# http://rna-tools.online/tools/minmd/966fedae
source ~/.env
rm log.txt
echo 'OpenMM does not give progress for minimization, just wait...' > log.txt 
time python /home/ubuntu/rna-tools/rna_tools/tools/md/rna_minimize.py -sp *.pdb &>> log.txt
echo 'DONE!' >> log.txt