============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6.pdb ============================================================================= Error: recognition of atom ATOM 19 'H5' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 20 'HO5 DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 24 1H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 25 2H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 47 C5M DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 51 HN3 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 52 1HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 53 2HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 54 3HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 81 'H5' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 85 1H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 86 2H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 114 'H5' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 118 1H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 119 2H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 144 'H5' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 148 1H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 149 2H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 176 'H5' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 180 1H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 181 2H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 203 C5M DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 207 HN3 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 208 1HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 209 2HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 210 3HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 238 'H5' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 242 1H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 243 2H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 270 'H5' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 274 1H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 275 2H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 302 'H5' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 306 1H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 307 2H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 329 C5M DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 333 HN3 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 334 1HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 335 2HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 336 3HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 358 C5M DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 362 HN3 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 363 1HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 364 2HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 365 3HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 390 'H5' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 394 1H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 395 2H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 420 'H5' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 424 1H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 425 2H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 450 'H5' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 454 1H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 455 2H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 483 'H5' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 487 1H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 488 2H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 515 'H5' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 519 1H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 520 2H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 547 'H5' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 551 1H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 552 2H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 580 'H5' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 584 1H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 585 2H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 612 'H5' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 616 1H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 617 2H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 642 'H5' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 646 1H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 647 2H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 675 'H5' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 679 1H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 680 2H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 705 'H5' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 709 1H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 710 2H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 735 'H5' DC A 24 ... failed. Atom erased. Error: recognition of atom ATOM 739 1H2' DC A 24 ... failed. Atom erased. Error: recognition of atom ATOM 740 2H2' DC A 24 ... failed. Atom erased. Error: recognition of atom ATOM 768 'H5' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 772 1H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 773 2H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 800 'H5' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 804 1H2' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 805 2H2' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 830 'H5' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 834 1H2' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 835 2H2' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 860 'H5' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 864 1H2' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 865 2H2' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 892 'H5' DA A 29 ... failed. Atom erased. Error: recognition of atom ATOM 896 1H2' DA A 29 ... failed. Atom erased. Error: recognition of atom ATOM 897 2H2' DA A 29 ... failed. Atom erased. Error: recognition of atom ATOM 924 'H5' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 928 1H2' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 929 2H2' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 951 C5M DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 955 HN3 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 956 1HM5 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 957 2HM5 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 958 3HM5 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 986 'H5' DG A 32 ... failed. Atom erased. Error: recognition of atom ATOM 990 1H2' DG A 32 ... failed. Atom erased. Error: recognition of atom ATOM 991 2H2' DG A 32 ... failed. Atom erased. Error: recognition of atom ATOM 1013 C5M DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1017 HN3 DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1018 1HM5 DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1019 2HM5 DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1020 3HM5 DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1042 C5M DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1046 HN3 DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1047 1HM5 DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1048 2HM5 DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1049 3HM5 DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1076 'H5' DA A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1080 1H2' DA A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1081 2H2' DA A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1108 'H5' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1112 1H2' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1113 2H2' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1140 'H5' DA A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1144 1H2' DA A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1145 2H2' DA A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1172 'H5' DA A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1176 1H2' DA A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1177 2H2' DA A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1205 'H5' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1209 1H2' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1210 2H2' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1235 'H5' DC A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1239 1H2' DC A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1240 2H2' DC A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1268 'H5' DG A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1272 1H2' DG A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1273 2H2' DG A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1301 'H5' DG A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1305 1H2' DG A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1306 2H2' DG A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1328 C5M DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1332 HN3 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1333 1HM5 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1334 2HM5 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1335 3HM5 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1362 'H5' DA A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1366 1H2' DA A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1367 2H2' DA A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1395 'H5' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1399 1H2' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1400 2H2' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1425 'H5' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1429 1H2' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1430 2H2' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1452 C5M DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1456 HN3 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1457 1HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1458 2HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1459 3HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1484 'H5' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1488 1H2' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1489 2H2' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1511 C5M DT A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1515 HN3 DT A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1516 1HM5 DT A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1517 2HM5 DT A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1518 3HM5 DT A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1546 'H5' DG A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1550 1H2' DG A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1551 2H2' DG A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1576 'H5' DC A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1580 1H2' DC A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1581 2H2' DC A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1603 C5M DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1607 HN3 DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1608 1HM5 DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1609 2HM5 DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1610 3HM5 DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1638 'H5' DG A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1642 1H2' DG A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1643 2H2' DG A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1665 C5M DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1669 HN3 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1670 1HM5 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1671 2HM5 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1672 3HM5 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1699 'H5' DA A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1703 1H2' DA A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1704 2H2' DA A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1732 'H5' DG A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1736 1H2' DG A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1737 2H2' DG A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1765 'H5' DG A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1769 1H2' DG A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1770 2H2' DG A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1798 'H5' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1802 1H2' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1803 2H2' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1825 C5M DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1829 HN3 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1830 1HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1831 2HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1832 3HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1860 'H5' DG A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1864 1H2' DG A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1865 2H2' DG A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1887 C5M DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1891 HN3 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1892 1HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1893 2HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1894 3HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1919 'H5' DC A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1923 1H2' DC A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1924 2H2' DC A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1952 'H5' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1956 1H2' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1957 2H2' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1984 'H5' DA A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1988 1H2' DA A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1989 2H2' DA A 64 ... failed. Atom erased. Error: recognition of atom ATOM 2014 'H5' DC A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2018 1H2' DC A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2019 2H2' DC A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2047 'H5' DG A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2051 1H2' DG A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2052 2H2' DG A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2079 'H5' DA A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2083 1H2' DA A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2084 2H2' DA A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2112 'H5' DG A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2116 1H2' DG A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2117 2H2' DG A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2145 'H5' DG A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2149 1H2' DG A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2150 2H2' DG A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2172 C5M DT A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2176 HN3 DT A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2177 1HM5 DT A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2178 2HM5 DT A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2179 3HM5 DT A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2204 'H5' DC A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2208 1H2' DC A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2209 2H2' DC A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2231 C5M DT A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2235 HN3 DT A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2236 1HM5 DT A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2237 2HM5 DT A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2238 3HM5 DT A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2265 'H5' DA A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2269 1H2' DA A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2270 2H2' DA A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2298 'H5' DG A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2302 1H2' DG A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2303 2H2' DG A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2330 'H5' DA A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2334 1H2' DA A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2335 2H2' DA A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2362 'H5' DA A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2366 1H2' DA A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2367 2H2' DA A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2389 C5M DT A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2393 HN3 DT A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2394 1HM5 DT A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2395 2HM5 DT A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2396 3HM5 DT A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2423 'H5' DA A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2427 1H2' DA A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2428 2H2' DA A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2453 'H5' DC A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2457 1H2' DC A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2458 2H2' DC A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2483 'H5' DC A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2487 1H2' DC A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2488 2H2' DC A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2515 'H5' DA A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2519 1H2' DA A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2520 2H2' DA A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2548 'H5' DG A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2549 'HO3 DG A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2553 1H2' DG A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2554 2H2' DG A 82 ... failed. Atom erased. Missing atom added: HETATM 1 P DA A 1 0.210 0.713 -2.581 1.00 0.00 P Missing atom added: HETATM 24 H5'2 DA A 1 1.810 -0.813 -0.647 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 1 2.186 -0.106 3.705 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 1 0.192 -0.168 3.833 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 2 0.305 -4.126 4.513 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 2 -3.512 -3.157 6.789 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 2 -3.234 -4.734 7.517 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 2 -6.929 -1.100 4.775 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 2 -3.704 -2.039 1.659 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 2 -3.630 -1.048 1.209 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 2 -4.412 -2.643 1.087 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 2 -2.725 -2.518 1.637 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 3 -3.679 -7.982 7.451 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 3 -7.532 -6.973 9.291 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 3 -8.310 -7.202 7.464 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 4 -9.087 -10.932 7.820 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 4 -13.140 -9.337 7.367 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 4 -12.888 -9.697 5.417 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 5 -14.512 -13.459 4.975 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 5 -17.227 -11.870 1.788 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 5 -15.563 -12.003 0.689 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 6 -16.887 -15.542 -0.397 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 6 -17.972 -14.213 -4.439 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 6 -16.028 -14.517 -4.792 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 7 -16.732 -18.144 -5.699 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 7 -13.059 -16.378 -8.032 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 7 -13.424 -17.615 -9.229 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 7 -9.871 -13.962 -5.757 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 7 -11.921 -16.959 -2.942 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 7 -12.167 -16.254 -2.146 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 7 -10.964 -17.437 -2.715 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 7 -12.698 -17.725 -2.992 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 8 -12.851 -20.518 -10.805 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 8 -9.240 -19.624 -13.038 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 8 -8.387 -20.240 -11.338 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 9 -8.126 -23.732 -12.689 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 9 -3.926 -22.541 -12.632 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 9 -3.903 -23.243 -10.760 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 10 -2.769 -26.742 -11.735 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 10 0.752 -25.667 -9.373 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 10 -0.235 -26.415 -7.804 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 11 0.830 -30.135 -8.233 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 11 0.019 -28.886 -3.805 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 11 0.946 -30.322 -3.389 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 11 -3.614 -26.870 -2.369 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 11 -4.319 -28.494 -6.625 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 11 -4.724 -27.570 -7.033 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 11 -5.135 -29.134 -6.291 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 11 -3.744 -29.010 -7.392 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 12 1.470 -33.701 -2.774 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 12 -1.041 -32.789 1.041 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 12 -0.438 -34.353 1.574 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 12 -4.883 -30.508 0.645 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 12 -3.567 -31.857 -3.528 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 12 -3.639 -30.900 -4.048 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 12 -4.499 -32.412 -3.668 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 12 -2.743 -32.433 -3.951 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 13 -1.093 -37.852 1.405 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 13 -4.062 -37.344 4.594 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 13 -5.379 -37.452 3.094 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 14 -5.630 -41.503 3.652 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 14 -9.510 -40.379 5.090 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 14 -10.021 -40.242 3.162 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 15 -11.686 -43.774 3.158 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 15 -14.850 -41.299 0.807 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 15 -13.817 -41.651 -0.868 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 16 -14.697 -43.119 -1.168 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 16 -14.458 -45.680 -4.525 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 16 -14.564 -47.277 -3.327 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 17 -16.364 -47.779 -6.409 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 17 -15.495 -47.172 -9.747 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 17 -13.959 -48.433 -9.534 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 18 -18.820 -51.053 -9.978 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 18 -18.226 -48.998 -14.350 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 18 -16.591 -50.075 -14.756 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 19 -15.834 -54.271 -14.861 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 19 -12.949 -53.186 -18.337 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 19 -12.291 -54.418 -16.907 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 20 -12.194 -57.806 -18.222 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 20 -7.959 -58.000 -17.645 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 20 -8.486 -58.684 -15.842 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 21 -8.138 -62.503 -17.963 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 21 -5.561 -62.727 -14.045 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 21 -7.160 -63.292 -12.987 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 22 -5.853 -67.438 -13.260 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 22 -4.820 -67.345 -8.979 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 22 -6.774 -67.110 -8.632 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 23 -7.246 -71.078 -8.101 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 23 -9.362 -69.790 -4.351 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 23 -11.000 -69.538 -5.470 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 24 -13.285 -72.648 -6.587 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 24 -15.256 -71.773 -3.160 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 24 -16.287 -71.273 -4.798 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 25 -18.290 -75.158 -4.113 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 25 -21.308 -71.387 -3.865 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 25 -21.486 -71.441 -5.856 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 26 -24.197 -73.723 -7.132 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 26 -24.633 -70.709 -10.417 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 26 -23.419 -71.929 -11.434 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 27 -26.821 -73.479 -12.858 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 27 -24.666 -71.676 -16.554 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 27 -23.691 -73.417 -16.667 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 28 -27.322 -73.900 -19.150 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 28 -25.331 -72.357 -22.822 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 28 -24.305 -74.067 -22.681 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 29 -26.445 -76.335 -25.144 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 29 -24.556 -75.676 -28.662 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 29 -22.825 -75.526 -27.673 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 30 -23.682 -79.982 -28.011 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 30 -23.320 -79.970 -32.434 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 30 -21.392 -79.541 -32.123 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 31 -20.512 -83.575 -31.773 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 31 -17.066 -81.261 -33.885 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 31 -16.520 -82.855 -34.391 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 31 -16.226 -76.823 -32.373 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 31 -17.592 -79.621 -28.980 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 31 -18.391 -78.979 -28.608 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 31 -16.683 -79.436 -28.402 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 31 -17.885 -80.665 -28.860 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 32 -14.881 -86.061 -33.688 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 32 -12.551 -86.384 -37.416 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 32 -11.548 -84.828 -36.662 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 33 -9.114 -88.021 -33.768 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 33 -7.517 -83.730 -35.683 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 33 -5.834 -84.232 -35.567 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 33 -7.881 -79.690 -35.212 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 33 -10.817 -81.986 -32.441 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 33 -11.631 -81.262 -32.554 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 33 -10.274 -81.759 -31.514 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 33 -11.252 -82.988 -32.350 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 34 -2.480 -86.179 -33.379 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 34 -2.759 -81.551 -35.125 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 34 -1.008 -81.401 -35.053 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 34 -5.760 -78.466 -34.407 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 34 -5.569 -81.592 -31.001 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 34 -6.643 -81.754 -30.895 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 34 -5.246 -80.843 -30.272 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 34 -5.046 -82.530 -30.801 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 35 2.457 -81.085 -33.082 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 35 2.053 -77.025 -35.207 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 35 0.976 -76.433 -33.630 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 36 4.970 -75.008 -32.256 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 36 2.389 -71.260 -33.177 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 36 1.490 -71.535 -31.413 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 37 4.349 -68.765 -30.518 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 37 0.245 -66.676 -30.124 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 37 0.144 -67.408 -28.266 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 38 1.973 -63.445 -27.825 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 38 -2.476 -63.370 -26.233 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 38 -1.874 -64.306 -24.573 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 39 -1.428 -60.842 -22.916 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 39 -4.968 -62.177 -20.714 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 39 -3.604 -62.903 -19.445 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 40 -2.570 -59.970 -16.537 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 40 -2.490 -62.412 -13.354 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 40 -0.833 -63.051 -14.271 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 41 0.199 -60.494 -11.502 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 41 0.865 -63.616 -8.559 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 41 2.596 -63.803 -9.540 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 42 4.470 -61.570 -7.307 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 42 6.626 -65.308 -6.511 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 42 7.785 -64.783 -8.052 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 43 10.312 -62.843 -6.128 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 43 11.276 -64.488 -10.902 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 43 12.911 -65.030 -10.547 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 43 10.064 -61.969 -13.891 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 43 7.236 -60.702 -10.531 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 43 6.292 -60.896 -11.037 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 43 7.506 -59.652 -10.653 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 43 7.134 -60.928 -9.471 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 44 13.299 -60.317 -8.435 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 44 14.288 -57.461 -11.121 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 44 14.575 -59.045 -12.306 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 45 11.498 -59.114 -14.349 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 45 14.330 -60.432 -17.752 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 45 13.931 -62.304 -17.173 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 46 11.750 -62.435 -20.330 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 46 13.989 -66.217 -21.341 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 46 12.760 -67.023 -19.986 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 47 11.126 -67.045 -23.920 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 47 13.297 -67.883 -21.338 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 47 13.971 -69.454 -20.926 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 47 17.669 -70.514 -24.515 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 47 16.793 -66.082 -23.696 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 47 16.800 -65.728 -24.728 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 47 17.786 -65.939 -23.261 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 47 16.067 -65.502 -23.124 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 48 12.960 -72.940 -18.191 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 48 13.309 -72.043 -13.835 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 48 11.445 -71.321 -13.857 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 49 9.806 -75.197 -14.598 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 49 6.803 -71.380 -13.196 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 49 5.722 -72.604 -12.541 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 49 5.776 -68.014 -15.655 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 49 8.160 -71.001 -18.207 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 49 8.725 -70.284 -18.791 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 49 7.262 -71.296 -18.741 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 49 8.769 -71.871 -17.990 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 50 2.880 -74.011 -13.316 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 50 0.774 -72.920 -10.558 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 50 -0.058 -72.281 -12.259 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 51 -3.222 -74.246 -12.755 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 51 -5.923 -70.720 -13.024 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 51 -5.319 -70.841 -14.926 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 52 -8.232 -72.822 -15.897 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 52 -7.465 -70.782 -20.054 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 52 -9.144 -71.216 -20.348 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 52 -3.352 -70.766 -21.776 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 52 -3.127 -73.626 -18.242 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 52 -2.345 -73.116 -17.675 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 52 -2.664 -74.386 -18.880 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 52 -3.808 -74.119 -17.544 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 53 -11.414 -72.155 -20.841 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 53 -15.420 -70.797 -21.977 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 53 -15.667 -70.675 -19.997 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 54 -14.442 -66.994 -20.671 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 54 -13.787 -67.483 -17.267 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 54 -14.891 -66.951 -16.005 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 54 -17.011 -71.487 -14.001 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 54 -12.865 -71.858 -16.019 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 54 -13.015 -72.869 -16.410 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 54 -12.349 -71.925 -15.055 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 54 -12.233 -71.302 -16.717 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 55 -18.995 -63.038 -19.364 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 55 -23.218 -62.397 -19.793 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 55 -23.240 -63.054 -17.905 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 56 -22.791 -60.323 -14.667 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 56 -24.396 -62.651 -11.637 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 56 -22.540 -63.394 -11.588 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 57 -22.385 -60.292 -8.927 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 57 -23.052 -63.028 -5.648 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 57 -21.056 -63.147 -5.618 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 58 -20.299 -60.471 -3.072 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 58 -18.416 -63.650 -0.868 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 58 -16.742 -63.252 -1.886 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 59 -15.003 -60.797 0.389 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 59 -12.102 -61.883 -3.315 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 59 -10.787 -61.425 -2.240 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 59 -12.413 -60.911 -7.323 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 59 -16.484 -59.742 -5.536 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 59 -17.118 -60.277 -6.250 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 59 -16.352 -58.712 -5.887 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 59 -16.991 -59.718 -4.567 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 60 -8.342 -59.245 -0.268 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 60 -4.985 -60.842 -2.582 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 60 -5.663 -59.760 -4.121 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 61 -2.961 -57.162 -3.070 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 61 -3.997 -57.618 -7.831 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 61 -2.567 -56.617 -8.054 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 61 -8.078 -57.423 -9.375 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 61 -8.205 -56.536 -4.881 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 61 -8.989 -57.240 -4.625 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 61 -8.628 -55.549 -5.046 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 61 -7.467 -56.496 -4.087 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 62 -1.015 -53.459 -8.622 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 62 -2.764 -53.476 -12.831 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 62 -4.359 -52.572 -12.036 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 63 -4.921 -49.286 -11.215 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 63 -8.056 -48.889 -13.792 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 63 -8.400 -48.012 -12.029 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 64 -5.440 -44.672 -15.096 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 64 -9.290 -44.851 -17.923 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 64 -10.327 -43.862 -16.531 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 65 -9.666 -40.613 -14.901 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 65 -12.634 -40.915 -13.569 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 65 -11.537 -40.676 -11.915 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 66 -13.392 -36.837 -12.035 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 66 -16.378 -38.093 -9.121 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 66 -14.863 -38.103 -7.815 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 67 -14.609 -32.213 -11.698 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 67 -16.698 -30.287 -14.930 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 67 -18.230 -31.294 -14.133 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 68 -19.904 -28.607 -12.026 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 68 -23.601 -29.923 -13.492 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 68 -23.656 -30.930 -11.765 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 69 -25.576 -28.446 -9.786 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 69 -28.339 -31.597 -9.861 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 69 -27.444 -32.174 -8.169 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 70 -30.945 -30.112 -7.370 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 70 -30.600 -33.670 -4.839 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 70 -32.208 -33.236 -4.273 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 70 -27.160 -35.101 -2.562 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 70 -25.770 -31.706 -5.312 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 70 -24.989 -32.226 -5.866 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 70 -25.327 -31.196 -4.453 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 70 -26.243 -30.968 -5.961 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 71 -34.263 -31.559 -2.083 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 71 -33.530 -34.783 0.814 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 71 -32.006 -33.656 1.449 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 72 -33.936 -31.773 4.410 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 72 -29.215 -32.159 4.918 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 72 -29.500 -31.382 6.470 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 72 -25.975 -30.530 3.006 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 72 -29.783 -29.356 0.660 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 72 -29.392 -29.618 -0.332 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 72 -29.621 -28.280 0.819 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 72 -30.865 -29.542 0.661 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 73 -30.656 -28.719 6.691 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 73 -30.950 -28.026 10.451 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 73 -31.158 -29.954 9.967 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 74 -26.596 -26.757 8.598 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 74 -22.935 -29.218 8.938 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 74 -23.555 -28.958 7.055 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 75 -21.741 -26.315 4.638 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 75 -20.752 -25.414 2.252 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 75 -19.362 -26.617 3.038 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 76 -19.346 -31.212 3.041 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 76 -18.234 -33.390 6.615 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 76 -20.025 -34.195 6.241 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 77 -18.035 -36.932 4.231 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 77 -22.988 -37.817 4.961 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 77 -22.624 -39.526 4.762 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 77 -26.150 -35.309 3.326 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 77 -22.162 -33.676 1.735 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 77 -22.356 -32.655 2.028 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 77 -22.475 -33.850 0.714 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 77 -21.117 -33.920 1.860 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 78 -22.758 -42.474 3.081 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 78 -27.342 -41.477 2.724 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 78 -26.964 -40.770 0.893 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 79 -25.901 -42.162 -2.078 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 79 -29.116 -40.475 -4.312 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 79 -27.412 -39.928 -5.202 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 80 -27.191 -41.655 -8.610 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 80 -30.036 -39.167 -10.314 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 80 -28.226 -39.185 -11.163 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 81 -30.111 -41.897 -14.486 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 81 -29.195 -37.840 -16.615 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 81 -27.245 -38.272 -16.541 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 82 -27.149 -39.311 -20.037 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 82 -23.948 -36.285 -20.655 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 82 -22.642 -37.640 -19.980 1.00 0.00 H Number of atoms: 2609 Number of residues: 82 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. A 1 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. A 1 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. A 1 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. A 1 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. A 1 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2819 Number of angles built: 5115 Number of dihedrals built: 7647 Number of impropers built: 562 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 3394202 Number of van der Waals pairs: 301505 Number of H-bonds built: 57 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 9 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 86203.7346 kcal/mol (86024.0142 without restraints) Performing minimization step: 2. Total energy = 84781.1533 kcal/mol (84606.0885 without restraints) Performing minimization step: 3. Total energy = 83397.3576 kcal/mol (83226.7940 without restraints) Performing minimization step: 4. Total energy = 82051.0659 kcal/mol (81884.8554 without restraints) Performing minimization step: 5. Total energy = 80741.0493 kcal/mol (80579.0498 without restraints) Performing minimization step: 6. Total energy = 79466.1287 kcal/mol (79308.2039 without restraints) Performing minimization step: 7. Total energy = 78225.1724 kcal/mol (78071.1915 without restraints) Performing minimization step: 8. Total energy = 77017.0938 kcal/mol (76866.9310 without restraints) Performing minimization step: 9. Total energy = 75840.8487 kcal/mol (75694.3833 without restraints) Performing minimization step: 10. Total energy = 74695.4339 kcal/mol (74552.5497 without restraints) Performing minimization step: 11. Total energy = 73579.8844 kcal/mol (73440.4698 without restraints) Performing minimization step: 12. Total energy = 72493.2722 kcal/mol (72357.2198 without restraints) Performing minimization step: 13. Total energy = 71434.7044 kcal/mol (71301.9107 without restraints) Performing minimization step: 14. Total energy = 70403.3211 kcal/mol (70273.6867 without restraints) Performing minimization step: 15. Total energy = 69398.2945 kcal/mol (69271.7233 without restraints) Performing minimization step: 16. Total energy = 68418.8274 kcal/mol (68295.2271 without restraints) Performing minimization step: 17. Total energy = 67464.1511 kcal/mol (67343.4327 without restraints) Performing minimization step: 18. Total energy = 66533.5247 kcal/mol (66415.6024 without restraints) Performing minimization step: 19. Total energy = 65626.2340 kcal/mol (65511.0249 without restraints) Performing minimization step: 20. Total energy = 64741.5898 kcal/mol (64629.0140 without restraints) Performing minimization step: 21. Total energy = 63878.9273 kcal/mol (63768.9077 without restraints) Performing minimization step: 22. Total energy = 63037.6045 kcal/mol (62930.0667 without restraints) Performing minimization step: 23. Total energy = 62217.0020 kcal/mol (62111.8741 without restraints) Performing minimization step: 24. Total energy = 61416.5213 kcal/mol (61313.7339 without restraints) Performing minimization step: 25. Total energy = 60635.5843 kcal/mol (60535.0704 without restraints) Performing minimization step: 26. Total energy = 59873.6325 kcal/mol (59775.3273 without restraints) Performing minimization step: 27. Total energy = 59130.1259 kcal/mol (59033.9666 without restraints) Performing minimization step: 28. Total energy = 58404.5426 kcal/mol (58310.4689 without restraints) Performing minimization step: 29. Total energy = 57696.3782 kcal/mol (57604.3313 without restraints) Performing minimization step: 30. Total energy = 57005.1440 kcal/mol (56915.0673 without restraints) Performing minimization step: 31. Total energy = 56330.3678 kcal/mol (56242.2064 without restraints) Performing minimization step: 32. Total energy = 55671.5924 kcal/mol (55585.2933 without restraints) Performing minimization step: 33. Total energy = 55028.3758 kcal/mol (54943.8875 without restraints) Performing minimization step: 34. Total energy = 54400.2888 kcal/mol (54317.5616 without restraints) Performing minimization step: 35. Total energy = 53786.9173 kcal/mol (53705.9031 without restraints) Performing minimization step: 36. Total energy = 53187.8597 kcal/mol (53108.5118 without restraints) Performing minimization step: 37. Total energy = 52602.7261 kcal/mol (52524.9993 without restraints) Performing minimization step: 38. Total energy = 52031.1399 kcal/mol (51954.9903 without restraints) Performing minimization step: 39. Total energy = 51472.7358 kcal/mol (51398.1210 without restraints) Performing minimization step: 40. Total energy = 50927.1590 kcal/mol (50854.0379 without restraints) Performing minimization step: 41. Total energy = 50394.0665 kcal/mol (50322.3991 without restraints) Performing minimization step: 42. Total energy = 49873.1256 kcal/mol (49802.8732 without restraints) Performing minimization step: 43. Total energy = 49364.0125 kcal/mol (49295.1376 without restraints) Performing minimization step: 44. Total energy = 48866.4149 kcal/mol (48798.8811 without restraints) Performing minimization step: 45. Total energy = 48380.0288 kcal/mol (48313.8007 without restraints) Performing minimization step: 46. Total energy = 47904.5590 kcal/mol (47839.6025 without restraints) Performing minimization step: 47. Total energy = 47439.7197 kcal/mol (47376.0014 without restraints) Performing minimization step: 48. Total energy = 46985.2333 kcal/mol (46922.7209 without restraints) Performing minimization step: 49. Total energy = 46540.8302 kcal/mol (46479.4924 without restraints) Performing minimization step: 50. Total energy = 46106.2488 kcal/mol (46046.0552 without restraints) Performing minimization step: 51. Total energy = 45681.2350 kcal/mol (45622.1561 without restraints) Performing minimization step: 52. Total energy = 45265.5423 kcal/mol (45207.5493 without restraints) Performing minimization step: 53. Total energy = 44858.9311 kcal/mol (44801.9963 without restraints) Performing minimization step: 54. Total energy = 44461.1686 kcal/mol (44405.2647 without restraints) Performing minimization step: 55. Total energy = 44072.0285 kcal/mol (44017.1294 without restraints) Performing minimization step: 56. Total energy = 43691.2917 kcal/mol (43637.3717 without restraints) Performing minimization step: 57. Total energy = 43318.7441 kcal/mol (43265.7785 without restraints) Performing minimization step: 58. Total energy = 42954.1791 kcal/mol (42902.1437 without restraints) Performing minimization step: 59. Total energy = 42597.3944 kcal/mol (42546.2656 without restraints) Performing minimization step: 60. Total energy = 42248.1941 kcal/mol (42197.9493 without restraints) Performing minimization step: 61. Total energy = 41906.3881 kcal/mol (41857.0050 without restraints) Performing minimization step: 62. Total energy = 41571.7910 kcal/mol (41523.2481 without restraints) Performing minimization step: 63. Total energy = 41244.2228 kcal/mol (41196.4992 without restraints) Performing minimization step: 64. Total energy = 40923.5083 kcal/mol (40876.5836 without restraints) Performing minimization step: 65. Total energy = 40609.4773 kcal/mol (40563.3317 without restraints) Performing minimization step: 66. Total energy = 40301.9642 kcal/mol (40256.5784 without restraints) Performing minimization step: 67. Total energy = 40000.8081 kcal/mol (39956.1632 without restraints) Performing minimization step: 68. Total energy = 39705.8516 kcal/mol (39661.9296 without restraints) Performing minimization step: 69. Total energy = 39416.9427 kcal/mol (39373.7256 without restraints) Performing minimization step: 70. Total energy = 39133.9328 kcal/mol (39091.4035 without restraints) Performing minimization step: 71. Total energy = 38856.6776 kcal/mol (38814.8192 without restraints) Performing minimization step: 72. Total energy = 38585.0365 kcal/mol (38543.8327 without restraints) Performing minimization step: 73. Total energy = 38318.8730 kcal/mol (38278.3079 without restraints) Performing minimization step: 74. Total energy = 38058.0533 kcal/mol (38018.1113 without restraints) Performing minimization step: 75. Total energy = 37802.4484 kcal/mol (37763.1144 without restraints) Performing minimization step: 76. Total energy = 37551.9319 kcal/mol (37513.1913 without restraints) Performing minimization step: 77. Total energy = 37306.3810 kcal/mol (37268.2195 without restraints) Performing minimization step: 78. Total energy = 37065.6758 kcal/mol (37028.0794 without restraints) Performing minimization step: 79. Total energy = 36829.7003 kcal/mol (36792.6555 without restraints) Performing minimization step: 80. Total energy = 36598.3406 kcal/mol (36561.8341 without restraints) Performing minimization step: 81. Total energy = 36371.4866 kcal/mol (36335.5055 without restraints) Performing minimization step: 82. Total energy = 36149.0304 kcal/mol (36113.5623 without restraints) Performing minimization step: 83. Total energy = 35930.8671 kcal/mol (35895.8996 without restraints) Performing minimization step: 84. Total energy = 35716.8948 kcal/mol (35682.4162 without restraints) Performing minimization step: 85. Total energy = 35507.0139 kcal/mol (35473.0125 without restraints) Performing minimization step: 86. Total energy = 35301.1273 kcal/mol (35267.5919 without restraints) Performing minimization step: 87. Total energy = 35099.1402 kcal/mol (35066.0597 without restraints) Performing minimization step: 88. Total energy = 34900.9614 kcal/mol (34868.3251 without restraints) Performing minimization step: 89. Total energy = 34706.5007 kcal/mol (34674.2981 without restraints) Performing minimization step: 90. Total energy = 34515.6706 kcal/mol (34483.8916 without restraints) Performing minimization step: 91. Total energy = 34328.3858 kcal/mol (34297.0203 without restraints) Performing minimization step: 92. Total energy = 34144.5634 kcal/mol (34113.6019 without restraints) Performing minimization step: 93. Total energy = 33964.1223 kcal/mol (33933.5553 without restraints) Performing minimization step: 94. Total energy = 33786.9837 kcal/mol (33756.8021 without restraints) Performing minimization step: 95. Total energy = 33613.0704 kcal/mol (33583.2650 without restraints) Performing minimization step: 96. Total energy = 33442.3072 kcal/mol (33412.8693 without restraints) Performing minimization step: 97. Total energy = 33274.6210 kcal/mol (33245.5423 without restraints) Performing minimization step: 98. Total energy = 33109.9406 kcal/mol (33081.2126 without restraints) Performing minimization step: 99. Total energy = 32948.1961 kcal/mol (32919.8107 without restraints) Performing minimization step: 100. Total energy = 32789.3200 kcal/mol (32761.2693 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 101. Total energy = 32633.2459 kcal/mol (32605.5221 without restraints) Performing minimization step: 102. Total energy = 32479.9090 kcal/mol (32452.5046 without restraints) Performing minimization step: 103. Total energy = 32329.2463 kcal/mol (32302.1542 without restraints) Performing minimization step: 104. Total energy = 32181.1969 kcal/mol (32154.4097 without restraints) Performing minimization step: 105. Total energy = 32035.7005 kcal/mol (32009.2113 without restraints) Performing minimization step: 106. Total energy = 31892.6986 kcal/mol (31866.5005 without restraints) Performing minimization step: 107. Total energy = 31752.1337 kcal/mol (31726.2202 without restraints) Performing minimization step: 108. Total energy = 31613.9510 kcal/mol (31588.3155 without restraints) Performing minimization step: 109. Total energy = 31478.0958 kcal/mol (31452.7320 without restraints) Performing minimization step: 110. Total energy = 31344.5151 kcal/mol (31319.4168 without restraints) Performing minimization step: 111. Total energy = 31213.1571 kcal/mol (31188.3183 without restraints) Performing minimization step: 112. Total energy = 31083.9716 kcal/mol (31059.3864 without restraints) Performing minimization step: 113. Total energy = 30956.9089 kcal/mol (30932.5715 without restraints) Performing minimization step: 114. Total energy = 30831.9213 kcal/mol (30807.8262 without restraints) Performing minimization step: 115. Total energy = 30708.9616 kcal/mol (30685.1034 without restraints) Performing minimization step: 116. Total energy = 30587.9840 kcal/mol (30564.3571 without restraints) Performing minimization step: 117. Total energy = 30468.9440 kcal/mol (30445.5434 without restraints) Performing minimization step: 118. Total energy = 30351.7980 kcal/mol (30328.6185 without restraints) Performing minimization step: 119. Total energy = 30236.5033 kcal/mol (30213.5400 without restraints) Performing minimization step: 120. Total energy = 30123.0187 kcal/mol (30100.2668 without restraints) Performing minimization step: 121. Total energy = 30011.3030 kcal/mol (29988.7577 without restraints) Performing minimization step: 122. Total energy = 29901.3168 kcal/mol (29878.9735 without restraints) Performing minimization step: 123. Total energy = 29793.0215 kcal/mol (29770.8756 without restraints) Performing minimization step: 124. Total energy = 29686.3793 kcal/mol (29664.4266 without restraints) Performing minimization step: 125. Total energy = 29581.3535 kcal/mol (29559.5895 without restraints) Performing minimization step: 126. Total energy = 29477.9076 kcal/mol (29456.3283 without restraints) Performing minimization step: 127. Total energy = 29376.0072 kcal/mol (29354.6084 without restraints) Performing minimization step: 128. Total energy = 29275.6177 kcal/mol (29254.3954 without restraints) Performing minimization step: 129. Total energy = 29176.7055 kcal/mol (29155.6557 without restraints) Performing minimization step: 130. Total energy = 29079.2379 kcal/mol (29058.3570 without restraints) Performing minimization step: 131. Total energy = 28983.1832 kcal/mol (28962.4674 without restraints) Performing minimization step: 132. Total energy = 28888.5099 kcal/mol (28867.9555 without restraints) Performing minimization step: 133. Total energy = 28795.1879 kcal/mol (28774.7914 without restraints) Performing minimization step: 134. Total energy = 28703.1870 kcal/mol (28682.9449 without restraints) Performing minimization step: 135. Total energy = 28612.4786 kcal/mol (28592.3875 without restraints) Performing minimization step: 136. Total energy = 28523.0339 kcal/mol (28503.0905 without restraints) Performing minimization step: 137. Total energy = 28434.8254 kcal/mol (28415.0266 without restraints) Performing minimization step: 138. Total energy = 28347.8266 kcal/mol (28328.1691 without restraints) Performing minimization step: 139. Total energy = 28262.0100 kcal/mol (28242.4908 without restraints) Performing minimization step: 140. Total energy = 28177.3505 kcal/mol (28157.9665 without restraints) Performing minimization step: 141. Total energy = 28093.8229 kcal/mol (28074.5713 without restraints) Performing minimization step: 142. Total energy = 28011.4024 kcal/mol (27992.2803 without restraints) Performing minimization step: 143. Total energy = 27930.0654 kcal/mol (27911.0699 without restraints) Performing minimization step: 144. Total energy = 27849.7881 kcal/mol (27830.9165 without restraints) Performing minimization step: 145. Total energy = 27770.5476 kcal/mol (27751.7973 without restraints) Performing minimization step: 146. Total energy = 27692.3219 kcal/mol (27673.6902 without restraints) Performing minimization step: 147. Total energy = 27615.0885 kcal/mol (27596.5730 without restraints) Performing minimization step: 148. Total energy = 27538.8265 kcal/mol (27520.4246 without restraints) Performing minimization step: 149. Total energy = 27463.5148 kcal/mol (27445.2240 without restraints) Performing minimization step: 150. Total energy = 27389.1329 kcal/mol (27370.9510 without restraints) Performing minimization step: 151. Total energy = 27315.6614 kcal/mol (27297.5860 without restraints) Performing minimization step: 152. Total energy = 27243.0811 kcal/mol (27225.1100 without restraints) Performing minimization step: 153. Total energy = 27171.3724 kcal/mol (27153.5034 without restraints) Performing minimization step: 154. Total energy = 27100.5168 kcal/mol (27082.7476 without restraints) Performing minimization step: 155. Total energy = 27030.4964 kcal/mol (27012.8250 without restraints) Performing minimization step: 156. Total energy = 26961.2937 kcal/mol (26943.7180 without restraints) Performing minimization step: 157. Total energy = 26892.8915 kcal/mol (26875.4095 without restraints) Performing minimization step: 158. Total energy = 26825.2726 kcal/mol (26807.8824 without restraints) Performing minimization step: 159. Total energy = 26758.4211 kcal/mol (26741.1208 without restraints) Performing minimization step: 160. Total energy = 26692.3205 kcal/mol (26675.1081 without restraints) Performing minimization step: 161. Total energy = 26626.9551 kcal/mol (26609.8289 without restraints) Performing minimization step: 162. Total energy = 26562.3097 kcal/mol (26545.2678 without restraints) Performing minimization step: 163. Total energy = 26498.3690 kcal/mol (26481.4096 without restraints) Performing minimization step: 164. Total energy = 26435.1186 kcal/mol (26418.2402 without restraints) Performing minimization step: 165. Total energy = 26372.5446 kcal/mol (26355.7455 without restraints) Performing minimization step: 166. Total energy = 26310.6328 kcal/mol (26293.9112 without restraints) Performing minimization step: 167. Total energy = 26249.3693 kcal/mol (26232.7238 without restraints) Performing minimization step: 168. Total energy = 26188.7410 kcal/mol (26172.1700 without restraints) Performing minimization step: 169. Total energy = 26128.7352 kcal/mol (26112.2372 without restraints) Performing minimization step: 170. Total energy = 26069.3392 kcal/mol (26052.9127 without restraints) Performing minimization step: 171. Total energy = 26010.5404 kcal/mol (25994.1839 without restraints) Performing minimization step: 172. Total energy = 25952.3267 kcal/mol (25936.0390 without restraints) Performing minimization step: 173. Total energy = 25894.6864 kcal/mol (25878.4658 without restraints) Performing minimization step: 174. Total energy = 25837.6077 kcal/mol (25821.4531 without restraints) Performing minimization step: 175. Total energy = 25781.0798 kcal/mol (25764.9899 without restraints) Performing minimization step: 176. Total energy = 25725.0913 kcal/mol (25709.0646 without restraints) Performing minimization step: 177. Total energy = 25669.6315 kcal/mol (25653.6670 without restraints) Performing minimization step: 178. Total energy = 25614.6898 kcal/mol (25598.7861 without restraints) Performing minimization step: 179. Total energy = 25560.2568 kcal/mol (25544.4128 without restraints) Performing minimization step: 180. Total energy = 25506.3213 kcal/mol (25490.5358 without restraints) Performing minimization step: 181. Total energy = 25452.8745 kcal/mol (25437.1464 without restraints) Performing minimization step: 182. Total energy = 25399.9060 kcal/mol (25384.2342 without restraints) Performing minimization step: 183. Total energy = 25347.4076 kcal/mol (25331.7910 without restraints) Performing minimization step: 184. Total energy = 25295.3691 kcal/mol (25279.8066 without restraints) Performing minimization step: 185. Total energy = 25243.7821 kcal/mol (25228.2727 without restraints) Performing minimization step: 186. Total energy = 25192.6379 kcal/mol (25177.1807 without restraints) Performing minimization step: 187. Total energy = 25141.9279 kcal/mol (25126.5217 without restraints) Performing minimization step: 188. Total energy = 25091.6440 kcal/mol (25076.2880 without restraints) Performing minimization step: 189. Total energy = 25041.7782 kcal/mol (25026.4714 without restraints) Performing minimization step: 190. Total energy = 24992.3227 kcal/mol (24977.0642 without restraints) Performing minimization step: 191. Total energy = 24943.2694 kcal/mol (24928.0584 without restraints) Performing minimization step: 192. Total energy = 24894.6105 kcal/mol (24879.4459 without restraints) Performing minimization step: 193. Total energy = 24846.3395 kcal/mol (24831.2206 without restraints) Performing minimization step: 194. Total energy = 24798.4493 kcal/mol (24783.3752 without restraints) Performing minimization step: 195. Total energy = 24750.9314 kcal/mol (24735.9014 without restraints) Performing minimization step: 196. Total energy = 24703.7803 kcal/mol (24688.7934 without restraints) Performing minimization step: 197. Total energy = 24656.9890 kcal/mol (24642.0446 without restraints) Performing minimization step: 198. Total energy = 24610.5508 kcal/mol (24595.6481 without restraints) Performing minimization step: 199. Total energy = 24564.4597 kcal/mol (24549.5978 without restraints) Performing minimization step: 200. Total energy = 24518.7092 kcal/mol (24503.8876 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 201. Total energy = 24473.2934 kcal/mol (24458.5113 without restraints) Performing minimization step: 202. Total energy = 24428.2061 kcal/mol (24413.4629 without restraints) Performing minimization step: 203. Total energy = 24383.4419 kcal/mol (24368.7368 without restraints) Performing minimization step: 204. Total energy = 24338.9944 kcal/mol (24324.3268 without restraints) Performing minimization step: 205. Total energy = 24294.8590 kcal/mol (24280.2283 without restraints) Performing minimization step: 206. Total energy = 24251.0294 kcal/mol (24236.4348 without restraints) Performing minimization step: 207. Total energy = 24207.5006 kcal/mol (24192.9417 without restraints) Performing minimization step: 208. Total energy = 24164.2675 kcal/mol (24149.7436 without restraints) Performing minimization step: 209. Total energy = 24121.3254 kcal/mol (24106.8360 without restraints) Performing minimization step: 210. Total energy = 24078.6689 kcal/mol (24064.2132 without restraints) Performing minimization step: 211. Total energy = 24036.2930 kcal/mol (24021.8706 without restraints) Performing minimization step: 212. Total energy = 23994.1934 kcal/mol (23979.8037 without restraints) Performing minimization step: 213. Total energy = 23952.3654 kcal/mol (23938.0080 without restraints) Performing minimization step: 214. Total energy = 23910.8039 kcal/mol (23896.4781 without restraints) Performing minimization step: 215. Total energy = 23869.5058 kcal/mol (23855.2113 without restraints) Performing minimization step: 216. Total energy = 23828.4659 kcal/mol (23814.2019 without restraints) Performing minimization step: 217. Total energy = 23787.6801 kcal/mol (23773.4463 without restraints) Performing minimization step: 218. Total energy = 23747.1445 kcal/mol (23732.9404 without restraints) Performing minimization step: 219. Total energy = 23706.8552 kcal/mol (23692.6804 without restraints) Performing minimization step: 220. Total energy = 23666.8081 kcal/mol (23652.6620 without restraints) Performing minimization step: 221. Total energy = 23626.9989 kcal/mol (23612.8812 without restraints) Performing minimization step: 222. Total energy = 23587.4249 kcal/mol (23573.3352 without restraints) Performing minimization step: 223. Total energy = 23548.0815 kcal/mol (23534.0192 without restraints) Performing minimization step: 224. Total energy = 23508.9656 kcal/mol (23494.9305 without restraints) Performing minimization step: 225. Total energy = 23470.0734 kcal/mol (23456.0648 without restraints) Performing minimization step: 226. Total energy = 23431.4012 kcal/mol (23417.4187 without restraints) Performing minimization step: 227. Total energy = 23392.9461 kcal/mol (23378.9896 without restraints) Performing minimization step: 228. Total energy = 23354.7048 kcal/mol (23340.7739 without restraints) Performing minimization step: 229. Total energy = 23316.6749 kcal/mol (23302.7691 without restraints) Performing minimization step: 230. Total energy = 23278.8521 kcal/mol (23264.9710 without restraints) Performing minimization step: 231. Total energy = 23241.2336 kcal/mol (23227.3770 without restraints) Performing minimization step: 232. Total energy = 23203.8165 kcal/mol (23189.9838 without restraints) Performing minimization step: 233. Total energy = 23166.5981 kcal/mol (23152.7892 without restraints) Performing minimization step: 234. Total energy = 23129.5760 kcal/mol (23115.7905 without restraints) Performing minimization step: 235. Total energy = 23092.7458 kcal/mol (23078.9833 without restraints) Performing minimization step: 236. Total energy = 23056.1059 kcal/mol (23042.3662 without restraints) Performing minimization step: 237. Total energy = 23019.6534 kcal/mol (23005.9362 without restraints) Performing minimization step: 238. Total energy = 22983.3857 kcal/mol (22969.6907 without restraints) Performing minimization step: 239. Total energy = 22947.3005 kcal/mol (22933.6274 without restraints) Performing minimization step: 240. Total energy = 22911.3950 kcal/mol (22897.7433 without restraints) Performing minimization step: 241. Total energy = 22875.6668 kcal/mol (22862.0364 without restraints) Performing minimization step: 242. Total energy = 22840.1130 kcal/mol (22826.5035 without restraints) Performing minimization step: 243. Total energy = 22804.7319 kcal/mol (22791.1432 without restraints) Performing minimization step: 244. Total energy = 22769.5208 kcal/mol (22755.9525 without restraints) Performing minimization step: 245. Total energy = 22734.4779 kcal/mol (22720.9299 without restraints) Performing minimization step: 246. Total energy = 22699.6008 kcal/mol (22686.0727 without restraints) Performing minimization step: 247. Total energy = 22664.8876 kcal/mol (22651.3791 without restraints) Performing minimization step: 248. Total energy = 22630.3359 kcal/mol (22616.8469 without restraints) Performing minimization step: 249. Total energy = 22595.9437 kcal/mol (22582.4739 without restraints) Performing minimization step: 250. Total energy = 22561.7096 kcal/mol (22548.2588 without restraints) Performing minimization step: 251. Total energy = 22527.6298 kcal/mol (22514.1976 without restraints) Performing minimization step: 252. Total energy = 22493.7034 kcal/mol (22480.2898 without restraints) Performing minimization step: 253. Total energy = 22459.9286 kcal/mol (22446.5333 without restraints) Performing minimization step: 254. Total energy = 22426.3037 kcal/mol (22412.9265 without restraints) Performing minimization step: 255. Total energy = 22392.8268 kcal/mol (22379.4674 without restraints) Performing minimization step: 256. Total energy = 22359.4954 kcal/mol (22346.1537 without restraints) Performing minimization step: 257. Total energy = 22326.3085 kcal/mol (22312.9842 without restraints) Performing minimization step: 258. Total energy = 22293.2643 kcal/mol (22279.9574 without restraints) Performing minimization step: 259. Total energy = 22260.3607 kcal/mol (22247.0707 without restraints) Performing minimization step: 260. Total energy = 22227.5965 kcal/mol (22214.3233 without restraints) Performing minimization step: 261. Total energy = 22194.9702 kcal/mol (22181.7138 without restraints) Performing minimization step: 262. Total energy = 22162.4800 kcal/mol (22149.2400 without restraints) Performing minimization step: 263. Total energy = 22130.1245 kcal/mol (22116.9009 without restraints) Performing minimization step: 264. Total energy = 22097.9016 kcal/mol (22084.6940 without restraints) Performing minimization step: 265. Total energy = 22065.8104 kcal/mol (22052.6190 without restraints) Performing minimization step: 266. Total energy = 22033.8491 kcal/mol (22020.6735 without restraints) Performing minimization step: 267. Total energy = 22002.0158 kcal/mol (21988.8558 without restraints) Performing minimization step: 268. Total energy = 21970.3106 kcal/mol (21957.1661 without restraints) Performing minimization step: 269. Total energy = 21938.7309 kcal/mol (21925.6017 without restraints) Performing minimization step: 270. Total energy = 21907.2759 kcal/mol (21894.1619 without restraints) Performing minimization step: 271. Total energy = 21875.9437 kcal/mol (21862.8447 without restraints) Performing minimization step: 272. Total energy = 21844.7333 kcal/mol (21831.6493 without restraints) Performing minimization step: 273. Total energy = 21813.6438 kcal/mol (21800.5743 without restraints) Performing minimization step: 274. Total energy = 21782.6734 kcal/mol (21769.6187 without restraints) Performing minimization step: 275. Total energy = 21751.8215 kcal/mol (21738.7811 without restraints) Performing minimization step: 276. Total energy = 21721.0861 kcal/mol (21708.0599 without restraints) Performing minimization step: 277. Total energy = 21690.4666 kcal/mol (21677.4547 without restraints) Performing minimization step: 278. Total energy = 21659.9610 kcal/mol (21646.9630 without restraints) Performing minimization step: 279. Total energy = 21629.5696 kcal/mol (21616.5855 without restraints) Performing minimization step: 280. Total energy = 21599.2902 kcal/mol (21586.3199 without restraints) Performing minimization step: 281. Total energy = 21569.1221 kcal/mol (21556.1655 without restraints) Performing minimization step: 282. Total energy = 21539.0640 kcal/mol (21526.1208 without restraints) Performing minimization step: 283. Total energy = 21509.1155 kcal/mol (21496.1858 without restraints) Performing minimization step: 284. Total energy = 21479.2747 kcal/mol (21466.3582 without restraints) Performing minimization step: 285. Total energy = 21449.5410 kcal/mol (21436.6377 without restraints) Performing minimization step: 286. Total energy = 21419.9130 kcal/mol (21407.0227 without restraints) Performing minimization step: 287. Total energy = 21390.3903 kcal/mol (21377.5130 without restraints) Performing minimization step: 288. Total energy = 21360.9713 kcal/mol (21348.1068 without restraints) Performing minimization step: 289. Total energy = 21331.6555 kcal/mol (21318.8037 without restraints) Performing minimization step: 290. Total energy = 21302.4417 kcal/mol (21289.6025 without restraints) Performing minimization step: 291. Total energy = 21273.3296 kcal/mol (21260.5029 without restraints) Performing minimization step: 292. Total energy = 21244.3178 kcal/mol (21231.5035 without restraints) Performing minimization step: 293. Total energy = 21215.4054 kcal/mol (21202.6034 without restraints) Performing minimization step: 294. Total energy = 21186.5917 kcal/mol (21173.8019 without restraints) Performing minimization step: 295. Total energy = 21157.8751 kcal/mol (21145.0974 without restraints) Performing minimization step: 296. Total energy = 21129.2560 kcal/mol (21116.4903 without restraints) Performing minimization step: 297. Total energy = 21100.7330 kcal/mol (21087.9793 without restraints) Performing minimization step: 298. Total energy = 21072.3057 kcal/mol (21059.5636 without restraints) Performing minimization step: 299. Total energy = 21043.9724 kcal/mol (21031.2421 without restraints) Performing minimization step: 300. Total energy = 21015.7333 kcal/mol (21003.0147 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 301. Total energy = 20987.5866 kcal/mol (20974.8797 without restraints) Performing minimization step: 302. Total energy = 20959.5324 kcal/mol (20946.8368 without restraints) Performing minimization step: 303. Total energy = 20931.5697 kcal/mol (20918.8856 without restraints) Performing minimization step: 304. Total energy = 20903.6980 kcal/mol (20891.0250 without restraints) Performing minimization step: 305. Total energy = 20875.9160 kcal/mol (20863.2543 without restraints) Performing minimization step: 306. Total energy = 20848.2232 kcal/mol (20835.5727 without restraints) Performing minimization step: 307. Total energy = 20820.6191 kcal/mol (20807.9796 without restraints) Performing minimization step: 308. Total energy = 20793.1028 kcal/mol (20780.4741 without restraints) Performing minimization step: 309. Total energy = 20765.6737 kcal/mol (20753.0560 without restraints) Performing minimization step: 310. Total energy = 20738.3312 kcal/mol (20725.7245 without restraints) Performing minimization step: 311. Total energy = 20711.0748 kcal/mol (20698.4788 without restraints) Performing minimization step: 312. Total energy = 20683.9041 kcal/mol (20671.3187 without restraints) Performing minimization step: 313. Total energy = 20656.8175 kcal/mol (20644.2428 without restraints) Performing minimization step: 314. Total energy = 20629.8146 kcal/mol (20617.2503 without restraints) Performing minimization step: 315. Total energy = 20602.8955 kcal/mol (20590.3418 without restraints) Performing minimization step: 316. Total energy = 20576.0593 kcal/mol (20563.5159 without restraints) Performing minimization step: 317. Total energy = 20549.3056 kcal/mol (20536.7726 without restraints) Performing minimization step: 318. Total energy = 20522.6336 kcal/mol (20510.1108 without restraints) Performing minimization step: 319. Total energy = 20496.0426 kcal/mol (20483.5301 without restraints) Performing minimization step: 320. Total energy = 20469.5324 kcal/mol (20457.0300 without restraints) Performing minimization step: 321. Total energy = 20443.1021 kcal/mol (20430.6097 without restraints) Performing minimization step: 322. Total energy = 20416.7510 kcal/mol (20404.2685 without restraints) Performing minimization step: 323. Total energy = 20390.4789 kcal/mol (20378.0065 without restraints) Performing minimization step: 324. Total energy = 20364.2852 kcal/mol (20351.8227 without restraints) Performing minimization step: 325. Total energy = 20338.1689 kcal/mol (20325.7161 without restraints) Performing minimization step: 326. Total energy = 20312.1303 kcal/mol (20299.6874 without restraints) Performing minimization step: 327. Total energy = 20286.1685 kcal/mol (20273.7353 without restraints) Performing minimization step: 328. Total energy = 20260.2837 kcal/mol (20247.8602 without restraints) Performing minimization step: 329. Total energy = 20234.4749 kcal/mol (20222.0611 without restraints) Performing minimization step: 330. Total energy = 20208.7405 kcal/mol (20196.3362 without restraints) Performing minimization step: 331. Total energy = 20183.0813 kcal/mol (20170.6863 without restraints) Performing minimization step: 332. Total energy = 20157.4967 kcal/mol (20145.1113 without restraints) Performing minimization step: 333. Total energy = 20131.9860 kcal/mol (20119.6101 without restraints) Performing minimization step: 334. Total energy = 20106.5483 kcal/mol (20094.1816 without restraints) Performing minimization step: 335. Total energy = 20081.1836 kcal/mol (20068.8262 without restraints) Performing minimization step: 336. Total energy = 20055.8919 kcal/mol (20043.5437 without restraints) Performing minimization step: 337. Total energy = 20030.6723 kcal/mol (20018.3333 without restraints) Performing minimization step: 338. Total energy = 20005.5240 kcal/mol (19993.1941 without restraints) Performing minimization step: 339. Total energy = 19980.4471 kcal/mol (19968.1263 without restraints) Performing minimization step: 340. Total energy = 19955.4411 kcal/mol (19943.1293 without restraints) Performing minimization step: 341. Total energy = 19930.5055 kcal/mol (19918.2025 without restraints) Performing minimization step: 342. Total energy = 19905.6397 kcal/mol (19893.3457 without restraints) Performing minimization step: 343. Total energy = 19880.8439 kcal/mol (19868.5590 without restraints) Performing minimization step: 344. Total energy = 19856.1177 kcal/mol (19843.8417 without restraints) Performing minimization step: 345. Total energy = 19831.4603 kcal/mol (19819.1931 without restraints) Performing minimization step: 346. Total energy = 19806.8714 kcal/mol (19794.6130 without restraints) Performing minimization step: 347. Total energy = 19782.3500 kcal/mol (19770.1004 without restraints) Performing minimization step: 348. Total energy = 19757.8969 kcal/mol (19745.6559 without restraints) Performing minimization step: 349. Total energy = 19733.5111 kcal/mol (19721.2788 without restraints) Performing minimization step: 350. Total energy = 19709.1924 kcal/mol (19696.9687 without restraints) Performing minimization step: 351. Total energy = 19684.9400 kcal/mol (19672.7248 without restraints) Performing minimization step: 352. Total energy = 19660.7545 kcal/mol (19648.5479 without restraints) Performing minimization step: 353. Total energy = 19636.6341 kcal/mol (19624.4360 without restraints) Performing minimization step: 354. Total energy = 19612.5800 kcal/mol (19600.3903 without restraints) Performing minimization step: 355. Total energy = 19588.5906 kcal/mol (19576.4093 without restraints) Performing minimization step: 356. Total energy = 19564.6661 kcal/mol (19552.4932 without restraints) Performing minimization step: 357. Total energy = 19540.8062 kcal/mol (19528.6417 without restraints) Performing minimization step: 358. Total energy = 19517.0109 kcal/mol (19504.8546 without restraints) Performing minimization step: 359. Total energy = 19493.2789 kcal/mol (19481.1309 without restraints) Performing minimization step: 360. Total energy = 19469.6105 kcal/mol (19457.4706 without restraints) Performing minimization step: 361. Total energy = 19446.0054 kcal/mol (19433.8738 without restraints) Performing minimization step: 362. Total energy = 19422.4632 kcal/mol (19410.3398 without restraints) Performing minimization step: 363. Total energy = 19398.9840 kcal/mol (19386.8687 without restraints) Performing minimization step: 364. Total energy = 19375.5670 kcal/mol (19363.4598 without restraints) Performing minimization step: 365. Total energy = 19352.2121 kcal/mol (19340.1129 without restraints) Performing minimization step: 366. Total energy = 19328.9186 kcal/mol (19316.8274 without restraints) Performing minimization step: 367. Total energy = 19305.6865 kcal/mol (19293.6033 without restraints) Performing minimization step: 368. Total energy = 19282.5159 kcal/mol (19270.4407 without restraints) Performing minimization step: 369. Total energy = 19259.4058 kcal/mol (19247.3386 without restraints) Performing minimization step: 370. Total energy = 19236.3562 kcal/mol (19224.2968 without restraints) Performing minimization step: 371. Total energy = 19213.3668 kcal/mol (19201.3153 without restraints) Performing minimization step: 372. Total energy = 19190.4370 kcal/mol (19178.3932 without restraints) Performing minimization step: 373. Total energy = 19167.5674 kcal/mol (19155.5316 without restraints) Performing minimization step: 374. Total energy = 19144.7572 kcal/mol (19132.7290 without restraints) Performing minimization step: 375. Total energy = 19122.0054 kcal/mol (19109.9850 without restraints) Performing minimization step: 376. Total energy = 19099.3130 kcal/mol (19087.3003 without restraints) Performing minimization step: 377. Total energy = 19076.6790 kcal/mol (19064.6740 without restraints) Performing minimization step: 378. Total energy = 19054.1039 kcal/mol (19042.1065 without restraints) Performing minimization step: 379. Total energy = 19031.5864 kcal/mol (19019.5967 without restraints) Performing minimization step: 380. Total energy = 19009.1266 kcal/mol (18997.1444 without restraints) Performing minimization step: 381. Total energy = 18986.7246 kcal/mol (18974.7500 without restraints) Performing minimization step: 382. Total energy = 18964.3797 kcal/mol (18952.4126 without restraints) Performing minimization step: 383. Total energy = 18942.0918 kcal/mol (18930.1323 without restraints) Performing minimization step: 384. Total energy = 18919.8610 kcal/mol (18907.9089 without restraints) Performing minimization step: 385. Total energy = 18897.6873 kcal/mol (18885.7428 without restraints) Performing minimization step: 386. Total energy = 18875.5695 kcal/mol (18863.6324 without restraints) Performing minimization step: 387. Total energy = 18853.5080 kcal/mol (18841.5783 without restraints) Performing minimization step: 388. Total energy = 18831.5019 kcal/mol (18819.5793 without restraints) Performing minimization step: 389. Total energy = 18809.5510 kcal/mol (18797.6360 without restraints) Performing minimization step: 390. Total energy = 18787.6561 kcal/mol (18775.7484 without restraints) Performing minimization step: 391. Total energy = 18765.8163 kcal/mol (18753.9159 without restraints) Performing minimization step: 392. Total energy = 18744.0313 kcal/mol (18732.1381 without restraints) Performing minimization step: 393. Total energy = 18722.3011 kcal/mol (18710.4152 without restraints) Performing minimization step: 394. Total energy = 18700.6258 kcal/mol (18688.7471 without restraints) Performing minimization step: 395. Total energy = 18679.0045 kcal/mol (18667.1330 without restraints) Performing minimization step: 396. Total energy = 18657.4373 kcal/mol (18645.5731 without restraints) Performing minimization step: 397. Total energy = 18635.9239 kcal/mol (18624.0668 without restraints) Performing minimization step: 398. Total energy = 18614.4646 kcal/mol (18602.6147 without restraints) Performing minimization step: 399. Total energy = 18593.0587 kcal/mol (18581.2159 without restraints) Performing minimization step: 400. Total energy = 18571.7057 kcal/mol (18559.8700 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 401. Total energy = 18550.4054 kcal/mol (18538.5768 without restraints) Performing minimization step: 402. Total energy = 18529.1581 kcal/mol (18517.3365 without restraints) Performing minimization step: 403. Total energy = 18507.9629 kcal/mol (18496.1483 without restraints) Performing minimization step: 404. Total energy = 18486.8205 kcal/mol (18475.0130 without restraints) Performing minimization step: 405. Total energy = 18465.7302 kcal/mol (18453.9296 without restraints) Performing minimization step: 406. Total energy = 18444.6917 kcal/mol (18432.8981 without restraints) Performing minimization step: 407. Total energy = 18423.7061 kcal/mol (18411.9194 without restraints) Performing minimization step: 408. Total energy = 18402.7711 kcal/mol (18390.9914 without restraints) Performing minimization step: 409. Total energy = 18381.8876 kcal/mol (18370.1146 without restraints) Performing minimization step: 410. Total energy = 18361.0557 kcal/mol (18349.2898 without restraints) Performing minimization step: 411. Total energy = 18340.2749 kcal/mol (18328.5157 without restraints) Performing minimization step: 412. Total energy = 18319.5445 kcal/mol (18307.7922 without restraints) Performing minimization step: 413. Total energy = 18298.8649 kcal/mol (18287.1194 without restraints) Performing minimization step: 414. Total energy = 18278.2352 kcal/mol (18266.4965 without restraints) Performing minimization step: 415. Total energy = 18257.6567 kcal/mol (18245.9248 without restraints) Performing minimization step: 416. Total energy = 18237.1278 kcal/mol (18225.4027 without restraints) Performing minimization step: 417. Total energy = 18216.6488 kcal/mol (18204.9305 without restraints) Performing minimization step: 418. Total energy = 18196.2197 kcal/mol (18184.5080 without restraints) Performing minimization step: 419. Total energy = 18175.8400 kcal/mol (18164.1351 without restraints) Performing minimization step: 420. Total energy = 18155.5097 kcal/mol (18143.8114 without restraints) Performing minimization step: 421. Total energy = 18135.2286 kcal/mol (18123.5369 without restraints) Performing minimization step: 422. Total energy = 18114.9971 kcal/mol (18103.3122 without restraints) Performing minimization step: 423. Total energy = 18094.8136 kcal/mol (18083.1353 without restraints) Performing minimization step: 424. Total energy = 18074.6794 kcal/mol (18063.0077 without restraints) Performing minimization step: 425. Total energy = 18054.5939 kcal/mol (18042.9289 without restraints) Performing minimization step: 426. Total energy = 18034.5565 kcal/mol (18022.8979 without restraints) Performing minimization step: 427. Total energy = 18014.5674 kcal/mol (18002.9154 without restraints) Performing minimization step: 428. Total energy = 17994.6261 kcal/mol (17982.9806 without restraints) Performing minimization step: 429. Total energy = 17974.7328 kcal/mol (17963.0938 without restraints) Performing minimization step: 430. Total energy = 17954.8864 kcal/mol (17943.2540 without restraints) Performing minimization step: 431. Total energy = 17935.0880 kcal/mol (17923.4623 without restraints) Performing minimization step: 432. Total energy = 17915.3374 kcal/mol (17903.7179 without restraints) Performing minimization step: 433. Total energy = 17895.6338 kcal/mol (17884.0209 without restraints) Performing minimization step: 434. Total energy = 17875.9775 kcal/mol (17864.3710 without restraints) Performing minimization step: 435. Total energy = 17856.3682 kcal/mol (17844.7682 without restraints) Performing minimization step: 436. Total energy = 17836.8050 kcal/mol (17825.2112 without restraints) Performing minimization step: 437. Total energy = 17817.2886 kcal/mol (17805.7013 without restraints) Performing minimization step: 438. Total energy = 17797.8185 kcal/mol (17786.2375 without restraints) Performing minimization step: 439. Total energy = 17778.3945 kcal/mol (17766.8197 without restraints) Performing minimization step: 440. Total energy = 17759.0167 kcal/mol (17747.4484 without restraints) Performing minimization step: 441. Total energy = 17739.6854 kcal/mol (17728.1234 without restraints) Performing minimization step: 442. Total energy = 17720.3997 kcal/mol (17708.8440 without restraints) Performing minimization step: 443. Total energy = 17701.1598 kcal/mol (17689.6104 without restraints) Performing minimization step: 444. Total energy = 17681.9656 kcal/mol (17670.4226 without restraints) Performing minimization step: 445. Total energy = 17662.8167 kcal/mol (17651.2799 without restraints) Performing minimization step: 446. Total energy = 17643.7132 kcal/mol (17632.1826 without restraints) Performing minimization step: 447. Total energy = 17624.6546 kcal/mol (17613.1302 without restraints) Performing minimization step: 448. Total energy = 17605.6407 kcal/mol (17594.1226 without restraints) Performing minimization step: 449. Total energy = 17586.6720 kcal/mol (17575.1601 without restraints) Performing minimization step: 450. Total energy = 17567.7483 kcal/mol (17556.2424 without restraints) Performing minimization step: 451. Total energy = 17548.8684 kcal/mol (17537.3689 without restraints) Performing minimization step: 452. Total energy = 17530.0334 kcal/mol (17518.5401 without restraints) Performing minimization step: 453. Total energy = 17511.2429 kcal/mol (17499.7557 without restraints) Performing minimization step: 454. Total energy = 17492.4957 kcal/mol (17481.0145 without restraints) Performing minimization step: 455. Total energy = 17473.7928 kcal/mol (17462.3179 without restraints) Performing minimization step: 456. Total energy = 17455.1331 kcal/mol (17443.6643 without restraints) Performing minimization step: 457. Total energy = 17436.5177 kcal/mol (17425.0549 without restraints) Performing minimization step: 458. Total energy = 17417.9459 kcal/mol (17406.4892 without restraints) Performing minimization step: 459. Total energy = 17399.4178 kcal/mol (17387.9671 without restraints) Performing minimization step: 460. Total energy = 17380.9326 kcal/mol (17369.4880 without restraints) Performing minimization step: 461. Total energy = 17362.4906 kcal/mol (17351.0520 without restraints) Performing minimization step: 462. Total energy = 17344.0916 kcal/mol (17332.6591 without restraints) Performing minimization step: 463. Total energy = 17325.7362 kcal/mol (17314.3098 without restraints) Performing minimization step: 464. Total energy = 17307.4232 kcal/mol (17296.0026 without restraints) Performing minimization step: 465. Total energy = 17289.1524 kcal/mol (17277.7375 without restraints) Performing minimization step: 466. Total energy = 17270.9241 kcal/mol (17259.5155 without restraints) Performing minimization step: 467. Total energy = 17252.7384 kcal/mol (17241.3358 without restraints) Performing minimization step: 468. Total energy = 17234.5953 kcal/mol (17223.1984 without restraints) Performing minimization step: 469. Total energy = 17216.4941 kcal/mol (17205.1033 without restraints) Performing minimization step: 470. Total energy = 17198.4348 kcal/mol (17187.0500 without restraints) Performing minimization step: 471. Total energy = 17180.4168 kcal/mol (17169.0379 without restraints) Performing minimization step: 472. Total energy = 17162.4413 kcal/mol (17151.0683 without restraints) Performing minimization step: 473. Total energy = 17144.5074 kcal/mol (17133.1402 without restraints) Performing minimization step: 474. Total energy = 17126.6152 kcal/mol (17115.2539 without restraints) Performing minimization step: 475. Total energy = 17108.7641 kcal/mol (17097.4086 without restraints) Performing minimization step: 476. Total energy = 17090.9544 kcal/mol (17079.6047 without restraints) Performing minimization step: 477. Total energy = 17073.1859 kcal/mol (17061.8421 without restraints) Performing minimization step: 478. Total energy = 17055.4581 kcal/mol (17044.1203 without restraints) Performing minimization step: 479. Total energy = 17037.7715 kcal/mol (17026.4393 without restraints) Performing minimization step: 480. Total energy = 17020.1252 kcal/mol (17008.7989 without restraints) Performing minimization step: 481. Total energy = 17002.5197 kcal/mol (16991.1991 without restraints) Performing minimization step: 482. Total energy = 16984.9552 kcal/mol (16973.6403 without restraints) Performing minimization step: 483. Total energy = 16967.4305 kcal/mol (16956.1214 without restraints) Performing minimization step: 484. Total energy = 16949.9468 kcal/mol (16938.6436 without restraints) Performing minimization step: 485. Total energy = 16932.5031 kcal/mol (16921.2055 without restraints) Performing minimization step: 486. Total energy = 16915.0990 kcal/mol (16903.8071 without restraints) Performing minimization step: 487. Total energy = 16897.7352 kcal/mol (16886.4490 without restraints) Performing minimization step: 488. Total energy = 16880.4112 kcal/mol (16869.1307 without restraints) Performing minimization step: 489. Total energy = 16863.1265 kcal/mol (16851.8517 without restraints) Performing minimization step: 490. Total energy = 16845.8813 kcal/mol (16834.6122 without restraints) Performing minimization step: 491. Total energy = 16828.6761 kcal/mol (16817.4127 without restraints) Performing minimization step: 492. Total energy = 16811.5099 kcal/mol (16800.2520 without restraints) Performing minimization step: 493. Total energy = 16794.3832 kcal/mol (16783.1311 without restraints) Performing minimization step: 494. Total energy = 16777.2956 kcal/mol (16766.0491 without restraints) Performing minimization step: 495. Total energy = 16760.2472 kcal/mol (16749.0063 without restraints) Performing minimization step: 496. Total energy = 16743.2375 kcal/mol (16732.0022 without restraints) Performing minimization step: 497. Total energy = 16726.2668 kcal/mol (16715.0371 without restraints) Performing minimization step: 498. Total energy = 16709.3351 kcal/mol (16698.1112 without restraints) Performing minimization step: 499. Total energy = 16692.4420 kcal/mol (16681.2234 without restraints) Performing minimization step: 500. Total energy = 16675.5868 kcal/mol (16664.3737 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 501. Total energy = 16658.7697 kcal/mol (16647.5623 without restraints) Performing minimization step: 502. Total energy = 16641.9914 kcal/mol (16630.7894 without restraints) Performing minimization step: 503. Total energy = 16625.2513 kcal/mol (16614.0549 without restraints) Performing minimization step: 504. Total energy = 16608.5491 kcal/mol (16597.3583 without restraints) Performing minimization step: 505. Total energy = 16591.8848 kcal/mol (16580.6995 without restraints) Performing minimization step: 506. Total energy = 16575.2588 kcal/mol (16564.0790 without restraints) Performing minimization step: 507. Total energy = 16558.6698 kcal/mol (16547.4956 without restraints) Performing minimization step: 508. Total energy = 16542.1193 kcal/mol (16530.9503 without restraints) Performing minimization step: 509. Total energy = 16525.6060 kcal/mol (16514.4426 without restraints) Performing minimization step: 510. Total energy = 16509.1302 kcal/mol (16497.9723 without restraints) Performing minimization step: 511. Total energy = 16492.6916 kcal/mol (16481.5392 without restraints) Performing minimization step: 512. Total energy = 16476.2902 kcal/mol (16465.1432 without restraints) Performing minimization step: 513. Total energy = 16459.9261 kcal/mol (16448.7845 without restraints) Performing minimization step: 514. Total energy = 16443.5988 kcal/mol (16432.4625 without restraints) Performing minimization step: 515. Total energy = 16427.3083 kcal/mol (16416.1775 without restraints) Performing minimization step: 516. Total energy = 16411.0550 kcal/mol (16399.9296 without restraints) Performing minimization step: 517. Total energy = 16394.8377 kcal/mol (16383.7177 without restraints) Performing minimization step: 518. Total energy = 16378.6568 kcal/mol (16367.5421 without restraints) Performing minimization step: 519. Total energy = 16362.5132 kcal/mol (16351.4041 without restraints) Performing minimization step: 520. Total energy = 16346.4059 kcal/mol (16335.3021 without restraints) Performing minimization step: 521. Total energy = 16330.3346 kcal/mol (16319.2360 without restraints) Performing minimization step: 522. Total energy = 16314.2997 kcal/mol (16303.2065 without restraints) Performing minimization step: 523. Total energy = 16298.3006 kcal/mol (16287.2127 without restraints) Performing minimization step: 524. Total energy = 16282.3375 kcal/mol (16271.2549 without restraints) Performing minimization step: 525. Total energy = 16266.4100 kcal/mol (16255.3327 without restraints) Performing minimization step: 526. Total energy = 16250.5184 kcal/mol (16239.4463 without restraints) Performing minimization step: 527. Total energy = 16234.6623 kcal/mol (16223.5957 without restraints) Performing minimization step: 528. Total energy = 16218.8424 kcal/mol (16207.7810 without restraints) Performing minimization step: 529. Total energy = 16203.0577 kcal/mol (16192.0016 without restraints) Performing minimization step: 530. Total energy = 16187.3082 kcal/mol (16176.2572 without restraints) Performing minimization step: 531. Total energy = 16171.5939 kcal/mol (16160.5483 without restraints) Performing minimization step: 532. Total energy = 16155.9151 kcal/mol (16144.8748 without restraints) Performing minimization step: 533. Total energy = 16140.2713 kcal/mol (16129.2361 without restraints) Performing minimization step: 534. Total energy = 16124.6626 kcal/mol (16113.6326 without restraints) Performing minimization step: 535. Total energy = 16109.0889 kcal/mol (16098.0641 without restraints) Performing minimization step: 536. Total energy = 16093.5494 kcal/mol (16082.5299 without restraints) Performing minimization step: 537. Total energy = 16078.0449 kcal/mol (16067.0305 without restraints) Performing minimization step: 538. Total energy = 16062.5749 kcal/mol (16051.5658 without restraints) Performing minimization step: 539. Total energy = 16047.1393 kcal/mol (16036.1353 without restraints) Performing minimization step: 540. Total energy = 16031.7382 kcal/mol (16020.7394 without restraints) Performing minimization step: 541. Total energy = 16016.3714 kcal/mol (16005.3777 without restraints) Performing minimization step: 542. Total energy = 16001.0386 kcal/mol (15990.0503 without restraints) Performing minimization step: 543. Total energy = 15985.7403 kcal/mol (15974.7569 without restraints) Performing minimization step: 544. Total energy = 15970.4757 kcal/mol (15959.4975 without restraints) Performing minimization step: 545. Total energy = 15955.2452 kcal/mol (15944.2721 without restraints) Performing minimization step: 546. Total energy = 15940.0484 kcal/mol (15929.0804 without restraints) Performing minimization step: 547. Total energy = 15924.8856 kcal/mol (15913.9227 without restraints) Performing minimization step: 548. Total energy = 15909.7561 kcal/mol (15898.7982 without restraints) Performing minimization step: 549. Total energy = 15894.6605 kcal/mol (15883.7077 without restraints) Performing minimization step: 550. Total energy = 15879.5979 kcal/mol (15868.6502 without restraints) Performing minimization step: 551. Total energy = 15864.5687 kcal/mol (15853.6260 without restraints) Performing minimization step: 552. Total energy = 15849.5727 kcal/mol (15838.6352 without restraints) Performing minimization step: 553. Total energy = 15834.6102 kcal/mol (15823.6777 without restraints) Performing minimization step: 554. Total energy = 15819.6809 kcal/mol (15808.7533 without restraints) Performing minimization step: 555. Total energy = 15804.7843 kcal/mol (15793.8619 without restraints) Performing minimization step: 556. Total energy = 15789.9207 kcal/mol (15779.0033 without restraints) Performing minimization step: 557. Total energy = 15775.0908 kcal/mol (15764.1783 without restraints) Performing minimization step: 558. Total energy = 15760.2926 kcal/mol (15749.3851 without restraints) Performing minimization step: 559. Total energy = 15745.5272 kcal/mol (15734.6248 without restraints) Performing minimization step: 560. Total energy = 15730.7948 kcal/mol (15719.8974 without restraints) Performing minimization step: 561. Total energy = 15716.0945 kcal/mol (15705.2021 without restraints) Performing minimization step: 562. Total energy = 15701.4264 kcal/mol (15690.5389 without restraints) Performing minimization step: 563. Total energy = 15686.7906 kcal/mol (15675.9079 without restraints) Performing minimization step: 564. Total energy = 15672.1867 kcal/mol (15661.3091 without restraints) Performing minimization step: 565. Total energy = 15657.6152 kcal/mol (15646.7425 without restraints) Performing minimization step: 566. Total energy = 15643.0757 kcal/mol (15632.2080 without restraints) Performing minimization step: 567. Total energy = 15628.5681 kcal/mol (15617.7053 without restraints) Performing minimization step: 568. Total energy = 15614.0917 kcal/mol (15603.2337 without restraints) Performing minimization step: 569. Total energy = 15599.6475 kcal/mol (15588.7946 without restraints) Performing minimization step: 570. Total energy = 15585.2353 kcal/mol (15574.3873 without restraints) Performing minimization step: 571. Total energy = 15570.8545 kcal/mol (15560.0114 without restraints) Performing minimization step: 572. Total energy = 15556.5049 kcal/mol (15545.6667 without restraints) Performing minimization step: 573. Total energy = 15542.1866 kcal/mol (15531.3531 without restraints) Performing minimization step: 574. Total energy = 15527.9002 kcal/mol (15517.0717 without restraints) Performing minimization step: 575. Total energy = 15513.6445 kcal/mol (15502.8209 without restraints) Performing minimization step: 576. Total energy = 15499.4201 kcal/mol (15488.6013 without restraints) Performing minimization step: 577. Total energy = 15485.2263 kcal/mol (15474.4123 without restraints) Performing minimization step: 578. Total energy = 15471.0638 kcal/mol (15460.2547 without restraints) Performing minimization step: 579. Total energy = 15456.9323 kcal/mol (15446.1280 without restraints) Performing minimization step: 580. Total energy = 15442.8312 kcal/mol (15432.0316 without restraints) Performing minimization step: 581. Total energy = 15428.7613 kcal/mol (15417.9666 without restraints) Performing minimization step: 582. Total energy = 15414.7216 kcal/mol (15403.9317 without restraints) Performing minimization step: 583. Total energy = 15400.7123 kcal/mol (15389.9272 without restraints) Performing minimization step: 584. Total energy = 15386.7338 kcal/mol (15375.9535 without restraints) Performing minimization step: 585. Total energy = 15372.7852 kcal/mol (15362.0095 without restraints) Performing minimization step: 586. Total energy = 15358.8667 kcal/mol (15348.0959 without restraints) Performing minimization step: 587. Total energy = 15344.9790 kcal/mol (15334.2131 without restraints) Performing minimization step: 588. Total energy = 15331.1214 kcal/mol (15320.3602 without restraints) Performing minimization step: 589. Total energy = 15317.2937 kcal/mol (15306.5372 without restraints) Performing minimization step: 590. Total energy = 15303.4959 kcal/mol (15292.7441 without restraints) Performing minimization step: 591. Total energy = 15289.7279 kcal/mol (15278.9808 without restraints) Performing minimization step: 592. Total energy = 15275.9895 kcal/mol (15265.2472 without restraints) Performing minimization step: 593. Total energy = 15262.2810 kcal/mol (15251.5436 without restraints) Performing minimization step: 594. Total energy = 15248.6023 kcal/mol (15237.8695 without restraints) Performing minimization step: 595. Total energy = 15234.9529 kcal/mol (15224.2247 without restraints) Performing minimization step: 596. Total energy = 15221.3325 kcal/mol (15210.6089 without restraints) Performing minimization step: 597. Total energy = 15207.7416 kcal/mol (15197.0227 without restraints) Performing minimization step: 598. Total energy = 15194.1801 kcal/mol (15183.4658 without restraints) Performing minimization step: 599. Total energy = 15180.6475 kcal/mol (15169.9380 without restraints) Performing minimization step: 600. Total energy = 15167.1442 kcal/mol (15156.4394 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 601. Total energy = 15153.6701 kcal/mol (15142.9699 without restraints) Performing minimization step: 602. Total energy = 15140.2248 kcal/mol (15129.5292 without restraints) Performing minimization step: 603. Total energy = 15126.8076 kcal/mol (15116.1167 without restraints) Performing minimization step: 604. Total energy = 15113.4196 kcal/mol (15102.7333 without restraints) Performing minimization step: 605. Total energy = 15100.0607 kcal/mol (15089.3791 without restraints) Performing minimization step: 606. Total energy = 15086.7307 kcal/mol (15076.0536 without restraints) Performing minimization step: 607. Total energy = 15073.4285 kcal/mol (15062.7561 without restraints) Performing minimization step: 608. Total energy = 15060.1550 kcal/mol (15049.4872 without restraints) Performing minimization step: 609. Total energy = 15046.9099 kcal/mol (15036.2467 without restraints) Performing minimization step: 610. Total energy = 15033.6930 kcal/mol (15023.0343 without restraints) Performing minimization step: 611. Total energy = 15020.5042 kcal/mol (15009.8501 without restraints) Performing minimization step: 612. Total energy = 15007.3435 kcal/mol (14996.6939 without restraints) Performing minimization step: 613. Total energy = 14994.2107 kcal/mol (14983.5657 without restraints) Performing minimization step: 614. Total energy = 14981.1058 kcal/mol (14970.4653 without restraints) Performing minimization step: 615. Total energy = 14968.0288 kcal/mol (14957.3929 without restraints) Performing minimization step: 616. Total energy = 14954.9798 kcal/mol (14944.3485 without restraints) Performing minimization step: 617. Total energy = 14941.9588 kcal/mol (14931.3320 without restraints) Performing minimization step: 618. Total energy = 14928.9652 kcal/mol (14918.3429 without restraints) Performing minimization step: 619. Total energy = 14915.9986 kcal/mol (14905.3805 without restraints) Performing minimization step: 620. Total energy = 14903.0601 kcal/mol (14892.4468 without restraints) Performing minimization step: 621. Total energy = 14890.1485 kcal/mol (14879.5399 without restraints) Performing minimization step: 622. Total energy = 14877.2651 kcal/mol (14866.6608 without restraints) Performing minimization step: 623. Total energy = 14864.4080 kcal/mol (14853.8082 without restraints) Performing minimization step: 624. Total energy = 14851.5784 kcal/mol (14840.9830 without restraints) Performing minimization step: 625. Total energy = 14838.7756 kcal/mol (14828.1847 without restraints) Performing minimization step: 626. Total energy = 14826.0008 kcal/mol (14815.4145 without restraints) Performing minimization step: 627. Total energy = 14813.2523 kcal/mol (14802.6704 without restraints) Performing minimization step: 628. Total energy = 14800.5307 kcal/mol (14789.9532 without restraints) Performing minimization step: 629. Total energy = 14787.8356 kcal/mol (14777.2625 without restraints) Performing minimization step: 630. Total energy = 14775.1674 kcal/mol (14764.5989 without restraints) Performing minimization step: 631. Total energy = 14762.5259 kcal/mol (14751.9617 without restraints) Performing minimization step: 632. Total energy = 14749.9107 kcal/mol (14739.3508 without restraints) Performing minimization step: 633. Total energy = 14737.3220 kcal/mol (14726.7666 without restraints) Performing minimization step: 634. Total energy = 14724.7597 kcal/mol (14714.2088 without restraints) Performing minimization step: 635. Total energy = 14712.2237 kcal/mol (14701.6773 without restraints) Performing minimization step: 636. Total energy = 14699.7146 kcal/mol (14689.1727 without restraints) Performing minimization step: 637. Total energy = 14687.2313 kcal/mol (14676.6936 without restraints) Performing minimization step: 638. Total energy = 14674.7739 kcal/mol (14664.2406 without restraints) Performing minimization step: 639. Total energy = 14662.3427 kcal/mol (14651.8137 without restraints) Performing minimization step: 640. Total energy = 14649.9358 kcal/mol (14639.4111 without restraints) Performing minimization step: 641. Total energy = 14637.5560 kcal/mol (14627.0357 without restraints) Performing minimization step: 642. Total energy = 14625.2020 kcal/mol (14614.6859 without restraints) Performing minimization step: 643. Total energy = 14612.8739 kcal/mol (14602.3623 without restraints) Performing minimization step: 644. Total energy = 14600.5717 kcal/mol (14590.0644 without restraints) Performing minimization step: 645. Total energy = 14588.2950 kcal/mol (14577.7920 without restraints) Performing minimization step: 646. Total energy = 14576.0429 kcal/mol (14565.5443 without restraints) Performing minimization step: 647. Total energy = 14563.8169 kcal/mol (14553.3227 without restraints) Performing minimization step: 648. Total energy = 14551.6159 kcal/mol (14541.1259 without restraints) Performing minimization step: 649. Total energy = 14539.4404 kcal/mol (14528.9546 without restraints) Performing minimization step: 650. Total energy = 14527.2895 kcal/mol (14516.8081 without restraints) Performing minimization step: 651. Total energy = 14515.1648 kcal/mol (14504.6875 without restraints) Performing minimization step: 652. Total energy = 14503.0640 kcal/mol (14492.5912 without restraints) Performing minimization step: 653. Total energy = 14490.9887 kcal/mol (14480.5201 without restraints) Performing minimization step: 654. Total energy = 14478.9386 kcal/mol (14468.4743 without restraints) Performing minimization step: 655. Total energy = 14466.9130 kcal/mol (14456.4530 without restraints) Performing minimization step: 656. Total energy = 14454.9122 kcal/mol (14444.4566 without restraints) Performing minimization step: 657. Total energy = 14442.9360 kcal/mol (14432.4844 without restraints) Performing minimization step: 658. Total energy = 14430.9845 kcal/mol (14420.5372 without restraints) Performing minimization step: 659. Total energy = 14419.0572 kcal/mol (14408.6141 without restraints) Performing minimization step: 660. Total energy = 14407.1551 kcal/mol (14396.7164 without restraints) Performing minimization step: 661. Total energy = 14395.2772 kcal/mol (14384.8426 without restraints) Performing minimization step: 662. Total energy = 14383.4230 kcal/mol (14372.9926 without restraints) Performing minimization step: 663. Total energy = 14371.5931 kcal/mol (14361.1669 without restraints) Performing minimization step: 664. Total energy = 14359.7871 kcal/mol (14349.3652 without restraints) Performing minimization step: 665. Total energy = 14348.0056 kcal/mol (14337.5876 without restraints) Performing minimization step: 666. Total energy = 14336.2480 kcal/mol (14325.8344 without restraints) Performing minimization step: 667. Total energy = 14324.5143 kcal/mol (14314.1048 without restraints) Performing minimization step: 668. Total energy = 14312.8048 kcal/mol (14302.3995 without restraints) Performing minimization step: 669. Total energy = 14301.1191 kcal/mol (14290.7180 without restraints) Performing minimization step: 670. Total energy = 14289.4567 kcal/mol (14279.0598 without restraints) Performing minimization step: 671. Total energy = 14277.8181 kcal/mol (14267.4253 without restraints) Performing minimization step: 672. Total energy = 14266.2029 kcal/mol (14255.8142 without restraints) Performing minimization step: 673. Total energy = 14254.6114 kcal/mol (14244.2269 without restraints) Performing minimization step: 674. Total energy = 14243.0432 kcal/mol (14232.6629 without restraints) Performing minimization step: 675. Total energy = 14231.4989 kcal/mol (14221.1226 without restraints) Performing minimization step: 676. Total energy = 14219.9777 kcal/mol (14209.6057 without restraints) Performing minimization step: 677. Total energy = 14208.4798 kcal/mol (14198.1118 without restraints) Performing minimization step: 678. Total energy = 14197.0050 kcal/mol (14186.6411 without restraints) Performing minimization step: 679. Total energy = 14185.5533 kcal/mol (14175.1936 without restraints) Performing minimization step: 680. Total energy = 14174.1251 kcal/mol (14163.7694 without restraints) Performing minimization step: 681. Total energy = 14162.7194 kcal/mol (14152.3678 without restraints) Performing minimization step: 682. Total energy = 14151.3365 kcal/mol (14140.9889 without restraints) Performing minimization step: 683. Total energy = 14139.9760 kcal/mol (14129.6325 without restraints) Performing minimization step: 684. Total energy = 14128.6393 kcal/mol (14118.3000 without restraints) Performing minimization step: 685. Total energy = 14117.3248 kcal/mol (14106.9896 without restraints) Performing minimization step: 686. Total energy = 14106.0328 kcal/mol (14095.7016 without restraints) Performing minimization step: 687. Total energy = 14094.7638 kcal/mol (14084.4367 without restraints) Performing minimization step: 688. Total energy = 14083.5166 kcal/mol (14073.1935 without restraints) Performing minimization step: 689. Total energy = 14072.2923 kcal/mol (14061.9732 without restraints) Performing minimization step: 690. Total energy = 14061.0902 kcal/mol (14050.7751 without restraints) Performing minimization step: 691. Total energy = 14049.9105 kcal/mol (14039.5992 without restraints) Performing minimization step: 692. Total energy = 14038.7525 kcal/mol (14028.4455 without restraints) Performing minimization step: 693. Total energy = 14027.6173 kcal/mol (14017.3144 without restraints) Performing minimization step: 694. Total energy = 14016.5035 kcal/mol (14006.2044 without restraints) Performing minimization step: 695. Total energy = 14005.4117 kcal/mol (13995.1166 without restraints) Performing minimization step: 696. Total energy = 13994.3421 kcal/mol (13984.0510 without restraints) Performing minimization step: 697. Total energy = 13983.2943 kcal/mol (13973.0072 without restraints) Performing minimization step: 698. Total energy = 13972.2687 kcal/mol (13961.9858 without restraints) Performing minimization step: 699. Total energy = 13961.2648 kcal/mol (13950.9857 without restraints) Performing minimization step: 700. Total energy = 13950.2826 kcal/mol (13940.0075 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 701. Total energy = 13939.3223 kcal/mol (13929.0512 without restraints) Performing minimization step: 702. Total energy = 13928.3829 kcal/mol (13918.1158 without restraints) Performing minimization step: 703. Total energy = 13917.4655 kcal/mol (13907.2023 without restraints) Performing minimization step: 704. Total energy = 13906.5691 kcal/mol (13896.3100 without restraints) Performing minimization step: 705. Total energy = 13895.6948 kcal/mol (13885.4395 without restraints) Performing minimization step: 706. Total energy = 13884.8416 kcal/mol (13874.5902 without restraints) Performing minimization step: 707. Total energy = 13874.0094 kcal/mol (13863.7620 without restraints) Performing minimization step: 708. Total energy = 13863.1982 kcal/mol (13852.9547 without restraints) Performing minimization step: 709. Total energy = 13852.4083 kcal/mol (13842.1688 without restraints) Performing minimization step: 710. Total energy = 13841.6391 kcal/mol (13831.4034 without restraints) Performing minimization step: 711. Total energy = 13830.8911 kcal/mol (13820.6592 without restraints) Performing minimization step: 712. Total energy = 13820.1642 kcal/mol (13809.9364 without restraints) Performing minimization step: 713. Total energy = 13809.4579 kcal/mol (13799.2339 without restraints) Performing minimization step: 714. Total energy = 13798.7719 kcal/mol (13788.5516 without restraints) Performing minimization step: 715. Total energy = 13788.1071 kcal/mol (13777.8909 without restraints) Performing minimization step: 716. Total energy = 13777.4632 kcal/mol (13767.2509 without restraints) Performing minimization step: 717. Total energy = 13766.8399 kcal/mol (13756.6314 without restraints) Performing minimization step: 718. Total energy = 13756.2368 kcal/mol (13746.0322 without restraints) Performing minimization step: 719. Total energy = 13745.6546 kcal/mol (13735.4540 without restraints) Performing minimization step: 720. Total energy = 13735.0927 kcal/mol (13724.8960 without restraints) Performing minimization step: 721. Total energy = 13724.5513 kcal/mol (13714.3583 without restraints) Performing minimization step: 722. Total energy = 13714.0304 kcal/mol (13703.8414 without restraints) Performing minimization step: 723. Total energy = 13703.5291 kcal/mol (13693.3438 without restraints) Performing minimization step: 724. Total energy = 13693.0481 kcal/mol (13682.8666 without restraints) Performing minimization step: 725. Total energy = 13682.5872 kcal/mol (13672.4095 without restraints) Performing minimization step: 726. Total energy = 13672.1469 kcal/mol (13661.9731 without restraints) Performing minimization step: 727. Total energy = 13661.7261 kcal/mol (13651.5561 without restraints) Performing minimization step: 728. Total energy = 13651.3261 kcal/mol (13641.1599 without restraints) Performing minimization step: 729. Total energy = 13640.9449 kcal/mol (13630.7825 without restraints) Performing minimization step: 730. Total energy = 13630.5838 kcal/mol (13620.4252 without restraints) Performing minimization step: 731. Total energy = 13620.2424 kcal/mol (13610.0877 without restraints) Performing minimization step: 732. Total energy = 13609.9210 kcal/mol (13599.7696 without restraints) Performing minimization step: 733. Total energy = 13599.6190 kcal/mol (13589.4719 without restraints) Performing minimization step: 734. Total energy = 13589.3368 kcal/mol (13579.1934 without restraints) Performing minimization step: 735. Total energy = 13579.0739 kcal/mol (13568.9342 without restraints) Performing minimization step: 736. Total energy = 13568.8305 kcal/mol (13558.6946 without restraints) Performing minimization step: 737. Total energy = 13558.6066 kcal/mol (13548.4745 without restraints) Performing minimization step: 738. Total energy = 13548.4019 kcal/mol (13538.2735 without restraints) Performing minimization step: 739. Total energy = 13538.2165 kcal/mol (13528.0919 without restraints) Performing minimization step: 740. Total energy = 13528.0505 kcal/mol (13517.9296 without restraints) Performing minimization step: 741. Total energy = 13517.9036 kcal/mol (13507.7865 without restraints) Performing minimization step: 742. Total energy = 13507.7757 kcal/mol (13497.6622 without restraints) Performing minimization step: 743. Total energy = 13497.6665 kcal/mol (13487.5568 without restraints) Performing minimization step: 744. Total energy = 13487.5760 kcal/mol (13477.4700 without restraints) Performing minimization step: 745. Total energy = 13477.5047 kcal/mol (13467.4024 without restraints) Performing minimization step: 746. Total energy = 13467.4526 kcal/mol (13457.3540 without restraints) Performing minimization step: 747. Total energy = 13457.4192 kcal/mol (13447.3243 without restraints) Performing minimization step: 748. Total energy = 13447.4039 kcal/mol (13437.3127 without restraints) Performing minimization step: 749. Total energy = 13437.4075 kcal/mol (13427.3201 without restraints) Performing minimization step: 750. Total energy = 13427.4307 kcal/mol (13417.3469 without restraints) Performing minimization step: 751. Total energy = 13417.4725 kcal/mol (13407.3924 without restraints) Performing minimization step: 752. Total energy = 13407.5314 kcal/mol (13397.4550 without restraints) Performing minimization step: 753. Total energy = 13397.6097 kcal/mol (13387.5370 without restraints) Performing minimization step: 754. Total energy = 13387.7064 kcal/mol (13377.6374 without restraints) Performing minimization step: 755. Total energy = 13377.8209 kcal/mol (13367.7553 without restraints) Performing minimization step: 756. Total energy = 13367.9542 kcal/mol (13357.8925 without restraints) Performing minimization step: 757. Total energy = 13358.1061 kcal/mol (13348.0481 without restraints) Performing minimization step: 758. Total energy = 13348.2760 kcal/mol (13338.2216 without restraints) Performing minimization step: 759. Total energy = 13338.4644 kcal/mol (13328.4137 without restraints) Performing minimization step: 760. Total energy = 13328.6704 kcal/mol (13318.6233 without restraints) Performing minimization step: 761. Total energy = 13318.8946 kcal/mol (13308.8511 without restraints) Performing minimization step: 762. Total energy = 13309.1364 kcal/mol (13299.0967 without restraints) Performing minimization step: 763. Total energy = 13299.3966 kcal/mol (13289.3604 without restraints) Performing minimization step: 764. Total energy = 13289.6747 kcal/mol (13279.6421 without restraints) Performing minimization step: 765. Total energy = 13279.9703 kcal/mol (13269.9413 without restraints) Performing minimization step: 766. Total energy = 13270.2834 kcal/mol (13260.2580 without restraints) Performing minimization step: 767. Total energy = 13260.6147 kcal/mol (13250.5929 without restraints) Performing minimization step: 768. Total energy = 13250.9632 kcal/mol (13240.9450 without restraints) Performing minimization step: 769. Total energy = 13241.3294 kcal/mol (13231.3147 without restraints) Performing minimization step: 770. Total energy = 13231.7125 kcal/mol (13221.7015 without restraints) Performing minimization step: 771. Total energy = 13222.1135 kcal/mol (13212.1060 without restraints) Performing minimization step: 772. Total energy = 13212.5321 kcal/mol (13202.5282 without restraints) Performing minimization step: 773. Total energy = 13202.9681 kcal/mol (13192.9679 without restraints) Performing minimization step: 774. Total energy = 13193.4219 kcal/mol (13183.4252 without restraints) Performing minimization step: 775. Total energy = 13183.8923 kcal/mol (13173.8991 without restraints) Performing minimization step: 776. Total energy = 13174.3804 kcal/mol (13164.3909 without restraints) Performing minimization step: 777. Total energy = 13164.8855 kcal/mol (13154.8996 without restraints) Performing minimization step: 778. Total energy = 13155.4078 kcal/mol (13145.4254 without restraints) Performing minimization step: 779. Total energy = 13145.9471 kcal/mol (13135.9682 without restraints) Performing minimization step: 780. Total energy = 13136.5035 kcal/mol (13126.5282 without restraints) Performing minimization step: 781. Total energy = 13127.0771 kcal/mol (13117.1054 without restraints) Performing minimization step: 782. Total energy = 13117.6678 kcal/mol (13107.6995 without restraints) Performing minimization step: 783. Total energy = 13108.2754 kcal/mol (13098.3107 without restraints) Performing minimization step: 784. Total energy = 13098.8989 kcal/mol (13088.9377 without restraints) Performing minimization step: 785. Total energy = 13089.5393 kcal/mol (13079.5815 without restraints) Performing minimization step: 786. Total energy = 13080.1965 kcal/mol (13070.2423 without restraints) Performing minimization step: 787. Total energy = 13070.8703 kcal/mol (13060.9197 without restraints) Performing minimization step: 788. Total energy = 13061.5607 kcal/mol (13051.6135 without restraints) Performing minimization step: 789. Total energy = 13052.2682 kcal/mol (13042.3247 without restraints) Performing minimization step: 790. Total energy = 13042.9921 kcal/mol (13033.0519 without restraints) Performing minimization step: 791. Total energy = 13033.7324 kcal/mol (13023.7958 without restraints) Performing minimization step: 792. Total energy = 13024.4890 kcal/mol (13014.5559 without restraints) Performing minimization step: 793. Total energy = 13015.2619 kcal/mol (13005.3322 without restraints) Performing minimization step: 794. Total energy = 13006.0516 kcal/mol (12996.1254 without restraints) Performing minimization step: 795. Total energy = 12996.8570 kcal/mol (12986.9342 without restraints) Performing minimization step: 796. Total energy = 12987.6786 kcal/mol (12977.7593 without restraints) Performing minimization step: 797. Total energy = 12978.5164 kcal/mol (12968.6007 without restraints) Performing minimization step: 798. Total energy = 12969.3705 kcal/mol (12959.4582 without restraints) Performing minimization step: 799. Total energy = 12960.2407 kcal/mol (12950.3318 without restraints) Performing minimization step: 800. Total energy = 12951.1272 kcal/mol (12941.2218 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 801. Total energy = 12942.0292 kcal/mol (12932.1272 without restraints) Performing minimization step: 802. Total energy = 12932.9472 kcal/mol (12923.0487 without restraints) Performing minimization step: 803. Total energy = 12923.8808 kcal/mol (12913.9857 without restraints) Performing minimization step: 804. Total energy = 12914.8304 kcal/mol (12904.9387 without restraints) Performing minimization step: 805. Total energy = 12905.7961 kcal/mol (12895.9079 without restraints) Performing minimization step: 806. Total energy = 12896.7772 kcal/mol (12886.8922 without restraints) Performing minimization step: 807. Total energy = 12887.7736 kcal/mol (12877.8923 without restraints) Performing minimization step: 808. Total energy = 12878.7862 kcal/mol (12868.9081 without restraints) Performing minimization step: 809. Total energy = 12869.8147 kcal/mol (12859.9405 without restraints) Performing minimization step: 810. Total energy = 12860.8587 kcal/mol (12850.9877 without restraints) Performing minimization step: 811. Total energy = 12851.9177 kcal/mol (12842.0500 without restraints) Performing minimization step: 812. Total energy = 12842.9923 kcal/mol (12833.1279 without restraints) Performing minimization step: 813. Total energy = 12834.0823 kcal/mol (12824.2214 without restraints) Performing minimization step: 814. Total energy = 12825.1873 kcal/mol (12815.3298 without restraints) Performing minimization step: 815. Total energy = 12816.3081 kcal/mol (12806.4541 without restraints) Performing minimization step: 816. Total energy = 12807.4443 kcal/mol (12797.5936 without restraints) Performing minimization step: 817. Total energy = 12798.5955 kcal/mol (12788.7481 without restraints) Performing minimization step: 818. Total energy = 12789.7622 kcal/mol (12779.9183 without restraints) Performing minimization step: 819. Total energy = 12780.9440 kcal/mol (12771.1036 without restraints) Performing minimization step: 820. Total energy = 12772.1409 kcal/mol (12762.3037 without restraints) Performing minimization step: 821. Total energy = 12763.3528 kcal/mol (12753.5190 without restraints) Performing minimization step: 822. Total energy = 12754.5797 kcal/mol (12744.7492 without restraints) Performing minimization step: 823. Total energy = 12745.8216 kcal/mol (12735.9945 without restraints) Performing minimization step: 824. Total energy = 12737.0785 kcal/mol (12727.2548 without restraints) Performing minimization step: 825. Total energy = 12728.3500 kcal/mol (12718.5296 without restraints) Performing minimization step: 826. Total energy = 12719.6363 kcal/mol (12709.8192 without restraints) Performing minimization step: 827. Total energy = 12710.9380 kcal/mol (12701.1243 without restraints) Performing minimization step: 828. Total energy = 12702.2537 kcal/mol (12692.4433 without restraints) Performing minimization step: 829. Total energy = 12693.5842 kcal/mol (12683.7770 without restraints) Performing minimization step: 830. Total energy = 12684.9296 kcal/mol (12675.1259 without restraints) Performing minimization step: 831. Total energy = 12676.2894 kcal/mol (12666.4890 without restraints) Performing minimization step: 832. Total energy = 12667.6639 kcal/mol (12657.8670 without restraints) Performing minimization step: 833. Total energy = 12659.0531 kcal/mol (12649.2593 without restraints) Performing minimization step: 834. Total energy = 12650.4567 kcal/mol (12640.6663 without restraints) Performing minimization step: 835. Total energy = 12641.8746 kcal/mol (12632.0875 without restraints) Performing minimization step: 836. Total energy = 12633.3074 kcal/mol (12623.5235 without restraints) Performing minimization step: 837. Total energy = 12624.7541 kcal/mol (12614.9737 without restraints) Performing minimization step: 838. Total energy = 12616.2158 kcal/mol (12606.4388 without restraints) Performing minimization step: 839. Total energy = 12607.6913 kcal/mol (12597.9174 without restraints) Performing minimization step: 840. Total energy = 12599.1816 kcal/mol (12589.4109 without restraints) Performing minimization step: 841. Total energy = 12590.6855 kcal/mol (12580.9182 without restraints) Performing minimization step: 842. Total energy = 12582.2035 kcal/mol (12572.4394 without restraints) Performing minimization step: 843. Total energy = 12573.7359 kcal/mol (12563.9751 without restraints) Performing minimization step: 844. Total energy = 12565.2821 kcal/mol (12555.5246 without restraints) Performing minimization step: 845. Total energy = 12556.8423 kcal/mol (12547.0881 without restraints) Performing minimization step: 846. Total energy = 12548.4166 kcal/mol (12538.6656 without restraints) Performing minimization step: 847. Total energy = 12540.0048 kcal/mol (12530.2571 without restraints) Performing minimization step: 848. Total energy = 12531.6073 kcal/mol (12521.8629 without restraints) Performing minimization step: 849. Total energy = 12523.2232 kcal/mol (12513.4821 without restraints) Performing minimization step: 850. Total energy = 12514.8535 kcal/mol (12505.1156 without restraints) Performing minimization step: 851. Total energy = 12506.4976 kcal/mol (12496.7630 without restraints) Performing minimization step: 852. Total energy = 12498.1552 kcal/mol (12488.4238 without restraints) Performing minimization step: 853. Total energy = 12489.8268 kcal/mol (12480.0986 without restraints) Performing minimization step: 854. Total energy = 12481.5118 kcal/mol (12471.7868 without restraints) Performing minimization step: 855. Total energy = 12473.2109 kcal/mol (12463.4893 without restraints) Performing minimization step: 856. Total energy = 12464.9232 kcal/mol (12455.2048 without restraints) Performing minimization step: 857. Total energy = 12456.6497 kcal/mol (12446.9345 without restraints) Performing minimization step: 858. Total energy = 12448.3888 kcal/mol (12438.6767 without restraints) Performing minimization step: 859. Total energy = 12440.1414 kcal/mol (12430.4326 without restraints) Performing minimization step: 860. Total energy = 12431.9074 kcal/mol (12422.2015 without restraints) Performing minimization step: 861. Total energy = 12423.6864 kcal/mol (12413.9837 without restraints) Performing minimization step: 862. Total energy = 12415.4793 kcal/mol (12405.7803 without restraints) Performing minimization step: 863. Total energy = 12407.2859 kcal/mol (12397.5901 without restraints) Performing minimization step: 864. Total energy = 12399.1058 kcal/mol (12389.4131 without restraints) Performing minimization step: 865. Total energy = 12390.9391 kcal/mol (12381.2496 without restraints) Performing minimization step: 866. Total energy = 12382.7854 kcal/mol (12373.0991 without restraints) Performing minimization step: 867. Total energy = 12374.6447 kcal/mol (12364.9616 without restraints) Performing minimization step: 868. Total energy = 12366.5175 kcal/mol (12356.8377 without restraints) Performing minimization step: 869. Total energy = 12358.4032 kcal/mol (12348.7266 without restraints) Performing minimization step: 870. Total energy = 12350.3019 kcal/mol (12340.6284 without restraints) Performing minimization step: 871. Total energy = 12342.2139 kcal/mol (12332.5436 without restraints) Performing minimization step: 872. Total energy = 12334.1390 kcal/mol (12324.4720 without restraints) Performing minimization step: 873. Total energy = 12326.0771 kcal/mol (12316.4132 without restraints) Performing minimization step: 874. Total energy = 12318.0277 kcal/mol (12308.3669 without restraints) Performing minimization step: 875. Total energy = 12309.9914 kcal/mol (12300.3338 without restraints) Performing minimization step: 876. Total energy = 12301.9687 kcal/mol (12292.3147 without restraints) Performing minimization step: 877. Total energy = 12293.9588 kcal/mol (12284.3077 without restraints) Performing minimization step: 878. Total energy = 12285.9613 kcal/mol (12276.3132 without restraints) Performing minimization step: 879. Total energy = 12277.9760 kcal/mol (12268.3308 without restraints) Performing minimization step: 880. Total energy = 12270.0036 kcal/mol (12260.3618 without restraints) Performing minimization step: 881. Total energy = 12262.0445 kcal/mol (12252.4058 without restraints) Performing minimization step: 882. Total energy = 12254.0975 kcal/mol (12244.4620 without restraints) Performing minimization step: 883. Total energy = 12246.1632 kcal/mol (12236.5308 without restraints) Performing minimization step: 884. Total energy = 12238.2419 kcal/mol (12228.6128 without restraints) Performing minimization step: 885. Total energy = 12230.3330 kcal/mol (12220.7068 without restraints) Performing minimization step: 886. Total energy = 12222.4363 kcal/mol (12212.8136 without restraints) Performing minimization step: 887. Total energy = 12214.5529 kcal/mol (12204.9331 without restraints) Performing minimization step: 888. Total energy = 12206.6813 kcal/mol (12197.0646 without restraints) Performing minimization step: 889. Total energy = 12198.8220 kcal/mol (12189.2087 without restraints) Performing minimization step: 890. Total energy = 12190.9754 kcal/mol (12181.3650 without restraints) Performing minimization step: 891. Total energy = 12183.1412 kcal/mol (12173.5340 without restraints) Performing minimization step: 892. Total energy = 12175.3189 kcal/mol (12165.7148 without restraints) Performing minimization step: 893. Total energy = 12167.5091 kcal/mol (12157.9080 without restraints) Performing minimization step: 894. Total energy = 12159.7117 kcal/mol (12150.1138 without restraints) Performing minimization step: 895. Total energy = 12151.9264 kcal/mol (12142.3315 without restraints) Performing minimization step: 896. Total energy = 12144.1532 kcal/mol (12134.5615 without restraints) Performing minimization step: 897. Total energy = 12136.3924 kcal/mol (12126.8038 without restraints) Performing minimization step: 898. Total energy = 12128.6436 kcal/mol (12119.0581 without restraints) Performing minimization step: 899. Total energy = 12120.9071 kcal/mol (12111.3247 without restraints) Performing minimization step: 900. Total energy = 12113.1822 kcal/mol (12103.6029 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 901. Total energy = 12105.4695 kcal/mol (12095.8933 without restraints) Performing minimization step: 902. Total energy = 12097.7687 kcal/mol (12088.1955 without restraints) Performing minimization step: 903. Total energy = 12090.0802 kcal/mol (12080.5103 without restraints) Performing minimization step: 904. Total energy = 12082.4035 kcal/mol (12072.8366 without restraints) Performing minimization step: 905. Total energy = 12074.7386 kcal/mol (12065.1748 without restraints) Performing minimization step: 906. Total energy = 12067.0858 kcal/mol (12057.5250 without restraints) Performing minimization step: 907. Total energy = 12059.4447 kcal/mol (12049.8869 without restraints) Performing minimization step: 908. Total energy = 12051.8155 kcal/mol (12042.2608 without restraints) Performing minimization step: 909. Total energy = 12044.1975 kcal/mol (12034.6460 without restraints) Performing minimization step: 910. Total energy = 12036.5918 kcal/mol (12027.0433 without restraints) Performing minimization step: 911. Total energy = 12028.9976 kcal/mol (12019.4522 without restraints) Performing minimization step: 912. Total energy = 12021.4150 kcal/mol (12011.8726 without restraints) Performing minimization step: 913. Total energy = 12013.8437 kcal/mol (12004.3044 without restraints) Performing minimization step: 914. Total energy = 12006.2847 kcal/mol (11996.7485 without restraints) Performing minimization step: 915. Total energy = 11998.7372 kcal/mol (11989.2039 without restraints) Performing minimization step: 916. Total energy = 11991.2008 kcal/mol (11981.6706 without restraints) Performing minimization step: 917. Total energy = 11983.6763 kcal/mol (11974.1491 without restraints) Performing minimization step: 918. Total energy = 11976.1633 kcal/mol (11966.6392 without restraints) Performing minimization step: 919. Total energy = 11968.6617 kcal/mol (11959.1406 without restraints) Performing minimization step: 920. Total energy = 11961.1714 kcal/mol (11951.6535 without restraints) Performing minimization step: 921. Total energy = 11953.6926 kcal/mol (11944.1778 without restraints) Performing minimization step: 922. Total energy = 11946.2256 kcal/mol (11936.7137 without restraints) Performing minimization step: 923. Total energy = 11938.7694 kcal/mol (11929.2605 without restraints) Performing minimization step: 924. Total energy = 11931.3247 kcal/mol (11921.8187 without restraints) Performing minimization step: 925. Total energy = 11923.8913 kcal/mol (11914.3885 without restraints) Performing minimization step: 926. Total energy = 11916.4691 kcal/mol (11906.9694 without restraints) Performing minimization step: 927. Total energy = 11909.0582 kcal/mol (11899.5615 without restraints) Performing minimization step: 928. Total energy = 11901.6589 kcal/mol (11892.1651 without restraints) Performing minimization step: 929. Total energy = 11894.2705 kcal/mol (11884.7798 without restraints) Performing minimization step: 930. Total energy = 11886.8933 kcal/mol (11877.4056 without restraints) Performing minimization step: 931. Total energy = 11879.5272 kcal/mol (11870.0425 without restraints) Performing minimization step: 932. Total energy = 11872.1720 kcal/mol (11862.6901 without restraints) Performing minimization step: 933. Total energy = 11864.8279 kcal/mol (11855.3494 without restraints) Performing minimization step: 934. Total energy = 11857.4952 kcal/mol (11848.0195 without restraints) Performing minimization step: 935. Total energy = 11850.1733 kcal/mol (11840.7006 without restraints) Performing minimization step: 936. Total energy = 11842.8626 kcal/mol (11833.3929 without restraints) Performing minimization step: 937. Total energy = 11835.5627 kcal/mol (11826.0960 without restraints) Performing minimization step: 938. Total energy = 11828.2735 kcal/mol (11818.8098 without restraints) Performing minimization step: 939. Total energy = 11820.9954 kcal/mol (11811.5347 without restraints) Performing minimization step: 940. Total energy = 11813.7283 kcal/mol (11804.2706 without restraints) Performing minimization step: 941. Total energy = 11806.4719 kcal/mol (11797.0170 without restraints) Performing minimization step: 942. Total energy = 11799.2261 kcal/mol (11789.7743 without restraints) Performing minimization step: 943. Total energy = 11791.9916 kcal/mol (11782.5428 without restraints) Performing minimization step: 944. Total energy = 11784.7678 kcal/mol (11775.3220 without restraints) Performing minimization step: 945. Total energy = 11777.5545 kcal/mol (11768.1117 without restraints) Performing minimization step: 946. Total energy = 11770.3520 kcal/mol (11760.9121 without restraints) Performing minimization step: 947. Total energy = 11763.1603 kcal/mol (11753.7233 without restraints) Performing minimization step: 948. Total energy = 11755.9790 kcal/mol (11746.5451 without restraints) Performing minimization step: 949. Total energy = 11748.8082 kcal/mol (11739.3772 without restraints) Performing minimization step: 950. Total energy = 11741.6481 kcal/mol (11732.2200 without restraints) Performing minimization step: 951. Total energy = 11734.4982 kcal/mol (11725.0732 without restraints) Performing minimization step: 952. Total energy = 11727.3595 kcal/mol (11717.9374 without restraints) Performing minimization step: 953. Total energy = 11720.2312 kcal/mol (11710.8121 without restraints) Performing minimization step: 954. Total energy = 11713.1146 kcal/mol (11703.6987 without restraints) Performing minimization step: 955. Total energy = 11706.0075 kcal/mol (11696.5943 without restraints) Performing minimization step: 956. Total energy = 11698.9109 kcal/mol (11689.5007 without restraints) Performing minimization step: 957. Total energy = 11691.8250 kcal/mol (11682.4178 without restraints) Performing minimization step: 958. Total energy = 11684.7493 kcal/mol (11675.3449 without restraints) Performing minimization step: 959. Total energy = 11677.6838 kcal/mol (11668.2825 without restraints) Performing minimization step: 960. Total energy = 11670.6281 kcal/mol (11661.2297 without restraints) Performing minimization step: 961. Total energy = 11663.5831 kcal/mol (11654.1876 without restraints) Performing minimization step: 962. Total energy = 11656.5486 kcal/mol (11647.1561 without restraints) Performing minimization step: 963. Total energy = 11649.5245 kcal/mol (11640.1349 without restraints) Performing minimization step: 964. Total energy = 11642.5104 kcal/mol (11633.1237 without restraints) Performing minimization step: 965. Total energy = 11635.5064 kcal/mol (11626.1226 without restraints) Performing minimization step: 966. Total energy = 11628.5128 kcal/mol (11619.1319 without restraints) Performing minimization step: 967. Total energy = 11621.5293 kcal/mol (11612.1514 without restraints) Performing minimization step: 968. Total energy = 11614.5562 kcal/mol (11605.1813 without restraints) Performing minimization step: 969. Total energy = 11607.5931 kcal/mol (11598.2210 without restraints) Performing minimization step: 970. Total energy = 11600.6401 kcal/mol (11591.2709 without restraints) Performing minimization step: 971. Total energy = 11593.6971 kcal/mol (11584.3309 without restraints) Performing minimization step: 972. Total energy = 11586.7639 kcal/mol (11577.4005 without restraints) Performing minimization step: 973. Total energy = 11579.8404 kcal/mol (11570.4800 without restraints) Performing minimization step: 974. Total energy = 11572.9272 kcal/mol (11563.5697 without restraints) Performing minimization step: 975. Total energy = 11566.0245 kcal/mol (11556.6699 without restraints) Performing minimization step: 976. Total energy = 11559.1314 kcal/mol (11549.7797 without restraints) Performing minimization step: 977. Total energy = 11552.2484 kcal/mol (11542.8997 without restraints) Performing minimization step: 978. Total energy = 11545.3753 kcal/mol (11536.0294 without restraints) Performing minimization step: 979. Total energy = 11538.5117 kcal/mol (11529.1688 without restraints) Performing minimization step: 980. Total energy = 11531.6580 kcal/mol (11522.3180 without restraints) Performing minimization step: 981. Total energy = 11524.8148 kcal/mol (11515.4776 without restraints) Performing minimization step: 982. Total energy = 11517.9810 kcal/mol (11508.6468 without restraints) Performing minimization step: 983. Total energy = 11511.1577 kcal/mol (11501.8264 without restraints) Performing minimization step: 984. Total energy = 11504.3438 kcal/mol (11495.0153 without restraints) Performing minimization step: 985. Total energy = 11497.5393 kcal/mol (11488.2138 without restraints) Performing minimization step: 986. Total energy = 11490.7448 kcal/mol (11481.4221 without restraints) Performing minimization step: 987. Total energy = 11483.9601 kcal/mol (11474.6402 without restraints) Performing minimization step: 988. Total energy = 11477.1850 kcal/mol (11467.8681 without restraints) Performing minimization step: 989. Total energy = 11470.4196 kcal/mol (11461.1056 without restraints) Performing minimization step: 990. Total energy = 11463.6639 kcal/mol (11454.3527 without restraints) Performing minimization step: 991. Total energy = 11456.9174 kcal/mol (11447.6091 without restraints) Performing minimization step: 992. Total energy = 11450.1808 kcal/mol (11440.8754 without restraints) Performing minimization step: 993. Total energy = 11443.4540 kcal/mol (11434.1515 without restraints) Performing minimization step: 994. Total energy = 11436.7367 kcal/mol (11427.4370 without restraints) Performing minimization step: 995. Total energy = 11430.0288 kcal/mol (11420.7321 without restraints) Performing minimization step: 996. Total energy = 11423.3304 kcal/mol (11414.0365 without restraints) Performing minimization step: 997. Total energy = 11416.6416 kcal/mol (11407.3506 without restraints) Performing minimization step: 998. Total energy = 11409.9623 kcal/mol (11400.6741 without restraints) Performing minimization step: 999. Total energy = 11403.2927 kcal/mol (11394.0075 without restraints) Performing minimization step: 1000. Total energy = 11396.6327 kcal/mol (11387.3502 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 11389.9818 kcal/mol (11380.7022 without restraints) Performing minimization step: 1002. Total energy = 11383.3402 kcal/mol (11374.0634 without restraints) Performing minimization step: 1003. Total energy = 11376.7084 kcal/mol (11367.4345 without restraints) Performing minimization step: 1004. Total energy = 11370.0853 kcal/mol (11360.8142 without restraints) Performing minimization step: 1005. Total energy = 11363.4717 kcal/mol (11354.2035 without restraints) Performing minimization step: 1006. Total energy = 11356.8677 kcal/mol (11347.6024 without restraints) Performing minimization step: 1007. Total energy = 11350.2727 kcal/mol (11341.0102 without restraints) Performing minimization step: 1008. Total energy = 11343.6870 kcal/mol (11334.4273 without restraints) Performing minimization step: 1009. Total energy = 11337.1104 kcal/mol (11327.8536 without restraints) Performing minimization step: 1010. Total energy = 11330.5431 kcal/mol (11321.2893 without restraints) Performing minimization step: 1011. Total energy = 11323.9851 kcal/mol (11314.7340 without restraints) Performing minimization step: 1012. Total energy = 11317.4367 kcal/mol (11308.1884 without restraints) Performing minimization step: 1013. Total energy = 11310.8968 kcal/mol (11301.6512 without restraints) Performing minimization step: 1014. Total energy = 11304.3658 kcal/mol (11295.1232 without restraints) Performing minimization step: 1015. Total energy = 11297.8442 kcal/mol (11288.6044 without restraints) Performing minimization step: 1016. Total energy = 11291.3318 kcal/mol (11282.0948 without restraints) Performing minimization step: 1017. Total energy = 11284.8280 kcal/mol (11275.5940 without restraints) Performing minimization step: 1018. Total energy = 11278.3341 kcal/mol (11269.1028 without restraints) Performing minimization step: 1019. Total energy = 11271.8486 kcal/mol (11262.6201 without restraints) Performing minimization step: 1020. Total energy = 11265.3721 kcal/mol (11256.1465 without restraints) Performing minimization step: 1021. Total energy = 11258.9049 kcal/mol (11249.6821 without restraints) Performing minimization step: 1022. Total energy = 11252.4471 kcal/mol (11243.2271 without restraints) Performing minimization step: 1023. Total energy = 11245.9973 kcal/mol (11236.7801 without restraints) Performing minimization step: 1024. Total energy = 11239.5564 kcal/mol (11230.3419 without restraints) Performing minimization step: 1025. Total energy = 11233.1247 kcal/mol (11223.9131 without restraints) Performing minimization step: 1026. Total energy = 11226.7020 kcal/mol (11217.4935 without restraints) Performing minimization step: 1027. Total energy = 11220.2884 kcal/mol (11211.0825 without restraints) Performing minimization step: 1028. Total energy = 11213.8837 kcal/mol (11204.6806 without restraints) Performing minimization step: 1029. Total energy = 11207.4879 kcal/mol (11198.2875 without restraints) Performing minimization step: 1030. Total energy = 11201.1008 kcal/mol (11191.9032 without restraints) Performing minimization step: 1031. Total energy = 11194.7223 kcal/mol (11185.5275 without restraints) Performing minimization step: 1032. Total energy = 11188.3528 kcal/mol (11179.1608 without restraints) Performing minimization step: 1033. Total energy = 11181.9924 kcal/mol (11172.8033 without restraints) Performing minimization step: 1034. Total energy = 11175.6402 kcal/mol (11166.4539 without restraints) Performing minimization step: 1035. Total energy = 11169.2976 kcal/mol (11160.1140 without restraints) Performing minimization step: 1036. Total energy = 11162.9630 kcal/mol (11153.7822 without restraints) Performing minimization step: 1037. Total energy = 11156.6375 kcal/mol (11147.4595 without restraints) Performing minimization step: 1038. Total energy = 11150.3206 kcal/mol (11141.1456 without restraints) Performing minimization step: 1039. Total energy = 11144.0122 kcal/mol (11134.8399 without restraints) Performing minimization step: 1040. Total energy = 11137.7125 kcal/mol (11128.5430 without restraints) Performing minimization step: 1041. Total energy = 11131.4210 kcal/mol (11122.2541 without restraints) Performing minimization step: 1042. Total energy = 11125.1384 kcal/mol (11115.9745 without restraints) Performing minimization step: 1043. Total energy = 11118.8644 kcal/mol (11109.7032 without restraints) Performing minimization step: 1044. Total energy = 11112.5996 kcal/mol (11103.4412 without restraints) Performing minimization step: 1045. Total energy = 11106.3424 kcal/mol (11097.1868 without restraints) Performing minimization step: 1046. Total energy = 11100.0932 kcal/mol (11090.9403 without restraints) Performing minimization step: 1047. Total energy = 11093.8528 kcal/mol (11084.7028 without restraints) Performing minimization step: 1048. Total energy = 11087.6212 kcal/mol (11078.4740 without restraints) Performing minimization step: 1049. Total energy = 11081.3986 kcal/mol (11072.2542 without restraints) Performing minimization step: 1050. Total energy = 11075.1842 kcal/mol (11066.0425 without restraints) Performing minimization step: 1051. Total energy = 11068.9780 kcal/mol (11059.8390 without restraints) Performing minimization step: 1052. Total energy = 11062.7808 kcal/mol (11053.6448 without restraints) Performing minimization step: 1053. Total energy = 11056.5915 kcal/mol (11047.4581 without restraints) Performing minimization step: 1054. Total energy = 11050.4104 kcal/mol (11041.2798 without restraints) Performing minimization step: 1055. Total energy = 11044.2378 kcal/mol (11035.1099 without restraints) Performing minimization step: 1056. Total energy = 11038.0737 kcal/mol (11028.9486 without restraints) Performing minimization step: 1057. Total energy = 11031.9178 kcal/mol (11022.7954 without restraints) Performing minimization step: 1058. Total energy = 11025.7706 kcal/mol (11016.6510 without restraints) Performing minimization step: 1059. Total energy = 11019.6314 kcal/mol (11010.5146 without restraints) Performing minimization step: 1060. Total energy = 11013.5007 kcal/mol (11004.3866 without restraints) Performing minimization step: 1061. Total energy = 11007.3781 kcal/mol (10998.2668 without restraints) Performing minimization step: 1062. Total energy = 11001.2631 kcal/mol (10992.1545 without restraints) Performing minimization step: 1063. Total energy = 10995.1572 kcal/mol (10986.0514 without restraints) Performing minimization step: 1064. Total energy = 10989.0593 kcal/mol (10979.9562 without restraints) Performing minimization step: 1065. Total energy = 10982.9691 kcal/mol (10973.8688 without restraints) Performing minimization step: 1066. Total energy = 10976.8877 kcal/mol (10967.7901 without restraints) Performing minimization step: 1067. Total energy = 10970.8151 kcal/mol (10961.7203 without restraints) Performing minimization step: 1068. Total energy = 10964.7503 kcal/mol (10955.6582 without restraints) Performing minimization step: 1069. Total energy = 10958.6935 kcal/mol (10949.6041 without restraints) Performing minimization step: 1070. Total energy = 10952.6445 kcal/mol (10943.5579 without restraints) Performing minimization step: 1071. Total energy = 10946.6037 kcal/mol (10937.5198 without restraints) Performing minimization step: 1072. Total energy = 10940.5712 kcal/mol (10931.4900 without restraints) Performing minimization step: 1073. Total energy = 10934.5465 kcal/mol (10925.4681 without restraints) Performing minimization step: 1074. Total energy = 10928.5296 kcal/mol (10919.4540 without restraints) Performing minimization step: 1075. Total energy = 10922.5212 kcal/mol (10913.4484 without restraints) Performing minimization step: 1076. Total energy = 10916.5208 kcal/mol (10907.4506 without restraints) Performing minimization step: 1077. Total energy = 10910.5283 kcal/mol (10901.4608 without restraints) Performing minimization step: 1078. Total energy = 10904.5437 kcal/mol (10895.4790 without restraints) Performing minimization step: 1079. Total energy = 10898.5674 kcal/mol (10889.5054 without restraints) Performing minimization step: 1080. Total energy = 10892.5987 kcal/mol (10883.5395 without restraints) Performing minimization step: 1081. Total energy = 10886.6381 kcal/mol (10877.5818 without restraints) Performing minimization step: 1082. Total energy = 10880.6849 kcal/mol (10871.6311 without restraints) Performing minimization step: 1083. Total energy = 10874.7398 kcal/mol (10865.6887 without restraints) Performing minimization step: 1084. Total energy = 10868.8031 kcal/mol (10859.7546 without restraints) Performing minimization step: 1085. Total energy = 10862.8738 kcal/mol (10853.8282 without restraints) Performing minimization step: 1086. Total energy = 10856.9525 kcal/mol (10847.9096 without restraints) Performing minimization step: 1087. Total energy = 10851.0391 kcal/mol (10841.9989 without restraints) Performing minimization step: 1088. Total energy = 10845.1341 kcal/mol (10836.0965 without restraints) Performing minimization step: 1089. Total energy = 10839.2368 kcal/mol (10830.2020 without restraints) Performing minimization step: 1090. Total energy = 10833.3466 kcal/mol (10824.3145 without restraints) Performing minimization step: 1091. Total energy = 10827.4648 kcal/mol (10818.4354 without restraints) Performing minimization step: 1092. Total energy = 10821.5902 kcal/mol (10812.5634 without restraints) Performing minimization step: 1093. Total energy = 10815.7234 kcal/mol (10806.6995 without restraints) Performing minimization step: 1094. Total energy = 10809.8650 kcal/mol (10800.8440 without restraints) Performing minimization step: 1095. Total energy = 10804.0140 kcal/mol (10794.9955 without restraints) Performing minimization step: 1096. Total energy = 10798.1714 kcal/mol (10789.1556 without restraints) Performing minimization step: 1097. Total energy = 10792.3357 kcal/mol (10783.3226 without restraints) Performing minimization step: 1098. Total energy = 10786.5077 kcal/mol (10777.4975 without restraints) Performing minimization step: 1099. Total energy = 10780.6872 kcal/mol (10771.6796 without restraints) Performing minimization step: 1100. Total energy = 10774.8745 kcal/mol (10765.8695 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 10769.0691 kcal/mol (10760.0668 without restraints) Performing minimization step: 1102. Total energy = 10763.2716 kcal/mol (10754.2720 without restraints) Performing minimization step: 1103. Total energy = 10757.4817 kcal/mol (10748.4848 without restraints) Performing minimization step: 1104. Total energy = 10751.6994 kcal/mol (10742.7052 without restraints) Performing minimization step: 1105. Total energy = 10745.9246 kcal/mol (10736.9331 without restraints) Performing minimization step: 1106. Total energy = 10740.1573 kcal/mol (10731.1685 without restraints) Performing minimization step: 1107. Total energy = 10734.3978 kcal/mol (10725.4116 without restraints) Performing minimization step: 1108. Total energy = 10728.6452 kcal/mol (10719.6617 without restraints) Performing minimization step: 1109. Total energy = 10722.9001 kcal/mol (10713.9194 without restraints) Performing minimization step: 1110. Total energy = 10717.1629 kcal/mol (10708.1849 without restraints) Performing minimization step: 1111. Total energy = 10711.4330 kcal/mol (10702.4576 without restraints) Performing minimization step: 1112. Total energy = 10705.7104 kcal/mol (10696.7376 without restraints) Performing minimization step: 1113. Total energy = 10699.9958 kcal/mol (10691.0257 without restraints) Performing minimization step: 1114. Total energy = 10694.2882 kcal/mol (10685.3209 without restraints) Performing minimization step: 1115. Total energy = 10688.5884 kcal/mol (10679.6237 without restraints) Performing minimization step: 1116. Total energy = 10682.8961 kcal/mol (10673.9340 without restraints) Performing minimization step: 1117. Total energy = 10677.2111 kcal/mol (10668.2518 without restraints) Performing minimization step: 1118. Total energy = 10671.5335 kcal/mol (10662.5768 without restraints) Performing minimization step: 1119. Total energy = 10665.8632 kcal/mol (10656.9092 without restraints) Performing minimization step: 1120. Total energy = 10660.2002 kcal/mol (10651.2488 without restraints) Performing minimization step: 1121. Total energy = 10654.5449 kcal/mol (10645.5963 without restraints) Performing minimization step: 1122. Total energy = 10648.8968 kcal/mol (10639.9508 without restraints) Performing minimization step: 1123. Total energy = 10643.2559 kcal/mol (10634.3127 without restraints) Performing minimization step: 1124. Total energy = 10637.6230 kcal/mol (10628.6824 without restraints) Performing minimization step: 1125. Total energy = 10631.9966 kcal/mol (10623.0587 without restraints) Performing minimization step: 1126. Total energy = 10626.3777 kcal/mol (10617.4424 without restraints) Performing minimization step: 1127. Total energy = 10620.7661 kcal/mol (10611.8335 without restraints) Performing minimization step: 1128. Total energy = 10615.1610 kcal/mol (10606.2310 without restraints) Performing minimization step: 1129. Total energy = 10609.5638 kcal/mol (10600.6365 without restraints) Performing minimization step: 1130. Total energy = 10603.9736 kcal/mol (10595.0489 without restraints) Performing minimization step: 1131. Total energy = 10598.3904 kcal/mol (10589.4684 without restraints) Performing minimization step: 1132. Total energy = 10592.8147 kcal/mol (10583.8954 without restraints) Performing minimization step: 1133. Total energy = 10587.2461 kcal/mol (10578.3295 without restraints) Performing minimization step: 1134. Total energy = 10581.6848 kcal/mol (10572.7708 without restraints) Performing minimization step: 1135. Total energy = 10576.1308 kcal/mol (10567.2194 without restraints) Performing minimization step: 1136. Total energy = 10570.5836 kcal/mol (10561.6749 without restraints) Performing minimization step: 1137. Total energy = 10565.0436 kcal/mol (10556.1376 without restraints) Performing minimization step: 1138. Total energy = 10559.5109 kcal/mol (10550.6075 without restraints) Performing minimization step: 1139. Total energy = 10553.9849 kcal/mol (10545.0841 without restraints) Performing minimization step: 1140. Total energy = 10548.4665 kcal/mol (10539.5684 without restraints) Performing minimization step: 1141. Total energy = 10542.9548 kcal/mol (10534.0594 without restraints) Performing minimization step: 1142. Total energy = 10537.4501 kcal/mol (10528.5573 without restraints) Performing minimization step: 1143. Total energy = 10531.9527 kcal/mol (10523.0628 without restraints) Performing minimization step: 1144. Total energy = 10526.4625 kcal/mol (10517.5749 without restraints) Performing minimization step: 1145. Total energy = 10520.9789 kcal/mol (10512.0940 without restraints) Performing minimization step: 1146. Total energy = 10515.5024 kcal/mol (10506.6202 without restraints) Performing minimization step: 1147. Total energy = 10510.0328 kcal/mol (10501.1532 without restraints) Performing minimization step: 1148. Total energy = 10504.5704 kcal/mol (10495.6934 without restraints) Performing minimization step: 1149. Total energy = 10499.1146 kcal/mol (10490.2403 without restraints) Performing minimization step: 1150. Total energy = 10493.6661 kcal/mol (10484.7945 without restraints) Performing minimization step: 1151. Total energy = 10488.2246 kcal/mol (10479.3557 without restraints) Performing minimization step: 1152. Total energy = 10482.7898 kcal/mol (10473.9234 without restraints) Performing minimization step: 1153. Total energy = 10477.3619 kcal/mol (10468.4981 without restraints) Performing minimization step: 1154. Total energy = 10471.9411 kcal/mol (10463.0799 without restraints) Performing minimization step: 1155. Total energy = 10466.5271 kcal/mol (10457.6686 without restraints) Performing minimization step: 1156. Total energy = 10461.1200 kcal/mol (10452.2641 without restraints) Performing minimization step: 1157. Total energy = 10455.7201 kcal/mol (10446.8668 without restraints) Performing minimization step: 1158. Total energy = 10450.3269 kcal/mol (10441.4763 without restraints) Performing minimization step: 1159. Total energy = 10444.9406 kcal/mol (10436.0927 without restraints) Performing minimization step: 1160. Total energy = 10439.5614 kcal/mol (10430.7160 without restraints) Performing minimization step: 1161. Total energy = 10434.1887 kcal/mol (10425.3463 without restraints) Performing minimization step: 1162. Total energy = 10428.8233 kcal/mol (10419.9832 without restraints) Performing minimization step: 1163. Total energy = 10423.4639 kcal/mol (10414.6264 without restraints) Performing minimization step: 1164. Total energy = 10418.1115 kcal/mol (10409.2766 without restraints) Performing minimization step: 1165. Total energy = 10412.7664 kcal/mol (10403.9341 without restraints) Performing minimization step: 1166. Total energy = 10407.4276 kcal/mol (10398.5980 without restraints) Performing minimization step: 1167. Total energy = 10402.0955 kcal/mol (10393.2686 without restraints) Performing minimization step: 1168. Total energy = 10396.7705 kcal/mol (10387.9461 without restraints) Performing minimization step: 1169. Total energy = 10391.4519 kcal/mol (10382.6301 without restraints) Performing minimization step: 1170. Total energy = 10386.1399 kcal/mol (10377.3207 without restraints) Performing minimization step: 1171. Total energy = 10380.8346 kcal/mol (10372.0179 without restraints) Performing minimization step: 1172. Total energy = 10375.5365 kcal/mol (10366.7225 without restraints) Performing minimization step: 1173. Total energy = 10370.2449 kcal/mol (10361.4335 without restraints) Performing minimization step: 1174. Total energy = 10364.9594 kcal/mol (10356.1507 without restraints) Performing minimization step: 1175. Total energy = 10359.6812 kcal/mol (10350.8751 without restraints) Performing minimization step: 1176. Total energy = 10354.4092 kcal/mol (10345.6056 without restraints) Performing minimization step: 1177. Total energy = 10349.1439 kcal/mol (10340.3429 without restraints) Performing minimization step: 1178. Total energy = 10343.8855 kcal/mol (10335.0871 without restraints) Performing minimization step: 1179. Total energy = 10338.6333 kcal/mol (10329.8375 without restraints) Performing minimization step: 1180. Total energy = 10333.3877 kcal/mol (10324.5945 without restraints) Performing minimization step: 1181. Total energy = 10328.1486 kcal/mol (10319.3580 without restraints) Performing minimization step: 1182. Total energy = 10322.9158 kcal/mol (10314.1279 without restraints) Performing minimization step: 1183. Total energy = 10317.6896 kcal/mol (10308.9041 without restraints) Performing minimization step: 1184. Total energy = 10312.4702 kcal/mol (10303.6875 without restraints) Performing minimization step: 1185. Total energy = 10307.2577 kcal/mol (10298.4775 without restraints) Performing minimization step: 1186. Total energy = 10302.0515 kcal/mol (10293.2740 without restraints) Performing minimization step: 1187. Total energy = 10296.8515 kcal/mol (10288.0765 without restraints) Performing minimization step: 1188. Total energy = 10291.6579 kcal/mol (10282.8855 without restraints) Performing minimization step: 1189. Total energy = 10286.4712 kcal/mol (10277.7014 without restraints) Performing minimization step: 1190. Total energy = 10281.2903 kcal/mol (10272.5231 without restraints) Performing minimization step: 1191. Total energy = 10276.1162 kcal/mol (10267.3516 without restraints) Performing minimization step: 1192. Total energy = 10270.9486 kcal/mol (10262.1866 without restraints) Performing minimization step: 1193. Total energy = 10265.7875 kcal/mol (10257.0280 without restraints) Performing minimization step: 1194. Total energy = 10260.6329 kcal/mol (10251.8760 without restraints) Performing minimization step: 1195. Total energy = 10255.4851 kcal/mol (10246.7308 without restraints) Performing minimization step: 1196. Total energy = 10250.3434 kcal/mol (10241.5917 without restraints) Performing minimization step: 1197. Total energy = 10245.2084 kcal/mol (10236.4593 without restraints) Performing minimization step: 1198. Total energy = 10240.0794 kcal/mol (10231.3329 without restraints) Performing minimization step: 1199. Total energy = 10234.9569 kcal/mol (10226.2130 without restraints) Performing minimization step: 1200. Total energy = 10229.8409 kcal/mol (10221.0997 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 10224.7316 kcal/mol (10215.9928 without restraints) Performing minimization step: 1202. Total energy = 10219.6280 kcal/mol (10210.8918 without restraints) Performing minimization step: 1203. Total energy = 10214.5312 kcal/mol (10205.7976 without restraints) Performing minimization step: 1204. Total energy = 10209.4406 kcal/mol (10200.7095 without restraints) Performing minimization step: 1205. Total energy = 10204.3562 kcal/mol (10195.6275 without restraints) Performing minimization step: 1206. Total energy = 10199.2776 kcal/mol (10190.5516 without restraints) Performing minimization step: 1207. Total energy = 10194.2060 kcal/mol (10185.4826 without restraints) Performing minimization step: 1208. Total energy = 10189.1407 kcal/mol (10180.4199 without restraints) Performing minimization step: 1209. Total energy = 10184.0814 kcal/mol (10175.3631 without restraints) Performing minimization step: 1210. Total energy = 10179.0280 kcal/mol (10170.3123 without restraints) Performing minimization step: 1211. Total energy = 10173.9814 kcal/mol (10165.2683 without restraints) Performing minimization step: 1212. Total energy = 10168.9406 kcal/mol (10160.2301 without restraints) Performing minimization step: 1213. Total energy = 10163.9061 kcal/mol (10155.1981 without restraints) Performing minimization step: 1214. Total energy = 10158.8779 kcal/mol (10150.1725 without restraints) Performing minimization step: 1215. Total energy = 10153.8558 kcal/mol (10145.1529 without restraints) Performing minimization step: 1216. Total energy = 10148.8400 kcal/mol (10140.1398 without restraints) Performing minimization step: 1217. Total energy = 10143.8305 kcal/mol (10135.1327 without restraints) Performing minimization step: 1218. Total energy = 10138.8273 kcal/mol (10130.1321 without restraints) Performing minimization step: 1219. Total energy = 10133.8299 kcal/mol (10125.1373 without restraints) Performing minimization step: 1220. Total energy = 10128.8386 kcal/mol (10120.1486 without restraints) Performing minimization step: 1221. Total energy = 10123.8535 kcal/mol (10115.1660 without restraints) Performing minimization step: 1222. Total energy = 10118.8745 kcal/mol (10110.1896 without restraints) Performing minimization step: 1223. Total energy = 10113.9018 kcal/mol (10105.2194 without restraints) Performing minimization step: 1224. Total energy = 10108.9349 kcal/mol (10100.2551 without restraints) Performing minimization step: 1225. Total energy = 10103.9746 kcal/mol (10095.2974 without restraints) Performing minimization step: 1226. Total energy = 10099.0203 kcal/mol (10090.3456 without restraints) Performing minimization step: 1227. Total energy = 10094.0720 kcal/mol (10085.3999 without restraints) Performing minimization step: 1228. Total energy = 10089.1296 kcal/mol (10080.4600 without restraints) Performing minimization step: 1229. Total energy = 10084.1931 kcal/mol (10075.5260 without restraints) Performing minimization step: 1230. Total energy = 10079.2625 kcal/mol (10070.5980 without restraints) Performing minimization step: 1231. Total energy = 10074.3381 kcal/mol (10065.6762 without restraints) Performing minimization step: 1232. Total energy = 10069.4196 kcal/mol (10060.7602 without restraints) Performing minimization step: 1233. Total energy = 10064.5069 kcal/mol (10055.8498 without restraints) Performing minimization step: 1234. Total energy = 10059.6005 kcal/mol (10050.9462 without restraints) Performing minimization step: 1235. Total energy = 10054.7000 kcal/mol (10046.0482 without restraints) Performing minimization step: 1236. Total energy = 10049.8056 kcal/mol (10041.1563 without restraints) Performing minimization step: 1237. Total energy = 10044.9171 kcal/mol (10036.2702 without restraints) Performing minimization step: 1238. Total energy = 10040.0345 kcal/mol (10031.3902 without restraints) Performing minimization step: 1239. Total energy = 10035.1579 kcal/mol (10026.5162 without restraints) Performing minimization step: 1240. Total energy = 10030.2873 kcal/mol (10021.6482 without restraints) Performing minimization step: 1241. Total energy = 10025.4226 kcal/mol (10016.7860 without restraints) Performing minimization step: 1242. Total energy = 10020.5643 kcal/mol (10011.9303 without restraints) Performing minimization step: 1243. Total energy = 10015.7116 kcal/mol (10007.0802 without restraints) Performing minimization step: 1244. Total energy = 10010.8651 kcal/mol (10002.2361 without restraints) Performing minimization step: 1245. Total energy = 10006.0244 kcal/mol (9997.3979 without restraints) Performing minimization step: 1246. Total energy = 10001.1888 kcal/mol (9992.5649 without restraints) Performing minimization step: 1247. Total energy = 9996.3594 kcal/mol (9987.7380 without restraints) Performing minimization step: 1248. Total energy = 9991.5357 kcal/mol (9982.9167 without restraints) Performing minimization step: 1249. Total energy = 9986.7182 kcal/mol (9978.1018 without restraints) Performing minimization step: 1250. Total energy = 9981.9064 kcal/mol (9973.2928 without restraints) Performing minimization step: 1251. Total energy = 9977.1007 kcal/mol (9968.4894 without restraints) Performing minimization step: 1252. Total energy = 9972.3008 kcal/mol (9963.6920 without restraints) Performing minimization step: 1253. Total energy = 9967.5066 kcal/mol (9958.9004 without restraints) Performing minimization step: 1254. Total energy = 9962.7182 kcal/mol (9954.1144 without restraints) Performing minimization step: 1255. Total energy = 9957.9358 kcal/mol (9949.3348 without restraints) Performing minimization step: 1256. Total energy = 9953.1591 kcal/mol (9944.5605 without restraints) Performing minimization step: 1257. Total energy = 9948.3885 kcal/mol (9939.7925 without restraints) Performing minimization step: 1258. Total energy = 9943.6232 kcal/mol (9935.0296 without restraints) Performing minimization step: 1259. Total energy = 9938.8636 kcal/mol (9930.2725 without restraints) Performing minimization step: 1260. Total energy = 9934.1098 kcal/mol (9925.5211 without restraints) Performing minimization step: 1261. Total energy = 9929.3618 kcal/mol (9920.7757 without restraints) Performing minimization step: 1262. Total energy = 9924.6191 kcal/mol (9916.0355 without restraints) Performing minimization step: 1263. Total energy = 9919.8822 kcal/mol (9911.3012 without restraints) Performing minimization step: 1264. Total energy = 9915.1511 kcal/mol (9906.5725 without restraints) Performing minimization step: 1265. Total energy = 9910.4257 kcal/mol (9901.8496 without restraints) Performing minimization step: 1266. Total energy = 9905.7061 kcal/mol (9897.1326 without restraints) Performing minimization step: 1267. Total energy = 9900.9923 kcal/mol (9892.4214 without restraints) Performing minimization step: 1268. Total energy = 9896.2845 kcal/mol (9887.7159 without restraints) Performing minimization step: 1269. Total energy = 9891.5818 kcal/mol (9883.0157 without restraints) Performing minimization step: 1270. Total energy = 9886.8850 kcal/mol (9878.3215 without restraints) Performing minimization step: 1271. Total energy = 9882.1935 kcal/mol (9873.6325 without restraints) Performing minimization step: 1272. Total energy = 9877.5082 kcal/mol (9868.9497 without restraints) Performing minimization step: 1273. Total energy = 9872.8281 kcal/mol (9864.2721 without restraints) Performing minimization step: 1274. Total energy = 9868.1537 kcal/mol (9859.6002 without restraints) Performing minimization step: 1275. Total energy = 9863.4848 kcal/mol (9854.9337 without restraints) Performing minimization step: 1276. Total energy = 9858.8216 kcal/mol (9850.2730 without restraints) Performing minimization step: 1277. Total energy = 9854.1640 kcal/mol (9845.6180 without restraints) Performing minimization step: 1278. Total energy = 9849.5119 kcal/mol (9840.9684 without restraints) Performing minimization step: 1279. Total energy = 9844.8658 kcal/mol (9836.3248 without restraints) Performing minimization step: 1280. Total energy = 9840.2248 kcal/mol (9831.6863 without restraints) Performing minimization step: 1281. Total energy = 9835.5893 kcal/mol (9827.0533 without restraints) Performing minimization step: 1282. Total energy = 9830.9599 kcal/mol (9822.4264 without restraints) Performing minimization step: 1283. Total energy = 9826.3357 kcal/mol (9817.8048 without restraints) Performing minimization step: 1284. Total energy = 9821.7172 kcal/mol (9813.1887 without restraints) Performing minimization step: 1285. Total energy = 9817.1039 kcal/mol (9808.5779 without restraints) Performing minimization step: 1286. Total energy = 9812.4963 kcal/mol (9803.9728 without restraints) Performing minimization step: 1287. Total energy = 9807.8942 kcal/mol (9799.3731 without restraints) Performing minimization step: 1288. Total energy = 9803.2973 kcal/mol (9794.7788 without restraints) Performing minimization step: 1289. Total energy = 9798.7062 kcal/mol (9790.1901 without restraints) Performing minimization step: 1290. Total energy = 9794.1201 kcal/mol (9785.6065 without restraints) Performing minimization step: 1291. Total energy = 9789.5397 kcal/mol (9781.0285 without restraints) Performing minimization step: 1292. Total energy = 9784.9649 kcal/mol (9776.4563 without restraints) Performing minimization step: 1293. Total energy = 9780.3954 kcal/mol (9771.8892 without restraints) Performing minimization step: 1294. Total energy = 9775.8313 kcal/mol (9767.3276 without restraints) Performing minimization step: 1295. Total energy = 9771.2722 kcal/mol (9762.7710 without restraints) Performing minimization step: 1296. Total energy = 9766.7189 kcal/mol (9758.2202 without restraints) Performing minimization step: 1297. Total energy = 9762.1710 kcal/mol (9753.6748 without restraints) Performing minimization step: 1298. Total energy = 9757.6285 kcal/mol (9749.1347 without restraints) Performing minimization step: 1299. Total energy = 9753.0914 kcal/mol (9744.6001 without restraints) Performing minimization step: 1300. Total energy = 9748.5597 kcal/mol (9740.0708 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 9744.0331 kcal/mol (9735.5470 without restraints) Performing minimization step: 1302. Total energy = 9739.5123 kcal/mol (9731.0285 without restraints) Performing minimization step: 1303. Total energy = 9734.9969 kcal/mol (9726.5156 without restraints) Performing minimization step: 1304. Total energy = 9730.4869 kcal/mol (9722.0079 without restraints) Performing minimization step: 1305. Total energy = 9725.9821 kcal/mol (9717.5057 without restraints) Performing minimization step: 1306. Total energy = 9721.4825 kcal/mol (9713.0086 without restraints) Performing minimization step: 1307. Total energy = 9716.9880 kcal/mol (9708.5165 without restraints) Performing minimization step: 1308. Total energy = 9712.4986 kcal/mol (9704.0295 without restraints) Performing minimization step: 1309. Total energy = 9708.0149 kcal/mol (9699.5483 without restraints) Performing minimization step: 1310. Total energy = 9703.5360 kcal/mol (9695.0718 without restraints) Performing minimization step: 1311. Total energy = 9699.0626 kcal/mol (9690.6010 without restraints) Performing minimization step: 1312. Total energy = 9694.5948 kcal/mol (9686.1356 without restraints) Performing minimization step: 1313. Total energy = 9690.1323 kcal/mol (9681.6756 without restraints) Performing minimization step: 1314. Total energy = 9685.6749 kcal/mol (9677.2206 without restraints) Performing minimization step: 1315. Total energy = 9681.2229 kcal/mol (9672.7711 without restraints) Performing minimization step: 1316. Total energy = 9676.7764 kcal/mol (9668.3271 without restraints) Performing minimization step: 1317. Total energy = 9672.3353 kcal/mol (9663.8886 without restraints) Performing minimization step: 1318. Total energy = 9667.8991 kcal/mol (9659.4547 without restraints) Performing minimization step: 1319. Total energy = 9663.4680 kcal/mol (9655.0260 without restraints) Performing minimization step: 1320. Total energy = 9659.0422 kcal/mol (9650.6026 without restraints) Performing minimization step: 1321. Total energy = 9654.6215 kcal/mol (9646.1845 without restraints) Performing minimization step: 1322. Total energy = 9650.2058 kcal/mol (9641.7712 without restraints) Performing minimization step: 1323. Total energy = 9645.7953 kcal/mol (9637.3632 without restraints) Performing minimization step: 1324. Total energy = 9641.3904 kcal/mol (9632.9609 without restraints) Performing minimization step: 1325. Total energy = 9636.9907 kcal/mol (9628.5635 without restraints) Performing minimization step: 1326. Total energy = 9632.5959 kcal/mol (9624.1711 without restraints) Performing minimization step: 1327. Total energy = 9628.2062 kcal/mol (9619.7838 without restraints) Performing minimization step: 1328. Total energy = 9623.8211 kcal/mol (9615.4013 without restraints) Performing minimization step: 1329. Total energy = 9619.4420 kcal/mol (9611.0247 without restraints) Performing minimization step: 1330. Total energy = 9615.0684 kcal/mol (9606.6536 without restraints) Performing minimization step: 1331. Total energy = 9610.6994 kcal/mol (9602.2869 without restraints) Performing minimization step: 1332. Total energy = 9606.3353 kcal/mol (9597.9252 without restraints) Performing minimization step: 1333. Total energy = 9601.9763 kcal/mol (9593.5686 without restraints) Performing minimization step: 1334. Total energy = 9597.6223 kcal/mol (9589.2171 without restraints) Performing minimization step: 1335. Total energy = 9593.2733 kcal/mol (9584.8705 without restraints) Performing minimization step: 1336. Total energy = 9588.9298 kcal/mol (9580.5294 without restraints) Performing minimization step: 1337. Total energy = 9584.5918 kcal/mol (9576.1940 without restraints) Performing minimization step: 1338. Total energy = 9580.2581 kcal/mol (9571.8627 without restraints) Performing minimization step: 1339. Total energy = 9575.9299 kcal/mol (9567.5369 without restraints) Performing minimization step: 1340. Total energy = 9571.6064 kcal/mol (9563.2159 without restraints) Performing minimization step: 1341. Total energy = 9567.2881 kcal/mol (9558.9000 without restraints) Performing minimization step: 1342. Total energy = 9562.9746 kcal/mol (9554.5889 without restraints) Performing minimization step: 1343. Total energy = 9558.6663 kcal/mol (9550.2830 without restraints) Performing minimization step: 1344. Total energy = 9554.3624 kcal/mol (9545.9815 without restraints) Performing minimization step: 1345. Total energy = 9550.0639 kcal/mol (9541.6855 without restraints) Performing minimization step: 1346. Total energy = 9545.7707 kcal/mol (9537.3948 without restraints) Performing minimization step: 1347. Total energy = 9541.4824 kcal/mol (9533.1089 without restraints) Performing minimization step: 1348. Total energy = 9537.1990 kcal/mol (9528.8279 without restraints) Performing minimization step: 1349. Total energy = 9532.9203 kcal/mol (9524.5516 without restraints) Performing minimization step: 1350. Total energy = 9528.6468 kcal/mol (9520.2805 without restraints) Performing minimization step: 1351. Total energy = 9524.3782 kcal/mol (9516.0143 without restraints) Performing minimization step: 1352. Total energy = 9520.1146 kcal/mol (9511.7533 without restraints) Performing minimization step: 1353. Total energy = 9515.8560 kcal/mol (9507.4970 without restraints) Performing minimization step: 1354. Total energy = 9511.6021 kcal/mol (9503.2456 without restraints) Performing minimization step: 1355. Total energy = 9507.3533 kcal/mol (9498.9992 without restraints) Performing minimization step: 1356. Total energy = 9503.1094 kcal/mol (9494.7577 without restraints) Performing minimization step: 1357. Total energy = 9498.8706 kcal/mol (9490.5213 without restraints) Performing minimization step: 1358. Total energy = 9494.6365 kcal/mol (9486.2895 without restraints) Performing minimization step: 1359. Total energy = 9490.4067 kcal/mol (9482.0623 without restraints) Performing minimization step: 1360. Total energy = 9486.1825 kcal/mol (9477.8405 without restraints) Performing minimization step: 1361. Total energy = 9481.9631 kcal/mol (9473.6235 without restraints) Performing minimization step: 1362. Total energy = 9477.7487 kcal/mol (9469.4115 without restraints) Performing minimization step: 1363. Total energy = 9473.5384 kcal/mol (9465.2037 without restraints) Performing minimization step: 1364. Total energy = 9469.3336 kcal/mol (9461.0012 without restraints) Performing minimization step: 1365. Total energy = 9465.1336 kcal/mol (9456.8036 without restraints) Performing minimization step: 1366. Total energy = 9460.9384 kcal/mol (9452.6108 without restraints) Performing minimization step: 1367. Total energy = 9456.7482 kcal/mol (9448.4231 without restraints) Performing minimization step: 1368. Total energy = 9452.5627 kcal/mol (9444.2400 without restraints) Performing minimization step: 1369. Total energy = 9448.3818 kcal/mol (9440.0615 without restraints) Performing minimization step: 1370. Total energy = 9444.2057 kcal/mol (9435.8879 without restraints) Performing minimization step: 1371. Total energy = 9440.0345 kcal/mol (9431.7189 without restraints) Performing minimization step: 1372. Total energy = 9435.8681 kcal/mol (9427.5550 without restraints) Performing minimization step: 1373. Total energy = 9431.7063 kcal/mol (9423.3957 without restraints) Performing minimization step: 1374. Total energy = 9427.5501 kcal/mol (9419.2417 without restraints) Performing minimization step: 1375. Total energy = 9423.3979 kcal/mol (9415.0920 without restraints) Performing minimization step: 1376. Total energy = 9419.2506 kcal/mol (9410.9471 without restraints) Performing minimization step: 1377. Total energy = 9415.1086 kcal/mol (9406.8074 without restraints) Performing minimization step: 1378. Total energy = 9410.9709 kcal/mol (9402.6723 without restraints) Performing minimization step: 1379. Total energy = 9406.8379 kcal/mol (9398.5418 without restraints) Performing minimization step: 1380. Total energy = 9402.7099 kcal/mol (9394.4160 without restraints) Performing minimization step: 1381. Total energy = 9398.5863 kcal/mol (9390.2948 without restraints) Performing minimization step: 1382. Total energy = 9394.4676 kcal/mol (9386.1786 without restraints) Performing minimization step: 1383. Total energy = 9390.3536 kcal/mol (9382.0670 without restraints) Performing minimization step: 1384. Total energy = 9386.2445 kcal/mol (9377.9603 without restraints) Performing minimization step: 1385. Total energy = 9382.1402 kcal/mol (9373.8584 without restraints) Performing minimization step: 1386. Total energy = 9378.0403 kcal/mol (9369.7607 without restraints) Performing minimization step: 1387. Total energy = 9373.9448 kcal/mol (9365.6677 without restraints) Performing minimization step: 1388. Total energy = 9369.8538 kcal/mol (9361.5791 without restraints) Performing minimization step: 1389. Total energy = 9365.7679 kcal/mol (9357.4956 without restraints) Performing minimization step: 1390. Total energy = 9361.6863 kcal/mol (9353.4163 without restraints) Performing minimization step: 1391. Total energy = 9357.6098 kcal/mol (9349.3422 without restraints) Performing minimization step: 1392. Total energy = 9353.5378 kcal/mol (9345.2726 without restraints) Performing minimization step: 1393. Total energy = 9349.4702 kcal/mol (9341.2074 without restraints) Performing minimization step: 1394. Total energy = 9345.4074 kcal/mol (9337.1471 without restraints) Performing minimization step: 1395. Total energy = 9341.3492 kcal/mol (9333.0912 without restraints) Performing minimization step: 1396. Total energy = 9337.2953 kcal/mol (9329.0397 without restraints) Performing minimization step: 1397. Total energy = 9333.2459 kcal/mol (9324.9926 without restraints) Performing minimization step: 1398. Total energy = 9329.2014 kcal/mol (9320.9505 without restraints) Performing minimization step: 1399. Total energy = 9325.1615 kcal/mol (9316.9130 without restraints) Performing minimization step: 1400. Total energy = 9321.1261 kcal/mol (9312.8801 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 9317.0953 kcal/mol (9308.8514 without restraints) Performing minimization step: 1402. Total energy = 9313.0687 kcal/mol (9304.8274 without restraints) Performing minimization step: 1403. Total energy = 9309.0470 kcal/mol (9300.8081 without restraints) Performing minimization step: 1404. Total energy = 9305.0306 kcal/mol (9296.7940 without restraints) Performing minimization step: 1405. Total energy = 9301.0183 kcal/mol (9292.7839 without restraints) Performing minimization step: 1406. Total energy = 9297.0099 kcal/mol (9288.7781 without restraints) Performing minimization step: 1407. Total energy = 9293.0071 kcal/mol (9284.7778 without restraints) Performing minimization step: 1408. Total energy = 9289.0085 kcal/mol (9280.7816 without restraints) Performing minimization step: 1409. Total energy = 9285.0142 kcal/mol (9276.7895 without restraints) Performing minimization step: 1410. Total energy = 9281.0248 kcal/mol (9272.8025 without restraints) Performing minimization step: 1411. Total energy = 9277.0390 kcal/mol (9268.8189 without restraints) Performing minimization step: 1412. Total energy = 9273.0579 kcal/mol (9264.8403 without restraints) Performing minimization step: 1413. Total energy = 9269.0814 kcal/mol (9260.8662 without restraints) Performing minimization step: 1414. Total energy = 9265.1094 kcal/mol (9256.8965 without restraints) Performing minimization step: 1415. Total energy = 9261.1418 kcal/mol (9252.9311 without restraints) Performing minimization step: 1416. Total energy = 9257.1787 kcal/mol (9248.9706 without restraints) Performing minimization step: 1417. Total energy = 9253.2195 kcal/mol (9245.0137 without restraints) Performing minimization step: 1418. Total energy = 9249.2652 kcal/mol (9241.0617 without restraints) Performing minimization step: 1419. Total energy = 9245.3151 kcal/mol (9237.1140 without restraints) Performing minimization step: 1420. Total energy = 9241.3696 kcal/mol (9233.1710 without restraints) Performing minimization step: 1421. Total energy = 9237.4286 kcal/mol (9229.2322 without restraints) Performing minimization step: 1422. Total energy = 9233.4926 kcal/mol (9225.2986 without restraints) Performing minimization step: 1423. Total energy = 9229.5610 kcal/mol (9221.3697 without restraints) Performing minimization step: 1424. Total energy = 9225.6338 kcal/mol (9217.4445 without restraints) Performing minimization step: 1425. Total energy = 9221.7103 kcal/mol (9213.5233 without restraints) Performing minimization step: 1426. Total energy = 9217.7913 kcal/mol (9209.6067 without restraints) Performing minimization step: 1427. Total energy = 9213.8763 kcal/mol (9205.6941 without restraints) Performing minimization step: 1428. Total energy = 9209.9657 kcal/mol (9201.7858 without restraints) Performing minimization step: 1429. Total energy = 9206.0599 kcal/mol (9197.8823 without restraints) Performing minimization step: 1430. Total energy = 9202.1580 kcal/mol (9193.9828 without restraints) Performing minimization step: 1431. Total energy = 9198.2607 kcal/mol (9190.0878 without restraints) Performing minimization step: 1432. Total energy = 9194.3682 kcal/mol (9186.1977 without restraints) Performing minimization step: 1433. Total energy = 9190.4797 kcal/mol (9182.3116 without restraints) Performing minimization step: 1434. Total energy = 9186.5958 kcal/mol (9178.4302 without restraints) Performing minimization step: 1435. Total energy = 9182.7163 kcal/mol (9174.5529 without restraints) Performing minimization step: 1436. Total energy = 9178.8410 kcal/mol (9170.6799 without restraints) Performing minimization step: 1437. Total energy = 9174.9697 kcal/mol (9166.8109 without restraints) Performing minimization step: 1438. Total energy = 9171.1025 kcal/mol (9162.9460 without restraints) Performing minimization step: 1439. Total energy = 9167.2398 kcal/mol (9159.0856 without restraints) Performing minimization step: 1440. Total energy = 9163.3814 kcal/mol (9155.2296 without restraints) Performing minimization step: 1441. Total energy = 9159.5274 kcal/mol (9151.3780 without restraints) Performing minimization step: 1442. Total energy = 9155.6775 kcal/mol (9147.5304 without restraints) Performing minimization step: 1443. Total energy = 9151.8322 kcal/mol (9143.6874 without restraints) Performing minimization step: 1444. Total energy = 9147.9903 kcal/mol (9139.8478 without restraints) Performing minimization step: 1445. Total energy = 9144.1532 kcal/mol (9136.0131 without restraints) Performing minimization step: 1446. Total energy = 9140.3204 kcal/mol (9132.1826 without restraints) Performing minimization step: 1447. Total energy = 9136.4921 kcal/mol (9128.3567 without restraints) Performing minimization step: 1448. Total energy = 9132.6683 kcal/mol (9124.5353 without restraints) Performing minimization step: 1449. Total energy = 9128.8477 kcal/mol (9120.7170 without restraints) Performing minimization step: 1450. Total energy = 9125.0319 kcal/mol (9116.9037 without restraints) Performing minimization step: 1451. Total energy = 9121.2204 kcal/mol (9113.0944 without restraints) Performing minimization step: 1452. Total energy = 9117.4126 kcal/mol (9109.2888 without restraints) Performing minimization step: 1453. Total energy = 9113.6079 kcal/mol (9105.4865 without restraints) Performing minimization step: 1454. Total energy = 9109.8087 kcal/mol (9101.6897 without restraints) Performing minimization step: 1455. Total energy = 9106.0137 kcal/mol (9097.8971 without restraints) Performing minimization step: 1456. Total energy = 9102.2230 kcal/mol (9094.1086 without restraints) Performing minimization step: 1457. Total energy = 9098.4363 kcal/mol (9090.3242 without restraints) Performing minimization step: 1458. Total energy = 9094.6547 kcal/mol (9086.5449 without restraints) Performing minimization step: 1459. Total energy = 9090.8763 kcal/mol (9082.7688 without restraints) Performing minimization step: 1460. Total energy = 9087.1019 kcal/mol (9078.9968 without restraints) Performing minimization step: 1461. Total energy = 9083.3319 kcal/mol (9075.2290 without restraints) Performing minimization step: 1462. Total energy = 9079.5655 kcal/mol (9071.4650 without restraints) Performing minimization step: 1463. Total energy = 9075.8041 kcal/mol (9067.7060 without restraints) Performing minimization step: 1464. Total energy = 9072.0465 kcal/mol (9063.9506 without restraints) Performing minimization step: 1465. Total energy = 9068.2925 kcal/mol (9060.1988 without restraints) Performing minimization step: 1466. Total energy = 9064.5428 kcal/mol (9056.4515 without restraints) Performing minimization step: 1467. Total energy = 9060.7977 kcal/mol (9052.7088 without restraints) Performing minimization step: 1468. Total energy = 9057.0562 kcal/mol (9048.9695 without restraints) Performing minimization step: 1469. Total energy = 9053.3190 kcal/mol (9045.2347 without restraints) Performing minimization step: 1470. Total energy = 9049.5860 kcal/mol (9041.5040 without restraints) Performing minimization step: 1471. Total energy = 9045.8569 kcal/mol (9037.7772 without restraints) Performing minimization step: 1472. Total energy = 9042.1314 kcal/mol (9034.0540 without restraints) Performing minimization step: 1473. Total energy = 9038.4104 kcal/mol (9030.3353 without restraints) Performing minimization step: 1474. Total energy = 9034.6929 kcal/mol (9026.6201 without restraints) Performing minimization step: 1475. Total energy = 9030.9799 kcal/mol (9022.9094 without restraints) Performing minimization step: 1476. Total energy = 9027.2707 kcal/mol (9019.2025 without restraints) Performing minimization step: 1477. Total energy = 9023.5661 kcal/mol (9015.5002 without restraints) Performing minimization step: 1478. Total energy = 9019.8649 kcal/mol (9011.8013 without restraints) Performing minimization step: 1479. Total energy = 9016.1680 kcal/mol (9008.1066 without restraints) Performing minimization step: 1480. Total energy = 9012.4752 kcal/mol (9004.4162 without restraints) Performing minimization step: 1481. Total energy = 9008.7863 kcal/mol (9000.7296 without restraints) Performing minimization step: 1482. Total energy = 9005.1014 kcal/mol (8997.0470 without restraints) Performing minimization step: 1483. Total energy = 9001.4203 kcal/mol (8993.3682 without restraints) Performing minimization step: 1484. Total energy = 8997.7430 kcal/mol (8989.6932 without restraints) Performing minimization step: 1485. Total energy = 8994.0698 kcal/mol (8986.0223 without restraints) Performing minimization step: 1486. Total energy = 8990.4003 kcal/mol (8982.3551 without restraints) Performing minimization step: 1487. Total energy = 8986.7350 kcal/mol (8978.6922 without restraints) Performing minimization step: 1488. Total energy = 8983.0737 kcal/mol (8975.0330 without restraints) Performing minimization step: 1489. Total energy = 8979.4163 kcal/mol (8971.3780 without restraints) Performing minimization step: 1490. Total energy = 8975.7628 kcal/mol (8967.7267 without restraints) Performing minimization step: 1491. Total energy = 8972.1133 kcal/mol (8964.0795 without restraints) Performing minimization step: 1492. Total energy = 8968.4678 kcal/mol (8960.4363 without restraints) Performing minimization step: 1493. Total energy = 8964.8264 kcal/mol (8956.7972 without restraints) Performing minimization step: 1494. Total energy = 8961.1886 kcal/mol (8953.1616 without restraints) Performing minimization step: 1495. Total energy = 8957.5549 kcal/mol (8949.5305 without restraints) Performing minimization step: 1496. Total energy = 8953.9251 kcal/mol (8945.9027 without restraints) Performing minimization step: 1497. Total energy = 8950.2991 kcal/mol (8942.2790 without restraints) Performing minimization step: 1498. Total energy = 8946.6767 kcal/mol (8938.6589 without restraints) Performing minimization step: 1499. Total energy = 8943.0579 kcal/mol (8935.0423 without restraints) Performing minimization step: 1500. Total energy = 8939.4437 kcal/mol (8931.4304 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 8935.8327 kcal/mol (8927.8217 without restraints) Performing minimization step: 1502. Total energy = 8932.2261 kcal/mol (8924.2173 without restraints) Performing minimization step: 1503. Total energy = 8928.6233 kcal/mol (8920.6169 without restraints) Performing minimization step: 1504. Total energy = 8925.0242 kcal/mol (8917.0201 without restraints) Performing minimization step: 1505. Total energy = 8921.4289 kcal/mol (8913.4270 without restraints) Performing minimization step: 1506. Total energy = 8917.8373 kcal/mol (8909.8376 without restraints) Performing minimization step: 1507. Total energy = 8914.2491 kcal/mol (8906.2517 without restraints) Performing minimization step: 1508. Total energy = 8910.6651 kcal/mol (8902.6700 without restraints) Performing minimization step: 1509. Total energy = 8907.0853 kcal/mol (8899.0924 without restraints) Performing minimization step: 1510. Total energy = 8903.5080 kcal/mol (8895.5173 without restraints) Performing minimization step: 1511. Total energy = 8899.9350 kcal/mol (8891.9467 without restraints) Performing minimization step: 1512. Total energy = 8896.3661 kcal/mol (8888.3801 without restraints) Performing minimization step: 1513. Total energy = 8892.8012 kcal/mol (8884.8174 without restraints) Performing minimization step: 1514. Total energy = 8889.2398 kcal/mol (8881.2583 without restraints) Performing minimization step: 1515. Total energy = 8885.6822 kcal/mol (8877.7029 without restraints) Performing minimization step: 1516. Total energy = 8882.1285 kcal/mol (8874.1515 without restraints) Performing minimization step: 1517. Total energy = 8878.5781 kcal/mol (8870.6034 without restraints) Performing minimization step: 1518. Total energy = 8875.0319 kcal/mol (8867.0594 without restraints) Performing minimization step: 1519. Total energy = 8871.4890 kcal/mol (8863.5188 without restraints) Performing minimization step: 1520. Total energy = 8867.9500 kcal/mol (8859.9820 without restraints) Performing minimization step: 1521. Total energy = 8864.4148 kcal/mol (8856.4490 without restraints) Performing minimization step: 1522. Total energy = 8860.8834 kcal/mol (8852.9201 without restraints) Performing minimization step: 1523. Total energy = 8857.3557 kcal/mol (8849.3945 without restraints) Performing minimization step: 1524. Total energy = 8853.8314 kcal/mol (8845.8724 without restraints) Performing minimization step: 1525. Total energy = 8850.3109 kcal/mol (8842.3541 without restraints) Performing minimization step: 1526. Total energy = 8846.7943 kcal/mol (8838.8402 without restraints) Performing minimization step: 1527. Total energy = 8843.2814 kcal/mol (8835.3292 without restraints) Performing minimization step: 1528. Total energy = 8839.7718 kcal/mol (8831.8218 without restraints) Performing minimization step: 1529. Total energy = 8836.2659 kcal/mol (8828.3181 without restraints) Performing minimization step: 1530. Total energy = 8832.7636 kcal/mol (8824.8181 without restraints) Performing minimization step: 1531. Total energy = 8829.2651 kcal/mol (8821.3219 without restraints) Performing minimization step: 1532. Total energy = 8825.7696 kcal/mol (8817.8285 without restraints) Performing minimization step: 1533. Total energy = 8822.2785 kcal/mol (8814.3397 without restraints) Performing minimization step: 1534. Total energy = 8818.7911 kcal/mol (8810.8545 without restraints) Performing minimization step: 1535. Total energy = 8815.3068 kcal/mol (8807.3725 without restraints) Performing minimization step: 1536. Total energy = 8811.8264 kcal/mol (8803.8943 without restraints) Performing minimization step: 1537. Total energy = 8808.3495 kcal/mol (8800.4197 without restraints) Performing minimization step: 1538. Total energy = 8804.8762 kcal/mol (8796.9486 without restraints) Performing minimization step: 1539. Total energy = 8801.4064 kcal/mol (8793.4812 without restraints) Performing minimization step: 1540. Total energy = 8797.9401 kcal/mol (8790.0170 without restraints) Performing minimization step: 1541. Total energy = 8794.4774 kcal/mol (8786.5565 without restraints) Performing minimization step: 1542. Total energy = 8791.0184 kcal/mol (8783.0997 without restraints) Performing minimization step: 1543. Total energy = 8787.5624 kcal/mol (8779.6459 without restraints) Performing minimization step: 1544. Total energy = 8784.1100 kcal/mol (8776.1958 without restraints) Performing minimization step: 1545. Total energy = 8780.6621 kcal/mol (8772.7501 without restraints) Performing minimization step: 1546. Total energy = 8777.2169 kcal/mol (8769.3071 without restraints) Performing minimization step: 1547. Total energy = 8773.7750 kcal/mol (8765.8674 without restraints) Performing minimization step: 1548. Total energy = 8770.3370 kcal/mol (8762.4316 without restraints) Performing minimization step: 1549. Total energy = 8766.9029 kcal/mol (8758.9999 without restraints) Performing minimization step: 1550. Total energy = 8763.4725 kcal/mol (8755.5717 without restraints) Performing minimization step: 1551. Total energy = 8760.0453 kcal/mol (8752.1467 without restraints) Performing minimization step: 1552. Total energy = 8756.6211 kcal/mol (8748.7247 without restraints) Performing minimization step: 1553. Total energy = 8753.2013 kcal/mol (8745.3069 without restraints) Performing minimization step: 1554. Total energy = 8749.7843 kcal/mol (8741.8923 without restraints) Performing minimization step: 1555. Total energy = 8746.3708 kcal/mol (8738.4809 without restraints) Performing minimization step: 1556. Total energy = 8742.9605 kcal/mol (8735.0731 without restraints) Performing minimization step: 1557. Total energy = 8739.5541 kcal/mol (8731.6687 without restraints) Performing minimization step: 1558. Total energy = 8736.1510 kcal/mol (8728.2678 without restraints) Performing minimization step: 1559. Total energy = 8732.7512 kcal/mol (8724.8702 without restraints) Performing minimization step: 1560. Total energy = 8729.3554 kcal/mol (8721.4770 without restraints) Performing minimization step: 1561. Total energy = 8725.9630 kcal/mol (8718.0865 without restraints) Performing minimization step: 1562. Total energy = 8722.5738 kcal/mol (8714.6994 without restraints) Performing minimization step: 1563. Total energy = 8719.1877 kcal/mol (8711.3155 without restraints) Performing minimization step: 1564. Total energy = 8715.8049 kcal/mol (8707.9350 without restraints) Performing minimization step: 1565. Total energy = 8712.4258 kcal/mol (8704.5582 without restraints) Performing minimization step: 1566. Total energy = 8709.0498 kcal/mol (8701.1843 without restraints) Performing minimization step: 1567. Total energy = 8705.6775 kcal/mol (8697.8143 without restraints) Performing minimization step: 1568. Total energy = 8702.3089 kcal/mol (8694.4478 without restraints) Performing minimization step: 1569. Total energy = 8698.9430 kcal/mol (8691.0841 without restraints) Performing minimization step: 1570. Total energy = 8695.5807 kcal/mol (8687.7239 without restraints) Performing minimization step: 1571. Total energy = 8692.2217 kcal/mol (8684.3671 without restraints) Performing minimization step: 1572. Total energy = 8688.8661 kcal/mol (8681.0137 without restraints) Performing minimization step: 1573. Total energy = 8685.5139 kcal/mol (8677.6638 without restraints) Performing minimization step: 1574. Total energy = 8682.1650 kcal/mol (8674.3170 without restraints) Performing minimization step: 1575. Total energy = 8678.8197 kcal/mol (8670.9740 without restraints) Performing minimization step: 1576. Total energy = 8675.4772 kcal/mol (8667.6335 without restraints) Performing minimization step: 1577. Total energy = 8672.1383 kcal/mol (8664.2971 without restraints) Performing minimization step: 1578. Total energy = 8668.8029 kcal/mol (8660.9635 without restraints) Performing minimization step: 1579. Total energy = 8665.4704 kcal/mol (8657.6333 without restraints) Performing minimization step: 1580. Total energy = 8662.1414 kcal/mol (8654.3066 without restraints) Performing minimization step: 1581. Total energy = 8658.8156 kcal/mol (8650.9829 without restraints) Performing minimization step: 1582. Total energy = 8655.4932 kcal/mol (8647.6627 without restraints) Performing minimization step: 1583. Total energy = 8652.1740 kcal/mol (8644.3456 without restraints) Performing minimization step: 1584. Total energy = 8648.8579 kcal/mol (8641.0316 without restraints) Performing minimization step: 1585. Total energy = 8645.5448 kcal/mol (8637.7206 without restraints) Performing minimization step: 1586. Total energy = 8642.2353 kcal/mol (8634.4136 without restraints) Performing minimization step: 1587. Total energy = 8638.9289 kcal/mol (8631.1093 without restraints) Performing minimization step: 1588. Total energy = 8635.6259 kcal/mol (8627.8085 without restraints) Performing minimization step: 1589. Total energy = 8632.3261 kcal/mol (8624.5108 without restraints) Performing minimization step: 1590. Total energy = 8629.0300 kcal/mol (8621.2168 without restraints) Performing minimization step: 1591. Total energy = 8625.7366 kcal/mol (8617.9256 without restraints) Performing minimization step: 1592. Total energy = 8622.4464 kcal/mol (8614.6376 without restraints) Performing minimization step: 1593. Total energy = 8619.1599 kcal/mol (8611.3533 without restraints) Performing minimization step: 1594. Total energy = 8615.8762 kcal/mol (8608.0717 without restraints) Performing minimization step: 1595. Total energy = 8612.5956 kcal/mol (8604.7933 without restraints) Performing minimization step: 1596. Total energy = 8609.3180 kcal/mol (8601.5179 without restraints) Performing minimization step: 1597. Total energy = 8606.0439 kcal/mol (8598.2460 without restraints) Performing minimization step: 1598. Total energy = 8602.7732 kcal/mol (8594.9774 without restraints) Performing minimization step: 1599. Total energy = 8599.5055 kcal/mol (8591.7119 without restraints) Performing minimization step: 1600. Total energy = 8596.2411 kcal/mol (8588.4496 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 8592.9797 kcal/mol (8585.1904 without restraints) Performing minimization step: 1602. Total energy = 8589.7213 kcal/mol (8581.9342 without restraints) Performing minimization step: 1603. Total energy = 8586.4668 kcal/mol (8578.6819 without restraints) Performing minimization step: 1604. Total energy = 8583.2145 kcal/mol (8575.4317 without restraints) Performing minimization step: 1605. Total energy = 8579.9655 kcal/mol (8572.1849 without restraints) Performing minimization step: 1606. Total energy = 8576.7199 kcal/mol (8568.9415 without restraints) Performing minimization step: 1607. Total energy = 8573.4772 kcal/mol (8565.7008 without restraints) Performing minimization step: 1608. Total energy = 8570.2375 kcal/mol (8562.4633 without restraints) Performing minimization step: 1609. Total energy = 8567.0007 kcal/mol (8559.2287 without restraints) Performing minimization step: 1610. Total energy = 8563.7676 kcal/mol (8555.9976 without restraints) Performing minimization step: 1611. Total energy = 8560.5371 kcal/mol (8552.7693 without restraints) Performing minimization step: 1612. Total energy = 8557.3097 kcal/mol (8549.5441 without restraints) Performing minimization step: 1613. Total energy = 8554.0856 kcal/mol (8546.3221 without restraints) Performing minimization step: 1614. Total energy = 8550.8641 kcal/mol (8543.1027 without restraints) Performing minimization step: 1615. Total energy = 8547.6460 kcal/mol (8539.8868 without restraints) Performing minimization step: 1616. Total energy = 8544.4310 kcal/mol (8536.6739 without restraints) Performing minimization step: 1617. Total energy = 8541.2196 kcal/mol (8533.4647 without restraints) Performing minimization step: 1618. Total energy = 8538.0106 kcal/mol (8530.2578 without restraints) Performing minimization step: 1619. Total energy = 8534.8046 kcal/mol (8527.0539 without restraints) Performing minimization step: 1620. Total energy = 8531.6014 kcal/mol (8523.8529 without restraints) Performing minimization step: 1621. Total energy = 8528.4016 kcal/mol (8520.6553 without restraints) Performing minimization step: 1622. Total energy = 8525.2051 kcal/mol (8517.4609 without restraints) Performing minimization step: 1623. Total energy = 8522.0112 kcal/mol (8514.2690 without restraints) Performing minimization step: 1624. Total energy = 8518.8202 kcal/mol (8511.0802 without restraints) Performing minimization step: 1625. Total energy = 8515.6322 kcal/mol (8507.8943 without restraints) Performing minimization step: 1626. Total energy = 8512.4473 kcal/mol (8504.7117 without restraints) Performing minimization step: 1627. Total energy = 8509.2658 kcal/mol (8501.5323 without restraints) Performing minimization step: 1628. Total energy = 8506.0870 kcal/mol (8498.3554 without restraints) Performing minimization step: 1629. Total energy = 8502.9108 kcal/mol (8495.1814 without restraints) Performing minimization step: 1630. Total energy = 8499.7379 kcal/mol (8492.0106 without restraints) Performing minimization step: 1631. Total energy = 8496.5679 kcal/mol (8488.8428 without restraints) Performing minimization step: 1632. Total energy = 8493.4007 kcal/mol (8485.6778 without restraints) Performing minimization step: 1633. Total energy = 8490.2365 kcal/mol (8482.5156 without restraints) Performing minimization step: 1634. Total energy = 8487.0755 kcal/mol (8479.3567 without restraints) Performing minimization step: 1635. Total energy = 8483.9172 kcal/mol (8476.2005 without restraints) Performing minimization step: 1636. Total energy = 8480.7619 kcal/mol (8473.0475 without restraints) Performing minimization step: 1637. Total energy = 8477.6094 kcal/mol (8469.8969 without restraints) Performing minimization step: 1638. Total energy = 8474.4590 kcal/mol (8466.7487 without restraints) Performing minimization step: 1639. Total energy = 8471.3121 kcal/mol (8463.6039 without restraints) Performing minimization step: 1640. Total energy = 8468.1684 kcal/mol (8460.4623 without restraints) Performing minimization step: 1641. Total energy = 8465.0276 kcal/mol (8457.3236 without restraints) Performing minimization step: 1642. Total energy = 8461.8894 kcal/mol (8454.1875 without restraints) Performing minimization step: 1643. Total energy = 8458.7541 kcal/mol (8451.0543 without restraints) Performing minimization step: 1644. Total energy = 8455.6214 kcal/mol (8447.9236 without restraints) Performing minimization step: 1645. Total energy = 8452.4911 kcal/mol (8444.7955 without restraints) Performing minimization step: 1646. Total energy = 8449.3641 kcal/mol (8441.6707 without restraints) Performing minimization step: 1647. Total energy = 8446.2403 kcal/mol (8438.5489 without restraints) Performing minimization step: 1648. Total energy = 8443.1192 kcal/mol (8435.4300 without restraints) Performing minimization step: 1649. Total energy = 8440.0016 kcal/mol (8432.3145 without restraints) Performing minimization step: 1650. Total energy = 8436.8865 kcal/mol (8429.2015 without restraints) Performing minimization step: 1651. Total energy = 8433.7749 kcal/mol (8426.0920 without restraints) Performing minimization step: 1652. Total energy = 8430.6650 kcal/mol (8422.9839 without restraints) Performing minimization step: 1653. Total energy = 8427.5582 kcal/mol (8419.8795 without restraints) Performing minimization step: 1654. Total energy = 8424.4543 kcal/mol (8416.7776 without restraints) Performing minimization step: 1655. Total energy = 8421.3531 kcal/mol (8413.6785 without restraints) Performing minimization step: 1656. Total energy = 8418.2547 kcal/mol (8410.5821 without restraints) Performing minimization step: 1657. Total energy = 8415.1592 kcal/mol (8407.4888 without restraints) Performing minimization step: 1658. Total energy = 8412.0662 kcal/mol (8404.3978 without restraints) Performing minimization step: 1659. Total energy = 8408.9757 kcal/mol (8401.3094 without restraints) Performing minimization step: 1660. Total energy = 8405.8881 kcal/mol (8398.2239 without restraints) Performing minimization step: 1661. Total energy = 8402.8033 kcal/mol (8395.1411 without restraints) Performing minimization step: 1662. Total energy = 8399.7213 kcal/mol (8392.0613 without restraints) Performing minimization step: 1663. Total energy = 8396.6420 kcal/mol (8388.9840 without restraints) Performing minimization step: 1664. Total energy = 8393.5653 kcal/mol (8385.9094 without restraints) Performing minimization step: 1665. Total energy = 8390.4919 kcal/mol (8382.8383 without restraints) Performing minimization step: 1666. Total energy = 8387.4208 kcal/mol (8379.7690 without restraints) Performing minimization step: 1667. Total energy = 8384.3522 kcal/mol (8376.7025 without restraints) Performing minimization step: 1668. Total energy = 8381.2864 kcal/mol (8373.6388 without restraints) Performing minimization step: 1669. Total energy = 8378.2234 kcal/mol (8370.5779 without restraints) Performing minimization step: 1670. Total energy = 8375.1628 kcal/mol (8367.5193 without restraints) Performing minimization step: 1671. Total energy = 8372.1054 kcal/mol (8364.4640 without restraints) Performing minimization step: 1672. Total energy = 8369.0507 kcal/mol (8361.4113 without restraints) Performing minimization step: 1673. Total energy = 8365.9984 kcal/mol (8358.3611 without restraints) Performing minimization step: 1674. Total energy = 8362.9487 kcal/mol (8355.3135 without restraints) Performing minimization step: 1675. Total energy = 8359.9017 kcal/mol (8352.2685 without restraints) Performing minimization step: 1676. Total energy = 8356.8581 kcal/mol (8349.2270 without restraints) Performing minimization step: 1677. Total energy = 8353.8165 kcal/mol (8346.1875 without restraints) Performing minimization step: 1678. Total energy = 8350.7775 kcal/mol (8343.1505 without restraints) Performing minimization step: 1679. Total energy = 8347.7411 kcal/mol (8340.1162 without restraints) Performing minimization step: 1680. Total energy = 8344.7074 kcal/mol (8337.0846 without restraints) Performing minimization step: 1681. Total energy = 8341.6764 kcal/mol (8334.0557 without restraints) Performing minimization step: 1682. Total energy = 8338.6479 kcal/mol (8331.0292 without restraints) Performing minimization step: 1683. Total energy = 8335.6220 kcal/mol (8328.0054 without restraints) Performing minimization step: 1684. Total energy = 8332.5988 kcal/mol (8324.9842 without restraints) Performing minimization step: 1685. Total energy = 8329.5781 kcal/mol (8321.9655 without restraints) Performing minimization step: 1686. Total energy = 8326.5601 kcal/mol (8318.9496 without restraints) Performing minimization step: 1687. Total energy = 8323.5445 kcal/mol (8315.9360 without restraints) Performing minimization step: 1688. Total energy = 8320.5315 kcal/mol (8312.9251 without restraints) Performing minimization step: 1689. Total energy = 8317.5210 kcal/mol (8309.9165 without restraints) Performing minimization step: 1690. Total energy = 8314.5134 kcal/mol (8306.9110 without restraints) Performing minimization step: 1691. Total energy = 8311.5079 kcal/mol (8303.9076 without restraints) Performing minimization step: 1692. Total energy = 8308.5055 kcal/mol (8300.9074 without restraints) Performing minimization step: 1693. Total energy = 8305.5055 kcal/mol (8297.9093 without restraints) Performing minimization step: 1694. Total energy = 8302.5079 kcal/mol (8294.9137 without restraints) Performing minimization step: 1695. Total energy = 8299.5131 kcal/mol (8291.9210 without restraints) Performing minimization step: 1696. Total energy = 8296.5211 kcal/mol (8288.9311 without restraints) Performing minimization step: 1697. Total energy = 8293.5312 kcal/mol (8285.9431 without restraints) Performing minimization step: 1698. Total energy = 8290.5438 kcal/mol (8282.9578 without restraints) Performing minimization step: 1699. Total energy = 8287.5586 kcal/mol (8279.9746 without restraints) Performing minimization step: 1700. Total energy = 8284.5763 kcal/mol (8276.9943 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 8281.5963 kcal/mol (8274.0163 without restraints) Performing minimization step: 1702. Total energy = 8278.6188 kcal/mol (8271.0409 without restraints) Performing minimization step: 1703. Total energy = 8275.6437 kcal/mol (8268.0679 without restraints) Performing minimization step: 1704. Total energy = 8272.6712 kcal/mol (8265.0973 without restraints) Performing minimization step: 1705. Total energy = 8269.7013 kcal/mol (8262.1295 without restraints) Performing minimization step: 1706. Total energy = 8266.7338 kcal/mol (8259.1640 without restraints) Performing minimization step: 1707. Total energy = 8263.7691 kcal/mol (8256.2012 without restraints) Performing minimization step: 1708. Total energy = 8260.8062 kcal/mol (8253.2404 without restraints) Performing minimization step: 1709. Total energy = 8257.8457 kcal/mol (8250.2818 without restraints) Performing minimization step: 1710. Total energy = 8254.8877 kcal/mol (8247.3259 without restraints) Performing minimization step: 1711. Total energy = 8251.9325 kcal/mol (8244.3727 without restraints) Performing minimization step: 1712. Total energy = 8248.9796 kcal/mol (8241.4218 without restraints) Performing minimization step: 1713. Total energy = 8246.0291 kcal/mol (8238.4734 without restraints) Performing minimization step: 1714. Total energy = 8243.0811 kcal/mol (8235.5273 without restraints) Performing minimization step: 1715. Total energy = 8240.1354 kcal/mol (8232.5836 without restraints) Performing minimization step: 1716. Total energy = 8237.1923 kcal/mol (8229.6426 without restraints) Performing minimization step: 1717. Total energy = 8234.2513 kcal/mol (8226.7035 without restraints) Performing minimization step: 1718. Total energy = 8231.3128 kcal/mol (8223.7670 without restraints) Performing minimization step: 1719. Total energy = 8228.3767 kcal/mol (8220.8330 without restraints) Performing minimization step: 1720. Total energy = 8225.4432 kcal/mol (8217.9015 without restraints) Performing minimization step: 1721. Total energy = 8222.5115 kcal/mol (8214.9718 without restraints) Performing minimization step: 1722. Total energy = 8219.5823 kcal/mol (8212.0446 without restraints) Performing minimization step: 1723. Total energy = 8216.6557 kcal/mol (8209.1200 without restraints) Performing minimization step: 1724. Total energy = 8213.7315 kcal/mol (8206.1977 without restraints) Performing minimization step: 1725. Total energy = 8210.8093 kcal/mol (8203.2776 without restraints) Performing minimization step: 1726. Total energy = 8207.8898 kcal/mol (8200.3601 without restraints) Performing minimization step: 1727. Total energy = 8204.9726 kcal/mol (8197.4449 without restraints) Performing minimization step: 1728. Total energy = 8202.0579 kcal/mol (8194.5322 without restraints) Performing minimization step: 1729. Total energy = 8199.1453 kcal/mol (8191.6214 without restraints) Performing minimization step: 1730. Total energy = 8196.2349 kcal/mol (8188.7132 without restraints) Performing minimization step: 1731. Total energy = 8193.3270 kcal/mol (8185.8073 without restraints) Performing minimization step: 1732. Total energy = 8190.4213 kcal/mol (8182.9035 without restraints) Performing minimization step: 1733. Total energy = 8187.5180 kcal/mol (8180.0022 without restraints) Performing minimization step: 1734. Total energy = 8184.6170 kcal/mol (8177.1032 without restraints) Performing minimization step: 1735. Total energy = 8181.7184 kcal/mol (8174.2067 without restraints) Performing minimization step: 1736. Total energy = 8178.8220 kcal/mol (8171.3122 without restraints) Performing minimization step: 1737. Total energy = 8175.9279 kcal/mol (8168.4200 without restraints) Performing minimization step: 1738. Total energy = 8173.0361 kcal/mol (8165.5302 without restraints) Performing minimization step: 1739. Total energy = 8170.1464 kcal/mol (8162.6423 without restraints) Performing minimization step: 1740. Total energy = 8167.2591 kcal/mol (8159.7571 without restraints) Performing minimization step: 1741. Total energy = 8164.3739 kcal/mol (8156.8739 without restraints) Performing minimization step: 1742. Total energy = 8161.4914 kcal/mol (8153.9935 without restraints) Performing minimization step: 1743. Total energy = 8158.6109 kcal/mol (8151.1149 without restraints) Performing minimization step: 1744. Total energy = 8155.7325 kcal/mol (8148.2385 without restraints) Performing minimization step: 1745. Total energy = 8152.8565 kcal/mol (8145.3644 without restraints) Performing minimization step: 1746. Total energy = 8149.9825 kcal/mol (8142.4925 without restraints) Performing minimization step: 1747. Total energy = 8147.1110 kcal/mol (8139.6228 without restraints) Performing minimization step: 1748. Total energy = 8144.2416 kcal/mol (8136.7555 without restraints) Performing minimization step: 1749. Total energy = 8141.3747 kcal/mol (8133.8905 without restraints) Performing minimization step: 1750. Total energy = 8138.5098 kcal/mol (8131.0277 without restraints) Performing minimization step: 1751. Total energy = 8135.6471 kcal/mol (8128.1668 without restraints) Performing minimization step: 1752. Total energy = 8132.7866 kcal/mol (8125.3084 without restraints) Performing minimization step: 1753. Total energy = 8129.9285 kcal/mol (8122.4521 without restraints) Performing minimization step: 1754. Total energy = 8127.0723 kcal/mol (8119.5978 without restraints) Performing minimization step: 1755. Total energy = 8124.2177 kcal/mol (8116.7451 without restraints) Performing minimization step: 1756. Total energy = 8121.3657 kcal/mol (8113.8951 without restraints) Performing minimization step: 1757. Total energy = 8118.5161 kcal/mol (8111.0476 without restraints) Performing minimization step: 1758. Total energy = 8115.6690 kcal/mol (8108.2024 without restraints) Performing minimization step: 1759. Total energy = 8112.8236 kcal/mol (8105.3589 without restraints) Performing minimization step: 1760. Total energy = 8109.9803 kcal/mol (8102.5176 without restraints) Performing minimization step: 1761. Total energy = 8107.1394 kcal/mol (8099.6786 without restraints) Performing minimization step: 1762. Total energy = 8104.3005 kcal/mol (8096.8417 without restraints) Performing minimization step: 1763. Total energy = 8101.4637 kcal/mol (8094.0068 without restraints) Performing minimization step: 1764. Total energy = 8098.6289 kcal/mol (8091.1740 without restraints) Performing minimization step: 1765. Total energy = 8095.7967 kcal/mol (8088.3437 without restraints) Performing minimization step: 1766. Total energy = 8092.9660 kcal/mol (8085.5148 without restraints) Performing minimization step: 1767. Total energy = 8090.1375 kcal/mol (8082.6884 without restraints) Performing minimization step: 1768. Total energy = 8087.3115 kcal/mol (8079.8643 without restraints) Performing minimization step: 1769. Total energy = 8084.4875 kcal/mol (8077.0422 without restraints) Performing minimization step: 1770. Total energy = 8081.6655 kcal/mol (8074.2220 without restraints) Performing minimization step: 1771. Total energy = 8078.8453 kcal/mol (8071.4039 without restraints) Performing minimization step: 1772. Total energy = 8076.0274 kcal/mol (8068.5879 without restraints) Performing minimization step: 1773. Total energy = 8073.2117 kcal/mol (8065.7742 without restraints) Performing minimization step: 1774. Total energy = 8070.3979 kcal/mol (8062.9623 without restraints) Performing minimization step: 1775. Total energy = 8067.5864 kcal/mol (8060.1528 without restraints) Performing minimization step: 1776. Total energy = 8064.7770 kcal/mol (8057.3453 without restraints) Performing minimization step: 1777. Total energy = 8061.9693 kcal/mol (8054.5395 without restraints) Performing minimization step: 1778. Total energy = 8059.1641 kcal/mol (8051.7363 without restraints) Performing minimization step: 1779. Total energy = 8056.3605 kcal/mol (8048.9345 without restraints) Performing minimization step: 1780. Total energy = 8053.5588 kcal/mol (8046.1347 without restraints) Performing minimization step: 1781. Total energy = 8050.7594 kcal/mol (8043.3372 without restraints) Performing minimization step: 1782. Total energy = 8047.9619 kcal/mol (8040.5416 without restraints) Performing minimization step: 1783. Total energy = 8045.1668 kcal/mol (8037.7485 without restraints) Performing minimization step: 1784. Total energy = 8042.3740 kcal/mol (8034.9576 without restraints) Performing minimization step: 1785. Total energy = 8039.5830 kcal/mol (8032.1685 without restraints) Performing minimization step: 1786. Total energy = 8036.7936 kcal/mol (8029.3810 without restraints) Performing minimization step: 1787. Total energy = 8034.0061 kcal/mol (8026.5954 without restraints) Performing minimization step: 1788. Total energy = 8031.2212 kcal/mol (8023.8126 without restraints) Performing minimization step: 1789. Total energy = 8028.4381 kcal/mol (8021.0313 without restraints) Performing minimization step: 1790. Total energy = 8025.6569 kcal/mol (8018.2520 without restraints) Performing minimization step: 1791. Total energy = 8022.8775 kcal/mol (8015.4744 without restraints) Performing minimization step: 1792. Total energy = 8020.0998 kcal/mol (8012.6987 without restraints) Performing minimization step: 1793. Total energy = 8017.3244 kcal/mol (8009.9252 without restraints) Performing minimization step: 1794. Total energy = 8014.5511 kcal/mol (8007.1537 without restraints) Performing minimization step: 1795. Total energy = 8011.7795 kcal/mol (8004.3842 without restraints) Performing minimization step: 1796. Total energy = 8009.0101 kcal/mol (8001.6166 without restraints) Performing minimization step: 1797. Total energy = 8006.2429 kcal/mol (7998.8514 without restraints) Performing minimization step: 1798. Total energy = 8003.4777 kcal/mol (7996.0880 without restraints) Performing minimization step: 1799. Total energy = 8000.7137 kcal/mol (7993.3259 without restraints) Performing minimization step: 1800. Total energy = 7997.9519 kcal/mol (7990.5660 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 7995.1919 kcal/mol (7987.8077 without restraints) Performing minimization step: 1802. Total energy = 7992.4340 kcal/mol (7985.0518 without restraints) Performing minimization step: 1803. Total energy = 7989.6783 kcal/mol (7982.2980 without restraints) Performing minimization step: 1804. Total energy = 7986.9243 kcal/mol (7979.5459 without restraints) Performing minimization step: 1805. Total energy = 7984.1718 kcal/mol (7976.7953 without restraints) Performing minimization step: 1806. Total energy = 7981.4218 kcal/mol (7974.0472 without restraints) Performing minimization step: 1807. Total energy = 7978.6734 kcal/mol (7971.3006 without restraints) Performing minimization step: 1808. Total energy = 7975.9273 kcal/mol (7968.5564 without restraints) Performing minimization step: 1809. Total energy = 7973.1828 kcal/mol (7965.8138 without restraints) Performing minimization step: 1810. Total energy = 7970.4400 kcal/mol (7963.0729 without restraints) Performing minimization step: 1811. Total energy = 7967.6990 kcal/mol (7960.3338 without restraints) Performing minimization step: 1812. Total energy = 7964.9604 kcal/mol (7957.5970 without restraints) Performing minimization step: 1813. Total energy = 7962.2232 kcal/mol (7954.8617 without restraints) Performing minimization step: 1814. Total energy = 7959.4878 kcal/mol (7952.1282 without restraints) Performing minimization step: 1815. Total energy = 7956.7542 kcal/mol (7949.3965 without restraints) Performing minimization step: 1816. Total energy = 7954.0222 kcal/mol (7946.6663 without restraints) Performing minimization step: 1817. Total energy = 7951.2929 kcal/mol (7943.9389 without restraints) Performing minimization step: 1818. Total energy = 7948.5649 kcal/mol (7941.2128 without restraints) Performing minimization step: 1819. Total energy = 7945.8387 kcal/mol (7938.4884 without restraints) Performing minimization step: 1820. Total energy = 7943.1145 kcal/mol (7935.7661 without restraints) Performing minimization step: 1821. Total energy = 7940.3922 kcal/mol (7933.0457 without restraints) Performing minimization step: 1822. Total energy = 7937.6718 kcal/mol (7930.3271 without restraints) Performing minimization step: 1823. Total energy = 7934.9530 kcal/mol (7927.6101 without restraints) Performing minimization step: 1824. Total energy = 7932.2360 kcal/mol (7924.8950 without restraints) Performing minimization step: 1825. Total energy = 7929.5207 kcal/mol (7922.1816 without restraints) Performing minimization step: 1826. Total energy = 7926.8074 kcal/mol (7919.4703 without restraints) Performing minimization step: 1827. Total energy = 7924.0960 kcal/mol (7916.7607 without restraints) Performing minimization step: 1828. Total energy = 7921.3861 kcal/mol (7914.0527 without restraints) Performing minimization step: 1829. Total energy = 7918.6786 kcal/mol (7911.3469 without restraints) Performing minimization step: 1830. Total energy = 7915.9727 kcal/mol (7908.6429 without restraints) Performing minimization step: 1831. Total energy = 7913.2683 kcal/mol (7905.9403 without restraints) Performing minimization step: 1832. Total energy = 7910.5655 kcal/mol (7903.2394 without restraints) Performing minimization step: 1833. Total energy = 7907.8647 kcal/mol (7900.5405 without restraints) Performing minimization step: 1834. Total energy = 7905.1654 kcal/mol (7897.8429 without restraints) Performing minimization step: 1835. Total energy = 7902.4679 kcal/mol (7895.1472 without restraints) Performing minimization step: 1836. Total energy = 7899.7722 kcal/mol (7892.4535 without restraints) Performing minimization step: 1837. Total energy = 7897.0780 kcal/mol (7889.7611 without restraints) Performing minimization step: 1838. Total energy = 7894.3860 kcal/mol (7887.0709 without restraints) Performing minimization step: 1839. Total energy = 7891.6960 kcal/mol (7884.3828 without restraints) Performing minimization step: 1840. Total energy = 7889.0073 kcal/mol (7881.6959 without restraints) Performing minimization step: 1841. Total energy = 7886.3202 kcal/mol (7879.0107 without restraints) Performing minimization step: 1842. Total energy = 7883.6350 kcal/mol (7876.3272 without restraints) Performing minimization step: 1843. Total energy = 7880.9516 kcal/mol (7873.6457 without restraints) Performing minimization step: 1844. Total energy = 7878.2697 kcal/mol (7870.9657 without restraints) Performing minimization step: 1845. Total energy = 7875.5895 kcal/mol (7868.2873 without restraints) Performing minimization step: 1846. Total energy = 7872.9111 kcal/mol (7865.6108 without restraints) Performing minimization step: 1847. Total energy = 7870.2342 kcal/mol (7862.9357 without restraints) Performing minimization step: 1848. Total energy = 7867.5593 kcal/mol (7860.2625 without restraints) Performing minimization step: 1849. Total energy = 7864.8864 kcal/mol (7857.5915 without restraints) Performing minimization step: 1850. Total energy = 7862.2146 kcal/mol (7854.9214 without restraints) Performing minimization step: 1851. Total energy = 7859.5447 kcal/mol (7852.2534 without restraints) Performing minimization step: 1852. Total energy = 7856.8763 kcal/mol (7849.5869 without restraints) Performing minimization step: 1853. Total energy = 7854.2098 kcal/mol (7846.9222 without restraints) Performing minimization step: 1854. Total energy = 7851.5448 kcal/mol (7844.2590 without restraints) Performing minimization step: 1855. Total energy = 7848.8815 kcal/mol (7841.5975 without restraints) Performing minimization step: 1856. Total energy = 7846.2200 kcal/mol (7838.9378 without restraints) Performing minimization step: 1857. Total energy = 7843.5598 kcal/mol (7836.2794 without restraints) Performing minimization step: 1858. Total energy = 7840.9011 kcal/mol (7833.6225 without restraints) Performing minimization step: 1859. Total energy = 7838.2441 kcal/mol (7830.9672 without restraints) Performing minimization step: 1860. Total energy = 7835.5890 kcal/mol (7828.3141 without restraints) Performing minimization step: 1861. Total energy = 7832.9355 kcal/mol (7825.6624 without restraints) Performing minimization step: 1862. Total energy = 7830.2832 kcal/mol (7823.0119 without restraints) Performing minimization step: 1863. Total energy = 7827.6330 kcal/mol (7820.3635 without restraints) Performing minimization step: 1864. Total energy = 7824.9840 kcal/mol (7817.7161 without restraints) Performing minimization step: 1865. Total energy = 7822.3368 kcal/mol (7815.0709 without restraints) Performing minimization step: 1866. Total energy = 7819.6914 kcal/mol (7812.4273 without restraints) Performing minimization step: 1867. Total energy = 7817.0480 kcal/mol (7809.7858 without restraints) Performing minimization step: 1868. Total energy = 7814.4066 kcal/mol (7807.1461 without restraints) Performing minimization step: 1869. Total energy = 7811.7658 kcal/mol (7804.5071 without restraints) Performing minimization step: 1870. Total energy = 7809.1268 kcal/mol (7801.8699 without restraints) Performing minimization step: 1871. Total energy = 7806.4896 kcal/mol (7799.2345 without restraints) Performing minimization step: 1872. Total energy = 7803.8541 kcal/mol (7796.6008 without restraints) Performing minimization step: 1873. Total energy = 7801.2198 kcal/mol (7793.9683 without restraints) Performing minimization step: 1874. Total energy = 7798.5873 kcal/mol (7791.3375 without restraints) Performing minimization step: 1875. Total energy = 7795.9560 kcal/mol (7788.7080 without restraints) Performing minimization step: 1876. Total energy = 7793.3261 kcal/mol (7786.0799 without restraints) Performing minimization step: 1877. Total energy = 7790.6981 kcal/mol (7783.4537 without restraints) Performing minimization step: 1878. Total energy = 7788.0716 kcal/mol (7780.8289 without restraints) Performing minimization step: 1879. Total energy = 7785.4463 kcal/mol (7778.2055 without restraints) Performing minimization step: 1880. Total energy = 7782.8233 kcal/mol (7775.5844 without restraints) Performing minimization step: 1881. Total energy = 7780.2018 kcal/mol (7772.9646 without restraints) Performing minimization step: 1882. Total energy = 7777.5817 kcal/mol (7770.3462 without restraints) Performing minimization step: 1883. Total energy = 7774.9629 kcal/mol (7767.7292 without restraints) Performing minimization step: 1884. Total energy = 7772.3459 kcal/mol (7765.1140 without restraints) Performing minimization step: 1885. Total energy = 7769.7304 kcal/mol (7762.5004 without restraints) Performing minimization step: 1886. Total energy = 7767.1162 kcal/mol (7759.8878 without restraints) Performing minimization step: 1887. Total energy = 7764.5038 kcal/mol (7757.2773 without restraints) Performing minimization step: 1888. Total energy = 7761.8928 kcal/mol (7754.6681 without restraints) Performing minimization step: 1889. Total energy = 7759.2833 kcal/mol (7752.0603 without restraints) Performing minimization step: 1890. Total energy = 7756.6753 kcal/mol (7749.4541 without restraints) Performing minimization step: 1891. Total energy = 7754.0690 kcal/mol (7746.8497 without restraints) Performing minimization step: 1892. Total energy = 7751.4642 kcal/mol (7744.2465 without restraints) Performing minimization step: 1893. Total energy = 7748.8608 kcal/mol (7741.6448 without restraints) Performing minimization step: 1894. Total energy = 7746.2586 kcal/mol (7739.0443 without restraints) Performing minimization step: 1895. Total energy = 7743.6580 kcal/mol (7736.4456 without restraints) Performing minimization step: 1896. Total energy = 7741.0590 kcal/mol (7733.8484 without restraints) Performing minimization step: 1897. Total energy = 7738.4616 kcal/mol (7731.2527 without restraints) Performing minimization step: 1898. Total energy = 7735.8655 kcal/mol (7728.6584 without restraints) Performing minimization step: 1899. Total energy = 7733.2709 kcal/mol (7726.0656 without restraints) Performing minimization step: 1900. Total energy = 7730.6776 kcal/mol (7723.4738 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 7728.0859 kcal/mol (7720.8841 without restraints) Performing minimization step: 1902. Total energy = 7725.4957 kcal/mol (7718.2956 without restraints) Performing minimization step: 1903. Total energy = 7722.9069 kcal/mol (7715.7086 without restraints) Performing minimization step: 1904. Total energy = 7720.3200 kcal/mol (7713.1234 without restraints) Performing minimization step: 1905. Total energy = 7717.7345 kcal/mol (7710.5396 without restraints) Performing minimization step: 1906. Total energy = 7715.1501 kcal/mol (7707.9570 without restraints) Performing minimization step: 1907. Total energy = 7712.5671 kcal/mol (7705.3758 without restraints) Performing minimization step: 1908. Total energy = 7709.9856 kcal/mol (7702.7960 without restraints) Performing minimization step: 1909. Total energy = 7707.4055 kcal/mol (7700.2176 without restraints) Performing minimization step: 1910. Total energy = 7704.8270 kcal/mol (7697.6409 without restraints) Performing minimization step: 1911. Total energy = 7702.2498 kcal/mol (7695.0654 without restraints) Performing minimization step: 1912. Total energy = 7699.6739 kcal/mol (7692.4913 without restraints) Performing minimization step: 1913. Total energy = 7697.1000 kcal/mol (7689.9190 without restraints) Performing minimization step: 1914. Total energy = 7694.5269 kcal/mol (7687.3478 without restraints) Performing minimization step: 1915. Total energy = 7691.9555 kcal/mol (7684.7781 without restraints) Performing minimization step: 1916. Total energy = 7689.3853 kcal/mol (7682.2097 without restraints) Performing minimization step: 1917. Total energy = 7686.8166 kcal/mol (7679.6427 without restraints) Performing minimization step: 1918. Total energy = 7684.2499 kcal/mol (7677.0777 without restraints) Performing minimization step: 1919. Total energy = 7681.6839 kcal/mol (7674.5135 without restraints) Performing minimization step: 1920. Total energy = 7679.1195 kcal/mol (7671.9508 without restraints) Performing minimization step: 1921. Total energy = 7676.5566 kcal/mol (7669.3896 without restraints) Performing minimization step: 1922. Total energy = 7673.9947 kcal/mol (7666.8293 without restraints) Performing minimization step: 1923. Total energy = 7671.4342 kcal/mol (7664.2706 without restraints) Performing minimization step: 1924. Total energy = 7668.8751 kcal/mol (7661.7133 without restraints) Performing minimization step: 1925. Total energy = 7666.3173 kcal/mol (7659.1572 without restraints) Performing minimization step: 1926. Total energy = 7663.7610 kcal/mol (7656.6026 without restraints) Performing minimization step: 1927. Total energy = 7661.2060 kcal/mol (7654.0493 without restraints) Performing minimization step: 1928. Total energy = 7658.6524 kcal/mol (7651.4975 without restraints) Performing minimization step: 1929. Total energy = 7656.1001 kcal/mol (7648.9469 without restraints) Performing minimization step: 1930. Total energy = 7653.5495 kcal/mol (7646.3979 without restraints) Performing minimization step: 1931. Total energy = 7650.9999 kcal/mol (7643.8501 without restraints) Performing minimization step: 1932. Total energy = 7648.4519 kcal/mol (7641.3038 without restraints) Performing minimization step: 1933. Total energy = 7645.9050 kcal/mol (7638.7587 without restraints) Performing minimization step: 1934. Total energy = 7643.3599 kcal/mol (7636.2153 without restraints) Performing minimization step: 1935. Total energy = 7640.8159 kcal/mol (7633.6731 without restraints) Performing minimization step: 1936. Total energy = 7638.2731 kcal/mol (7631.1319 without restraints) Performing minimization step: 1937. Total energy = 7635.7316 kcal/mol (7628.5921 without restraints) Performing minimization step: 1938. Total energy = 7633.1913 kcal/mol (7626.0534 without restraints) Performing minimization step: 1939. Total energy = 7630.6521 kcal/mol (7623.5160 without restraints) Performing minimization step: 1940. Total energy = 7628.1146 kcal/mol (7620.9802 without restraints) Performing minimization step: 1941. Total energy = 7625.5785 kcal/mol (7618.4458 without restraints) Performing minimization step: 1942. Total energy = 7623.0435 kcal/mol (7615.9125 without restraints) Performing minimization step: 1943. Total energy = 7620.5097 kcal/mol (7613.3804 without restraints) Performing minimization step: 1944. Total energy = 7617.9775 kcal/mol (7610.8499 without restraints) Performing minimization step: 1945. Total energy = 7615.4466 kcal/mol (7608.3207 without restraints) Performing minimization step: 1946. Total energy = 7612.9167 kcal/mol (7605.7925 without restraints) Performing minimization step: 1947. Total energy = 7610.3882 kcal/mol (7603.2657 without restraints) Performing minimization step: 1948. Total energy = 7607.8607 kcal/mol (7600.7399 without restraints) Performing minimization step: 1949. Total energy = 7605.3357 kcal/mol (7598.2166 without restraints) Performing minimization step: 1950. Total energy = 7602.8111 kcal/mol (7595.6937 without restraints) Performing minimization step: 1951. Total energy = 7600.2884 kcal/mol (7593.1727 without restraints) Performing minimization step: 1952. Total energy = 7597.7664 kcal/mol (7590.6524 without restraints) Performing minimization step: 1953. Total energy = 7595.2460 kcal/mol (7588.1336 without restraints) Performing minimization step: 1954. Total energy = 7592.7262 kcal/mol (7585.6155 without restraints) Performing minimization step: 1955. Total energy = 7590.2082 kcal/mol (7583.0992 without restraints) Performing minimization step: 1956. Total energy = 7587.6912 kcal/mol (7580.5840 without restraints) Performing minimization step: 1957. Total energy = 7585.1755 kcal/mol (7578.0699 without restraints) Performing minimization step: 1958. Total energy = 7582.6610 kcal/mol (7575.5571 without restraints) Performing minimization step: 1959. Total energy = 7580.1477 kcal/mol (7573.0453 without restraints) Performing minimization step: 1960. Total energy = 7577.6355 kcal/mol (7570.5350 without restraints) Performing minimization step: 1961. Total energy = 7575.1248 kcal/mol (7568.0259 without restraints) Performing minimization step: 1962. Total energy = 7572.6151 kcal/mol (7565.5179 without restraints) Performing minimization step: 1963. Total energy = 7570.1071 kcal/mol (7563.0117 without restraints) Performing minimization step: 1964. Total energy = 7567.6002 kcal/mol (7560.5063 without restraints) Performing minimization step: 1965. Total energy = 7565.0940 kcal/mol (7558.0018 without restraints) Performing minimization step: 1966. Total energy = 7562.5896 kcal/mol (7555.4989 without restraints) Performing minimization step: 1967. Total energy = 7560.0861 kcal/mol (7552.9972 without restraints) Performing minimization step: 1968. Total energy = 7557.5842 kcal/mol (7550.4970 without restraints) Performing minimization step: 1969. Total energy = 7555.0835 kcal/mol (7547.9979 without restraints) Performing minimization step: 1970. Total energy = 7552.5840 kcal/mol (7545.5001 without restraints) Performing minimization step: 1971. Total energy = 7550.0855 kcal/mol (7543.0031 without restraints) Performing minimization step: 1972. Total energy = 7547.5877 kcal/mol (7540.5071 without restraints) Performing minimization step: 1973. Total energy = 7545.0915 kcal/mol (7538.0126 without restraints) Performing minimization step: 1974. Total energy = 7542.5968 kcal/mol (7535.5196 without restraints) Performing minimization step: 1975. Total energy = 7540.1032 kcal/mol (7533.0276 without restraints) Performing minimization step: 1976. Total energy = 7537.6109 kcal/mol (7530.5370 without restraints) Performing minimization step: 1977. Total energy = 7535.1199 kcal/mol (7528.0477 without restraints) Performing minimization step: 1978. Total energy = 7532.6296 kcal/mol (7525.5590 without restraints) Performing minimization step: 1979. Total energy = 7530.1406 kcal/mol (7523.0717 without restraints) Performing minimization step: 1980. Total energy = 7527.6530 kcal/mol (7520.5858 without restraints) Performing minimization step: 1981. Total energy = 7525.1664 kcal/mol (7518.1007 without restraints) Performing minimization step: 1982. Total energy = 7522.6810 kcal/mol (7515.6173 without restraints) Performing minimization step: 1983. Total energy = 7520.1974 kcal/mol (7513.1351 without restraints) Performing minimization step: 1984. Total energy = 7517.7143 kcal/mol (7510.6535 without restraints) Performing minimization step: 1985. Total energy = 7515.2322 kcal/mol (7508.1732 without restraints) Performing minimization step: 1986. Total energy = 7512.7517 kcal/mol (7505.6943 without restraints) Performing minimization step: 1987. Total energy = 7510.2721 kcal/mol (7503.2164 without restraints) Performing minimization step: 1988. Total energy = 7507.7935 kcal/mol (7500.7394 without restraints) Performing minimization step: 1989. Total energy = 7505.3162 kcal/mol (7498.2638 without restraints) Performing minimization step: 1990. Total energy = 7502.8402 kcal/mol (7495.7894 without restraints) Performing minimization step: 1991. Total energy = 7500.3653 kcal/mol (7493.3162 without restraints) Performing minimization step: 1992. Total energy = 7497.8910 kcal/mol (7490.8434 without restraints) Performing minimization step: 1993. Total energy = 7495.4183 kcal/mol (7488.3725 without restraints) Performing minimization step: 1994. Total energy = 7492.9467 kcal/mol (7485.9024 without restraints) Performing minimization step: 1995. Total energy = 7490.4765 kcal/mol (7483.4339 without restraints) Performing minimization step: 1996. Total energy = 7488.0070 kcal/mol (7480.9661 without restraints) Performing minimization step: 1997. Total energy = 7485.5389 kcal/mol (7478.4996 without restraints) Performing minimization step: 1998. Total energy = 7483.0722 kcal/mol (7476.0345 without restraints) Performing minimization step: 1999. Total energy = 7480.6065 kcal/mol (7473.5704 without restraints) Performing minimization step: 2000. Total energy = 7478.1413 kcal/mol (7471.1069 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 7475.6777 kcal/mol (7468.6449 without restraints) Performing minimization step: 2002. Total energy = 7473.2153 kcal/mol (7466.1841 without restraints) Performing minimization step: 2003. Total energy = 7470.7539 kcal/mol (7463.7244 without restraints) Performing minimization step: 2004. Total energy = 7468.2938 kcal/mol (7461.2659 without restraints) Performing minimization step: 2005. Total energy = 7465.8347 kcal/mol (7458.8085 without restraints) Performing minimization step: 2006. Total energy = 7463.3767 kcal/mol (7456.3520 without restraints) Performing minimization step: 2007. Total energy = 7460.9199 kcal/mol (7453.8970 without restraints) Performing minimization step: 2008. Total energy = 7458.4644 kcal/mol (7451.4429 without restraints) Performing minimization step: 2009. Total energy = 7456.0096 kcal/mol (7448.9898 without restraints) Performing minimization step: 2010. Total energy = 7453.5566 kcal/mol (7446.5386 without restraints) Performing minimization step: 2011. Total energy = 7451.1043 kcal/mol (7444.0878 without restraints) Performing minimization step: 2012. Total energy = 7448.6536 kcal/mol (7441.6386 without restraints) Performing minimization step: 2013. Total energy = 7446.2032 kcal/mol (7439.1898 without restraints) Performing minimization step: 2014. Total energy = 7443.7541 kcal/mol (7436.7424 without restraints) Performing minimization step: 2015. Total energy = 7441.3061 kcal/mol (7434.2961 without restraints) Performing minimization step: 2016. Total energy = 7438.8588 kcal/mol (7431.8503 without restraints) Performing minimization step: 2017. Total energy = 7436.4129 kcal/mol (7429.4064 without restraints) Performing minimization step: 2018. Total energy = 7433.9682 kcal/mol (7426.9630 without restraints) Performing minimization step: 2019. Total energy = 7431.5245 kcal/mol (7424.5209 without restraints) Performing minimization step: 2020. Total energy = 7429.0813 kcal/mol (7422.0792 without restraints) Performing minimization step: 2021. Total energy = 7426.6393 kcal/mol (7419.6388 without restraints) Performing minimization step: 2022. Total energy = 7424.1985 kcal/mol (7417.1997 without restraints) Performing minimization step: 2023. Total energy = 7421.7588 kcal/mol (7414.7616 without restraints) Performing minimization step: 2024. Total energy = 7419.3202 kcal/mol (7412.3246 without restraints) Performing minimization step: 2025. Total energy = 7416.8830 kcal/mol (7409.8890 without restraints) Performing minimization step: 2026. Total energy = 7414.4465 kcal/mol (7407.4541 without restraints) Performing minimization step: 2027. Total energy = 7412.0113 kcal/mol (7405.0205 without restraints) Performing minimization step: 2028. Total energy = 7409.5768 kcal/mol (7402.5875 without restraints) Performing minimization step: 2029. Total energy = 7407.1438 kcal/mol (7400.1561 without restraints) Performing minimization step: 2030. Total energy = 7404.7116 kcal/mol (7397.7255 without restraints) Performing minimization step: 2031. Total energy = 7402.2805 kcal/mol (7395.2961 without restraints) Performing minimization step: 2032. Total energy = 7399.8506 kcal/mol (7392.8678 without restraints) Performing minimization step: 2033. Total energy = 7397.4215 kcal/mol (7390.4402 without restraints) Performing minimization step: 2034. Total energy = 7394.9933 kcal/mol (7388.0136 without restraints) Performing minimization step: 2035. Total energy = 7392.5662 kcal/mol (7385.5881 without restraints) Performing minimization step: 2036. Total energy = 7390.1401 kcal/mol (7383.1636 without restraints) Performing minimization step: 2037. Total energy = 7387.7157 kcal/mol (7380.7409 without restraints) Performing minimization step: 2038. Total energy = 7385.2920 kcal/mol (7378.3186 without restraints) Performing minimization step: 2039. Total energy = 7382.8690 kcal/mol (7375.8974 without restraints) Performing minimization step: 2040. Total energy = 7380.4471 kcal/mol (7373.4769 without restraints) Performing minimization step: 2041. Total energy = 7378.0263 kcal/mol (7371.0577 without restraints) Performing minimization step: 2042. Total energy = 7375.6062 kcal/mol (7368.6392 without restraints) Performing minimization step: 2043. Total energy = 7373.1872 kcal/mol (7366.2218 without restraints) Performing minimization step: 2044. Total energy = 7370.7692 kcal/mol (7363.8054 without restraints) Performing minimization step: 2045. Total energy = 7368.3527 kcal/mol (7361.3904 without restraints) Performing minimization step: 2046. Total energy = 7365.9372 kcal/mol (7358.9765 without restraints) Performing minimization step: 2047. Total energy = 7363.5222 kcal/mol (7356.5631 without restraints) Performing minimization step: 2048. Total energy = 7361.1083 kcal/mol (7354.1508 without restraints) Performing minimization step: 2049. Total energy = 7358.6953 kcal/mol (7351.7394 without restraints) Performing minimization step: 2050. Total energy = 7356.2832 kcal/mol (7349.3288 without restraints) Performing minimization step: 2051. Total energy = 7353.8720 kcal/mol (7346.9192 without restraints) Performing minimization step: 2052. Total energy = 7351.4620 kcal/mol (7344.5107 without restraints) Performing minimization step: 2053. Total energy = 7349.0529 kcal/mol (7342.1032 without restraints) Performing minimization step: 2054. Total energy = 7346.6448 kcal/mol (7339.6967 without restraints) Performing minimization step: 2055. Total energy = 7344.2381 kcal/mol (7337.2915 without restraints) Performing minimization step: 2056. Total energy = 7341.8318 kcal/mol (7334.8868 without restraints) Performing minimization step: 2057. Total energy = 7339.4265 kcal/mol (7332.4831 without restraints) Performing minimization step: 2058. Total energy = 7337.0224 kcal/mol (7330.0806 without restraints) Performing minimization step: 2059. Total energy = 7334.6192 kcal/mol (7327.6789 without restraints) Performing minimization step: 2060. Total energy = 7332.2171 kcal/mol (7325.2784 without restraints) Performing minimization step: 2061. Total energy = 7329.8161 kcal/mol (7322.8789 without restraints) Performing minimization step: 2062. Total energy = 7327.4161 kcal/mol (7320.4805 without restraints) Performing minimization step: 2063. Total energy = 7325.0164 kcal/mol (7318.0823 without restraints) Performing minimization step: 2064. Total energy = 7322.6184 kcal/mol (7315.6860 without restraints) Performing minimization step: 2065. Total energy = 7320.2211 kcal/mol (7313.2902 without restraints) Performing minimization step: 2066. Total energy = 7317.8248 kcal/mol (7310.8954 without restraints) Performing minimization step: 2067. Total energy = 7315.4294 kcal/mol (7308.5016 without restraints) Performing minimization step: 2068. Total energy = 7313.0352 kcal/mol (7306.1089 without restraints) Performing minimization step: 2069. Total energy = 7310.6417 kcal/mol (7303.7169 without restraints) Performing minimization step: 2070. Total energy = 7308.2495 kcal/mol (7301.3263 without restraints) Performing minimization step: 2071. Total energy = 7305.8584 kcal/mol (7298.9368 without restraints) Performing minimization step: 2072. Total energy = 7303.4680 kcal/mol (7296.5479 without restraints) Performing minimization step: 2073. Total energy = 7301.0785 kcal/mol (7294.1600 without restraints) Performing minimization step: 2074. Total energy = 7298.6901 kcal/mol (7291.7732 without restraints) Performing minimization step: 2075. Total energy = 7296.3030 kcal/mol (7289.3876 without restraints) Performing minimization step: 2076. Total energy = 7293.9161 kcal/mol (7287.0022 without restraints) Performing minimization step: 2077. Total energy = 7291.5303 kcal/mol (7284.6179 without restraints) Performing minimization step: 2078. Total energy = 7289.1453 kcal/mol (7282.2345 without restraints) Performing minimization step: 2079. Total energy = 7286.7617 kcal/mol (7279.8525 without restraints) Performing minimization step: 2080. Total energy = 7284.3792 kcal/mol (7277.4716 without restraints) Performing minimization step: 2081. Total energy = 7281.9972 kcal/mol (7275.0909 without restraints) Performing minimization step: 2082. Total energy = 7279.6159 kcal/mol (7272.7113 without restraints) Performing minimization step: 2083. Total energy = 7277.2357 kcal/mol (7270.3325 without restraints) Performing minimization step: 2084. Total energy = 7274.8570 kcal/mol (7267.9554 without restraints) Performing minimization step: 2085. Total energy = 7272.4783 kcal/mol (7265.5782 without restraints) Performing minimization step: 2086. Total energy = 7270.1008 kcal/mol (7263.2023 without restraints) Performing minimization step: 2087. Total energy = 7267.7246 kcal/mol (7260.8276 without restraints) Performing minimization step: 2088. Total energy = 7265.3487 kcal/mol (7258.4533 without restraints) Performing minimization step: 2089. Total energy = 7262.9737 kcal/mol (7256.0798 without restraints) Performing minimization step: 2090. Total energy = 7260.6000 kcal/mol (7253.7076 without restraints) Performing minimization step: 2091. Total energy = 7258.2268 kcal/mol (7251.3360 without restraints) Performing minimization step: 2092. Total energy = 7255.8549 kcal/mol (7248.9656 without restraints) Performing minimization step: 2093. Total energy = 7253.4838 kcal/mol (7246.5960 without restraints) Performing minimization step: 2094. Total energy = 7251.1139 kcal/mol (7244.2276 without restraints) Performing minimization step: 2095. Total energy = 7248.7446 kcal/mol (7241.8599 without restraints) Performing minimization step: 2096. Total energy = 7246.3766 kcal/mol (7239.4933 without restraints) Performing minimization step: 2097. Total energy = 7244.0090 kcal/mol (7237.1273 without restraints) Performing minimization step: 2098. Total energy = 7241.6427 kcal/mol (7234.7626 without restraints) Performing minimization step: 2099. Total energy = 7239.2774 kcal/mol (7232.3987 without restraints) Performing minimization step: 2100. Total energy = 7236.9127 kcal/mol (7230.0355 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 7234.5489 kcal/mol (7227.6733 without restraints) Performing minimization step: 2102. Total energy = 7232.1860 kcal/mol (7225.3119 without restraints) Performing minimization step: 2103. Total energy = 7229.8241 kcal/mol (7222.9515 without restraints) Performing minimization step: 2104. Total energy = 7227.4630 kcal/mol (7220.5919 without restraints) Performing minimization step: 2105. Total energy = 7225.1030 kcal/mol (7218.2334 without restraints) Performing minimization step: 2106. Total energy = 7222.7437 kcal/mol (7215.8757 without restraints) Performing minimization step: 2107. Total energy = 7220.3856 kcal/mol (7213.5191 without restraints) Performing minimization step: 2108. Total energy = 7218.0281 kcal/mol (7211.1631 without restraints) Performing minimization step: 2109. Total energy = 7215.6718 kcal/mol (7208.8083 without restraints) Performing minimization step: 2110. Total energy = 7213.3161 kcal/mol (7206.4541 without restraints) Performing minimization step: 2111. Total energy = 7210.9612 kcal/mol (7204.1007 without restraints) Performing minimization step: 2112. Total energy = 7208.6075 kcal/mol (7201.7485 without restraints) Performing minimization step: 2113. Total energy = 7206.2544 kcal/mol (7199.3970 without restraints) Performing minimization step: 2114. Total energy = 7203.9023 kcal/mol (7197.0463 without restraints) Performing minimization step: 2115. Total energy = 7201.5511 kcal/mol (7194.6966 without restraints) Performing minimization step: 2116. Total energy = 7199.2009 kcal/mol (7192.3479 without restraints) Performing minimization step: 2117. Total energy = 7196.8514 kcal/mol (7190.0000 without restraints) Performing minimization step: 2118. Total energy = 7194.5028 kcal/mol (7187.6529 without restraints) Performing minimization step: 2119. Total energy = 7192.1552 kcal/mol (7185.3069 without restraints) Performing minimization step: 2120. Total energy = 7189.8087 kcal/mol (7182.9618 without restraints) Performing minimization step: 2121. Total energy = 7187.4629 kcal/mol (7180.6174 without restraints) Performing minimization step: 2122. Total energy = 7185.1178 kcal/mol (7178.2738 without restraints) Performing minimization step: 2123. Total energy = 7182.7736 kcal/mol (7175.9311 without restraints) Performing minimization step: 2124. Total energy = 7180.4300 kcal/mol (7173.5891 without restraints) Performing minimization step: 2125. Total energy = 7178.0877 kcal/mol (7171.2483 without restraints) Performing minimization step: 2126. Total energy = 7175.7463 kcal/mol (7168.9085 without restraints) Performing minimization step: 2127. Total energy = 7173.4056 kcal/mol (7166.5690 without restraints) Performing minimization step: 2128. Total energy = 7171.0656 kcal/mol (7164.2306 without restraints) Performing minimization step: 2129. Total energy = 7168.7263 kcal/mol (7161.8928 without restraints) Performing minimization step: 2130. Total energy = 7166.3881 kcal/mol (7159.5561 without restraints) Performing minimization step: 2131. Total energy = 7164.0509 kcal/mol (7157.2204 without restraints) Performing minimization step: 2132. Total energy = 7161.7145 kcal/mol (7154.8855 without restraints) Performing minimization step: 2133. Total energy = 7159.3790 kcal/mol (7152.5516 without restraints) Performing minimization step: 2134. Total energy = 7157.0445 kcal/mol (7150.2186 without restraints) Performing minimization step: 2135. Total energy = 7154.7105 kcal/mol (7147.8860 without restraints) Performing minimization step: 2136. Total energy = 7152.3776 kcal/mol (7145.5546 without restraints) Performing minimization step: 2137. Total energy = 7150.0456 kcal/mol (7143.2240 without restraints) Performing minimization step: 2138. Total energy = 7147.7149 kcal/mol (7140.8949 without restraints) Performing minimization step: 2139. Total energy = 7145.3848 kcal/mol (7138.5662 without restraints) Performing minimization step: 2140. Total energy = 7143.0553 kcal/mol (7136.2382 without restraints) Performing minimization step: 2141. Total energy = 7140.7270 kcal/mol (7133.9114 without restraints) Performing minimization step: 2142. Total energy = 7138.3991 kcal/mol (7131.5847 without restraints) Performing minimization step: 2143. Total energy = 7136.0719 kcal/mol (7129.2593 without restraints) Performing minimization step: 2144. Total energy = 7133.7459 kcal/mol (7126.9347 without restraints) Performing minimization step: 2145. Total energy = 7131.4208 kcal/mol (7124.6111 without restraints) Performing minimization step: 2146. Total energy = 7129.0962 kcal/mol (7122.2880 without restraints) Performing minimization step: 2147. Total energy = 7126.7730 kcal/mol (7119.9662 without restraints) Performing minimization step: 2148. Total energy = 7124.4503 kcal/mol (7117.6450 without restraints) Performing minimization step: 2149. Total energy = 7122.1288 kcal/mol (7115.3250 without restraints) Performing minimization step: 2150. Total energy = 7119.8075 kcal/mol (7113.0052 without restraints) Performing minimization step: 2151. Total energy = 7117.4874 kcal/mol (7110.6865 without restraints) Performing minimization step: 2152. Total energy = 7115.1681 kcal/mol (7108.3687 without restraints) Performing minimization step: 2153. Total energy = 7112.8498 kcal/mol (7106.0519 without restraints) Performing minimization step: 2154. Total energy = 7110.5324 kcal/mol (7103.7359 without restraints) Performing minimization step: 2155. Total energy = 7108.2159 kcal/mol (7101.4209 without restraints) Performing minimization step: 2156. Total energy = 7105.9002 kcal/mol (7099.1067 without restraints) Performing minimization step: 2157. Total energy = 7103.5853 kcal/mol (7096.7932 without restraints) Performing minimization step: 2158. Total energy = 7101.2712 kcal/mol (7094.4806 without restraints) Performing minimization step: 2159. Total energy = 7098.9582 kcal/mol (7092.1692 without restraints) Performing minimization step: 2160. Total energy = 7096.6457 kcal/mol (7089.8581 without restraints) Performing minimization step: 2161. Total energy = 7094.3340 kcal/mol (7087.5478 without restraints) Performing minimization step: 2162. Total energy = 7092.0236 kcal/mol (7085.2388 without restraints) Performing minimization step: 2163. Total energy = 7089.7136 kcal/mol (7082.9303 without restraints) Performing minimization step: 2164. Total energy = 7087.4045 kcal/mol (7080.6228 without restraints) Performing minimization step: 2165. Total energy = 7085.0964 kcal/mol (7078.3161 without restraints) Performing minimization step: 2166. Total energy = 7082.7893 kcal/mol (7076.0104 without restraints) Performing minimization step: 2167. Total energy = 7080.4825 kcal/mol (7073.7050 without restraints) Performing minimization step: 2168. Total energy = 7078.1768 kcal/mol (7071.4009 without restraints) Performing minimization step: 2169. Total energy = 7075.8719 kcal/mol (7069.0975 without restraints) Performing minimization step: 2170. Total energy = 7073.5682 kcal/mol (7066.7953 without restraints) Performing minimization step: 2171. Total energy = 7071.2658 kcal/mol (7064.4942 without restraints) Performing minimization step: 2172. Total energy = 7068.9635 kcal/mol (7062.1933 without restraints) Performing minimization step: 2173. Total energy = 7066.6621 kcal/mol (7059.8934 without restraints) Performing minimization step: 2174. Total energy = 7064.3616 kcal/mol (7057.5944 without restraints) Performing minimization step: 2175. Total energy = 7062.0619 kcal/mol (7055.2962 without restraints) Performing minimization step: 2176. Total energy = 7059.7633 kcal/mol (7052.9990 without restraints) Performing minimization step: 2177. Total energy = 7057.4654 kcal/mol (7050.7027 without restraints) Performing minimization step: 2178. Total energy = 7055.1684 kcal/mol (7048.4070 without restraints) Performing minimization step: 2179. Total energy = 7052.8727 kcal/mol (7046.1128 without restraints) Performing minimization step: 2180. Total energy = 7050.5773 kcal/mol (7043.8188 without restraints) Performing minimization step: 2181. Total energy = 7048.2831 kcal/mol (7041.5260 without restraints) Performing minimization step: 2182. Total energy = 7045.9893 kcal/mol (7039.2337 without restraints) Performing minimization step: 2183. Total energy = 7043.6965 kcal/mol (7036.9425 without restraints) Performing minimization step: 2184. Total energy = 7041.4045 kcal/mol (7034.6518 without restraints) Performing minimization step: 2185. Total energy = 7039.1133 kcal/mol (7032.3621 without restraints) Performing minimization step: 2186. Total energy = 7036.8231 kcal/mol (7030.0734 without restraints) Performing minimization step: 2187. Total energy = 7034.5341 kcal/mol (7027.7858 without restraints) Performing minimization step: 2188. Total energy = 7032.2455 kcal/mol (7025.4986 without restraints) Performing minimization step: 2189. Total energy = 7029.9578 kcal/mol (7023.2124 without restraints) Performing minimization step: 2190. Total energy = 7027.6704 kcal/mol (7020.9264 without restraints) Performing minimization step: 2191. Total energy = 7025.3846 kcal/mol (7018.6420 without restraints) Performing minimization step: 2192. Total energy = 7023.0996 kcal/mol (7016.3584 without restraints) Performing minimization step: 2193. Total energy = 7020.8153 kcal/mol (7014.0757 without restraints) Performing minimization step: 2194. Total energy = 7018.5320 kcal/mol (7011.7938 without restraints) Performing minimization step: 2195. Total energy = 7016.2494 kcal/mol (7009.5126 without restraints) Performing minimization step: 2196. Total energy = 7013.9671 kcal/mol (7007.2317 without restraints) Performing minimization step: 2197. Total energy = 7011.6860 kcal/mol (7004.9521 without restraints) Performing minimization step: 2198. Total energy = 7009.4056 kcal/mol (7002.6729 without restraints) Performing minimization step: 2199. Total energy = 7007.1262 kcal/mol (7000.3951 without restraints) Performing minimization step: 2200. Total energy = 7004.8477 kcal/mol (6998.1180 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 7002.5702 kcal/mol (6995.8420 without restraints) Performing minimization step: 2202. Total energy = 7000.2935 kcal/mol (6993.5668 without restraints) Performing minimization step: 2203. Total energy = 6998.0179 kcal/mol (6991.2926 without restraints) Performing minimization step: 2204. Total energy = 6995.7430 kcal/mol (6989.0191 without restraints) Performing minimization step: 2205. Total energy = 6993.4687 kcal/mol (6986.7463 without restraints) Performing minimization step: 2206. Total energy = 6991.1955 kcal/mol (6984.4745 without restraints) Performing minimization step: 2207. Total energy = 6988.9231 kcal/mol (6982.2037 without restraints) Performing minimization step: 2208. Total energy = 6986.6516 kcal/mol (6979.9335 without restraints) Performing minimization step: 2209. Total energy = 6984.3808 kcal/mol (6977.6641 without restraints) Performing minimization step: 2210. Total energy = 6982.1110 kcal/mol (6975.3957 without restraints) Performing minimization step: 2211. Total energy = 6979.8418 kcal/mol (6973.1280 without restraints) Performing minimization step: 2212. Total energy = 6977.5734 kcal/mol (6970.8609 without restraints) Performing minimization step: 2213. Total energy = 6975.3060 kcal/mol (6968.5950 without restraints) Performing minimization step: 2214. Total energy = 6973.0396 kcal/mol (6966.3301 without restraints) Performing minimization step: 2215. Total energy = 6970.7743 kcal/mol (6964.0662 without restraints) Performing minimization step: 2216. Total energy = 6968.5090 kcal/mol (6961.8023 without restraints) Performing minimization step: 2217. Total energy = 6966.2449 kcal/mol (6959.5395 without restraints) Performing minimization step: 2218. Total energy = 6963.9817 kcal/mol (6957.2779 without restraints) Performing minimization step: 2219. Total energy = 6961.7196 kcal/mol (6955.0172 without restraints) Performing minimization step: 2220. Total energy = 6959.4584 kcal/mol (6952.7574 without restraints) Performing minimization step: 2221. Total energy = 6957.1977 kcal/mol (6950.4982 without restraints) Performing minimization step: 2222. Total energy = 6954.9380 kcal/mol (6948.2398 without restraints) Performing minimization step: 2223. Total energy = 6952.6791 kcal/mol (6945.9824 without restraints) Performing minimization step: 2224. Total energy = 6950.4213 kcal/mol (6943.7260 without restraints) Performing minimization step: 2225. Total energy = 6948.1638 kcal/mol (6941.4699 without restraints) Performing minimization step: 2226. Total energy = 6945.9077 kcal/mol (6939.2152 without restraints) Performing minimization step: 2227. Total energy = 6943.6522 kcal/mol (6936.9612 without restraints) Performing minimization step: 2228. Total energy = 6941.3968 kcal/mol (6934.7072 without restraints) Performing minimization step: 2229. Total energy = 6939.1431 kcal/mol (6932.4549 without restraints) Performing minimization step: 2230. Total energy = 6936.8900 kcal/mol (6930.2032 without restraints) Performing minimization step: 2231. Total energy = 6934.6380 kcal/mol (6927.9527 without restraints) Performing minimization step: 2232. Total energy = 6932.3871 kcal/mol (6925.7031 without restraints) Performing minimization step: 2233. Total energy = 6930.1370 kcal/mol (6923.4544 without restraints) Performing minimization step: 2234. Total energy = 6927.8875 kcal/mol (6921.2063 without restraints) Performing minimization step: 2235. Total energy = 6925.6391 kcal/mol (6918.9594 without restraints) Performing minimization step: 2236. Total energy = 6923.3909 kcal/mol (6916.7126 without restraints) Performing minimization step: 2237. Total energy = 6921.1441 kcal/mol (6914.4672 without restraints) Performing minimization step: 2238. Total energy = 6918.8981 kcal/mol (6912.2228 without restraints) Performing minimization step: 2239. Total energy = 6916.6533 kcal/mol (6909.9793 without restraints) Performing minimization step: 2240. Total energy = 6914.4092 kcal/mol (6907.7365 without restraints) Performing minimization step: 2241. Total energy = 6912.1655 kcal/mol (6905.4943 without restraints) Performing minimization step: 2242. Total energy = 6909.9233 kcal/mol (6903.2534 without restraints) Performing minimization step: 2243. Total energy = 6907.6819 kcal/mol (6901.0135 without restraints) Performing minimization step: 2244. Total energy = 6905.4421 kcal/mol (6898.7751 without restraints) Performing minimization step: 2245. Total energy = 6903.2023 kcal/mol (6896.5365 without restraints) Performing minimization step: 2246. Total energy = 6900.9631 kcal/mol (6894.2989 without restraints) Performing minimization step: 2247. Total energy = 6898.7250 kcal/mol (6892.0622 without restraints) Performing minimization step: 2248. Total energy = 6896.4881 kcal/mol (6889.8267 without restraints) Performing minimization step: 2249. Total energy = 6894.2520 kcal/mol (6887.5920 without restraints) Performing minimization step: 2250. Total energy = 6892.0169 kcal/mol (6885.3584 without restraints) Performing minimization step: 2251. Total energy = 6889.7823 kcal/mol (6883.1252 without restraints) Performing minimization step: 2252. Total energy = 6887.5486 kcal/mol (6880.8929 without restraints) Performing minimization step: 2253. Total energy = 6885.3159 kcal/mol (6878.6617 without restraints) Performing minimization step: 2254. Total energy = 6883.0841 kcal/mol (6876.4312 without restraints) Performing minimization step: 2255. Total energy = 6880.8525 kcal/mol (6874.2010 without restraints) Performing minimization step: 2256. Total energy = 6878.6223 kcal/mol (6871.9722 without restraints) Performing minimization step: 2257. Total energy = 6876.3932 kcal/mol (6869.7446 without restraints) Performing minimization step: 2258. Total energy = 6874.1649 kcal/mol (6867.5176 without restraints) Performing minimization step: 2259. Total energy = 6871.9372 kcal/mol (6865.2913 without restraints) Performing minimization step: 2260. Total energy = 6869.7107 kcal/mol (6863.0662 without restraints) Performing minimization step: 2261. Total energy = 6867.4859 kcal/mol (6860.8429 without restraints) Performing minimization step: 2262. Total energy = 6865.2615 kcal/mol (6858.6198 without restraints) Performing minimization step: 2263. Total energy = 6863.0377 kcal/mol (6856.3974 without restraints) Performing minimization step: 2264. Total energy = 6860.8150 kcal/mol (6854.1762 without restraints) Performing minimization step: 2265. Total energy = 6858.5927 kcal/mol (6851.9552 without restraints) Performing minimization step: 2266. Total energy = 6856.3713 kcal/mol (6849.7352 without restraints) Performing minimization step: 2267. Total energy = 6854.1510 kcal/mol (6847.5163 without restraints) Performing minimization step: 2268. Total energy = 6851.9320 kcal/mol (6845.2987 without restraints) Performing minimization step: 2269. Total energy = 6849.7137 kcal/mol (6843.0818 without restraints) Performing minimization step: 2270. Total energy = 6847.4962 kcal/mol (6840.8657 without restraints) Performing minimization step: 2271. Total energy = 6845.2793 kcal/mol (6838.6503 without restraints) Performing minimization step: 2272. Total energy = 6843.0634 kcal/mol (6836.4357 without restraints) Performing minimization step: 2273. Total energy = 6840.8484 kcal/mol (6834.2222 without restraints) Performing minimization step: 2274. Total energy = 6838.6345 kcal/mol (6832.0095 without restraints) Performing minimization step: 2275. Total energy = 6836.4211 kcal/mol (6829.7976 without restraints) Performing minimization step: 2276. Total energy = 6834.2090 kcal/mol (6827.5869 without restraints) Performing minimization step: 2277. Total energy = 6831.9978 kcal/mol (6825.3771 without restraints) Performing minimization step: 2278. Total energy = 6829.7875 kcal/mol (6823.1682 without restraints) Performing minimization step: 2279. Total energy = 6827.5783 kcal/mol (6820.9604 without restraints) Performing minimization step: 2280. Total energy = 6825.3698 kcal/mol (6818.7534 without restraints) Performing minimization step: 2281. Total energy = 6823.1621 kcal/mol (6816.5470 without restraints) Performing minimization step: 2282. Total energy = 6820.9552 kcal/mol (6814.3417 without restraints) Performing minimization step: 2283. Total energy = 6818.7496 kcal/mol (6812.1373 without restraints) Performing minimization step: 2284. Total energy = 6816.5449 kcal/mol (6809.9339 without restraints) Performing minimization step: 2285. Total energy = 6814.3412 kcal/mol (6807.7316 without restraints) Performing minimization step: 2286. Total energy = 6812.1380 kcal/mol (6805.5299 without restraints) Performing minimization step: 2287. Total energy = 6809.9360 kcal/mol (6803.3293 without restraints) Performing minimization step: 2288. Total energy = 6807.7350 kcal/mol (6801.1296 without restraints) Performing minimization step: 2289. Total energy = 6805.5348 kcal/mol (6798.9308 without restraints) Performing minimization step: 2290. Total energy = 6803.3356 kcal/mol (6796.7330 without restraints) Performing minimization step: 2291. Total energy = 6801.1373 kcal/mol (6794.5361 without restraints) Performing minimization step: 2292. Total energy = 6798.9400 kcal/mol (6792.3402 without restraints) Performing minimization step: 2293. Total energy = 6796.7436 kcal/mol (6790.1452 without restraints) Performing minimization step: 2294. Total energy = 6794.5484 kcal/mol (6787.9514 without restraints) Performing minimization step: 2295. Total energy = 6792.3540 kcal/mol (6785.7584 without restraints) Performing minimization step: 2296. Total energy = 6790.1604 kcal/mol (6783.5662 without restraints) Performing minimization step: 2297. Total energy = 6787.9678 kcal/mol (6781.3749 without restraints) Performing minimization step: 2298. Total energy = 6785.7761 kcal/mol (6779.1847 without restraints) Performing minimization step: 2299. Total energy = 6783.5854 kcal/mol (6776.9953 without restraints) Performing minimization step: 2300. Total energy = 6781.3956 kcal/mol (6774.8070 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 6779.2066 kcal/mol (6772.6193 without restraints) Performing minimization step: 2302. Total energy = 6777.0188 kcal/mol (6770.4329 without restraints) Performing minimization step: 2303. Total energy = 6774.8324 kcal/mol (6768.2478 without restraints) Performing minimization step: 2304. Total energy = 6772.6465 kcal/mol (6766.0634 without restraints) Performing minimization step: 2305. Total energy = 6770.4614 kcal/mol (6763.8797 without restraints) Performing minimization step: 2306. Total energy = 6768.2774 kcal/mol (6761.6970 without restraints) Performing minimization step: 2307. Total energy = 6766.0942 kcal/mol (6759.5153 without restraints) Performing minimization step: 2308. Total energy = 6763.9120 kcal/mol (6757.3344 without restraints) Performing minimization step: 2309. Total energy = 6761.7308 kcal/mol (6755.1546 without restraints) Performing minimization step: 2310. Total energy = 6759.5508 kcal/mol (6752.9760 without restraints) Performing minimization step: 2311. Total energy = 6757.3718 kcal/mol (6750.7983 without restraints) Performing minimization step: 2312. Total energy = 6755.1937 kcal/mol (6748.6217 without restraints) Performing minimization step: 2313. Total energy = 6753.0164 kcal/mol (6746.4457 without restraints) Performing minimization step: 2314. Total energy = 6750.8401 kcal/mol (6744.2708 without restraints) Performing minimization step: 2315. Total energy = 6748.6652 kcal/mol (6742.0975 without restraints) Performing minimization step: 2316. Total energy = 6746.4909 kcal/mol (6739.9244 without restraints) Performing minimization step: 2317. Total energy = 6744.3179 kcal/mol (6737.7528 without restraints) Performing minimization step: 2318. Total energy = 6742.1455 kcal/mol (6735.5817 without restraints) Performing minimization step: 2319. Total energy = 6739.9744 kcal/mol (6733.4122 without restraints) Performing minimization step: 2320. Total energy = 6737.8038 kcal/mol (6731.2428 without restraints) Performing minimization step: 2321. Total energy = 6735.6341 kcal/mol (6729.0745 without restraints) Performing minimization step: 2322. Total energy = 6733.4656 kcal/mol (6726.9074 without restraints) Performing minimization step: 2323. Total energy = 6731.2980 kcal/mol (6724.7412 without restraints) Performing minimization step: 2324. Total energy = 6729.1319 kcal/mol (6722.5765 without restraints) Performing minimization step: 2325. Total energy = 6726.9665 kcal/mol (6720.4124 without restraints) Performing minimization step: 2326. Total energy = 6724.8020 kcal/mol (6718.2493 without restraints) Performing minimization step: 2327. Total energy = 6722.6384 kcal/mol (6716.0871 without restraints) Performing minimization step: 2328. Total energy = 6720.4758 kcal/mol (6713.9259 without restraints) Performing minimization step: 2329. Total energy = 6718.3142 kcal/mol (6711.7657 without restraints) Performing minimization step: 2330. Total energy = 6716.1539 kcal/mol (6709.6067 without restraints) Performing minimization step: 2331. Total energy = 6713.9943 kcal/mol (6707.4486 without restraints) Performing minimization step: 2332. Total energy = 6711.8358 kcal/mol (6705.2914 without restraints) Performing minimization step: 2333. Total energy = 6709.6780 kcal/mol (6703.1350 without restraints) Performing minimization step: 2334. Total energy = 6707.5211 kcal/mol (6700.9793 without restraints) Performing minimization step: 2335. Total energy = 6705.3655 kcal/mol (6698.8252 without restraints) Performing minimization step: 2336. Total energy = 6703.2108 kcal/mol (6696.6718 without restraints) Performing minimization step: 2337. Total energy = 6701.0572 kcal/mol (6694.5195 without restraints) Performing minimization step: 2338. Total energy = 6698.9043 kcal/mol (6692.3680 without restraints) Performing minimization step: 2339. Total energy = 6696.7528 kcal/mol (6690.2181 without restraints) Performing minimization step: 2340. Total energy = 6694.6026 kcal/mol (6688.0694 without restraints) Performing minimization step: 2341. Total energy = 6692.4532 kcal/mol (6685.9212 without restraints) Performing minimization step: 2342. Total energy = 6690.3053 kcal/mol (6683.7747 without restraints) Performing minimization step: 2343. Total energy = 6688.1580 kcal/mol (6681.6288 without restraints) Performing minimization step: 2344. Total energy = 6686.0112 kcal/mol (6679.4833 without restraints) Performing minimization step: 2345. Total energy = 6683.8666 kcal/mol (6677.3402 without restraints) Performing minimization step: 2346. Total energy = 6681.7224 kcal/mol (6675.1973 without restraints) Performing minimization step: 2347. Total energy = 6679.5794 kcal/mol (6673.0557 without restraints) Performing minimization step: 2348. Total energy = 6677.4374 kcal/mol (6670.9150 without restraints) Performing minimization step: 2349. Total energy = 6675.2964 kcal/mol (6668.7754 without restraints) Performing minimization step: 2350. Total energy = 6673.1563 kcal/mol (6666.6367 without restraints) Performing minimization step: 2351. Total energy = 6671.0171 kcal/mol (6664.4988 without restraints) Performing minimization step: 2352. Total energy = 6668.8790 kcal/mol (6662.3620 without restraints) Performing minimization step: 2353. Total energy = 6666.7421 kcal/mol (6660.2266 without restraints) Performing minimization step: 2354. Total energy = 6664.6061 kcal/mol (6658.0920 without restraints) Performing minimization step: 2355. Total energy = 6662.4713 kcal/mol (6655.9586 without restraints) Performing minimization step: 2356. Total energy = 6660.3374 kcal/mol (6653.8260 without restraints) Performing minimization step: 2357. Total energy = 6658.2048 kcal/mol (6651.6948 without restraints) Performing minimization step: 2358. Total energy = 6656.0730 kcal/mol (6649.5644 without restraints) Performing minimization step: 2359. Total energy = 6653.9423 kcal/mol (6647.4350 without restraints) Performing minimization step: 2360. Total energy = 6651.8123 kcal/mol (6645.3064 without restraints) Performing minimization step: 2361. Total energy = 6649.6838 kcal/mol (6643.1793 without restraints) Performing minimization step: 2362. Total energy = 6647.5562 kcal/mol (6641.0531 without restraints) Performing minimization step: 2363. Total energy = 6645.4297 kcal/mol (6638.9280 without restraints) Performing minimization step: 2364. Total energy = 6643.3043 kcal/mol (6636.8039 without restraints) Performing minimization step: 2365. Total energy = 6641.1799 kcal/mol (6634.6809 without restraints) Performing minimization step: 2366. Total energy = 6639.0566 kcal/mol (6632.5590 without restraints) Performing minimization step: 2367. Total energy = 6636.9345 kcal/mol (6630.4383 without restraints) Performing minimization step: 2368. Total energy = 6634.8135 kcal/mol (6628.3186 without restraints) Performing minimization step: 2369. Total energy = 6632.6934 kcal/mol (6626.1999 without restraints) Performing minimization step: 2370. Total energy = 6630.5744 kcal/mol (6624.0822 without restraints) Performing minimization step: 2371. Total energy = 6628.4565 kcal/mol (6621.9657 without restraints) Performing minimization step: 2372. Total energy = 6626.3391 kcal/mol (6619.8498 without restraints) Performing minimization step: 2373. Total energy = 6624.2237 kcal/mol (6617.7356 without restraints) Performing minimization step: 2374. Total energy = 6622.1091 kcal/mol (6615.6224 without restraints) Performing minimization step: 2375. Total energy = 6619.9956 kcal/mol (6613.5104 without restraints) Performing minimization step: 2376. Total energy = 6617.8835 kcal/mol (6611.3997 without restraints) Performing minimization step: 2377. Total energy = 6615.7727 kcal/mol (6609.2901 without restraints) Performing minimization step: 2378. Total energy = 6613.6624 kcal/mol (6607.1812 without restraints) Performing minimization step: 2379. Total energy = 6611.5534 kcal/mol (6605.0736 without restraints) Performing minimization step: 2380. Total energy = 6609.4453 kcal/mol (6602.9669 without restraints) Performing minimization step: 2381. Total energy = 6607.3383 kcal/mol (6600.8612 without restraints) Performing minimization step: 2382. Total energy = 6605.2327 kcal/mol (6598.7570 without restraints) Performing minimization step: 2383. Total energy = 6603.1277 kcal/mol (6596.6534 without restraints) Performing minimization step: 2384. Total energy = 6601.0242 kcal/mol (6594.5513 without restraints) Performing minimization step: 2385. Total energy = 6598.9219 kcal/mol (6592.4503 without restraints) Performing minimization step: 2386. Total energy = 6596.8207 kcal/mol (6590.3507 without restraints) Performing minimization step: 2387. Total energy = 6594.7205 kcal/mol (6588.2517 without restraints) Performing minimization step: 2388. Total energy = 6592.6212 kcal/mol (6586.1537 without restraints) Performing minimization step: 2389. Total energy = 6590.5230 kcal/mol (6584.0569 without restraints) Performing minimization step: 2390. Total energy = 6588.4260 kcal/mol (6581.9612 without restraints) Performing minimization step: 2391. Total energy = 6586.3301 kcal/mol (6579.8667 without restraints) Performing minimization step: 2392. Total energy = 6584.2352 kcal/mol (6577.7733 without restraints) Performing minimization step: 2393. Total energy = 6582.1422 kcal/mol (6575.6816 without restraints) Performing minimization step: 2394. Total energy = 6580.0500 kcal/mol (6573.5908 without restraints) Performing minimization step: 2395. Total energy = 6577.9592 kcal/mol (6571.5013 without restraints) Performing minimization step: 2396. Total energy = 6575.8689 kcal/mol (6569.4124 without restraints) Performing minimization step: 2397. Total energy = 6573.7798 kcal/mol (6567.3246 without restraints) Performing minimization step: 2398. Total energy = 6571.6918 kcal/mol (6565.2380 without restraints) Performing minimization step: 2399. Total energy = 6569.6051 kcal/mol (6563.1528 without restraints) Performing minimization step: 2400. Total energy = 6567.5195 kcal/mol (6561.0685 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 6565.4344 kcal/mol (6558.9847 without restraints) Performing minimization step: 2402. Total energy = 6563.3513 kcal/mol (6556.9031 without restraints) Performing minimization step: 2403. Total energy = 6561.2692 kcal/mol (6554.8223 without restraints) Performing minimization step: 2404. Total energy = 6559.1883 kcal/mol (6552.7427 without restraints) Performing minimization step: 2405. Total energy = 6557.1087 kcal/mol (6550.6646 without restraints) Performing minimization step: 2406. Total energy = 6555.0302 kcal/mol (6548.5875 without restraints) Performing minimization step: 2407. Total energy = 6552.9523 kcal/mol (6546.5109 without restraints) Performing minimization step: 2408. Total energy = 6550.8762 kcal/mol (6544.4361 without restraints) Performing minimization step: 2409. Total energy = 6548.8010 kcal/mol (6542.3623 without restraints) Performing minimization step: 2410. Total energy = 6546.7271 kcal/mol (6540.2899 without restraints) Performing minimization step: 2411. Total energy = 6544.6542 kcal/mol (6538.2182 without restraints) Performing minimization step: 2412. Total energy = 6542.5820 kcal/mol (6536.1474 without restraints) Performing minimization step: 2413. Total energy = 6540.5114 kcal/mol (6534.0783 without restraints) Performing minimization step: 2414. Total energy = 6538.4419 kcal/mol (6532.0101 without restraints) Performing minimization step: 2415. Total energy = 6536.3736 kcal/mol (6529.9430 without restraints) Performing minimization step: 2416. Total energy = 6534.3067 kcal/mol (6527.8777 without restraints) Performing minimization step: 2417. Total energy = 6532.2409 kcal/mol (6525.8130 without restraints) Performing minimization step: 2418. Total energy = 6530.1761 kcal/mol (6523.7497 without restraints) Performing minimization step: 2419. Total energy = 6528.1125 kcal/mol (6521.6876 without restraints) Performing minimization step: 2420. Total energy = 6526.0504 kcal/mol (6519.6267 without restraints) Performing minimization step: 2421. Total energy = 6523.9892 kcal/mol (6517.5669 without restraints) Performing minimization step: 2422. Total energy = 6521.9291 kcal/mol (6515.5082 without restraints) Performing minimization step: 2423. Total energy = 6519.8703 kcal/mol (6513.4509 without restraints) Performing minimization step: 2424. Total energy = 6517.8128 kcal/mol (6511.3945 without restraints) Performing minimization step: 2425. Total energy = 6515.7564 kcal/mol (6509.3397 without restraints) Performing minimization step: 2426. Total energy = 6513.7015 kcal/mol (6507.2861 without restraints) Performing minimization step: 2427. Total energy = 6511.6474 kcal/mol (6505.2333 without restraints) Performing minimization step: 2428. Total energy = 6509.5943 kcal/mol (6503.1816 without restraints) Performing minimization step: 2429. Total energy = 6507.5426 kcal/mol (6501.1312 without restraints) Performing minimization step: 2430. Total energy = 6505.4921 kcal/mol (6499.0823 without restraints) Performing minimization step: 2431. Total energy = 6503.4428 kcal/mol (6497.0342 without restraints) Performing minimization step: 2432. Total energy = 6501.3946 kcal/mol (6494.9874 without restraints) Performing minimization step: 2433. Total energy = 6499.3479 kcal/mol (6492.9421 without restraints) Performing minimization step: 2434. Total energy = 6497.3022 kcal/mol (6490.8977 without restraints) Performing minimization step: 2435. Total energy = 6495.2579 kcal/mol (6488.8548 without restraints) Performing minimization step: 2436. Total energy = 6493.2150 kcal/mol (6486.8133 without restraints) Performing minimization step: 2437. Total energy = 6491.1727 kcal/mol (6484.7723 without restraints) Performing minimization step: 2438. Total energy = 6489.1319 kcal/mol (6482.7330 without restraints) Performing minimization step: 2439. Total energy = 6487.0923 kcal/mol (6480.6946 without restraints) Performing minimization step: 2440. Total energy = 6485.0537 kcal/mol (6478.6574 without restraints) Performing minimization step: 2441. Total energy = 6483.0164 kcal/mol (6476.6215 without restraints) Performing minimization step: 2442. Total energy = 6480.9803 kcal/mol (6474.5868 without restraints) Performing minimization step: 2443. Total energy = 6478.9458 kcal/mol (6472.5536 without restraints) Performing minimization step: 2444. Total energy = 6476.9123 kcal/mol (6470.5214 without restraints) Performing minimization step: 2445. Total energy = 6474.8798 kcal/mol (6468.4904 without restraints) Performing minimization step: 2446. Total energy = 6472.8487 kcal/mol (6466.4606 without restraints) Performing minimization step: 2447. Total energy = 6470.8189 kcal/mol (6464.4323 without restraints) Performing minimization step: 2448. Total energy = 6468.7904 kcal/mol (6462.4051 without restraints) Performing minimization step: 2449. Total energy = 6466.7635 kcal/mol (6460.3796 without restraints) Performing minimization step: 2450. Total energy = 6464.7374 kcal/mol (6458.3548 without restraints) Performing minimization step: 2451. Total energy = 6462.7123 kcal/mol (6456.3311 without restraints) Performing minimization step: 2452. Total energy = 6460.6889 kcal/mol (6454.3090 without restraints) Performing minimization step: 2453. Total energy = 6458.6669 kcal/mol (6452.2884 without restraints) Performing minimization step: 2454. Total energy = 6456.6458 kcal/mol (6450.2686 without restraints) Performing minimization step: 2455. Total energy = 6454.6260 kcal/mol (6448.2502 without restraints) Performing minimization step: 2456. Total energy = 6452.6073 kcal/mol (6446.2329 without restraints) Performing minimization step: 2457. Total energy = 6450.5901 kcal/mol (6444.2171 without restraints) Performing minimization step: 2458. Total energy = 6448.5740 kcal/mol (6442.2023 without restraints) Performing minimization step: 2459. Total energy = 6446.5589 kcal/mol (6440.1886 without restraints) Performing minimization step: 2460. Total energy = 6444.5455 kcal/mol (6438.1766 without restraints) Performing minimization step: 2461. Total energy = 6442.5331 kcal/mol (6436.1656 without restraints) Performing minimization step: 2462. Total energy = 6440.5224 kcal/mol (6434.1562 without restraints) Performing minimization step: 2463. Total energy = 6438.5125 kcal/mol (6432.1478 without restraints) Performing minimization step: 2464. Total energy = 6436.5042 kcal/mol (6430.1408 without restraints) Performing minimization step: 2465. Total energy = 6434.4969 kcal/mol (6428.1348 without restraints) Performing minimization step: 2466. Total energy = 6432.4906 kcal/mol (6426.1299 without restraints) Performing minimization step: 2467. Total energy = 6430.4863 kcal/mol (6424.1271 without restraints) Performing minimization step: 2468. Total energy = 6428.4833 kcal/mol (6422.1254 without restraints) Performing minimization step: 2469. Total energy = 6426.4813 kcal/mol (6420.1248 without restraints) Performing minimization step: 2470. Total energy = 6424.4801 kcal/mol (6418.1249 without restraints) Performing minimization step: 2471. Total energy = 6422.4805 kcal/mol (6416.1267 without restraints) Performing minimization step: 2472. Total energy = 6420.4825 kcal/mol (6414.1300 without restraints) Performing minimization step: 2473. Total energy = 6418.4855 kcal/mol (6412.1343 without restraints) Performing minimization step: 2474. Total energy = 6416.4899 kcal/mol (6410.1402 without restraints) Performing minimization step: 2475. Total energy = 6414.4955 kcal/mol (6408.1471 without restraints) Performing minimization step: 2476. Total energy = 6412.5023 kcal/mol (6406.1553 without restraints) Performing minimization step: 2477. Total energy = 6410.5102 kcal/mol (6404.1646 without restraints) Performing minimization step: 2478. Total energy = 6408.5196 kcal/mol (6402.1754 without restraints) Performing minimization step: 2479. Total energy = 6406.5304 kcal/mol (6400.1876 without restraints) Performing minimization step: 2480. Total energy = 6404.5424 kcal/mol (6398.2009 without restraints) Performing minimization step: 2481. Total energy = 6402.5557 kcal/mol (6396.2155 without restraints) Performing minimization step: 2482. Total energy = 6400.5702 kcal/mol (6394.2315 without restraints) Performing minimization step: 2483. Total energy = 6398.5864 kcal/mol (6392.2490 without restraints) Performing minimization step: 2484. Total energy = 6396.6036 kcal/mol (6390.2676 without restraints) Performing minimization step: 2485. Total energy = 6394.6223 kcal/mol (6388.2876 without restraints) Performing minimization step: 2486. Total energy = 6392.6425 kcal/mol (6386.3092 without restraints) Performing minimization step: 2487. Total energy = 6390.6641 kcal/mol (6384.3322 without restraints) Performing minimization step: 2488. Total energy = 6388.6868 kcal/mol (6382.3563 without restraints) Performing minimization step: 2489. Total energy = 6386.7107 kcal/mol (6380.3815 without restraints) Performing minimization step: 2490. Total energy = 6384.7357 kcal/mol (6378.4080 without restraints) Performing minimization step: 2491. Total energy = 6382.7621 kcal/mol (6376.4357 without restraints) Performing minimization step: 2492. Total energy = 6380.7899 kcal/mol (6374.4649 without restraints) Performing minimization step: 2493. Total energy = 6378.8190 kcal/mol (6372.4953 without restraints) Performing minimization step: 2494. Total energy = 6376.8494 kcal/mol (6370.5271 without restraints) Performing minimization step: 2495. Total energy = 6374.8811 kcal/mol (6368.5601 without restraints) Performing minimization step: 2496. Total energy = 6372.9143 kcal/mol (6366.5948 without restraints) Performing minimization step: 2497. Total energy = 6370.9488 kcal/mol (6364.6306 without restraints) Performing minimization step: 2498. Total energy = 6368.9849 kcal/mol (6362.6681 without restraints) Performing minimization step: 2499. Total energy = 6367.0221 kcal/mol (6360.7067 without restraints) Performing minimization step: 2500. Total energy = 6365.0602 kcal/mol (6358.7462 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 6363.0998 kcal/mol (6356.7871 without restraints) Performing minimization step: 2502. Total energy = 6361.1410 kcal/mol (6354.8298 without restraints) Performing minimization step: 2503. Total energy = 6359.1833 kcal/mol (6352.8734 without restraints) Performing minimization step: 2504. Total energy = 6357.2271 kcal/mol (6350.9185 without restraints) Performing minimization step: 2505. Total energy = 6355.2722 kcal/mol (6348.9650 without restraints) Performing minimization step: 2506. Total energy = 6353.3188 kcal/mol (6347.0131 without restraints) Performing minimization step: 2507. Total energy = 6351.3668 kcal/mol (6345.0625 without restraints) Performing minimization step: 2508. Total energy = 6349.4160 kcal/mol (6343.1128 without restraints) Performing minimization step: 2509. Total energy = 6347.4663 kcal/mol (6341.1646 without restraints) Performing minimization step: 2510. Total energy = 6345.5182 kcal/mol (6339.2178 without restraints) Performing minimization step: 2511. Total energy = 6343.5715 kcal/mol (6337.2726 without restraints) Performing minimization step: 2512. Total energy = 6341.6262 kcal/mol (6335.3288 without restraints) Performing minimization step: 2513. Total energy = 6339.6823 kcal/mol (6333.3861 without restraints) Performing minimization step: 2514. Total energy = 6337.7398 kcal/mol (6331.4450 without restraints) Performing minimization step: 2515. Total energy = 6335.7990 kcal/mol (6329.5056 without restraints) Performing minimization step: 2516. Total energy = 6333.8591 kcal/mol (6327.5670 without restraints) Performing minimization step: 2517. Total energy = 6331.9205 kcal/mol (6325.6298 without restraints) Performing minimization step: 2518. Total energy = 6329.9835 kcal/mol (6323.6942 without restraints) Performing minimization step: 2519. Total energy = 6328.0482 kcal/mol (6321.7603 without restraints) Performing minimization step: 2520. Total energy = 6326.1133 kcal/mol (6319.8268 without restraints) Performing minimization step: 2521. Total energy = 6324.1802 kcal/mol (6317.8950 without restraints) Performing minimization step: 2522. Total energy = 6322.2486 kcal/mol (6315.9647 without restraints) Performing minimization step: 2523. Total energy = 6320.3185 kcal/mol (6314.0360 without restraints) Performing minimization step: 2524. Total energy = 6318.3895 kcal/mol (6312.1084 without restraints) Performing minimization step: 2525. Total energy = 6316.4619 kcal/mol (6310.1823 without restraints) Performing minimization step: 2526. Total energy = 6314.5358 kcal/mol (6308.2575 without restraints) Performing minimization step: 2527. Total energy = 6312.6112 kcal/mol (6306.3343 without restraints) Performing minimization step: 2528. Total energy = 6310.6877 kcal/mol (6304.4121 without restraints) Performing minimization step: 2529. Total energy = 6308.7658 kcal/mol (6302.4916 without restraints) Performing minimization step: 2530. Total energy = 6306.8452 kcal/mol (6300.5724 without restraints) Performing minimization step: 2531. Total energy = 6304.9261 kcal/mol (6298.6547 without restraints) Performing minimization step: 2532. Total energy = 6303.0088 kcal/mol (6296.7388 without restraints) Performing minimization step: 2533. Total energy = 6301.0924 kcal/mol (6294.8237 without restraints) Performing minimization step: 2534. Total energy = 6299.1774 kcal/mol (6292.9101 without restraints) Performing minimization step: 2535. Total energy = 6297.2638 kcal/mol (6290.9979 without restraints) Performing minimization step: 2536. Total energy = 6295.3519 kcal/mol (6289.0875 without restraints) Performing minimization step: 2537. Total energy = 6293.4412 kcal/mol (6287.1780 without restraints) Performing minimization step: 2538. Total energy = 6291.5322 kcal/mol (6285.2704 without restraints) Performing minimization step: 2539. Total energy = 6289.6241 kcal/mol (6283.3636 without restraints) Performing minimization step: 2540. Total energy = 6287.7175 kcal/mol (6281.4586 without restraints) Performing minimization step: 2541. Total energy = 6285.8127 kcal/mol (6279.5551 without restraints) Performing minimization step: 2542. Total energy = 6283.9089 kcal/mol (6277.6527 without restraints) Performing minimization step: 2543. Total energy = 6282.0067 kcal/mol (6275.7519 without restraints) Performing minimization step: 2544. Total energy = 6280.1060 kcal/mol (6273.8525 without restraints) Performing minimization step: 2545. Total energy = 6278.2064 kcal/mol (6271.9544 without restraints) Performing minimization step: 2546. Total energy = 6276.3082 kcal/mol (6270.0574 without restraints) Performing minimization step: 2547. Total energy = 6274.4117 kcal/mol (6268.1623 without restraints) Performing minimization step: 2548. Total energy = 6272.5162 kcal/mol (6266.2683 without restraints) Performing minimization step: 2549. Total energy = 6270.6224 kcal/mol (6264.3758 without restraints) Performing minimization step: 2550. Total energy = 6268.7295 kcal/mol (6262.4843 without restraints) Performing minimization step: 2551. Total energy = 6266.8387 kcal/mol (6260.5949 without restraints) Performing minimization step: 2552. Total energy = 6264.9495 kcal/mol (6258.7071 without restraints) Performing minimization step: 2553. Total energy = 6263.0614 kcal/mol (6256.8203 without restraints) Performing minimization step: 2554. Total energy = 6261.1750 kcal/mol (6254.9354 without restraints) Performing minimization step: 2555. Total energy = 6259.2898 kcal/mol (6253.0515 without restraints) Performing minimization step: 2556. Total energy = 6257.4059 kcal/mol (6251.1690 without restraints) Performing minimization step: 2557. Total energy = 6255.5235 kcal/mol (6249.2879 without restraints) Performing minimization step: 2558. Total energy = 6253.6424 kcal/mol (6247.4083 without restraints) Performing minimization step: 2559. Total energy = 6251.7630 kcal/mol (6245.5303 without restraints) Performing minimization step: 2560. Total energy = 6249.8848 kcal/mol (6243.6534 without restraints) Performing minimization step: 2561. Total energy = 6248.0086 kcal/mol (6241.7786 without restraints) Performing minimization step: 2562. Total energy = 6246.1334 kcal/mol (6239.9048 without restraints) Performing minimization step: 2563. Total energy = 6244.2605 kcal/mol (6238.0333 without restraints) Performing minimization step: 2564. Total energy = 6242.3880 kcal/mol (6236.1621 without restraints) Performing minimization step: 2565. Total energy = 6240.5175 kcal/mol (6234.2930 without restraints) Performing minimization step: 2566. Total energy = 6238.6480 kcal/mol (6232.4249 without restraints) Performing minimization step: 2567. Total energy = 6236.7804 kcal/mol (6230.5587 without restraints) Performing minimization step: 2568. Total energy = 6234.9138 kcal/mol (6228.6935 without restraints) Performing minimization step: 2569. Total energy = 6233.0488 kcal/mol (6226.8299 without restraints) Performing minimization step: 2570. Total energy = 6231.1856 kcal/mol (6224.9681 without restraints) Performing minimization step: 2571. Total energy = 6229.3236 kcal/mol (6223.1075 without restraints) Performing minimization step: 2572. Total energy = 6227.4633 kcal/mol (6221.2485 without restraints) Performing minimization step: 2573. Total energy = 6225.6039 kcal/mol (6219.3905 without restraints) Performing minimization step: 2574. Total energy = 6223.7464 kcal/mol (6217.5345 without restraints) Performing minimization step: 2575. Total energy = 6221.8902 kcal/mol (6215.6795 without restraints) Performing minimization step: 2576. Total energy = 6220.0355 kcal/mol (6213.8263 without restraints) Performing minimization step: 2577. Total energy = 6218.1820 kcal/mol (6211.9742 without restraints) Performing minimization step: 2578. Total energy = 6216.3302 kcal/mol (6210.1239 without restraints) Performing minimization step: 2579. Total energy = 6214.4798 kcal/mol (6208.2747 without restraints) Performing minimization step: 2580. Total energy = 6212.6311 kcal/mol (6206.4274 without restraints) Performing minimization step: 2581. Total energy = 6210.7834 kcal/mol (6204.5811 without restraints) Performing minimization step: 2582. Total energy = 6208.9374 kcal/mol (6202.7365 without restraints) Performing minimization step: 2583. Total energy = 6207.0923 kcal/mol (6200.8928 without restraints) Performing minimization step: 2584. Total energy = 6205.2488 kcal/mol (6199.0507 without restraints) Performing minimization step: 2585. Total energy = 6203.4070 kcal/mol (6197.2103 without restraints) Performing minimization step: 2586. Total energy = 6201.5665 kcal/mol (6195.3711 without restraints) Performing minimization step: 2587. Total energy = 6199.7275 kcal/mol (6193.5337 without restraints) Performing minimization step: 2588. Total energy = 6197.8904 kcal/mol (6191.6979 without restraints) Performing minimization step: 2589. Total energy = 6196.0545 kcal/mol (6189.8632 without restraints) Performing minimization step: 2590. Total energy = 6194.2200 kcal/mol (6188.0302 without restraints) Performing minimization step: 2591. Total energy = 6192.3871 kcal/mol (6186.1987 without restraints) Performing minimization step: 2592. Total energy = 6190.5554 kcal/mol (6184.3685 without restraints) Performing minimization step: 2593. Total energy = 6188.7256 kcal/mol (6182.5399 without restraints) Performing minimization step: 2594. Total energy = 6186.8971 kcal/mol (6180.7128 without restraints) Performing minimization step: 2595. Total energy = 6185.0701 kcal/mol (6178.8872 without restraints) Performing minimization step: 2596. Total energy = 6183.2448 kcal/mol (6177.0634 without restraints) Performing minimization step: 2597. Total energy = 6181.4209 kcal/mol (6175.2408 without restraints) Performing minimization step: 2598. Total energy = 6179.5989 kcal/mol (6173.4202 without restraints) Performing minimization step: 2599. Total energy = 6177.7782 kcal/mol (6171.6009 without restraints) Performing minimization step: 2600. Total energy = 6175.9586 kcal/mol (6169.7827 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 6174.1406 kcal/mol (6167.9661 without restraints) Performing minimization step: 2602. Total energy = 6172.3242 kcal/mol (6166.1511 without restraints) Performing minimization step: 2603. Total energy = 6170.5095 kcal/mol (6164.3377 without restraints) Performing minimization step: 2604. Total energy = 6168.6961 kcal/mol (6162.5260 without restraints) Performing minimization step: 2605. Total energy = 6166.8844 kcal/mol (6160.7155 without restraints) Performing minimization step: 2606. Total energy = 6165.0738 kcal/mol (6158.9063 without restraints) Performing minimization step: 2607. Total energy = 6163.2646 kcal/mol (6157.0983 without restraints) Performing minimization step: 2608. Total energy = 6161.4570 kcal/mol (6155.2922 without restraints) Performing minimization step: 2609. Total energy = 6159.6510 kcal/mol (6153.4877 without restraints) Performing minimization step: 2610. Total energy = 6157.8463 kcal/mol (6151.6844 without restraints) Performing minimization step: 2611. Total energy = 6156.0432 kcal/mol (6149.8826 without restraints) Performing minimization step: 2612. Total energy = 6154.2416 kcal/mol (6148.0824 without restraints) Performing minimization step: 2613. Total energy = 6152.4416 kcal/mol (6146.2837 without restraints) Performing minimization step: 2614. Total energy = 6150.6426 kcal/mol (6144.4862 without restraints) Performing minimization step: 2615. Total energy = 6148.8458 kcal/mol (6142.6908 without restraints) Performing minimization step: 2616. Total energy = 6147.0501 kcal/mol (6140.8963 without restraints) Performing minimization step: 2617. Total energy = 6145.2561 kcal/mol (6139.1039 without restraints) Performing minimization step: 2618. Total energy = 6143.4639 kcal/mol (6137.3131 without restraints) Performing minimization step: 2619. Total energy = 6141.6728 kcal/mol (6135.5234 without restraints) Performing minimization step: 2620. Total energy = 6139.8835 kcal/mol (6133.7354 without restraints) Performing minimization step: 2621. Total energy = 6138.0952 kcal/mol (6131.9486 without restraints) Performing minimization step: 2622. Total energy = 6136.3086 kcal/mol (6130.1633 without restraints) Performing minimization step: 2623. Total energy = 6134.5235 kcal/mol (6128.3796 without restraints) Performing minimization step: 2624. Total energy = 6132.7400 kcal/mol (6126.5976 without restraints) Performing minimization step: 2625. Total energy = 6130.9580 kcal/mol (6124.8169 without restraints) Performing minimization step: 2626. Total energy = 6129.1774 kcal/mol (6123.0378 without restraints) Performing minimization step: 2627. Total energy = 6127.3984 kcal/mol (6121.2602 without restraints) Performing minimization step: 2628. Total energy = 6125.6213 kcal/mol (6119.4845 without restraints) Performing minimization step: 2629. Total energy = 6123.8456 kcal/mol (6117.7102 without restraints) Performing minimization step: 2630. Total energy = 6122.0714 kcal/mol (6115.9374 without restraints) Performing minimization step: 2631. Total energy = 6120.2985 kcal/mol (6114.1658 without restraints) Performing minimization step: 2632. Total energy = 6118.5270 kcal/mol (6112.3958 without restraints) Performing minimization step: 2633. Total energy = 6116.7573 kcal/mol (6110.6275 without restraints) Performing minimization step: 2634. Total energy = 6114.9890 kcal/mol (6108.8606 without restraints) Performing minimization step: 2635. Total energy = 6113.2220 kcal/mol (6107.0950 without restraints) Performing minimization step: 2636. Total energy = 6111.4568 kcal/mol (6105.3311 without restraints) Performing minimization step: 2637. Total energy = 6109.6927 kcal/mol (6103.5684 without restraints) Performing minimization step: 2638. Total energy = 6107.9304 kcal/mol (6101.8075 without restraints) Performing minimization step: 2639. Total energy = 6106.1694 kcal/mol (6100.0479 without restraints) Performing minimization step: 2640. Total energy = 6104.4104 kcal/mol (6098.2903 without restraints) Performing minimization step: 2641. Total energy = 6102.6526 kcal/mol (6096.5340 without restraints) Performing minimization step: 2642. Total energy = 6100.8965 kcal/mol (6094.7792 without restraints) Performing minimization step: 2643. Total energy = 6099.1417 kcal/mol (6093.0258 without restraints) Performing minimization step: 2644. Total energy = 6097.3885 kcal/mol (6091.2740 without restraints) Performing minimization step: 2645. Total energy = 6095.6370 kcal/mol (6089.5239 without restraints) Performing minimization step: 2646. Total energy = 6093.8869 kcal/mol (6087.7752 without restraints) Performing minimization step: 2647. Total energy = 6092.1385 kcal/mol (6086.0282 without restraints) Performing minimization step: 2648. Total energy = 6090.3917 kcal/mol (6084.2828 without restraints) Performing minimization step: 2649. Total energy = 6088.6462 kcal/mol (6082.5387 without restraints) Performing minimization step: 2650. Total energy = 6086.9023 kcal/mol (6080.7963 without restraints) Performing minimization step: 2651. Total energy = 6085.1601 kcal/mol (6079.0554 without restraints) Performing minimization step: 2652. Total energy = 6083.4192 kcal/mol (6077.3159 without restraints) Performing minimization step: 2653. Total energy = 6081.6797 kcal/mol (6075.5778 without restraints) Performing minimization step: 2654. Total energy = 6079.9420 kcal/mol (6073.8416 without restraints) Performing minimization step: 2655. Total energy = 6078.2058 kcal/mol (6072.1068 without restraints) Performing minimization step: 2656. Total energy = 6076.4711 kcal/mol (6070.3735 without restraints) Performing minimization step: 2657. Total energy = 6074.7377 kcal/mol (6068.6414 without restraints) Performing minimization step: 2658. Total energy = 6073.0060 kcal/mol (6066.9111 without restraints) Performing minimization step: 2659. Total energy = 6071.2759 kcal/mol (6065.1825 without restraints) Performing minimization step: 2660. Total energy = 6069.5472 kcal/mol (6063.4550 without restraints) Performing minimization step: 2661. Total energy = 6067.8201 kcal/mol (6061.7295 without restraints) Performing minimization step: 2662. Total energy = 6066.0947 kcal/mol (6060.0056 without restraints) Performing minimization step: 2663. Total energy = 6064.3709 kcal/mol (6058.2833 without restraints) Performing minimization step: 2664. Total energy = 6062.6493 kcal/mol (6056.5630 without restraints) Performing minimization step: 2665. Total energy = 6060.9281 kcal/mol (6054.8432 without restraints) Performing minimization step: 2666. Total energy = 6059.2091 kcal/mol (6053.1255 without restraints) Performing minimization step: 2667. Total energy = 6057.4912 kcal/mol (6051.4092 without restraints) Performing minimization step: 2668. Total energy = 6055.7751 kcal/mol (6049.6943 without restraints) Performing minimization step: 2669. Total energy = 6054.0603 kcal/mol (6047.9809 without restraints) Performing minimization step: 2670. Total energy = 6052.3470 kcal/mol (6046.2690 without restraints) Performing minimization step: 2671. Total energy = 6050.6352 kcal/mol (6044.5585 without restraints) Performing minimization step: 2672. Total energy = 6048.9247 kcal/mol (6042.8496 without restraints) Performing minimization step: 2673. Total energy = 6047.2160 kcal/mol (6041.1423 without restraints) Performing minimization step: 2674. Total energy = 6045.5092 kcal/mol (6039.4369 without restraints) Performing minimization step: 2675. Total energy = 6043.8039 kcal/mol (6037.7331 without restraints) Performing minimization step: 2676. Total energy = 6042.0999 kcal/mol (6036.0304 without restraints) Performing minimization step: 2677. Total energy = 6040.3976 kcal/mol (6034.3295 without restraints) Performing minimization step: 2678. Total energy = 6038.6967 kcal/mol (6032.6300 without restraints) Performing minimization step: 2679. Total energy = 6036.9973 kcal/mol (6030.9320 without restraints) Performing minimization step: 2680. Total energy = 6035.2994 kcal/mol (6029.2356 without restraints) Performing minimization step: 2681. Total energy = 6033.6035 kcal/mol (6027.5411 without restraints) Performing minimization step: 2682. Total energy = 6031.9090 kcal/mol (6025.8476 without restraints) Performing minimization step: 2683. Total energy = 6030.2159 kcal/mol (6024.1564 without restraints) Performing minimization step: 2684. Total energy = 6028.5245 kcal/mol (6022.4664 without restraints) Performing minimization step: 2685. Total energy = 6026.8341 kcal/mol (6020.7772 without restraints) Performing minimization step: 2686. Total energy = 6025.1453 kcal/mol (6019.0900 without restraints) Performing minimization step: 2687. Total energy = 6023.4585 kcal/mol (6017.4046 without restraints) Performing minimization step: 2688. Total energy = 6021.7731 kcal/mol (6015.7205 without restraints) Performing minimization step: 2689. Total energy = 6020.0892 kcal/mol (6014.0380 without restraints) Performing minimization step: 2690. Total energy = 6018.4068 kcal/mol (6012.3571 without restraints) Performing minimization step: 2691. Total energy = 6016.7256 kcal/mol (6010.6772 without restraints) Performing minimization step: 2692. Total energy = 6015.0460 kcal/mol (6008.9989 without restraints) Performing minimization step: 2693. Total energy = 6013.3679 kcal/mol (6007.3224 without restraints) Performing minimization step: 2694. Total energy = 6011.6918 kcal/mol (6005.6479 without restraints) Performing minimization step: 2695. Total energy = 6010.0171 kcal/mol (6003.9744 without restraints) Performing minimization step: 2696. Total energy = 6008.3443 kcal/mol (6002.3030 without restraints) Performing minimization step: 2697. Total energy = 6006.6734 kcal/mol (6000.6336 without restraints) Performing minimization step: 2698. Total energy = 6005.0039 kcal/mol (5998.9655 without restraints) Performing minimization step: 2699. Total energy = 6003.3355 kcal/mol (5997.2985 without restraints) Performing minimization step: 2700. Total energy = 6001.6685 kcal/mol (5995.6329 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 6000.0035 kcal/mol (5993.9693 without restraints) Performing minimization step: 2702. Total energy = 5998.3396 kcal/mol (5992.3068 without restraints) Performing minimization step: 2703. Total energy = 5996.6772 kcal/mol (5990.6458 without restraints) Performing minimization step: 2704. Total energy = 5995.0165 kcal/mol (5988.9868 without restraints) Performing minimization step: 2705. Total energy = 5993.3575 kcal/mol (5987.3290 without restraints) Performing minimization step: 2706. Total energy = 5991.6997 kcal/mol (5985.6725 without restraints) Performing minimization step: 2707. Total energy = 5990.0435 kcal/mol (5984.0178 without restraints) Performing minimization step: 2708. Total energy = 5988.3887 kcal/mol (5982.3644 without restraints) Performing minimization step: 2709. Total energy = 5986.7356 kcal/mol (5980.7128 without restraints) Performing minimization step: 2710. Total energy = 5985.0843 kcal/mol (5979.0629 without restraints) Performing minimization step: 2711. Total energy = 5983.4342 kcal/mol (5977.4142 without restraints) Performing minimization step: 2712. Total energy = 5981.7861 kcal/mol (5975.7676 without restraints) Performing minimization step: 2713. Total energy = 5980.1393 kcal/mol (5974.1222 without restraints) Performing minimization step: 2714. Total energy = 5978.4941 kcal/mol (5972.4785 without restraints) Performing minimization step: 2715. Total energy = 5976.8506 kcal/mol (5970.8363 without restraints) Performing minimization step: 2716. Total energy = 5975.2086 kcal/mol (5969.1957 without restraints) Performing minimization step: 2717. Total energy = 5973.5681 kcal/mol (5967.5567 without restraints) Performing minimization step: 2718. Total energy = 5971.9293 kcal/mol (5965.9192 without restraints) Performing minimization step: 2719. Total energy = 5970.2912 kcal/mol (5964.2826 without restraints) Performing minimization step: 2720. Total energy = 5968.6555 kcal/mol (5962.6482 without restraints) Performing minimization step: 2721. Total energy = 5967.0209 kcal/mol (5961.0151 without restraints) Performing minimization step: 2722. Total energy = 5965.3881 kcal/mol (5959.3838 without restraints) Performing minimization step: 2723. Total energy = 5963.7567 kcal/mol (5957.7538 without restraints) Performing minimization step: 2724. Total energy = 5962.1269 kcal/mol (5956.1252 without restraints) Performing minimization step: 2725. Total energy = 5960.4986 kcal/mol (5954.4986 without restraints) Performing minimization step: 2726. Total energy = 5958.8720 kcal/mol (5952.8733 without restraints) Performing minimization step: 2727. Total energy = 5957.2465 kcal/mol (5951.2492 without restraints) Performing minimization step: 2728. Total energy = 5955.6229 kcal/mol (5949.6271 without restraints) Performing minimization step: 2729. Total energy = 5954.0008 kcal/mol (5948.0064 without restraints) Performing minimization step: 2730. Total energy = 5952.3794 kcal/mol (5946.3865 without restraints) Performing minimization step: 2731. Total energy = 5950.7604 kcal/mol (5944.7688 without restraints) Performing minimization step: 2732. Total energy = 5949.1429 kcal/mol (5943.1527 without restraints) Performing minimization step: 2733. Total energy = 5947.5270 kcal/mol (5941.5384 without restraints) Performing minimization step: 2734. Total energy = 5945.9127 kcal/mol (5939.9253 without restraints) Performing minimization step: 2735. Total energy = 5944.3000 kcal/mol (5938.3141 without restraints) Performing minimization step: 2736. Total energy = 5942.6890 kcal/mol (5936.7047 without restraints) Performing minimization step: 2737. Total energy = 5941.0796 kcal/mol (5935.0966 without restraints) Performing minimization step: 2738. Total energy = 5939.4715 kcal/mol (5933.4900 without restraints) Performing minimization step: 2739. Total energy = 5937.8651 kcal/mol (5931.8849 without restraints) Performing minimization step: 2740. Total energy = 5936.2599 kcal/mol (5930.2811 without restraints) Performing minimization step: 2741. Total energy = 5934.6562 kcal/mol (5928.6789 without restraints) Performing minimization step: 2742. Total energy = 5933.0539 kcal/mol (5927.0779 without restraints) Performing minimization step: 2743. Total energy = 5931.4534 kcal/mol (5925.4789 without restraints) Performing minimization step: 2744. Total energy = 5929.8546 kcal/mol (5923.8815 without restraints) Performing minimization step: 2745. Total energy = 5928.2571 kcal/mol (5922.2854 without restraints) Performing minimization step: 2746. Total energy = 5926.6611 kcal/mol (5920.6908 without restraints) Performing minimization step: 2747. Total energy = 5925.0671 kcal/mol (5919.0984 without restraints) Performing minimization step: 2748. Total energy = 5923.4744 kcal/mol (5917.5070 without restraints) Performing minimization step: 2749. Total energy = 5921.8828 kcal/mol (5915.9168 without restraints) Performing minimization step: 2750. Total energy = 5920.2931 kcal/mol (5914.3287 without restraints) Performing minimization step: 2751. Total energy = 5918.7053 kcal/mol (5912.7422 without restraints) Performing minimization step: 2752. Total energy = 5917.1188 kcal/mol (5911.1571 without restraints) Performing minimization step: 2753. Total energy = 5915.5337 kcal/mol (5909.5735 without restraints) Performing minimization step: 2754. Total energy = 5913.9506 kcal/mol (5907.9918 without restraints) Performing minimization step: 2755. Total energy = 5912.3685 kcal/mol (5906.4111 without restraints) Performing minimization step: 2756. Total energy = 5910.7883 kcal/mol (5904.8326 without restraints) Performing minimization step: 2757. Total energy = 5909.2096 kcal/mol (5903.2551 without restraints) Performing minimization step: 2758. Total energy = 5907.6324 kcal/mol (5901.6793 without restraints) Performing minimization step: 2759. Total energy = 5906.0566 kcal/mol (5900.1050 without restraints) Performing minimization step: 2760. Total energy = 5904.4825 kcal/mol (5898.5324 without restraints) Performing minimization step: 2761. Total energy = 5902.9095 kcal/mol (5896.9607 without restraints) Performing minimization step: 2762. Total energy = 5901.3382 kcal/mol (5895.3909 without restraints) Performing minimization step: 2763. Total energy = 5899.7684 kcal/mol (5893.8224 without restraints) Performing minimization step: 2764. Total energy = 5898.2001 kcal/mol (5892.2556 without restraints) Performing minimization step: 2765. Total energy = 5896.6338 kcal/mol (5890.6907 without restraints) Performing minimization step: 2766. Total energy = 5895.0685 kcal/mol (5889.1269 without restraints) Performing minimization step: 2767. Total energy = 5893.5048 kcal/mol (5887.5646 without restraints) Performing minimization step: 2768. Total energy = 5891.9427 kcal/mol (5886.0040 without restraints) Performing minimization step: 2769. Total energy = 5890.3821 kcal/mol (5884.4448 without restraints) Performing minimization step: 2770. Total energy = 5888.8233 kcal/mol (5882.8876 without restraints) Performing minimization step: 2771. Total energy = 5887.2660 kcal/mol (5881.3315 without restraints) Performing minimization step: 2772. Total energy = 5885.7097 kcal/mol (5879.7767 without restraints) Performing minimization step: 2773. Total energy = 5884.1559 kcal/mol (5878.2243 without restraints) Performing minimization step: 2774. Total energy = 5882.6030 kcal/mol (5876.6729 without restraints) Performing minimization step: 2775. Total energy = 5881.0516 kcal/mol (5875.1230 without restraints) Performing minimization step: 2776. Total energy = 5879.5018 kcal/mol (5873.5746 without restraints) Performing minimization step: 2777. Total energy = 5877.9538 kcal/mol (5872.0279 without restraints) Performing minimization step: 2778. Total energy = 5876.4068 kcal/mol (5870.4824 without restraints) Performing minimization step: 2779. Total energy = 5874.8616 kcal/mol (5868.9386 without restraints) Performing minimization step: 2780. Total energy = 5873.3177 kcal/mol (5867.3961 without restraints) Performing minimization step: 2781. Total energy = 5871.7753 kcal/mol (5865.8552 without restraints) Performing minimization step: 2782. Total energy = 5870.2348 kcal/mol (5864.3164 without restraints) Performing minimization step: 2783. Total energy = 5868.6958 kcal/mol (5862.7785 without restraints) Performing minimization step: 2784. Total energy = 5867.1583 kcal/mol (5861.2426 without restraints) Performing minimization step: 2785. Total energy = 5865.6224 kcal/mol (5859.7080 without restraints) Performing minimization step: 2786. Total energy = 5864.0882 kcal/mol (5858.1753 without restraints) Performing minimization step: 2787. Total energy = 5862.5552 kcal/mol (5856.6437 without restraints) Performing minimization step: 2788. Total energy = 5861.0236 kcal/mol (5855.1136 without restraints) Performing minimization step: 2789. Total energy = 5859.4935 kcal/mol (5853.5848 without restraints) Performing minimization step: 2790. Total energy = 5857.9648 kcal/mol (5852.0576 without restraints) Performing minimization step: 2791. Total energy = 5856.4376 kcal/mol (5850.5319 without restraints) Performing minimization step: 2792. Total energy = 5854.9120 kcal/mol (5849.0077 without restraints) Performing minimization step: 2793. Total energy = 5853.3878 kcal/mol (5847.4851 without restraints) Performing minimization step: 2794. Total energy = 5851.8655 kcal/mol (5845.9641 without restraints) Performing minimization step: 2795. Total energy = 5850.3447 kcal/mol (5844.4447 without restraints) Performing minimization step: 2796. Total energy = 5848.8264 kcal/mol (5842.9282 without restraints) Performing minimization step: 2797. Total energy = 5847.3088 kcal/mol (5841.4117 without restraints) Performing minimization step: 2798. Total energy = 5845.7922 kcal/mol (5839.8965 without restraints) Performing minimization step: 2799. Total energy = 5844.2775 kcal/mol (5838.3833 without restraints) Performing minimization step: 2800. Total energy = 5842.7640 kcal/mol (5836.8713 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 5841.2521 kcal/mol (5835.3609 without restraints) Performing minimization step: 2802. Total energy = 5839.7417 kcal/mol (5833.8517 without restraints) Performing minimization step: 2803. Total energy = 5838.2329 kcal/mol (5832.3444 without restraints) Performing minimization step: 2804. Total energy = 5836.7255 kcal/mol (5830.8384 without restraints) Performing minimization step: 2805. Total energy = 5835.2192 kcal/mol (5829.3338 without restraints) Performing minimization step: 2806. Total energy = 5833.7146 kcal/mol (5827.8304 without restraints) Performing minimization step: 2807. Total energy = 5832.2113 kcal/mol (5826.3286 without restraints) Performing minimization step: 2808. Total energy = 5830.7097 kcal/mol (5824.8283 without restraints) Performing minimization step: 2809. Total energy = 5829.2096 kcal/mol (5823.3297 without restraints) Performing minimization step: 2810. Total energy = 5827.7112 kcal/mol (5821.8331 without restraints) Performing minimization step: 2811. Total energy = 5826.2144 kcal/mol (5820.3374 without restraints) Performing minimization step: 2812. Total energy = 5824.7188 kcal/mol (5818.8433 without restraints) Performing minimization step: 2813. Total energy = 5823.2245 kcal/mol (5817.3505 without restraints) Performing minimization step: 2814. Total energy = 5821.7320 kcal/mol (5815.8594 without restraints) Performing minimization step: 2815. Total energy = 5820.2410 kcal/mol (5814.3699 without restraints) Performing minimization step: 2816. Total energy = 5818.7516 kcal/mol (5812.8818 without restraints) Performing minimization step: 2817. Total energy = 5817.2634 kcal/mol (5811.3951 without restraints) Performing minimization step: 2818. Total energy = 5815.7772 kcal/mol (5809.9105 without restraints) Performing minimization step: 2819. Total energy = 5814.2921 kcal/mol (5808.4268 without restraints) Performing minimization step: 2820. Total energy = 5812.8089 kcal/mol (5806.9449 without restraints) Performing minimization step: 2821. Total energy = 5811.3273 kcal/mol (5805.4649 without restraints) Performing minimization step: 2822. Total energy = 5809.8469 kcal/mol (5803.9859 without restraints) Performing minimization step: 2823. Total energy = 5808.3678 kcal/mol (5802.5082 without restraints) Performing minimization step: 2824. Total energy = 5806.8902 kcal/mol (5801.0320 without restraints) Performing minimization step: 2825. Total energy = 5805.4140 kcal/mol (5799.5572 without restraints) Performing minimization step: 2826. Total energy = 5803.9395 kcal/mol (5798.0842 without restraints) Performing minimization step: 2827. Total energy = 5802.4661 kcal/mol (5796.6121 without restraints) Performing minimization step: 2828. Total energy = 5800.9941 kcal/mol (5795.1418 without restraints) Performing minimization step: 2829. Total energy = 5799.5245 kcal/mol (5793.6736 without restraints) Performing minimization step: 2830. Total energy = 5798.0560 kcal/mol (5792.2065 without restraints) Performing minimization step: 2831. Total energy = 5796.5887 kcal/mol (5790.7407 without restraints) Performing minimization step: 2832. Total energy = 5795.1233 kcal/mol (5789.2767 without restraints) Performing minimization step: 2833. Total energy = 5793.6590 kcal/mol (5787.8138 without restraints) Performing minimization step: 2834. Total energy = 5792.1964 kcal/mol (5786.3527 without restraints) Performing minimization step: 2835. Total energy = 5790.7356 kcal/mol (5784.8935 without restraints) Performing minimization step: 2836. Total energy = 5789.2762 kcal/mol (5783.4354 without restraints) Performing minimization step: 2837. Total energy = 5787.8179 kcal/mol (5781.9785 without restraints) Performing minimization step: 2838. Total energy = 5786.3611 kcal/mol (5780.5232 without restraints) Performing minimization step: 2839. Total energy = 5784.9060 kcal/mol (5779.0697 without restraints) Performing minimization step: 2840. Total energy = 5783.4522 kcal/mol (5777.6172 without restraints) Performing minimization step: 2841. Total energy = 5781.9998 kcal/mol (5776.1663 without restraints) Performing minimization step: 2842. Total energy = 5780.5489 kcal/mol (5774.7169 without restraints) Performing minimization step: 2843. Total energy = 5779.0996 kcal/mol (5773.2690 without restraints) Performing minimization step: 2844. Total energy = 5777.6517 kcal/mol (5771.8226 without restraints) Performing minimization step: 2845. Total energy = 5776.2051 kcal/mol (5770.3774 without restraints) Performing minimization step: 2846. Total energy = 5774.7604 kcal/mol (5768.9341 without restraints) Performing minimization step: 2847. Total energy = 5773.3168 kcal/mol (5767.4920 without restraints) Performing minimization step: 2848. Total energy = 5771.8743 kcal/mol (5766.0508 without restraints) Performing minimization step: 2849. Total energy = 5770.4334 kcal/mol (5764.6115 without restraints) Performing minimization step: 2850. Total energy = 5768.9941 kcal/mol (5763.1736 without restraints) Performing minimization step: 2851. Total energy = 5767.5565 kcal/mol (5761.7375 without restraints) Performing minimization step: 2852. Total energy = 5766.1202 kcal/mol (5760.3026 without restraints) Performing minimization step: 2853. Total energy = 5764.6857 kcal/mol (5758.8695 without restraints) Performing minimization step: 2854. Total energy = 5763.2523 kcal/mol (5757.4376 without restraints) Performing minimization step: 2855. Total energy = 5761.8203 kcal/mol (5756.0071 without restraints) Performing minimization step: 2856. Total energy = 5760.3898 kcal/mol (5754.5780 without restraints) Performing minimization step: 2857. Total energy = 5758.9608 kcal/mol (5753.1506 without restraints) Performing minimization step: 2858. Total energy = 5757.5339 kcal/mol (5751.7251 without restraints) Performing minimization step: 2859. Total energy = 5756.1080 kcal/mol (5750.3006 without restraints) Performing minimization step: 2860. Total energy = 5754.6833 kcal/mol (5748.8773 without restraints) Performing minimization step: 2861. Total energy = 5753.2600 kcal/mol (5747.4555 without restraints) Performing minimization step: 2862. Total energy = 5751.8380 kcal/mol (5746.0349 without restraints) Performing minimization step: 2863. Total energy = 5750.4176 kcal/mol (5744.6160 without restraints) Performing minimization step: 2864. Total energy = 5748.9987 kcal/mol (5743.1985 without restraints) Performing minimization step: 2865. Total energy = 5747.5809 kcal/mol (5741.7822 without restraints) Performing minimization step: 2866. Total energy = 5746.1651 kcal/mol (5740.3679 without restraints) Performing minimization step: 2867. Total energy = 5744.7506 kcal/mol (5738.9549 without restraints) Performing minimization step: 2868. Total energy = 5743.3374 kcal/mol (5737.5431 without restraints) Performing minimization step: 2869. Total energy = 5741.9257 kcal/mol (5736.1329 without restraints) Performing minimization step: 2870. Total energy = 5740.5155 kcal/mol (5734.7241 without restraints) Performing minimization step: 2871. Total energy = 5739.1066 kcal/mol (5733.3167 without restraints) Performing minimization step: 2872. Total energy = 5737.6993 kcal/mol (5731.9110 without restraints) Performing minimization step: 2873. Total energy = 5736.2938 kcal/mol (5730.5069 without restraints) Performing minimization step: 2874. Total energy = 5734.8898 kcal/mol (5729.1042 without restraints) Performing minimization step: 2875. Total energy = 5733.4868 kcal/mol (5727.7028 without restraints) Performing minimization step: 2876. Total energy = 5732.0854 kcal/mol (5726.3028 without restraints) Performing minimization step: 2877. Total energy = 5730.6854 kcal/mol (5724.9042 without restraints) Performing minimization step: 2878. Total energy = 5729.2870 kcal/mol (5723.5072 without restraints) Performing minimization step: 2879. Total energy = 5727.8898 kcal/mol (5722.1115 without restraints) Performing minimization step: 2880. Total energy = 5726.4937 kcal/mol (5720.7169 without restraints) Performing minimization step: 2881. Total energy = 5725.0995 kcal/mol (5719.3241 without restraints) Performing minimization step: 2882. Total energy = 5723.7066 kcal/mol (5717.9327 without restraints) Performing minimization step: 2883. Total energy = 5722.3147 kcal/mol (5716.5422 without restraints) Performing minimization step: 2884. Total energy = 5720.9252 kcal/mol (5715.1542 without restraints) Performing minimization step: 2885. Total energy = 5719.5367 kcal/mol (5713.7672 without restraints) Performing minimization step: 2886. Total energy = 5718.1493 kcal/mol (5712.3813 without restraints) Performing minimization step: 2887. Total energy = 5716.7634 kcal/mol (5710.9968 without restraints) Performing minimization step: 2888. Total energy = 5715.3790 kcal/mol (5709.6139 without restraints) Performing minimization step: 2889. Total energy = 5713.9959 kcal/mol (5708.2322 without restraints) Performing minimization step: 2890. Total energy = 5712.6142 kcal/mol (5706.8520 without restraints) Performing minimization step: 2891. Total energy = 5711.2339 kcal/mol (5705.4733 without restraints) Performing minimization step: 2892. Total energy = 5709.8554 kcal/mol (5704.0961 without restraints) Performing minimization step: 2893. Total energy = 5708.4777 kcal/mol (5702.7199 without restraints) Performing minimization step: 2894. Total energy = 5707.1019 kcal/mol (5701.3456 without restraints) Performing minimization step: 2895. Total energy = 5705.7280 kcal/mol (5699.9731 without restraints) Performing minimization step: 2896. Total energy = 5704.3549 kcal/mol (5698.6014 without restraints) Performing minimization step: 2897. Total energy = 5702.9830 kcal/mol (5697.2311 without restraints) Performing minimization step: 2898. Total energy = 5701.6126 kcal/mol (5695.8622 without restraints) Performing minimization step: 2899. Total energy = 5700.2438 kcal/mol (5694.4948 without restraints) Performing minimization step: 2900. Total energy = 5698.8766 kcal/mol (5693.1291 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 5697.5105 kcal/mol (5691.7644 without restraints) Performing minimization step: 2902. Total energy = 5696.1457 kcal/mol (5690.4011 without restraints) Performing minimization step: 2903. Total energy = 5694.7824 kcal/mol (5689.0393 without restraints) Performing minimization step: 2904. Total energy = 5693.4208 kcal/mol (5687.6792 without restraints) Performing minimization step: 2905. Total energy = 5692.0602 kcal/mol (5686.3200 without restraints) Performing minimization step: 2906. Total energy = 5690.7010 kcal/mol (5684.9623 without restraints) Performing minimization step: 2907. Total energy = 5689.3437 kcal/mol (5683.6064 without restraints) Performing minimization step: 2908. Total energy = 5687.9873 kcal/mol (5682.2514 without restraints) Performing minimization step: 2909. Total energy = 5686.6325 kcal/mol (5680.8982 without restraints) Performing minimization step: 2910. Total energy = 5685.2789 kcal/mol (5679.5460 without restraints) Performing minimization step: 2911. Total energy = 5683.9269 kcal/mol (5678.1955 without restraints) Performing minimization step: 2912. Total energy = 5682.5761 kcal/mol (5676.8461 without restraints) Performing minimization step: 2913. Total energy = 5681.2263 kcal/mol (5675.4980 without restraints) Performing minimization step: 2914. Total energy = 5679.8784 kcal/mol (5674.1515 without restraints) Performing minimization step: 2915. Total energy = 5678.5319 kcal/mol (5672.8063 without restraints) Performing minimization step: 2916. Total energy = 5677.1868 kcal/mol (5671.4627 without restraints) Performing minimization step: 2917. Total energy = 5675.8429 kcal/mol (5670.1202 without restraints) Performing minimization step: 2918. Total energy = 5674.5008 kcal/mol (5668.7796 without restraints) Performing minimization step: 2919. Total energy = 5673.1598 kcal/mol (5667.4401 without restraints) Performing minimization step: 2920. Total energy = 5671.8196 kcal/mol (5666.1014 without restraints) Performing minimization step: 2921. Total energy = 5670.4814 kcal/mol (5664.7647 without restraints) Performing minimization step: 2922. Total energy = 5669.1445 kcal/mol (5663.4292 without restraints) Performing minimization step: 2923. Total energy = 5667.8090 kcal/mol (5662.0952 without restraints) Performing minimization step: 2924. Total energy = 5666.4747 kcal/mol (5660.7624 without restraints) Performing minimization step: 2925. Total energy = 5665.1418 kcal/mol (5659.4310 without restraints) Performing minimization step: 2926. Total energy = 5663.8104 kcal/mol (5658.1010 without restraints) Performing minimization step: 2927. Total energy = 5662.4807 kcal/mol (5656.7729 without restraints) Performing minimization step: 2928. Total energy = 5661.1525 kcal/mol (5655.4461 without restraints) Performing minimization step: 2929. Total energy = 5659.8256 kcal/mol (5654.1206 without restraints) Performing minimization step: 2930. Total energy = 5658.4991 kcal/mol (5652.7956 without restraints) Performing minimization step: 2931. Total energy = 5657.1744 kcal/mol (5651.4723 without restraints) Performing minimization step: 2932. Total energy = 5655.8511 kcal/mol (5650.1505 without restraints) Performing minimization step: 2933. Total energy = 5654.5291 kcal/mol (5648.8300 without restraints) Performing minimization step: 2934. Total energy = 5653.2086 kcal/mol (5647.5111 without restraints) Performing minimization step: 2935. Total energy = 5651.8898 kcal/mol (5646.1937 without restraints) Performing minimization step: 2936. Total energy = 5650.5720 kcal/mol (5644.8774 without restraints) Performing minimization step: 2937. Total energy = 5649.2558 kcal/mol (5643.5627 without restraints) Performing minimization step: 2938. Total energy = 5647.9409 kcal/mol (5642.2491 without restraints) Performing minimization step: 2939. Total energy = 5646.6271 kcal/mol (5640.9368 without restraints) Performing minimization step: 2940. Total energy = 5645.3146 kcal/mol (5639.6258 without restraints) Performing minimization step: 2941. Total energy = 5644.0034 kcal/mol (5638.3161 without restraints) Performing minimization step: 2942. Total energy = 5642.6936 kcal/mol (5637.0077 without restraints) Performing minimization step: 2943. Total energy = 5641.3850 kcal/mol (5635.7007 without restraints) Performing minimization step: 2944. Total energy = 5640.0787 kcal/mol (5634.3958 without restraints) Performing minimization step: 2945. Total energy = 5638.7731 kcal/mol (5633.0917 without restraints) Performing minimization step: 2946. Total energy = 5637.4689 kcal/mol (5631.7889 without restraints) Performing minimization step: 2947. Total energy = 5636.1660 kcal/mol (5630.4877 without restraints) Performing minimization step: 2948. Total energy = 5634.8642 kcal/mol (5629.1872 without restraints) Performing minimization step: 2949. Total energy = 5633.5641 kcal/mol (5627.8886 without restraints) Performing minimization step: 2950. Total energy = 5632.2653 kcal/mol (5626.5914 without restraints) Performing minimization step: 2951. Total energy = 5630.9679 kcal/mol (5625.2954 without restraints) Performing minimization step: 2952. Total energy = 5629.6716 kcal/mol (5624.0005 without restraints) Performing minimization step: 2953. Total energy = 5628.3768 kcal/mol (5622.7072 without restraints) Performing minimization step: 2954. Total energy = 5627.0831 kcal/mol (5621.4150 without restraints) Performing minimization step: 2955. Total energy = 5625.7907 kcal/mol (5620.1240 without restraints) Performing minimization step: 2956. Total energy = 5624.4997 kcal/mol (5618.8345 without restraints) Performing minimization step: 2957. Total energy = 5623.2101 kcal/mol (5617.5465 without restraints) Performing minimization step: 2958. Total energy = 5621.9217 kcal/mol (5616.2595 without restraints) Performing minimization step: 2959. Total energy = 5620.6348 kcal/mol (5614.9741 without restraints) Performing minimization step: 2960. Total energy = 5619.3497 kcal/mol (5613.6906 without restraints) Performing minimization step: 2961. Total energy = 5618.0655 kcal/mol (5612.4077 without restraints) Performing minimization step: 2962. Total energy = 5616.7829 kcal/mol (5611.1266 without restraints) Performing minimization step: 2963. Total energy = 5615.5011 kcal/mol (5609.8463 without restraints) Performing minimization step: 2964. Total energy = 5614.2207 kcal/mol (5608.5675 without restraints) Performing minimization step: 2965. Total energy = 5612.9419 kcal/mol (5607.2901 without restraints) Performing minimization step: 2966. Total energy = 5611.6643 kcal/mol (5606.0139 without restraints) Performing minimization step: 2967. Total energy = 5610.3877 kcal/mol (5604.7388 without restraints) Performing minimization step: 2968. Total energy = 5609.1124 kcal/mol (5603.4650 without restraints) Performing minimization step: 2969. Total energy = 5607.8386 kcal/mol (5602.1927 without restraints) Performing minimization step: 2970. Total energy = 5606.5660 kcal/mol (5600.9215 without restraints) Performing minimization step: 2971. Total energy = 5605.2947 kcal/mol (5599.6517 without restraints) Performing minimization step: 2972. Total energy = 5604.0243 kcal/mol (5598.3828 without restraints) Performing minimization step: 2973. Total energy = 5602.7550 kcal/mol (5597.1151 without restraints) Performing minimization step: 2974. Total energy = 5601.4876 kcal/mol (5595.8491 without restraints) Performing minimization step: 2975. Total energy = 5600.2212 kcal/mol (5594.5842 without restraints) Performing minimization step: 2976. Total energy = 5598.9563 kcal/mol (5593.3207 without restraints) Performing minimization step: 2977. Total energy = 5597.6931 kcal/mol (5592.0591 without restraints) Performing minimization step: 2978. Total energy = 5596.4310 kcal/mol (5590.7984 without restraints) Performing minimization step: 2979. Total energy = 5595.1709 kcal/mol (5589.5397 without restraints) Performing minimization step: 2980. Total energy = 5593.9113 kcal/mol (5588.2817 without restraints) Performing minimization step: 2981. Total energy = 5592.6530 kcal/mol (5587.0249 without restraints) Performing minimization step: 2982. Total energy = 5591.3959 kcal/mol (5585.7692 without restraints) Performing minimization step: 2983. Total energy = 5590.1403 kcal/mol (5584.5153 without restraints) Performing minimization step: 2984. Total energy = 5588.8860 kcal/mol (5583.2623 without restraints) Performing minimization step: 2985. Total energy = 5587.6327 kcal/mol (5582.0105 without restraints) Performing minimization step: 2986. Total energy = 5586.3809 kcal/mol (5580.7601 without restraints) Performing minimization step: 2987. Total energy = 5585.1305 kcal/mol (5579.5112 without restraints) Performing minimization step: 2988. Total energy = 5583.8812 kcal/mol (5578.2634 without restraints) Performing minimization step: 2989. Total energy = 5582.6330 kcal/mol (5577.0167 without restraints) Performing minimization step: 2990. Total energy = 5581.3861 kcal/mol (5575.7712 without restraints) Performing minimization step: 2991. Total energy = 5580.1403 kcal/mol (5574.5268 without restraints) Performing minimization step: 2992. Total energy = 5578.8956 kcal/mol (5573.2837 without restraints) Performing minimization step: 2993. Total energy = 5577.6527 kcal/mol (5572.0425 without restraints) Performing minimization step: 2994. Total energy = 5576.4111 kcal/mol (5570.8024 without restraints) Performing minimization step: 2995. Total energy = 5575.1706 kcal/mol (5569.5632 without restraints) Performing minimization step: 2996. Total energy = 5573.9315 kcal/mol (5568.3256 without restraints) Performing minimization step: 2997. Total energy = 5572.6940 kcal/mol (5567.0896 without restraints) Performing minimization step: 2998. Total energy = 5571.4574 kcal/mol (5565.8545 without restraints) Performing minimization step: 2999. Total energy = 5570.2223 kcal/mol (5564.6208 without restraints) Performing minimization step: 3000. Total energy = 5568.9879 kcal/mol (5563.3880 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 5567.7550 kcal/mol (5562.1567 without restraints) Performing minimization step: 3002. Total energy = 5566.5233 kcal/mol (5560.9263 without restraints) Performing minimization step: 3003. Total energy = 5565.2928 kcal/mol (5559.6972 without restraints) Performing minimization step: 3004. Total energy = 5564.0637 kcal/mol (5558.4697 without restraints) Performing minimization step: 3005. Total energy = 5562.8357 kcal/mol (5557.2431 without restraints) Performing minimization step: 3006. Total energy = 5561.6089 kcal/mol (5556.0178 without restraints) Performing minimization step: 3007. Total energy = 5560.3833 kcal/mol (5554.7937 without restraints) Performing minimization step: 3008. Total energy = 5559.1589 kcal/mol (5553.5709 without restraints) Performing minimization step: 3009. Total energy = 5557.9358 kcal/mol (5552.3492 without restraints) Performing minimization step: 3010. Total energy = 5556.7141 kcal/mol (5551.1292 without restraints) Performing minimization step: 3011. Total energy = 5555.4937 kcal/mol (5549.9101 without restraints) Performing minimization step: 3012. Total energy = 5554.2744 kcal/mol (5548.6922 without restraints) Performing minimization step: 3013. Total energy = 5553.0562 kcal/mol (5547.4755 without restraints) Performing minimization step: 3014. Total energy = 5551.8393 kcal/mol (5546.2601 without restraints) Performing minimization step: 3015. Total energy = 5550.6237 kcal/mol (5545.0461 without restraints) Performing minimization step: 3016. Total energy = 5549.4093 kcal/mol (5543.8331 without restraints) Performing minimization step: 3017. Total energy = 5548.1962 kcal/mol (5542.6215 without restraints) Performing minimization step: 3018. Total energy = 5546.9844 kcal/mol (5541.4113 without restraints) Performing minimization step: 3019. Total energy = 5545.7739 kcal/mol (5540.2022 without restraints) Performing minimization step: 3020. Total energy = 5544.5649 kcal/mol (5538.9947 without restraints) Performing minimization step: 3021. Total energy = 5543.3565 kcal/mol (5537.7878 without restraints) Performing minimization step: 3022. Total energy = 5542.1493 kcal/mol (5536.5820 without restraints) Performing minimization step: 3023. Total energy = 5540.9432 kcal/mol (5535.3774 without restraints) Performing minimization step: 3024. Total energy = 5539.7388 kcal/mol (5534.1745 without restraints) Performing minimization step: 3025. Total energy = 5538.5355 kcal/mol (5532.9727 without restraints) Performing minimization step: 3026. Total energy = 5537.3331 kcal/mol (5531.7718 without restraints) Performing minimization step: 3027. Total energy = 5536.1321 kcal/mol (5530.5723 without restraints) Performing minimization step: 3028. Total energy = 5534.9324 kcal/mol (5529.3742 without restraints) Performing minimization step: 3029. Total energy = 5533.7341 kcal/mol (5528.1772 without restraints) Performing minimization step: 3030. Total energy = 5532.5365 kcal/mol (5526.9812 without restraints) Performing minimization step: 3031. Total energy = 5531.3405 kcal/mol (5525.7866 without restraints) Performing minimization step: 3032. Total energy = 5530.1453 kcal/mol (5524.5929 without restraints) Performing minimization step: 3033. Total energy = 5528.9514 kcal/mol (5523.4006 without restraints) Performing minimization step: 3034. Total energy = 5527.7592 kcal/mol (5522.2098 without restraints) Performing minimization step: 3035. Total energy = 5526.5680 kcal/mol (5521.0202 without restraints) Performing minimization step: 3036. Total energy = 5525.3778 kcal/mol (5519.8313 without restraints) Performing minimization step: 3037. Total energy = 5524.1886 kcal/mol (5518.6437 without restraints) Performing minimization step: 3038. Total energy = 5523.0003 kcal/mol (5517.4569 without restraints) Performing minimization step: 3039. Total energy = 5521.8136 kcal/mol (5516.2718 without restraints) Performing minimization step: 3040. Total energy = 5520.6286 kcal/mol (5515.0883 without restraints) Performing minimization step: 3041. Total energy = 5519.4445 kcal/mol (5513.9055 without restraints) Performing minimization step: 3042. Total energy = 5518.2615 kcal/mol (5512.7242 without restraints) Performing minimization step: 3043. Total energy = 5517.0796 kcal/mol (5511.5436 without restraints) Performing minimization step: 3044. Total energy = 5515.8989 kcal/mol (5510.3644 without restraints) Performing minimization step: 3045. Total energy = 5514.7192 kcal/mol (5509.1862 without restraints) Performing minimization step: 3046. Total energy = 5513.5403 kcal/mol (5508.0088 without restraints) Performing minimization step: 3047. Total energy = 5512.3629 kcal/mol (5506.8329 without restraints) Performing minimization step: 3048. Total energy = 5511.1868 kcal/mol (5505.6585 without restraints) Performing minimization step: 3049. Total energy = 5510.0120 kcal/mol (5504.4850 without restraints) Performing minimization step: 3050. Total energy = 5508.8380 kcal/mol (5503.3124 without restraints) Performing minimization step: 3051. Total energy = 5507.6660 kcal/mol (5502.1419 without restraints) Performing minimization step: 3052. Total energy = 5506.4943 kcal/mol (5500.9717 without restraints) Performing minimization step: 3053. Total energy = 5505.3241 kcal/mol (5499.8031 without restraints) Performing minimization step: 3054. Total energy = 5504.1551 kcal/mol (5498.6355 without restraints) Performing minimization step: 3055. Total energy = 5502.9866 kcal/mol (5497.4684 without restraints) Performing minimization step: 3056. Total energy = 5501.8196 kcal/mol (5496.3033 without restraints) Performing minimization step: 3057. Total energy = 5500.6543 kcal/mol (5495.1393 without restraints) Performing minimization step: 3058. Total energy = 5499.4895 kcal/mol (5493.9759 without restraints) Performing minimization step: 3059. Total energy = 5498.3263 kcal/mol (5492.8142 without restraints) Performing minimization step: 3060. Total energy = 5497.1639 kcal/mol (5491.6534 without restraints) Performing minimization step: 3061. Total energy = 5496.0031 kcal/mol (5490.4940 without restraints) Performing minimization step: 3062. Total energy = 5494.8431 kcal/mol (5489.3355 without restraints) Performing minimization step: 3063. Total energy = 5493.6839 kcal/mol (5488.1778 without restraints) Performing minimization step: 3064. Total energy = 5492.5260 kcal/mol (5487.0213 without restraints) Performing minimization step: 3065. Total energy = 5491.3692 kcal/mol (5485.8661 without restraints) Performing minimization step: 3066. Total energy = 5490.2139 kcal/mol (5484.7123 without restraints) Performing minimization step: 3067. Total energy = 5489.0594 kcal/mol (5483.5593 without restraints) Performing minimization step: 3068. Total energy = 5487.9061 kcal/mol (5482.4075 without restraints) Performing minimization step: 3069. Total energy = 5486.7544 kcal/mol (5481.2574 without restraints) Performing minimization step: 3070. Total energy = 5485.6033 kcal/mol (5480.1077 without restraints) Performing minimization step: 3071. Total energy = 5484.4530 kcal/mol (5478.9589 without restraints) Performing minimization step: 3072. Total energy = 5483.3042 kcal/mol (5477.8116 without restraints) Performing minimization step: 3073. Total energy = 5482.1570 kcal/mol (5476.6658 without restraints) Performing minimization step: 3074. Total energy = 5481.0110 kcal/mol (5475.5213 without restraints) Performing minimization step: 3075. Total energy = 5479.8657 kcal/mol (5474.3776 without restraints) Performing minimization step: 3076. Total energy = 5478.7214 kcal/mol (5473.2347 without restraints) Performing minimization step: 3077. Total energy = 5477.5784 kcal/mol (5472.0934 without restraints) Performing minimization step: 3078. Total energy = 5476.4364 kcal/mol (5470.9528 without restraints) Performing minimization step: 3079. Total energy = 5475.2954 kcal/mol (5469.8133 without restraints) Performing minimization step: 3080. Total energy = 5474.1556 kcal/mol (5468.6749 without restraints) Performing minimization step: 3081. Total energy = 5473.0170 kcal/mol (5467.5378 without restraints) Performing minimization step: 3082. Total energy = 5471.8793 kcal/mol (5466.4016 without restraints) Performing minimization step: 3083. Total energy = 5470.7426 kcal/mol (5465.2664 without restraints) Performing minimization step: 3084. Total energy = 5469.6071 kcal/mol (5464.1324 without restraints) Performing minimization step: 3085. Total energy = 5468.4729 kcal/mol (5462.9997 without restraints) Performing minimization step: 3086. Total energy = 5467.3395 kcal/mol (5461.8677 without restraints) Performing minimization step: 3087. Total energy = 5466.2077 kcal/mol (5460.7376 without restraints) Performing minimization step: 3088. Total energy = 5465.0767 kcal/mol (5459.6080 without restraints) Performing minimization step: 3089. Total energy = 5463.9467 kcal/mol (5458.4795 without restraints) Performing minimization step: 3090. Total energy = 5462.8178 kcal/mol (5457.3521 without restraints) Performing minimization step: 3091. Total energy = 5461.6900 kcal/mol (5456.2258 without restraints) Performing minimization step: 3092. Total energy = 5460.5634 kcal/mol (5455.1007 without restraints) Performing minimization step: 3093. Total energy = 5459.4379 kcal/mol (5453.9767 without restraints) Performing minimization step: 3094. Total energy = 5458.3133 kcal/mol (5452.8536 without restraints) Performing minimization step: 3095. Total energy = 5457.1897 kcal/mol (5451.7315 without restraints) Performing minimization step: 3096. Total energy = 5456.0670 kcal/mol (5450.6103 without restraints) Performing minimization step: 3097. Total energy = 5454.9460 kcal/mol (5449.4909 without restraints) Performing minimization step: 3098. Total energy = 5453.8257 kcal/mol (5448.3720 without restraints) Performing minimization step: 3099. Total energy = 5452.7065 kcal/mol (5447.2543 without restraints) Performing minimization step: 3100. Total energy = 5451.5877 kcal/mol (5446.1370 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 5450.4706 kcal/mol (5445.0213 without restraints) Performing minimization step: 3102. Total energy = 5449.3545 kcal/mol (5443.9068 without restraints) Performing minimization step: 3103. Total energy = 5448.2392 kcal/mol (5442.7930 without restraints) Performing minimization step: 3104. Total energy = 5447.1251 kcal/mol (5441.6803 without restraints) Performing minimization step: 3105. Total energy = 5446.0122 kcal/mol (5440.5690 without restraints) Performing minimization step: 3106. Total energy = 5444.9006 kcal/mol (5439.4588 without restraints) Performing minimization step: 3107. Total energy = 5443.7898 kcal/mol (5438.3497 without restraints) Performing minimization step: 3108. Total energy = 5442.6802 kcal/mol (5437.2415 without restraints) Performing minimization step: 3109. Total energy = 5441.5713 kcal/mol (5436.1341 without restraints) Performing minimization step: 3110. Total energy = 5440.4640 kcal/mol (5435.0283 without restraints) Performing minimization step: 3111. Total energy = 5439.3575 kcal/mol (5433.9233 without restraints) Performing minimization step: 3112. Total energy = 5438.2524 kcal/mol (5432.8197 without restraints) Performing minimization step: 3113. Total energy = 5437.1480 kcal/mol (5431.7169 without restraints) Performing minimization step: 3114. Total energy = 5436.0448 kcal/mol (5430.6151 without restraints) Performing minimization step: 3115. Total energy = 5434.9425 kcal/mol (5429.5143 without restraints) Performing minimization step: 3116. Total energy = 5433.8411 kcal/mol (5428.4144 without restraints) Performing minimization step: 3117. Total energy = 5432.7409 kcal/mol (5427.3157 without restraints) Performing minimization step: 3118. Total energy = 5431.6420 kcal/mol (5426.2182 without restraints) Performing minimization step: 3119. Total energy = 5430.5442 kcal/mol (5425.1219 without restraints) Performing minimization step: 3120. Total energy = 5429.4470 kcal/mol (5424.0263 without restraints) Performing minimization step: 3121. Total energy = 5428.3508 kcal/mol (5422.9316 without restraints) Performing minimization step: 3122. Total energy = 5427.2556 kcal/mol (5421.8378 without restraints) Performing minimization step: 3123. Total energy = 5426.1614 kcal/mol (5420.7452 without restraints) Performing minimization step: 3124. Total energy = 5425.0687 kcal/mol (5419.6541 without restraints) Performing minimization step: 3125. Total energy = 5423.9773 kcal/mol (5418.5640 without restraints) Performing minimization step: 3126. Total energy = 5422.8861 kcal/mol (5417.4743 without restraints) Performing minimization step: 3127. Total energy = 5421.7957 kcal/mol (5416.3855 without restraints) Performing minimization step: 3128. Total energy = 5420.7068 kcal/mol (5415.2981 without restraints) Performing minimization step: 3129. Total energy = 5419.6189 kcal/mol (5414.2116 without restraints) Performing minimization step: 3130. Total energy = 5418.5318 kcal/mol (5413.1260 without restraints) Performing minimization step: 3131. Total energy = 5417.4457 kcal/mol (5412.0414 without restraints) Performing minimization step: 3132. Total energy = 5416.3608 kcal/mol (5410.9581 without restraints) Performing minimization step: 3133. Total energy = 5415.2768 kcal/mol (5409.8755 without restraints) Performing minimization step: 3134. Total energy = 5414.1943 kcal/mol (5408.7946 without restraints) Performing minimization step: 3135. Total energy = 5413.1128 kcal/mol (5407.7146 without restraints) Performing minimization step: 3136. Total energy = 5412.0320 kcal/mol (5406.6352 without restraints) Performing minimization step: 3137. Total energy = 5410.9520 kcal/mol (5405.5567 without restraints) Performing minimization step: 3138. Total energy = 5409.8731 kcal/mol (5404.4794 without restraints) Performing minimization step: 3139. Total energy = 5408.7953 kcal/mol (5403.4031 without restraints) Performing minimization step: 3140. Total energy = 5407.7182 kcal/mol (5402.3275 without restraints) Performing minimization step: 3141. Total energy = 5406.6421 kcal/mol (5401.2529 without restraints) Performing minimization step: 3142. Total energy = 5405.5676 kcal/mol (5400.1797 without restraints) Performing minimization step: 3143. Total energy = 5404.4933 kcal/mol (5399.1070 without restraints) Performing minimization step: 3144. Total energy = 5403.4200 kcal/mol (5398.0351 without restraints) Performing minimization step: 3145. Total energy = 5402.3482 kcal/mol (5396.9650 without restraints) Performing minimization step: 3146. Total energy = 5401.2772 kcal/mol (5395.8956 without restraints) Performing minimization step: 3147. Total energy = 5400.2073 kcal/mol (5394.8272 without restraints) Performing minimization step: 3148. Total energy = 5399.1384 kcal/mol (5393.7597 without restraints) Performing minimization step: 3149. Total energy = 5398.0704 kcal/mol (5392.6932 without restraints) Performing minimization step: 3150. Total energy = 5397.0031 kcal/mol (5391.6274 without restraints) Performing minimization step: 3151. Total energy = 5395.9368 kcal/mol (5390.5625 without restraints) Performing minimization step: 3152. Total energy = 5394.8717 kcal/mol (5389.4990 without restraints) Performing minimization step: 3153. Total energy = 5393.8075 kcal/mol (5388.4363 without restraints) Performing minimization step: 3154. Total energy = 5392.7441 kcal/mol (5387.3744 without restraints) Performing minimization step: 3155. Total energy = 5391.6819 kcal/mol (5386.3137 without restraints) Performing minimization step: 3156. Total energy = 5390.6205 kcal/mol (5385.2538 without restraints) Performing minimization step: 3157. Total energy = 5389.5602 kcal/mol (5384.1950 without restraints) Performing minimization step: 3158. Total energy = 5388.5005 kcal/mol (5383.1367 without restraints) Performing minimization step: 3159. Total energy = 5387.4422 kcal/mol (5382.0800 without restraints) Performing minimization step: 3160. Total energy = 5386.3848 kcal/mol (5381.0241 without restraints) Performing minimization step: 3161. Total energy = 5385.3281 kcal/mol (5379.9689 without restraints) Performing minimization step: 3162. Total energy = 5384.2725 kcal/mol (5378.9148 without restraints) Performing minimization step: 3163. Total energy = 5383.2181 kcal/mol (5377.8619 without restraints) Performing minimization step: 3164. Total energy = 5382.1647 kcal/mol (5376.8100 without restraints) Performing minimization step: 3165. Total energy = 5381.1119 kcal/mol (5375.7587 without restraints) Performing minimization step: 3166. Total energy = 5380.0600 kcal/mol (5374.7084 without restraints) Performing minimization step: 3167. Total energy = 5379.0091 kcal/mol (5373.6589 without restraints) Performing minimization step: 3168. Total energy = 5377.9590 kcal/mol (5372.6102 without restraints) Performing minimization step: 3169. Total energy = 5376.9097 kcal/mol (5371.5625 without restraints) Performing minimization step: 3170. Total energy = 5375.8615 kcal/mol (5370.5159 without restraints) Performing minimization step: 3171. Total energy = 5374.8147 kcal/mol (5369.4706 without restraints) Performing minimization step: 3172. Total energy = 5373.7685 kcal/mol (5368.4258 without restraints) Performing minimization step: 3173. Total energy = 5372.7232 kcal/mol (5367.3821 without restraints) Performing minimization step: 3174. Total energy = 5371.6791 kcal/mol (5366.3394 without restraints) Performing minimization step: 3175. Total energy = 5370.6360 kcal/mol (5365.2978 without restraints) Performing minimization step: 3176. Total energy = 5369.5936 kcal/mol (5364.2569 without restraints) Performing minimization step: 3177. Total energy = 5368.5520 kcal/mol (5363.2169 without restraints) Performing minimization step: 3178. Total energy = 5367.5123 kcal/mol (5362.1787 without restraints) Performing minimization step: 3179. Total energy = 5366.4724 kcal/mol (5361.1402 without restraints) Performing minimization step: 3180. Total energy = 5365.4336 kcal/mol (5360.1030 without restraints) Performing minimization step: 3181. Total energy = 5364.3957 kcal/mol (5359.0665 without restraints) Performing minimization step: 3182. Total energy = 5363.3588 kcal/mol (5358.0311 without restraints) Performing minimization step: 3183. Total energy = 5362.3225 kcal/mol (5356.9964 without restraints) Performing minimization step: 3184. Total energy = 5361.2877 kcal/mol (5355.9631 without restraints) Performing minimization step: 3185. Total energy = 5360.2535 kcal/mol (5354.9304 without restraints) Performing minimization step: 3186. Total energy = 5359.2205 kcal/mol (5353.8988 without restraints) Performing minimization step: 3187. Total energy = 5358.1881 kcal/mol (5352.8680 without restraints) Performing minimization step: 3188. Total energy = 5357.1569 kcal/mol (5351.8382 without restraints) Performing minimization step: 3189. Total energy = 5356.1263 kcal/mol (5350.8091 without restraints) Performing minimization step: 3190. Total energy = 5355.0969 kcal/mol (5349.7813 without restraints) Performing minimization step: 3191. Total energy = 5354.0681 kcal/mol (5348.7540 without restraints) Performing minimization step: 3192. Total energy = 5353.0409 kcal/mol (5347.7283 without restraints) Performing minimization step: 3193. Total energy = 5352.0139 kcal/mol (5346.7028 without restraints) Performing minimization step: 3194. Total energy = 5350.9878 kcal/mol (5345.6782 without restraints) Performing minimization step: 3195. Total energy = 5349.9627 kcal/mol (5344.6547 without restraints) Performing minimization step: 3196. Total energy = 5348.9387 kcal/mol (5343.6321 without restraints) Performing minimization step: 3197. Total energy = 5347.9153 kcal/mol (5342.6101 without restraints) Performing minimization step: 3198. Total energy = 5346.8939 kcal/mol (5341.5905 without restraints) Performing minimization step: 3199. Total energy = 5345.8722 kcal/mol (5340.5701 without restraints) Performing minimization step: 3200. Total energy = 5344.8514 kcal/mol (5339.5508 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 5343.8320 kcal/mol (5338.5329 without restraints) Performing minimization step: 3202. Total energy = 5342.8134 kcal/mol (5337.5158 without restraints) Performing minimization step: 3203. Total energy = 5341.7957 kcal/mol (5336.4997 without restraints) Performing minimization step: 3204. Total energy = 5340.7785 kcal/mol (5335.4839 without restraints) Performing minimization step: 3205. Total energy = 5339.7619 kcal/mol (5334.4687 without restraints) Performing minimization step: 3206. Total energy = 5338.7465 kcal/mol (5333.4548 without restraints) Performing minimization step: 3207. Total energy = 5337.7319 kcal/mol (5332.4418 without restraints) Performing minimization step: 3208. Total energy = 5336.7179 kcal/mol (5331.4293 without restraints) Performing minimization step: 3209. Total energy = 5335.7046 kcal/mol (5330.4176 without restraints) Performing minimization step: 3210. Total energy = 5334.6934 kcal/mol (5329.4078 without restraints) Performing minimization step: 3211. Total energy = 5333.6825 kcal/mol (5328.3986 without restraints) Performing minimization step: 3212. Total energy = 5332.6731 kcal/mol (5327.3907 without restraints) Performing minimization step: 3213. Total energy = 5331.6638 kcal/mol (5326.3827 without restraints) Performing minimization step: 3214. Total energy = 5330.6560 kcal/mol (5325.3764 without restraints) Performing minimization step: 3215. Total energy = 5329.6483 kcal/mol (5324.3704 without restraints) Performing minimization step: 3216. Total energy = 5328.6417 kcal/mol (5323.3651 without restraints) Performing minimization step: 3217. Total energy = 5327.6359 kcal/mol (5322.3608 without restraints) Performing minimization step: 3218. Total energy = 5326.6307 kcal/mol (5321.3572 without restraints) Performing minimization step: 3219. Total energy = 5325.6262 kcal/mol (5320.3542 without restraints) Performing minimization step: 3220. Total energy = 5324.6231 kcal/mol (5319.3525 without restraints) Performing minimization step: 3221. Total energy = 5323.6205 kcal/mol (5318.3515 without restraints) Performing minimization step: 3222. Total energy = 5322.6191 kcal/mol (5317.3516 without restraints) Performing minimization step: 3223. Total energy = 5321.6183 kcal/mol (5316.3524 without restraints) Performing minimization step: 3224. Total energy = 5320.6186 kcal/mol (5315.3541 without restraints) Performing minimization step: 3225. Total energy = 5319.6195 kcal/mol (5314.3565 without restraints) Performing minimization step: 3226. Total energy = 5318.6214 kcal/mol (5313.3599 without restraints) Performing minimization step: 3227. Total energy = 5317.6239 kcal/mol (5312.3638 without restraints) Performing minimization step: 3228. Total energy = 5316.6272 kcal/mol (5311.3687 without restraints) Performing minimization step: 3229. Total energy = 5315.6318 kcal/mol (5310.3749 without restraints) Performing minimization step: 3230. Total energy = 5314.6369 kcal/mol (5309.3814 without restraints) Performing minimization step: 3231. Total energy = 5313.6429 kcal/mol (5308.3889 without restraints) Performing minimization step: 3232. Total energy = 5312.6497 kcal/mol (5307.3972 without restraints) Performing minimization step: 3233. Total energy = 5311.6573 kcal/mol (5306.4063 without restraints) Performing minimization step: 3234. Total energy = 5310.6660 kcal/mol (5305.4166 without restraints) Performing minimization step: 3235. Total energy = 5309.6753 kcal/mol (5304.4272 without restraints) Performing minimization step: 3236. Total energy = 5308.6858 kcal/mol (5303.4393 without restraints) Performing minimization step: 3237. Total energy = 5307.6967 kcal/mol (5302.4517 without restraints) Performing minimization step: 3238. Total energy = 5306.7088 kcal/mol (5301.4653 without restraints) Performing minimization step: 3239. Total energy = 5305.7214 kcal/mol (5300.4795 without restraints) Performing minimization step: 3240. Total energy = 5304.7349 kcal/mol (5299.4944 without restraints) Performing minimization step: 3241. Total energy = 5303.7491 kcal/mol (5298.5101 without restraints) Performing minimization step: 3242. Total energy = 5302.7638 kcal/mol (5297.5263 without restraints) Performing minimization step: 3243. Total energy = 5301.7794 kcal/mol (5296.5434 without restraints) Performing minimization step: 3244. Total energy = 5300.7960 kcal/mol (5295.5615 without restraints) Performing minimization step: 3245. Total energy = 5299.8137 kcal/mol (5294.5807 without restraints) Performing minimization step: 3246. Total energy = 5298.8319 kcal/mol (5293.6004 without restraints) Performing minimization step: 3247. Total energy = 5297.8517 kcal/mol (5292.6217 without restraints) Performing minimization step: 3248. Total energy = 5296.8714 kcal/mol (5291.6428 without restraints) Performing minimization step: 3249. Total energy = 5295.8920 kcal/mol (5290.6650 without restraints) Performing minimization step: 3250. Total energy = 5294.9136 kcal/mol (5289.6882 without restraints) Performing minimization step: 3251. Total energy = 5293.9362 kcal/mol (5288.7123 without restraints) Performing minimization step: 3252. Total energy = 5292.9594 kcal/mol (5287.7369 without restraints) Performing minimization step: 3253. Total energy = 5291.9836 kcal/mol (5286.7626 without restraints) Performing minimization step: 3254. Total energy = 5291.0079 kcal/mol (5285.7884 without restraints) Performing minimization step: 3255. Total energy = 5290.0332 kcal/mol (5284.8152 without restraints) Performing minimization step: 3256. Total energy = 5289.0595 kcal/mol (5283.8431 without restraints) Performing minimization step: 3257. Total energy = 5288.0869 kcal/mol (5282.8720 without restraints) Performing minimization step: 3258. Total energy = 5287.1148 kcal/mol (5281.9013 without restraints) Performing minimization step: 3259. Total energy = 5286.1436 kcal/mol (5280.9319 without restraints) Performing minimization step: 3260. Total energy = 5285.1734 kcal/mol (5279.9629 without restraints) Performing minimization step: 3261. Total energy = 5284.2044 kcal/mol (5278.9954 without restraints) Performing minimization step: 3262. Total energy = 5283.2355 kcal/mol (5278.0281 without restraints) Performing minimization step: 3263. Total energy = 5282.2676 kcal/mol (5277.0617 without restraints) Performing minimization step: 3264. Total energy = 5281.3005 kcal/mol (5276.0961 without restraints) Performing minimization step: 3265. Total energy = 5280.3340 kcal/mol (5275.1311 without restraints) Performing minimization step: 3266. Total energy = 5279.3683 kcal/mol (5274.1669 without restraints) Performing minimization step: 3267. Total energy = 5278.4037 kcal/mol (5273.2038 without restraints) Performing minimization step: 3268. Total energy = 5277.4400 kcal/mol (5272.2417 without restraints) Performing minimization step: 3269. Total energy = 5276.4771 kcal/mol (5271.2802 without restraints) Performing minimization step: 3270. Total energy = 5275.5145 kcal/mol (5270.3192 without restraints) Performing minimization step: 3271. Total energy = 5274.5528 kcal/mol (5269.3590 without restraints) Performing minimization step: 3272. Total energy = 5273.5919 kcal/mol (5268.3996 without restraints) Performing minimization step: 3273. Total energy = 5272.6318 kcal/mol (5267.4409 without restraints) Performing minimization step: 3274. Total energy = 5271.6725 kcal/mol (5266.4832 without restraints) Performing minimization step: 3275. Total energy = 5270.7138 kcal/mol (5265.5259 without restraints) Performing minimization step: 3276. Total energy = 5269.7559 kcal/mol (5264.5696 without restraints) Performing minimization step: 3277. Total energy = 5268.7993 kcal/mol (5263.6147 without restraints) Performing minimization step: 3278. Total energy = 5267.8436 kcal/mol (5262.6601 without restraints) Performing minimization step: 3279. Total energy = 5266.8877 kcal/mol (5261.7057 without restraints) Performing minimization step: 3280. Total energy = 5265.9332 kcal/mol (5260.7530 without restraints) Performing minimization step: 3281. Total energy = 5264.9801 kcal/mol (5259.8014 without restraints) Performing minimization step: 3282. Total energy = 5264.0270 kcal/mol (5258.8496 without restraints) Performing minimization step: 3283. Total energy = 5263.0744 kcal/mol (5257.8986 without restraints) Performing minimization step: 3284. Total energy = 5262.1227 kcal/mol (5256.9483 without restraints) Performing minimization step: 3285. Total energy = 5261.1719 kcal/mol (5255.9990 without restraints) Performing minimization step: 3286. Total energy = 5260.2216 kcal/mol (5255.0503 without restraints) Performing minimization step: 3287. Total energy = 5259.2722 kcal/mol (5254.1024 without restraints) Performing minimization step: 3288. Total energy = 5258.3236 kcal/mol (5253.1553 without restraints) Performing minimization step: 3289. Total energy = 5257.3761 kcal/mol (5252.2094 without restraints) Performing minimization step: 3290. Total energy = 5256.4296 kcal/mol (5251.2643 without restraints) Performing minimization step: 3291. Total energy = 5255.4833 kcal/mol (5250.3195 without restraints) Performing minimization step: 3292. Total energy = 5254.5375 kcal/mol (5249.3751 without restraints) Performing minimization step: 3293. Total energy = 5253.5924 kcal/mol (5248.4316 without restraints) Performing minimization step: 3294. Total energy = 5252.6484 kcal/mol (5247.4891 without restraints) Performing minimization step: 3295. Total energy = 5251.7048 kcal/mol (5246.5470 without restraints) Performing minimization step: 3296. Total energy = 5250.7620 kcal/mol (5245.6057 without restraints) Performing minimization step: 3297. Total energy = 5249.8205 kcal/mol (5244.6657 without restraints) Performing minimization step: 3298. Total energy = 5248.8795 kcal/mol (5243.7262 without restraints) Performing minimization step: 3299. Total energy = 5247.9391 kcal/mol (5242.7873 without restraints) Performing minimization step: 3300. Total energy = 5246.9994 kcal/mol (5241.8491 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 5246.0608 kcal/mol (5240.9119 without restraints) Performing minimization step: 3302. Total energy = 5245.1225 kcal/mol (5239.9752 without restraints) Performing minimization step: 3303. Total energy = 5244.1853 kcal/mol (5239.0395 without restraints) Performing minimization step: 3304. Total energy = 5243.2486 kcal/mol (5238.1044 without restraints) Performing minimization step: 3305. Total energy = 5242.3126 kcal/mol (5237.1699 without restraints) Performing minimization step: 3306. Total energy = 5241.3773 kcal/mol (5236.2360 without restraints) Performing minimization step: 3307. Total energy = 5240.4427 kcal/mol (5235.3029 without restraints) Performing minimization step: 3308. Total energy = 5239.5089 kcal/mol (5234.3707 without restraints) Performing minimization step: 3309. Total energy = 5238.5762 kcal/mol (5233.4395 without restraints) Performing minimization step: 3310. Total energy = 5237.6438 kcal/mol (5232.5086 without restraints) Performing minimization step: 3311. Total energy = 5236.7126 kcal/mol (5231.5788 without restraints) Performing minimization step: 3312. Total energy = 5235.7817 kcal/mol (5230.6494 without restraints) Performing minimization step: 3313. Total energy = 5234.8514 kcal/mol (5229.7207 without restraints) Performing minimization step: 3314. Total energy = 5233.9218 kcal/mol (5228.7925 without restraints) Performing minimization step: 3315. Total energy = 5232.9933 kcal/mol (5227.8657 without restraints) Performing minimization step: 3316. Total energy = 5232.0654 kcal/mol (5226.9391 without restraints) Performing minimization step: 3317. Total energy = 5231.1380 kcal/mol (5226.0132 without restraints) Performing minimization step: 3318. Total energy = 5230.2122 kcal/mol (5225.0890 without restraints) Performing minimization step: 3319. Total energy = 5229.2864 kcal/mol (5224.1646 without restraints) Performing minimization step: 3320. Total energy = 5228.3614 kcal/mol (5223.2411 without restraints) Performing minimization step: 3321. Total energy = 5227.4376 kcal/mol (5222.3188 without restraints) Performing minimization step: 3322. Total energy = 5226.5141 kcal/mol (5221.3968 without restraints) Performing minimization step: 3323. Total energy = 5225.5916 kcal/mol (5220.4759 without restraints) Performing minimization step: 3324. Total energy = 5224.6693 kcal/mol (5219.5550 without restraints) Performing minimization step: 3325. Total energy = 5223.7473 kcal/mol (5218.6345 without restraints) Performing minimization step: 3326. Total energy = 5222.8261 kcal/mol (5217.7149 without restraints) Performing minimization step: 3327. Total energy = 5221.9064 kcal/mol (5216.7967 without restraints) Performing minimization step: 3328. Total energy = 5220.9870 kcal/mol (5215.8787 without restraints) Performing minimization step: 3329. Total energy = 5220.0683 kcal/mol (5214.9616 without restraints) Performing minimization step: 3330. Total energy = 5219.1503 kcal/mol (5214.0451 without restraints) Performing minimization step: 3331. Total energy = 5218.2331 kcal/mol (5213.1295 without restraints) Performing minimization step: 3332. Total energy = 5217.3166 kcal/mol (5212.2143 without restraints) Performing minimization step: 3333. Total energy = 5216.4007 kcal/mol (5211.3000 without restraints) Performing minimization step: 3334. Total energy = 5215.4855 kcal/mol (5210.3862 without restraints) Performing minimization step: 3335. Total energy = 5214.5708 kcal/mol (5209.4731 without restraints) Performing minimization step: 3336. Total energy = 5213.6573 kcal/mol (5208.5610 without restraints) Performing minimization step: 3337. Total energy = 5212.7442 kcal/mol (5207.6495 without restraints) Performing minimization step: 3338. Total energy = 5211.8318 kcal/mol (5206.7386 without restraints) Performing minimization step: 3339. Total energy = 5210.9205 kcal/mol (5205.8288 without restraints) Performing minimization step: 3340. Total energy = 5210.0095 kcal/mol (5204.9193 without restraints) Performing minimization step: 3341. Total energy = 5209.0995 kcal/mol (5204.0107 without restraints) Performing minimization step: 3342. Total energy = 5208.1899 kcal/mol (5203.1024 without restraints) Performing minimization step: 3343. Total energy = 5207.2809 kcal/mol (5202.1952 without restraints) Performing minimization step: 3344. Total energy = 5206.3728 kcal/mol (5201.2886 without restraints) Performing minimization step: 3345. Total energy = 5205.4654 kcal/mol (5200.3827 without restraints) Performing minimization step: 3346. Total energy = 5204.5584 kcal/mol (5199.4771 without restraints) Performing minimization step: 3347. Total energy = 5203.6517 kcal/mol (5198.5720 without restraints) Performing minimization step: 3348. Total energy = 5202.7459 kcal/mol (5197.6677 without restraints) Performing minimization step: 3349. Total energy = 5201.8411 kcal/mol (5196.7645 without restraints) Performing minimization step: 3350. Total energy = 5200.9371 kcal/mol (5195.8619 without restraints) Performing minimization step: 3351. Total energy = 5200.0340 kcal/mol (5194.9603 without restraints) Performing minimization step: 3352. Total energy = 5199.1315 kcal/mol (5194.0593 without restraints) Performing minimization step: 3353. Total energy = 5198.2295 kcal/mol (5193.1588 without restraints) Performing minimization step: 3354. Total energy = 5197.3280 kcal/mol (5192.2589 without restraints) Performing minimization step: 3355. Total energy = 5196.4271 kcal/mol (5191.3594 without restraints) Performing minimization step: 3356. Total energy = 5195.5271 kcal/mol (5190.4609 without restraints) Performing minimization step: 3357. Total energy = 5194.6283 kcal/mol (5189.5638 without restraints) Performing minimization step: 3358. Total energy = 5193.7298 kcal/mol (5188.6666 without restraints) Performing minimization step: 3359. Total energy = 5192.8320 kcal/mol (5187.7703 without restraints) Performing minimization step: 3360. Total energy = 5191.9346 kcal/mol (5186.8743 without restraints) Performing minimization step: 3361. Total energy = 5191.0380 kcal/mol (5185.9794 without restraints) Performing minimization step: 3362. Total energy = 5190.1424 kcal/mol (5185.0852 without restraints) Performing minimization step: 3363. Total energy = 5189.2474 kcal/mol (5184.1916 without restraints) Performing minimization step: 3364. Total energy = 5188.3528 kcal/mol (5183.2986 without restraints) Performing minimization step: 3365. Total energy = 5187.4588 kcal/mol (5182.4062 without restraints) Performing minimization step: 3366. Total energy = 5186.5658 kcal/mol (5181.5146 without restraints) Performing minimization step: 3367. Total energy = 5185.6735 kcal/mol (5180.6238 without restraints) Performing minimization step: 3368. Total energy = 5184.7815 kcal/mol (5179.7333 without restraints) Performing minimization step: 3369. Total energy = 5183.8905 kcal/mol (5178.8438 without restraints) Performing minimization step: 3370. Total energy = 5182.9998 kcal/mol (5177.9547 without restraints) Performing minimization step: 3371. Total energy = 5182.1103 kcal/mol (5177.0666 without restraints) Performing minimization step: 3372. Total energy = 5181.2209 kcal/mol (5176.1786 without restraints) Performing minimization step: 3373. Total energy = 5180.3323 kcal/mol (5175.2917 without restraints) Performing minimization step: 3374. Total energy = 5179.4445 kcal/mol (5174.4054 without restraints) Performing minimization step: 3375. Total energy = 5178.5574 kcal/mol (5173.5197 without restraints) Performing minimization step: 3376. Total energy = 5177.6708 kcal/mol (5172.6347 without restraints) Performing minimization step: 3377. Total energy = 5176.7849 kcal/mol (5171.7502 without restraints) Performing minimization step: 3378. Total energy = 5175.9000 kcal/mol (5170.8668 without restraints) Performing minimization step: 3379. Total energy = 5175.0153 kcal/mol (5169.9836 without restraints) Performing minimization step: 3380. Total energy = 5174.1312 kcal/mol (5169.1011 without restraints) Performing minimization step: 3381. Total energy = 5173.2483 kcal/mol (5168.2196 without restraints) Performing minimization step: 3382. Total energy = 5172.3656 kcal/mol (5167.3384 without restraints) Performing minimization step: 3383. Total energy = 5171.4839 kcal/mol (5166.4583 without restraints) Performing minimization step: 3384. Total energy = 5170.6024 kcal/mol (5165.5783 without restraints) Performing minimization step: 3385. Total energy = 5169.7220 kcal/mol (5164.6994 without restraints) Performing minimization step: 3386. Total energy = 5168.8424 kcal/mol (5163.8213 without restraints) Performing minimization step: 3387. Total energy = 5167.9635 kcal/mol (5162.9437 without restraints) Performing minimization step: 3388. Total energy = 5167.0845 kcal/mol (5162.0663 without restraints) Performing minimization step: 3389. Total energy = 5166.2061 kcal/mol (5161.1895 without restraints) Performing minimization step: 3390. Total energy = 5165.3292 kcal/mol (5160.3141 without restraints) Performing minimization step: 3391. Total energy = 5164.4524 kcal/mol (5159.4387 without restraints) Performing minimization step: 3392. Total energy = 5163.5765 kcal/mol (5158.5643 without restraints) Performing minimization step: 3393. Total energy = 5162.7013 kcal/mol (5157.6906 without restraints) Performing minimization step: 3394. Total energy = 5161.8263 kcal/mol (5156.8172 without restraints) Performing minimization step: 3395. Total energy = 5160.9522 kcal/mol (5155.9445 without restraints) Performing minimization step: 3396. Total energy = 5160.0785 kcal/mol (5155.0724 without restraints) Performing minimization step: 3397. Total energy = 5159.2055 kcal/mol (5154.2009 without restraints) Performing minimization step: 3398. Total energy = 5158.3334 kcal/mol (5153.3302 without restraints) Performing minimization step: 3399. Total energy = 5157.4616 kcal/mol (5152.4600 without restraints) Performing minimization step: 3400. Total energy = 5156.5905 kcal/mol (5151.5903 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 5155.7204 kcal/mol (5150.7217 without restraints) Performing minimization step: 3402. Total energy = 5154.8505 kcal/mol (5149.8533 without restraints) Performing minimization step: 3403. Total energy = 5153.9813 kcal/mol (5148.9856 without restraints) Performing minimization step: 3404. Total energy = 5153.1132 kcal/mol (5148.1191 without restraints) Performing minimization step: 3405. Total energy = 5152.2459 kcal/mol (5147.2533 without restraints) Performing minimization step: 3406. Total energy = 5151.3788 kcal/mol (5146.3876 without restraints) Performing minimization step: 3407. Total energy = 5150.5121 kcal/mol (5145.5224 without restraints) Performing minimization step: 3408. Total energy = 5149.6461 kcal/mol (5144.6581 without restraints) Performing minimization step: 3409. Total energy = 5148.7810 kcal/mol (5143.7943 without restraints) Performing minimization step: 3410. Total energy = 5147.9166 kcal/mol (5142.9315 without restraints) Performing minimization step: 3411. Total energy = 5147.0523 kcal/mol (5142.0685 without restraints) Performing minimization step: 3412. Total energy = 5146.1884 kcal/mol (5141.2062 without restraints) Performing minimization step: 3413. Total energy = 5145.3259 kcal/mol (5140.3452 without restraints) Performing minimization step: 3414. Total energy = 5144.4635 kcal/mol (5139.4843 without restraints) Performing minimization step: 3415. Total energy = 5143.6024 kcal/mol (5138.6248 without restraints) Performing minimization step: 3416. Total energy = 5142.7414 kcal/mol (5137.7652 without restraints) Performing minimization step: 3417. Total energy = 5141.8810 kcal/mol (5136.9063 without restraints) Performing minimization step: 3418. Total energy = 5141.0209 kcal/mol (5136.0477 without restraints) Performing minimization step: 3419. Total energy = 5140.1616 kcal/mol (5135.1900 without restraints) Performing minimization step: 3420. Total energy = 5139.3030 kcal/mol (5134.3329 without restraints) Performing minimization step: 3421. Total energy = 5138.4449 kcal/mol (5133.4762 without restraints) Performing minimization step: 3422. Total energy = 5137.5883 kcal/mol (5132.6213 without restraints) Performing minimization step: 3423. Total energy = 5136.7318 kcal/mol (5131.7664 without restraints) Performing minimization step: 3424. Total energy = 5135.8762 kcal/mol (5130.9122 without restraints) Performing minimization step: 3425. Total energy = 5135.0209 kcal/mol (5130.0583 without restraints) Performing minimization step: 3426. Total energy = 5134.1660 kcal/mol (5129.2049 without restraints) Performing minimization step: 3427. Total energy = 5133.3119 kcal/mol (5128.3522 without restraints) Performing minimization step: 3428. Total energy = 5132.4582 kcal/mol (5127.5000 without restraints) Performing minimization step: 3429. Total energy = 5131.6051 kcal/mol (5126.6485 without restraints) Performing minimization step: 3430. Total energy = 5130.7527 kcal/mol (5125.7975 without restraints) Performing minimization step: 3431. Total energy = 5129.9006 kcal/mol (5124.9470 without restraints) Performing minimization step: 3432. Total energy = 5129.0497 kcal/mol (5124.0975 without restraints) Performing minimization step: 3433. Total energy = 5128.1989 kcal/mol (5123.2482 without restraints) Performing minimization step: 3434. Total energy = 5127.3486 kcal/mol (5122.3994 without restraints) Performing minimization step: 3435. Total energy = 5126.5001 kcal/mol (5121.5525 without restraints) Performing minimization step: 3436. Total energy = 5125.6514 kcal/mol (5120.7054 without restraints) Performing minimization step: 3437. Total energy = 5124.8035 kcal/mol (5119.8590 without restraints) Performing minimization step: 3438. Total energy = 5123.9560 kcal/mol (5119.0128 without restraints) Performing minimization step: 3439. Total energy = 5123.1087 kcal/mol (5118.1671 without restraints) Performing minimization step: 3440. Total energy = 5122.2625 kcal/mol (5117.3224 without restraints) Performing minimization step: 3441. Total energy = 5121.4170 kcal/mol (5116.4783 without restraints) Performing minimization step: 3442. Total energy = 5120.5718 kcal/mol (5115.6346 without restraints) Performing minimization step: 3443. Total energy = 5119.7272 kcal/mol (5114.7915 without restraints) Performing minimization step: 3444. Total energy = 5118.8831 kcal/mol (5113.9490 without restraints) Performing minimization step: 3445. Total energy = 5118.0398 kcal/mol (5113.1071 without restraints) Performing minimization step: 3446. Total energy = 5117.1972 kcal/mol (5112.2661 without restraints) Performing minimization step: 3447. Total energy = 5116.3550 kcal/mol (5111.4254 without restraints) Performing minimization step: 3448. Total energy = 5115.5135 kcal/mol (5110.5854 without restraints) Performing minimization step: 3449. Total energy = 5114.6726 kcal/mol (5109.7459 without restraints) Performing minimization step: 3450. Total energy = 5113.8324 kcal/mol (5108.9072 without restraints) Performing minimization step: 3451. Total energy = 5112.9931 kcal/mol (5108.0694 without restraints) Performing minimization step: 3452. Total energy = 5112.1543 kcal/mol (5107.2321 without restraints) Performing minimization step: 3453. Total energy = 5111.3161 kcal/mol (5106.3954 without restraints) Performing minimization step: 3454. Total energy = 5110.4783 kcal/mol (5105.5591 without restraints) Performing minimization step: 3455. Total energy = 5109.6411 kcal/mol (5104.7234 without restraints) Performing minimization step: 3456. Total energy = 5108.8045 kcal/mol (5103.8883 without restraints) Performing minimization step: 3457. Total energy = 5107.9682 kcal/mol (5103.0535 without restraints) Performing minimization step: 3458. Total energy = 5107.1325 kcal/mol (5102.2193 without restraints) Performing minimization step: 3459. Total energy = 5106.2973 kcal/mol (5101.3856 without restraints) Performing minimization step: 3460. Total energy = 5105.4628 kcal/mol (5100.5526 without restraints) Performing minimization step: 3461. Total energy = 5104.6294 kcal/mol (5099.7209 without restraints) Performing minimization step: 3462. Total energy = 5103.7967 kcal/mol (5098.8895 without restraints) Performing minimization step: 3463. Total energy = 5102.9639 kcal/mol (5098.0582 without restraints) Performing minimization step: 3464. Total energy = 5102.1318 kcal/mol (5097.2276 without restraints) Performing minimization step: 3465. Total energy = 5101.3002 kcal/mol (5096.3975 without restraints) Performing minimization step: 3466. Total energy = 5100.4691 kcal/mol (5095.5679 without restraints) Performing minimization step: 3467. Total energy = 5099.6395 kcal/mol (5094.7400 without restraints) Performing minimization step: 3468. Total energy = 5098.8098 kcal/mol (5093.9116 without restraints) Performing minimization step: 3469. Total energy = 5097.9807 kcal/mol (5093.0840 without restraints) Performing minimization step: 3470. Total energy = 5097.1522 kcal/mol (5092.2570 without restraints) Performing minimization step: 3471. Total energy = 5096.3241 kcal/mol (5091.4304 without restraints) Performing minimization step: 3472. Total energy = 5095.4966 kcal/mol (5090.6044 without restraints) Performing minimization step: 3473. Total energy = 5094.6696 kcal/mol (5089.7789 without restraints) Performing minimization step: 3474. Total energy = 5093.8436 kcal/mol (5088.9544 without restraints) Performing minimization step: 3475. Total energy = 5093.0180 kcal/mol (5088.1303 without restraints) Performing minimization step: 3476. Total energy = 5092.1929 kcal/mol (5087.3068 without restraints) Performing minimization step: 3477. Total energy = 5091.3685 kcal/mol (5086.4838 without restraints) Performing minimization step: 3478. Total energy = 5090.5445 kcal/mol (5085.6613 without restraints) Performing minimization step: 3479. Total energy = 5089.7210 kcal/mol (5084.8393 without restraints) Performing minimization step: 3480. Total energy = 5088.8982 kcal/mol (5084.0180 without restraints) Performing minimization step: 3481. Total energy = 5088.0759 kcal/mol (5083.1972 without restraints) Performing minimization step: 3482. Total energy = 5087.2545 kcal/mol (5082.3773 without restraints) Performing minimization step: 3483. Total energy = 5086.4334 kcal/mol (5081.5578 without restraints) Performing minimization step: 3484. Total energy = 5085.6133 kcal/mol (5080.7391 without restraints) Performing minimization step: 3485. Total energy = 5084.7933 kcal/mol (5079.9205 without restraints) Performing minimization step: 3486. Total energy = 5083.9740 kcal/mol (5079.1028 without restraints) Performing minimization step: 3487. Total energy = 5083.1553 kcal/mol (5078.2855 without restraints) Performing minimization step: 3488. Total energy = 5082.3371 kcal/mol (5077.4689 without restraints) Performing minimization step: 3489. Total energy = 5081.5193 kcal/mol (5076.6524 without restraints) Performing minimization step: 3490. Total energy = 5080.7024 kcal/mol (5075.8371 without restraints) Performing minimization step: 3491. Total energy = 5079.8859 kcal/mol (5075.0221 without restraints) Performing minimization step: 3492. Total energy = 5079.0695 kcal/mol (5074.2073 without restraints) Performing minimization step: 3493. Total energy = 5078.2542 kcal/mol (5073.3935 without restraints) Performing minimization step: 3494. Total energy = 5077.4392 kcal/mol (5072.5799 without restraints) Performing minimization step: 3495. Total energy = 5076.6250 kcal/mol (5071.7672 without restraints) Performing minimization step: 3496. Total energy = 5075.8110 kcal/mol (5070.9547 without restraints) Performing minimization step: 3497. Total energy = 5074.9978 kcal/mol (5070.1431 without restraints) Performing minimization step: 3498. Total energy = 5074.1852 kcal/mol (5069.3321 without restraints) Performing minimization step: 3499. Total energy = 5073.3739 kcal/mol (5068.5222 without restraints) Performing minimization step: 3500. Total energy = 5072.5624 kcal/mol (5067.7122 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 5071.7516 kcal/mol (5066.9029 without restraints) Performing minimization step: 3502. Total energy = 5070.9419 kcal/mol (5066.0946 without restraints) Performing minimization step: 3503. Total energy = 5070.1326 kcal/mol (5065.2868 without restraints) Performing minimization step: 3504. Total energy = 5069.3233 kcal/mol (5064.4792 without restraints) Performing minimization step: 3505. Total energy = 5068.5146 kcal/mol (5063.6718 without restraints) Performing minimization step: 3506. Total energy = 5067.7067 kcal/mol (5062.8654 without restraints) Performing minimization step: 3507. Total energy = 5066.8996 kcal/mol (5062.0600 without restraints) Performing minimization step: 3508. Total energy = 5066.0937 kcal/mol (5061.2554 without restraints) Performing minimization step: 3509. Total energy = 5065.2873 kcal/mol (5060.4505 without restraints) Performing minimization step: 3510. Total energy = 5064.4814 kcal/mol (5059.6462 without restraints) Performing minimization step: 3511. Total energy = 5063.6765 kcal/mol (5058.8430 without restraints) Performing minimization step: 3512. Total energy = 5062.8724 kcal/mol (5058.0401 without restraints) Performing minimization step: 3513. Total energy = 5062.0682 kcal/mol (5057.2375 without restraints) Performing minimization step: 3514. Total energy = 5061.2646 kcal/mol (5056.4354 without restraints) Performing minimization step: 3515. Total energy = 5060.4618 kcal/mol (5055.6340 without restraints) Performing minimization step: 3516. Total energy = 5059.6590 kcal/mol (5054.8328 without restraints) Performing minimization step: 3517. Total energy = 5058.8570 kcal/mol (5054.0323 without restraints) Performing minimization step: 3518. Total energy = 5058.0554 kcal/mol (5053.2321 without restraints) Performing minimization step: 3519. Total energy = 5057.2552 kcal/mol (5052.4335 without restraints) Performing minimization step: 3520. Total energy = 5056.4550 kcal/mol (5051.6348 without restraints) Performing minimization step: 3521. Total energy = 5055.6551 kcal/mol (5050.8363 without restraints) Performing minimization step: 3522. Total energy = 5054.8553 kcal/mol (5050.0380 without restraints) Performing minimization step: 3523. Total energy = 5054.0566 kcal/mol (5049.2408 without restraints) Performing minimization step: 3524. Total energy = 5053.2583 kcal/mol (5048.4440 without restraints) Performing minimization step: 3525. Total energy = 5052.4608 kcal/mol (5047.6481 without restraints) Performing minimization step: 3526. Total energy = 5051.6641 kcal/mol (5046.8528 without restraints) Performing minimization step: 3527. Total energy = 5050.8674 kcal/mol (5046.0576 without restraints) Performing minimization step: 3528. Total energy = 5050.0718 kcal/mol (5045.2635 without restraints) Performing minimization step: 3529. Total energy = 5049.2763 kcal/mol (5044.4693 without restraints) Performing minimization step: 3530. Total energy = 5048.4812 kcal/mol (5043.6759 without restraints) Performing minimization step: 3531. Total energy = 5047.6870 kcal/mol (5042.8832 without restraints) Performing minimization step: 3532. Total energy = 5046.8929 kcal/mol (5042.0906 without restraints) Performing minimization step: 3533. Total energy = 5046.0998 kcal/mol (5041.2991 without restraints) Performing minimization step: 3534. Total energy = 5045.3074 kcal/mol (5040.5082 without restraints) Performing minimization step: 3535. Total energy = 5044.5152 kcal/mol (5039.7174 without restraints) Performing minimization step: 3536. Total energy = 5043.7233 kcal/mol (5038.9270 without restraints) Performing minimization step: 3537. Total energy = 5042.9321 kcal/mol (5038.1373 without restraints) Performing minimization step: 3538. Total energy = 5042.1415 kcal/mol (5037.3483 without restraints) Performing minimization step: 3539. Total energy = 5041.3512 kcal/mol (5036.5594 without restraints) Performing minimization step: 3540. Total energy = 5040.5615 kcal/mol (5035.7712 without restraints) Performing minimization step: 3541. Total energy = 5039.7725 kcal/mol (5034.9838 without restraints) Performing minimization step: 3542. Total energy = 5038.9840 kcal/mol (5034.1967 without restraints) Performing minimization step: 3543. Total energy = 5038.1960 kcal/mol (5033.4101 without restraints) Performing minimization step: 3544. Total energy = 5037.4086 kcal/mol (5032.6242 without restraints) Performing minimization step: 3545. Total energy = 5036.6217 kcal/mol (5031.8388 without restraints) Performing minimization step: 3546. Total energy = 5035.8354 kcal/mol (5031.0541 without restraints) Performing minimization step: 3547. Total energy = 5035.0497 kcal/mol (5030.2698 without restraints) Performing minimization step: 3548. Total energy = 5034.2641 kcal/mol (5029.4857 without restraints) Performing minimization step: 3549. Total energy = 5033.4791 kcal/mol (5028.7023 without restraints) Performing minimization step: 3550. Total energy = 5032.6950 kcal/mol (5027.9197 without restraints) Performing minimization step: 3551. Total energy = 5031.9113 kcal/mol (5027.1375 without restraints) Performing minimization step: 3552. Total energy = 5031.1280 kcal/mol (5026.3556 without restraints) Performing minimization step: 3553. Total energy = 5030.3454 kcal/mol (5025.5745 without restraints) Performing minimization step: 3554. Total energy = 5029.5627 kcal/mol (5024.7934 without restraints) Performing minimization step: 3555. Total energy = 5028.7813 kcal/mol (5024.0133 without restraints) Performing minimization step: 3556. Total energy = 5028.0000 kcal/mol (5023.2336 without restraints) Performing minimization step: 3557. Total energy = 5027.2193 kcal/mol (5022.4544 without restraints) Performing minimization step: 3558. Total energy = 5026.4394 kcal/mol (5021.6760 without restraints) Performing minimization step: 3559. Total energy = 5025.6597 kcal/mol (5020.8979 without restraints) Performing minimization step: 3560. Total energy = 5024.8806 kcal/mol (5020.1203 without restraints) Performing minimization step: 3561. Total energy = 5024.1022 kcal/mol (5019.3433 without restraints) Performing minimization step: 3562. Total energy = 5023.3241 kcal/mol (5018.5667 without restraints) Performing minimization step: 3563. Total energy = 5022.5467 kcal/mol (5017.7909 without restraints) Performing minimization step: 3564. Total energy = 5021.7704 kcal/mol (5017.0160 without restraints) Performing minimization step: 3565. Total energy = 5020.9939 kcal/mol (5016.2410 without restraints) Performing minimization step: 3566. Total energy = 5020.2183 kcal/mol (5015.4669 without restraints) Performing minimization step: 3567. Total energy = 5019.4428 kcal/mol (5014.6929 without restraints) Performing minimization step: 3568. Total energy = 5018.6681 kcal/mol (5013.9198 without restraints) Performing minimization step: 3569. Total energy = 5017.8947 kcal/mol (5013.1480 without restraints) Performing minimization step: 3570. Total energy = 5017.1210 kcal/mol (5012.3756 without restraints) Performing minimization step: 3571. Total energy = 5016.3472 kcal/mol (5011.6033 without restraints) Performing minimization step: 3572. Total energy = 5015.5743 kcal/mol (5010.8319 without restraints) Performing minimization step: 3573. Total energy = 5014.8019 kcal/mol (5010.0610 without restraints) Performing minimization step: 3574. Total energy = 5014.0302 kcal/mol (5009.2907 without restraints) Performing minimization step: 3575. Total energy = 5013.2588 kcal/mol (5008.5209 without restraints) Performing minimization step: 3576. Total energy = 5012.4878 kcal/mol (5007.7514 without restraints) Performing minimization step: 3577. Total energy = 5011.7182 kcal/mol (5006.9833 without restraints) Performing minimization step: 3578. Total energy = 5010.9485 kcal/mol (5006.2152 without restraints) Performing minimization step: 3579. Total energy = 5010.1795 kcal/mol (5005.4476 without restraints) Performing minimization step: 3580. Total energy = 5009.4109 kcal/mol (5004.6806 without restraints) Performing minimization step: 3581. Total energy = 5008.6422 kcal/mol (5003.9133 without restraints) Performing minimization step: 3582. Total energy = 5007.8750 kcal/mol (5003.1476 without restraints) Performing minimization step: 3583. Total energy = 5007.1079 kcal/mol (5002.3819 without restraints) Performing minimization step: 3584. Total energy = 5006.3409 kcal/mol (5001.6164 without restraints) Performing minimization step: 3585. Total energy = 5005.5747 kcal/mol (5000.8518 without restraints) Performing minimization step: 3586. Total energy = 5004.8096 kcal/mol (5000.0883 without restraints) Performing minimization step: 3587. Total energy = 5004.0446 kcal/mol (4999.3247 without restraints) Performing minimization step: 3588. Total energy = 5003.2800 kcal/mol (4998.5615 without restraints) Performing minimization step: 3589. Total energy = 5002.5163 kcal/mol (4997.7993 without restraints) Performing minimization step: 3590. Total energy = 5001.7526 kcal/mol (4997.0372 without restraints) Performing minimization step: 3591. Total energy = 5000.9896 kcal/mol (4996.2757 without restraints) Performing minimization step: 3592. Total energy = 5000.2269 kcal/mol (4995.5145 without restraints) Performing minimization step: 3593. Total energy = 4999.4656 kcal/mol (4994.7546 without restraints) Performing minimization step: 3594. Total energy = 4998.7041 kcal/mol (4993.9947 without restraints) Performing minimization step: 3595. Total energy = 4997.9428 kcal/mol (4993.2348 without restraints) Performing minimization step: 3596. Total energy = 4997.1822 kcal/mol (4992.4757 without restraints) Performing minimization step: 3597. Total energy = 4996.4221 kcal/mol (4991.7171 without restraints) Performing minimization step: 3598. Total energy = 4995.6629 kcal/mol (4990.9595 without restraints) Performing minimization step: 3599. Total energy = 4994.9038 kcal/mol (4990.2019 without restraints) Performing minimization step: 3600. Total energy = 4994.1459 kcal/mol (4989.4454 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 4993.3879 kcal/mol (4988.6890 without restraints) Performing minimization step: 3602. Total energy = 4992.6308 kcal/mol (4987.9333 without restraints) Performing minimization step: 3603. Total energy = 4991.8738 kcal/mol (4987.1778 without restraints) Performing minimization step: 3604. Total energy = 4991.1175 kcal/mol (4986.4230 without restraints) Performing minimization step: 3605. Total energy = 4990.3613 kcal/mol (4985.6683 without restraints) Performing minimization step: 3606. Total energy = 4989.6057 kcal/mol (4984.9142 without restraints) Performing minimization step: 3607. Total energy = 4988.8506 kcal/mol (4984.1606 without restraints) Performing minimization step: 3608. Total energy = 4988.0961 kcal/mol (4983.4076 without restraints) Performing minimization step: 3609. Total energy = 4987.3427 kcal/mol (4982.6557 without restraints) Performing minimization step: 3610. Total energy = 4986.5892 kcal/mol (4981.9037 without restraints) Performing minimization step: 3611. Total energy = 4985.8367 kcal/mol (4981.1527 without restraints) Performing minimization step: 3612. Total energy = 4985.0841 kcal/mol (4980.4016 without restraints) Performing minimization step: 3613. Total energy = 4984.3320 kcal/mol (4979.6510 without restraints) Performing minimization step: 3614. Total energy = 4983.5805 kcal/mol (4978.9010 without restraints) Performing minimization step: 3615. Total energy = 4982.8296 kcal/mol (4978.1516 without restraints) Performing minimization step: 3616. Total energy = 4982.0794 kcal/mol (4977.4029 without restraints) Performing minimization step: 3617. Total energy = 4981.3296 kcal/mol (4976.6546 without restraints) Performing minimization step: 3618. Total energy = 4980.5806 kcal/mol (4975.9071 without restraints) Performing minimization step: 3619. Total energy = 4979.8316 kcal/mol (4975.1598 without restraints) Performing minimization step: 3620. Total energy = 4979.0832 kcal/mol (4974.4127 without restraints) Performing minimization step: 3621. Total energy = 4978.3350 kcal/mol (4973.6660 without restraints) Performing minimization step: 3622. Total energy = 4977.5876 kcal/mol (4972.9201 without restraints) Performing minimization step: 3623. Total energy = 4976.8405 kcal/mol (4972.1745 without restraints) Performing minimization step: 3624. Total energy = 4976.0938 kcal/mol (4971.4293 without restraints) Performing minimization step: 3625. Total energy = 4975.3479 kcal/mol (4970.6849 without restraints) Performing minimization step: 3626. Total energy = 4974.6024 kcal/mol (4969.9409 without restraints) Performing minimization step: 3627. Total energy = 4973.8575 kcal/mol (4969.1974 without restraints) Performing minimization step: 3628. Total energy = 4973.1128 kcal/mol (4968.4543 without restraints) Performing minimization step: 3629. Total energy = 4972.3685 kcal/mol (4967.7115 without restraints) Performing minimization step: 3630. Total energy = 4971.6249 kcal/mol (4966.9694 without restraints) Performing minimization step: 3631. Total energy = 4970.8815 kcal/mol (4966.2275 without restraints) Performing minimization step: 3632. Total energy = 4970.1385 kcal/mol (4965.4859 without restraints) Performing minimization step: 3633. Total energy = 4969.3964 kcal/mol (4964.7454 without restraints) Performing minimization step: 3634. Total energy = 4968.6547 kcal/mol (4964.0050 without restraints) Performing minimization step: 3635. Total energy = 4967.9133 kcal/mol (4963.2653 without restraints) Performing minimization step: 3636. Total energy = 4967.1725 kcal/mol (4962.5261 without restraints) Performing minimization step: 3637. Total energy = 4966.4326 kcal/mol (4961.7876 without restraints) Performing minimization step: 3638. Total energy = 4965.6930 kcal/mol (4961.0495 without restraints) Performing minimization step: 3639. Total energy = 4964.9537 kcal/mol (4960.3117 without restraints) Performing minimization step: 3640. Total energy = 4964.2153 kcal/mol (4959.5747 without restraints) Performing minimization step: 3641. Total energy = 4963.4772 kcal/mol (4958.8381 without restraints) Performing minimization step: 3642. Total energy = 4962.7396 kcal/mol (4958.1020 without restraints) Performing minimization step: 3643. Total energy = 4962.0027 kcal/mol (4957.3667 without restraints) Performing minimization step: 3644. Total energy = 4961.2663 kcal/mol (4956.6318 without restraints) Performing minimization step: 3645. Total energy = 4960.5301 kcal/mol (4955.8970 without restraints) Performing minimization step: 3646. Total energy = 4959.7951 kcal/mol (4955.1637 without restraints) Performing minimization step: 3647. Total energy = 4959.0601 kcal/mol (4954.4300 without restraints) Performing minimization step: 3648. Total energy = 4958.3256 kcal/mol (4953.6970 without restraints) Performing minimization step: 3649. Total energy = 4957.5910 kcal/mol (4952.9639 without restraints) Performing minimization step: 3650. Total energy = 4956.8569 kcal/mol (4952.2313 without restraints) Performing minimization step: 3651. Total energy = 4956.1237 kcal/mol (4951.4996 without restraints) Performing minimization step: 3652. Total energy = 4955.3906 kcal/mol (4950.7680 without restraints) Performing minimization step: 3653. Total energy = 4954.6588 kcal/mol (4950.0377 without restraints) Performing minimization step: 3654. Total energy = 4953.9268 kcal/mol (4949.3072 without restraints) Performing minimization step: 3655. Total energy = 4953.1956 kcal/mol (4948.5776 without restraints) Performing minimization step: 3656. Total energy = 4952.4646 kcal/mol (4947.8481 without restraints) Performing minimization step: 3657. Total energy = 4951.7341 kcal/mol (4947.1190 without restraints) Performing minimization step: 3658. Total energy = 4951.0042 kcal/mol (4946.3907 without restraints) Performing minimization step: 3659. Total energy = 4950.2748 kcal/mol (4945.6627 without restraints) Performing minimization step: 3660. Total energy = 4949.5453 kcal/mol (4944.9349 without restraints) Performing minimization step: 3661. Total energy = 4948.8173 kcal/mol (4944.2082 without restraints) Performing minimization step: 3662. Total energy = 4948.0893 kcal/mol (4943.4820 without restraints) Performing minimization step: 3663. Total energy = 4947.3619 kcal/mol (4942.7559 without restraints) Performing minimization step: 3664. Total energy = 4946.6348 kcal/mol (4942.0302 without restraints) Performing minimization step: 3665. Total energy = 4945.9087 kcal/mol (4941.3056 without restraints) Performing minimization step: 3666. Total energy = 4945.1828 kcal/mol (4940.5813 without restraints) Performing minimization step: 3667. Total energy = 4944.4570 kcal/mol (4939.8570 without restraints) Performing minimization step: 3668. Total energy = 4943.7318 kcal/mol (4939.1333 without restraints) Performing minimization step: 3669. Total energy = 4943.0071 kcal/mol (4938.4100 without restraints) Performing minimization step: 3670. Total energy = 4942.2827 kcal/mol (4937.6871 without restraints) Performing minimization step: 3671. Total energy = 4941.5590 kcal/mol (4936.9650 without restraints) Performing minimization step: 3672. Total energy = 4940.8362 kcal/mol (4936.2436 without restraints) Performing minimization step: 3673. Total energy = 4940.1130 kcal/mol (4935.5219 without restraints) Performing minimization step: 3674. Total energy = 4939.3905 kcal/mol (4934.8010 without restraints) Performing minimization step: 3675. Total energy = 4938.6687 kcal/mol (4934.0807 without restraints) Performing minimization step: 3676. Total energy = 4937.9478 kcal/mol (4933.3613 without restraints) Performing minimization step: 3677. Total energy = 4937.2273 kcal/mol (4932.6422 without restraints) Performing minimization step: 3678. Total energy = 4936.5067 kcal/mol (4931.9231 without restraints) Performing minimization step: 3679. Total energy = 4935.7865 kcal/mol (4931.2045 without restraints) Performing minimization step: 3680. Total energy = 4935.0671 kcal/mol (4930.4865 without restraints) Performing minimization step: 3681. Total energy = 4934.3480 kcal/mol (4929.7688 without restraints) Performing minimization step: 3682. Total energy = 4933.6294 kcal/mol (4929.0518 without restraints) Performing minimization step: 3683. Total energy = 4932.9113 kcal/mol (4928.3353 without restraints) Performing minimization step: 3684. Total energy = 4932.1938 kcal/mol (4927.6192 without restraints) Performing minimization step: 3685. Total energy = 4931.4768 kcal/mol (4926.9040 without restraints) Performing minimization step: 3686. Total energy = 4930.7603 kcal/mol (4926.1887 without restraints) Performing minimization step: 3687. Total energy = 4930.0444 kcal/mol (4925.4743 without restraints) Performing minimization step: 3688. Total energy = 4929.3286 kcal/mol (4924.7601 without restraints) Performing minimization step: 3689. Total energy = 4928.6131 kcal/mol (4924.0462 without restraints) Performing minimization step: 3690. Total energy = 4927.8986 kcal/mol (4923.3330 without restraints) Performing minimization step: 3691. Total energy = 4927.1845 kcal/mol (4922.6204 without restraints) Performing minimization step: 3692. Total energy = 4926.4705 kcal/mol (4921.9079 without restraints) Performing minimization step: 3693. Total energy = 4925.7570 kcal/mol (4921.1960 without restraints) Performing minimization step: 3694. Total energy = 4925.0442 kcal/mol (4920.4845 without restraints) Performing minimization step: 3695. Total energy = 4924.3320 kcal/mol (4919.7739 without restraints) Performing minimization step: 3696. Total energy = 4923.6199 kcal/mol (4919.0633 without restraints) Performing minimization step: 3697. Total energy = 4922.9082 kcal/mol (4918.3531 without restraints) Performing minimization step: 3698. Total energy = 4922.1972 kcal/mol (4917.6436 without restraints) Performing minimization step: 3699. Total energy = 4921.4864 kcal/mol (4916.9343 without restraints) Performing minimization step: 3700. Total energy = 4920.7764 kcal/mol (4916.2259 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 4920.0671 kcal/mol (4915.5180 without restraints) Performing minimization step: 3702. Total energy = 4919.3577 kcal/mol (4914.8101 without restraints) Performing minimization step: 3703. Total energy = 4918.6489 kcal/mol (4914.1028 without restraints) Performing minimization step: 3704. Total energy = 4917.9406 kcal/mol (4913.3960 without restraints) Performing minimization step: 3705. Total energy = 4917.2327 kcal/mol (4912.6896 without restraints) Performing minimization step: 3706. Total energy = 4916.5250 kcal/mol (4911.9834 without restraints) Performing minimization step: 3707. Total energy = 4915.8181 kcal/mol (4911.2780 without restraints) Performing minimization step: 3708. Total energy = 4915.1117 kcal/mol (4910.5731 without restraints) Performing minimization step: 3709. Total energy = 4914.4056 kcal/mol (4909.8685 without restraints) Performing minimization step: 3710. Total energy = 4913.7007 kcal/mol (4909.1652 without restraints) Performing minimization step: 3711. Total energy = 4912.9954 kcal/mol (4908.4613 without restraints) Performing minimization step: 3712. Total energy = 4912.2909 kcal/mol (4907.7583 without restraints) Performing minimization step: 3713. Total energy = 4911.5871 kcal/mol (4907.0560 without restraints) Performing minimization step: 3714. Total energy = 4910.8835 kcal/mol (4906.3539 without restraints) Performing minimization step: 3715. Total energy = 4910.1799 kcal/mol (4905.6518 without restraints) Performing minimization step: 3716. Total energy = 4909.4771 kcal/mol (4904.9505 without restraints) Performing minimization step: 3717. Total energy = 4908.7752 kcal/mol (4904.2501 without restraints) Performing minimization step: 3718. Total energy = 4908.0732 kcal/mol (4903.5496 without restraints) Performing minimization step: 3719. Total energy = 4907.3718 kcal/mol (4902.8497 without restraints) Performing minimization step: 3720. Total energy = 4906.6712 kcal/mol (4902.1506 without restraints) Performing minimization step: 3721. Total energy = 4905.9709 kcal/mol (4901.4519 without restraints) Performing minimization step: 3722. Total energy = 4905.2710 kcal/mol (4900.7534 without restraints) Performing minimization step: 3723. Total energy = 4904.5712 kcal/mol (4900.0550 without restraints) Performing minimization step: 3724. Total energy = 4903.8721 kcal/mol (4899.3577 without restraints) Performing minimization step: 3725. Total energy = 4903.1735 kcal/mol (4898.6604 without restraints) Performing minimization step: 3726. Total energy = 4902.4755 kcal/mol (4897.9639 without restraints) Performing minimization step: 3727. Total energy = 4901.7780 kcal/mol (4897.2679 without restraints) Performing minimization step: 3728. Total energy = 4901.0809 kcal/mol (4896.5723 without restraints) Performing minimization step: 3729. Total energy = 4900.3843 kcal/mol (4895.8771 without restraints) Performing minimization step: 3730. Total energy = 4899.6877 kcal/mol (4895.1822 without restraints) Performing minimization step: 3731. Total energy = 4898.9917 kcal/mol (4894.4876 without restraints) Performing minimization step: 3732. Total energy = 4898.2961 kcal/mol (4893.7936 without restraints) Performing minimization step: 3733. Total energy = 4897.6016 kcal/mol (4893.1005 without restraints) Performing minimization step: 3734. Total energy = 4896.9069 kcal/mol (4892.4073 without restraints) Performing minimization step: 3735. Total energy = 4896.2130 kcal/mol (4891.7150 without restraints) Performing minimization step: 3736. Total energy = 4895.5199 kcal/mol (4891.0233 without restraints) Performing minimization step: 3737. Total energy = 4894.8266 kcal/mol (4890.3315 without restraints) Performing minimization step: 3738. Total energy = 4894.1337 kcal/mol (4889.6402 without restraints) Performing minimization step: 3739. Total energy = 4893.4411 kcal/mol (4888.9491 without restraints) Performing minimization step: 3740. Total energy = 4892.7493 kcal/mol (4888.2587 without restraints) Performing minimization step: 3741. Total energy = 4892.0581 kcal/mol (4887.5691 without restraints) Performing minimization step: 3742. Total energy = 4891.3666 kcal/mol (4886.8791 without restraints) Performing minimization step: 3743. Total energy = 4890.6762 kcal/mol (4886.1902 without restraints) Performing minimization step: 3744. Total energy = 4889.9862 kcal/mol (4885.5017 without restraints) Performing minimization step: 3745. Total energy = 4889.2967 kcal/mol (4884.8137 without restraints) Performing minimization step: 3746. Total energy = 4888.6076 kcal/mol (4884.1261 without restraints) Performing minimization step: 3747. Total energy = 4887.9188 kcal/mol (4883.4388 without restraints) Performing minimization step: 3748. Total energy = 4887.2309 kcal/mol (4882.7523 without restraints) Performing minimization step: 3749. Total energy = 4886.5429 kcal/mol (4882.0659 without restraints) Performing minimization step: 3750. Total energy = 4885.8558 kcal/mol (4881.3803 without restraints) Performing minimization step: 3751. Total energy = 4885.1688 kcal/mol (4880.6947 without restraints) Performing minimization step: 3752. Total energy = 4884.4825 kcal/mol (4880.0100 without restraints) Performing minimization step: 3753. Total energy = 4883.7964 kcal/mol (4879.3255 without restraints) Performing minimization step: 3754. Total energy = 4883.1106 kcal/mol (4878.6411 without restraints) Performing minimization step: 3755. Total energy = 4882.4254 kcal/mol (4877.9573 without restraints) Performing minimization step: 3756. Total energy = 4881.7408 kcal/mol (4877.2742 without restraints) Performing minimization step: 3757. Total energy = 4881.0566 kcal/mol (4876.5915 without restraints) Performing minimization step: 3758. Total energy = 4880.3730 kcal/mol (4875.9095 without restraints) Performing minimization step: 3759. Total energy = 4879.6898 kcal/mol (4875.2278 without restraints) Performing minimization step: 3760. Total energy = 4879.0066 kcal/mol (4874.5461 without restraints) Performing minimization step: 3761. Total energy = 4878.3240 kcal/mol (4873.8649 without restraints) Performing minimization step: 3762. Total energy = 4877.6418 kcal/mol (4873.1843 without restraints) Performing minimization step: 3763. Total energy = 4876.9605 kcal/mol (4872.5045 without restraints) Performing minimization step: 3764. Total energy = 4876.2793 kcal/mol (4871.8248 without restraints) Performing minimization step: 3765. Total energy = 4875.5988 kcal/mol (4871.1458 without restraints) Performing minimization step: 3766. Total energy = 4874.9184 kcal/mol (4870.4668 without restraints) Performing minimization step: 3767. Total energy = 4874.2387 kcal/mol (4869.7887 without restraints) Performing minimization step: 3768. Total energy = 4873.5591 kcal/mol (4869.1106 without restraints) Performing minimization step: 3769. Total energy = 4872.8799 kcal/mol (4868.4329 without restraints) Performing minimization step: 3770. Total energy = 4872.2013 kcal/mol (4867.7559 without restraints) Performing minimization step: 3771. Total energy = 4871.5230 kcal/mol (4867.0791 without restraints) Performing minimization step: 3772. Total energy = 4870.8455 kcal/mol (4866.4030 without restraints) Performing minimization step: 3773. Total energy = 4870.1684 kcal/mol (4865.7274 without restraints) Performing minimization step: 3774. Total energy = 4869.4918 kcal/mol (4865.0524 without restraints) Performing minimization step: 3775. Total energy = 4868.8156 kcal/mol (4864.3777 without restraints) Performing minimization step: 3776. Total energy = 4868.1398 kcal/mol (4863.7034 without restraints) Performing minimization step: 3777. Total energy = 4867.4645 kcal/mol (4863.0296 without restraints) Performing minimization step: 3778. Total energy = 4866.7895 kcal/mol (4862.3560 without restraints) Performing minimization step: 3779. Total energy = 4866.1150 kcal/mol (4861.6831 without restraints) Performing minimization step: 3780. Total energy = 4865.4410 kcal/mol (4861.0105 without restraints) Performing minimization step: 3781. Total energy = 4864.7670 kcal/mol (4860.3382 without restraints) Performing minimization step: 3782. Total energy = 4864.0939 kcal/mol (4859.6667 without restraints) Performing minimization step: 3783. Total energy = 4863.4215 kcal/mol (4858.9955 without restraints) Performing minimization step: 3784. Total energy = 4862.7490 kcal/mol (4858.3246 without restraints) Performing minimization step: 3785. Total energy = 4862.0770 kcal/mol (4857.6540 without restraints) Performing minimization step: 3786. Total energy = 4861.4056 kcal/mol (4856.9842 without restraints) Performing minimization step: 3787. Total energy = 4860.7348 kcal/mol (4856.3149 without restraints) Performing minimization step: 3788. Total energy = 4860.0644 kcal/mol (4855.6461 without restraints) Performing minimization step: 3789. Total energy = 4859.3943 kcal/mol (4854.9773 without restraints) Performing minimization step: 3790. Total energy = 4858.7244 kcal/mol (4854.3090 without restraints) Performing minimization step: 3791. Total energy = 4858.0550 kcal/mol (4853.6411 without restraints) Performing minimization step: 3792. Total energy = 4857.3863 kcal/mol (4852.9739 without restraints) Performing minimization step: 3793. Total energy = 4856.7180 kcal/mol (4852.3071 without restraints) Performing minimization step: 3794. Total energy = 4856.0501 kcal/mol (4851.6407 without restraints) Performing minimization step: 3795. Total energy = 4855.3824 kcal/mol (4850.9745 without restraints) Performing minimization step: 3796. Total energy = 4854.7156 kcal/mol (4850.3092 without restraints) Performing minimization step: 3797. Total energy = 4854.0494 kcal/mol (4849.6445 without restraints) Performing minimization step: 3798. Total energy = 4853.3831 kcal/mol (4848.9798 without restraints) Performing minimization step: 3799. Total energy = 4852.7174 kcal/mol (4848.3158 without restraints) Performing minimization step: 3800. Total energy = 4852.0520 kcal/mol (4847.6516 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 4851.3869 kcal/mol (4846.9881 without restraints) Performing minimization step: 3802. Total energy = 4850.7228 kcal/mol (4846.3254 without restraints) Performing minimization step: 3803. Total energy = 4850.0587 kcal/mol (4845.6629 without restraints) Performing minimization step: 3804. Total energy = 4849.3949 kcal/mol (4845.0005 without restraints) Performing minimization step: 3805. Total energy = 4848.7320 kcal/mol (4844.3391 without restraints) Performing minimization step: 3806. Total energy = 4848.0692 kcal/mol (4843.6780 without restraints) Performing minimization step: 3807. Total energy = 4847.4073 kcal/mol (4843.0175 without restraints) Performing minimization step: 3808. Total energy = 4846.7453 kcal/mol (4842.3570 without restraints) Performing minimization step: 3809. Total energy = 4846.0837 kcal/mol (4841.6968 without restraints) Performing minimization step: 3810. Total energy = 4845.4226 kcal/mol (4841.0374 without restraints) Performing minimization step: 3811. Total energy = 4844.7622 kcal/mol (4840.3784 without restraints) Performing minimization step: 3812. Total energy = 4844.1020 kcal/mol (4839.7198 without restraints) Performing minimization step: 3813. Total energy = 4843.4425 kcal/mol (4839.0619 without restraints) Performing minimization step: 3814. Total energy = 4842.7831 kcal/mol (4838.4039 without restraints) Performing minimization step: 3815. Total energy = 4842.1244 kcal/mol (4837.7466 without restraints) Performing minimization step: 3816. Total energy = 4841.4658 kcal/mol (4837.0896 without restraints) Performing minimization step: 3817. Total energy = 4840.8079 kcal/mol (4836.4331 without restraints) Performing minimization step: 3818. Total energy = 4840.1503 kcal/mol (4835.7771 without restraints) Performing minimization step: 3819. Total energy = 4839.4932 kcal/mol (4835.1214 without restraints) Performing minimization step: 3820. Total energy = 4838.8371 kcal/mol (4834.4669 without restraints) Performing minimization step: 3821. Total energy = 4838.1809 kcal/mol (4833.8122 without restraints) Performing minimization step: 3822. Total energy = 4837.5249 kcal/mol (4833.1577 without restraints) Performing minimization step: 3823. Total energy = 4836.8694 kcal/mol (4832.5036 without restraints) Performing minimization step: 3824. Total energy = 4836.2143 kcal/mol (4831.8502 without restraints) Performing minimization step: 3825. Total energy = 4835.5601 kcal/mol (4831.1974 without restraints) Performing minimization step: 3826. Total energy = 4834.9056 kcal/mol (4830.5444 without restraints) Performing minimization step: 3827. Total energy = 4834.2517 kcal/mol (4829.8920 without restraints) Performing minimization step: 3828. Total energy = 4833.5984 kcal/mol (4829.2402 without restraints) Performing minimization step: 3829. Total energy = 4832.9456 kcal/mol (4828.5889 without restraints) Performing minimization step: 3830. Total energy = 4832.2931 kcal/mol (4827.9380 without restraints) Performing minimization step: 3831. Total energy = 4831.6407 kcal/mol (4827.2871 without restraints) Performing minimization step: 3832. Total energy = 4830.9890 kcal/mol (4826.6368 without restraints) Performing minimization step: 3833. Total energy = 4830.3380 kcal/mol (4825.9874 without restraints) Performing minimization step: 3834. Total energy = 4829.6871 kcal/mol (4825.3380 without restraints) Performing minimization step: 3835. Total energy = 4829.0366 kcal/mol (4824.6889 without restraints) Performing minimization step: 3836. Total energy = 4828.3864 kcal/mol (4824.0403 without restraints) Performing minimization step: 3837. Total energy = 4827.7372 kcal/mol (4823.3927 without restraints) Performing minimization step: 3838. Total energy = 4827.0881 kcal/mol (4822.7452 without restraints) Performing minimization step: 3839. Total energy = 4826.4397 kcal/mol (4822.0981 without restraints) Performing minimization step: 3840. Total energy = 4825.7918 kcal/mol (4821.4517 without restraints) Performing minimization step: 3841. Total energy = 4825.1439 kcal/mol (4820.8053 without restraints) Performing minimization step: 3842. Total energy = 4824.4965 kcal/mol (4820.1595 without restraints) Performing minimization step: 3843. Total energy = 4823.8494 kcal/mol (4819.5138 without restraints) Performing minimization step: 3844. Total energy = 4823.2027 kcal/mol (4818.8687 without restraints) Performing minimization step: 3845. Total energy = 4822.5569 kcal/mol (4818.2244 without restraints) Performing minimization step: 3846. Total energy = 4821.9112 kcal/mol (4817.5802 without restraints) Performing minimization step: 3847. Total energy = 4821.2659 kcal/mol (4816.9363 without restraints) Performing minimization step: 3848. Total energy = 4820.6211 kcal/mol (4816.2932 without restraints) Performing minimization step: 3849. Total energy = 4819.9769 kcal/mol (4815.6503 without restraints) Performing minimization step: 3850. Total energy = 4819.3327 kcal/mol (4815.0077 without restraints) Performing minimization step: 3851. Total energy = 4818.6892 kcal/mol (4814.3657 without restraints) Performing minimization step: 3852. Total energy = 4818.0459 kcal/mol (4813.7239 without restraints) Performing minimization step: 3853. Total energy = 4817.4030 kcal/mol (4813.0825 without restraints) Performing minimization step: 3854. Total energy = 4816.7610 kcal/mol (4812.4420 without restraints) Performing minimization step: 3855. Total energy = 4816.1193 kcal/mol (4811.8019 without restraints) Performing minimization step: 3856. Total energy = 4815.4782 kcal/mol (4811.1622 without restraints) Performing minimization step: 3857. Total energy = 4814.8366 kcal/mol (4810.5221 without restraints) Performing minimization step: 3858. Total energy = 4814.1958 kcal/mol (4809.8828 without restraints) Performing minimization step: 3859. Total energy = 4813.5557 kcal/mol (4809.2443 without restraints) Performing minimization step: 3860. Total energy = 4812.9163 kcal/mol (4808.6065 without restraints) Performing minimization step: 3861. Total energy = 4812.2772 kcal/mol (4807.9689 without restraints) Performing minimization step: 3862. Total energy = 4811.6384 kcal/mol (4807.3314 without restraints) Performing minimization step: 3863. Total energy = 4811.0006 kcal/mol (4806.6951 without restraints) Performing minimization step: 3864. Total energy = 4810.3623 kcal/mol (4806.0584 without restraints) Performing minimization step: 3865. Total energy = 4809.7246 kcal/mol (4805.4221 without restraints) Performing minimization step: 3866. Total energy = 4809.0871 kcal/mol (4804.7862 without restraints) Performing minimization step: 3867. Total energy = 4808.4501 kcal/mol (4804.1507 without restraints) Performing minimization step: 3868. Total energy = 4807.8136 kcal/mol (4803.5157 without restraints) Performing minimization step: 3869. Total energy = 4807.1773 kcal/mol (4802.8808 without restraints) Performing minimization step: 3870. Total energy = 4806.5418 kcal/mol (4802.2470 without restraints) Performing minimization step: 3871. Total energy = 4805.9063 kcal/mol (4801.6131 without restraints) Performing minimization step: 3872. Total energy = 4805.2715 kcal/mol (4800.9796 without restraints) Performing minimization step: 3873. Total energy = 4804.6369 kcal/mol (4800.3466 without restraints) Performing minimization step: 3874. Total energy = 4804.0031 kcal/mol (4799.7143 without restraints) Performing minimization step: 3875. Total energy = 4803.3697 kcal/mol (4799.0823 without restraints) Performing minimization step: 3876. Total energy = 4802.7367 kcal/mol (4798.4509 without restraints) Performing minimization step: 3877. Total energy = 4802.1038 kcal/mol (4797.8194 without restraints) Performing minimization step: 3878. Total energy = 4801.4715 kcal/mol (4797.1887 without restraints) Performing minimization step: 3879. Total energy = 4800.8395 kcal/mol (4796.5583 without restraints) Performing minimization step: 3880. Total energy = 4800.2076 kcal/mol (4795.9278 without restraints) Performing minimization step: 3881. Total energy = 4799.5765 kcal/mol (4795.2983 without restraints) Performing minimization step: 3882. Total energy = 4798.9458 kcal/mol (4794.6692 without restraints) Performing minimization step: 3883. Total energy = 4798.3156 kcal/mol (4794.0404 without restraints) Performing minimization step: 3884. Total energy = 4797.6857 kcal/mol (4793.4121 without restraints) Performing minimization step: 3885. Total energy = 4797.0564 kcal/mol (4792.7842 without restraints) Performing minimization step: 3886. Total energy = 4796.4272 kcal/mol (4792.1564 without restraints) Performing minimization step: 3887. Total energy = 4795.7984 kcal/mol (4791.5292 without restraints) Performing minimization step: 3888. Total energy = 4795.1701 kcal/mol (4790.9024 without restraints) Performing minimization step: 3889. Total energy = 4794.5424 kcal/mol (4790.2762 without restraints) Performing minimization step: 3890. Total energy = 4793.9146 kcal/mol (4789.6499 without restraints) Performing minimization step: 3891. Total energy = 4793.2878 kcal/mol (4789.0247 without restraints) Performing minimization step: 3892. Total energy = 4792.6612 kcal/mol (4788.3996 without restraints) Performing minimization step: 3893. Total energy = 4792.0349 kcal/mol (4787.7748 without restraints) Performing minimization step: 3894. Total energy = 4791.4090 kcal/mol (4787.1503 without restraints) Performing minimization step: 3895. Total energy = 4790.7841 kcal/mol (4786.5270 without restraints) Performing minimization step: 3896. Total energy = 4790.1597 kcal/mol (4785.9041 without restraints) Performing minimization step: 3897. Total energy = 4789.5350 kcal/mol (4785.2810 without restraints) Performing minimization step: 3898. Total energy = 4788.9107 kcal/mol (4784.6582 without restraints) Performing minimization step: 3899. Total energy = 4788.2865 kcal/mol (4784.0354 without restraints) Performing minimization step: 3900. Total energy = 4787.6630 kcal/mol (4783.4134 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 4787.0398 kcal/mol (4782.7918 without restraints) Performing minimization step: 3902. Total energy = 4786.4172 kcal/mol (4782.1706 without restraints) Performing minimization step: 3903. Total energy = 4785.7951 kcal/mol (4781.5501 without restraints) Performing minimization step: 3904. Total energy = 4785.1731 kcal/mol (4780.9296 without restraints) Performing minimization step: 3905. Total energy = 4784.5516 kcal/mol (4780.3096 without restraints) Performing minimization step: 3906. Total energy = 4783.9304 kcal/mol (4779.6899 without restraints) Performing minimization step: 3907. Total energy = 4783.3098 kcal/mol (4779.0708 without restraints) Performing minimization step: 3908. Total energy = 4782.6893 kcal/mol (4778.4519 without restraints) Performing minimization step: 3909. Total energy = 4782.0701 kcal/mol (4777.8342 without restraints) Performing minimization step: 3910. Total energy = 4781.4512 kcal/mol (4777.2167 without restraints) Performing minimization step: 3911. Total energy = 4780.8322 kcal/mol (4776.5993 without restraints) Performing minimization step: 3912. Total energy = 4780.2138 kcal/mol (4775.9824 without restraints) Performing minimization step: 3913. Total energy = 4779.5956 kcal/mol (4775.3657 without restraints) Performing minimization step: 3914. Total energy = 4778.9780 kcal/mol (4774.7496 without restraints) Performing minimization step: 3915. Total energy = 4778.3606 kcal/mol (4774.1338 without restraints) Performing minimization step: 3916. Total energy = 4777.7442 kcal/mol (4773.5189 without restraints) Performing minimization step: 3917. Total energy = 4777.1281 kcal/mol (4772.9042 without restraints) Performing minimization step: 3918. Total energy = 4776.5119 kcal/mol (4772.2896 without restraints) Performing minimization step: 3919. Total energy = 4775.8961 kcal/mol (4771.6753 without restraints) Performing minimization step: 3920. Total energy = 4775.2810 kcal/mol (4771.0616 without restraints) Performing minimization step: 3921. Total energy = 4774.6662 kcal/mol (4770.4484 without restraints) Performing minimization step: 3922. Total energy = 4774.0518 kcal/mol (4769.8355 without restraints) Performing minimization step: 3923. Total energy = 4773.4375 kcal/mol (4769.2227 without restraints) Performing minimization step: 3924. Total energy = 4772.8241 kcal/mol (4768.6108 without restraints) Performing minimization step: 3925. Total energy = 4772.2107 kcal/mol (4767.9989 without restraints) Performing minimization step: 3926. Total energy = 4771.5977 kcal/mol (4767.3874 without restraints) Performing minimization step: 3927. Total energy = 4770.9851 kcal/mol (4766.7764 without restraints) Performing minimization step: 3928. Total energy = 4770.3732 kcal/mol (4766.1660 without restraints) Performing minimization step: 3929. Total energy = 4769.7613 kcal/mol (4765.5555 without restraints) Performing minimization step: 3930. Total energy = 4769.1503 kcal/mol (4764.9461 without restraints) Performing minimization step: 3931. Total energy = 4768.5397 kcal/mol (4764.3370 without restraints) Performing minimization step: 3932. Total energy = 4767.9293 kcal/mol (4763.7282 without restraints) Performing minimization step: 3933. Total energy = 4767.3192 kcal/mol (4763.1195 without restraints) Performing minimization step: 3934. Total energy = 4766.7095 kcal/mol (4762.5113 without restraints) Performing minimization step: 3935. Total energy = 4766.1008 kcal/mol (4761.9044 without restraints) Performing minimization step: 3936. Total energy = 4765.4921 kcal/mol (4761.2970 without restraints) Performing minimization step: 3937. Total energy = 4764.8837 kcal/mol (4760.6901 without restraints) Performing minimization step: 3938. Total energy = 4764.2753 kcal/mol (4760.0832 without restraints) Performing minimization step: 3939. Total energy = 4763.6676 kcal/mol (4759.4770 without restraints) Performing minimization step: 3940. Total energy = 4763.0605 kcal/mol (4758.8714 without restraints) Performing minimization step: 3941. Total energy = 4762.4536 kcal/mol (4758.2660 without restraints) Performing minimization step: 3942. Total energy = 4761.8470 kcal/mol (4757.6610 without restraints) Performing minimization step: 3943. Total energy = 4761.2412 kcal/mol (4757.0567 without restraints) Performing minimization step: 3944. Total energy = 4760.6357 kcal/mol (4756.4527 without restraints) Performing minimization step: 3945. Total energy = 4760.0303 kcal/mol (4755.8488 without restraints) Performing minimization step: 3946. Total energy = 4759.4253 kcal/mol (4755.2453 without restraints) Performing minimization step: 3947. Total energy = 4758.8205 kcal/mol (4754.6421 without restraints) Performing minimization step: 3948. Total energy = 4758.2166 kcal/mol (4754.0397 without restraints) Performing minimization step: 3949. Total energy = 4757.6132 kcal/mol (4753.4379 without restraints) Performing minimization step: 3950. Total energy = 4757.0101 kcal/mol (4752.8362 without restraints) Performing minimization step: 3951. Total energy = 4756.4075 kcal/mol (4752.2352 without restraints) Performing minimization step: 3952. Total energy = 4755.8050 kcal/mol (4751.6341 without restraints) Performing minimization step: 3953. Total energy = 4755.2024 kcal/mol (4751.0331 without restraints) Performing minimization step: 3954. Total energy = 4754.6008 kcal/mol (4750.4329 without restraints) Performing minimization step: 3955. Total energy = 4753.9995 kcal/mol (4749.8333 without restraints) Performing minimization step: 3956. Total energy = 4753.3986 kcal/mol (4749.2338 without restraints) Performing minimization step: 3957. Total energy = 4752.7979 kcal/mol (4748.6346 without restraints) Performing minimization step: 3958. Total energy = 4752.1977 kcal/mol (4748.0359 without restraints) Performing minimization step: 3959. Total energy = 4751.5983 kcal/mol (4747.4380 without restraints) Performing minimization step: 3960. Total energy = 4750.9991 kcal/mol (4746.8404 without restraints) Performing minimization step: 3961. Total energy = 4750.4005 kcal/mol (4746.2433 without restraints) Performing minimization step: 3962. Total energy = 4749.8016 kcal/mol (4745.6457 without restraints) Performing minimization step: 3963. Total energy = 4749.2036 kcal/mol (4745.0493 without restraints) Performing minimization step: 3964. Total energy = 4748.6063 kcal/mol (4744.4537 without restraints) Performing minimization step: 3965. Total energy = 4748.0089 kcal/mol (4743.8577 without restraints) Performing minimization step: 3966. Total energy = 4747.4122 kcal/mol (4743.2626 without restraints) Performing minimization step: 3967. Total energy = 4746.8154 kcal/mol (4742.6673 without restraints) Performing minimization step: 3968. Total energy = 4746.2192 kcal/mol (4742.0725 without restraints) Performing minimization step: 3969. Total energy = 4745.6234 kcal/mol (4741.4783 without restraints) Performing minimization step: 3970. Total energy = 4745.0280 kcal/mol (4740.8845 without restraints) Performing minimization step: 3971. Total energy = 4744.4332 kcal/mol (4740.2912 without restraints) Performing minimization step: 3972. Total energy = 4743.8387 kcal/mol (4739.6981 without restraints) Performing minimization step: 3973. Total energy = 4743.2447 kcal/mol (4739.1057 without restraints) Performing minimization step: 3974. Total energy = 4742.6510 kcal/mol (4738.5135 without restraints) Performing minimization step: 3975. Total energy = 4742.0583 kcal/mol (4737.9224 without restraints) Performing minimization step: 3976. Total energy = 4741.4654 kcal/mol (4737.3311 without restraints) Performing minimization step: 3977. Total energy = 4740.8731 kcal/mol (4736.7401 without restraints) Performing minimization step: 3978. Total energy = 4740.2802 kcal/mol (4736.1487 without restraints) Performing minimization step: 3979. Total energy = 4739.6882 kcal/mol (4735.5581 without restraints) Performing minimization step: 3980. Total energy = 4739.0964 kcal/mol (4734.9680 without restraints) Performing minimization step: 3981. Total energy = 4738.5053 kcal/mol (4734.3784 without restraints) Performing minimization step: 3982. Total energy = 4737.9152 kcal/mol (4733.7898 without restraints) Performing minimization step: 3983. Total energy = 4737.3249 kcal/mol (4733.2010 without restraints) Performing minimization step: 3984. Total energy = 4736.7348 kcal/mol (4732.6124 without restraints) Performing minimization step: 3985. Total energy = 4736.1453 kcal/mol (4732.0245 without restraints) Performing minimization step: 3986. Total energy = 4735.5560 kcal/mol (4731.4366 without restraints) Performing minimization step: 3987. Total energy = 4734.9672 kcal/mol (4730.8494 without restraints) Performing minimization step: 3988. Total energy = 4734.3792 kcal/mol (4730.2630 without restraints) Performing minimization step: 3989. Total energy = 4733.7916 kcal/mol (4729.6768 without restraints) Performing minimization step: 3990. Total energy = 4733.2038 kcal/mol (4729.0903 without restraints) Performing minimization step: 3991. Total energy = 4732.6168 kcal/mol (4728.5050 without restraints) Performing minimization step: 3992. Total energy = 4732.0300 kcal/mol (4727.9198 without restraints) Performing minimization step: 3993. Total energy = 4731.4439 kcal/mol (4727.3351 without restraints) Performing minimization step: 3994. Total energy = 4730.8578 kcal/mol (4726.7506 without restraints) Performing minimization step: 3995. Total energy = 4730.2726 kcal/mol (4726.1670 without restraints) Performing minimization step: 3996. Total energy = 4729.6873 kcal/mol (4725.5832 without restraints) Performing minimization step: 3997. Total energy = 4729.1026 kcal/mol (4724.9999 without restraints) Performing minimization step: 3998. Total energy = 4728.5181 kcal/mol (4724.4169 without restraints) Performing minimization step: 3999. Total energy = 4727.9339 kcal/mol (4723.8344 without restraints) Performing minimization step: 4000. Total energy = 4727.3502 kcal/mol (4723.2522 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 4726.7666 kcal/mol (4722.6700 without restraints) Performing minimization step: 4002. Total energy = 4726.1836 kcal/mol (4722.0886 without restraints) Performing minimization step: 4003. Total energy = 4725.6011 kcal/mol (4721.5075 without restraints) Performing minimization step: 4004. Total energy = 4725.0187 kcal/mol (4720.9267 without restraints) Performing minimization step: 4005. Total energy = 4724.4370 kcal/mol (4720.3466 without restraints) Performing minimization step: 4006. Total energy = 4723.8555 kcal/mol (4719.7665 without restraints) Performing minimization step: 4007. Total energy = 4723.2744 kcal/mol (4719.1870 without restraints) Performing minimization step: 4008. Total energy = 4722.6938 kcal/mol (4718.6077 without restraints) Performing minimization step: 4009. Total energy = 4722.1134 kcal/mol (4718.0290 without restraints) Performing minimization step: 4010. Total energy = 4721.5334 kcal/mol (4717.4506 without restraints) Performing minimization step: 4011. Total energy = 4720.9543 kcal/mol (4716.8728 without restraints) Performing minimization step: 4012. Total energy = 4720.3750 kcal/mol (4716.2952 without restraints) Performing minimization step: 4013. Total energy = 4719.7962 kcal/mol (4715.7178 without restraints) Performing minimization step: 4014. Total energy = 4719.2176 kcal/mol (4715.1407 without restraints) Performing minimization step: 4015. Total energy = 4718.6401 kcal/mol (4714.5648 without restraints) Performing minimization step: 4016. Total energy = 4718.0627 kcal/mol (4713.9889 without restraints) Performing minimization step: 4017. Total energy = 4717.4856 kcal/mol (4713.4134 without restraints) Performing minimization step: 4018. Total energy = 4716.9085 kcal/mol (4712.8376 without restraints) Performing minimization step: 4019. Total energy = 4716.3318 kcal/mol (4712.2625 without restraints) Performing minimization step: 4020. Total energy = 4715.7555 kcal/mol (4711.6877 without restraints) Performing minimization step: 4021. Total energy = 4715.1796 kcal/mol (4711.1133 without restraints) Performing minimization step: 4022. Total energy = 4714.6040 kcal/mol (4710.5392 without restraints) Performing minimization step: 4023. Total energy = 4714.0287 kcal/mol (4709.9655 without restraints) Performing minimization step: 4024. Total energy = 4713.4550 kcal/mol (4709.3935 without restraints) Performing minimization step: 4025. Total energy = 4712.8814 kcal/mol (4708.8212 without restraints) Performing minimization step: 4026. Total energy = 4712.3077 kcal/mol (4708.2492 without restraints) Performing minimization step: 4027. Total energy = 4711.7342 kcal/mol (4707.6771 without restraints) Performing minimization step: 4028. Total energy = 4711.1612 kcal/mol (4707.1055 without restraints) Performing minimization step: 4029. Total energy = 4710.5884 kcal/mol (4706.5346 without restraints) Performing minimization step: 4030. Total energy = 4710.0163 kcal/mol (4705.9638 without restraints) Performing minimization step: 4031. Total energy = 4709.4443 kcal/mol (4705.3932 without restraints) Performing minimization step: 4032. Total energy = 4708.8725 kcal/mol (4704.8230 without restraints) Performing minimization step: 4033. Total energy = 4708.3012 kcal/mol (4704.2532 without restraints) Performing minimization step: 4034. Total energy = 4707.7307 kcal/mol (4703.6842 without restraints) Performing minimization step: 4035. Total energy = 4707.1603 kcal/mol (4703.1153 without restraints) Performing minimization step: 4036. Total energy = 4706.5902 kcal/mol (4702.5468 without restraints) Performing minimization step: 4037. Total energy = 4706.0205 kcal/mol (4701.9787 without restraints) Performing minimization step: 4038. Total energy = 4705.4511 kcal/mol (4701.4107 without restraints) Performing minimization step: 4039. Total energy = 4704.8826 kcal/mol (4700.8437 without restraints) Performing minimization step: 4040. Total energy = 4704.3138 kcal/mol (4700.2764 without restraints) Performing minimization step: 4041. Total energy = 4703.7458 kcal/mol (4699.7099 without restraints) Performing minimization step: 4042. Total energy = 4703.1782 kcal/mol (4699.1439 without restraints) Performing minimization step: 4043. Total energy = 4702.6106 kcal/mol (4698.5777 without restraints) Performing minimization step: 4044. Total energy = 4702.0435 kcal/mol (4698.0121 without restraints) Performing minimization step: 4045. Total energy = 4701.4770 kcal/mol (4697.4474 without restraints) Performing minimization step: 4046. Total energy = 4700.9107 kcal/mol (4696.8824 without restraints) Performing minimization step: 4047. Total energy = 4700.3443 kcal/mol (4696.3176 without restraints) Performing minimization step: 4048. Total energy = 4699.7785 kcal/mol (4695.7534 without restraints) Performing minimization step: 4049. Total energy = 4699.2135 kcal/mol (4695.1897 without restraints) Performing minimization step: 4050. Total energy = 4698.6484 kcal/mol (4694.6262 without restraints) Performing minimization step: 4051. Total energy = 4698.0836 kcal/mol (4694.0629 without restraints) Performing minimization step: 4052. Total energy = 4697.5197 kcal/mol (4693.5006 without restraints) Performing minimization step: 4053. Total energy = 4696.9563 kcal/mol (4692.9388 without restraints) Performing minimization step: 4054. Total energy = 4696.3933 kcal/mol (4692.3773 without restraints) Performing minimization step: 4055. Total energy = 4695.8303 kcal/mol (4691.8156 without restraints) Performing minimization step: 4056. Total energy = 4695.2675 kcal/mol (4691.2544 without restraints) Performing minimization step: 4057. Total energy = 4694.7055 kcal/mol (4690.6940 without restraints) Performing minimization step: 4058. Total energy = 4694.1435 kcal/mol (4690.1335 without restraints) Performing minimization step: 4059. Total energy = 4693.5822 kcal/mol (4689.5735 without restraints) Performing minimization step: 4060. Total energy = 4693.0211 kcal/mol (4689.0141 without restraints) Performing minimization step: 4061. Total energy = 4692.4609 kcal/mol (4688.4554 without restraints) Performing minimization step: 4062. Total energy = 4691.9004 kcal/mol (4687.8964 without restraints) Performing minimization step: 4063. Total energy = 4691.3405 kcal/mol (4687.3381 without restraints) Performing minimization step: 4064. Total energy = 4690.7808 kcal/mol (4686.7800 without restraints) Performing minimization step: 4065. Total energy = 4690.2217 kcal/mol (4686.2223 without restraints) Performing minimization step: 4066. Total energy = 4689.6627 kcal/mol (4685.6648 without restraints) Performing minimization step: 4067. Total energy = 4689.1041 kcal/mol (4685.1077 without restraints) Performing minimization step: 4068. Total energy = 4688.5457 kcal/mol (4684.5510 without restraints) Performing minimization step: 4069. Total energy = 4687.9879 kcal/mol (4683.9945 without restraints) Performing minimization step: 4070. Total energy = 4687.4302 kcal/mol (4683.4384 without restraints) Performing minimization step: 4071. Total energy = 4686.8730 kcal/mol (4682.8827 without restraints) Performing minimization step: 4072. Total energy = 4686.3163 kcal/mol (4682.3275 without restraints) Performing minimization step: 4073. Total energy = 4685.7598 kcal/mol (4681.7726 without restraints) Performing minimization step: 4074. Total energy = 4685.2033 kcal/mol (4681.2176 without restraints) Performing minimization step: 4075. Total energy = 4684.6477 kcal/mol (4680.6634 without restraints) Performing minimization step: 4076. Total energy = 4684.0926 kcal/mol (4680.1099 without restraints) Performing minimization step: 4077. Total energy = 4683.5378 kcal/mol (4679.5567 without restraints) Performing minimization step: 4078. Total energy = 4682.9833 kcal/mol (4679.0038 without restraints) Performing minimization step: 4079. Total energy = 4682.4293 kcal/mol (4678.4511 without restraints) Performing minimization step: 4080. Total energy = 4681.8761 kcal/mol (4677.8996 without restraints) Performing minimization step: 4081. Total energy = 4681.3228 kcal/mol (4677.3479 without restraints) Performing minimization step: 4082. Total energy = 4680.7698 kcal/mol (4676.7962 without restraints) Performing minimization step: 4083. Total energy = 4680.2171 kcal/mol (4676.2450 without restraints) Performing minimization step: 4084. Total energy = 4679.6648 kcal/mol (4675.6943 without restraints) Performing minimization step: 4085. Total energy = 4679.1130 kcal/mol (4675.1440 without restraints) Performing minimization step: 4086. Total energy = 4678.5615 kcal/mol (4674.5941 without restraints) Performing minimization step: 4087. Total energy = 4678.0103 kcal/mol (4674.0443 without restraints) Performing minimization step: 4088. Total energy = 4677.4593 kcal/mol (4673.4948 without restraints) Performing minimization step: 4089. Total energy = 4676.9086 kcal/mol (4672.9456 without restraints) Performing minimization step: 4090. Total energy = 4676.3581 kcal/mol (4672.3966 without restraints) Performing minimization step: 4091. Total energy = 4675.8081 kcal/mol (4671.8482 without restraints) Performing minimization step: 4092. Total energy = 4675.2588 kcal/mol (4671.3004 without restraints) Performing minimization step: 4093. Total energy = 4674.7103 kcal/mol (4670.7534 without restraints) Performing minimization step: 4094. Total energy = 4674.1616 kcal/mol (4670.2063 without restraints) Performing minimization step: 4095. Total energy = 4673.6133 kcal/mol (4669.6597 without restraints) Performing minimization step: 4096. Total energy = 4673.0655 kcal/mol (4669.1132 without restraints) Performing minimization step: 4097. Total energy = 4672.5183 kcal/mol (4668.5676 without restraints) Performing minimization step: 4098. Total energy = 4671.9709 kcal/mol (4668.0216 without restraints) Performing minimization step: 4099. Total energy = 4671.4239 kcal/mol (4667.4762 without restraints) Performing minimization step: 4100. Total energy = 4670.8772 kcal/mol (4666.9310 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 4670.3306 kcal/mol (4666.3859 without restraints) Performing minimization step: 4102. Total energy = 4669.7847 kcal/mol (4665.8415 without restraints) Performing minimization step: 4103. Total energy = 4669.2394 kcal/mol (4665.2978 without restraints) Performing minimization step: 4104. Total energy = 4668.6948 kcal/mol (4664.7546 without restraints) Performing minimization step: 4105. Total energy = 4668.1502 kcal/mol (4664.2116 without restraints) Performing minimization step: 4106. Total energy = 4667.6060 kcal/mol (4663.6688 without restraints) Performing minimization step: 4107. Total energy = 4667.0618 kcal/mol (4663.1261 without restraints) Performing minimization step: 4108. Total energy = 4666.5179 kcal/mol (4662.5839 without restraints) Performing minimization step: 4109. Total energy = 4665.9744 kcal/mol (4662.0418 without restraints) Performing minimization step: 4110. Total energy = 4665.4316 kcal/mol (4661.5006 without restraints) Performing minimization step: 4111. Total energy = 4664.8889 kcal/mol (4660.9593 without restraints) Performing minimization step: 4112. Total energy = 4664.3462 kcal/mol (4660.4182 without restraints) Performing minimization step: 4113. Total energy = 4663.8042 kcal/mol (4659.8777 without restraints) Performing minimization step: 4114. Total energy = 4663.2625 kcal/mol (4659.3375 without restraints) Performing minimization step: 4115. Total energy = 4662.7217 kcal/mol (4658.7983 without restraints) Performing minimization step: 4116. Total energy = 4662.1809 kcal/mol (4658.2591 without restraints) Performing minimization step: 4117. Total energy = 4661.6404 kcal/mol (4657.7200 without restraints) Performing minimization step: 4118. Total energy = 4661.1005 kcal/mol (4657.1816 without restraints) Performing minimization step: 4119. Total energy = 4660.5608 kcal/mol (4656.6435 without restraints) Performing minimization step: 4120. Total energy = 4660.0216 kcal/mol (4656.1059 without restraints) Performing minimization step: 4121. Total energy = 4659.4827 kcal/mol (4655.5684 without restraints) Performing minimization step: 4122. Total energy = 4658.9439 kcal/mol (4655.0311 without restraints) Performing minimization step: 4123. Total energy = 4658.4056 kcal/mol (4654.4943 without restraints) Performing minimization step: 4124. Total energy = 4657.8675 kcal/mol (4653.9577 without restraints) Performing minimization step: 4125. Total energy = 4657.3298 kcal/mol (4653.4215 without restraints) Performing minimization step: 4126. Total energy = 4656.7924 kcal/mol (4652.8856 without restraints) Performing minimization step: 4127. Total energy = 4656.2556 kcal/mol (4652.3504 without restraints) Performing minimization step: 4128. Total energy = 4655.7188 kcal/mol (4651.8152 without restraints) Performing minimization step: 4129. Total energy = 4655.1831 kcal/mol (4651.2809 without restraints) Performing minimization step: 4130. Total energy = 4654.6474 kcal/mol (4650.7468 without restraints) Performing minimization step: 4131. Total energy = 4654.1120 kcal/mol (4650.2128 without restraints) Performing minimization step: 4132. Total energy = 4653.5767 kcal/mol (4649.6791 without restraints) Performing minimization step: 4133. Total energy = 4653.0422 kcal/mol (4649.1461 without restraints) Performing minimization step: 4134. Total energy = 4652.5077 kcal/mol (4648.6131 without restraints) Performing minimization step: 4135. Total energy = 4651.9735 kcal/mol (4648.0804 without restraints) Performing minimization step: 4136. Total energy = 4651.4403 kcal/mol (4647.5488 without restraints) Performing minimization step: 4137. Total energy = 4650.9068 kcal/mol (4647.0168 without restraints) Performing minimization step: 4138. Total energy = 4650.3733 kcal/mol (4646.4848 without restraints) Performing minimization step: 4139. Total energy = 4649.8409 kcal/mol (4645.9539 without restraints) Performing minimization step: 4140. Total energy = 4649.3084 kcal/mol (4645.4230 without restraints) Performing minimization step: 4141. Total energy = 4648.7768 kcal/mol (4644.8928 without restraints) Performing minimization step: 4142. Total energy = 4648.2452 kcal/mol (4644.3628 without restraints) Performing minimization step: 4143. Total energy = 4647.7141 kcal/mol (4643.8332 without restraints) Performing minimization step: 4144. Total energy = 4647.1834 kcal/mol (4643.3041 without restraints) Performing minimization step: 4145. Total energy = 4646.6530 kcal/mol (4642.7753 without restraints) Performing minimization step: 4146. Total energy = 4646.1228 kcal/mol (4642.2464 without restraints) Performing minimization step: 4147. Total energy = 4645.5932 kcal/mol (4641.7184 without restraints) Performing minimization step: 4148. Total energy = 4645.0639 kcal/mol (4641.1906 without restraints) Performing minimization step: 4149. Total energy = 4644.5349 kcal/mol (4640.6631 without restraints) Performing minimization step: 4150. Total energy = 4644.0060 kcal/mol (4640.1357 without restraints) Performing minimization step: 4151. Total energy = 4643.4777 kcal/mol (4639.6090 without restraints) Performing minimization step: 4152. Total energy = 4642.9496 kcal/mol (4639.0824 without restraints) Performing minimization step: 4153. Total energy = 4642.4220 kcal/mol (4638.5564 without restraints) Performing minimization step: 4154. Total energy = 4641.8949 kcal/mol (4638.0307 without restraints) Performing minimization step: 4155. Total energy = 4641.3679 kcal/mol (4637.5053 without restraints) Performing minimization step: 4156. Total energy = 4640.8411 kcal/mol (4636.9799 without restraints) Performing minimization step: 4157. Total energy = 4640.3148 kcal/mol (4636.4555 without restraints) Performing minimization step: 4158. Total energy = 4639.7890 kcal/mol (4635.9309 without restraints) Performing minimization step: 4159. Total energy = 4639.2635 kcal/mol (4635.4069 without restraints) Performing minimization step: 4160. Total energy = 4638.7386 kcal/mol (4634.8835 without restraints) Performing minimization step: 4161. Total energy = 4638.2139 kcal/mol (4634.3603 without restraints) Performing minimization step: 4162. Total energy = 4637.6894 kcal/mol (4633.8374 without restraints) Performing minimization step: 4163. Total energy = 4637.1654 kcal/mol (4633.3149 without restraints) Performing minimization step: 4164. Total energy = 4636.6418 kcal/mol (4632.7928 without restraints) Performing minimization step: 4165. Total energy = 4636.1184 kcal/mol (4632.2710 without restraints) Performing minimization step: 4166. Total energy = 4635.5951 kcal/mol (4631.7491 without restraints) Performing minimization step: 4167. Total energy = 4635.0720 kcal/mol (4631.2276 without restraints) Performing minimization step: 4168. Total energy = 4634.5495 kcal/mol (4630.7066 without restraints) Performing minimization step: 4169. Total energy = 4634.0273 kcal/mol (4630.1859 without restraints) Performing minimization step: 4170. Total energy = 4633.5055 kcal/mol (4629.6657 without restraints) Performing minimization step: 4171. Total energy = 4632.9843 kcal/mol (4629.1459 without restraints) Performing minimization step: 4172. Total energy = 4632.4627 kcal/mol (4628.6259 without restraints) Performing minimization step: 4173. Total energy = 4631.9420 kcal/mol (4628.1067 without restraints) Performing minimization step: 4174. Total energy = 4631.4213 kcal/mol (4627.5875 without restraints) Performing minimization step: 4175. Total energy = 4630.9010 kcal/mol (4627.0687 without restraints) Performing minimization step: 4176. Total energy = 4630.3815 kcal/mol (4626.5507 without restraints) Performing minimization step: 4177. Total energy = 4629.8623 kcal/mol (4626.0331 without restraints) Performing minimization step: 4178. Total energy = 4629.3433 kcal/mol (4625.5156 without restraints) Performing minimization step: 4179. Total energy = 4628.8246 kcal/mol (4624.9984 without restraints) Performing minimization step: 4180. Total energy = 4628.3062 kcal/mol (4624.4817 without restraints) Performing minimization step: 4181. Total energy = 4627.7884 kcal/mol (4623.9653 without restraints) Performing minimization step: 4182. Total energy = 4627.2705 kcal/mol (4623.4489 without restraints) Performing minimization step: 4183. Total energy = 4626.7532 kcal/mol (4622.9330 without restraints) Performing minimization step: 4184. Total energy = 4626.2357 kcal/mol (4622.4171 without restraints) Performing minimization step: 4185. Total energy = 4625.7190 kcal/mol (4621.9019 without restraints) Performing minimization step: 4186. Total energy = 4625.2027 kcal/mol (4621.3871 without restraints) Performing minimization step: 4187. Total energy = 4624.6865 kcal/mol (4620.8725 without restraints) Performing minimization step: 4188. Total energy = 4624.1706 kcal/mol (4620.3580 without restraints) Performing minimization step: 4189. Total energy = 4623.6552 kcal/mol (4619.8442 without restraints) Performing minimization step: 4190. Total energy = 4623.1404 kcal/mol (4619.3308 without restraints) Performing minimization step: 4191. Total energy = 4622.6256 kcal/mol (4618.8176 without restraints) Performing minimization step: 4192. Total energy = 4622.1112 kcal/mol (4618.3047 without restraints) Performing minimization step: 4193. Total energy = 4621.5971 kcal/mol (4617.7921 without restraints) Performing minimization step: 4194. Total energy = 4621.0837 kcal/mol (4617.2803 without restraints) Performing minimization step: 4195. Total energy = 4620.5708 kcal/mol (4616.7689 without restraints) Performing minimization step: 4196. Total energy = 4620.0578 kcal/mol (4616.2574 without restraints) Performing minimization step: 4197. Total energy = 4619.5450 kcal/mol (4615.7460 without restraints) Performing minimization step: 4198. Total energy = 4619.0323 kcal/mol (4615.2350 without restraints) Performing minimization step: 4199. Total energy = 4618.5203 kcal/mol (4614.7244 without restraints) Performing minimization step: 4200. Total energy = 4618.0085 kcal/mol (4614.2141 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 4617.4971 kcal/mol (4613.7042 without restraints) Performing minimization step: 4202. Total energy = 4616.9865 kcal/mol (4613.1953 without restraints) Performing minimization step: 4203. Total energy = 4616.4758 kcal/mol (4612.6860 without restraints) Performing minimization step: 4204. Total energy = 4615.9656 kcal/mol (4612.1773 without restraints) Performing minimization step: 4205. Total energy = 4615.4555 kcal/mol (4611.6688 without restraints) Performing minimization step: 4206. Total energy = 4614.9464 kcal/mol (4611.1611 without restraints) Performing minimization step: 4207. Total energy = 4614.4372 kcal/mol (4610.6534 without restraints) Performing minimization step: 4208. Total energy = 4613.9288 kcal/mol (4610.1466 without restraints) Performing minimization step: 4209. Total energy = 4613.4206 kcal/mol (4609.6399 without restraints) Performing minimization step: 4210. Total energy = 4612.9122 kcal/mol (4609.1330 without restraints) Performing minimization step: 4211. Total energy = 4612.4037 kcal/mol (4608.6260 without restraints) Performing minimization step: 4212. Total energy = 4611.8960 kcal/mol (4608.1198 without restraints) Performing minimization step: 4213. Total energy = 4611.3886 kcal/mol (4607.6141 without restraints) Performing minimization step: 4214. Total energy = 4610.8819 kcal/mol (4607.1088 without restraints) Performing minimization step: 4215. Total energy = 4610.3752 kcal/mol (4606.6036 without restraints) Performing minimization step: 4216. Total energy = 4609.8689 kcal/mol (4606.0990 without restraints) Performing minimization step: 4217. Total energy = 4609.3630 kcal/mol (4605.5944 without restraints) Performing minimization step: 4218. Total energy = 4608.8571 kcal/mol (4605.0901 without restraints) Performing minimization step: 4219. Total energy = 4608.3518 kcal/mol (4604.5863 without restraints) Performing minimization step: 4220. Total energy = 4607.8468 kcal/mol (4604.0828 without restraints) Performing minimization step: 4221. Total energy = 4607.3422 kcal/mol (4603.5797 without restraints) Performing minimization step: 4222. Total energy = 4606.8380 kcal/mol (4603.0770 without restraints) Performing minimization step: 4223. Total energy = 4606.3340 kcal/mol (4602.5745 without restraints) Performing minimization step: 4224. Total energy = 4605.8304 kcal/mol (4602.0725 without restraints) Performing minimization step: 4225. Total energy = 4605.3269 kcal/mol (4601.5704 without restraints) Performing minimization step: 4226. Total energy = 4604.8238 kcal/mol (4601.0688 without restraints) Performing minimization step: 4227. Total energy = 4604.3211 kcal/mol (4600.5677 without restraints) Performing minimization step: 4228. Total energy = 4603.8189 kcal/mol (4600.0670 without restraints) Performing minimization step: 4229. Total energy = 4603.3174 kcal/mol (4599.5672 without restraints) Performing minimization step: 4230. Total energy = 4602.8161 kcal/mol (4599.0672 without restraints) Performing minimization step: 4231. Total energy = 4602.3147 kcal/mol (4598.5673 without restraints) Performing minimization step: 4232. Total energy = 4601.8137 kcal/mol (4598.0680 without restraints) Performing minimization step: 4233. Total energy = 4601.3131 kcal/mol (4597.5688 without restraints) Performing minimization step: 4234. Total energy = 4600.8127 kcal/mol (4597.0699 without restraints) Performing minimization step: 4235. Total energy = 4600.3126 kcal/mol (4596.5714 without restraints) Performing minimization step: 4236. Total energy = 4599.8129 kcal/mol (4596.0731 without restraints) Performing minimization step: 4237. Total energy = 4599.3131 kcal/mol (4595.5748 without restraints) Performing minimization step: 4238. Total energy = 4598.8142 kcal/mol (4595.0775 without restraints) Performing minimization step: 4239. Total energy = 4598.3156 kcal/mol (4594.5804 without restraints) Performing minimization step: 4240. Total energy = 4597.8172 kcal/mol (4594.0835 without restraints) Performing minimization step: 4241. Total energy = 4597.3195 kcal/mol (4593.5874 without restraints) Performing minimization step: 4242. Total energy = 4596.8223 kcal/mol (4593.0916 without restraints) Performing minimization step: 4243. Total energy = 4596.3252 kcal/mol (4592.5960 without restraints) Performing minimization step: 4244. Total energy = 4595.8286 kcal/mol (4592.1009 without restraints) Performing minimization step: 4245. Total energy = 4595.3321 kcal/mol (4591.6060 without restraints) Performing minimization step: 4246. Total energy = 4594.8359 kcal/mol (4591.1112 without restraints) Performing minimization step: 4247. Total energy = 4594.3398 kcal/mol (4590.6166 without restraints) Performing minimization step: 4248. Total energy = 4593.8441 kcal/mol (4590.1224 without restraints) Performing minimization step: 4249. Total energy = 4593.3486 kcal/mol (4589.6285 without restraints) Performing minimization step: 4250. Total energy = 4592.8537 kcal/mol (4589.1351 without restraints) Performing minimization step: 4251. Total energy = 4592.3589 kcal/mol (4588.6418 without restraints) Performing minimization step: 4252. Total energy = 4591.8646 kcal/mol (4588.1490 without restraints) Performing minimization step: 4253. Total energy = 4591.3705 kcal/mol (4587.6565 without restraints) Performing minimization step: 4254. Total energy = 4590.8774 kcal/mol (4587.1648 without restraints) Performing minimization step: 4255. Total energy = 4590.3843 kcal/mol (4586.6732 without restraints) Performing minimization step: 4256. Total energy = 4589.8912 kcal/mol (4586.1817 without restraints) Performing minimization step: 4257. Total energy = 4589.3986 kcal/mol (4585.6906 without restraints) Performing minimization step: 4258. Total energy = 4588.9063 kcal/mol (4585.1998 without restraints) Performing minimization step: 4259. Total energy = 4588.4142 kcal/mol (4584.7093 without restraints) Performing minimization step: 4260. Total energy = 4587.9224 kcal/mol (4584.2189 without restraints) Performing minimization step: 4261. Total energy = 4587.4308 kcal/mol (4583.7288 without restraints) Performing minimization step: 4262. Total energy = 4586.9400 kcal/mol (4583.2396 without restraints) Performing minimization step: 4263. Total energy = 4586.4493 kcal/mol (4582.7504 without restraints) Performing minimization step: 4264. Total energy = 4585.9587 kcal/mol (4582.2613 without restraints) Performing minimization step: 4265. Total energy = 4585.4691 kcal/mol (4581.7732 without restraints) Performing minimization step: 4266. Total energy = 4584.9791 kcal/mol (4581.2845 without restraints) Performing minimization step: 4267. Total energy = 4584.4890 kcal/mol (4580.7961 without restraints) Performing minimization step: 4268. Total energy = 4583.9998 kcal/mol (4580.3084 without restraints) Performing minimization step: 4269. Total energy = 4583.5108 kcal/mol (4579.8209 without restraints) Performing minimization step: 4270. Total energy = 4583.0223 kcal/mol (4579.3341 without restraints) Performing minimization step: 4271. Total energy = 4582.5344 kcal/mol (4578.8477 without restraints) Performing minimization step: 4272. Total energy = 4582.0467 kcal/mol (4578.3614 without restraints) Performing minimization step: 4273. Total energy = 4581.5590 kcal/mol (4577.8752 without restraints) Performing minimization step: 4274. Total energy = 4581.0717 kcal/mol (4577.3893 without restraints) Performing minimization step: 4275. Total energy = 4580.5846 kcal/mol (4576.9038 without restraints) Performing minimization step: 4276. Total energy = 4580.0978 kcal/mol (4576.4185 without restraints) Performing minimization step: 4277. Total energy = 4579.6117 kcal/mol (4575.9339 without restraints) Performing minimization step: 4278. Total energy = 4579.1257 kcal/mol (4575.4494 without restraints) Performing minimization step: 4279. Total energy = 4578.6401 kcal/mol (4574.9653 without restraints) Performing minimization step: 4280. Total energy = 4578.1546 kcal/mol (4574.4813 without restraints) Performing minimization step: 4281. Total energy = 4577.6696 kcal/mol (4573.9979 without restraints) Performing minimization step: 4282. Total energy = 4577.1851 kcal/mol (4573.5149 without restraints) Performing minimization step: 4283. Total energy = 4576.7009 kcal/mol (4573.0323 without restraints) Performing minimization step: 4284. Total energy = 4576.2167 kcal/mol (4572.5494 without restraints) Performing minimization step: 4285. Total energy = 4575.7332 kcal/mol (4572.0674 without restraints) Performing minimization step: 4286. Total energy = 4575.2497 kcal/mol (4571.5854 without restraints) Performing minimization step: 4287. Total energy = 4574.7665 kcal/mol (4571.1038 without restraints) Performing minimization step: 4288. Total energy = 4574.2844 kcal/mol (4570.6234 without restraints) Performing minimization step: 4289. Total energy = 4573.8023 kcal/mol (4570.1426 without restraints) Performing minimization step: 4290. Total energy = 4573.3200 kcal/mol (4569.6618 without restraints) Performing minimization step: 4291. Total energy = 4572.8383 kcal/mol (4569.1817 without restraints) Performing minimization step: 4292. Total energy = 4572.3569 kcal/mol (4568.7016 without restraints) Performing minimization step: 4293. Total energy = 4571.8755 kcal/mol (4568.2217 without restraints) Performing minimization step: 4294. Total energy = 4571.3944 kcal/mol (4567.7422 without restraints) Performing minimization step: 4295. Total energy = 4570.9136 kcal/mol (4567.2630 without restraints) Performing minimization step: 4296. Total energy = 4570.4333 kcal/mol (4566.7842 without restraints) Performing minimization step: 4297. Total energy = 4569.9533 kcal/mol (4566.3057 without restraints) Performing minimization step: 4298. Total energy = 4569.4739 kcal/mol (4565.8279 without restraints) Performing minimization step: 4299. Total energy = 4568.9948 kcal/mol (4565.3502 without restraints) Performing minimization step: 4300. Total energy = 4568.5158 kcal/mol (4564.8728 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 4568.0371 kcal/mol (4564.3955 without restraints) Performing minimization step: 4302. Total energy = 4567.5586 kcal/mol (4563.9185 without restraints) Performing minimization step: 4303. Total energy = 4567.0807 kcal/mol (4563.4422 without restraints) Performing minimization step: 4304. Total energy = 4566.6032 kcal/mol (4562.9661 without restraints) Performing minimization step: 4305. Total energy = 4566.1257 kcal/mol (4562.4901 without restraints) Performing minimization step: 4306. Total energy = 4565.6486 kcal/mol (4562.0145 without restraints) Performing minimization step: 4307. Total energy = 4565.1725 kcal/mol (4561.5399 without restraints) Performing minimization step: 4308. Total energy = 4564.6960 kcal/mol (4561.0651 without restraints) Performing minimization step: 4309. Total energy = 4564.2200 kcal/mol (4560.5905 without restraints) Performing minimization step: 4310. Total energy = 4563.7445 kcal/mol (4560.1164 without restraints) Performing minimization step: 4311. Total energy = 4563.2690 kcal/mol (4559.6424 without restraints) Performing minimization step: 4312. Total energy = 4562.7940 kcal/mol (4559.1689 without restraints) Performing minimization step: 4313. Total energy = 4562.3190 kcal/mol (4558.6953 without restraints) Performing minimization step: 4314. Total energy = 4561.8444 kcal/mol (4558.2223 without restraints) Performing minimization step: 4315. Total energy = 4561.3700 kcal/mol (4557.7494 without restraints) Performing minimization step: 4316. Total energy = 4560.8957 kcal/mol (4557.2766 without restraints) Performing minimization step: 4317. Total energy = 4560.4221 kcal/mol (4556.8045 without restraints) Performing minimization step: 4318. Total energy = 4559.9486 kcal/mol (4556.3326 without restraints) Performing minimization step: 4319. Total energy = 4559.4755 kcal/mol (4555.8609 without restraints) Performing minimization step: 4320. Total energy = 4559.0026 kcal/mol (4555.3896 without restraints) Performing minimization step: 4321. Total energy = 4558.5308 kcal/mol (4554.9194 without restraints) Performing minimization step: 4322. Total energy = 4558.0589 kcal/mol (4554.4489 without restraints) Performing minimization step: 4323. Total energy = 4557.5872 kcal/mol (4553.9786 without restraints) Performing minimization step: 4324. Total energy = 4557.1153 kcal/mol (4553.5083 without restraints) Performing minimization step: 4325. Total energy = 4556.6446 kcal/mol (4553.0391 without restraints) Performing minimization step: 4326. Total energy = 4556.1737 kcal/mol (4552.5697 without restraints) Performing minimization step: 4327. Total energy = 4555.7033 kcal/mol (4552.1008 without restraints) Performing minimization step: 4328. Total energy = 4555.2332 kcal/mol (4551.6323 without restraints) Performing minimization step: 4329. Total energy = 4554.7632 kcal/mol (4551.1637 without restraints) Performing minimization step: 4330. Total energy = 4554.2934 kcal/mol (4550.6954 without restraints) Performing minimization step: 4331. Total energy = 4553.8239 kcal/mol (4550.2274 without restraints) Performing minimization step: 4332. Total energy = 4553.3552 kcal/mol (4549.7603 without restraints) Performing minimization step: 4333. Total energy = 4552.8864 kcal/mol (4549.2930 without restraints) Performing minimization step: 4334. Total energy = 4552.4180 kcal/mol (4548.8261 without restraints) Performing minimization step: 4335. Total energy = 4551.9499 kcal/mol (4548.3594 without restraints) Performing minimization step: 4336. Total energy = 4551.4819 kcal/mol (4547.8930 without restraints) Performing minimization step: 4337. Total energy = 4551.0144 kcal/mol (4547.4269 without restraints) Performing minimization step: 4338. Total energy = 4550.5472 kcal/mol (4546.9612 without restraints) Performing minimization step: 4339. Total energy = 4550.0800 kcal/mol (4546.4955 without restraints) Performing minimization step: 4340. Total energy = 4549.6135 kcal/mol (4546.0305 without restraints) Performing minimization step: 4341. Total energy = 4549.1476 kcal/mol (4545.5661 without restraints) Performing minimization step: 4342. Total energy = 4548.6815 kcal/mol (4545.1014 without restraints) Performing minimization step: 4343. Total energy = 4548.2158 kcal/mol (4544.6373 without restraints) Performing minimization step: 4344. Total energy = 4547.7506 kcal/mol (4544.1736 without restraints) Performing minimization step: 4345. Total energy = 4547.2855 kcal/mol (4543.7100 without restraints) Performing minimization step: 4346. Total energy = 4546.8211 kcal/mol (4543.2471 without restraints) Performing minimization step: 4347. Total energy = 4546.3567 kcal/mol (4542.7842 without restraints) Performing minimization step: 4348. Total energy = 4545.8927 kcal/mol (4542.3218 without restraints) Performing minimization step: 4349. Total energy = 4545.4289 kcal/mol (4541.8594 without restraints) Performing minimization step: 4350. Total energy = 4544.9657 kcal/mol (4541.3978 without restraints) Performing minimization step: 4351. Total energy = 4544.5018 kcal/mol (4540.9353 without restraints) Performing minimization step: 4352. Total energy = 4544.0388 kcal/mol (4540.4738 without restraints) Performing minimization step: 4353. Total energy = 4543.5768 kcal/mol (4540.0133 without restraints) Performing minimization step: 4354. Total energy = 4543.1143 kcal/mol (4539.5523 without restraints) Performing minimization step: 4355. Total energy = 4542.6523 kcal/mol (4539.0918 without restraints) Performing minimization step: 4356. Total energy = 4542.1908 kcal/mol (4538.6318 without restraints) Performing minimization step: 4357. Total energy = 4541.7301 kcal/mol (4538.1727 without restraints) Performing minimization step: 4358. Total energy = 4541.2690 kcal/mol (4537.7130 without restraints) Performing minimization step: 4359. Total energy = 4540.8082 kcal/mol (4537.2537 without restraints) Performing minimization step: 4360. Total energy = 4540.3477 kcal/mol (4536.7947 without restraints) Performing minimization step: 4361. Total energy = 4539.8877 kcal/mol (4536.3363 without restraints) Performing minimization step: 4362. Total energy = 4539.4280 kcal/mol (4535.8779 without restraints) Performing minimization step: 4363. Total energy = 4538.9684 kcal/mol (4535.4199 without restraints) Performing minimization step: 4364. Total energy = 4538.5094 kcal/mol (4534.9624 without restraints) Performing minimization step: 4365. Total energy = 4538.0507 kcal/mol (4534.5051 without restraints) Performing minimization step: 4366. Total energy = 4537.5918 kcal/mol (4534.0478 without restraints) Performing minimization step: 4367. Total energy = 4537.1331 kcal/mol (4533.5905 without restraints) Performing minimization step: 4368. Total energy = 4536.6748 kcal/mol (4533.1338 without restraints) Performing minimization step: 4369. Total energy = 4536.2169 kcal/mol (4532.6773 without restraints) Performing minimization step: 4370. Total energy = 4535.7595 kcal/mol (4532.2215 without restraints) Performing minimization step: 4371. Total energy = 4535.3022 kcal/mol (4531.7657 without restraints) Performing minimization step: 4372. Total energy = 4534.8453 kcal/mol (4531.3103 without restraints) Performing minimization step: 4373. Total energy = 4534.3887 kcal/mol (4530.8551 without restraints) Performing minimization step: 4374. Total energy = 4533.9323 kcal/mol (4530.4002 without restraints) Performing minimization step: 4375. Total energy = 4533.4764 kcal/mol (4529.9459 without restraints) Performing minimization step: 4376. Total energy = 4533.0209 kcal/mol (4529.4918 without restraints) Performing minimization step: 4377. Total energy = 4532.5654 kcal/mol (4529.0378 without restraints) Performing minimization step: 4378. Total energy = 4532.1098 kcal/mol (4528.5835 without restraints) Performing minimization step: 4379. Total energy = 4531.6546 kcal/mol (4528.1300 without restraints) Performing minimization step: 4380. Total energy = 4531.2001 kcal/mol (4527.6769 without restraints) Performing minimization step: 4381. Total energy = 4530.7460 kcal/mol (4527.2245 without restraints) Performing minimization step: 4382. Total energy = 4530.2921 kcal/mol (4526.7719 without restraints) Performing minimization step: 4383. Total energy = 4529.8382 kcal/mol (4526.3196 without restraints) Performing minimization step: 4384. Total energy = 4529.3852 kcal/mol (4525.8680 without restraints) Performing minimization step: 4385. Total energy = 4528.9320 kcal/mol (4525.4163 without restraints) Performing minimization step: 4386. Total energy = 4528.4791 kcal/mol (4524.9649 without restraints) Performing minimization step: 4387. Total energy = 4528.0266 kcal/mol (4524.5140 without restraints) Performing minimization step: 4388. Total energy = 4527.5744 kcal/mol (4524.0632 without restraints) Performing minimization step: 4389. Total energy = 4527.1227 kcal/mol (4523.6130 without restraints) Performing minimization step: 4390. Total energy = 4526.6717 kcal/mol (4523.1634 without restraints) Performing minimization step: 4391. Total energy = 4526.2204 kcal/mol (4522.7137 without restraints) Performing minimization step: 4392. Total energy = 4525.7698 kcal/mol (4522.2646 without restraints) Performing minimization step: 4393. Total energy = 4525.3191 kcal/mol (4521.8154 without restraints) Performing minimization step: 4394. Total energy = 4524.8688 kcal/mol (4521.3664 without restraints) Performing minimization step: 4395. Total energy = 4524.4186 kcal/mol (4520.9178 without restraints) Performing minimization step: 4396. Total energy = 4523.9690 kcal/mol (4520.4698 without restraints) Performing minimization step: 4397. Total energy = 4523.5194 kcal/mol (4520.0216 without restraints) Performing minimization step: 4398. Total energy = 4523.0699 kcal/mol (4519.5736 without restraints) Performing minimization step: 4399. Total energy = 4522.6209 kcal/mol (4519.1262 without restraints) Performing minimization step: 4400. Total energy = 4522.1722 kcal/mol (4518.6789 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 4521.7237 kcal/mol (4518.2318 without restraints) Performing minimization step: 4402. Total energy = 4521.2757 kcal/mol (4517.7853 without restraints) Performing minimization step: 4403. Total energy = 4520.8283 kcal/mol (4517.3394 without restraints) Performing minimization step: 4404. Total energy = 4520.3811 kcal/mol (4516.8938 without restraints) Performing minimization step: 4405. Total energy = 4519.9343 kcal/mol (4516.4484 without restraints) Performing minimization step: 4406. Total energy = 4519.4873 kcal/mol (4516.0028 without restraints) Performing minimization step: 4407. Total energy = 4519.0405 kcal/mol (4515.5576 without restraints) Performing minimization step: 4408. Total energy = 4518.5941 kcal/mol (4515.1127 without restraints) Performing minimization step: 4409. Total energy = 4518.1484 kcal/mol (4514.6685 without restraints) Performing minimization step: 4410. Total energy = 4517.7030 kcal/mol (4514.2246 without restraints) Performing minimization step: 4411. Total energy = 4517.2575 kcal/mol (4513.7806 without restraints) Performing minimization step: 4412. Total energy = 4516.8124 kcal/mol (4513.3368 without restraints) Performing minimization step: 4413. Total energy = 4516.3675 kcal/mol (4512.8935 without restraints) Performing minimization step: 4414. Total energy = 4515.9227 kcal/mol (4512.4502 without restraints) Performing minimization step: 4415. Total energy = 4515.4782 kcal/mol (4512.0072 without restraints) Performing minimization step: 4416. Total energy = 4515.0342 kcal/mol (4511.5646 without restraints) Performing minimization step: 4417. Total energy = 4514.5904 kcal/mol (4511.1223 without restraints) Performing minimization step: 4418. Total energy = 4514.1472 kcal/mol (4510.6807 without restraints) Performing minimization step: 4419. Total energy = 4513.7040 kcal/mol (4510.2389 without restraints) Performing minimization step: 4420. Total energy = 4513.2612 kcal/mol (4509.7975 without restraints) Performing minimization step: 4421. Total energy = 4512.8185 kcal/mol (4509.3564 without restraints) Performing minimization step: 4422. Total energy = 4512.3756 kcal/mol (4508.9150 without restraints) Performing minimization step: 4423. Total energy = 4511.9337 kcal/mol (4508.4746 without restraints) Performing minimization step: 4424. Total energy = 4511.4918 kcal/mol (4508.0341 without restraints) Performing minimization step: 4425. Total energy = 4511.0500 kcal/mol (4507.5938 without restraints) Performing minimization step: 4426. Total energy = 4510.6089 kcal/mol (4507.1544 without restraints) Performing minimization step: 4427. Total energy = 4510.1686 kcal/mol (4506.7154 without restraints) Performing minimization step: 4428. Total energy = 4509.7280 kcal/mol (4506.2762 without restraints) Performing minimization step: 4429. Total energy = 4509.2877 kcal/mol (4505.8374 without restraints) Performing minimization step: 4430. Total energy = 4508.8477 kcal/mol (4505.3989 without restraints) Performing minimization step: 4431. Total energy = 4508.4079 kcal/mol (4504.9607 without restraints) Performing minimization step: 4432. Total energy = 4507.9688 kcal/mol (4504.5230 without restraints) Performing minimization step: 4433. Total energy = 4507.5298 kcal/mol (4504.0854 without restraints) Performing minimization step: 4434. Total energy = 4507.0908 kcal/mol (4503.6479 without restraints) Performing minimization step: 4435. Total energy = 4506.6532 kcal/mol (4503.2120 without restraints) Performing minimization step: 4436. Total energy = 4506.2151 kcal/mol (4502.7752 without restraints) Performing minimization step: 4437. Total energy = 4505.7774 kcal/mol (4502.3389 without restraints) Performing minimization step: 4438. Total energy = 4505.3395 kcal/mol (4501.9025 without restraints) Performing minimization step: 4439. Total energy = 4504.9018 kcal/mol (4501.4663 without restraints) Performing minimization step: 4440. Total energy = 4504.4646 kcal/mol (4501.0309 without restraints) Performing minimization step: 4441. Total energy = 4504.0278 kcal/mol (4500.5953 without restraints) Performing minimization step: 4442. Total energy = 4503.5911 kcal/mol (4500.1600 without restraints) Performing minimization step: 4443. Total energy = 4503.1546 kcal/mol (4499.7250 without restraints) Performing minimization step: 4444. Total energy = 4502.7189 kcal/mol (4499.2908 without restraints) Performing minimization step: 4445. Total energy = 4502.2833 kcal/mol (4498.8567 without restraints) Performing minimization step: 4446. Total energy = 4501.8477 kcal/mol (4498.4226 without restraints) Performing minimization step: 4447. Total energy = 4501.4128 kcal/mol (4497.9891 without restraints) Performing minimization step: 4448. Total energy = 4500.9777 kcal/mol (4497.5555 without restraints) Performing minimization step: 4449. Total energy = 4500.5432 kcal/mol (4497.1225 without restraints) Performing minimization step: 4450. Total energy = 4500.1088 kcal/mol (4496.6894 without restraints) Performing minimization step: 4451. Total energy = 4499.6752 kcal/mol (4496.2574 without restraints) Performing minimization step: 4452. Total energy = 4499.2413 kcal/mol (4495.8250 without restraints) Performing minimization step: 4453. Total energy = 4498.8077 kcal/mol (4495.3929 without restraints) Performing minimization step: 4454. Total energy = 4498.3744 kcal/mol (4494.9611 without restraints) Performing minimization step: 4455. Total energy = 4497.9410 kcal/mol (4494.5292 without restraints) Performing minimization step: 4456. Total energy = 4497.5090 kcal/mol (4494.0987 without restraints) Performing minimization step: 4457. Total energy = 4497.0765 kcal/mol (4493.6676 without restraints) Performing minimization step: 4458. Total energy = 4496.6442 kcal/mol (4493.2367 without restraints) Performing minimization step: 4459. Total energy = 4496.2125 kcal/mol (4492.8067 without restraints) Performing minimization step: 4460. Total energy = 4495.7810 kcal/mol (4492.3766 without restraints) Performing minimization step: 4461. Total energy = 4495.3498 kcal/mol (4491.9468 without restraints) Performing minimization step: 4462. Total energy = 4494.9187 kcal/mol (4491.5171 without restraints) Performing minimization step: 4463. Total energy = 4494.4883 kcal/mol (4491.0883 without restraints) Performing minimization step: 4464. Total energy = 4494.0576 kcal/mol (4490.6589 without restraints) Performing minimization step: 4465. Total energy = 4493.6277 kcal/mol (4490.2306 without restraints) Performing minimization step: 4466. Total energy = 4493.1989 kcal/mol (4489.8033 without restraints) Performing minimization step: 4467. Total energy = 4492.7695 kcal/mol (4489.3753 without restraints) Performing minimization step: 4468. Total energy = 4492.3405 kcal/mol (4488.9478 without restraints) Performing minimization step: 4469. Total energy = 4491.9115 kcal/mol (4488.5203 without restraints) Performing minimization step: 4470. Total energy = 4491.4826 kcal/mol (4488.0928 without restraints) Performing minimization step: 4471. Total energy = 4491.0540 kcal/mol (4487.6658 without restraints) Performing minimization step: 4472. Total energy = 4490.6258 kcal/mol (4487.2390 without restraints) Performing minimization step: 4473. Total energy = 4490.1979 kcal/mol (4486.8125 without restraints) Performing minimization step: 4474. Total energy = 4489.7701 kcal/mol (4486.3862 without restraints) Performing minimization step: 4475. Total energy = 4489.3424 kcal/mol (4485.9600 without restraints) Performing minimization step: 4476. Total energy = 4488.9152 kcal/mol (4485.5342 without restraints) Performing minimization step: 4477. Total energy = 4488.4886 kcal/mol (4485.1093 without restraints) Performing minimization step: 4478. Total energy = 4488.0620 kcal/mol (4484.6840 without restraints) Performing minimization step: 4479. Total energy = 4487.6352 kcal/mol (4484.2587 without restraints) Performing minimization step: 4480. Total energy = 4487.2097 kcal/mol (4483.8345 without restraints) Performing minimization step: 4481. Total energy = 4486.7835 kcal/mol (4483.4099 without restraints) Performing minimization step: 4482. Total energy = 4486.3578 kcal/mol (4482.9856 without restraints) Performing minimization step: 4483. Total energy = 4485.9325 kcal/mol (4482.5618 without restraints) Performing minimization step: 4484. Total energy = 4485.5073 kcal/mol (4482.1380 without restraints) Performing minimization step: 4485. Total energy = 4485.0829 kcal/mol (4481.7151 without restraints) Performing minimization step: 4486. Total energy = 4484.6580 kcal/mol (4481.2917 without restraints) Performing minimization step: 4487. Total energy = 4484.2337 kcal/mol (4480.8688 without restraints) Performing minimization step: 4488. Total energy = 4483.8101 kcal/mol (4480.4467 without restraints) Performing minimization step: 4489. Total energy = 4483.3870 kcal/mol (4480.0252 without restraints) Performing minimization step: 4490. Total energy = 4482.9638 kcal/mol (4479.6035 without restraints) Performing minimization step: 4491. Total energy = 4482.5409 kcal/mol (4479.1821 without restraints) Performing minimization step: 4492. Total energy = 4482.1180 kcal/mol (4478.7605 without restraints) Performing minimization step: 4493. Total energy = 4481.6953 kcal/mol (4478.3392 without restraints) Performing minimization step: 4494. Total energy = 4481.2728 kcal/mol (4477.9182 without restraints) Performing minimization step: 4495. Total energy = 4480.8505 kcal/mol (4477.4974 without restraints) Performing minimization step: 4496. Total energy = 4480.4288 kcal/mol (4477.0771 without restraints) Performing minimization step: 4497. Total energy = 4480.0073 kcal/mol (4476.6571 without restraints) Performing minimization step: 4498. Total energy = 4479.5855 kcal/mol (4476.2367 without restraints) Performing minimization step: 4499. Total energy = 4479.1645 kcal/mol (4475.8173 without restraints) Performing minimization step: 4500. Total energy = 4478.7436 kcal/mol (4475.3977 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 4478.3233 kcal/mol (4474.9789 without restraints) Performing minimization step: 4502. Total energy = 4477.9032 kcal/mol (4474.5602 without restraints) Performing minimization step: 4503. Total energy = 4477.4838 kcal/mol (4474.1423 without restraints) Performing minimization step: 4504. Total energy = 4477.0644 kcal/mol (4473.7244 without restraints) Performing minimization step: 4505. Total energy = 4476.6450 kcal/mol (4473.3064 without restraints) Performing minimization step: 4506. Total energy = 4476.2254 kcal/mol (4472.8884 without restraints) Performing minimization step: 4507. Total energy = 4475.8065 kcal/mol (4472.4709 without restraints) Performing minimization step: 4508. Total energy = 4475.3877 kcal/mol (4472.0536 without restraints) Performing minimization step: 4509. Total energy = 4474.9699 kcal/mol (4471.6372 without restraints) Performing minimization step: 4510. Total energy = 4474.5516 kcal/mol (4471.2204 without restraints) Performing minimization step: 4511. Total energy = 4474.1337 kcal/mol (4470.8039 without restraints) Performing minimization step: 4512. Total energy = 4473.7161 kcal/mol (4470.3879 without restraints) Performing minimization step: 4513. Total energy = 4473.2996 kcal/mol (4469.9728 without restraints) Performing minimization step: 4514. Total energy = 4472.8825 kcal/mol (4469.5571 without restraints) Performing minimization step: 4515. Total energy = 4472.4657 kcal/mol (4469.1418 without restraints) Performing minimization step: 4516. Total energy = 4472.0496 kcal/mol (4468.7271 without restraints) Performing minimization step: 4517. Total energy = 4471.6336 kcal/mol (4468.3126 without restraints) Performing minimization step: 4518. Total energy = 4471.2176 kcal/mol (4467.8980 without restraints) Performing minimization step: 4519. Total energy = 4470.8018 kcal/mol (4467.4838 without restraints) Performing minimization step: 4520. Total energy = 4470.3869 kcal/mol (4467.0703 without restraints) Performing minimization step: 4521. Total energy = 4469.9720 kcal/mol (4466.6568 without restraints) Performing minimization step: 4522. Total energy = 4469.5567 kcal/mol (4466.2429 without restraints) Performing minimization step: 4523. Total energy = 4469.1421 kcal/mol (4465.8298 without restraints) Performing minimization step: 4524. Total energy = 4468.7277 kcal/mol (4465.4169 without restraints) Performing minimization step: 4525. Total energy = 4468.3135 kcal/mol (4465.0041 without restraints) Performing minimization step: 4526. Total energy = 4467.8995 kcal/mol (4464.5916 without restraints) Performing minimization step: 4527. Total energy = 4467.4858 kcal/mol (4464.1793 without restraints) Performing minimization step: 4528. Total energy = 4467.0729 kcal/mol (4463.7679 without restraints) Performing minimization step: 4529. Total energy = 4466.6597 kcal/mol (4463.3562 without restraints) Performing minimization step: 4530. Total energy = 4466.2469 kcal/mol (4462.9450 without restraints) Performing minimization step: 4531. Total energy = 4465.8346 kcal/mol (4462.5339 without restraints) Performing minimization step: 4532. Total energy = 4465.4228 kcal/mol (4462.1236 without restraints) Performing minimization step: 4533. Total energy = 4465.0108 kcal/mol (4461.7131 without restraints) Performing minimization step: 4534. Total energy = 4464.5991 kcal/mol (4461.3029 without restraints) Performing minimization step: 4535. Total energy = 4464.1876 kcal/mol (4460.8927 without restraints) Performing minimization step: 4536. Total energy = 4463.7764 kcal/mol (4460.4830 without restraints) Performing minimization step: 4537. Total energy = 4463.3652 kcal/mol (4460.0733 without restraints) Performing minimization step: 4538. Total energy = 4462.9547 kcal/mol (4459.6643 without restraints) Performing minimization step: 4539. Total energy = 4462.5445 kcal/mol (4459.2554 without restraints) Performing minimization step: 4540. Total energy = 4462.1341 kcal/mol (4458.8465 without restraints) Performing minimization step: 4541. Total energy = 4461.7244 kcal/mol (4458.4382 without restraints) Performing minimization step: 4542. Total energy = 4461.3146 kcal/mol (4458.0299 without restraints) Performing minimization step: 4543. Total energy = 4460.9053 kcal/mol (4457.6220 without restraints) Performing minimization step: 4544. Total energy = 4460.4962 kcal/mol (4457.2144 without restraints) Performing minimization step: 4545. Total energy = 4460.0881 kcal/mol (4456.8077 without restraints) Performing minimization step: 4546. Total energy = 4459.6798 kcal/mol (4456.4008 without restraints) Performing minimization step: 4547. Total energy = 4459.2712 kcal/mol (4455.9938 without restraints) Performing minimization step: 4548. Total energy = 4458.8627 kcal/mol (4455.5867 without restraints) Performing minimization step: 4549. Total energy = 4458.4552 kcal/mol (4455.1806 without restraints) Performing minimization step: 4550. Total energy = 4458.0477 kcal/mol (4454.7746 without restraints) Performing minimization step: 4551. Total energy = 4457.6403 kcal/mol (4454.3685 without restraints) Performing minimization step: 4552. Total energy = 4457.2328 kcal/mol (4453.9627 without restraints) Performing minimization step: 4553. Total energy = 4456.8260 kcal/mol (4453.5573 without restraints) Performing minimization step: 4554. Total energy = 4456.4196 kcal/mol (4453.1523 without restraints) Performing minimization step: 4555. Total energy = 4456.0132 kcal/mol (4452.7473 without restraints) Performing minimization step: 4556. Total energy = 4455.6070 kcal/mol (4452.3426 without restraints) Performing minimization step: 4557. Total energy = 4455.2011 kcal/mol (4451.9381 without restraints) Performing minimization step: 4558. Total energy = 4454.7956 kcal/mol (4451.5340 without restraints) Performing minimization step: 4559. Total energy = 4454.3901 kcal/mol (4451.1300 without restraints) Performing minimization step: 4560. Total energy = 4453.9851 kcal/mol (4450.7264 without restraints) Performing minimization step: 4561. Total energy = 4453.5801 kcal/mol (4450.3230 without restraints) Performing minimization step: 4562. Total energy = 4453.1758 kcal/mol (4449.9199 without restraints) Performing minimization step: 4563. Total energy = 4452.7716 kcal/mol (4449.5173 without restraints) Performing minimization step: 4564. Total energy = 4452.3676 kcal/mol (4449.1148 without restraints) Performing minimization step: 4565. Total energy = 4451.9643 kcal/mol (4448.7129 without restraints) Performing minimization step: 4566. Total energy = 4451.5610 kcal/mol (4448.3111 without restraints) Performing minimization step: 4567. Total energy = 4451.1580 kcal/mol (4447.9094 without restraints) Performing minimization step: 4568. Total energy = 4450.7548 kcal/mol (4447.5076 without restraints) Performing minimization step: 4569. Total energy = 4450.3520 kcal/mol (4447.1063 without restraints) Performing minimization step: 4570. Total energy = 4449.9496 kcal/mol (4446.7053 without restraints) Performing minimization step: 4571. Total energy = 4449.5477 kcal/mol (4446.3050 without restraints) Performing minimization step: 4572. Total energy = 4449.1459 kcal/mol (4445.9046 without restraints) Performing minimization step: 4573. Total energy = 4448.7448 kcal/mol (4445.5048 without restraints) Performing minimization step: 4574. Total energy = 4448.3436 kcal/mol (4445.1052 without restraints) Performing minimization step: 4575. Total energy = 4447.9427 kcal/mol (4444.7056 without restraints) Performing minimization step: 4576. Total energy = 4447.5420 kcal/mol (4444.3064 without restraints) Performing minimization step: 4577. Total energy = 4447.1414 kcal/mol (4443.9072 without restraints) Performing minimization step: 4578. Total energy = 4446.7408 kcal/mol (4443.5081 without restraints) Performing minimization step: 4579. Total energy = 4446.3407 kcal/mol (4443.1093 without restraints) Performing minimization step: 4580. Total energy = 4445.9405 kcal/mol (4442.7106 without restraints) Performing minimization step: 4581. Total energy = 4445.5405 kcal/mol (4442.3119 without restraints) Performing minimization step: 4582. Total energy = 4445.1407 kcal/mol (4441.9137 without restraints) Performing minimization step: 4583. Total energy = 4444.7413 kcal/mol (4441.5158 without restraints) Performing minimization step: 4584. Total energy = 4444.3425 kcal/mol (4441.1183 without restraints) Performing minimization step: 4585. Total energy = 4443.9437 kcal/mol (4440.7210 without restraints) Performing minimization step: 4586. Total energy = 4443.5452 kcal/mol (4440.3239 without restraints) Performing minimization step: 4587. Total energy = 4443.1471 kcal/mol (4439.9272 without restraints) Performing minimization step: 4588. Total energy = 4442.7491 kcal/mol (4439.5307 without restraints) Performing minimization step: 4589. Total energy = 4442.3516 kcal/mol (4439.1346 without restraints) Performing minimization step: 4590. Total energy = 4441.9538 kcal/mol (4438.7382 without restraints) Performing minimization step: 4591. Total energy = 4441.5565 kcal/mol (4438.3425 without restraints) Performing minimization step: 4592. Total energy = 4441.1596 kcal/mol (4437.9468 without restraints) Performing minimization step: 4593. Total energy = 4440.7628 kcal/mol (4437.5518 without restraints) Performing minimization step: 4594. Total energy = 4440.3665 kcal/mol (4437.1567 without restraints) Performing minimization step: 4595. Total energy = 4439.9702 kcal/mol (4436.7619 without restraints) Performing minimization step: 4596. Total energy = 4439.5741 kcal/mol (4436.3672 without restraints) Performing minimization step: 4597. Total energy = 4439.1785 kcal/mol (4435.9730 without restraints) Performing minimization step: 4598. Total energy = 4438.7828 kcal/mol (4435.5787 without restraints) Performing minimization step: 4599. Total energy = 4438.3877 kcal/mol (4435.1850 without restraints) Performing minimization step: 4600. Total energy = 4437.9925 kcal/mol (4434.7912 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 4437.5975 kcal/mol (4434.3977 without restraints) Performing minimization step: 4602. Total energy = 4437.2031 kcal/mol (4434.0048 without restraints) Performing minimization step: 4603. Total energy = 4436.8090 kcal/mol (4433.6120 without restraints) Performing minimization step: 4604. Total energy = 4436.4151 kcal/mol (4433.2195 without restraints) Performing minimization step: 4605. Total energy = 4436.0210 kcal/mol (4432.8269 without restraints) Performing minimization step: 4606. Total energy = 4435.6272 kcal/mol (4432.4344 without restraints) Performing minimization step: 4607. Total energy = 4435.2343 kcal/mol (4432.0430 without restraints) Performing minimization step: 4608. Total energy = 4434.8411 kcal/mol (4431.6513 without restraints) Performing minimization step: 4609. Total energy = 4434.4484 kcal/mol (4431.2600 without restraints) Performing minimization step: 4610. Total energy = 4434.0557 kcal/mol (4430.8687 without restraints) Performing minimization step: 4611. Total energy = 4433.6632 kcal/mol (4430.4776 without restraints) Performing minimization step: 4612. Total energy = 4433.2710 kcal/mol (4430.0868 without restraints) Performing minimization step: 4613. Total energy = 4432.8792 kcal/mol (4429.6964 without restraints) Performing minimization step: 4614. Total energy = 4432.4876 kcal/mol (4429.3063 without restraints) Performing minimization step: 4615. Total energy = 4432.0960 kcal/mol (4428.9162 without restraints) Performing minimization step: 4616. Total energy = 4431.7051 kcal/mol (4428.5268 without restraints) Performing minimization step: 4617. Total energy = 4431.3145 kcal/mol (4428.1375 without restraints) Performing minimization step: 4618. Total energy = 4430.9241 kcal/mol (4427.7485 without restraints) Performing minimization step: 4619. Total energy = 4430.5337 kcal/mol (4427.3595 without restraints) Performing minimization step: 4620. Total energy = 4430.1435 kcal/mol (4426.9708 without restraints) Performing minimization step: 4621. Total energy = 4429.7536 kcal/mol (4426.5823 without restraints) Performing minimization step: 4622. Total energy = 4429.3639 kcal/mol (4426.1940 without restraints) Performing minimization step: 4623. Total energy = 4428.9745 kcal/mol (4425.8060 without restraints) Performing minimization step: 4624. Total energy = 4428.5851 kcal/mol (4425.4180 without restraints) Performing minimization step: 4625. Total energy = 4428.1960 kcal/mol (4425.0303 without restraints) Performing minimization step: 4626. Total energy = 4427.8072 kcal/mol (4424.6429 without restraints) Performing minimization step: 4627. Total energy = 4427.4184 kcal/mol (4424.2556 without restraints) Performing minimization step: 4628. Total energy = 4427.0302 kcal/mol (4423.8688 without restraints) Performing minimization step: 4629. Total energy = 4426.6424 kcal/mol (4423.4824 without restraints) Performing minimization step: 4630. Total energy = 4426.2549 kcal/mol (4423.0963 without restraints) Performing minimization step: 4631. Total energy = 4425.8672 kcal/mol (4422.7101 without restraints) Performing minimization step: 4632. Total energy = 4425.4801 kcal/mol (4422.3244 without restraints) Performing minimization step: 4633. Total energy = 4425.0929 kcal/mol (4421.9386 without restraints) Performing minimization step: 4634. Total energy = 4424.7060 kcal/mol (4421.5531 without restraints) Performing minimization step: 4635. Total energy = 4424.3193 kcal/mol (4421.1678 without restraints) Performing minimization step: 4636. Total energy = 4423.9331 kcal/mol (4420.7832 without restraints) Performing minimization step: 4637. Total energy = 4423.5468 kcal/mol (4420.3982 without restraints) Performing minimization step: 4638. Total energy = 4423.1613 kcal/mol (4420.0142 without restraints) Performing minimization step: 4639. Total energy = 4422.7758 kcal/mol (4419.6301 without restraints) Performing minimization step: 4640. Total energy = 4422.3900 kcal/mol (4419.2456 without restraints) Performing minimization step: 4641. Total energy = 4422.0049 kcal/mol (4418.8621 without restraints) Performing minimization step: 4642. Total energy = 4421.6206 kcal/mol (4418.4790 without restraints) Performing minimization step: 4643. Total energy = 4421.2355 kcal/mol (4418.0953 without restraints) Performing minimization step: 4644. Total energy = 4420.8509 kcal/mol (4417.7121 without restraints) Performing minimization step: 4645. Total energy = 4420.4665 kcal/mol (4417.3292 without restraints) Performing minimization step: 4646. Total energy = 4420.0827 kcal/mol (4416.9468 without restraints) Performing minimization step: 4647. Total energy = 4419.6988 kcal/mol (4416.5642 without restraints) Performing minimization step: 4648. Total energy = 4419.3156 kcal/mol (4416.1826 without restraints) Performing minimization step: 4649. Total energy = 4418.9324 kcal/mol (4415.8007 without restraints) Performing minimization step: 4650. Total energy = 4418.5493 kcal/mol (4415.4190 without restraints) Performing minimization step: 4651. Total energy = 4418.1666 kcal/mol (4415.0379 without restraints) Performing minimization step: 4652. Total energy = 4417.7842 kcal/mol (4414.6568 without restraints) Performing minimization step: 4653. Total energy = 4417.4020 kcal/mol (4414.2762 without restraints) Performing minimization step: 4654. Total energy = 4417.0200 kcal/mol (4413.8954 without restraints) Performing minimization step: 4655. Total energy = 4416.6380 kcal/mol (4413.5148 without restraints) Performing minimization step: 4656. Total energy = 4416.2563 kcal/mol (4413.1346 without restraints) Performing minimization step: 4657. Total energy = 4415.8750 kcal/mol (4412.7547 without restraints) Performing minimization step: 4658. Total energy = 4415.4937 kcal/mol (4412.3747 without restraints) Performing minimization step: 4659. Total energy = 4415.1132 kcal/mol (4411.9956 without restraints) Performing minimization step: 4660. Total energy = 4414.7327 kcal/mol (4411.6165 without restraints) Performing minimization step: 4661. Total energy = 4414.3525 kcal/mol (4411.2377 without restraints) Performing minimization step: 4662. Total energy = 4413.9723 kcal/mol (4410.8590 without restraints) Performing minimization step: 4663. Total energy = 4413.5928 kcal/mol (4410.4810 without restraints) Performing minimization step: 4664. Total energy = 4413.2134 kcal/mol (4410.1030 without restraints) Performing minimization step: 4665. Total energy = 4412.8343 kcal/mol (4409.7252 without restraints) Performing minimization step: 4666. Total energy = 4412.4554 kcal/mol (4409.3475 without restraints) Performing minimization step: 4667. Total energy = 4412.0762 kcal/mol (4408.9698 without restraints) Performing minimization step: 4668. Total energy = 4411.6974 kcal/mol (4408.5925 without restraints) Performing minimization step: 4669. Total energy = 4411.3190 kcal/mol (4408.2156 without restraints) Performing minimization step: 4670. Total energy = 4410.9408 kcal/mol (4407.8388 without restraints) Performing minimization step: 4671. Total energy = 4410.5629 kcal/mol (4407.4621 without restraints) Performing minimization step: 4672. Total energy = 4410.1849 kcal/mol (4407.0856 without restraints) Performing minimization step: 4673. Total energy = 4409.8075 kcal/mol (4406.7096 without restraints) Performing minimization step: 4674. Total energy = 4409.4304 kcal/mol (4406.3338 without restraints) Performing minimization step: 4675. Total energy = 4409.0529 kcal/mol (4405.9578 without restraints) Performing minimization step: 4676. Total energy = 4408.6759 kcal/mol (4405.5822 without restraints) Performing minimization step: 4677. Total energy = 4408.2990 kcal/mol (4405.2067 without restraints) Performing minimization step: 4678. Total energy = 4407.9224 kcal/mol (4404.8315 without restraints) Performing minimization step: 4679. Total energy = 4407.5464 kcal/mol (4404.4570 without restraints) Performing minimization step: 4680. Total energy = 4407.1707 kcal/mol (4404.0828 without restraints) Performing minimization step: 4681. Total energy = 4406.7954 kcal/mol (4403.7088 without restraints) Performing minimization step: 4682. Total energy = 4406.4198 kcal/mol (4403.3345 without restraints) Performing minimization step: 4683. Total energy = 4406.0442 kcal/mol (4402.9603 without restraints) Performing minimization step: 4684. Total energy = 4405.6694 kcal/mol (4402.5869 without restraints) Performing minimization step: 4685. Total energy = 4405.2947 kcal/mol (4402.2137 without restraints) Performing minimization step: 4686. Total energy = 4404.9202 kcal/mol (4401.8403 without restraints) Performing minimization step: 4687. Total energy = 4404.5456 kcal/mol (4401.4672 without restraints) Performing minimization step: 4688. Total energy = 4404.1715 kcal/mol (4401.0946 without restraints) Performing minimization step: 4689. Total energy = 4403.7974 kcal/mol (4400.7219 without restraints) Performing minimization step: 4690. Total energy = 4403.4237 kcal/mol (4400.3496 without restraints) Performing minimization step: 4691. Total energy = 4403.0507 kcal/mol (4399.9779 without restraints) Performing minimization step: 4692. Total energy = 4402.6776 kcal/mol (4399.6062 without restraints) Performing minimization step: 4693. Total energy = 4402.3047 kcal/mol (4399.2349 without restraints) Performing minimization step: 4694. Total energy = 4401.9321 kcal/mol (4398.8634 without restraints) Performing minimization step: 4695. Total energy = 4401.5593 kcal/mol (4398.4922 without restraints) Performing minimization step: 4696. Total energy = 4401.1873 kcal/mol (4398.1216 without restraints) Performing minimization step: 4697. Total energy = 4400.8152 kcal/mol (4397.7508 without restraints) Performing minimization step: 4698. Total energy = 4400.4433 kcal/mol (4397.3803 without restraints) Performing minimization step: 4699. Total energy = 4400.0716 kcal/mol (4397.0100 without restraints) Performing minimization step: 4700. Total energy = 4399.7002 kcal/mol (4396.6401 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 4399.3290 kcal/mol (4396.2702 without restraints) Performing minimization step: 4702. Total energy = 4398.9586 kcal/mol (4395.9013 without restraints) Performing minimization step: 4703. Total energy = 4398.5879 kcal/mol (4395.5319 without restraints) Performing minimization step: 4704. Total energy = 4398.2173 kcal/mol (4395.1626 without restraints) Performing minimization step: 4705. Total energy = 4397.8469 kcal/mol (4394.7937 without restraints) Performing minimization step: 4706. Total energy = 4397.4776 kcal/mol (4394.4257 without restraints) Performing minimization step: 4707. Total energy = 4397.1079 kcal/mol (4394.0575 without restraints) Performing minimization step: 4708. Total energy = 4396.7385 kcal/mol (4393.6896 without restraints) Performing minimization step: 4709. Total energy = 4396.3694 kcal/mol (4393.3217 without restraints) Performing minimization step: 4710. Total energy = 4396.0004 kcal/mol (4392.9541 without restraints) Performing minimization step: 4711. Total energy = 4395.6313 kcal/mol (4392.5864 without restraints) Performing minimization step: 4712. Total energy = 4395.2627 kcal/mol (4392.2191 without restraints) Performing minimization step: 4713. Total energy = 4394.8941 kcal/mol (4391.8520 without restraints) Performing minimization step: 4714. Total energy = 4394.5259 kcal/mol (4391.4851 without restraints) Performing minimization step: 4715. Total energy = 4394.1578 kcal/mol (4391.1184 without restraints) Performing minimization step: 4716. Total energy = 4393.7900 kcal/mol (4390.7520 without restraints) Performing minimization step: 4717. Total energy = 4393.4222 kcal/mol (4390.3856 without restraints) Performing minimization step: 4718. Total energy = 4393.0553 kcal/mol (4390.0201 without restraints) Performing minimization step: 4719. Total energy = 4392.6880 kcal/mol (4389.6542 without restraints) Performing minimization step: 4720. Total energy = 4392.3212 kcal/mol (4389.2887 without restraints) Performing minimization step: 4721. Total energy = 4391.9545 kcal/mol (4388.9236 without restraints) Performing minimization step: 4722. Total energy = 4391.5887 kcal/mol (4388.5590 without restraints) Performing minimization step: 4723. Total energy = 4391.2231 kcal/mol (4388.1949 without restraints) Performing minimization step: 4724. Total energy = 4390.8572 kcal/mol (4387.8303 without restraints) Performing minimization step: 4725. Total energy = 4390.4914 kcal/mol (4387.4659 without restraints) Performing minimization step: 4726. Total energy = 4390.1257 kcal/mol (4387.1016 without restraints) Performing minimization step: 4727. Total energy = 4389.7605 kcal/mol (4386.7377 without restraints) Performing minimization step: 4728. Total energy = 4389.3952 kcal/mol (4386.3738 without restraints) Performing minimization step: 4729. Total energy = 4389.0304 kcal/mol (4386.0104 without restraints) Performing minimization step: 4730. Total energy = 4388.6658 kcal/mol (4385.6472 without restraints) Performing minimization step: 4731. Total energy = 4388.3013 kcal/mol (4385.2840 without restraints) Performing minimization step: 4732. Total energy = 4387.9369 kcal/mol (4384.9210 without restraints) Performing minimization step: 4733. Total energy = 4387.5724 kcal/mol (4384.5579 without restraints) Performing minimization step: 4734. Total energy = 4387.2087 kcal/mol (4384.1956 without restraints) Performing minimization step: 4735. Total energy = 4386.8454 kcal/mol (4383.8338 without restraints) Performing minimization step: 4736. Total energy = 4386.4820 kcal/mol (4383.4717 without restraints) Performing minimization step: 4737. Total energy = 4386.1191 kcal/mol (4383.1101 without restraints) Performing minimization step: 4738. Total energy = 4385.7560 kcal/mol (4382.7484 without restraints) Performing minimization step: 4739. Total energy = 4385.3936 kcal/mol (4382.3874 without restraints) Performing minimization step: 4740. Total energy = 4385.0309 kcal/mol (4382.0259 without restraints) Performing minimization step: 4741. Total energy = 4384.6686 kcal/mol (4381.6652 without restraints) Performing minimization step: 4742. Total energy = 4384.3069 kcal/mol (4381.3048 without restraints) Performing minimization step: 4743. Total energy = 4383.9456 kcal/mol (4380.9451 without restraints) Performing minimization step: 4744. Total energy = 4383.5846 kcal/mol (4380.5852 without restraints) Performing minimization step: 4745. Total energy = 4383.2233 kcal/mol (4380.2253 without restraints) Performing minimization step: 4746. Total energy = 4382.8622 kcal/mol (4379.8658 without restraints) Performing minimization step: 4747. Total energy = 4382.5016 kcal/mol (4379.5063 without restraints) Performing minimization step: 4748. Total energy = 4382.1412 kcal/mol (4379.1475 without restraints) Performing minimization step: 4749. Total energy = 4381.7812 kcal/mol (4378.7887 without restraints) Performing minimization step: 4750. Total energy = 4381.4208 kcal/mol (4378.4296 without restraints) Performing minimization step: 4751. Total energy = 4381.0608 kcal/mol (4378.0710 without restraints) Performing minimization step: 4752. Total energy = 4380.7008 kcal/mol (4377.7124 without restraints) Performing minimization step: 4753. Total energy = 4380.3415 kcal/mol (4377.3545 without restraints) Performing minimization step: 4754. Total energy = 4379.9820 kcal/mol (4376.9963 without restraints) Performing minimization step: 4755. Total energy = 4379.6228 kcal/mol (4376.6386 without restraints) Performing minimization step: 4756. Total energy = 4379.2641 kcal/mol (4376.2813 without restraints) Performing minimization step: 4757. Total energy = 4378.9053 kcal/mol (4375.9238 without restraints) Performing minimization step: 4758. Total energy = 4378.5469 kcal/mol (4375.5667 without restraints) Performing minimization step: 4759. Total energy = 4378.1884 kcal/mol (4375.2096 without restraints) Performing minimization step: 4760. Total energy = 4377.8304 kcal/mol (4374.8530 without restraints) Performing minimization step: 4761. Total energy = 4377.4724 kcal/mol (4374.4963 without restraints) Performing minimization step: 4762. Total energy = 4377.1143 kcal/mol (4374.1397 without restraints) Performing minimization step: 4763. Total energy = 4376.7572 kcal/mol (4373.7840 without restraints) Performing minimization step: 4764. Total energy = 4376.3999 kcal/mol (4373.4280 without restraints) Performing minimization step: 4765. Total energy = 4376.0431 kcal/mol (4373.0725 without restraints) Performing minimization step: 4766. Total energy = 4375.6861 kcal/mol (4372.7169 without restraints) Performing minimization step: 4767. Total energy = 4375.3298 kcal/mol (4372.3619 without restraints) Performing minimization step: 4768. Total energy = 4374.9732 kcal/mol (4372.0068 without restraints) Performing minimization step: 4769. Total energy = 4374.6172 kcal/mol (4371.6521 without restraints) Performing minimization step: 4770. Total energy = 4374.2615 kcal/mol (4371.2977 without restraints) Performing minimization step: 4771. Total energy = 4373.9059 kcal/mol (4370.9436 without restraints) Performing minimization step: 4772. Total energy = 4373.5505 kcal/mol (4370.5895 without restraints) Performing minimization step: 4773. Total energy = 4373.1955 kcal/mol (4370.2359 without restraints) Performing minimization step: 4774. Total energy = 4372.8403 kcal/mol (4369.8820 without restraints) Performing minimization step: 4775. Total energy = 4372.4852 kcal/mol (4369.5282 without restraints) Performing minimization step: 4776. Total energy = 4372.1307 kcal/mol (4369.1752 without restraints) Performing minimization step: 4777. Total energy = 4371.7770 kcal/mol (4368.8227 without restraints) Performing minimization step: 4778. Total energy = 4371.4226 kcal/mol (4368.4697 without restraints) Performing minimization step: 4779. Total energy = 4371.0683 kcal/mol (4368.1168 without restraints) Performing minimization step: 4780. Total energy = 4370.7147 kcal/mol (4367.7647 without restraints) Performing minimization step: 4781. Total energy = 4370.3614 kcal/mol (4367.4127 without restraints) Performing minimization step: 4782. Total energy = 4370.0080 kcal/mol (4367.0606 without restraints) Performing minimization step: 4783. Total energy = 4369.6547 kcal/mol (4366.7086 without restraints) Performing minimization step: 4784. Total energy = 4369.3017 kcal/mol (4366.3569 without restraints) Performing minimization step: 4785. Total energy = 4368.9487 kcal/mol (4366.0054 without restraints) Performing minimization step: 4786. Total energy = 4368.5958 kcal/mol (4365.6537 without restraints) Performing minimization step: 4787. Total energy = 4368.2437 kcal/mol (4365.3032 without restraints) Performing minimization step: 4788. Total energy = 4367.8918 kcal/mol (4364.9525 without restraints) Performing minimization step: 4789. Total energy = 4367.5400 kcal/mol (4364.6020 without restraints) Performing minimization step: 4790. Total energy = 4367.1882 kcal/mol (4364.2516 without restraints) Performing minimization step: 4791. Total energy = 4366.8369 kcal/mol (4363.9019 without restraints) Performing minimization step: 4792. Total energy = 4366.4855 kcal/mol (4363.5515 without restraints) Performing minimization step: 4793. Total energy = 4366.1349 kcal/mol (4363.2024 without restraints) Performing minimization step: 4794. Total energy = 4365.7840 kcal/mol (4362.8530 without restraints) Performing minimization step: 4795. Total energy = 4365.4338 kcal/mol (4362.5040 without restraints) Performing minimization step: 4796. Total energy = 4365.0841 kcal/mol (4362.1557 without restraints) Performing minimization step: 4797. Total energy = 4364.7340 kcal/mol (4361.8069 without restraints) Performing minimization step: 4798. Total energy = 4364.3835 kcal/mol (4361.4578 without restraints) Performing minimization step: 4799. Total energy = 4364.0337 kcal/mol (4361.1092 without restraints) Performing minimization step: 4800. Total energy = 4363.6840 kcal/mol (4360.7610 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 4363.3350 kcal/mol (4360.4133 without restraints) Performing minimization step: 4802. Total energy = 4362.9860 kcal/mol (4360.0656 without restraints) Performing minimization step: 4803. Total energy = 4362.6373 kcal/mol (4359.7183 without restraints) Performing minimization step: 4804. Total energy = 4362.2884 kcal/mol (4359.3707 without restraints) Performing minimization step: 4805. Total energy = 4361.9400 kcal/mol (4359.0238 without restraints) Performing minimization step: 4806. Total energy = 4361.5917 kcal/mol (4358.6768 without restraints) Performing minimization step: 4807. Total energy = 4361.2435 kcal/mol (4358.3299 without restraints) Performing minimization step: 4808. Total energy = 4360.8954 kcal/mol (4357.9832 without restraints) Performing minimization step: 4809. Total energy = 4360.5475 kcal/mol (4357.6367 without restraints) Performing minimization step: 4810. Total energy = 4360.2000 kcal/mol (4357.2905 without restraints) Performing minimization step: 4811. Total energy = 4359.8526 kcal/mol (4356.9444 without restraints) Performing minimization step: 4812. Total energy = 4359.5055 kcal/mol (4356.5988 without restraints) Performing minimization step: 4813. Total energy = 4359.1585 kcal/mol (4356.2530 without restraints) Performing minimization step: 4814. Total energy = 4358.8118 kcal/mol (4355.9077 without restraints) Performing minimization step: 4815. Total energy = 4358.4657 kcal/mol (4355.5629 without restraints) Performing minimization step: 4816. Total energy = 4358.1196 kcal/mol (4355.2182 without restraints) Performing minimization step: 4817. Total energy = 4357.7737 kcal/mol (4354.8736 without restraints) Performing minimization step: 4818. Total energy = 4357.4276 kcal/mol (4354.5288 without restraints) Performing minimization step: 4819. Total energy = 4357.0820 kcal/mol (4354.1846 without restraints) Performing minimization step: 4820. Total energy = 4356.7366 kcal/mol (4353.8406 without restraints) Performing minimization step: 4821. Total energy = 4356.3916 kcal/mol (4353.4969 without restraints) Performing minimization step: 4822. Total energy = 4356.0465 kcal/mol (4353.1531 without restraints) Performing minimization step: 4823. Total energy = 4355.7020 kcal/mol (4352.8099 without restraints) Performing minimization step: 4824. Total energy = 4355.3576 kcal/mol (4352.4668 without restraints) Performing minimization step: 4825. Total energy = 4355.0140 kcal/mol (4352.1248 without restraints) Performing minimization step: 4826. Total energy = 4354.6700 kcal/mol (4351.7820 without restraints) Performing minimization step: 4827. Total energy = 4354.3262 kcal/mol (4351.4395 without restraints) Performing minimization step: 4828. Total energy = 4353.9823 kcal/mol (4351.0969 without restraints) Performing minimization step: 4829. Total energy = 4353.6386 kcal/mol (4350.7545 without restraints) Performing minimization step: 4830. Total energy = 4353.2954 kcal/mol (4350.4128 without restraints) Performing minimization step: 4831. Total energy = 4352.9523 kcal/mol (4350.0709 without restraints) Performing minimization step: 4832. Total energy = 4352.6094 kcal/mol (4349.7294 without restraints) Performing minimization step: 4833. Total energy = 4352.2670 kcal/mol (4349.3883 without restraints) Performing minimization step: 4834. Total energy = 4351.9243 kcal/mol (4349.0470 without restraints) Performing minimization step: 4835. Total energy = 4351.5821 kcal/mol (4348.7061 without restraints) Performing minimization step: 4836. Total energy = 4351.2402 kcal/mol (4348.3655 without restraints) Performing minimization step: 4837. Total energy = 4350.8988 kcal/mol (4348.0254 without restraints) Performing minimization step: 4838. Total energy = 4350.5570 kcal/mol (4347.6850 without restraints) Performing minimization step: 4839. Total energy = 4350.2158 kcal/mol (4347.3453 without restraints) Performing minimization step: 4840. Total energy = 4349.8746 kcal/mol (4347.0053 without restraints) Performing minimization step: 4841. Total energy = 4349.5332 kcal/mol (4346.6653 without restraints) Performing minimization step: 4842. Total energy = 4349.1925 kcal/mol (4346.3259 without restraints) Performing minimization step: 4843. Total energy = 4348.8522 kcal/mol (4345.9871 without restraints) Performing minimization step: 4844. Total energy = 4348.5121 kcal/mol (4345.6481 without restraints) Performing minimization step: 4845. Total energy = 4348.1717 kcal/mol (4345.3091 without restraints) Performing minimization step: 4846. Total energy = 4347.8317 kcal/mol (4344.9704 without restraints) Performing minimization step: 4847. Total energy = 4347.4918 kcal/mol (4344.6318 without restraints) Performing minimization step: 4848. Total energy = 4347.1520 kcal/mol (4344.2933 without restraints) Performing minimization step: 4849. Total energy = 4346.8130 kcal/mol (4343.9558 without restraints) Performing minimization step: 4850. Total energy = 4346.4737 kcal/mol (4343.6177 without restraints) Performing minimization step: 4851. Total energy = 4346.1346 kcal/mol (4343.2798 without restraints) Performing minimization step: 4852. Total energy = 4345.7958 kcal/mol (4342.9425 without restraints) Performing minimization step: 4853. Total energy = 4345.4571 kcal/mol (4342.6050 without restraints) Performing minimization step: 4854. Total energy = 4345.1186 kcal/mol (4342.2680 without restraints) Performing minimization step: 4855. Total energy = 4344.7805 kcal/mol (4341.9312 without restraints) Performing minimization step: 4856. Total energy = 4344.4424 kcal/mol (4341.5943 without restraints) Performing minimization step: 4857. Total energy = 4344.1044 kcal/mol (4341.2577 without restraints) Performing minimization step: 4858. Total energy = 4343.7669 kcal/mol (4340.9215 without restraints) Performing minimization step: 4859. Total energy = 4343.4295 kcal/mol (4340.5855 without restraints) Performing minimization step: 4860. Total energy = 4343.0922 kcal/mol (4340.2494 without restraints) Performing minimization step: 4861. Total energy = 4342.7550 kcal/mol (4339.9136 without restraints) Performing minimization step: 4862. Total energy = 4342.4181 kcal/mol (4339.5781 without restraints) Performing minimization step: 4863. Total energy = 4342.0817 kcal/mol (4339.2429 without restraints) Performing minimization step: 4864. Total energy = 4341.7456 kcal/mol (4338.9080 without restraints) Performing minimization step: 4865. Total energy = 4341.4095 kcal/mol (4338.5734 without restraints) Performing minimization step: 4866. Total energy = 4341.0733 kcal/mol (4338.2385 without restraints) Performing minimization step: 4867. Total energy = 4340.7375 kcal/mol (4337.9041 without restraints) Performing minimization step: 4868. Total energy = 4340.4016 kcal/mol (4337.5695 without restraints) Performing minimization step: 4869. Total energy = 4340.0661 kcal/mol (4337.2353 without restraints) Performing minimization step: 4870. Total energy = 4339.7306 kcal/mol (4336.9011 without restraints) Performing minimization step: 4871. Total energy = 4339.3956 kcal/mol (4336.5676 without restraints) Performing minimization step: 4872. Total energy = 4339.0608 kcal/mol (4336.2339 without restraints) Performing minimization step: 4873. Total energy = 4338.7262 kcal/mol (4335.9006 without restraints) Performing minimization step: 4874. Total energy = 4338.3917 kcal/mol (4335.5674 without restraints) Performing minimization step: 4875. Total energy = 4338.0578 kcal/mol (4335.2348 without restraints) Performing minimization step: 4876. Total energy = 4337.7242 kcal/mol (4334.9026 without restraints) Performing minimization step: 4877. Total energy = 4337.3902 kcal/mol (4334.5699 without restraints) Performing minimization step: 4878. Total energy = 4337.0565 kcal/mol (4334.2377 without restraints) Performing minimization step: 4879. Total energy = 4336.7233 kcal/mol (4333.9057 without restraints) Performing minimization step: 4880. Total energy = 4336.3903 kcal/mol (4333.5741 without restraints) Performing minimization step: 4881. Total energy = 4336.0575 kcal/mol (4333.2425 without restraints) Performing minimization step: 4882. Total energy = 4335.7243 kcal/mol (4332.9106 without restraints) Performing minimization step: 4883. Total energy = 4335.3918 kcal/mol (4332.5795 without restraints) Performing minimization step: 4884. Total energy = 4335.0596 kcal/mol (4332.2485 without restraints) Performing minimization step: 4885. Total energy = 4334.7272 kcal/mol (4331.9174 without restraints) Performing minimization step: 4886. Total energy = 4334.3950 kcal/mol (4331.5865 without restraints) Performing minimization step: 4887. Total energy = 4334.0632 kcal/mol (4331.2560 without restraints) Performing minimization step: 4888. Total energy = 4333.7316 kcal/mol (4330.9258 without restraints) Performing minimization step: 4889. Total energy = 4333.4000 kcal/mol (4330.5955 without restraints) Performing minimization step: 4890. Total energy = 4333.0686 kcal/mol (4330.2654 without restraints) Performing minimization step: 4891. Total energy = 4332.7377 kcal/mol (4329.9359 without restraints) Performing minimization step: 4892. Total energy = 4332.4072 kcal/mol (4329.6068 without restraints) Performing minimization step: 4893. Total energy = 4332.0766 kcal/mol (4329.2773 without restraints) Performing minimization step: 4894. Total energy = 4331.7462 kcal/mol (4328.9483 without restraints) Performing minimization step: 4895. Total energy = 4331.4158 kcal/mol (4328.6191 without restraints) Performing minimization step: 4896. Total energy = 4331.0855 kcal/mol (4328.2902 without restraints) Performing minimization step: 4897. Total energy = 4330.7560 kcal/mol (4327.9620 without restraints) Performing minimization step: 4898. Total energy = 4330.4263 kcal/mol (4327.6335 without restraints) Performing minimization step: 4899. Total energy = 4330.0963 kcal/mol (4327.3049 without restraints) Performing minimization step: 4900. Total energy = 4329.7668 kcal/mol (4326.9767 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 4329.4376 kcal/mol (4326.6488 without restraints) Performing minimization step: 4902. Total energy = 4329.1088 kcal/mol (4326.3213 without restraints) Performing minimization step: 4903. Total energy = 4328.7802 kcal/mol (4325.9940 without restraints) Performing minimization step: 4904. Total energy = 4328.4516 kcal/mol (4325.6667 without restraints) Performing minimization step: 4905. Total energy = 4328.1234 kcal/mol (4325.3397 without restraints) Performing minimization step: 4906. Total energy = 4327.7953 kcal/mol (4325.0130 without restraints) Performing minimization step: 4907. Total energy = 4327.4675 kcal/mol (4324.6867 without restraints) Performing minimization step: 4908. Total energy = 4327.1397 kcal/mol (4324.3601 without restraints) Performing minimization step: 4909. Total energy = 4326.8120 kcal/mol (4324.0337 without restraints) Performing minimization step: 4910. Total energy = 4326.4849 kcal/mol (4323.7079 without restraints) Performing minimization step: 4911. Total energy = 4326.1577 kcal/mol (4323.3820 without restraints) Performing minimization step: 4912. Total energy = 4325.8311 kcal/mol (4323.0566 without restraints) Performing minimization step: 4913. Total energy = 4325.5049 kcal/mol (4322.7320 without restraints) Performing minimization step: 4914. Total energy = 4325.1785 kcal/mol (4322.4066 without restraints) Performing minimization step: 4915. Total energy = 4324.8520 kcal/mol (4322.0816 without restraints) Performing minimization step: 4916. Total energy = 4324.5263 kcal/mol (4321.7571 without restraints) Performing minimization step: 4917. Total energy = 4324.2004 kcal/mol (4321.4323 without restraints) Performing minimization step: 4918. Total energy = 4323.8746 kcal/mol (4321.1080 without restraints) Performing minimization step: 4919. Total energy = 4323.5490 kcal/mol (4320.7838 without restraints) Performing minimization step: 4920. Total energy = 4323.2235 kcal/mol (4320.4595 without restraints) Performing minimization step: 4921. Total energy = 4322.8983 kcal/mol (4320.1355 without restraints) Performing minimization step: 4922. Total energy = 4322.5733 kcal/mol (4319.8119 without restraints) Performing minimization step: 4923. Total energy = 4322.2487 kcal/mol (4319.4886 without restraints) Performing minimization step: 4924. Total energy = 4321.9242 kcal/mol (4319.1654 without restraints) Performing minimization step: 4925. Total energy = 4321.5999 kcal/mol (4318.8423 without restraints) Performing minimization step: 4926. Total energy = 4321.2756 kcal/mol (4318.5194 without restraints) Performing minimization step: 4927. Total energy = 4320.9516 kcal/mol (4318.1967 without restraints) Performing minimization step: 4928. Total energy = 4320.6279 kcal/mol (4317.8743 without restraints) Performing minimization step: 4929. Total energy = 4320.3042 kcal/mol (4317.5520 without restraints) Performing minimization step: 4930. Total energy = 4319.9808 kcal/mol (4317.2298 without restraints) Performing minimization step: 4931. Total energy = 4319.6579 kcal/mol (4316.9082 without restraints) Performing minimization step: 4932. Total energy = 4319.3349 kcal/mol (4316.5864 without restraints) Performing minimization step: 4933. Total energy = 4319.0119 kcal/mol (4316.2647 without restraints) Performing minimization step: 4934. Total energy = 4318.6892 kcal/mol (4315.9434 without restraints) Performing minimization step: 4935. Total energy = 4318.3667 kcal/mol (4315.6222 without restraints) Performing minimization step: 4936. Total energy = 4318.0445 kcal/mol (4315.3012 without restraints) Performing minimization step: 4937. Total energy = 4317.7223 kcal/mol (4314.9801 without restraints) Performing minimization step: 4938. Total energy = 4317.4000 kcal/mol (4314.6593 without restraints) Performing minimization step: 4939. Total energy = 4317.0783 kcal/mol (4314.3388 without restraints) Performing minimization step: 4940. Total energy = 4316.7563 kcal/mol (4314.0182 without restraints) Performing minimization step: 4941. Total energy = 4316.4349 kcal/mol (4313.6980 without restraints) Performing minimization step: 4942. Total energy = 4316.1140 kcal/mol (4313.3784 without restraints) Performing minimization step: 4943. Total energy = 4315.7931 kcal/mol (4313.0590 without restraints) Performing minimization step: 4944. Total energy = 4315.4728 kcal/mol (4312.7398 without restraints) Performing minimization step: 4945. Total energy = 4315.1522 kcal/mol (4312.4205 without restraints) Performing minimization step: 4946. Total energy = 4314.8319 kcal/mol (4312.1014 without restraints) Performing minimization step: 4947. Total energy = 4314.5117 kcal/mol (4311.7825 without restraints) Performing minimization step: 4948. Total energy = 4314.1917 kcal/mol (4311.4638 without restraints) Performing minimization step: 4949. Total energy = 4313.8719 kcal/mol (4311.1453 without restraints) Performing minimization step: 4950. Total energy = 4313.5522 kcal/mol (4310.8270 without restraints) Performing minimization step: 4951. Total energy = 4313.2326 kcal/mol (4310.5087 without restraints) Performing minimization step: 4952. Total energy = 4312.9131 kcal/mol (4310.1904 without restraints) Performing minimization step: 4953. Total energy = 4312.5941 kcal/mol (4309.8725 without restraints) Performing minimization step: 4954. Total energy = 4312.2754 kcal/mol (4309.5552 without restraints) Performing minimization step: 4955. Total energy = 4311.9571 kcal/mol (4309.2383 without restraints) Performing minimization step: 4956. Total energy = 4311.6392 kcal/mol (4308.9218 without restraints) Performing minimization step: 4957. Total energy = 4311.3210 kcal/mol (4308.6047 without restraints) Performing minimization step: 4958. Total energy = 4311.0030 kcal/mol (4308.2880 without restraints) Performing minimization step: 4959. Total energy = 4310.6849 kcal/mol (4307.9712 without restraints) Performing minimization step: 4960. Total energy = 4310.3668 kcal/mol (4307.6543 without restraints) Performing minimization step: 4961. Total energy = 4310.0491 kcal/mol (4307.3379 without restraints) Performing minimization step: 4962. Total energy = 4309.7316 kcal/mol (4307.0217 without restraints) Performing minimization step: 4963. Total energy = 4309.4142 kcal/mol (4306.7056 without restraints) Performing minimization step: 4964. Total energy = 4309.0974 kcal/mol (4306.3901 without restraints) Performing minimization step: 4965. Total energy = 4308.7807 kcal/mol (4306.0745 without restraints) Performing minimization step: 4966. Total energy = 4308.4639 kcal/mol (4305.7593 without restraints) Performing minimization step: 4967. Total energy = 4308.1475 kcal/mol (4305.4442 without restraints) Performing minimization step: 4968. Total energy = 4307.8314 kcal/mol (4305.1292 without restraints) Performing minimization step: 4969. Total energy = 4307.5153 kcal/mol (4304.8144 without restraints) Performing minimization step: 4970. Total energy = 4307.1992 kcal/mol (4304.4995 without restraints) Performing minimization step: 4971. Total energy = 4306.8838 kcal/mol (4304.1856 without restraints) Performing minimization step: 4972. Total energy = 4306.5684 kcal/mol (4303.8714 without restraints) Performing minimization step: 4973. Total energy = 4306.2534 kcal/mol (4303.5575 without restraints) Performing minimization step: 4974. Total energy = 4305.9379 kcal/mol (4303.2435 without restraints) Performing minimization step: 4975. Total energy = 4305.6229 kcal/mol (4302.9296 without restraints) Performing minimization step: 4976. Total energy = 4305.3082 kcal/mol (4302.6162 without restraints) Performing minimization step: 4977. Total energy = 4304.9939 kcal/mol (4302.3032 without restraints) Performing minimization step: 4978. Total energy = 4304.6793 kcal/mol (4301.9898 without restraints) Performing minimization step: 4979. Total energy = 4304.3651 kcal/mol (4301.6769 without restraints) Performing minimization step: 4980. Total energy = 4304.0514 kcal/mol (4301.3646 without restraints) Performing minimization step: 4981. Total energy = 4303.7373 kcal/mol (4301.0517 without restraints) Performing minimization step: 4982. Total energy = 4303.4235 kcal/mol (4300.7391 without restraints) Performing minimization step: 4983. Total energy = 4303.1097 kcal/mol (4300.4266 without restraints) Performing minimization step: 4984. Total energy = 4302.7965 kcal/mol (4300.1147 without restraints) Performing minimization step: 4985. Total energy = 4302.4836 kcal/mol (4299.8031 without restraints) Performing minimization step: 4986. Total energy = 4302.1708 kcal/mol (4299.4916 without restraints) Performing minimization step: 4987. Total energy = 4301.8578 kcal/mol (4299.1798 without restraints) Performing minimization step: 4988. Total energy = 4301.5451 kcal/mol (4298.8683 without restraints) Performing minimization step: 4989. Total energy = 4301.2327 kcal/mol (4298.5573 without restraints) Performing minimization step: 4990. Total energy = 4300.9205 kcal/mol (4298.2463 without restraints) Performing minimization step: 4991. Total energy = 4300.6088 kcal/mol (4297.9359 without restraints) Performing minimization step: 4992. Total energy = 4300.2969 kcal/mol (4297.6251 without restraints) Performing minimization step: 4993. Total energy = 4299.9851 kcal/mol (4297.3146 without restraints) Performing minimization step: 4994. Total energy = 4299.6734 kcal/mol (4297.0042 without restraints) Performing minimization step: 4995. Total energy = 4299.3619 kcal/mol (4296.6940 without restraints) Performing minimization step: 4996. Total energy = 4299.0507 kcal/mol (4296.3840 without restraints) Performing minimization step: 4997. Total energy = 4298.7405 kcal/mol (4296.0750 without restraints) Performing minimization step: 4998. Total energy = 4298.4298 kcal/mol (4295.7657 without restraints) Performing minimization step: 4999. Total energy = 4298.1193 kcal/mol (4295.4565 without restraints) Performing minimization step: 5000. Total energy = 4297.8088 kcal/mol (4295.1472 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/9616ce0f/tmp/CPMA6_refx/CPMA6_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to CPMA6_refx.pdb DONE!