minimization step: 4248. Total energy = 2365.5804 kcal/mol (2359.1236 without restraints) Performing minimization step: 4249. Total energy = 2365.1558 kcal/mol (2358.6986 without restraints) Performing minimization step: 4250. Total energy = 2364.7314 kcal/mol (2358.2737 without restraints) Performing minimization step: 4251. Total energy = 2364.3070 kcal/mol (2357.8489 without restraints) Performing minimization step: 4252. Total energy = 2363.8833 kcal/mol (2357.4249 without restraints) Performing minimization step: 4253. Total energy = 2363.4600 kcal/mol (2357.0011 without restraints) Performing minimization step: 4254. Total energy = 2363.0366 kcal/mol (2356.5773 without restraints) Performing minimization step: 4255. Total energy = 2362.6136 kcal/mol (2356.1539 without restraints) Performing minimization step: 4256. Total energy = 2362.1909 kcal/mol (2355.7308 without restraints) Performing minimization step: 4257. Total energy = 2361.7687 kcal/mol (2355.3084 without restraints) Performing minimization step: 4258. Total energy = 2361.3468 kcal/mol (2354.8858 without restraints) Performing minimization step: 4259. Total energy = 2360.9246 kcal/mol (2354.4633 without restraints) Performing minimization step: 4260. Total energy = 2360.5028 kcal/mol (2354.0410 without restraints) Performing minimization step: 4261. Total energy = 2360.0813 kcal/mol (2353.6191 without restraints) Performing minimization step: 4262. Total energy = 2359.6600 kcal/mol (2353.1975 without restraints) Performing minimization step: 4263. Total energy = 2359.2387 kcal/mol (2352.7757 without restraints) Performing minimization step: 4264. Total energy = 2358.8180 kcal/mol (2352.3546 without restraints) Performing minimization step: 4265. Total energy = 2358.3975 kcal/mol (2351.9337 without restraints) Performing minimization step: 4266. Total energy = 2357.9776 kcal/mol (2351.5133 without restraints) Performing minimization step: 4267. Total energy = 2357.5579 kcal/mol (2351.0933 without restraints) Performing minimization step: 4268. Total energy = 2357.1385 kcal/mol (2350.6734 without restraints) Performing minimization step: 4269. Total energy = 2356.7192 kcal/mol (2350.2537 without restraints) Performing minimization step: 4270. Total energy = 2356.3006 kcal/mol (2349.8348 without restraints) Performing minimization step: 4271. Total energy = 2355.8823 kcal/mol (2349.4160 without restraints) Performing minimization step: 4272. Total energy = 2355.4641 kcal/mol (2348.9974 without restraints) Performing minimization step: 4273. Total energy = 2355.0460 kcal/mol (2348.5789 without restraints) Performing minimization step: 4274. Total energy = 2354.6282 kcal/mol (2348.1606 without restraints) Performing minimization step: 4275. Total energy = 2354.2106 kcal/mol (2347.7428 without restraints) Performing minimization step: 4276. Total energy = 2353.7936 kcal/mol (2347.3253 without restraints) Performing minimization step: 4277. Total energy = 2353.3767 kcal/mol (2346.9080 without restraints) Performing minimization step: 4278. Total energy = 2352.9602 kcal/mol (2346.4912 without restraints) Performing minimization step: 4279. Total energy = 2352.5443 kcal/mol (2346.0747 without restraints) Performing minimization step: 4280. Total energy = 2352.1286 kcal/mol (2345.6586 without restraints) Performing minimization step: 4281. Total energy = 2351.7128 kcal/mol (2345.2424 without restraints) Performing minimization step: 4282. Total energy = 2351.2970 kcal/mol (2344.8262 without restraints) Performing minimization step: 4283. Total energy = 2350.8821 kcal/mol (2344.4108 without restraints) Performing minimization step: 4284. Total energy = 2350.4671 kcal/mol (2343.9955 without restraints) Performing minimization step: 4285. Total energy = 2350.0525 kcal/mol (2343.5804 without restraints) Performing minimization step: 4286. Total energy = 2349.6381 kcal/mol (2343.1656 without restraints) Performing minimization step: 4287. Total energy = 2349.2244 kcal/mol (2342.7515 without restraints) Performing minimization step: 4288. Total energy = 2348.8104 kcal/mol (2342.3371 without restraints) Performing minimization step: 4289. Total energy = 2348.3963 kcal/mol (2341.9226 without restraints) Performing minimization step: 4290. Total energy = 2347.9830 kcal/mol (2341.5089 without restraints) Performing minimization step: 4291. Total energy = 2347.5704 kcal/mol (2341.0959 without restraints) Performing minimization step: 4292. Total energy = 2347.1580 kcal/mol (2340.6831 without restraints) Performing minimization step: 4293. Total energy = 2346.7458 kcal/mol (2340.2704 without restraints) Performing minimization step: 4294. Total energy = 2346.3335 kcal/mol (2339.8577 without restraints) Performing minimization step: 4295. Total energy = 2345.9218 kcal/mol (2339.4456 without restraints) Performing minimization step: 4296. Total energy = 2345.5105 kcal/mol (2339.0338 without restraints) Performing minimization step: 4297. Total energy = 2345.0995 kcal/mol (2338.6226 without restraints) Performing minimization step: 4298. Total energy = 2344.6892 kcal/mol (2338.2117 without restraints) Performing minimization step: 4299. Total energy = 2344.2787 kcal/mol (2337.8008 without restraints) Performing minimization step: 4300. Total energy = 2343.8687 kcal/mol (2337.3905 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 2343.4590 kcal/mol (2336.9802 without restraints) Performing minimization step: 4302. Total energy = 2343.0496 kcal/mol (2336.5704 without restraints) Performing minimization step: 4303. Total energy = 2342.6405 kcal/mol (2336.1609 without restraints) Performing minimization step: 4304. Total energy = 2342.2316 kcal/mol (2335.7517 without restraints) Performing minimization step: 4305. Total energy = 2341.8240 kcal/mol (2335.3436 without restraints) Performing minimization step: 4306. Total energy = 2341.4157 kcal/mol (2334.9349 without restraints) Performing minimization step: 4307. Total energy = 2341.0077 kcal/mol (2334.5265 without restraints) Performing minimization step: 4308. Total energy = 2340.6003 kcal/mol (2334.1188 without restraints) Performing minimization step: 4309. Total energy = 2340.1931 kcal/mol (2333.7110 without restraints) Performing minimization step: 4310. Total energy = 2339.7860 kcal/mol (2333.3035 without restraints) Performing minimization step: 4311. Total energy = 2339.3792 kcal/mol (2332.8962 without restraints) Performing minimization step: 4312. Total energy = 2338.9725 kcal/mol (2332.4891 without restraints) Performing minimization step: 4313. Total energy = 2338.5661 kcal/mol (2332.0823 without restraints) Performing minimization step: 4314. Total energy = 2338.1602 kcal/mol (2331.6760 without restraints) Performing minimization step: 4315. Total energy = 2337.7548 kcal/mol (2331.2703 without restraints) Performing minimization step: 4316. Total energy = 2337.3501 kcal/mol (2330.8652 without restraints) Performing minimization step: 4317. Total energy = 2336.9455 kcal/mol (2330.4600 without restraints) Performing minimization step: 4318. Total energy = 2336.5409 kcal/mol (2330.0550 without restraints) Performing minimization step: 4319. Total energy = 2336.1364 kcal/mol (2329.6501 without restraints) Performing minimization step: 4320. Total energy = 2335.7322 kcal/mol (2329.2455 without restraints) Performing minimization step: 4321. Total energy = 2335.3288 kcal/mol (2328.8417 without restraints) Performing minimization step: 4322. Total energy = 2334.9259 kcal/mol (2328.4385 without restraints) Performing minimization step: 4323. Total energy = 2334.5231 kcal/mol (2328.0351 without restraints) Performing minimization step: 4324. Total energy = 2334.1204 kcal/mol (2327.6320 without restraints) Performing minimization step: 4325. Total energy = 2333.7181 kcal/mol (2327.2292 without restraints) Performing minimization step: 4326. Total energy = 2333.3162 kcal/mol (2326.8270 without restraints) Performing minimization step: 4327. Total energy = 2332.9148 kcal/mol (2326.4251 without restraints) Performing minimization step: 4328. Total energy = 2332.5134 kcal/mol (2326.0232 without restraints) Performing minimization step: 4329. Total energy = 2332.1122 kcal/mol (2325.6216 without restraints) Performing minimization step: 4330. Total energy = 2331.7114 kcal/mol (2325.2204 without restraints) Performing minimization step: 4331. Total energy = 2331.3117 kcal/mol (2324.8202 without restraints) Performing minimization step: 4332. Total energy = 2330.9116 kcal/mol (2324.4198 without restraints) Performing minimization step: 4333. Total energy = 2330.5120 kcal/mol (2324.0198 without restraints) Performing minimization step: 4334. Total energy = 2330.1125 kcal/mol (2323.6198 without restraints) Performing minimization step: 4335. Total energy = 2329.7133 kcal/mol (2323.2202 without restraints) Performing minimization step: 4336. Total energy = 2329.3145 kcal/mol (2322.8210 without restraints) Performing minimization step: 4337. Total energy = 2328.9165 kcal/mol (2322.4226 without restraints) Performing minimization step: 4338. Total energy = 2328.5183 kcal/mol (2322.0239 without restraints) Performing minimization step: 4339. Total energy = 2328.1208 kcal/mol (2321.6259 without restraints) Performing minimization step: 4340. Total energy = 2327.7234 kcal/mol (2321.2282 without restraints) Performing minimization step: 4341. Total energy = 2327.3266 kcal/mol (2320.8309 without restraints) Performing minimization step: 4342. Total energy = 2326.9294 kcal/mol (2320.4333 without restraints) Performing minimization step: 4343. Total energy = 2326.5329 kcal/mol (2320.0363 without restraints) Performing minimization step: 4344. Total energy = 2326.1365 kcal/mol (2319.6395 without restraints) Performing minimization step: 4345. Total energy = 2325.7411 kcal/mol (2319.2437 without restraints) Performing minimization step: 4346. Total energy = 2325.3452 kcal/mol (2318.8473 without restraints) Performing minimization step: 4347. Total energy = 2324.9497 kcal/mol (2318.4514 without restraints) Performing minimization step: 4348. Total energy = 2324.5548 kcal/mol (2318.0561 without restraints) Performing minimization step: 4349. Total energy = 2324.1603 kcal/mol (2317.6611 without restraints) Performing minimization step: 4350. Total energy = 2323.7660 kcal/mol (2317.2666 without restraints) Performing minimization step: 4351. Total energy = 2323.3722 kcal/mol (2316.8722 without restraints) Performing minimization step: 4352. Total energy = 2322.9789 kcal/mol (2316.4785 without restraints) Performing minimization step: 4353. Total energy = 2322.5854 kcal/mol (2316.0846 without restraints) Performing minimization step: 4354. Total energy = 2322.1922 kcal/mol (2315.6909 without restraints) Performing minimization step: 4355. Total energy = 2321.7995 kcal/mol (2315.2979 without restraints) Performing minimization step: 4356. Total energy = 2321.4072 kcal/mol (2314.9051 without restraints) Performing minimization step: 4357. Total energy = 2321.0157 kcal/mol (2314.5132 without restraints) Performing minimization step: 4358. Total energy = 2320.6242 kcal/mol (2314.1212 without restraints) Performing minimization step: 4359. Total energy = 2320.2327 kcal/mol (2313.7292 without restraints) Performing minimization step: 4360. Total energy = 2319.8414 kcal/mol (2313.3375 without restraints) Performing minimization step: 4361. Total energy = 2319.4505 kcal/mol (2312.9462 without restraints) Performing minimization step: 4362. Total energy = 2319.0599 kcal/mol (2312.5552 without restraints) Performing minimization step: 4363. Total energy = 2318.6700 kcal/mol (2312.1648 without restraints) Performing minimization step: 4364. Total energy = 2318.2803 kcal/mol (2311.7748 without restraints) Performing minimization step: 4365. Total energy = 2317.8910 kcal/mol (2311.3849 without restraints) Performing minimization step: 4366. Total energy = 2317.5017 kcal/mol (2310.9951 without restraints) Performing minimization step: 4367. Total energy = 2317.1127 kcal/mol (2310.6057 without restraints) Performing minimization step: 4368. Total energy = 2316.7241 kcal/mol (2310.2165 without restraints) Performing minimization step: 4369. Total energy = 2316.3358 kcal/mol (2309.8279 without restraints) Performing minimization step: 4370. Total energy = 2315.9476 kcal/mol (2309.4393 without restraints) Performing minimization step: 4371. Total energy = 2315.5598 kcal/mol (2309.0511 without restraints) Performing minimization step: 4372. Total energy = 2315.1724 kcal/mol (2308.6633 without restraints) Performing minimization step: 4373. Total energy = 2314.7853 kcal/mol (2308.2757 without restraints) Performing minimization step: 4374. Total energy = 2314.3994 kcal/mol (2307.8894 without restraints) Performing minimization step: 4375. Total energy = 2314.0129 kcal/mol (2307.5023 without restraints) Performing minimization step: 4376. Total energy = 2313.6269 kcal/mol (2307.1160 without restraints) Performing minimization step: 4377. Total energy = 2313.2413 kcal/mol (2306.7299 without restraints) Performing minimization step: 4378. Total energy = 2312.8558 kcal/mol (2306.3440 without restraints) Performing minimization step: 4379. Total energy = 2312.4706 kcal/mol (2305.9584 without restraints) Performing minimization step: 4380. Total energy = 2312.0863 kcal/mol (2305.5737 without restraints) Performing minimization step: 4381. Total energy = 2311.7022 kcal/mol (2305.1891 without restraints) Performing minimization step: 4382. Total energy = 2311.3177 kcal/mol (2304.8041 without restraints) Performing minimization step: 4383. Total energy = 2310.9344 kcal/mol (2304.4205 without restraints) Performing minimization step: 4384. Total energy = 2310.5516 kcal/mol (2304.0371 without restraints) Performing minimization step: 4385. Total energy = 2310.1686 kcal/mol (2303.6537 without restraints) Performing minimization step: 4386. Total energy = 2309.7857 kcal/mol (2303.2703 without restraints) Performing minimization step: 4387. Total energy = 2309.4031 kcal/mol (2302.8873 without restraints) Performing minimization step: 4388. Total energy = 2309.0210 kcal/mol (2302.5047 without restraints) Performing minimization step: 4389. Total energy = 2308.6395 kcal/mol (2302.1229 without restraints) Performing minimization step: 4390. Total energy = 2308.2581 kcal/mol (2301.7410 without restraints) Performing minimization step: 4391. Total energy = 2307.8768 kcal/mol (2301.3592 without restraints) Performing minimization step: 4392. Total energy = 2307.4957 kcal/mol (2300.9777 without restraints) Performing minimization step: 4393. Total energy = 2307.1149 kcal/mol (2300.5964 without restraints) Performing minimization step: 4394. Total energy = 2306.7347 kcal/mol (2300.2159 without restraints) Performing minimization step: 4395. Total energy = 2306.3552 kcal/mol (2299.8358 without restraints) Performing minimization step: 4396. Total energy = 2305.9754 kcal/mol (2299.4555 without restraints) Performing minimization step: 4397. Total energy = 2305.5953 kcal/mol (2299.0750 without restraints) Performing minimization step: 4398. Total energy = 2305.2170 kcal/mol (2298.6964 without restraints) Performing minimization step: 4399. Total energy = 2304.8387 kcal/mol (2298.3175 without restraints) Performing minimization step: 4400. Total energy = 2304.4601 kcal/mol (2297.9384 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 2304.0819 kcal/mol (2297.5598 without restraints) Performing minimization step: 4402. Total energy = 2303.7041 kcal/mol (2297.1816 without restraints) Performing minimization step: 4403. Total energy = 2303.3268 kcal/mol (2296.8040 without restraints) Performing minimization step: 4404. Total energy = 2302.9499 kcal/mol (2296.4266 without restraints) Performing minimization step: 4405. Total energy = 2302.5731 kcal/mol (2296.0491 without restraints) Performing minimization step: 4406. Total energy = 2302.1968 kcal/mol (2295.6730 without restraints) Performing minimization step: 4407. Total energy = 2301.8208 kcal/mol (2295.2961 without restraints) Performing minimization step: 4408. Total energy = 2301.4444 kcal/mol (2294.9191 without restraints) Performing minimization step: 4409. Total energy = 2301.0686 kcal/mol (2294.5431 without restraints) Performing minimization step: 4410. Total energy = 2300.6936 kcal/mol (2294.1675 without restraints) Performing minimization step: 4411. Total energy = 2300.3186 kcal/mol (2293.7920 without restraints) Performing minimization step: 4412. Total energy = 2299.9440 kcal/mol (2293.4169 without restraints) Performing minimization step: 4413. Total energy = 2299.5699 kcal/mol (2293.0425 without restraints) Performing minimization step: 4414. Total energy = 2299.1959 kcal/mol (2292.6679 without restraints) Performing minimization step: 4415. Total energy = 2298.8219 kcal/mol (2292.2935 without restraints) Performing minimization step: 4416. Total energy = 2298.4485 kcal/mol (2291.9196 without restraints) Performing minimization step: 4417. Total energy = 2298.0756 kcal/mol (2291.5462 without restraints) Performing minimization step: 4418. Total energy = 2297.7028 kcal/mol (2291.1730 without restraints) Performing minimization step: 4419. Total energy = 2297.3301 kcal/mol (2290.7999 without restraints) Performing minimization step: 4420. Total energy = 2296.9579 kcal/mol (2290.4274 without restraints) Performing minimization step: 4421. Total energy = 2296.5864 kcal/mol (2290.0552 without restraints) Performing minimization step: 4422. Total energy = 2296.2147 kcal/mol (2289.6831 without restraints) Performing minimization step: 4423. Total energy = 2295.8432 kcal/mol (2289.3111 without restraints) Performing minimization step: 4424. Total energy = 2295.4721 kcal/mol (2288.9395 without restraints) Performing minimization step: 4425. Total energy = 2295.1014 kcal/mol (2288.5684 without restraints) Performing minimization step: 4426. Total energy = 2294.7309 kcal/mol (2288.1975 without restraints) Performing minimization step: 4427. Total energy = 2294.3602 kcal/mol (2287.8263 without restraints) Performing minimization step: 4428. Total energy = 2293.9903 kcal/mol (2287.4560 without restraints) Performing minimization step: 4429. Total energy = 2293.6207 kcal/mol (2287.0859 without restraints) Performing minimization step: 4430. Total energy = 2293.2512 kcal/mol (2286.7159 without restraints) Performing minimization step: 4431. Total energy = 2292.8823 kcal/mol (2286.3467 without restraints) Performing minimization step: 4432. Total energy = 2292.5136 kcal/mol (2285.9775 without restraints) Performing minimization step: 4433. Total energy = 2292.1455 kcal/mol (2285.6088 without restraints) Performing minimization step: 4434. Total energy = 2291.7777 kcal/mol (2285.2406 without restraints) Performing minimization step: 4435. Total energy = 2291.4098 kcal/mol (2284.8723 without restraints) Performing minimization step: 4436. Total energy = 2291.0421 kcal/mol (2284.5040 without restraints) Performing minimization step: 4437. Total energy = 2290.6746 kcal/mol (2284.1360 without restraints) Performing minimization step: 4438. Total energy = 2290.3075 kcal/mol (2283.7685 without restraints) Performing minimization step: 4439. Total energy = 2289.9411 kcal/mol (2283.4016 without restraints) Performing minimization step: 4440. Total energy = 2289.5744 kcal/mol (2283.0345 without restraints) Performing minimization step: 4441. Total energy = 2289.2084 kcal/mol (2282.6680 without restraints) Performing minimization step: 4442. Total energy = 2288.8426 kcal/mol (2282.3018 without restraints) Performing minimization step: 4443. Total energy = 2288.4773 kcal/mol (2281.9360 without restraints) Performing minimization step: 4444. Total energy = 2288.1119 kcal/mol (2281.5702 without restraints) Performing minimization step: 4445. Total energy = 2287.7468 kcal/mol (2281.2045 without restraints) Performing minimization step: 4446. Total energy = 2287.3818 kcal/mol (2280.8391 without restraints) Performing minimization step: 4447. Total energy = 2287.0171 kcal/mol (2280.4739 without restraints) Performing minimization step: 4448. Total energy = 2286.6526 kcal/mol (2280.1090 without restraints) Performing minimization step: 4449. Total energy = 2286.2885 kcal/mol (2279.7444 without restraints) Performing minimization step: 4450. Total energy = 2285.9248 kcal/mol (2279.3802 without restraints) Performing minimization step: 4451. Total energy = 2285.5610 kcal/mol (2279.0160 without restraints) Performing minimization step: 4452. Total energy = 2285.1979 kcal/mol (2278.6524 without restraints) Performing minimization step: 4453. Total energy = 2284.8349 kcal/mol (2278.2889 without restraints) Performing minimization step: 4454. Total energy = 2284.4728 kcal/mol (2277.9264 without restraints) Performing minimization step: 4455. Total energy = 2284.1105 kcal/mol (2277.5636 without restraints) Performing minimization step: 4456. Total energy = 2283.7484 kcal/mol (2277.2010 without restraints) Performing minimization step: 4457. Total energy = 2283.3865 kcal/mol (2276.8386 without restraints) Performing minimization step: 4458. Total energy = 2283.0248 kcal/mol (2276.4765 without restraints) Performing minimization step: 4459. Total energy = 2282.6634 kcal/mol (2276.1146 without restraints) Performing minimization step: 4460. Total energy = 2282.3028 kcal/mol (2275.7535 without restraints) Performing minimization step: 4461. Total energy = 2281.9422 kcal/mol (2275.3924 without restraints) Performing minimization step: 4462. Total energy = 2281.5822 kcal/mol (2275.0320 without restraints) Performing minimization step: 4463. Total energy = 2281.2221 kcal/mol (2274.6714 without restraints) Performing minimization step: 4464. Total energy = 2280.8622 kcal/mol (2274.3111 without restraints) Performing minimization step: 4465. Total energy = 2280.5025 kcal/mol (2273.9509 without restraints) Performing minimization step: 4466. Total energy = 2280.1426 kcal/mol (2273.5905 without restraints) Performing minimization step: 4467. Total energy = 2279.7839 kcal/mol (2273.2313 without restraints) Performing minimization step: 4468. Total energy = 2279.4250 kcal/mol (2272.8719 without restraints) Performing minimization step: 4469. Total energy = 2279.0669 kcal/mol (2272.5134 without restraints) Performing minimization step: 4470. Total energy = 2278.7085 kcal/mol (2272.1545 without restraints) Performing minimization step: 4471. Total energy = 2278.3504 kcal/mol (2271.7959 without restraints) Performing minimization step: 4472. Total energy = 2277.9930 kcal/mol (2271.4380 without restraints) Performing minimization step: 4473. Total energy = 2277.6353 kcal/mol (2271.0798 without restraints) Performing minimization step: 4474. Total energy = 2277.2780 kcal/mol (2270.7219 without restraints) Performing minimization step: 4475. Total energy = 2276.9210 kcal/mol (2270.3646 without restraints) Performing minimization step: 4476. Total energy = 2276.5641 kcal/mol (2270.0072 without restraints) Performing minimization step: 4477. Total energy = 2276.2075 kcal/mol (2269.6501 without restraints) Performing minimization step: 4478. Total energy = 2275.8514 kcal/mol (2269.2935 without restraints) Performing minimization step: 4479. Total energy = 2275.4955 kcal/mol (2268.9373 without restraints) Performing minimization step: 4480. Total energy = 2275.1398 kcal/mol (2268.5810 without restraints) Performing minimization step: 4481. Total energy = 2274.7845 kcal/mol (2268.2252 without restraints) Performing minimization step: 4482. Total energy = 2274.4291 kcal/mol (2267.8694 without restraints) Performing minimization step: 4483. Total energy = 2274.0740 kcal/mol (2267.5138 without restraints) Performing minimization step: 4484. Total energy = 2273.7193 kcal/mol (2267.1586 without restraints) Performing minimization step: 4485. Total energy = 2273.3651 kcal/mol (2266.8039 without restraints) Performing minimization step: 4486. Total energy = 2273.0115 kcal/mol (2266.4498 without restraints) Performing minimization step: 4487. Total energy = 2272.6581 kcal/mol (2266.0961 without restraints) Performing minimization step: 4488. Total energy = 2272.3049 kcal/mol (2265.7423 without restraints) Performing minimization step: 4489. Total energy = 2271.9514 kcal/mol (2265.3883 without restraints) Performing minimization step: 4490. Total energy = 2271.5983 kcal/mol (2265.0347 without restraints) Performing minimization step: 4491. Total energy = 2271.2453 kcal/mol (2264.6813 without restraints) Performing minimization step: 4492. Total energy = 2270.8928 kcal/mol (2264.3282 without restraints) Performing minimization step: 4493. Total energy = 2270.5404 kcal/mol (2263.9753 without restraints) Performing minimization step: 4494. Total energy = 2270.1882 kcal/mol (2263.6227 without restraints) Performing minimization step: 4495. Total energy = 2269.8362 kcal/mol (2263.2702 without restraints) Performing minimization step: 4496. Total energy = 2269.4848 kcal/mol (2262.9183 without restraints) Performing minimization step: 4497. Total energy = 2269.1336 kcal/mol (2262.5668 without restraints) Performing minimization step: 4498. Total energy = 2268.7835 kcal/mol (2262.2161 without restraints) Performing minimization step: 4499. Total energy = 2268.4326 kcal/mol (2261.8647 without restraints) Performing minimization step: 4500. Total energy = 2268.0822 kcal/mol (2261.5137 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 2267.7317 kcal/mol (2261.1628 without restraints) Performing minimization step: 4502. Total energy = 2267.3816 kcal/mol (2260.8121 without restraints) Performing minimization step: 4503. Total energy = 2267.0318 kcal/mol (2260.4619 without restraints) Performing minimization step: 4504. Total energy = 2266.6821 kcal/mol (2260.1119 without restraints) Performing minimization step: 4505. Total energy = 2266.3328 kcal/mol (2259.7620 without restraints) Performing minimization step: 4506. Total energy = 2265.9832 kcal/mol (2259.4120 without restraints) Performing minimization step: 4507. Total energy = 2265.6348 kcal/mol (2259.0630 without restraints) Performing minimization step: 4508. Total energy = 2265.2860 kcal/mol (2258.7138 without restraints) Performing minimization step: 4509. Total energy = 2264.9375 kcal/mol (2258.3647 without restraints) Performing minimization step: 4510. Total energy = 2264.5888 kcal/mol (2258.0155 without restraints) Performing minimization step: 4511. Total energy = 2264.2407 kcal/mol (2257.6669 without restraints) Performing minimization step: 4512. Total energy = 2263.8927 kcal/mol (2257.3184 without restraints) Performing minimization step: 4513. Total energy = 2263.5448 kcal/mol (2256.9701 without restraints) Performing minimization step: 4514. Total energy = 2263.1975 kcal/mol (2256.6222 without restraints) Performing minimization step: 4515. Total energy = 2262.8501 kcal/mol (2256.2743 without restraints) Performing minimization step: 4516. Total energy = 2262.5030 kcal/mol (2255.9268 without restraints) Performing minimization step: 4517. Total energy = 2262.1562 kcal/mol (2255.5795 without restraints) Performing minimization step: 4518. Total energy = 2261.8103 kcal/mol (2255.2331 without restraints) Performing minimization step: 4519. Total energy = 2261.4642 kcal/mol (2254.8865 without restraints) Performing minimization step: 4520. Total energy = 2261.1180 kcal/mol (2254.5398 without restraints) Performing minimization step: 4521. Total energy = 2260.7720 kcal/mol (2254.1933 without restraints) Performing minimization step: 4522. Total energy = 2260.4266 kcal/mol (2253.8475 without restraints) Performing minimization step: 4523. Total energy = 2260.0812 kcal/mol (2253.5016 without restraints) Performing minimization step: 4524. Total energy = 2259.7360 kcal/mol (2253.1558 without restraints) Performing minimization step: 4525. Total energy = 2259.3911 kcal/mol (2252.8104 without restraints) Performing minimization step: 4526. Total energy = 2259.0468 kcal/mol (2252.4657 without restraints) Performing minimization step: 4527. Total energy = 2258.7022 kcal/mol (2252.1205 without restraints) Performing minimization step: 4528. Total energy = 2258.3579 kcal/mol (2251.7758 without restraints) Performing minimization step: 4529. Total energy = 2258.0141 kcal/mol (2251.4315 without restraints) Performing minimization step: 4530. Total energy = 2257.6704 kcal/mol (2251.0873 without restraints) Performing minimization step: 4531. Total energy = 2257.3268 kcal/mol (2250.7432 without restraints) Performing minimization step: 4532. Total energy = 2256.9833 kcal/mol (2250.3992 without restraints) Performing minimization step: 4533. Total energy = 2256.6400 kcal/mol (2250.0554 without restraints) Performing minimization step: 4534. Total energy = 2256.2969 kcal/mol (2249.7118 without restraints) Performing minimization step: 4535. Total energy = 2255.9540 kcal/mol (2249.3684 without restraints) Performing minimization step: 4536. Total energy = 2255.6113 kcal/mol (2249.0252 without restraints) Performing minimization step: 4537. Total energy = 2255.2690 kcal/mol (2248.6824 without restraints) Performing minimization step: 4538. Total energy = 2254.9272 kcal/mol (2248.3402 without restraints) Performing minimization step: 4539. Total energy = 2254.5853 kcal/mol (2247.9977 without restraints) Performing minimization step: 4540. Total energy = 2254.2437 kcal/mol (2247.6556 without restraints) Performing minimization step: 4541. Total energy = 2253.9025 kcal/mol (2247.3140 without restraints) Performing minimization step: 4542. Total energy = 2253.5618 kcal/mol (2246.9728 without restraints) Performing minimization step: 4543. Total energy = 2253.2208 kcal/mol (2246.6314 without restraints) Performing minimization step: 4544. Total energy = 2252.8802 kcal/mol (2246.2901 without restraints) Performing minimization step: 4545. Total energy = 2252.5394 kcal/mol (2245.9488 without restraints) Performing minimization step: 4546. Total energy = 2252.1989 kcal/mol (2245.6079 without restraints) Performing minimization step: 4547. Total energy = 2251.8589 kcal/mol (2245.2674 without restraints) Performing minimization step: 4548. Total energy = 2251.5192 kcal/mol (2244.9272 without restraints) Performing minimization step: 4549. Total energy = 2251.1795 kcal/mol (2244.5870 without restraints) Performing minimization step: 4550. Total energy = 2250.8398 kcal/mol (2244.2468 without restraints) Performing minimization step: 4551. Total energy = 2250.5004 kcal/mol (2243.9068 without restraints) Performing minimization step: 4552. Total energy = 2250.1615 kcal/mol (2243.5676 without restraints) Performing minimization step: 4553. Total energy = 2249.8225 kcal/mol (2243.2280 without restraints) Performing minimization step: 4554. Total energy = 2249.4839 kcal/mol (2242.8889 without restraints) Performing minimization step: 4555. Total energy = 2249.1453 kcal/mol (2242.5498 without restraints) Performing minimization step: 4556. Total energy = 2248.8072 kcal/mol (2242.2113 without restraints) Performing minimization step: 4557. Total energy = 2248.4689 kcal/mol (2241.8723 without restraints) Performing minimization step: 4558. Total energy = 2248.1310 kcal/mol (2241.5340 without restraints) Performing minimization step: 4559. Total energy = 2247.7935 kcal/mol (2241.1961 without restraints) Performing minimization step: 4560. Total energy = 2247.4559 kcal/mol (2240.8579 without restraints) Performing minimization step: 4561. Total energy = 2247.1189 kcal/mol (2240.5204 without restraints) Performing minimization step: 4562. Total energy = 2246.7821 kcal/mol (2240.1834 without restraints) Performing minimization step: 4563. Total energy = 2246.4451 kcal/mol (2239.8456 without restraints) Performing minimization step: 4564. Total energy = 2246.1085 kcal/mol (2239.5085 without restraints) Performing minimization step: 4565. Total energy = 2245.7722 kcal/mol (2239.1718 without restraints) Performing minimization step: 4566. Total energy = 2245.4362 kcal/mol (2238.8353 without restraints) Performing minimization step: 4567. Total energy = 2245.1003 kcal/mol (2238.4988 without restraints) Performing minimization step: 4568. Total energy = 2244.7642 kcal/mol (2238.1620 without restraints) Performing minimization step: 4569. Total energy = 2244.4285 kcal/mol (2237.8260 without restraints) Performing minimization step: 4570. Total energy = 2244.0928 kcal/mol (2237.4898 without restraints) Performing minimization step: 4571. Total energy = 2243.7576 kcal/mol (2237.1541 without restraints) Performing minimization step: 4572. Total energy = 2243.4226 kcal/mol (2236.8185 without restraints) Performing minimization step: 4573. Total energy = 2243.0878 kcal/mol (2236.4833 without restraints) Performing minimization step: 4574. Total energy = 2242.7531 kcal/mol (2236.1481 without restraints) Performing minimization step: 4575. Total energy = 2242.4187 kcal/mol (2235.8132 without restraints) Performing minimization step: 4576. Total energy = 2242.0849 kcal/mol (2235.4791 without restraints) Performing minimization step: 4577. Total energy = 2241.7510 kcal/mol (2235.1445 without restraints) Performing minimization step: 4578. Total energy = 2241.4172 kcal/mol (2234.8102 without restraints) Performing minimization step: 4579. Total energy = 2241.0835 kcal/mol (2234.4759 without restraints) Performing minimization step: 4580. Total energy = 2240.7500 kcal/mol (2234.1419 without restraints) Performing minimization step: 4581. Total energy = 2240.4169 kcal/mol (2233.8084 without restraints) Performing minimization step: 4582. Total energy = 2240.0841 kcal/mol (2233.4751 without restraints) Performing minimization step: 4583. Total energy = 2239.7514 kcal/mol (2233.1419 without restraints) Performing minimization step: 4584. Total energy = 2239.4187 kcal/mol (2232.8087 without restraints) Performing minimization step: 4585. Total energy = 2239.0862 kcal/mol (2232.4756 without restraints) Performing minimization step: 4586. Total energy = 2238.7536 kcal/mol (2232.1424 without restraints) Performing minimization step: 4587. Total energy = 2238.4217 kcal/mol (2231.8103 without restraints) Performing minimization step: 4588. Total energy = 2238.0897 kcal/mol (2231.4777 without restraints) Performing minimization step: 4589. Total energy = 2237.7578 kcal/mol (2231.1452 without restraints) Performing minimization step: 4590. Total energy = 2237.4268 kcal/mol (2230.8137 without restraints) Performing minimization step: 4591. Total energy = 2237.0952 kcal/mol (2230.4816 without restraints) Performing minimization step: 4592. Total energy = 2236.7640 kcal/mol (2230.1500 without restraints) Performing minimization step: 4593. Total energy = 2236.4329 kcal/mol (2229.8183 without restraints) Performing minimization step: 4594. Total energy = 2236.1022 kcal/mol (2229.4871 without restraints) Performing minimization step: 4595. Total energy = 2235.7714 kcal/mol (2229.1558 without restraints) Performing minimization step: 4596. Total energy = 2235.4412 kcal/mol (2228.8251 without restraints) Performing minimization step: 4597. Total energy = 2235.1108 kcal/mol (2228.4942 without restraints) Performing minimization step: 4598. Total energy = 2234.7805 kcal/mol (2228.1634 without restraints) Performing minimization step: 4599. Total energy = 2234.4511 kcal/mol (2227.8336 without restraints) Performing minimization step: 4600. Total energy = 2234.1217 kcal/mol (2227.5038 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 2233.7922 kcal/mol (2227.1736 without restraints) Performing minimization step: 4602. Total energy = 2233.4629 kcal/mol (2226.8438 without restraints) Performing minimization step: 4603. Total energy = 2233.1343 kcal/mol (2226.5146 without restraints) Performing minimization step: 4604. Total energy = 2232.8051 kcal/mol (2226.1850 without restraints) Performing minimization step: 4605. Total energy = 2232.4762 kcal/mol (2225.8555 without restraints) Performing minimization step: 4606. Total energy = 2232.1474 kcal/mol (2225.5263 without restraints) Performing minimization step: 4607. Total energy = 2231.8191 kcal/mol (2225.1974 without restraints) Performing minimization step: 4608. Total energy = 2231.4906 kcal/mol (2224.8685 without restraints) Performing minimization step: 4609. Total energy = 2231.1624 kcal/mol (2224.5397 without restraints) Performing minimization step: 4610. Total energy = 2230.8344 kcal/mol (2224.2112 without restraints) Performing minimization step: 4611. Total energy = 2230.5072 kcal/mol (2223.8835 without restraints) Performing minimization step: 4612. Total energy = 2230.1793 kcal/mol (2223.5551 without restraints) Performing minimization step: 4613. Total energy = 2229.8520 kcal/mol (2223.2273 without restraints) Performing minimization step: 4614. Total energy = 2229.5248 kcal/mol (2222.8997 without restraints) Performing minimization step: 4615. Total energy = 2229.1980 kcal/mol (2222.5725 without restraints) Performing minimization step: 4616. Total energy = 2228.8713 kcal/mol (2222.2450 without restraints) Performing minimization step: 4617. Total energy = 2228.5445 kcal/mol (2221.9178 without restraints) Performing minimization step: 4618. Total energy = 2228.2182 kcal/mol (2221.5909 without restraints) Performing minimization step: 4619. Total energy = 2227.8921 kcal/mol (2221.2645 without restraints) Performing minimization step: 4620. Total energy = 2227.5665 kcal/mol (2220.9382 without restraints) Performing minimization step: 4621. Total energy = 2227.2404 kcal/mol (2220.6117 without restraints) Performing minimization step: 4622. Total energy = 2226.9145 kcal/mol (2220.2853 without restraints) Performing minimization step: 4623. Total energy = 2226.5892 kcal/mol (2219.9594 without restraints) Performing minimization step: 4624. Total energy = 2226.2638 kcal/mol (2219.6335 without restraints) Performing minimization step: 4625. Total energy = 2225.9384 kcal/mol (2219.3076 without restraints) Performing minimization step: 4626. Total energy = 2225.6131 kcal/mol (2218.9817 without restraints) Performing minimization step: 4627. Total energy = 2225.2881 kcal/mol (2218.6564 without restraints) Performing minimization step: 4628. Total energy = 2224.9634 kcal/mol (2218.3311 without restraints) Performing minimization step: 4629. Total energy = 2224.6391 kcal/mol (2218.0063 without restraints) Performing minimization step: 4630. Total energy = 2224.3147 kcal/mol (2217.6814 without restraints) Performing minimization step: 4631. Total energy = 2223.9906 kcal/mol (2217.3567 without restraints) Performing minimization step: 4632. Total energy = 2223.6665 kcal/mol (2217.0321 without restraints) Performing minimization step: 4633. Total energy = 2223.3425 kcal/mol (2216.7076 without restraints) Performing minimization step: 4634. Total energy = 2223.0191 kcal/mol (2216.3837 without restraints) Performing minimization step: 4635. Total energy = 2222.6955 kcal/mol (2216.0596 without restraints) Performing minimization step: 4636. Total energy = 2222.3720 kcal/mol (2215.7356 without restraints) Performing minimization step: 4637. Total energy = 2222.0487 kcal/mol (2215.4117 without restraints) Performing minimization step: 4638. Total energy = 2221.7255 kcal/mol (2215.0881 without restraints) Performing minimization step: 4639. Total energy = 2221.4026 kcal/mol (2214.7646 without restraints) Performing minimization step: 4640. Total energy = 2221.0799 kcal/mol (2214.4415 without restraints) Performing minimization step: 4641. Total energy = 2220.7574 kcal/mol (2214.1184 without restraints) Performing minimization step: 4642. Total energy = 2220.4351 kcal/mol (2213.7958 without restraints) Performing minimization step: 4643. Total energy = 2220.1135 kcal/mol (2213.4736 without restraints) Performing minimization step: 4644. Total energy = 2219.7914 kcal/mol (2213.1510 without restraints) Performing minimization step: 4645. Total energy = 2219.4697 kcal/mol (2212.8288 without restraints) Performing minimization step: 4646. Total energy = 2219.1483 kcal/mol (2212.5068 without restraints) Performing minimization step: 4647. Total energy = 2218.8271 kcal/mol (2212.1852 without restraints) Performing minimization step: 4648. Total energy = 2218.5058 kcal/mol (2211.8633 without restraints) Performing minimization step: 4649. Total energy = 2218.1846 kcal/mol (2211.5416 without restraints) Performing minimization step: 4650. Total energy = 2217.8635 kcal/mol (2211.2200 without restraints) Performing minimization step: 4651. Total energy = 2217.5427 kcal/mol (2210.8986 without restraints) Performing minimization step: 4652. Total energy = 2217.2221 kcal/mol (2210.5776 without restraints) Performing minimization step: 4653. Total energy = 2216.9014 kcal/mol (2210.2564 without restraints) Performing minimization step: 4654. Total energy = 2216.5811 kcal/mol (2209.9356 without restraints) Performing minimization step: 4655. Total energy = 2216.2611 kcal/mol (2209.6151 without restraints) Performing minimization step: 4656. Total energy = 2215.9412 kcal/mol (2209.2946 without restraints) Performing minimization step: 4657. Total energy = 2215.6213 kcal/mol (2208.9742 without restraints) Performing minimization step: 4658. Total energy = 2215.3018 kcal/mol (2208.6542 without restraints) Performing minimization step: 4659. Total energy = 2214.9822 kcal/mol (2208.3341 without restraints) Performing minimization step: 4660. Total energy = 2214.6631 kcal/mol (2208.0146 without restraints) Performing minimization step: 4661. Total energy = 2214.3438 kcal/mol (2207.6946 without restraints) Performing minimization step: 4662. Total energy = 2214.0247 kcal/mol (2207.3751 without restraints) Performing minimization step: 4663. Total energy = 2213.7064 kcal/mol (2207.0562 without restraints) Performing minimization step: 4664. Total energy = 2213.3877 kcal/mol (2206.7370 without restraints) Performing minimization step: 4665. Total energy = 2213.0694 kcal/mol (2206.4182 without restraints) Performing minimization step: 4666. Total energy = 2212.7510 kcal/mol (2206.0992 without restraints) Performing minimization step: 4667. Total energy = 2212.4327 kcal/mol (2205.7805 without restraints) Performing minimization step: 4668. Total energy = 2212.1152 kcal/mol (2205.4625 without restraints) Performing minimization step: 4669. Total energy = 2211.7973 kcal/mol (2205.1441 without restraints) Performing minimization step: 4670. Total energy = 2211.4798 kcal/mol (2204.8260 without restraints) Performing minimization step: 4671. Total energy = 2211.1622 kcal/mol (2204.5080 without restraints) Performing minimization step: 4672. Total energy = 2210.8450 kcal/mol (2204.1902 without restraints) Performing minimization step: 4673. Total energy = 2210.5280 kcal/mol (2203.8727 without restraints) Performing minimization step: 4674. Total energy = 2210.2111 kcal/mol (2203.5553 without restraints) Performing minimization step: 4675. Total energy = 2209.8942 kcal/mol (2203.2379 without restraints) Performing minimization step: 4676. Total energy = 2209.5781 kcal/mol (2202.9218 without restraints) Performing minimization step: 4677. Total energy = 2209.2623 kcal/mol (2202.6051 without restraints) Performing minimization step: 4678. Total energy = 2208.9460 kcal/mol (2202.2881 without restraints) Performing minimization step: 4679. Total energy = 2208.6298 kcal/mol (2201.9714 without restraints) Performing minimization step: 4680. Total energy = 2208.3139 kcal/mol (2201.6550 without restraints) Performing minimization step: 4681. Total energy = 2207.9983 kcal/mol (2201.3390 without restraints) Performing minimization step: 4682. Total energy = 2207.6827 kcal/mol (2201.0228 without restraints) Performing minimization step: 4683. Total energy = 2207.3673 kcal/mol (2200.7069 without restraints) Performing minimization step: 4684. Total energy = 2207.0525 kcal/mol (2200.3916 without restraints) Performing minimization step: 4685. Total energy = 2206.7374 kcal/mol (2200.0759 without restraints) Performing minimization step: 4686. Total energy = 2206.4217 kcal/mol (2199.7598 without restraints) Performing minimization step: 4687. Total energy = 2206.1068 kcal/mol (2199.4443 without restraints) Performing minimization step: 4688. Total energy = 2205.7918 kcal/mol (2199.1290 without restraints) Performing minimization step: 4689. Total energy = 2205.4773 kcal/mol (2198.8138 without restraints) Performing minimization step: 4690. Total energy = 2205.1629 kcal/mol (2198.4988 without restraints) Performing minimization step: 4691. Total energy = 2204.8488 kcal/mol (2198.1844 without restraints) Performing minimization step: 4692. Total energy = 2204.5348 kcal/mol (2197.8698 without restraints) Performing minimization step: 4693. Total energy = 2204.2213 kcal/mol (2197.5557 without restraints) Performing minimization step: 4694. Total energy = 2203.9078 kcal/mol (2197.2417 without restraints) Performing minimization step: 4695. Total energy = 2203.5943 kcal/mol (2196.9277 without restraints) Performing minimization step: 4696. Total energy = 2203.2810 kcal/mol (2196.6139 without restraints) Performing minimization step: 4697. Total energy = 2202.9678 kcal/mol (2196.3004 without restraints) Performing minimization step: 4698. Total energy = 2202.6548 kcal/mol (2195.9867 without restraints) Performing minimization step: 4699. Total energy = 2202.3416 kcal/mol (2195.6730 without restraints) Performing minimization step: 4700. Total energy = 2202.0285 kcal/mol (2195.3594 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 2201.7157 kcal/mol (2195.0461 without restraints) Performing minimization step: 4702. Total energy = 2201.4030 kcal/mol (2194.7327 without restraints) Performing minimization step: 4703. Total energy = 2201.0905 kcal/mol (2194.4199 without restraints) Performing minimization step: 4704. Total energy = 2200.7782 kcal/mol (2194.1070 without restraints) Performing minimization step: 4705. Total energy = 2200.4663 kcal/mol (2193.7947 without restraints) Performing minimization step: 4706. Total energy = 2200.1544 kcal/mol (2193.4822 without restraints) Performing minimization step: 4707. Total energy = 2199.8426 kcal/mol (2193.1699 without restraints) Performing minimization step: 4708. Total energy = 2199.5309 kcal/mol (2192.8577 without restraints) Performing minimization step: 4709. Total energy = 2199.2199 kcal/mol (2192.5461 without restraints) Performing minimization step: 4710. Total energy = 2198.9087 kcal/mol (2192.2344 without restraints) Performing minimization step: 4711. Total energy = 2198.5977 kcal/mol (2191.9231 without restraints) Performing minimization step: 4712. Total energy = 2198.2866 kcal/mol (2191.6113 without restraints) Performing minimization step: 4713. Total energy = 2197.9761 kcal/mol (2191.3003 without restraints) Performing minimization step: 4714. Total energy = 2197.6654 kcal/mol (2190.9891 without restraints) Performing minimization step: 4715. Total energy = 2197.3553 kcal/mol (2190.6786 without restraints) Performing minimization step: 4716. Total energy = 2197.0452 kcal/mol (2190.3678 without restraints) Performing minimization step: 4717. Total energy = 2196.7357 kcal/mol (2190.0578 without restraints) Performing minimization step: 4718. Total energy = 2196.4252 kcal/mol (2189.7468 without restraints) Performing minimization step: 4719. Total energy = 2196.1152 kcal/mol (2189.4363 without restraints) Performing minimization step: 4720. Total energy = 2195.8057 kcal/mol (2189.1265 without restraints) Performing minimization step: 4721. Total energy = 2195.4961 kcal/mol (2188.8163 without restraints) Performing minimization step: 4722. Total energy = 2195.1869 kcal/mol (2188.5065 without restraints) Performing minimization step: 4723. Total energy = 2194.8775 kcal/mol (2188.1966 without restraints) Performing minimization step: 4724. Total energy = 2194.5688 kcal/mol (2187.8875 without restraints) Performing minimization step: 4725. Total energy = 2194.2598 kcal/mol (2187.5779 without restraints) Performing minimization step: 4726. Total energy = 2193.9514 kcal/mol (2187.2690 without restraints) Performing minimization step: 4727. Total energy = 2193.6431 kcal/mol (2186.9601 without restraints) Performing minimization step: 4728. Total energy = 2193.3348 kcal/mol (2186.6513 without restraints) Performing minimization step: 4729. Total energy = 2193.0265 kcal/mol (2186.3425 without restraints) Performing minimization step: 4730. Total energy = 2192.7184 kcal/mol (2186.0341 without restraints) Performing minimization step: 4731. Total energy = 2192.4105 kcal/mol (2185.7254 without restraints) Performing minimization step: 4732. Total energy = 2192.1024 kcal/mol (2185.4169 without restraints) Performing minimization step: 4733. Total energy = 2191.7946 kcal/mol (2185.1085 without restraints) Performing minimization step: 4734. Total energy = 2191.4877 kcal/mol (2184.8012 without restraints) Performing minimization step: 4735. Total energy = 2191.1804 kcal/mol (2184.4933 without restraints) Performing minimization step: 4736. Total energy = 2190.8731 kcal/mol (2184.1855 without restraints) Performing minimization step: 4737. Total energy = 2190.5656 kcal/mol (2183.8775 without restraints) Performing minimization step: 4738. Total energy = 2190.2585 kcal/mol (2183.5699 without restraints) Performing minimization step: 4739. Total energy = 2189.9518 kcal/mol (2183.2628 without restraints) Performing minimization step: 4740. Total energy = 2189.6450 kcal/mol (2182.9554 without restraints) Performing minimization step: 4741. Total energy = 2189.3385 kcal/mol (2182.6484 without restraints) Performing minimization step: 4742. Total energy = 2189.0320 kcal/mol (2182.3413 without restraints) Performing minimization step: 4743. Total energy = 2188.7262 kcal/mol (2182.0352 without restraints) Performing minimization step: 4744. Total energy = 2188.4205 kcal/mol (2181.7288 without restraints) Performing minimization step: 4745. Total energy = 2188.1144 kcal/mol (2181.4222 without restraints) Performing minimization step: 4746. Total energy = 2187.8085 kcal/mol (2181.1158 without restraints) Performing minimization step: 4747. Total energy = 2187.5029 kcal/mol (2180.8097 without restraints) Performing minimization step: 4748. Total energy = 2187.1977 kcal/mol (2180.5040 without restraints) Performing minimization step: 4749. Total energy = 2186.8923 kcal/mol (2180.1980 without restraints) Performing minimization step: 4750. Total energy = 2186.5872 kcal/mol (2179.8926 without restraints) Performing minimization step: 4751. Total energy = 2186.2823 kcal/mol (2179.5872 without restraints) Performing minimization step: 4752. Total energy = 2185.9775 kcal/mol (2179.2818 without restraints) Performing minimization step: 4753. Total energy = 2185.6726 kcal/mol (2178.9762 without restraints) Performing minimization step: 4754. Total energy = 2185.3680 kcal/mol (2178.6714 without restraints) Performing minimization step: 4755. Total energy = 2185.0636 kcal/mol (2178.3664 without restraints) Performing minimization step: 4756. Total energy = 2184.7592 kcal/mol (2178.0614 without restraints) Performing minimization step: 4757. Total energy = 2184.4553 kcal/mol (2177.7569 without restraints) Performing minimization step: 4758. Total energy = 2184.1514 kcal/mol (2177.4526 without restraints) Performing minimization step: 4759. Total energy = 2183.8478 kcal/mol (2177.1485 without restraints) Performing minimization step: 4760. Total energy = 2183.5442 kcal/mol (2176.8444 without restraints) Performing minimization step: 4761. Total energy = 2183.2406 kcal/mol (2176.5402 without restraints) Performing minimization step: 4762. Total energy = 2182.9368 kcal/mol (2176.2359 without restraints) Performing minimization step: 4763. Total energy = 2182.6333 kcal/mol (2175.9319 without restraints) Performing minimization step: 4764. Total energy = 2182.3300 kcal/mol (2175.6281 without restraints) Performing minimization step: 4765. Total energy = 2182.0267 kcal/mol (2175.3243 without restraints) Performing minimization step: 4766. Total energy = 2181.7237 kcal/mol (2175.0207 without restraints) Performing minimization step: 4767. Total energy = 2181.4209 kcal/mol (2174.7174 without restraints) Performing minimization step: 4768. Total energy = 2181.1182 kcal/mol (2174.4141 without restraints) Performing minimization step: 4769. Total energy = 2180.8157 kcal/mol (2174.1113 without restraints) Performing minimization step: 4770. Total energy = 2180.5136 kcal/mol (2173.8086 without restraints) Performing minimization step: 4771. Total energy = 2180.2114 kcal/mol (2173.5060 without restraints) Performing minimization step: 4772. Total energy = 2179.9094 kcal/mol (2173.2034 without restraints) Performing minimization step: 4773. Total energy = 2179.6072 kcal/mol (2172.9007 without restraints) Performing minimization step: 4774. Total energy = 2179.3055 kcal/mol (2172.5985 without restraints) Performing minimization step: 4775. Total energy = 2179.0040 kcal/mol (2172.2964 without restraints) Performing minimization step: 4776. Total energy = 2178.7026 kcal/mol (2171.9946 without restraints) Performing minimization step: 4777. Total energy = 2178.4013 kcal/mol (2171.6927 without restraints) Performing minimization step: 4778. Total energy = 2178.1005 kcal/mol (2171.3914 without restraints) Performing minimization step: 4779. Total energy = 2177.7996 kcal/mol (2171.0900 without restraints) Performing minimization step: 4780. Total energy = 2177.4987 kcal/mol (2170.7886 without restraints) Performing minimization step: 4781. Total energy = 2177.1979 kcal/mol (2170.4873 without restraints) Performing minimization step: 4782. Total energy = 2176.8972 kcal/mol (2170.1861 without restraints) Performing minimization step: 4783. Total energy = 2176.5971 kcal/mol (2169.8855 without restraints) Performing minimization step: 4784. Total energy = 2176.2967 kcal/mol (2169.5847 without restraints) Performing minimization step: 4785. Total energy = 2175.9968 kcal/mol (2169.2842 without restraints) Performing minimization step: 4786. Total energy = 2175.6967 kcal/mol (2168.9835 without restraints) Performing minimization step: 4787. Total energy = 2175.3969 kcal/mol (2168.6833 without restraints) Performing minimization step: 4788. Total energy = 2175.0974 kcal/mol (2168.3832 without restraints) Performing minimization step: 4789. Total energy = 2174.7981 kcal/mol (2168.0834 without restraints) Performing minimization step: 4790. Total energy = 2174.4987 kcal/mol (2167.7835 without restraints) Performing minimization step: 4791. Total energy = 2174.1991 kcal/mol (2167.4834 without restraints) Performing minimization step: 4792. Total energy = 2173.9000 kcal/mol (2167.1838 without restraints) Performing minimization step: 4793. Total energy = 2173.6013 kcal/mol (2166.8846 without restraints) Performing minimization step: 4794. Total energy = 2173.3025 kcal/mol (2166.5853 without restraints) Performing minimization step: 4795. Total energy = 2173.0040 kcal/mol (2166.2862 without restraints) Performing minimization step: 4796. Total energy = 2172.7055 kcal/mol (2165.9873 without restraints) Performing minimization step: 4797. Total energy = 2172.4071 kcal/mol (2165.6884 without restraints) Performing minimization step: 4798. Total energy = 2172.1087 kcal/mol (2165.3893 without restraints) Performing minimization step: 4799. Total energy = 2171.8107 kcal/mol (2165.0911 without restraints) Performing minimization step: 4800. Total energy = 2171.5125 kcal/mol (2164.7920 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 2171.2143 kcal/mol (2164.4935 without restraints) Performing minimization step: 4802. Total energy = 2170.9167 kcal/mol (2164.1955 without restraints) Performing minimization step: 4803. Total energy = 2170.6193 kcal/mol (2163.8975 without restraints) Performing minimization step: 4804. Total energy = 2170.3219 kcal/mol (2163.5998 without restraints) Performing minimization step: 4805. Total energy = 2170.0244 kcal/mol (2163.3016 without restraints) Performing minimization step: 4806. Total energy = 2169.7271 kcal/mol (2163.0037 without restraints) Performing minimization step: 4807. Total energy = 2169.4299 kcal/mol (2162.7059 without restraints) Performing minimization step: 4808. Total energy = 2169.1328 kcal/mol (2162.4084 without restraints) Performing minimization step: 4809. Total energy = 2168.8355 kcal/mol (2162.1105 without restraints) Performing minimization step: 4810. Total energy = 2168.5390 kcal/mol (2161.8137 without restraints) Performing minimization step: 4811. Total energy = 2168.2429 kcal/mol (2161.5173 without restraints) Performing minimization step: 4812. Total energy = 2167.9469 kcal/mol (2161.2205 without restraints) Performing minimization step: 4813. Total energy = 2167.6507 kcal/mol (2160.9239 without restraints) Performing minimization step: 4814. Total energy = 2167.3547 kcal/mol (2160.6273 without restraints) Performing minimization step: 4815. Total energy = 2167.0588 kcal/mol (2160.3309 without restraints) Performing minimization step: 4816. Total energy = 2166.7635 kcal/mol (2160.0351 without restraints) Performing minimization step: 4817. Total energy = 2166.4678 kcal/mol (2159.7389 without restraints) Performing minimization step: 4818. Total energy = 2166.1725 kcal/mol (2159.4432 without restraints) Performing minimization step: 4819. Total energy = 2165.8776 kcal/mol (2159.1480 without restraints) Performing minimization step: 4820. Total energy = 2165.5824 kcal/mol (2158.8520 without restraints) Performing minimization step: 4821. Total energy = 2165.2875 kcal/mol (2158.5565 without restraints) Performing minimization step: 4822. Total energy = 2164.9925 kcal/mol (2158.2612 without restraints) Performing minimization step: 4823. Total energy = 2164.6984 kcal/mol (2157.9664 without restraints) Performing minimization step: 4824. Total energy = 2164.4040 kcal/mol (2157.6715 without restraints) Performing minimization step: 4825. Total energy = 2164.1097 kcal/mol (2157.3767 without restraints) Performing minimization step: 4826. Total energy = 2163.8152 kcal/mol (2157.0817 without restraints) Performing minimization step: 4827. Total energy = 2163.5210 kcal/mol (2156.7869 without restraints) Performing minimization step: 4828. Total energy = 2163.2272 kcal/mol (2156.4927 without restraints) Performing minimization step: 4829. Total energy = 2162.9331 kcal/mol (2156.1981 without restraints) Performing minimization step: 4830. Total energy = 2162.6391 kcal/mol (2155.9036 without restraints) Performing minimization step: 4831. Total energy = 2162.3453 kcal/mol (2155.6093 without restraints) Performing minimization step: 4832. Total energy = 2162.0518 kcal/mol (2155.3153 without restraints) Performing minimization step: 4833. Total energy = 2161.7584 kcal/mol (2155.0215 without restraints) Performing minimization step: 4834. Total energy = 2161.4652 kcal/mol (2154.7276 without restraints) Performing minimization step: 4835. Total energy = 2161.1718 kcal/mol (2154.4338 without restraints) Performing minimization step: 4836. Total energy = 2160.8786 kcal/mol (2154.1401 without restraints) Performing minimization step: 4837. Total energy = 2160.5859 kcal/mol (2153.8468 without restraints) Performing minimization step: 4838. Total energy = 2160.2928 kcal/mol (2153.5532 without restraints) Performing minimization step: 4839. Total energy = 2160.0001 kcal/mol (2153.2600 without restraints) Performing minimization step: 4840. Total energy = 2159.7078 kcal/mol (2152.9672 without restraints) Performing minimization step: 4841. Total energy = 2159.4155 kcal/mol (2152.6745 without restraints) Performing minimization step: 4842. Total energy = 2159.1230 kcal/mol (2152.3814 without restraints) Performing minimization step: 4843. Total energy = 2158.8308 kcal/mol (2152.0887 without restraints) Performing minimization step: 4844. Total energy = 2158.5392 kcal/mol (2151.7968 without restraints) Performing minimization step: 4845. Total energy = 2158.2475 kcal/mol (2151.5044 without restraints) Performing minimization step: 4846. Total energy = 2157.9564 kcal/mol (2151.2128 without restraints) Performing minimization step: 4847. Total energy = 2157.6654 kcal/mol (2150.9215 without restraints) Performing minimization step: 4848. Total energy = 2157.3745 kcal/mol (2150.6298 without restraints) Performing minimization step: 4849. Total energy = 2157.0835 kcal/mol (2150.3386 without restraints) Performing minimization step: 4850. Total energy = 2156.7928 kcal/mol (2150.0471 without restraints) Performing minimization step: 4851. Total energy = 2156.5017 kcal/mol (2149.7556 without restraints) Performing minimization step: 4852. Total energy = 2156.2112 kcal/mol (2149.4645 without restraints) Performing minimization step: 4853. Total energy = 2155.9202 kcal/mol (2149.1730 without restraints) Performing minimization step: 4854. Total energy = 2155.6295 kcal/mol (2148.8819 without restraints) Performing minimization step: 4855. Total energy = 2155.3389 kcal/mol (2148.5906 without restraints) Performing minimization step: 4856. Total energy = 2155.0487 kcal/mol (2148.3000 without restraints) Performing minimization step: 4857. Total energy = 2154.7587 kcal/mol (2148.0095 without restraints) Performing minimization step: 4858. Total energy = 2154.4689 kcal/mol (2147.7194 without restraints) Performing minimization step: 4859. Total energy = 2154.1794 kcal/mol (2147.4292 without restraints) Performing minimization step: 4860. Total energy = 2153.8897 kcal/mol (2147.1390 without restraints) Performing minimization step: 4861. Total energy = 2153.6001 kcal/mol (2146.8492 without restraints) Performing minimization step: 4862. Total energy = 2153.3109 kcal/mol (2146.5593 without restraints) Performing minimization step: 4863. Total energy = 2153.0222 kcal/mol (2146.2702 without restraints) Performing minimization step: 4864. Total energy = 2152.7333 kcal/mol (2145.9806 without restraints) Performing minimization step: 4865. Total energy = 2152.4442 kcal/mol (2145.6910 without restraints) Performing minimization step: 4866. Total energy = 2152.1554 kcal/mol (2145.4017 without restraints) Performing minimization step: 4867. Total energy = 2151.8660 kcal/mol (2145.1119 without restraints) Performing minimization step: 4868. Total energy = 2151.5774 kcal/mol (2144.8228 without restraints) Performing minimization step: 4869. Total energy = 2151.2890 kcal/mol (2144.5340 without restraints) Performing minimization step: 4870. Total energy = 2151.0007 kcal/mol (2144.2450 without restraints) Performing minimization step: 4871. Total energy = 2150.7128 kcal/mol (2143.9566 without restraints) Performing minimization step: 4872. Total energy = 2150.4247 kcal/mol (2143.6679 without restraints) Performing minimization step: 4873. Total energy = 2150.1365 kcal/mol (2143.3792 without restraints) Performing minimization step: 4874. Total energy = 2149.8484 kcal/mol (2143.0907 without restraints) Performing minimization step: 4875. Total energy = 2149.5606 kcal/mol (2142.8024 without restraints) Performing minimization step: 4876. Total energy = 2149.2729 kcal/mol (2142.5143 without restraints) Performing minimization step: 4877. Total energy = 2148.9856 kcal/mol (2142.2264 without restraints) Performing minimization step: 4878. Total energy = 2148.6985 kcal/mol (2141.9389 without restraints) Performing minimization step: 4879. Total energy = 2148.4111 kcal/mol (2141.6509 without restraints) Performing minimization step: 4880. Total energy = 2148.1241 kcal/mol (2141.3634 without restraints) Performing minimization step: 4881. Total energy = 2147.8372 kcal/mol (2141.0761 without restraints) Performing minimization step: 4882. Total energy = 2147.5502 kcal/mol (2140.7885 without restraints) Performing minimization step: 4883. Total energy = 2147.2634 kcal/mol (2140.5012 without restraints) Performing minimization step: 4884. Total energy = 2146.9768 kcal/mol (2140.2141 without restraints) Performing minimization step: 4885. Total energy = 2146.6904 kcal/mol (2139.9272 without restraints) Performing minimization step: 4886. Total energy = 2146.4041 kcal/mol (2139.6404 without restraints) Performing minimization step: 4887. Total energy = 2146.1179 kcal/mol (2139.3537 without restraints) Performing minimization step: 4888. Total energy = 2145.8318 kcal/mol (2139.0671 without restraints) Performing minimization step: 4889. Total energy = 2145.5463 kcal/mol (2138.7811 without restraints) Performing minimization step: 4890. Total energy = 2145.2608 kcal/mol (2138.4951 without restraints) Performing minimization step: 4891. Total energy = 2144.9754 kcal/mol (2138.2093 without restraints) Performing minimization step: 4892. Total energy = 2144.6900 kcal/mol (2137.9233 without restraints) Performing minimization step: 4893. Total energy = 2144.4049 kcal/mol (2137.6377 without restraints) Performing minimization step: 4894. Total energy = 2144.1196 kcal/mol (2137.3519 without restraints) Performing minimization step: 4895. Total energy = 2143.8347 kcal/mol (2137.0665 without restraints) Performing minimization step: 4896. Total energy = 2143.5502 kcal/mol (2136.7818 without restraints) Performing minimization step: 4897. Total energy = 2143.2656 kcal/mol (2136.4964 without restraints) Performing minimization step: 4898. Total energy = 2142.9809 kcal/mol (2136.2112 without restraints) Performing minimization step: 4899. Total energy = 2142.6968 kcal/mol (2135.9266 without restraints) Performing minimization step: 4900. Total energy = 2142.4128 kcal/mol (2135.6421 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 2142.1287 kcal/mol (2135.3576 without restraints) Performing minimization step: 4902. Total energy = 2141.8445 kcal/mol (2135.0729 without restraints) Performing minimization step: 4903. Total energy = 2141.5609 kcal/mol (2134.7887 without restraints) Performing minimization step: 4904. Total energy = 2141.2769 kcal/mol (2134.5043 without restraints) Performing minimization step: 4905. Total energy = 2140.9931 kcal/mol (2134.2200 without restraints) Performing minimization step: 4906. Total energy = 2140.7095 kcal/mol (2133.9358 without restraints) Performing minimization step: 4907. Total energy = 2140.4262 kcal/mol (2133.6520 without restraints) Performing minimization step: 4908. Total energy = 2140.1430 kcal/mol (2133.3683 without restraints) Performing minimization step: 4909. Total energy = 2139.8600 kcal/mol (2133.0850 without restraints) Performing minimization step: 4910. Total energy = 2139.5773 kcal/mol (2132.8018 without restraints) Performing minimization step: 4911. Total energy = 2139.2945 kcal/mol (2132.5183 without restraints) Performing minimization step: 4912. Total energy = 2139.0116 kcal/mol (2132.2350 without restraints) Performing minimization step: 4913. Total energy = 2138.7290 kcal/mol (2131.9520 without restraints) Performing minimization step: 4914. Total energy = 2138.4468 kcal/mol (2131.6692 without restraints) Performing minimization step: 4915. Total energy = 2138.1642 kcal/mol (2131.3861 without restraints) Performing minimization step: 4916. Total energy = 2137.8820 kcal/mol (2131.1035 without restraints) Performing minimization step: 4917. Total energy = 2137.5999 kcal/mol (2130.8207 without restraints) Performing minimization step: 4918. Total energy = 2137.3180 kcal/mol (2130.5384 without restraints) Performing minimization step: 4919. Total energy = 2137.0361 kcal/mol (2130.2560 without restraints) Performing minimization step: 4920. Total energy = 2136.7543 kcal/mol (2129.9738 without restraints) Performing minimization step: 4921. Total energy = 2136.4732 kcal/mol (2129.6921 without restraints) Performing minimization step: 4922. Total energy = 2136.1919 kcal/mol (2129.4103 without restraints) Performing minimization step: 4923. Total energy = 2135.9103 kcal/mol (2129.1282 without restraints) Performing minimization step: 4924. Total energy = 2135.6292 kcal/mol (2128.8466 without restraints) Performing minimization step: 4925. Total energy = 2135.3481 kcal/mol (2128.5651 without restraints) Performing minimization step: 4926. Total energy = 2135.0674 kcal/mol (2128.2839 without restraints) Performing minimization step: 4927. Total energy = 2134.7872 kcal/mol (2128.0033 without restraints) Performing minimization step: 4928. Total energy = 2134.5066 kcal/mol (2127.7221 without restraints) Performing minimization step: 4929. Total energy = 2134.2263 kcal/mol (2127.4411 without restraints) Performing minimization step: 4930. Total energy = 2133.9459 kcal/mol (2127.1606 without restraints) Performing minimization step: 4931. Total energy = 2133.6657 kcal/mol (2126.8797 without restraints) Performing minimization step: 4932. Total energy = 2133.3862 kcal/mol (2126.5996 without restraints) Performing minimization step: 4933. Total energy = 2133.1061 kcal/mol (2126.3191 without restraints) Performing minimization step: 4934. Total energy = 2132.8261 kcal/mol (2126.0386 without restraints) Performing minimization step: 4935. Total energy = 2132.5455 kcal/mol (2125.7573 without restraints) Performing minimization step: 4936. Total energy = 2132.2658 kcal/mol (2125.4774 without restraints) Performing minimization step: 4937. Total energy = 2131.9865 kcal/mol (2125.1976 without restraints) Performing minimization step: 4938. Total energy = 2131.7071 kcal/mol (2124.9177 without restraints) Performing minimization step: 4939. Total energy = 2131.4279 kcal/mol (2124.6380 without restraints) Performing minimization step: 4940. Total energy = 2131.1486 kcal/mol (2124.3582 without restraints) Performing minimization step: 4941. Total energy = 2130.8697 kcal/mol (2124.0787 without restraints) Performing minimization step: 4942. Total energy = 2130.5911 kcal/mol (2123.7997 without restraints) Performing minimization step: 4943. Total energy = 2130.3128 kcal/mol (2123.5210 without restraints) Performing minimization step: 4944. Total energy = 2130.0344 kcal/mol (2123.2420 without restraints) Performing minimization step: 4945. Total energy = 2129.7565 kcal/mol (2122.9636 without restraints) Performing minimization step: 4946. Total energy = 2129.4781 kcal/mol (2122.6847 without restraints) Performing minimization step: 4947. Total energy = 2129.2001 kcal/mol (2122.4062 without restraints) Performing minimization step: 4948. Total energy = 2128.9222 kcal/mol (2122.1279 without restraints) Performing minimization step: 4949. Total energy = 2128.6445 kcal/mol (2121.8497 without restraints) Performing minimization step: 4950. Total energy = 2128.3670 kcal/mol (2121.5718 without restraints) Performing minimization step: 4951. Total energy = 2128.0897 kcal/mol (2121.2939 without restraints) Performing minimization step: 4952. Total energy = 2127.8122 kcal/mol (2121.0158 without restraints) Performing minimization step: 4953. Total energy = 2127.5349 kcal/mol (2120.7383 without restraints) Performing minimization step: 4954. Total energy = 2127.2577 kcal/mol (2120.4604 without restraints) Performing minimization step: 4955. Total energy = 2126.9806 kcal/mol (2120.1829 without restraints) Performing minimization step: 4956. Total energy = 2126.7040 kcal/mol (2119.9058 without restraints) Performing minimization step: 4957. Total energy = 2126.4273 kcal/mol (2119.6285 without restraints) Performing minimization step: 4958. Total energy = 2126.1506 kcal/mol (2119.3514 without restraints) Performing minimization step: 4959. Total energy = 2125.8740 kcal/mol (2119.0742 without restraints) Performing minimization step: 4960. Total energy = 2125.5975 kcal/mol (2118.7974 without restraints) Performing minimization step: 4961. Total energy = 2125.3218 kcal/mol (2118.5211 without restraints) Performing minimization step: 4962. Total energy = 2125.0458 kcal/mol (2118.2445 without restraints) Performing minimization step: 4963. Total energy = 2124.7699 kcal/mol (2117.9682 without restraints) Performing minimization step: 4964. Total energy = 2124.4939 kcal/mol (2117.6917 without restraints) Performing minimization step: 4965. Total energy = 2124.2180 kcal/mol (2117.4155 without restraints) Performing minimization step: 4966. Total energy = 2123.9426 kcal/mol (2117.1395 without restraints) Performing minimization step: 4967. Total energy = 2123.6672 kcal/mol (2116.8636 without restraints) Performing minimization step: 4968. Total energy = 2123.3917 kcal/mol (2116.5876 without restraints) Performing minimization step: 4969. Total energy = 2123.1164 kcal/mol (2116.3118 without restraints) Performing minimization step: 4970. Total energy = 2122.8415 kcal/mol (2116.0365 without restraints) Performing minimization step: 4971. Total energy = 2122.5670 kcal/mol (2115.7615 without restraints) Performing minimization step: 4972. Total energy = 2122.2920 kcal/mol (2115.4860 without restraints) Performing minimization step: 4973. Total energy = 2122.0168 kcal/mol (2115.2102 without restraints) Performing minimization step: 4974. Total energy = 2121.7420 kcal/mol (2114.9350 without restraints) Performing minimization step: 4975. Total energy = 2121.4676 kcal/mol (2114.6601 without restraints) Performing minimization step: 4976. Total energy = 2121.1934 kcal/mol (2114.3856 without restraints) Performing minimization step: 4977. Total energy = 2120.9194 kcal/mol (2114.1109 without restraints) Performing minimization step: 4978. Total energy = 2120.6456 kcal/mol (2113.8366 without restraints) Performing minimization step: 4979. Total energy = 2120.3718 kcal/mol (2113.5624 without restraints) Performing minimization step: 4980. Total energy = 2120.0980 kcal/mol (2113.2880 without restraints) Performing minimization step: 4981. Total energy = 2119.8247 kcal/mol (2113.0144 without restraints) Performing minimization step: 4982. Total energy = 2119.5511 kcal/mol (2112.7402 without restraints) Performing minimization step: 4983. Total energy = 2119.2778 kcal/mol (2112.4664 without restraints) Performing minimization step: 4984. Total energy = 2119.0043 kcal/mol (2112.1924 without restraints) Performing minimization step: 4985. Total energy = 2118.7308 kcal/mol (2111.9186 without restraints) Performing minimization step: 4986. Total energy = 2118.4577 kcal/mol (2111.6447 without restraints) Performing minimization step: 4987. Total energy = 2118.1844 kcal/mol (2111.3711 without restraints) Performing minimization step: 4988. Total energy = 2117.9114 kcal/mol (2111.0976 without restraints) Performing minimization step: 4989. Total energy = 2117.6387 kcal/mol (2110.8244 without restraints) Performing minimization step: 4990. Total energy = 2117.3662 kcal/mol (2110.5515 without restraints) Performing minimization step: 4991. Total energy = 2117.0941 kcal/mol (2110.2788 without restraints) Performing minimization step: 4992. Total energy = 2116.8218 kcal/mol (2110.0060 without restraints) Performing minimization step: 4993. Total energy = 2116.5493 kcal/mol (2109.7331 without restraints) Performing minimization step: 4994. Total energy = 2116.2774 kcal/mol (2109.4607 without restraints) Performing minimization step: 4995. Total energy = 2116.0056 kcal/mol (2109.1885 without restraints) Performing minimization step: 4996. Total energy = 2115.7342 kcal/mol (2108.9165 without restraints) Performing minimization step: 4997. Total energy = 2115.4628 kcal/mol (2108.6447 without restraints) Performing minimization step: 4998. Total energy = 2115.1912 kcal/mol (2108.3726 without restraints) Performing minimization step: 4999. Total energy = 2114.9199 kcal/mol (2108.1008 without restraints) Performing minimization step: 5000. Total energy = 2114.6488 kcal/mol (2107.8293 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/95b17bbd/tmp/ENST00000666628sim_refx/ENST00000666628sim_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to ENST00000666628sim_refx.pdb DONE!