============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2.pdb ============================================================================= Error: recognition of atom ATOM 19 'H5' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 20 'HO5 DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 24 1H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 25 2H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 47 C5M DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 51 HN3 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 52 1HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 53 2HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 54 3HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 81 'H5' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 85 1H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 86 2H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 114 'H5' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 118 1H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 119 2H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 144 'H5' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 148 1H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 149 2H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 176 'H5' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 180 1H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 181 2H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 203 C5M DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 207 HN3 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 208 1HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 209 2HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 210 3HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 238 'H5' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 242 1H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 243 2H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 270 'H5' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 274 1H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 275 2H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 302 'H5' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 306 1H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 307 2H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 329 C5M DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 333 HN3 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 334 1HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 335 2HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 336 3HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 358 C5M DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 362 HN3 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 363 1HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 364 2HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 365 3HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 390 'H5' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 394 1H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 395 2H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 420 'H5' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 424 1H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 425 2H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 450 'H5' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 454 1H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 455 2H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 483 'H5' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 487 1H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 488 2H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 515 'H5' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 519 1H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 520 2H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 547 'H5' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 551 1H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 552 2H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 580 'H5' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 584 1H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 585 2H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 612 'H5' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 616 1H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 617 2H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 642 'H5' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 646 1H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 647 2H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 675 'H5' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 679 1H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 680 2H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 705 'H5' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 709 1H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 710 2H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 735 'H5' DC A 24 ... failed. Atom erased. Error: recognition of atom ATOM 739 1H2' DC A 24 ... failed. Atom erased. Error: recognition of atom ATOM 740 2H2' DC A 24 ... failed. Atom erased. Error: recognition of atom ATOM 765 'H5' DC A 25 ... failed. Atom erased. Error: recognition of atom ATOM 769 1H2' DC A 25 ... failed. Atom erased. Error: recognition of atom ATOM 770 2H2' DC A 25 ... failed. Atom erased. Error: recognition of atom ATOM 797 'H5' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 801 1H2' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 802 2H2' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 829 'H5' DA A 27 ... failed. Atom erased. Error: recognition of atom ATOM 833 1H2' DA A 27 ... failed. Atom erased. Error: recognition of atom ATOM 834 2H2' DA A 27 ... failed. Atom erased. Error: recognition of atom ATOM 856 C5M DT A 28 ... failed. Atom erased. Error: recognition of atom ATOM 860 HN3 DT A 28 ... failed. Atom erased. Error: recognition of atom ATOM 861 1HM5 DT A 28 ... failed. Atom erased. Error: recognition of atom ATOM 862 2HM5 DT A 28 ... failed. Atom erased. Error: recognition of atom ATOM 863 3HM5 DT A 28 ... failed. Atom erased. Error: recognition of atom ATOM 888 'H5' DC A 29 ... failed. Atom erased. Error: recognition of atom ATOM 892 1H2' DC A 29 ... failed. Atom erased. Error: recognition of atom ATOM 893 2H2' DC A 29 ... failed. Atom erased. Error: recognition of atom ATOM 920 'H5' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 924 1H2' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 925 2H2' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 952 'H5' DA A 31 ... failed. Atom erased. Error: recognition of atom ATOM 956 1H2' DA A 31 ... failed. Atom erased. Error: recognition of atom ATOM 957 2H2' DA A 31 ... failed. Atom erased. Error: recognition of atom ATOM 984 'H5' DA A 32 ... failed. Atom erased. Error: recognition of atom ATOM 988 1H2' DA A 32 ... failed. Atom erased. Error: recognition of atom ATOM 989 2H2' DA A 32 ... failed. Atom erased. Error: recognition of atom ATOM 1011 C5M DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1015 HN3 DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1016 1HM5 DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1017 2HM5 DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1018 3HM5 DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1045 'H5' DA A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1049 1H2' DA A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1050 2H2' DA A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1078 'H5' DG A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1082 1H2' DG A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1083 2H2' DG A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1105 C5M DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1109 HN3 DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1110 1HM5 DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1111 2HM5 DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1112 3HM5 DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1140 'H5' DG A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1144 1H2' DG A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1145 2H2' DG A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1167 C5M DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1171 HN3 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1172 1HM5 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1173 2HM5 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1174 3HM5 DT A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1199 'H5' DC A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1203 1H2' DC A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1204 2H2' DC A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1231 'H5' DA A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1235 1H2' DA A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1236 2H2' DA A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1261 'H5' DC A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1265 1H2' DC A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1266 2H2' DC A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1293 'H5' DA A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1297 1H2' DA A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1298 2H2' DA A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1325 'H5' DA A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1329 1H2' DA A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1330 2H2' DA A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1355 'H5' DC A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1359 1H2' DC A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1360 2H2' DC A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1387 'H5' DA A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1391 1H2' DA A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1392 2H2' DA A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1417 'H5' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1421 1H2' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1422 2H2' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1444 C5M DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1448 HN3 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1449 1HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1450 2HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1451 3HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1476 'H5' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1480 1H2' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1481 2H2' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1506 'H5' DC A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1510 1H2' DC A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1511 2H2' DC A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1536 'H5' DC A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1540 1H2' DC A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1541 2H2' DC A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1563 C5M DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1567 HN3 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1568 1HM5 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1569 2HM5 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1570 3HM5 DT A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1595 'H5' DC A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1599 1H2' DC A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1600 2H2' DC A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1625 'H5' DC A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1629 1H2' DC A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1630 2H2' DC A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1657 'H5' DA A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1661 1H2' DA A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1662 2H2' DA A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1689 'H5' DA A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1693 1H2' DA A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1694 2H2' DA A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1721 'H5' DA A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1725 1H2' DA A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1726 2H2' DA A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1748 C5M DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1752 HN3 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1753 1HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1754 2HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1755 3HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1777 C5M DT A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1781 HN3 DT A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1782 1HM5 DT A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1783 2HM5 DT A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1784 3HM5 DT A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1806 C5M DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1810 HN3 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1811 1HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1812 2HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1813 3HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1838 'H5' DC A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1842 1H2' DC A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1843 2H2' DC A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1870 'H5' DA A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1874 1H2' DA A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1875 2H2' DA A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1903 'H5' DG A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1907 1H2' DG A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1908 2H2' DG A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1936 'H5' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1940 1H2' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1941 2H2' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1969 'H5' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1973 1H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1974 2H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1996 C5M DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2000 HN3 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2001 1HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2002 2HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2003 3HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2028 'H5' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2032 1H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2033 2H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2061 'H5' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2065 1H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2066 2H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2093 'H5' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2097 1H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2098 2H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2123 'H5' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2127 1H2' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2128 2H2' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2156 'H5' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2160 1H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2161 2H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2188 'H5' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2192 1H2' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2193 2H2' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2221 'H5' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2225 1H2' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2226 2H2' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2254 'H5' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2258 1H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2259 2H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2281 C5M DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2285 HN3 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2286 1HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2287 2HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2288 3HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2313 'H5' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2317 1H2' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2318 2H2' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2340 C5M DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2344 HN3 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2345 1HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2346 2HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2347 3HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2374 'H5' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2378 1H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2379 2H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2407 'H5' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2411 1H2' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2412 2H2' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2439 'H5' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2443 1H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2444 2H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2471 'H5' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2475 1H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2476 2H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2498 C5M DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2502 HN3 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2503 1HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2504 2HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2505 3HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2532 'H5' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2536 1H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2537 2H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2562 'H5' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2566 1H2' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2567 2H2' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2592 'H5' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2596 1H2' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2597 2H2' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2624 'H5' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2628 1H2' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2629 2H2' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2657 'H5' DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2658 'HO3 DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2662 1H2' DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2663 2H2' DG A 86 ... failed. Atom erased. Missing atom added: HETATM 1 P DA A 1 0.420 0.559 -2.674 1.00 0.00 P Missing atom added: HETATM 24 H5'2 DA A 1 1.883 -0.985 -0.648 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 1 2.181 -0.170 3.677 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 1 0.184 -0.102 3.753 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 2 0.099 -3.943 4.635 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 2 -3.698 -2.607 6.763 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 2 -3.534 -4.154 7.585 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 2 -6.860 -0.269 4.487 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 2 -3.655 -1.639 1.533 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 2 -3.381 -0.671 1.105 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 2 -4.422 -2.102 0.903 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 2 -2.772 -2.284 1.542 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 3 -4.478 -7.290 7.496 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 3 -8.482 -5.852 8.634 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 3 -8.967 -6.118 6.712 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 4 -10.165 -9.651 6.945 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 4 -13.764 -7.642 5.477 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 4 -13.148 -8.218 3.664 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 5 -15.297 -11.262 3.259 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 5 -16.948 -9.542 -0.493 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 5 -15.250 -10.261 -1.265 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 6 -16.643 -13.592 -2.240 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 6 -15.516 -11.941 -6.152 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 6 -13.759 -12.860 -5.891 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 7 -15.110 -15.994 -7.600 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 7 -10.527 -15.111 -8.240 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 7 -10.678 -16.162 -9.642 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 7 -7.667 -14.221 -4.948 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 7 -11.499 -15.957 -3.157 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 7 -11.740 -15.130 -2.488 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 7 -10.922 -16.706 -2.610 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 7 -12.424 -16.409 -3.516 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 8 -10.307 -19.388 -10.618 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 8 -5.986 -18.849 -10.558 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 8 -6.034 -19.795 -8.797 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 9 -5.480 -23.307 -9.851 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 9 -2.191 -23.060 -7.157 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 9 -3.448 -23.736 -5.756 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 10 -2.732 -27.400 -6.162 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 10 -1.341 -26.793 -2.044 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 10 -3.219 -27.187 -1.484 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 11 -2.448 -30.860 -1.267 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 11 -5.583 -29.251 1.873 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 11 -5.100 -30.636 2.844 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 11 -9.253 -26.915 0.684 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 11 -7.562 -29.153 -2.957 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 11 -7.548 -28.291 -3.623 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 11 -8.496 -29.702 -3.093 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 11 -6.723 -29.807 -3.195 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 12 -5.415 -33.816 3.860 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 12 -9.702 -32.294 3.390 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 12 -10.136 -33.462 4.632 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 12 -12.257 -30.633 0.515 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 12 -8.347 -31.957 -1.507 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 12 -8.092 -30.998 -1.976 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 12 -8.897 -32.564 -2.241 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 12 -7.414 -32.479 -1.262 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 13 -11.013 -36.921 5.248 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 13 -15.166 -35.716 4.341 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 13 -14.794 -36.326 2.474 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 14 -16.059 -40.182 3.556 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 14 -19.635 -39.783 1.083 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 14 -18.456 -40.267 -0.457 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 15 -18.802 -44.155 -0.730 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 15 -18.232 -43.206 -5.199 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 15 -16.279 -43.520 -4.911 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 16 -17.144 -46.969 -6.351 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 16 -15.166 -46.046 -10.216 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 16 -13.526 -46.379 -9.123 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 17 -13.117 -50.028 -9.889 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 17 -9.266 -48.884 -11.384 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 17 -8.647 -49.151 -9.501 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 18 -9.549 -52.423 -6.989 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 18 -5.326 -53.834 -5.512 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 18 -4.534 -52.438 -6.703 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 19 -3.854 -49.218 -4.499 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 19 -0.334 -48.539 -7.299 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 19 -1.626 -47.554 -8.463 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 20 -0.478 -44.383 -7.337 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 20 0.430 -43.629 -11.738 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 20 -1.376 -42.773 -11.679 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 21 -2.716 -40.508 -9.798 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 21 -5.501 -40.807 -11.548 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 21 -6.261 -40.532 -9.720 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 22 -6.491 -37.550 -12.505 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 22 -10.111 -40.567 -12.996 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 22 -10.996 -39.600 -11.486 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 23 -13.586 -37.790 -13.658 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 23 -17.017 -38.902 -11.105 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 23 -16.281 -37.552 -9.828 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 24 -17.516 -33.536 -11.891 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 24 -18.224 -32.284 -7.602 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 24 -16.320 -31.695 -7.452 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 25 -16.420 -28.685 -12.476 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 25 -13.224 -30.550 -11.361 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 25 -14.702 -31.818 -11.813 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 26 -13.684 -28.749 -15.583 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 26 -17.319 -27.400 -17.007 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 26 -17.310 -27.750 -15.039 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 27 -13.541 -25.145 -15.873 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 27 -10.487 -26.409 -13.374 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 27 -11.580 -27.869 -14.191 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 28 -9.144 -26.003 -18.234 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 28 -7.751 -28.798 -18.043 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 28 -6.652 -29.516 -19.214 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 28 -3.009 -25.624 -19.628 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 28 -5.756 -24.604 -16.107 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 28 -5.907 -23.545 -16.330 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 28 -4.932 -24.704 -15.394 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 28 -6.666 -25.005 -15.655 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 29 -10.979 -29.032 -24.038 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 29 -14.332 -26.461 -23.905 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 29 -13.135 -24.898 -23.559 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 30 -10.387 -28.357 -28.237 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 30 -12.670 -30.205 -31.894 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 30 -14.070 -31.224 -30.895 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 31 -17.397 -28.210 -29.340 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 31 -19.825 -32.142 -28.013 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 31 -19.298 -31.633 -26.152 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 32 -19.153 -26.267 -26.427 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 32 -16.783 -27.693 -23.661 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 32 -16.416 -28.339 -25.517 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 33 -18.583 -22.400 -24.746 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 33 -14.532 -21.036 -22.071 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 33 -15.250 -19.456 -21.782 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 33 -10.307 -21.350 -22.614 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 33 -12.615 -22.430 -26.421 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 33 -12.041 -23.335 -26.634 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 33 -12.201 -21.601 -27.005 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 33 -13.653 -22.590 -26.724 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 34 -16.583 -16.397 -21.961 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 34 -12.428 -15.383 -20.100 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 34 -11.970 -14.701 -21.923 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 35 -13.137 -11.131 -20.165 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 35 -9.281 -9.105 -20.269 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 35 -9.860 -8.583 -22.111 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 36 -11.642 -5.337 -21.234 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 36 -9.880 -5.414 -25.609 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 36 -10.015 -3.662 -25.535 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 36 -10.729 -8.231 -28.783 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 36 -13.613 -8.960 -25.277 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 36 -13.523 -10.045 -25.265 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 36 -14.473 -8.673 -25.885 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 36 -13.755 -8.597 -24.259 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 37 -12.550 -0.733 -25.920 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 37 -11.071 -0.178 -30.014 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 37 -12.480 -1.508 -30.511 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 38 -15.894 1.535 -31.036 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 38 -16.657 -1.629 -34.116 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 38 -18.085 -0.677 -34.501 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 38 -17.203 -5.781 -33.009 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 38 -15.484 -3.324 -29.482 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 38 -14.766 -4.069 -29.155 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 38 -16.408 -3.424 -28.919 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 38 -15.074 -2.328 -29.347 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 39 -21.273 0.273 -33.585 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 39 -22.274 -3.377 -36.083 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 39 -22.447 -4.288 -34.313 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 40 -24.202 -2.805 -30.810 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 40 -27.397 -6.183 -29.707 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 40 -26.938 -7.228 -31.348 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 41 -24.199 -9.842 -29.827 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 41 -26.500 -12.731 -32.726 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 41 -25.200 -12.140 -34.123 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 42 -22.656 -15.441 -33.232 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 42 -22.611 -15.686 -37.511 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 42 -21.020 -14.476 -37.493 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 43 -18.539 -14.660 -35.776 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 43 -18.146 -12.091 -38.296 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 43 -16.894 -11.225 -36.999 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 44 -13.513 -12.223 -38.736 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 44 -11.715 -8.293 -39.199 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 44 -10.886 -8.844 -37.466 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 45 -7.474 -10.692 -38.051 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 45 -5.285 -8.119 -35.474 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 45 -5.765 -9.431 -34.044 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 46 -2.470 -11.651 -34.440 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 46 -2.389 -10.123 -30.112 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 46 -3.628 -11.621 -29.647 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 47 -0.418 -13.926 -28.444 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 47 -3.578 -15.395 -25.436 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 47 -2.215 -16.259 -24.737 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 47 -7.519 -16.699 -26.781 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 47 -5.070 -15.676 -30.508 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 47 -5.803 -15.045 -31.005 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 47 -5.165 -16.701 -30.866 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 47 -4.068 -15.308 -30.718 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 48 -0.623 -19.334 -24.969 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 48 -4.376 -21.531 -23.539 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 48 -4.518 -22.103 -25.450 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 49 -2.551 -25.028 -26.658 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 49 -5.680 -26.793 -26.092 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 49 -5.669 -26.489 -28.068 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 50 -2.923 -30.307 -29.545 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 50 -5.874 -30.444 -30.123 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 50 -5.677 -29.437 -31.839 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 51 -3.385 -33.558 -34.237 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 51 -3.793 -30.668 -37.984 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 51 -3.485 -32.094 -38.968 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 51 -2.337 -26.582 -38.320 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 51 -0.897 -28.541 -34.366 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 51 -1.124 -27.701 -33.714 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 51 0.147 -28.494 -34.675 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 51 -1.078 -29.474 -33.836 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 52 -0.846 -34.697 -40.590 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 52 -0.782 -33.550 -44.798 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 52 0.675 -32.366 -44.112 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 53 3.500 -35.110 -45.215 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 53 4.834 -33.570 -49.034 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 53 5.459 -32.066 -47.875 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 54 4.975 -35.464 -44.730 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 54 7.180 -39.334 -44.310 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 54 8.595 -38.388 -45.358 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 55 11.613 -35.550 -44.269 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 55 11.240 -37.518 -48.030 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 55 9.542 -36.748 -47.306 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 56 11.562 -32.063 -45.756 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 56 13.938 -28.362 -45.707 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 56 12.370 -27.668 -46.736 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 57 10.437 -26.034 -43.896 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 57 7.002 -25.166 -45.527 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 57 6.882 -24.264 -44.021 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 57 4.203 -26.989 -48.333 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 57 6.611 -30.091 -45.909 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 57 6.992 -30.672 -46.749 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 57 5.696 -30.554 -45.534 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 57 7.356 -30.072 -45.115 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 58 6.547 -23.663 -40.276 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 58 6.927 -26.185 -39.574 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 58 6.201 -26.345 -37.980 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 58 3.427 -29.834 -37.832 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 58 5.190 -29.539 -42.077 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 58 4.307 -29.887 -42.600 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 58 5.852 -30.372 -41.863 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 58 5.707 -28.794 -42.670 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 59 3.310 -21.582 -37.021 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 59 1.799 -20.145 -40.023 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 59 1.228 -18.608 -39.385 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 59 0.268 -23.604 -42.134 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 59 1.103 -24.751 -37.762 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 59 1.588 -25.682 -38.004 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 59 0.051 -24.898 -37.567 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 59 1.586 -24.267 -36.928 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 60 -1.322 -17.920 -34.899 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 60 -0.930 -16.033 -39.242 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 60 -1.407 -17.972 -39.342 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 61 -4.640 -18.679 -40.841 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 61 -4.277 -21.166 -44.033 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 61 -4.198 -22.611 -42.653 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 62 -9.043 -21.445 -40.688 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 62 -10.238 -24.326 -41.291 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 62 -9.860 -24.619 -39.350 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 63 -13.407 -23.897 -37.096 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 63 -13.431 -27.004 -34.197 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 63 -12.657 -25.578 -33.030 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 64 -13.709 -24.716 -31.992 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 64 -16.336 -22.377 -28.310 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 64 -15.844 -20.766 -29.386 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 65 -17.860 -21.310 -28.257 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 65 -22.976 -20.512 -28.798 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 65 -23.261 -20.899 -27.105 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 65 -25.552 -21.200 -32.122 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 65 -21.424 -22.668 -33.464 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 65 -21.383 -22.119 -34.408 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 65 -21.804 -23.676 -33.654 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 65 -20.414 -22.743 -33.053 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 66 -24.255 -23.812 -26.903 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 66 -26.940 -25.957 -23.578 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 66 -28.132 -25.813 -25.176 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 67 -27.036 -29.645 -26.130 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 67 -30.826 -27.646 -27.912 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 67 -30.073 -29.101 -29.057 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 68 -30.712 -31.793 -24.430 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 68 -30.203 -35.396 -21.730 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 68 -28.952 -36.082 -23.130 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 69 -26.083 -33.645 -20.579 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 69 -25.025 -37.051 -23.359 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 69 -23.837 -35.451 -23.511 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 70 -21.040 -34.878 -18.442 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 70 -21.856 -37.526 -14.554 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 70 -21.448 -39.137 -15.667 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 71 -17.578 -39.327 -14.754 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 71 -17.732 -43.277 -12.815 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 71 -17.327 -43.850 -14.687 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 72 -13.713 -44.264 -13.880 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 72 -13.659 -48.115 -16.001 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 72 -12.753 -47.016 -17.404 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 73 -9.247 -47.931 -16.175 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 73 -9.463 -49.764 -20.185 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 73 -9.099 -47.969 -20.985 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 74 -5.775 -49.887 -21.371 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 74 -6.051 -47.388 -25.184 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 74 -4.626 -48.296 -25.672 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 74 -6.963 -42.941 -24.746 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 74 -6.444 -44.825 -20.627 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 74 -7.367 -44.472 -20.184 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 74 -5.632 -44.140 -20.406 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 74 -6.206 -45.817 -20.261 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 75 -1.179 -48.472 -25.196 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 75 -1.205 -45.638 -28.729 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 75 -0.855 -44.209 -27.376 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 76 3.910 -44.908 -27.033 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 76 1.587 -41.039 -25.598 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 76 3.146 -40.248 -25.405 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 76 -0.674 -39.832 -22.548 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 76 -0.178 -44.437 -22.367 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 76 -1.244 -44.685 -22.252 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 76 0.269 -44.394 -21.360 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 76 0.303 -45.264 -22.911 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 77 5.357 -41.601 -23.415 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 77 8.440 -39.490 -23.992 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 77 7.075 -39.318 -25.442 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 78 5.248 -36.604 -21.120 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 78 2.573 -33.832 -21.737 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 78 1.879 -35.693 -21.508 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 79 0.092 -36.921 -18.125 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 79 -1.718 -37.107 -16.117 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 79 -2.053 -35.386 -17.079 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 80 -4.463 -34.650 -20.732 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 80 -3.273 -31.147 -23.035 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 80 -2.936 -32.575 -24.393 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 81 -6.317 -31.320 -25.120 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 81 -3.855 -34.972 -27.925 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 81 -4.614 -34.367 -29.392 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 81 -3.060 -38.984 -27.279 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 81 -4.013 -37.366 -23.125 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 81 -3.040 -37.535 -22.663 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 81 -4.662 -38.221 -22.920 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 81 -4.461 -36.467 -22.699 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 82 -7.734 -35.306 -31.238 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 82 -6.338 -39.395 -32.115 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 82 -7.483 -40.013 -30.598 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 83 -11.008 -40.920 -30.686 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 83 -8.874 -44.257 -31.632 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 83 -9.729 -44.415 -29.832 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 84 -13.593 -46.178 -29.670 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 84 -13.019 -49.839 -27.630 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 84 -14.477 -48.674 -26.912 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 85 -17.233 -51.182 -28.859 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 85 -17.791 -52.337 -24.480 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 85 -18.991 -50.741 -24.380 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 86 -22.036 -53.549 -25.028 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 86 -23.385 -51.523 -21.036 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 86 -24.062 -49.950 -22.068 1.00 0.00 H Number of atoms: 2718 Number of residues: 86 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. A 1 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. A 1 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. A 1 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. A 1 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. A 1 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2934 Number of angles built: 5323 Number of dihedrals built: 7947 Number of impropers built: 577 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 3684146 Number of van der Waals pairs: 343164 Number of H-bonds built: 39 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 10 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 246759.7444 kcal/mol (246292.4308 without restraints) Performing minimization step: 2. Total energy = 242936.1607 kcal/mol (242480.8530 without restraints) Performing minimization step: 3. Total energy = 239212.1526 kcal/mol (238768.3482 without restraints) Performing minimization step: 4. Total energy = 235583.6026 kcal/mol (235150.8321 without restraints) Performing minimization step: 5. Total energy = 232046.6624 kcal/mol (231624.4865 without restraints) Performing minimization step: 6. Total energy = 228597.7270 kcal/mol (228185.7337 without restraints) Performing minimization step: 7. Total energy = 225233.4123 kcal/mol (224831.2146 without restraints) Performing minimization step: 8. Total energy = 221950.5361 kcal/mol (221557.7696 without restraints) Performing minimization step: 9. Total energy = 218746.0999 kcal/mol (218362.4210 without restraints) Performing minimization step: 10. Total energy = 215617.2739 kcal/mol (215242.3580 without restraints) Performing minimization step: 11. Total energy = 212561.3833 kcal/mol (212194.9237 without restraints) Performing minimization step: 12. Total energy = 209575.8958 kcal/mol (209217.6013 without restraints) Performing minimization step: 13. Total energy = 206658.4102 kcal/mol (206308.0049 without restraints) Performing minimization step: 14. Total energy = 203806.6469 kcal/mol (203463.8686 without restraints) Performing minimization step: 15. Total energy = 201018.4391 kcal/mol (200683.0383 without restraints) Performing minimization step: 16. Total energy = 198291.7243 kcal/mol (197963.4635 without restraints) Performing minimization step: 17. Total energy = 195624.5372 kcal/mol (195303.1900 without restraints) Performing minimization step: 18. Total energy = 193015.0038 kcal/mol (192700.3542 without restraints) Performing minimization step: 19. Total energy = 190461.3346 kcal/mol (190153.1759 without restraints) Performing minimization step: 20. Total energy = 187961.8185 kcal/mol (187659.9535 without restraints) Performing minimization step: 21. Total energy = 185514.8200 kcal/mol (185219.0598 without restraints) Performing minimization step: 22. Total energy = 183118.7722 kcal/mol (182828.9359 without restraints) Performing minimization step: 23. Total energy = 180772.1747 kcal/mol (180488.0889 without restraints) Performing minimization step: 24. Total energy = 178473.5886 kcal/mol (178195.0869 without restraints) Performing minimization step: 25. Total energy = 176221.6331 kcal/mol (175948.5560 without restraints) Performing minimization step: 26. Total energy = 174014.9828 kcal/mol (173747.1768 without restraints) Performing minimization step: 27. Total energy = 171852.3639 kcal/mol (171589.6818 without restraints) Performing minimization step: 28. Total energy = 169732.5525 kcal/mol (169474.8525 without restraints) Performing minimization step: 29. Total energy = 167654.3707 kcal/mol (167401.5165 without restraints) Performing minimization step: 30. Total energy = 165616.6851 kcal/mol (165368.5454 without restraints) Performing minimization step: 31. Total energy = 163618.4040 kcal/mol (163374.8526 without restraints) Performing minimization step: 32. Total energy = 161658.4776 kcal/mol (161419.3925 without restraints) Performing minimization step: 33. Total energy = 159735.8917 kcal/mol (159501.1557 without restraints) Performing minimization step: 34. Total energy = 157849.6698 kcal/mol (157619.1695 without restraints) Performing minimization step: 35. Total energy = 155998.8696 kcal/mol (155772.4958 without restraints) Performing minimization step: 36. Total energy = 154182.5816 kcal/mol (153960.2290 without restraints) Performing minimization step: 37. Total energy = 152399.9281 kcal/mol (152181.4948 without restraints) Performing minimization step: 38. Total energy = 150650.0612 kcal/mol (150435.4488 without restraints) Performing minimization step: 39. Total energy = 148932.1618 kcal/mol (148721.2753 without restraints) Performing minimization step: 40. Total energy = 147245.4383 kcal/mol (147038.1858 without restraints) Performing minimization step: 41. Total energy = 145589.1253 kcal/mol (145385.4180 without restraints) Performing minimization step: 42. Total energy = 143962.4826 kcal/mol (143762.2346 without restraints) Performing minimization step: 43. Total energy = 142364.7942 kcal/mol (142167.9223 without restraints) Performing minimization step: 44. Total energy = 140795.3667 kcal/mol (140601.7906 without restraints) Performing minimization step: 45. Total energy = 139253.5300 kcal/mol (139063.1718 without restraints) Performing minimization step: 46. Total energy = 137738.6342 kcal/mol (137551.4181 without restraints) Performing minimization step: 47. Total energy = 136250.0497 kcal/mol (136065.9029 without restraints) Performing minimization step: 48. Total energy = 134787.1671 kcal/mol (134606.0187 without restraints) Performing minimization step: 49. Total energy = 133349.3955 kcal/mol (133171.1769 without restraints) Performing minimization step: 50. Total energy = 131936.1621 kcal/mol (131760.8065 without restraints) Performing minimization step: 51. Total energy = 130546.9110 kcal/mol (130374.3540 without restraints) Performing minimization step: 52. Total energy = 129181.1042 kcal/mol (129011.2832 without restraints) Performing minimization step: 53. Total energy = 127838.2182 kcal/mol (127671.0723 without restraints) Performing minimization step: 54. Total energy = 126517.7458 kcal/mol (126353.2162 without restraints) Performing minimization step: 55. Total energy = 125219.1946 kcal/mol (125057.2238 without restraints) Performing minimization step: 56. Total energy = 123942.0862 kcal/mol (123782.6187 without restraints) Performing minimization step: 57. Total energy = 122685.9563 kcal/mol (122528.9380 without restraints) Performing minimization step: 58. Total energy = 121450.3536 kcal/mol (121295.7321 without restraints) Performing minimization step: 59. Total energy = 120234.8394 kcal/mol (120082.5636 without restraints) Performing minimization step: 60. Total energy = 119038.9882 kcal/mol (118889.0084 without restraints) Performing minimization step: 61. Total energy = 117862.3853 kcal/mol (117714.6535 without restraints) Performing minimization step: 62. Total energy = 116704.6279 kcal/mol (116559.0971 without restraints) Performing minimization step: 63. Total energy = 115565.3244 kcal/mol (115421.9491 without restraints) Performing minimization step: 64. Total energy = 114444.0930 kcal/mol (114302.8286 without restraints) Performing minimization step: 65. Total energy = 113340.5639 kcal/mol (113201.3675 without restraints) Performing minimization step: 66. Total energy = 112254.3758 kcal/mol (112117.2052 without restraints) Performing minimization step: 67. Total energy = 111185.1772 kcal/mol (111049.9915 without restraints) Performing minimization step: 68. Total energy = 110132.6262 kcal/mol (109999.3858 without restraints) Performing minimization step: 69. Total energy = 109096.3899 kcal/mol (108965.0557 without restraints) Performing minimization step: 70. Total energy = 108076.1436 kcal/mol (107946.6780 without restraints) Performing minimization step: 71. Total energy = 107071.5714 kcal/mol (106943.9374 without restraints) Performing minimization step: 72. Total energy = 106082.3651 kcal/mol (105956.5270 without restraints) Performing minimization step: 73. Total energy = 105108.2248 kcal/mol (104984.1475 without restraints) Performing minimization step: 74. Total energy = 104148.8576 kcal/mol (104026.5070 without restraints) Performing minimization step: 75. Total energy = 103203.9786 kcal/mol (103083.3216 without restraints) Performing minimization step: 76. Total energy = 102273.3096 kcal/mol (102154.3137 without restraints) Performing minimization step: 77. Total energy = 101356.5795 kcal/mol (101239.2130 without restraints) Performing minimization step: 78. Total energy = 100453.5238 kcal/mol (100337.7559 without restraints) Performing minimization step: 79. Total energy = 99563.8835 kcal/mol (99449.6841 without restraints) Performing minimization step: 80. Total energy = 98687.4073 kcal/mol (98574.7471 without restraints) Performing minimization step: 81. Total energy = 97823.8496 kcal/mol (97712.6998 without restraints) Performing minimization step: 82. Total energy = 96972.9699 kcal/mol (96863.3027 without restraints) Performing minimization step: 83. Total energy = 96134.5341 kcal/mol (96026.3221 without restraints) Performing minimization step: 84. Total energy = 95308.3135 kcal/mol (95201.5299 without restraints) Performing minimization step: 85. Total energy = 94494.0845 kcal/mol (94388.7034 without restraints) Performing minimization step: 86. Total energy = 93691.6292 kcal/mol (93587.6250 without restraints) Performing minimization step: 87. Total energy = 92900.7347 kcal/mol (92798.0826 without restraints) Performing minimization step: 88. Total energy = 92121.1921 kcal/mol (92019.8679 without restraints) Performing minimization step: 89. Total energy = 91352.7987 kcal/mol (91252.7786 without restraints) Performing minimization step: 90. Total energy = 90595.3552 kcal/mol (90496.6160 without restraints) Performing minimization step: 91. Total energy = 89848.6675 kcal/mol (89751.1864 without restraints) Performing minimization step: 92. Total energy = 89112.5453 kcal/mol (89016.3003 without restraints) Performing minimization step: 93. Total energy = 88386.8032 kcal/mol (88291.7726 without restraints) Performing minimization step: 94. Total energy = 87671.2594 kcal/mol (87577.4219 without restraints) Performing minimization step: 95. Total energy = 86965.7361 kcal/mol (86873.0710 without restraints) Performing minimization step: 96. Total energy = 86270.0598 kcal/mol (86178.5469 without restraints) Performing minimization step: 97. Total energy = 85584.0608 kcal/mol (85493.6801 without restraints) Performing minimization step: 98. Total energy = 84907.5722 kcal/mol (84818.3045 without restraints) Performing minimization step: 99. Total energy = 84240.4321 kcal/mol (84152.2582 without restraints) Performing minimization step: 100. Total energy = 83582.4806 kcal/mol (83495.3821 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 101. Total energy = 82933.5626 kcal/mol (82847.5212 without restraints) Performing minimization step: 102. Total energy = 82293.5250 kcal/mol (82208.5229 without restraints) Performing minimization step: 103. Total energy = 81662.2188 kcal/mol (81578.2386 without restraints) Performing minimization step: 104. Total energy = 81039.4977 kcal/mol (80956.5223 without restraints) Performing minimization step: 105. Total energy = 80425.2189 kcal/mol (80343.2317 without restraints) Performing minimization step: 106. Total energy = 79819.2426 kcal/mol (79738.2271 without restraints) Performing minimization step: 107. Total energy = 79221.4309 kcal/mol (79141.3711 without restraints) Performing minimization step: 108. Total energy = 78631.6497 kcal/mol (78552.5299 without restraints) Performing minimization step: 109. Total energy = 78049.7676 kcal/mol (77971.5725 without restraints) Performing minimization step: 110. Total energy = 77475.6551 kcal/mol (77398.3695 without restraints) Performing minimization step: 111. Total energy = 76909.1860 kcal/mol (76832.7953 without restraints) Performing minimization step: 112. Total energy = 76350.2366 kcal/mol (76274.7262 without restraints) Performing minimization step: 113. Total energy = 75798.6858 kcal/mol (75724.0416 without restraints) Performing minimization step: 114. Total energy = 75254.4139 kcal/mol (75180.6219 without restraints) Performing minimization step: 115. Total energy = 74717.3052 kcal/mol (74644.3519 without restraints) Performing minimization step: 116. Total energy = 74187.2449 kcal/mol (74115.1168 without restraints) Performing minimization step: 117. Total energy = 73664.1209 kcal/mol (73592.8050 without restraints) Performing minimization step: 118. Total energy = 73147.8232 kcal/mol (73077.3066 without restraints) Performing minimization step: 119. Total energy = 72638.2448 kcal/mol (72568.5149 without restraints) Performing minimization step: 120. Total energy = 72135.2796 kcal/mol (72066.3242 without restraints) Performing minimization step: 121. Total energy = 71638.8238 kcal/mol (71570.6307 without restraints) Performing minimization step: 122. Total energy = 71148.7762 kcal/mol (71081.3335 without restraints) Performing minimization step: 123. Total energy = 70665.0374 kcal/mol (70598.3335 without restraints) Performing minimization step: 124. Total energy = 70187.5090 kcal/mol (70121.5323 without restraints) Performing minimization step: 125. Total energy = 69716.0950 kcal/mol (69650.8345 without restraints) Performing minimization step: 126. Total energy = 69250.7013 kcal/mol (69186.1458 without restraints) Performing minimization step: 127. Total energy = 68791.2355 kcal/mol (68727.3744 without restraints) Performing minimization step: 128. Total energy = 68337.6071 kcal/mol (68274.4296 without restraints) Performing minimization step: 129. Total energy = 67889.7273 kcal/mol (67827.2231 without restraints) Performing minimization step: 130. Total energy = 67447.5077 kcal/mol (67385.6666 without restraints) Performing minimization step: 131. Total energy = 67010.8634 kcal/mol (66949.6753 without restraints) Performing minimization step: 132. Total energy = 66579.7104 kcal/mol (66519.1656 without restraints) Performing minimization step: 133. Total energy = 66153.9657 kcal/mol (66094.0542 without restraints) Performing minimization step: 134. Total energy = 65733.5480 kcal/mol (65674.2606 without restraints) Performing minimization step: 135. Total energy = 65318.3777 kcal/mol (65259.7049 without restraints) Performing minimization step: 136. Total energy = 64908.3762 kcal/mol (64850.3090 without restraints) Performing minimization step: 137. Total energy = 64503.4673 kcal/mol (64445.9967 without restraints) Performing minimization step: 138. Total energy = 64103.5748 kcal/mol (64046.6918 without restraints) Performing minimization step: 139. Total energy = 63708.6248 kcal/mol (63652.3209 without restraints) Performing minimization step: 140. Total energy = 63318.5445 kcal/mol (63262.8110 without restraints) Performing minimization step: 141. Total energy = 62933.2621 kcal/mol (62878.0907 without restraints) Performing minimization step: 142. Total energy = 62552.7076 kcal/mol (62498.0901 without restraints) Performing minimization step: 143. Total energy = 62176.8112 kcal/mol (62122.7395 without restraints) Performing minimization step: 144. Total energy = 61805.5057 kcal/mol (61751.9718 without restraints) Performing minimization step: 145. Total energy = 61438.7238 kcal/mol (61385.7199 without restraints) Performing minimization step: 146. Total energy = 61076.3996 kcal/mol (61023.9181 without restraints) Performing minimization step: 147. Total energy = 60718.4692 kcal/mol (60666.5025 without restraints) Performing minimization step: 148. Total energy = 60364.8695 kcal/mol (60313.4101 without restraints) Performing minimization step: 149. Total energy = 60015.5369 kcal/mol (59964.5776 without restraints) Performing minimization step: 150. Total energy = 59670.4112 kcal/mol (59619.9448 without restraints) Performing minimization step: 151. Total energy = 59329.4321 kcal/mol (59279.4516 without restraints) Performing minimization step: 152. Total energy = 58992.5393 kcal/mol (58943.0377 without restraints) Performing minimization step: 153. Total energy = 58659.6752 kcal/mol (58610.6456 without restraints) Performing minimization step: 154. Total energy = 58330.7826 kcal/mol (58282.2184 without restraints) Performing minimization step: 155. Total energy = 58005.8052 kcal/mol (57957.6998 without restraints) Performing minimization step: 156. Total energy = 57684.6874 kcal/mol (57637.0343 without restraints) Performing minimization step: 157. Total energy = 57367.3748 kcal/mol (57320.1676 without restraints) Performing minimization step: 158. Total energy = 57053.8142 kcal/mol (57007.0467 without restraints) Performing minimization step: 159. Total energy = 56743.9521 kcal/mol (56697.6180 without restraints) Performing minimization step: 160. Total energy = 56437.7376 kcal/mol (56391.8311 without restraints) Performing minimization step: 161. Total energy = 56135.1183 kcal/mol (56089.6330 without restraints) Performing minimization step: 162. Total energy = 55836.0447 kcal/mol (55790.9749 without restraints) Performing minimization step: 163. Total energy = 55540.4669 kcal/mol (55495.8069 without restraints) Performing minimization step: 164. Total energy = 55248.3378 kcal/mol (55204.0820 without restraints) Performing minimization step: 165. Total energy = 54959.6077 kcal/mol (54915.7501 without restraints) Performing minimization step: 166. Total energy = 54674.2300 kcal/mol (54630.7654 without restraints) Performing minimization step: 167. Total energy = 54392.1586 kcal/mol (54349.0814 without restraints) Performing minimization step: 168. Total energy = 54113.3475 kcal/mol (54070.6525 without restraints) Performing minimization step: 169. Total energy = 53837.7520 kcal/mol (53795.4338 without restraints) Performing minimization step: 170. Total energy = 53565.3279 kcal/mol (53523.3814 without restraints) Performing minimization step: 171. Total energy = 53296.0317 kcal/mol (53254.4518 without restraints) Performing minimization step: 172. Total energy = 53029.8205 kcal/mol (52988.6022 without restraints) Performing minimization step: 173. Total energy = 52766.6519 kcal/mol (52725.7902 without restraints) Performing minimization step: 174. Total energy = 52506.4848 kcal/mol (52465.9750 without restraints) Performing minimization step: 175. Total energy = 52249.2780 kcal/mol (52209.1151 without restraints) Performing minimization step: 176. Total energy = 51994.9915 kcal/mol (51955.1709 without restraints) Performing minimization step: 177. Total energy = 51743.5855 kcal/mol (51704.1025 without restraints) Performing minimization step: 178. Total energy = 51495.0209 kcal/mol (51455.8710 without restraints) Performing minimization step: 179. Total energy = 51249.2594 kcal/mol (51210.4380 without restraints) Performing minimization step: 180. Total energy = 51006.2629 kcal/mol (50967.7656 without restraints) Performing minimization step: 181. Total energy = 50765.9943 kcal/mol (50727.8167 without restraints) Performing minimization step: 182. Total energy = 50528.4167 kcal/mol (50490.5546 without restraints) Performing minimization step: 183. Total energy = 50293.4944 kcal/mol (50255.9435 without restraints) Performing minimization step: 184. Total energy = 50061.1909 kcal/mol (50023.9470 without restraints) Performing minimization step: 185. Total energy = 49831.4716 kcal/mol (49794.5306 without restraints) Performing minimization step: 186. Total energy = 49604.3018 kcal/mol (49567.6597 without restraints) Performing minimization step: 187. Total energy = 49379.6472 kcal/mol (49343.3000 without restraints) Performing minimization step: 188. Total energy = 49157.4746 kcal/mol (49121.4182 without restraints) Performing minimization step: 189. Total energy = 48937.7509 kcal/mol (48901.9816 without restraints) Performing minimization step: 190. Total energy = 48720.4434 kcal/mol (48684.9573 without restraints) Performing minimization step: 191. Total energy = 48505.5201 kcal/mol (48470.3134 without restraints) Performing minimization step: 192. Total energy = 48292.9492 kcal/mol (48258.0184 without restraints) Performing minimization step: 193. Total energy = 48082.6994 kcal/mol (48048.0406 without restraints) Performing minimization step: 194. Total energy = 47874.7401 kcal/mol (47840.3498 without restraints) Performing minimization step: 195. Total energy = 47669.0413 kcal/mol (47634.9160 without restraints) Performing minimization step: 196. Total energy = 47465.5730 kcal/mol (47431.7091 without restraints) Performing minimization step: 197. Total energy = 47264.3057 kcal/mol (47230.6998 without restraints) Performing minimization step: 198. Total energy = 47065.2103 kcal/mol (47031.8591 without restraints) Performing minimization step: 199. Total energy = 46868.2585 kcal/mol (46835.1585 without restraints) Performing minimization step: 200. Total energy = 46673.4219 kcal/mol (46640.5699 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 201. Total energy = 46480.6729 kcal/mol (46448.0656 without restraints) Performing minimization step: 202. Total energy = 46289.9843 kcal/mol (46257.6185 without restraints) Performing minimization step: 203. Total energy = 46101.3286 kcal/mol (46069.2011 without restraints) Performing minimization step: 204. Total energy = 45914.6793 kcal/mol (45882.7871 without restraints) Performing minimization step: 205. Total energy = 45730.0108 kcal/mol (45698.3507 without restraints) Performing minimization step: 206. Total energy = 45547.2967 kcal/mol (45515.8658 without restraints) Performing minimization step: 207. Total energy = 45366.5120 kcal/mol (45335.3071 without restraints) Performing minimization step: 208. Total energy = 45187.6311 kcal/mol (45156.6494 without restraints) Performing minimization step: 209. Total energy = 45010.6289 kcal/mol (44979.8676 without restraints) Performing minimization step: 210. Total energy = 44835.4820 kcal/mol (44804.9381 without restraints) Performing minimization step: 211. Total energy = 44662.1658 kcal/mol (44631.8365 without restraints) Performing minimization step: 212. Total energy = 44490.6565 kcal/mol (44460.5389 without restraints) Performing minimization step: 213. Total energy = 44320.9308 kcal/mol (44291.0224 without restraints) Performing minimization step: 214. Total energy = 44152.9655 kcal/mol (44123.2634 without restraints) Performing minimization step: 215. Total energy = 43986.7381 kcal/mol (43957.2397 without restraints) Performing minimization step: 216. Total energy = 43822.2261 kcal/mol (43792.9288 without restraints) Performing minimization step: 217. Total energy = 43659.4074 kcal/mol (43630.3086 without restraints) Performing minimization step: 218. Total energy = 43498.2601 kcal/mol (43469.3574 without restraints) Performing minimization step: 219. Total energy = 43338.7624 kcal/mol (43310.0529 without restraints) Performing minimization step: 220. Total energy = 43180.8930 kcal/mol (43152.3744 without restraints) Performing minimization step: 221. Total energy = 43024.6316 kcal/mol (42996.3014 without restraints) Performing minimization step: 222. Total energy = 42869.9569 kcal/mol (42841.8128 without restraints) Performing minimization step: 223. Total energy = 42716.8491 kcal/mol (42688.8886 without restraints) Performing minimization step: 224. Total energy = 42565.2876 kcal/mol (42537.5083 without restraints) Performing minimization step: 225. Total energy = 42415.2530 kcal/mol (42387.6527 without restraints) Performing minimization step: 226. Total energy = 42266.7259 kcal/mol (42239.3022 without restraints) Performing minimization step: 227. Total energy = 42119.6865 kcal/mol (42092.4373 without restraints) Performing minimization step: 228. Total energy = 41974.1159 kcal/mol (41947.0389 without restraints) Performing minimization step: 229. Total energy = 41829.9955 kcal/mol (41803.0884 without restraints) Performing minimization step: 230. Total energy = 41687.3066 kcal/mol (41660.5674 without restraints) Performing minimization step: 231. Total energy = 41546.0312 kcal/mol (41519.4576 without restraints) Performing minimization step: 232. Total energy = 41406.1511 kcal/mol (41379.7413 without restraints) Performing minimization step: 233. Total energy = 41267.6487 kcal/mol (41241.4002 without restraints) Performing minimization step: 234. Total energy = 41130.5060 kcal/mol (41104.4168 without restraints) Performing minimization step: 235. Total energy = 40994.7063 kcal/mol (40968.7747 without restraints) Performing minimization step: 236. Total energy = 40860.2324 kcal/mol (40834.4560 without restraints) Performing minimization step: 237. Total energy = 40727.0674 kcal/mol (40701.4444 without restraints) Performing minimization step: 238. Total energy = 40595.1946 kcal/mol (40569.7231 without restraints) Performing minimization step: 239. Total energy = 40464.5974 kcal/mol (40439.2754 without restraints) Performing minimization step: 240. Total energy = 40335.2600 kcal/mol (40310.0856 without restraints) Performing minimization step: 241. Total energy = 40207.1665 kcal/mol (40182.1379 without restraints) Performing minimization step: 242. Total energy = 40080.3006 kcal/mol (40055.4159 without restraints) Performing minimization step: 243. Total energy = 39954.6473 kcal/mol (39929.9048 without restraints) Performing minimization step: 244. Total energy = 39830.1912 kcal/mol (39805.5889 without restraints) Performing minimization step: 245. Total energy = 39706.9171 kcal/mol (39682.4533 without restraints) Performing minimization step: 246. Total energy = 39584.8098 kcal/mol (39560.4828 without restraints) Performing minimization step: 247. Total energy = 39463.8552 kcal/mol (39439.6633 without restraints) Performing minimization step: 248. Total energy = 39344.0389 kcal/mol (39319.9803 without restraints) Performing minimization step: 249. Total energy = 39225.3458 kcal/mol (39201.4189 without restraints) Performing minimization step: 250. Total energy = 39107.7621 kcal/mol (39083.9652 without restraints) Performing minimization step: 251. Total energy = 38991.2739 kcal/mol (38967.6052 without restraints) Performing minimization step: 252. Total energy = 38875.8671 kcal/mol (38852.3253 without restraints) Performing minimization step: 253. Total energy = 38761.5282 kcal/mol (38738.1115 without restraints) Performing minimization step: 254. Total energy = 38648.2443 kcal/mol (38624.9513 without restraints) Performing minimization step: 255. Total energy = 38536.0018 kcal/mol (38512.8307 without restraints) Performing minimization step: 256. Total energy = 38424.7873 kcal/mol (38401.7367 without restraints) Performing minimization step: 257. Total energy = 38314.5881 kcal/mol (38291.6565 without restraints) Performing minimization step: 258. Total energy = 38205.3916 kcal/mol (38182.5774 without restraints) Performing minimization step: 259. Total energy = 38097.1847 kcal/mol (38074.4865 without restraints) Performing minimization step: 260. Total energy = 37989.9564 kcal/mol (37967.3728 without restraints) Performing minimization step: 261. Total energy = 37883.6931 kcal/mol (37861.2226 without restraints) Performing minimization step: 262. Total energy = 37778.3832 kcal/mol (37756.0244 without restraints) Performing minimization step: 263. Total energy = 37674.0150 kcal/mol (37651.7666 without restraints) Performing minimization step: 264. Total energy = 37570.5759 kcal/mol (37548.4363 without restraints) Performing minimization step: 265. Total energy = 37468.0553 kcal/mol (37446.0233 without restraints) Performing minimization step: 266. Total energy = 37366.4418 kcal/mol (37344.5161 without restraints) Performing minimization step: 267. Total energy = 37265.7233 kcal/mol (37243.9024 without restraints) Performing minimization step: 268. Total energy = 37165.8889 kcal/mol (37144.1716 without restraints) Performing minimization step: 269. Total energy = 37066.9277 kcal/mol (37045.3127 without restraints) Performing minimization step: 270. Total energy = 36968.8290 kcal/mol (36947.3150 without restraints) Performing minimization step: 271. Total energy = 36871.5817 kcal/mol (36850.1674 without restraints) Performing minimization step: 272. Total energy = 36775.1752 kcal/mol (36753.8595 without restraints) Performing minimization step: 273. Total energy = 36679.5994 kcal/mol (36658.3809 without restraints) Performing minimization step: 274. Total energy = 36584.8434 kcal/mol (36563.7210 without restraints) Performing minimization step: 275. Total energy = 36490.8976 kcal/mol (36469.8701 without restraints) Performing minimization step: 276. Total energy = 36397.7518 kcal/mol (36376.8179 without restraints) Performing minimization step: 277. Total energy = 36305.3955 kcal/mol (36284.5541 without restraints) Performing minimization step: 278. Total energy = 36213.8196 kcal/mol (36193.0696 without restraints) Performing minimization step: 279. Total energy = 36123.0145 kcal/mol (36102.3548 without restraints) Performing minimization step: 280. Total energy = 36032.9702 kcal/mol (36012.3996 without restraints) Performing minimization step: 281. Total energy = 35943.6781 kcal/mol (35923.1955 without restraints) Performing minimization step: 282. Total energy = 35855.1282 kcal/mol (35834.7325 without restraints) Performing minimization step: 283. Total energy = 35767.3111 kcal/mol (35747.0013 without restraints) Performing minimization step: 284. Total energy = 35680.2181 kcal/mol (35659.9931 without restraints) Performing minimization step: 285. Total energy = 35593.8404 kcal/mol (35573.6992 without restraints) Performing minimization step: 286. Total energy = 35508.1689 kcal/mol (35488.1103 without restraints) Performing minimization step: 287. Total energy = 35423.1949 kcal/mol (35403.2180 without restraints) Performing minimization step: 288. Total energy = 35338.9099 kcal/mol (35319.0136 without restraints) Performing minimization step: 289. Total energy = 35255.3051 kcal/mol (35235.4885 without restraints) Performing minimization step: 290. Total energy = 35172.3725 kcal/mol (35152.6347 without restraints) Performing minimization step: 291. Total energy = 35090.1040 kcal/mol (35070.4437 without restraints) Performing minimization step: 292. Total energy = 35008.4912 kcal/mol (34988.9078 without restraints) Performing minimization step: 293. Total energy = 34927.5262 kcal/mol (34908.0185 without restraints) Performing minimization step: 294. Total energy = 34847.2003 kcal/mol (34827.7675 without restraints) Performing minimization step: 295. Total energy = 34767.5063 kcal/mol (34748.1475 without restraints) Performing minimization step: 296. Total energy = 34688.4373 kcal/mol (34669.1515 without restraints) Performing minimization step: 297. Total energy = 34609.9840 kcal/mol (34590.7703 without restraints) Performing minimization step: 298. Total energy = 34532.1390 kcal/mol (34512.9966 without restraints) Performing minimization step: 299. Total energy = 34454.8959 kcal/mol (34435.8239 without restraints) Performing minimization step: 300. Total energy = 34378.2464 kcal/mol (34359.2439 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 301. Total energy = 34302.1841 kcal/mol (34283.2501 without restraints) Performing minimization step: 302. Total energy = 34226.7013 kcal/mol (34207.8353 without restraints) Performing minimization step: 303. Total energy = 34151.7915 kcal/mol (34132.9925 without restraints) Performing minimization step: 304. Total energy = 34077.4466 kcal/mol (34058.7137 without restraints) Performing minimization step: 305. Total energy = 34003.6608 kcal/mol (33984.9933 without restraints) Performing minimization step: 306. Total energy = 33930.4269 kcal/mol (33911.8240 without restraints) Performing minimization step: 307. Total energy = 33857.7385 kcal/mol (33839.1993 without restraints) Performing minimization step: 308. Total energy = 33785.5889 kcal/mol (33767.1126 without restraints) Performing minimization step: 309. Total energy = 33713.9707 kcal/mol (33695.5567 without restraints) Performing minimization step: 310. Total energy = 33642.8779 kcal/mol (33624.5254 without restraints) Performing minimization step: 311. Total energy = 33572.3046 kcal/mol (33554.0129 without restraints) Performing minimization step: 312. Total energy = 33502.2442 kcal/mol (33484.0125 without restraints) Performing minimization step: 313. Total energy = 33432.6906 kcal/mol (33414.5180 without restraints) Performing minimization step: 314. Total energy = 33363.6375 kcal/mol (33345.5236 without restraints) Performing minimization step: 315. Total energy = 33295.0794 kcal/mol (33277.0236 without restraints) Performing minimization step: 316. Total energy = 33227.0092 kcal/mol (33209.0102 without restraints) Performing minimization step: 317. Total energy = 33159.4216 kcal/mol (33141.4790 without restraints) Performing minimization step: 318. Total energy = 33092.3113 kcal/mol (33074.4245 without restraints) Performing minimization step: 319. Total energy = 33025.6720 kcal/mol (33007.8402 without restraints) Performing minimization step: 320. Total energy = 32959.4981 kcal/mol (32941.7208 without restraints) Performing minimization step: 321. Total energy = 32893.7840 kcal/mol (32876.0605 without restraints) Performing minimization step: 322. Total energy = 32828.5245 kcal/mol (32810.8541 without restraints) Performing minimization step: 323. Total energy = 32763.7142 kcal/mol (32746.0963 without restraints) Performing minimization step: 324. Total energy = 32699.3473 kcal/mol (32681.7812 without restraints) Performing minimization step: 325. Total energy = 32635.4179 kcal/mol (32617.9030 without restraints) Performing minimization step: 326. Total energy = 32571.9221 kcal/mol (32554.4578 without restraints) Performing minimization step: 327. Total energy = 32508.8545 kcal/mol (32491.4402 without restraints) Performing minimization step: 328. Total energy = 32446.2093 kcal/mol (32428.8444 without restraints) Performing minimization step: 329. Total energy = 32383.9822 kcal/mol (32366.6661 without restraints) Performing minimization step: 330. Total energy = 32322.1678 kcal/mol (32304.8999 without restraints) Performing minimization step: 331. Total energy = 32260.7612 kcal/mol (32243.5409 without restraints) Performing minimization step: 332. Total energy = 32199.7576 kcal/mol (32182.5845 without restraints) Performing minimization step: 333. Total energy = 32139.1524 kcal/mol (32122.0258 without restraints) Performing minimization step: 334. Total energy = 32078.9408 kcal/mol (32061.8600 without restraints) Performing minimization step: 335. Total energy = 32019.1181 kcal/mol (32002.0830 without restraints) Performing minimization step: 336. Total energy = 31959.6800 kcal/mol (31942.6897 without restraints) Performing minimization step: 337. Total energy = 31900.6217 kcal/mol (31883.6756 without restraints) Performing minimization step: 338. Total energy = 31841.9385 kcal/mol (31825.0363 without restraints) Performing minimization step: 339. Total energy = 31783.6265 kcal/mol (31766.7677 without restraints) Performing minimization step: 340. Total energy = 31725.6813 kcal/mol (31708.8652 without restraints) Performing minimization step: 341. Total energy = 31668.0984 kcal/mol (31651.3246 without restraints) Performing minimization step: 342. Total energy = 31610.8737 kcal/mol (31594.1418 without restraints) Performing minimization step: 343. Total energy = 31554.0033 kcal/mol (31537.3126 without restraints) Performing minimization step: 344. Total energy = 31497.4825 kcal/mol (31480.8326 without restraints) Performing minimization step: 345. Total energy = 31441.3074 kcal/mol (31424.6979 without restraints) Performing minimization step: 346. Total energy = 31385.4743 kcal/mol (31368.9047 without restraints) Performing minimization step: 347. Total energy = 31329.9790 kcal/mol (31313.4488 without restraints) Performing minimization step: 348. Total energy = 31274.8179 kcal/mol (31258.3267 without restraints) Performing minimization step: 349. Total energy = 31219.9864 kcal/mol (31203.5337 without restraints) Performing minimization step: 350. Total energy = 31165.4815 kcal/mol (31149.0668 without restraints) Performing minimization step: 351. Total energy = 31111.2992 kcal/mol (31094.9221 without restraints) Performing minimization step: 352. Total energy = 31057.4356 kcal/mol (31041.0958 without restraints) Performing minimization step: 353. Total energy = 31003.8877 kcal/mol (30987.5847 without restraints) Performing minimization step: 354. Total energy = 30950.6511 kcal/mol (30934.3845 without restraints) Performing minimization step: 355. Total energy = 30897.7223 kcal/mol (30881.4914 without restraints) Performing minimization step: 356. Total energy = 30845.0980 kcal/mol (30828.9026 without restraints) Performing minimization step: 357. Total energy = 30792.7752 kcal/mol (30776.6150 without restraints) Performing minimization step: 358. Total energy = 30740.7504 kcal/mol (30724.6249 without restraints) Performing minimization step: 359. Total energy = 30689.0195 kcal/mol (30672.9283 without restraints) Performing minimization step: 360. Total energy = 30637.5792 kcal/mol (30621.5220 without restraints) Performing minimization step: 361. Total energy = 30586.4271 kcal/mol (30570.4033 without restraints) Performing minimization step: 362. Total energy = 30535.5597 kcal/mol (30519.5690 without restraints) Performing minimization step: 363. Total energy = 30484.9735 kcal/mol (30469.0155 without restraints) Performing minimization step: 364. Total energy = 30434.6657 kcal/mol (30418.7403 without restraints) Performing minimization step: 365. Total energy = 30384.6335 kcal/mol (30368.7400 without restraints) Performing minimization step: 366. Total energy = 30334.8728 kcal/mol (30319.0110 without restraints) Performing minimization step: 367. Total energy = 30285.3808 kcal/mol (30269.5503 without restraints) Performing minimization step: 368. Total energy = 30236.1550 kcal/mol (30220.3555 without restraints) Performing minimization step: 369. Total energy = 30187.1925 kcal/mol (30171.4236 without restraints) Performing minimization step: 370. Total energy = 30138.4899 kcal/mol (30122.7513 without restraints) Performing minimization step: 371. Total energy = 30090.0444 kcal/mol (30074.3358 without restraints) Performing minimization step: 372. Total energy = 30041.8536 kcal/mol (30026.1746 without restraints) Performing minimization step: 373. Total energy = 29993.9149 kcal/mol (29978.2653 without restraints) Performing minimization step: 374. Total energy = 29946.2249 kcal/mol (29930.6040 without restraints) Performing minimization step: 375. Total energy = 29898.7813 kcal/mol (29883.1892 without restraints) Performing minimization step: 376. Total energy = 29851.5814 kcal/mol (29836.0176 without restraints) Performing minimization step: 377. Total energy = 29804.6222 kcal/mol (29789.0865 without restraints) Performing minimization step: 378. Total energy = 29757.9018 kcal/mol (29742.3938 without restraints) Performing minimization step: 379. Total energy = 29711.4176 kcal/mol (29695.9370 without restraints) Performing minimization step: 380. Total energy = 29665.1667 kcal/mol (29649.7132 without restraints) Performing minimization step: 381. Total energy = 29619.1453 kcal/mol (29603.7184 without restraints) Performing minimization step: 382. Total energy = 29573.3535 kcal/mol (29557.9534 without restraints) Performing minimization step: 383. Total energy = 29527.7876 kcal/mol (29512.4137 without restraints) Performing minimization step: 384. Total energy = 29482.4448 kcal/mol (29467.0968 without restraints) Performing minimization step: 385. Total energy = 29437.3235 kcal/mol (29422.0012 without restraints) Performing minimization step: 386. Total energy = 29392.4209 kcal/mol (29377.1241 without restraints) Performing minimization step: 387. Total energy = 29347.7344 kcal/mol (29332.4628 without restraints) Performing minimization step: 388. Total energy = 29303.2627 kcal/mol (29288.0159 without restraints) Performing minimization step: 389. Total energy = 29259.0027 kcal/mol (29243.7805 without restraints) Performing minimization step: 390. Total energy = 29214.9533 kcal/mol (29199.7556 without restraints) Performing minimization step: 391. Total energy = 29171.1113 kcal/mol (29155.9376 without restraints) Performing minimization step: 392. Total energy = 29127.4749 kcal/mol (29112.3249 without restraints) Performing minimization step: 393. Total energy = 29084.0415 kcal/mol (29068.9153 without restraints) Performing minimization step: 394. Total energy = 29040.8100 kcal/mol (29025.7071 without restraints) Performing minimization step: 395. Total energy = 28997.7770 kcal/mol (28982.6974 without restraints) Performing minimization step: 396. Total energy = 28954.9417 kcal/mol (28939.8848 without restraints) Performing minimization step: 397. Total energy = 28912.3011 kcal/mol (28897.2669 without restraints) Performing minimization step: 398. Total energy = 28869.8545 kcal/mol (28854.8426 without restraints) Performing minimization step: 399. Total energy = 28827.5992 kcal/mol (28812.6095 without restraints) Performing minimization step: 400. Total energy = 28785.5334 kcal/mol (28770.5657 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 401. Total energy = 28743.6548 kcal/mol (28728.7088 without restraints) Performing minimization step: 402. Total energy = 28701.9621 kcal/mol (28687.0376 without restraints) Performing minimization step: 403. Total energy = 28660.4528 kcal/mol (28645.5495 without restraints) Performing minimization step: 404. Total energy = 28619.1254 kcal/mol (28604.2432 without restraints) Performing minimization step: 405. Total energy = 28577.9782 kcal/mol (28563.1169 without restraints) Performing minimization step: 406. Total energy = 28537.0095 kcal/mol (28522.1688 without restraints) Performing minimization step: 407. Total energy = 28496.2175 kcal/mol (28481.3973 without restraints) Performing minimization step: 408. Total energy = 28455.6005 kcal/mol (28440.8005 without restraints) Performing minimization step: 409. Total energy = 28415.1569 kcal/mol (28400.3770 without restraints) Performing minimization step: 410. Total energy = 28374.8846 kcal/mol (28360.1245 without restraints) Performing minimization step: 411. Total energy = 28334.7823 kcal/mol (28320.0419 without restraints) Performing minimization step: 412. Total energy = 28294.8486 kcal/mol (28280.1277 without restraints) Performing minimization step: 413. Total energy = 28255.0809 kcal/mol (28240.3793 without restraints) Performing minimization step: 414. Total energy = 28215.4784 kcal/mol (28200.7958 without restraints) Performing minimization step: 415. Total energy = 28176.0396 kcal/mol (28161.3759 without restraints) Performing minimization step: 416. Total energy = 28136.7632 kcal/mol (28122.1182 without restraints) Performing minimization step: 417. Total energy = 28097.6466 kcal/mol (28083.0202 without restraints) Performing minimization step: 418. Total energy = 28058.6896 kcal/mol (28044.0815 without restraints) Performing minimization step: 419. Total energy = 28019.8891 kcal/mol (28005.2992 without restraints) Performing minimization step: 420. Total energy = 27981.2451 kcal/mol (27966.6732 without restraints) Performing minimization step: 421. Total energy = 27942.7558 kcal/mol (27928.2019 without restraints) Performing minimization step: 422. Total energy = 27904.4196 kcal/mol (27889.8832 without restraints) Performing minimization step: 423. Total energy = 27866.2352 kcal/mol (27851.7165 without restraints) Performing minimization step: 424. Total energy = 27828.2015 kcal/mol (27813.6999 without restraints) Performing minimization step: 425. Total energy = 27790.3162 kcal/mol (27775.8318 without restraints) Performing minimization step: 426. Total energy = 27752.5786 kcal/mol (27738.1113 without restraints) Performing minimization step: 427. Total energy = 27714.9867 kcal/mol (27700.5362 without restraints) Performing minimization step: 428. Total energy = 27677.5403 kcal/mol (27663.1066 without restraints) Performing minimization step: 429. Total energy = 27640.2375 kcal/mol (27625.8202 without restraints) Performing minimization step: 430. Total energy = 27603.0768 kcal/mol (27588.6760 without restraints) Performing minimization step: 431. Total energy = 27566.0579 kcal/mol (27551.6734 without restraints) Performing minimization step: 432. Total energy = 27529.1782 kcal/mol (27514.8098 without restraints) Performing minimization step: 433. Total energy = 27492.4374 kcal/mol (27478.0850 without restraints) Performing minimization step: 434. Total energy = 27455.8339 kcal/mol (27441.4972 without restraints) Performing minimization step: 435. Total energy = 27419.3667 kcal/mol (27405.0458 without restraints) Performing minimization step: 436. Total energy = 27383.0345 kcal/mol (27368.7291 without restraints) Performing minimization step: 437. Total energy = 27346.8366 kcal/mol (27332.5467 without restraints) Performing minimization step: 438. Total energy = 27310.7712 kcal/mol (27296.4965 without restraints) Performing minimization step: 439. Total energy = 27274.8372 kcal/mol (27260.5776 without restraints) Performing minimization step: 440. Total energy = 27239.0343 kcal/mol (27224.7899 without restraints) Performing minimization step: 441. Total energy = 27203.3605 kcal/mol (27189.1308 without restraints) Performing minimization step: 442. Total energy = 27167.8151 kcal/mol (27153.6001 without restraints) Performing minimization step: 443. Total energy = 27132.3968 kcal/mol (27118.1965 without restraints) Performing minimization step: 444. Total energy = 27097.1049 kcal/mol (27082.9191 without restraints) Performing minimization step: 445. Total energy = 27061.9382 kcal/mol (27047.7669 without restraints) Performing minimization step: 446. Total energy = 27026.8955 kcal/mol (27012.7385 without restraints) Performing minimization step: 447. Total energy = 26991.9760 kcal/mol (26977.8330 without restraints) Performing minimization step: 448. Total energy = 26957.1788 kcal/mol (26943.0497 without restraints) Performing minimization step: 449. Total energy = 26922.5023 kcal/mol (26908.3871 without restraints) Performing minimization step: 450. Total energy = 26887.9461 kcal/mol (26873.8448 without restraints) Performing minimization step: 451. Total energy = 26853.5093 kcal/mol (26839.4214 without restraints) Performing minimization step: 452. Total energy = 26819.1900 kcal/mol (26805.1159 without restraints) Performing minimization step: 453. Total energy = 26784.9884 kcal/mol (26770.9277 without restraints) Performing minimization step: 454. Total energy = 26750.9031 kcal/mol (26736.8557 without restraints) Performing minimization step: 455. Total energy = 26716.9331 kcal/mol (26702.8989 without restraints) Performing minimization step: 456. Total energy = 26683.0776 kcal/mol (26669.0566 without restraints) Performing minimization step: 457. Total energy = 26649.3356 kcal/mol (26635.3276 without restraints) Performing minimization step: 458. Total energy = 26615.7066 kcal/mol (26601.7115 without restraints) Performing minimization step: 459. Total energy = 26582.1893 kcal/mol (26568.2070 without restraints) Performing minimization step: 460. Total energy = 26548.7834 kcal/mol (26534.8138 without restraints) Performing minimization step: 461. Total energy = 26515.4874 kcal/mol (26501.5301 without restraints) Performing minimization step: 462. Total energy = 26482.3004 kcal/mol (26468.3559 without restraints) Performing minimization step: 463. Total energy = 26449.2220 kcal/mol (26435.2897 without restraints) Performing minimization step: 464. Total energy = 26416.2519 kcal/mol (26402.3319 without restraints) Performing minimization step: 465. Total energy = 26383.3884 kcal/mol (26369.4810 without restraints) Performing minimization step: 466. Total energy = 26350.6301 kcal/mol (26336.7347 without restraints) Performing minimization step: 467. Total energy = 26317.9778 kcal/mol (26304.0945 without restraints) Performing minimization step: 468. Total energy = 26285.4298 kcal/mol (26271.5583 without restraints) Performing minimization step: 469. Total energy = 26252.9852 kcal/mol (26239.1256 without restraints) Performing minimization step: 470. Total energy = 26220.6438 kcal/mol (26206.7959 without restraints) Performing minimization step: 471. Total energy = 26188.4045 kcal/mol (26174.5682 without restraints) Performing minimization step: 472. Total energy = 26156.2668 kcal/mol (26142.4421 without restraints) Performing minimization step: 473. Total energy = 26124.2305 kcal/mol (26110.4173 without restraints) Performing minimization step: 474. Total energy = 26092.2938 kcal/mol (26078.4920 without restraints) Performing minimization step: 475. Total energy = 26060.4573 kcal/mol (26046.6669 without restraints) Performing minimization step: 476. Total energy = 26028.7187 kcal/mol (26014.9395 without restraints) Performing minimization step: 477. Total energy = 25997.0778 kcal/mol (25983.3098 without restraints) Performing minimization step: 478. Total energy = 25965.5340 kcal/mol (25951.7770 without restraints) Performing minimization step: 479. Total energy = 25934.0871 kcal/mol (25920.3412 without restraints) Performing minimization step: 480. Total energy = 25902.7360 kcal/mol (25889.0008 without restraints) Performing minimization step: 481. Total energy = 25871.4795 kcal/mol (25857.7552 without restraints) Performing minimization step: 482. Total energy = 25840.3180 kcal/mol (25826.6045 without restraints) Performing minimization step: 483. Total energy = 25809.2510 kcal/mol (25795.5483 without restraints) Performing minimization step: 484. Total energy = 25778.2773 kcal/mol (25764.5852 without restraints) Performing minimization step: 485. Total energy = 25747.3959 kcal/mol (25733.7143 without restraints) Performing minimization step: 486. Total energy = 25716.6073 kcal/mol (25702.9363 without restraints) Performing minimization step: 487. Total energy = 25685.9100 kcal/mol (25672.2492 without restraints) Performing minimization step: 488. Total energy = 25655.3032 kcal/mol (25641.6527 without restraints) Performing minimization step: 489. Total energy = 25624.7867 kcal/mol (25611.1465 without restraints) Performing minimization step: 490. Total energy = 25594.3602 kcal/mol (25580.7303 without restraints) Performing minimization step: 491. Total energy = 25564.0227 kcal/mol (25550.4028 without restraints) Performing minimization step: 492. Total energy = 25533.7740 kcal/mol (25520.1643 without restraints) Performing minimization step: 493. Total energy = 25503.6137 kcal/mol (25490.0139 without restraints) Performing minimization step: 494. Total energy = 25473.5400 kcal/mol (25459.9501 without restraints) Performing minimization step: 495. Total energy = 25443.5533 kcal/mol (25429.9733 without restraints) Performing minimization step: 496. Total energy = 25413.6528 kcal/mol (25400.0825 without restraints) Performing minimization step: 497. Total energy = 25383.8382 kcal/mol (25370.2777 without restraints) Performing minimization step: 498. Total energy = 25354.1088 kcal/mol (25340.5579 without restraints) Performing minimization step: 499. Total energy = 25324.4643 kcal/mol (25310.9230 without restraints) Performing minimization step: 500. Total energy = 25294.9038 kcal/mol (25281.3720 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 501. Total energy = 25265.4272 kcal/mol (25251.9049 without restraints) Performing minimization step: 502. Total energy = 25236.0334 kcal/mol (25222.5204 without restraints) Performing minimization step: 503. Total energy = 25206.7224 kcal/mol (25193.2189 without restraints) Performing minimization step: 504. Total energy = 25177.4927 kcal/mol (25163.9984 without restraints) Performing minimization step: 505. Total energy = 25148.3453 kcal/mol (25134.8602 without restraints) Performing minimization step: 506. Total energy = 25119.2791 kcal/mol (25105.8033 without restraints) Performing minimization step: 507. Total energy = 25090.2936 kcal/mol (25076.8269 without restraints) Performing minimization step: 508. Total energy = 25061.3880 kcal/mol (25047.9302 without restraints) Performing minimization step: 509. Total energy = 25032.5625 kcal/mol (25019.1139 without restraints) Performing minimization step: 510. Total energy = 25003.8163 kcal/mol (24990.3767 without restraints) Performing minimization step: 511. Total energy = 24975.1487 kcal/mol (24961.7178 without restraints) Performing minimization step: 512. Total energy = 24946.5594 kcal/mol (24933.1375 without restraints) Performing minimization step: 513. Total energy = 24918.0484 kcal/mol (24904.6352 without restraints) Performing minimization step: 514. Total energy = 24889.6145 kcal/mol (24876.2098 without restraints) Performing minimization step: 515. Total energy = 24861.2575 kcal/mol (24847.8617 without restraints) Performing minimization step: 516. Total energy = 24832.9770 kcal/mol (24819.5899 without restraints) Performing minimization step: 517. Total energy = 24804.7732 kcal/mol (24791.3946 without restraints) Performing minimization step: 518. Total energy = 24776.6449 kcal/mol (24763.2749 without restraints) Performing minimization step: 519. Total energy = 24748.5921 kcal/mol (24735.2307 without restraints) Performing minimization step: 520. Total energy = 24720.6145 kcal/mol (24707.2614 without restraints) Performing minimization step: 521. Total energy = 24692.7109 kcal/mol (24679.3662 without restraints) Performing minimization step: 522. Total energy = 24664.8809 kcal/mol (24651.5444 without restraints) Performing minimization step: 523. Total energy = 24637.1252 kcal/mol (24623.7971 without restraints) Performing minimization step: 524. Total energy = 24609.4424 kcal/mol (24596.1225 without restraints) Performing minimization step: 525. Total energy = 24581.8324 kcal/mol (24568.5207 without restraints) Performing minimization step: 526. Total energy = 24554.2954 kcal/mol (24540.9919 without restraints) Performing minimization step: 527. Total energy = 24526.8304 kcal/mol (24513.5350 without restraints) Performing minimization step: 528. Total energy = 24499.4371 kcal/mol (24486.1496 without restraints) Performing minimization step: 529. Total energy = 24472.1148 kcal/mol (24458.8355 without restraints) Performing minimization step: 530. Total energy = 24444.8637 kcal/mol (24431.5924 without restraints) Performing minimization step: 531. Total energy = 24417.6828 kcal/mol (24404.4193 without restraints) Performing minimization step: 532. Total energy = 24390.5729 kcal/mol (24377.3174 without restraints) Performing minimization step: 533. Total energy = 24363.5327 kcal/mol (24350.2850 without restraints) Performing minimization step: 534. Total energy = 24336.5621 kcal/mol (24323.3221 without restraints) Performing minimization step: 535. Total energy = 24309.6604 kcal/mol (24296.4282 without restraints) Performing minimization step: 536. Total energy = 24282.8279 kcal/mol (24269.6034 without restraints) Performing minimization step: 537. Total energy = 24256.0634 kcal/mol (24242.8467 without restraints) Performing minimization step: 538. Total energy = 24229.3672 kcal/mol (24216.1578 without restraints) Performing minimization step: 539. Total energy = 24202.7384 kcal/mol (24189.5366 without restraints) Performing minimization step: 540. Total energy = 24176.1769 kcal/mol (24162.9831 without restraints) Performing minimization step: 541. Total energy = 24149.6831 kcal/mol (24136.4966 without restraints) Performing minimization step: 542. Total energy = 24123.2558 kcal/mol (24110.0767 without restraints) Performing minimization step: 543. Total energy = 24096.8948 kcal/mol (24083.7231 without restraints) Performing minimization step: 544. Total energy = 24070.6005 kcal/mol (24057.4364 without restraints) Performing minimization step: 545. Total energy = 24044.3720 kcal/mol (24031.2150 without restraints) Performing minimization step: 546. Total energy = 24018.2094 kcal/mol (24005.0599 without restraints) Performing minimization step: 547. Total energy = 23992.1123 kcal/mol (23978.9700 without restraints) Performing minimization step: 548. Total energy = 23966.0798 kcal/mol (23952.9449 without restraints) Performing minimization step: 549. Total energy = 23940.1117 kcal/mol (23926.9838 without restraints) Performing minimization step: 550. Total energy = 23914.2072 kcal/mol (23901.0865 without restraints) Performing minimization step: 551. Total energy = 23888.3670 kcal/mol (23875.2536 without restraints) Performing minimization step: 552. Total energy = 23862.5908 kcal/mol (23849.4845 without restraints) Performing minimization step: 553. Total energy = 23836.8779 kcal/mol (23823.7786 without restraints) Performing minimization step: 554. Total energy = 23811.2281 kcal/mol (23798.1358 without restraints) Performing minimization step: 555. Total energy = 23785.6411 kcal/mol (23772.5558 without restraints) Performing minimization step: 556. Total energy = 23760.1166 kcal/mol (23747.0383 without restraints) Performing minimization step: 557. Total energy = 23734.6544 kcal/mol (23721.5830 without restraints) Performing minimization step: 558. Total energy = 23709.2543 kcal/mol (23696.1898 without restraints) Performing minimization step: 559. Total energy = 23683.9159 kcal/mol (23670.8584 without restraints) Performing minimization step: 560. Total energy = 23658.6386 kcal/mol (23645.5878 without restraints) Performing minimization step: 561. Total energy = 23633.4226 kcal/mol (23620.3786 without restraints) Performing minimization step: 562. Total energy = 23608.2675 kcal/mol (23595.2303 without restraints) Performing minimization step: 563. Total energy = 23583.1729 kcal/mol (23570.1425 without restraints) Performing minimization step: 564. Total energy = 23558.1390 kcal/mol (23545.1152 without restraints) Performing minimization step: 565. Total energy = 23533.1645 kcal/mol (23520.1471 without restraints) Performing minimization step: 566. Total energy = 23508.2497 kcal/mol (23495.2393 without restraints) Performing minimization step: 567. Total energy = 23483.3948 kcal/mol (23470.3909 without restraints) Performing minimization step: 568. Total energy = 23458.5995 kcal/mol (23445.6025 without restraints) Performing minimization step: 569. Total energy = 23433.8637 kcal/mol (23420.8733 without restraints) Performing minimization step: 570. Total energy = 23409.1864 kcal/mol (23396.2023 without restraints) Performing minimization step: 571. Total energy = 23384.5667 kcal/mol (23371.5891 without restraints) Performing minimization step: 572. Total energy = 23360.0064 kcal/mol (23347.0353 without restraints) Performing minimization step: 573. Total energy = 23335.5038 kcal/mol (23322.5391 without restraints) Performing minimization step: 574. Total energy = 23311.0586 kcal/mol (23298.1002 without restraints) Performing minimization step: 575. Total energy = 23286.6710 kcal/mol (23273.7191 without restraints) Performing minimization step: 576. Total energy = 23262.3414 kcal/mol (23249.3959 without restraints) Performing minimization step: 577. Total energy = 23238.0686 kcal/mol (23225.1294 without restraints) Performing minimization step: 578. Total energy = 23213.8530 kcal/mol (23200.9201 without restraints) Performing minimization step: 579. Total energy = 23189.6939 kcal/mol (23176.7672 without restraints) Performing minimization step: 580. Total energy = 23165.5915 kcal/mol (23152.6710 without restraints) Performing minimization step: 581. Total energy = 23141.5448 kcal/mol (23128.6307 without restraints) Performing minimization step: 582. Total energy = 23117.5547 kcal/mol (23104.6468 without restraints) Performing minimization step: 583. Total energy = 23093.6203 kcal/mol (23080.7184 without restraints) Performing minimization step: 584. Total energy = 23069.7410 kcal/mol (23056.8453 without restraints) Performing minimization step: 585. Total energy = 23045.9177 kcal/mol (23033.0281 without restraints) Performing minimization step: 586. Total energy = 23022.1492 kcal/mol (23009.2657 without restraints) Performing minimization step: 587. Total energy = 22998.4351 kcal/mol (22985.5577 without restraints) Performing minimization step: 588. Total energy = 22974.7758 kcal/mol (22961.9044 without restraints) Performing minimization step: 589. Total energy = 22951.1708 kcal/mol (22938.3056 without restraints) Performing minimization step: 590. Total energy = 22927.6201 kcal/mol (22914.7607 without restraints) Performing minimization step: 591. Total energy = 22904.1236 kcal/mol (22891.2702 without restraints) Performing minimization step: 592. Total energy = 22880.6807 kcal/mol (22867.8331 without restraints) Performing minimization step: 593. Total energy = 22857.2912 kcal/mol (22844.4496 without restraints) Performing minimization step: 594. Total energy = 22833.9555 kcal/mol (22821.1197 without restraints) Performing minimization step: 595. Total energy = 22810.6733 kcal/mol (22797.8435 without restraints) Performing minimization step: 596. Total energy = 22787.4435 kcal/mol (22774.6195 without restraints) Performing minimization step: 597. Total energy = 22764.2668 kcal/mol (22751.4486 without restraints) Performing minimization step: 598. Total energy = 22741.1424 kcal/mol (22728.3301 without restraints) Performing minimization step: 599. Total energy = 22718.0705 kcal/mol (22705.2639 without restraints) Performing minimization step: 600. Total energy = 22695.0509 kcal/mol (22682.2503 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 601. Total energy = 22672.0839 kcal/mol (22659.2888 without restraints) Performing minimization step: 602. Total energy = 22649.1682 kcal/mol (22636.3787 without restraints) Performing minimization step: 603. Total energy = 22626.3041 kcal/mol (22613.5203 without restraints) Performing minimization step: 604. Total energy = 22603.4920 kcal/mol (22590.7139 without restraints) Performing minimization step: 605. Total energy = 22580.7308 kcal/mol (22567.9584 without restraints) Performing minimization step: 606. Total energy = 22558.0208 kcal/mol (22545.2540 without restraints) Performing minimization step: 607. Total energy = 22535.3615 kcal/mol (22522.6003 without restraints) Performing minimization step: 608. Total energy = 22512.7529 kcal/mol (22499.9972 without restraints) Performing minimization step: 609. Total energy = 22490.1947 kcal/mol (22477.4447 without restraints) Performing minimization step: 610. Total energy = 22467.6874 kcal/mol (22454.9428 without restraints) Performing minimization step: 611. Total energy = 22445.2302 kcal/mol (22432.4911 without restraints) Performing minimization step: 612. Total energy = 22422.8229 kcal/mol (22410.0893 without restraints) Performing minimization step: 613. Total energy = 22400.4653 kcal/mol (22387.7372 without restraints) Performing minimization step: 614. Total energy = 22378.1578 kcal/mol (22365.4351 without restraints) Performing minimization step: 615. Total energy = 22355.8991 kcal/mol (22343.1819 without restraints) Performing minimization step: 616. Total energy = 22333.6906 kcal/mol (22320.9788 without restraints) Performing minimization step: 617. Total energy = 22311.5306 kcal/mol (22298.8242 without restraints) Performing minimization step: 618. Total energy = 22289.4191 kcal/mol (22276.7181 without restraints) Performing minimization step: 619. Total energy = 22267.3569 kcal/mol (22254.6612 without restraints) Performing minimization step: 620. Total energy = 22245.3433 kcal/mol (22232.6529 without restraints) Performing minimization step: 621. Total energy = 22223.3784 kcal/mol (22210.6934 without restraints) Performing minimization step: 622. Total energy = 22201.4616 kcal/mol (22188.7818 without restraints) Performing minimization step: 623. Total energy = 22179.5928 kcal/mol (22166.9184 without restraints) Performing minimization step: 624. Total energy = 22157.7723 kcal/mol (22145.1032 without restraints) Performing minimization step: 625. Total energy = 22135.9995 kcal/mol (22123.3356 without restraints) Performing minimization step: 626. Total energy = 22114.2747 kcal/mol (22101.6159 without restraints) Performing minimization step: 627. Total energy = 22092.5971 kcal/mol (22079.9435 without restraints) Performing minimization step: 628. Total energy = 22070.9666 kcal/mol (22058.3180 without restraints) Performing minimization step: 629. Total energy = 22049.3829 kcal/mol (22036.7396 without restraints) Performing minimization step: 630. Total energy = 22027.8464 kcal/mol (22015.2083 without restraints) Performing minimization step: 631. Total energy = 22006.3568 kcal/mol (21993.7238 without restraints) Performing minimization step: 632. Total energy = 21984.9141 kcal/mol (21972.2861 without restraints) Performing minimization step: 633. Total energy = 21963.5187 kcal/mol (21950.8959 without restraints) Performing minimization step: 634. Total energy = 21942.1688 kcal/mol (21929.5509 without restraints) Performing minimization step: 635. Total energy = 21920.8654 kcal/mol (21908.2526 without restraints) Performing minimization step: 636. Total energy = 21899.6080 kcal/mol (21887.0003 without restraints) Performing minimization step: 637. Total energy = 21878.3969 kcal/mol (21865.7943 without restraints) Performing minimization step: 638. Total energy = 21857.2318 kcal/mol (21844.6343 without restraints) Performing minimization step: 639. Total energy = 21836.1124 kcal/mol (21823.5197 without restraints) Performing minimization step: 640. Total energy = 21815.0382 kcal/mol (21802.4504 without restraints) Performing minimization step: 641. Total energy = 21794.0098 kcal/mol (21781.4271 without restraints) Performing minimization step: 642. Total energy = 21773.0262 kcal/mol (21760.4482 without restraints) Performing minimization step: 643. Total energy = 21752.0873 kcal/mol (21739.5143 without restraints) Performing minimization step: 644. Total energy = 21731.1937 kcal/mol (21718.6257 without restraints) Performing minimization step: 645. Total energy = 21710.3448 kcal/mol (21697.7816 without restraints) Performing minimization step: 646. Total energy = 21689.5411 kcal/mol (21676.9828 without restraints) Performing minimization step: 647. Total energy = 21668.7808 kcal/mol (21656.2272 without restraints) Performing minimization step: 648. Total energy = 21648.0652 kcal/mol (21635.5166 without restraints) Performing minimization step: 649. Total energy = 21627.3938 kcal/mol (21614.8499 without restraints) Performing minimization step: 650. Total energy = 21606.7669 kcal/mol (21594.2279 without restraints) Performing minimization step: 651. Total energy = 21586.1840 kcal/mol (21573.6498 without restraints) Performing minimization step: 652. Total energy = 21565.6449 kcal/mol (21553.1155 without restraints) Performing minimization step: 653. Total energy = 21545.1494 kcal/mol (21532.6245 without restraints) Performing minimization step: 654. Total energy = 21524.6977 kcal/mol (21512.1778 without restraints) Performing minimization step: 655. Total energy = 21504.2893 kcal/mol (21491.7741 without restraints) Performing minimization step: 656. Total energy = 21483.9239 kcal/mol (21471.4133 without restraints) Performing minimization step: 657. Total energy = 21463.6013 kcal/mol (21451.0951 without restraints) Performing minimization step: 658. Total energy = 21443.3220 kcal/mol (21430.8208 without restraints) Performing minimization step: 659. Total energy = 21423.0853 kcal/mol (21410.5887 without restraints) Performing minimization step: 660. Total energy = 21402.8919 kcal/mol (21390.4000 without restraints) Performing minimization step: 661. Total energy = 21382.7414 kcal/mol (21370.2541 without restraints) Performing minimization step: 662. Total energy = 21362.6331 kcal/mol (21350.1503 without restraints) Performing minimization step: 663. Total energy = 21342.5672 kcal/mol (21330.0890 without restraints) Performing minimization step: 664. Total energy = 21322.5441 kcal/mol (21310.0707 without restraints) Performing minimization step: 665. Total energy = 21302.5625 kcal/mol (21290.0937 without restraints) Performing minimization step: 666. Total energy = 21282.6233 kcal/mol (21270.1590 without restraints) Performing minimization step: 667. Total energy = 21262.7254 kcal/mol (21250.2656 without restraints) Performing minimization step: 668. Total energy = 21242.8691 kcal/mol (21230.4138 without restraints) Performing minimization step: 669. Total energy = 21223.0548 kcal/mol (21210.6041 without restraints) Performing minimization step: 670. Total energy = 21203.2823 kcal/mol (21190.8361 without restraints) Performing minimization step: 671. Total energy = 21183.5513 kcal/mol (21171.1094 without restraints) Performing minimization step: 672. Total energy = 21163.8610 kcal/mol (21151.4237 without restraints) Performing minimization step: 673. Total energy = 21144.2126 kcal/mol (21131.7796 without restraints) Performing minimization step: 674. Total energy = 21124.6046 kcal/mol (21112.1762 without restraints) Performing minimization step: 675. Total energy = 21105.0378 kcal/mol (21092.6138 without restraints) Performing minimization step: 676. Total energy = 21085.5114 kcal/mol (21073.0917 without restraints) Performing minimization step: 677. Total energy = 21066.0261 kcal/mol (21053.6109 without restraints) Performing minimization step: 678. Total energy = 21046.5808 kcal/mol (21034.1699 without restraints) Performing minimization step: 679. Total energy = 21027.1759 kcal/mol (21014.7695 without restraints) Performing minimization step: 680. Total energy = 21007.8116 kcal/mol (20995.4095 without restraints) Performing minimization step: 681. Total energy = 20988.4876 kcal/mol (20976.0901 without restraints) Performing minimization step: 682. Total energy = 20969.2037 kcal/mol (20956.8103 without restraints) Performing minimization step: 683. Total energy = 20949.9590 kcal/mol (20937.5699 without restraints) Performing minimization step: 684. Total energy = 20930.7545 kcal/mol (20918.3697 without restraints) Performing minimization step: 685. Total energy = 20911.5895 kcal/mol (20899.2090 without restraints) Performing minimization step: 686. Total energy = 20892.4647 kcal/mol (20880.0885 without restraints) Performing minimization step: 687. Total energy = 20873.3803 kcal/mol (20861.0082 without restraints) Performing minimization step: 688. Total energy = 20854.3346 kcal/mol (20841.9669 without restraints) Performing minimization step: 689. Total energy = 20835.3285 kcal/mol (20822.9651 without restraints) Performing minimization step: 690. Total energy = 20816.3609 kcal/mol (20804.0017 without restraints) Performing minimization step: 691. Total energy = 20797.4317 kcal/mol (20785.0767 without restraints) Performing minimization step: 692. Total energy = 20778.5417 kcal/mol (20766.1909 without restraints) Performing minimization step: 693. Total energy = 20759.6910 kcal/mol (20747.3445 without restraints) Performing minimization step: 694. Total energy = 20740.8789 kcal/mol (20728.5364 without restraints) Performing minimization step: 695. Total energy = 20722.1055 kcal/mol (20709.7670 without restraints) Performing minimization step: 696. Total energy = 20703.3702 kcal/mol (20691.0361 without restraints) Performing minimization step: 697. Total energy = 20684.6733 kcal/mol (20672.3434 without restraints) Performing minimization step: 698. Total energy = 20666.0149 kcal/mol (20653.6892 without restraints) Performing minimization step: 699. Total energy = 20647.3947 kcal/mol (20635.0730 without restraints) Performing minimization step: 700. Total energy = 20628.8133 kcal/mol (20616.4956 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 701. Total energy = 20610.2687 kcal/mol (20597.9551 without restraints) Performing minimization step: 702. Total energy = 20591.7623 kcal/mol (20579.4528 without restraints) Performing minimization step: 703. Total energy = 20573.2935 kcal/mol (20560.9882 without restraints) Performing minimization step: 704. Total energy = 20554.8622 kcal/mol (20542.5608 without restraints) Performing minimization step: 705. Total energy = 20536.4686 kcal/mol (20524.1713 without restraints) Performing minimization step: 706. Total energy = 20518.1122 kcal/mol (20505.8189 without restraints) Performing minimization step: 707. Total energy = 20499.7932 kcal/mol (20487.5039 without restraints) Performing minimization step: 708. Total energy = 20481.5110 kcal/mol (20469.2258 without restraints) Performing minimization step: 709. Total energy = 20463.2665 kcal/mol (20450.9852 without restraints) Performing minimization step: 710. Total energy = 20445.0590 kcal/mol (20432.7817 without restraints) Performing minimization step: 711. Total energy = 20426.8885 kcal/mol (20414.6151 without restraints) Performing minimization step: 712. Total energy = 20408.7547 kcal/mol (20396.4853 without restraints) Performing minimization step: 713. Total energy = 20390.6577 kcal/mol (20378.3922 without restraints) Performing minimization step: 714. Total energy = 20372.5973 kcal/mol (20360.3357 without restraints) Performing minimization step: 715. Total energy = 20354.5730 kcal/mol (20342.3154 without restraints) Performing minimization step: 716. Total energy = 20336.5858 kcal/mol (20324.3321 without restraints) Performing minimization step: 717. Total energy = 20318.6348 kcal/mol (20306.3851 without restraints) Performing minimization step: 718. Total energy = 20300.7198 kcal/mol (20288.4741 without restraints) Performing minimization step: 719. Total energy = 20282.8411 kcal/mol (20270.5991 without restraints) Performing minimization step: 720. Total energy = 20264.9980 kcal/mol (20252.7597 without restraints) Performing minimization step: 721. Total energy = 20247.1908 kcal/mol (20234.9565 without restraints) Performing minimization step: 722. Total energy = 20229.4200 kcal/mol (20217.1896 without restraints) Performing minimization step: 723. Total energy = 20211.6840 kcal/mol (20199.4573 without restraints) Performing minimization step: 724. Total energy = 20193.9839 kcal/mol (20181.7610 without restraints) Performing minimization step: 725. Total energy = 20176.3194 kcal/mol (20164.1004 without restraints) Performing minimization step: 726. Total energy = 20158.6904 kcal/mol (20146.4753 without restraints) Performing minimization step: 727. Total energy = 20141.0969 kcal/mol (20128.8855 without restraints) Performing minimization step: 728. Total energy = 20123.5386 kcal/mol (20111.3310 without restraints) Performing minimization step: 729. Total energy = 20106.0157 kcal/mol (20093.8119 without restraints) Performing minimization step: 730. Total energy = 20088.5276 kcal/mol (20076.3276 without restraints) Performing minimization step: 731. Total energy = 20071.0743 kcal/mol (20058.8779 without restraints) Performing minimization step: 732. Total energy = 20053.6562 kcal/mol (20041.4636 without restraints) Performing minimization step: 733. Total energy = 20036.2723 kcal/mol (20024.0834 without restraints) Performing minimization step: 734. Total energy = 20018.9234 kcal/mol (20006.7383 without restraints) Performing minimization step: 735. Total energy = 20001.6087 kcal/mol (19989.4273 without restraints) Performing minimization step: 736. Total energy = 19984.3287 kcal/mol (19972.1510 without restraints) Performing minimization step: 737. Total energy = 19967.0831 kcal/mol (19954.9091 without restraints) Performing minimization step: 738. Total energy = 19949.8715 kcal/mol (19937.7011 without restraints) Performing minimization step: 739. Total energy = 19932.6937 kcal/mol (19920.5271 without restraints) Performing minimization step: 740. Total energy = 19915.5510 kcal/mol (19903.3881 without restraints) Performing minimization step: 741. Total energy = 19898.4420 kcal/mol (19886.2825 without restraints) Performing minimization step: 742. Total energy = 19881.3670 kcal/mol (19869.2112 without restraints) Performing minimization step: 743. Total energy = 19864.3256 kcal/mol (19852.1735 without restraints) Performing minimization step: 744. Total energy = 19847.3176 kcal/mol (19835.1692 without restraints) Performing minimization step: 745. Total energy = 19830.3441 kcal/mol (19818.1992 without restraints) Performing minimization step: 746. Total energy = 19813.4039 kcal/mol (19801.2626 without restraints) Performing minimization step: 747. Total energy = 19796.4972 kcal/mol (19784.3595 without restraints) Performing minimization step: 748. Total energy = 19779.6238 kcal/mol (19767.4896 without restraints) Performing minimization step: 749. Total energy = 19762.7837 kcal/mol (19750.6531 without restraints) Performing minimization step: 750. Total energy = 19745.9759 kcal/mol (19733.8489 without restraints) Performing minimization step: 751. Total energy = 19729.2015 kcal/mol (19717.0780 without restraints) Performing minimization step: 752. Total energy = 19712.4610 kcal/mol (19700.3412 without restraints) Performing minimization step: 753. Total energy = 19695.7525 kcal/mol (19683.6362 without restraints) Performing minimization step: 754. Total energy = 19679.0772 kcal/mol (19666.9643 without restraints) Performing minimization step: 755. Total energy = 19662.4350 kcal/mol (19650.3256 without restraints) Performing minimization step: 756. Total energy = 19645.8250 kcal/mol (19633.7191 without restraints) Performing minimization step: 757. Total energy = 19629.2477 kcal/mol (19617.1453 without restraints) Performing minimization step: 758. Total energy = 19612.7022 kcal/mol (19600.6032 without restraints) Performing minimization step: 759. Total energy = 19596.1898 kcal/mol (19584.0942 without restraints) Performing minimization step: 760. Total energy = 19579.7094 kcal/mol (19567.6174 without restraints) Performing minimization step: 761. Total energy = 19563.2615 kcal/mol (19551.1730 without restraints) Performing minimization step: 762. Total energy = 19546.8457 kcal/mol (19534.7606 without restraints) Performing minimization step: 763. Total energy = 19530.4625 kcal/mol (19518.3810 without restraints) Performing minimization step: 764. Total energy = 19514.1112 kcal/mol (19502.0329 without restraints) Performing minimization step: 765. Total energy = 19497.7910 kcal/mol (19485.7163 without restraints) Performing minimization step: 766. Total energy = 19481.5037 kcal/mol (19469.4323 without restraints) Performing minimization step: 767. Total energy = 19465.2477 kcal/mol (19453.1796 without restraints) Performing minimization step: 768. Total energy = 19449.0236 kcal/mol (19436.9590 without restraints) Performing minimization step: 769. Total energy = 19432.8308 kcal/mol (19420.7695 without restraints) Performing minimization step: 770. Total energy = 19416.6697 kcal/mol (19404.6118 without restraints) Performing minimization step: 771. Total energy = 19400.5398 kcal/mol (19388.4852 without restraints) Performing minimization step: 772. Total energy = 19384.4411 kcal/mol (19372.3898 without restraints) Performing minimization step: 773. Total energy = 19368.3736 kcal/mol (19356.3257 without restraints) Performing minimization step: 774. Total energy = 19352.3367 kcal/mol (19340.2918 without restraints) Performing minimization step: 775. Total energy = 19336.3308 kcal/mol (19324.2895 without restraints) Performing minimization step: 776. Total energy = 19320.3559 kcal/mol (19308.3178 without restraints) Performing minimization step: 777. Total energy = 19304.4117 kcal/mol (19292.3771 without restraints) Performing minimization step: 778. Total energy = 19288.4994 kcal/mol (19276.4680 without restraints) Performing minimization step: 779. Total energy = 19272.6180 kcal/mol (19260.5899 without restraints) Performing minimization step: 780. Total energy = 19256.7668 kcal/mol (19244.7420 without restraints) Performing minimization step: 781. Total energy = 19240.9460 kcal/mol (19228.9244 without restraints) Performing minimization step: 782. Total energy = 19225.1557 kcal/mol (19213.1374 without restraints) Performing minimization step: 783. Total energy = 19209.3959 kcal/mol (19197.3809 without restraints) Performing minimization step: 784. Total energy = 19193.6663 kcal/mol (19181.6545 without restraints) Performing minimization step: 785. Total energy = 19177.9662 kcal/mol (19165.9576 without restraints) Performing minimization step: 786. Total energy = 19162.2973 kcal/mol (19150.2920 without restraints) Performing minimization step: 787. Total energy = 19146.6582 kcal/mol (19134.6561 without restraints) Performing minimization step: 788. Total energy = 19131.0493 kcal/mol (19119.0504 without restraints) Performing minimization step: 789. Total energy = 19115.4701 kcal/mol (19103.4743 without restraints) Performing minimization step: 790. Total energy = 19099.9210 kcal/mol (19087.9285 without restraints) Performing minimization step: 791. Total energy = 19084.4015 kcal/mol (19072.4121 without restraints) Performing minimization step: 792. Total energy = 19068.9115 kcal/mol (19056.9253 without restraints) Performing minimization step: 793. Total energy = 19053.4512 kcal/mol (19041.4681 without restraints) Performing minimization step: 794. Total energy = 19038.0211 kcal/mol (19026.0412 without restraints) Performing minimization step: 795. Total energy = 19022.6195 kcal/mol (19010.6428 without restraints) Performing minimization step: 796. Total energy = 19007.2474 kcal/mol (18995.2739 without restraints) Performing minimization step: 797. Total energy = 18991.9050 kcal/mol (18979.9346 without restraints) Performing minimization step: 798. Total energy = 18976.5919 kcal/mol (18964.6245 without restraints) Performing minimization step: 799. Total energy = 18961.3077 kcal/mol (18949.3434 without restraints) Performing minimization step: 800. Total energy = 18946.0525 kcal/mol (18934.0913 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 801. Total energy = 18930.8269 kcal/mol (18918.8690 without restraints) Performing minimization step: 802. Total energy = 18915.6302 kcal/mol (18903.6753 without restraints) Performing minimization step: 803. Total energy = 18900.4617 kcal/mol (18888.5099 without restraints) Performing minimization step: 804. Total energy = 18885.3219 kcal/mol (18873.3732 without restraints) Performing minimization step: 805. Total energy = 18870.2111 kcal/mol (18858.2654 without restraints) Performing minimization step: 806. Total energy = 18855.1290 kcal/mol (18843.1864 without restraints) Performing minimization step: 807. Total energy = 18840.0753 kcal/mol (18828.1357 without restraints) Performing minimization step: 808. Total energy = 18825.0499 kcal/mol (18813.1133 without restraints) Performing minimization step: 809. Total energy = 18810.0532 kcal/mol (18798.1196 without restraints) Performing minimization step: 810. Total energy = 18795.0843 kcal/mol (18783.1536 without restraints) Performing minimization step: 811. Total energy = 18780.1440 kcal/mol (18768.2165 without restraints) Performing minimization step: 812. Total energy = 18765.2318 kcal/mol (18753.3073 without restraints) Performing minimization step: 813. Total energy = 18750.3476 kcal/mol (18738.4262 without restraints) Performing minimization step: 814. Total energy = 18735.4913 kcal/mol (18723.5728 without restraints) Performing minimization step: 815. Total energy = 18720.6638 kcal/mol (18708.7485 without restraints) Performing minimization step: 816. Total energy = 18705.8635 kcal/mol (18693.9509 without restraints) Performing minimization step: 817. Total energy = 18691.0905 kcal/mol (18679.1811 without restraints) Performing minimization step: 818. Total energy = 18676.3458 kcal/mol (18664.4394 without restraints) Performing minimization step: 819. Total energy = 18661.6292 kcal/mol (18649.7256 without restraints) Performing minimization step: 820. Total energy = 18646.9398 kcal/mol (18635.0392 without restraints) Performing minimization step: 821. Total energy = 18632.2777 kcal/mol (18620.3800 without restraints) Performing minimization step: 822. Total energy = 18617.6433 kcal/mol (18605.7485 without restraints) Performing minimization step: 823. Total energy = 18603.0361 kcal/mol (18591.1443 without restraints) Performing minimization step: 824. Total energy = 18588.4561 kcal/mol (18576.5672 without restraints) Performing minimization step: 825. Total energy = 18573.9036 kcal/mol (18562.0177 without restraints) Performing minimization step: 826. Total energy = 18559.3779 kcal/mol (18547.4948 without restraints) Performing minimization step: 827. Total energy = 18544.8797 kcal/mol (18532.9995 without restraints) Performing minimization step: 828. Total energy = 18530.4087 kcal/mol (18518.5314 without restraints) Performing minimization step: 829. Total energy = 18515.9640 kcal/mol (18504.0895 without restraints) Performing minimization step: 830. Total energy = 18501.5466 kcal/mol (18489.6750 without restraints) Performing minimization step: 831. Total energy = 18487.1556 kcal/mol (18475.2869 without restraints) Performing minimization step: 832. Total energy = 18472.7913 kcal/mol (18460.9253 without restraints) Performing minimization step: 833. Total energy = 18458.4541 kcal/mol (18446.5912 without restraints) Performing minimization step: 834. Total energy = 18444.1436 kcal/mol (18432.2834 without restraints) Performing minimization step: 835. Total energy = 18429.8593 kcal/mol (18418.0020 without restraints) Performing minimization step: 836. Total energy = 18415.6014 kcal/mol (18403.7468 without restraints) Performing minimization step: 837. Total energy = 18401.3695 kcal/mol (18389.5178 without restraints) Performing minimization step: 838. Total energy = 18387.1642 kcal/mol (18375.3153 without restraints) Performing minimization step: 839. Total energy = 18372.9851 kcal/mol (18361.1390 without restraints) Performing minimization step: 840. Total energy = 18358.8328 kcal/mol (18346.9899 without restraints) Performing minimization step: 841. Total energy = 18344.7062 kcal/mol (18332.8657 without restraints) Performing minimization step: 842. Total energy = 18330.6056 kcal/mol (18318.7678 without restraints) Performing minimization step: 843. Total energy = 18316.5309 kcal/mol (18304.6959 without restraints) Performing minimization step: 844. Total energy = 18302.4818 kcal/mol (18290.6495 without restraints) Performing minimization step: 845. Total energy = 18288.4581 kcal/mol (18276.6287 without restraints) Performing minimization step: 846. Total energy = 18274.4609 kcal/mol (18262.6342 without restraints) Performing minimization step: 847. Total energy = 18260.4893 kcal/mol (18248.6654 without restraints) Performing minimization step: 848. Total energy = 18246.5430 kcal/mol (18234.7218 without restraints) Performing minimization step: 849. Total energy = 18232.6224 kcal/mol (18220.8038 without restraints) Performing minimization step: 850. Total energy = 18218.7264 kcal/mol (18206.9107 without restraints) Performing minimization step: 851. Total energy = 18204.8567 kcal/mol (18193.0437 without restraints) Performing minimization step: 852. Total energy = 18191.0123 kcal/mol (18179.2020 without restraints) Performing minimization step: 853. Total energy = 18177.1928 kcal/mol (18165.3853 without restraints) Performing minimization step: 854. Total energy = 18163.3993 kcal/mol (18151.5945 without restraints) Performing minimization step: 855. Total energy = 18149.6302 kcal/mol (18137.8280 without restraints) Performing minimization step: 856. Total energy = 18135.8867 kcal/mol (18124.0875 without restraints) Performing minimization step: 857. Total energy = 18122.1679 kcal/mol (18110.3711 without restraints) Performing minimization step: 858. Total energy = 18108.4742 kcal/mol (18096.6802 without restraints) Performing minimization step: 859. Total energy = 18094.8053 kcal/mol (18083.0137 without restraints) Performing minimization step: 860. Total energy = 18081.1602 kcal/mol (18069.3715 without restraints) Performing minimization step: 861. Total energy = 18067.5410 kcal/mol (18055.7549 without restraints) Performing minimization step: 862. Total energy = 18053.9464 kcal/mol (18042.1629 without restraints) Performing minimization step: 863. Total energy = 18040.3759 kcal/mol (18028.5951 without restraints) Performing minimization step: 864. Total energy = 18026.8306 kcal/mol (18015.0524 without restraints) Performing minimization step: 865. Total energy = 18013.3095 kcal/mol (18001.5339 without restraints) Performing minimization step: 866. Total energy = 17999.8134 kcal/mol (17988.0407 without restraints) Performing minimization step: 867. Total energy = 17986.3415 kcal/mol (17974.5712 without restraints) Performing minimization step: 868. Total energy = 17972.8936 kcal/mol (17961.1259 without restraints) Performing minimization step: 869. Total energy = 17959.4700 kcal/mol (17947.7048 without restraints) Performing minimization step: 870. Total energy = 17946.0705 kcal/mol (17934.3080 without restraints) Performing minimization step: 871. Total energy = 17932.6956 kcal/mol (17920.9358 without restraints) Performing minimization step: 872. Total energy = 17919.3446 kcal/mol (17907.5873 without restraints) Performing minimization step: 873. Total energy = 17906.0172 kcal/mol (17894.2624 without restraints) Performing minimization step: 874. Total energy = 17892.7139 kcal/mol (17880.9618 without restraints) Performing minimization step: 875. Total energy = 17879.4343 kcal/mol (17867.6847 without restraints) Performing minimization step: 876. Total energy = 17866.1780 kcal/mol (17854.4310 without restraints) Performing minimization step: 877. Total energy = 17852.9462 kcal/mol (17841.2017 without restraints) Performing minimization step: 878. Total energy = 17839.7380 kcal/mol (17827.9963 without restraints) Performing minimization step: 879. Total energy = 17826.5535 kcal/mol (17814.8141 without restraints) Performing minimization step: 880. Total energy = 17813.3921 kcal/mol (17801.6552 without restraints) Performing minimization step: 881. Total energy = 17800.2543 kcal/mol (17788.5200 without restraints) Performing minimization step: 882. Total energy = 17787.1399 kcal/mol (17775.4081 without restraints) Performing minimization step: 883. Total energy = 17774.0487 kcal/mol (17762.3194 without restraints) Performing minimization step: 884. Total energy = 17760.9811 kcal/mol (17749.2544 without restraints) Performing minimization step: 885. Total energy = 17747.9365 kcal/mol (17736.2122 without restraints) Performing minimization step: 886. Total energy = 17734.9154 kcal/mol (17723.1936 without restraints) Performing minimization step: 887. Total energy = 17721.9176 kcal/mol (17710.1982 without restraints) Performing minimization step: 888. Total energy = 17708.9419 kcal/mol (17697.2250 without restraints) Performing minimization step: 889. Total energy = 17695.9895 kcal/mol (17684.2753 without restraints) Performing minimization step: 890. Total energy = 17683.0601 kcal/mol (17671.3480 without restraints) Performing minimization step: 891. Total energy = 17670.1543 kcal/mol (17658.4438 without restraints) Performing minimization step: 892. Total energy = 17657.2697 kcal/mol (17645.5627 without restraints) Performing minimization step: 893. Total energy = 17644.4090 kcal/mol (17632.7045 without restraints) Performing minimization step: 894. Total energy = 17631.5709 kcal/mol (17619.8689 without restraints) Performing minimization step: 895. Total energy = 17618.7554 kcal/mol (17607.0558 without restraints) Performing minimization step: 896. Total energy = 17605.9631 kcal/mol (17594.2659 without restraints) Performing minimization step: 897. Total energy = 17593.1925 kcal/mol (17581.4976 without restraints) Performing minimization step: 898. Total energy = 17580.4445 kcal/mol (17568.7522 without restraints) Performing minimization step: 899. Total energy = 17567.7189 kcal/mol (17556.0292 without restraints) Performing minimization step: 900. Total energy = 17555.0159 kcal/mol (17543.3284 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 901. Total energy = 17542.3352 kcal/mol (17530.6501 without restraints) Performing minimization step: 902. Total energy = 17529.6766 kcal/mol (17517.9940 without restraints) Performing minimization step: 903. Total energy = 17517.0399 kcal/mol (17505.3596 without restraints) Performing minimization step: 904. Total energy = 17504.4253 kcal/mol (17492.7474 without restraints) Performing minimization step: 905. Total energy = 17491.8327 kcal/mol (17480.1572 without restraints) Performing minimization step: 906. Total energy = 17479.2621 kcal/mol (17467.5889 without restraints) Performing minimization step: 907. Total energy = 17466.7134 kcal/mol (17455.0427 without restraints) Performing minimization step: 908. Total energy = 17454.1868 kcal/mol (17442.5185 without restraints) Performing minimization step: 909. Total energy = 17441.6822 kcal/mol (17430.0160 without restraints) Performing minimization step: 910. Total energy = 17429.1991 kcal/mol (17417.5355 without restraints) Performing minimization step: 911. Total energy = 17416.7373 kcal/mol (17405.0760 without restraints) Performing minimization step: 912. Total energy = 17404.2967 kcal/mol (17392.6378 without restraints) Performing minimization step: 913. Total energy = 17391.8782 kcal/mol (17380.2218 without restraints) Performing minimization step: 914. Total energy = 17379.4816 kcal/mol (17367.8273 without restraints) Performing minimization step: 915. Total energy = 17367.1062 kcal/mol (17355.4543 without restraints) Performing minimization step: 916. Total energy = 17354.7520 kcal/mol (17343.1023 without restraints) Performing minimization step: 917. Total energy = 17342.4191 kcal/mol (17330.7718 without restraints) Performing minimization step: 918. Total energy = 17330.1077 kcal/mol (17318.4627 without restraints) Performing minimization step: 919. Total energy = 17317.8173 kcal/mol (17306.1747 without restraints) Performing minimization step: 920. Total energy = 17305.5482 kcal/mol (17293.9079 without restraints) Performing minimization step: 921. Total energy = 17293.3005 kcal/mol (17281.6625 without restraints) Performing minimization step: 922. Total energy = 17281.0738 kcal/mol (17269.4381 without restraints) Performing minimization step: 923. Total energy = 17268.8683 kcal/mol (17257.2350 without restraints) Performing minimization step: 924. Total energy = 17256.6837 kcal/mol (17245.0526 without restraints) Performing minimization step: 925. Total energy = 17244.5201 kcal/mol (17232.8914 without restraints) Performing minimization step: 926. Total energy = 17232.3773 kcal/mol (17220.7507 without restraints) Performing minimization step: 927. Total energy = 17220.2550 kcal/mol (17208.6307 without restraints) Performing minimization step: 928. Total energy = 17208.1534 kcal/mol (17196.5313 without restraints) Performing minimization step: 929. Total energy = 17196.0728 kcal/mol (17184.4530 without restraints) Performing minimization step: 930. Total energy = 17184.0127 kcal/mol (17172.3951 without restraints) Performing minimization step: 931. Total energy = 17171.9735 kcal/mol (17160.3581 without restraints) Performing minimization step: 932. Total energy = 17159.9545 kcal/mol (17148.3414 without restraints) Performing minimization step: 933. Total energy = 17147.9556 kcal/mol (17136.3448 without restraints) Performing minimization step: 934. Total energy = 17135.9776 kcal/mol (17124.3690 without restraints) Performing minimization step: 935. Total energy = 17124.0200 kcal/mol (17112.4137 without restraints) Performing minimization step: 936. Total energy = 17112.0826 kcal/mol (17100.4785 without restraints) Performing minimization step: 937. Total energy = 17100.1659 kcal/mol (17088.5641 without restraints) Performing minimization step: 938. Total energy = 17088.2694 kcal/mol (17076.6698 without restraints) Performing minimization step: 939. Total energy = 17076.3930 kcal/mol (17064.7955 without restraints) Performing minimization step: 940. Total energy = 17064.5362 kcal/mol (17052.9408 without restraints) Performing minimization step: 941. Total energy = 17052.6998 kcal/mol (17041.1068 without restraints) Performing minimization step: 942. Total energy = 17040.8831 kcal/mol (17029.2921 without restraints) Performing minimization step: 943. Total energy = 17029.0860 kcal/mol (17017.4970 without restraints) Performing minimization step: 944. Total energy = 17017.3092 kcal/mol (17005.7226 without restraints) Performing minimization step: 945. Total energy = 17005.5523 kcal/mol (16993.9680 without restraints) Performing minimization step: 946. Total energy = 16993.8151 kcal/mol (16982.2329 without restraints) Performing minimization step: 947. Total energy = 16982.0979 kcal/mol (16970.5178 without restraints) Performing minimization step: 948. Total energy = 16970.4000 kcal/mol (16958.8222 without restraints) Performing minimization step: 949. Total energy = 16958.7219 kcal/mol (16947.1462 without restraints) Performing minimization step: 950. Total energy = 16947.0632 kcal/mol (16935.4896 without restraints) Performing minimization step: 951. Total energy = 16935.4242 kcal/mol (16923.8528 without restraints) Performing minimization step: 952. Total energy = 16923.8046 kcal/mol (16912.2354 without restraints) Performing minimization step: 953. Total energy = 16912.2054 kcal/mol (16900.6383 without restraints) Performing minimization step: 954. Total energy = 16900.6249 kcal/mol (16889.0598 without restraints) Performing minimization step: 955. Total energy = 16889.0644 kcal/mol (16877.5017 without restraints) Performing minimization step: 956. Total energy = 16877.5225 kcal/mol (16865.9618 without restraints) Performing minimization step: 957. Total energy = 16865.9998 kcal/mol (16854.4413 without restraints) Performing minimization step: 958. Total energy = 16854.4963 kcal/mol (16842.9398 without restraints) Performing minimization step: 959. Total energy = 16843.0121 kcal/mol (16831.4577 without restraints) Performing minimization step: 960. Total energy = 16831.5469 kcal/mol (16819.9947 without restraints) Performing minimization step: 961. Total energy = 16820.1002 kcal/mol (16808.5500 without restraints) Performing minimization step: 962. Total energy = 16808.6729 kcal/mol (16797.1248 without restraints) Performing minimization step: 963. Total energy = 16797.2645 kcal/mol (16785.7187 without restraints) Performing minimization step: 964. Total energy = 16785.8749 kcal/mol (16774.3312 without restraints) Performing minimization step: 965. Total energy = 16774.5044 kcal/mol (16762.9628 without restraints) Performing minimization step: 966. Total energy = 16763.1529 kcal/mol (16751.6132 without restraints) Performing minimization step: 967. Total energy = 16751.8196 kcal/mol (16740.2820 without restraints) Performing minimization step: 968. Total energy = 16740.5051 kcal/mol (16728.9696 without restraints) Performing minimization step: 969. Total energy = 16729.2088 kcal/mol (16717.6750 without restraints) Performing minimization step: 970. Total energy = 16717.9309 kcal/mol (16706.3996 without restraints) Performing minimization step: 971. Total energy = 16706.6724 kcal/mol (16695.1430 without restraints) Performing minimization step: 972. Total energy = 16695.4320 kcal/mol (16683.9047 without restraints) Performing minimization step: 973. Total energy = 16684.2096 kcal/mol (16672.6844 without restraints) Performing minimization step: 974. Total energy = 16673.0063 kcal/mol (16661.4831 without restraints) Performing minimization step: 975. Total energy = 16661.8211 kcal/mol (16650.2999 without restraints) Performing minimization step: 976. Total energy = 16650.6543 kcal/mol (16639.1352 without restraints) Performing minimization step: 977. Total energy = 16639.5061 kcal/mol (16627.9891 without restraints) Performing minimization step: 978. Total energy = 16628.3759 kcal/mol (16616.8607 without restraints) Performing minimization step: 979. Total energy = 16617.2638 kcal/mol (16605.7509 without restraints) Performing minimization step: 980. Total energy = 16606.1697 kcal/mol (16594.6588 without restraints) Performing minimization step: 981. Total energy = 16595.0942 kcal/mol (16583.5852 without restraints) Performing minimization step: 982. Total energy = 16584.0355 kcal/mol (16572.5286 without restraints) Performing minimization step: 983. Total energy = 16572.9958 kcal/mol (16561.4909 without restraints) Performing minimization step: 984. Total energy = 16561.9737 kcal/mol (16550.4708 without restraints) Performing minimization step: 985. Total energy = 16550.9698 kcal/mol (16539.4686 without restraints) Performing minimization step: 986. Total energy = 16539.9834 kcal/mol (16528.4845 without restraints) Performing minimization step: 987. Total energy = 16529.0146 kcal/mol (16517.5176 without restraints) Performing minimization step: 988. Total energy = 16518.0640 kcal/mol (16506.5690 without restraints) Performing minimization step: 989. Total energy = 16507.1307 kcal/mol (16495.6377 without restraints) Performing minimization step: 990. Total energy = 16496.2153 kcal/mol (16484.7243 without restraints) Performing minimization step: 991. Total energy = 16485.3179 kcal/mol (16473.8289 without restraints) Performing minimization step: 992. Total energy = 16474.4384 kcal/mol (16462.9515 without restraints) Performing minimization step: 993. Total energy = 16463.5759 kcal/mol (16452.0908 without restraints) Performing minimization step: 994. Total energy = 16452.7306 kcal/mol (16441.2475 without restraints) Performing minimization step: 995. Total energy = 16441.9031 kcal/mol (16430.4220 without restraints) Performing minimization step: 996. Total energy = 16431.0930 kcal/mol (16419.6139 without restraints) Performing minimization step: 997. Total energy = 16420.3001 kcal/mol (16408.8229 without restraints) Performing minimization step: 998. Total energy = 16409.5243 kcal/mol (16398.0491 without restraints) Performing minimization step: 999. Total energy = 16398.7659 kcal/mol (16387.2927 without restraints) Performing minimization step: 1000. Total energy = 16388.0249 kcal/mol (16376.5536 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 16377.3013 kcal/mol (16365.8320 without restraints) Performing minimization step: 1002. Total energy = 16366.5947 kcal/mol (16355.1273 without restraints) Performing minimization step: 1003. Total energy = 16355.9053 kcal/mol (16344.4397 without restraints) Performing minimization step: 1004. Total energy = 16345.2330 kcal/mol (16333.7694 without restraints) Performing minimization step: 1005. Total energy = 16334.5777 kcal/mol (16323.1161 without restraints) Performing minimization step: 1006. Total energy = 16323.9397 kcal/mol (16312.4800 without restraints) Performing minimization step: 1007. Total energy = 16313.3181 kcal/mol (16301.8603 without restraints) Performing minimization step: 1008. Total energy = 16302.7131 kcal/mol (16291.2572 without restraints) Performing minimization step: 1009. Total energy = 16292.1254 kcal/mol (16280.6715 without restraints) Performing minimization step: 1010. Total energy = 16281.5545 kcal/mol (16270.1024 without restraints) Performing minimization step: 1011. Total energy = 16271.0004 kcal/mol (16259.5503 without restraints) Performing minimization step: 1012. Total energy = 16260.4633 kcal/mol (16249.0153 without restraints) Performing minimization step: 1013. Total energy = 16249.9423 kcal/mol (16238.4959 without restraints) Performing minimization step: 1014. Total energy = 16239.4385 kcal/mol (16227.9940 without restraints) Performing minimization step: 1015. Total energy = 16228.9504 kcal/mol (16217.5078 without restraints) Performing minimization step: 1016. Total energy = 16218.4790 kcal/mol (16207.0383 without restraints) Performing minimization step: 1017. Total energy = 16208.0243 kcal/mol (16196.5854 without restraints) Performing minimization step: 1018. Total energy = 16197.5856 kcal/mol (16186.1488 without restraints) Performing minimization step: 1019. Total energy = 16187.1637 kcal/mol (16175.7288 without restraints) Performing minimization step: 1020. Total energy = 16176.7582 kcal/mol (16165.3249 without restraints) Performing minimization step: 1021. Total energy = 16166.3690 kcal/mol (16154.9377 without restraints) Performing minimization step: 1022. Total energy = 16155.9966 kcal/mol (16144.5671 without restraints) Performing minimization step: 1023. Total energy = 16145.6403 kcal/mol (16134.2129 without restraints) Performing minimization step: 1024. Total energy = 16135.3001 kcal/mol (16123.8745 without restraints) Performing minimization step: 1025. Total energy = 16124.9764 kcal/mol (16113.5526 without restraints) Performing minimization step: 1026. Total energy = 16114.6685 kcal/mol (16103.2466 without restraints) Performing minimization step: 1027. Total energy = 16104.3766 kcal/mol (16092.9565 without restraints) Performing minimization step: 1028. Total energy = 16094.1005 kcal/mol (16082.6820 without restraints) Performing minimization step: 1029. Total energy = 16083.8403 kcal/mol (16072.4237 without restraints) Performing minimization step: 1030. Total energy = 16073.5963 kcal/mol (16062.1817 without restraints) Performing minimization step: 1031. Total energy = 16063.3681 kcal/mol (16051.9553 without restraints) Performing minimization step: 1032. Total energy = 16053.1558 kcal/mol (16041.7449 without restraints) Performing minimization step: 1033. Total energy = 16042.9601 kcal/mol (16031.5510 without restraints) Performing minimization step: 1034. Total energy = 16032.7796 kcal/mol (16021.3723 without restraints) Performing minimization step: 1035. Total energy = 16022.6150 kcal/mol (16011.2094 without restraints) Performing minimization step: 1036. Total energy = 16012.4662 kcal/mol (16001.0627 without restraints) Performing minimization step: 1037. Total energy = 16002.3337 kcal/mol (15990.9319 without restraints) Performing minimization step: 1038. Total energy = 15992.2168 kcal/mol (15980.8168 without restraints) Performing minimization step: 1039. Total energy = 15982.1152 kcal/mol (15970.7171 without restraints) Performing minimization step: 1040. Total energy = 15972.0294 kcal/mol (15960.6330 without restraints) Performing minimization step: 1041. Total energy = 15961.9588 kcal/mol (15950.5643 without restraints) Performing minimization step: 1042. Total energy = 15951.9039 kcal/mol (15940.5112 without restraints) Performing minimization step: 1043. Total energy = 15941.8643 kcal/mol (15930.4734 without restraints) Performing minimization step: 1044. Total energy = 15931.8406 kcal/mol (15920.4515 without restraints) Performing minimization step: 1045. Total energy = 15921.8319 kcal/mol (15910.4445 without restraints) Performing minimization step: 1046. Total energy = 15911.8387 kcal/mol (15900.4531 without restraints) Performing minimization step: 1047. Total energy = 15901.8608 kcal/mol (15890.4769 without restraints) Performing minimization step: 1048. Total energy = 15891.8979 kcal/mol (15880.5157 without restraints) Performing minimization step: 1049. Total energy = 15881.9502 kcal/mol (15870.5700 without restraints) Performing minimization step: 1050. Total energy = 15872.0181 kcal/mol (15860.6397 without restraints) Performing minimization step: 1051. Total energy = 15862.1016 kcal/mol (15850.7250 without restraints) Performing minimization step: 1052. Total energy = 15852.1995 kcal/mol (15840.8247 without restraints) Performing minimization step: 1053. Total energy = 15842.3133 kcal/mol (15830.9403 without restraints) Performing minimization step: 1054. Total energy = 15832.4419 kcal/mol (15821.0706 without restraints) Performing minimization step: 1055. Total energy = 15822.5856 kcal/mol (15811.2161 without restraints) Performing minimization step: 1056. Total energy = 15812.7442 kcal/mol (15801.3763 without restraints) Performing minimization step: 1057. Total energy = 15802.9180 kcal/mol (15791.5520 without restraints) Performing minimization step: 1058. Total energy = 15793.1064 kcal/mol (15781.7422 without restraints) Performing minimization step: 1059. Total energy = 15783.3097 kcal/mol (15771.9471 without restraints) Performing minimization step: 1060. Total energy = 15773.5277 kcal/mol (15762.1668 without restraints) Performing minimization step: 1061. Total energy = 15763.7607 kcal/mol (15752.4017 without restraints) Performing minimization step: 1062. Total energy = 15754.0087 kcal/mol (15742.6514 without restraints) Performing minimization step: 1063. Total energy = 15744.2713 kcal/mol (15732.9158 without restraints) Performing minimization step: 1064. Total energy = 15734.5483 kcal/mol (15723.1944 without restraints) Performing minimization step: 1065. Total energy = 15724.8399 kcal/mol (15713.4877 without restraints) Performing minimization step: 1066. Total energy = 15715.1464 kcal/mol (15703.7962 without restraints) Performing minimization step: 1067. Total energy = 15705.4677 kcal/mol (15694.1191 without restraints) Performing minimization step: 1068. Total energy = 15695.8038 kcal/mol (15684.4569 without restraints) Performing minimization step: 1069. Total energy = 15686.1541 kcal/mol (15674.8090 without restraints) Performing minimization step: 1070. Total energy = 15676.5194 kcal/mol (15665.1760 without restraints) Performing minimization step: 1071. Total energy = 15666.8986 kcal/mol (15655.5570 without restraints) Performing minimization step: 1072. Total energy = 15657.2926 kcal/mol (15645.9527 without restraints) Performing minimization step: 1073. Total energy = 15647.7004 kcal/mol (15636.3622 without restraints) Performing minimization step: 1074. Total energy = 15638.1229 kcal/mol (15626.7863 without restraints) Performing minimization step: 1075. Total energy = 15628.5593 kcal/mol (15617.2244 without restraints) Performing minimization step: 1076. Total energy = 15619.0100 kcal/mol (15607.6768 without restraints) Performing minimization step: 1077. Total energy = 15609.4756 kcal/mol (15598.1442 without restraints) Performing minimization step: 1078. Total energy = 15599.9552 kcal/mol (15588.6255 without restraints) Performing minimization step: 1079. Total energy = 15590.4497 kcal/mol (15579.1217 without restraints) Performing minimization step: 1080. Total energy = 15580.9574 kcal/mol (15569.6312 without restraints) Performing minimization step: 1081. Total energy = 15571.4796 kcal/mol (15560.1551 without restraints) Performing minimization step: 1082. Total energy = 15562.0162 kcal/mol (15550.6935 without restraints) Performing minimization step: 1083. Total energy = 15552.5671 kcal/mol (15541.2460 without restraints) Performing minimization step: 1084. Total energy = 15543.1310 kcal/mol (15531.8115 without restraints) Performing minimization step: 1085. Total energy = 15533.7094 kcal/mol (15522.3916 without restraints) Performing minimization step: 1086. Total energy = 15524.3022 kcal/mol (15512.9861 without restraints) Performing minimization step: 1087. Total energy = 15514.9087 kcal/mol (15503.5943 without restraints) Performing minimization step: 1088. Total energy = 15505.5291 kcal/mol (15494.2164 without restraints) Performing minimization step: 1089. Total energy = 15496.1628 kcal/mol (15484.8518 without restraints) Performing minimization step: 1090. Total energy = 15486.8109 kcal/mol (15475.5015 without restraints) Performing minimization step: 1091. Total energy = 15477.4726 kcal/mol (15466.1647 without restraints) Performing minimization step: 1092. Total energy = 15468.1481 kcal/mol (15456.8420 without restraints) Performing minimization step: 1093. Total energy = 15458.8376 kcal/mol (15447.5332 without restraints) Performing minimization step: 1094. Total energy = 15449.5407 kcal/mol (15438.2380 without restraints) Performing minimization step: 1095. Total energy = 15440.2575 kcal/mol (15428.9564 without restraints) Performing minimization step: 1096. Total energy = 15430.9881 kcal/mol (15419.6887 without restraints) Performing minimization step: 1097. Total energy = 15421.7325 kcal/mol (15410.4348 without restraints) Performing minimization step: 1098. Total energy = 15412.4901 kcal/mol (15401.1939 without restraints) Performing minimization step: 1099. Total energy = 15403.2615 kcal/mol (15391.9671 without restraints) Performing minimization step: 1100. Total energy = 15394.0467 kcal/mol (15382.7539 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 15384.8451 kcal/mol (15373.5540 without restraints) Performing minimization step: 1102. Total energy = 15375.6566 kcal/mol (15364.3672 without restraints) Performing minimization step: 1103. Total energy = 15366.4820 kcal/mol (15355.1942 without restraints) Performing minimization step: 1104. Total energy = 15357.3213 kcal/mol (15346.0352 without restraints) Performing minimization step: 1105. Total energy = 15348.1734 kcal/mol (15336.8890 without restraints) Performing minimization step: 1106. Total energy = 15339.0390 kcal/mol (15327.7559 without restraints) Performing minimization step: 1107. Total energy = 15329.9179 kcal/mol (15318.6367 without restraints) Performing minimization step: 1108. Total energy = 15320.8099 kcal/mol (15309.5303 without restraints) Performing minimization step: 1109. Total energy = 15311.7156 kcal/mol (15300.4375 without restraints) Performing minimization step: 1110. Total energy = 15302.6342 kcal/mol (15291.3578 without restraints) Performing minimization step: 1111. Total energy = 15293.5658 kcal/mol (15282.2910 without restraints) Performing minimization step: 1112. Total energy = 15284.5112 kcal/mol (15273.2381 without restraints) Performing minimization step: 1113. Total energy = 15275.4694 kcal/mol (15264.1979 without restraints) Performing minimization step: 1114. Total energy = 15266.4408 kcal/mol (15255.1708 without restraints) Performing minimization step: 1115. Total energy = 15257.4250 kcal/mol (15246.1567 without restraints) Performing minimization step: 1116. Total energy = 15248.4223 kcal/mol (15237.1557 without restraints) Performing minimization step: 1117. Total energy = 15239.4327 kcal/mol (15228.1677 without restraints) Performing minimization step: 1118. Total energy = 15230.4563 kcal/mol (15219.1929 without restraints) Performing minimization step: 1119. Total energy = 15221.4926 kcal/mol (15210.2307 without restraints) Performing minimization step: 1120. Total energy = 15212.5416 kcal/mol (15201.2814 without restraints) Performing minimization step: 1121. Total energy = 15203.6040 kcal/mol (15192.3453 without restraints) Performing minimization step: 1122. Total energy = 15194.6793 kcal/mol (15183.4223 without restraints) Performing minimization step: 1123. Total energy = 15185.7669 kcal/mol (15174.5116 without restraints) Performing minimization step: 1124. Total energy = 15176.8681 kcal/mol (15165.6143 without restraints) Performing minimization step: 1125. Total energy = 15167.9813 kcal/mol (15156.7291 without restraints) Performing minimization step: 1126. Total energy = 15159.1077 kcal/mol (15147.8572 without restraints) Performing minimization step: 1127. Total energy = 15150.2474 kcal/mol (15138.9984 without restraints) Performing minimization step: 1128. Total energy = 15141.3993 kcal/mol (15130.1519 without restraints) Performing minimization step: 1129. Total energy = 15132.5635 kcal/mol (15121.3178 without restraints) Performing minimization step: 1130. Total energy = 15123.7403 kcal/mol (15112.4961 without restraints) Performing minimization step: 1131. Total energy = 15114.9305 kcal/mol (15103.6879 without restraints) Performing minimization step: 1132. Total energy = 15106.1325 kcal/mol (15094.8915 without restraints) Performing minimization step: 1133. Total energy = 15097.3471 kcal/mol (15086.1077 without restraints) Performing minimization step: 1134. Total energy = 15088.5749 kcal/mol (15077.3371 without restraints) Performing minimization step: 1135. Total energy = 15079.8149 kcal/mol (15068.5785 without restraints) Performing minimization step: 1136. Total energy = 15071.0673 kcal/mol (15059.8326 without restraints) Performing minimization step: 1137. Total energy = 15062.3324 kcal/mol (15051.0994 without restraints) Performing minimization step: 1138. Total energy = 15053.6100 kcal/mol (15042.3784 without restraints) Performing minimization step: 1139. Total energy = 15044.8999 kcal/mol (15033.6699 without restraints) Performing minimization step: 1140. Total energy = 15036.2021 kcal/mol (15024.9736 without restraints) Performing minimization step: 1141. Total energy = 15027.5168 kcal/mol (15016.2901 without restraints) Performing minimization step: 1142. Total energy = 15018.8440 kcal/mol (15007.6187 without restraints) Performing minimization step: 1143. Total energy = 15010.1835 kcal/mol (14998.9598 without restraints) Performing minimization step: 1144. Total energy = 15001.5357 kcal/mol (14990.3138 without restraints) Performing minimization step: 1145. Total energy = 14992.8996 kcal/mol (14981.6790 without restraints) Performing minimization step: 1146. Total energy = 14984.2753 kcal/mol (14973.0563 without restraints) Performing minimization step: 1147. Total energy = 14975.6638 kcal/mol (14964.4464 without restraints) Performing minimization step: 1148. Total energy = 14967.0648 kcal/mol (14955.8490 without restraints) Performing minimization step: 1149. Total energy = 14958.4778 kcal/mol (14947.2638 without restraints) Performing minimization step: 1150. Total energy = 14949.9027 kcal/mol (14938.6899 without restraints) Performing minimization step: 1151. Total energy = 14941.3398 kcal/mol (14930.1286 without restraints) Performing minimization step: 1152. Total energy = 14932.7892 kcal/mol (14921.5795 without restraints) Performing minimization step: 1153. Total energy = 14924.2501 kcal/mol (14913.0420 without restraints) Performing minimization step: 1154. Total energy = 14915.7238 kcal/mol (14904.5172 without restraints) Performing minimization step: 1155. Total energy = 14907.2089 kcal/mol (14896.0039 without restraints) Performing minimization step: 1156. Total energy = 14898.7058 kcal/mol (14887.5023 without restraints) Performing minimization step: 1157. Total energy = 14890.2147 kcal/mol (14879.0128 without restraints) Performing minimization step: 1158. Total energy = 14881.7351 kcal/mol (14870.5346 without restraints) Performing minimization step: 1159. Total energy = 14873.2677 kcal/mol (14862.0689 without restraints) Performing minimization step: 1160. Total energy = 14864.8121 kcal/mol (14853.6149 without restraints) Performing minimization step: 1161. Total energy = 14856.3685 kcal/mol (14845.1727 without restraints) Performing minimization step: 1162. Total energy = 14847.9369 kcal/mol (14836.7428 without restraints) Performing minimization step: 1163. Total energy = 14839.5169 kcal/mol (14828.3242 without restraints) Performing minimization step: 1164. Total energy = 14831.1088 kcal/mol (14819.9177 without restraints) Performing minimization step: 1165. Total energy = 14822.7122 kcal/mol (14811.5226 without restraints) Performing minimization step: 1166. Total energy = 14814.3267 kcal/mol (14803.1387 without restraints) Performing minimization step: 1167. Total energy = 14805.9539 kcal/mol (14794.7673 without restraints) Performing minimization step: 1168. Total energy = 14797.5921 kcal/mol (14786.4070 without restraints) Performing minimization step: 1169. Total energy = 14789.2426 kcal/mol (14778.0590 without restraints) Performing minimization step: 1170. Total energy = 14780.9044 kcal/mol (14769.7222 without restraints) Performing minimization step: 1171. Total energy = 14772.5777 kcal/mol (14761.3972 without restraints) Performing minimization step: 1172. Total energy = 14764.2626 kcal/mol (14753.0836 without restraints) Performing minimization step: 1173. Total energy = 14755.9595 kcal/mol (14744.7820 without restraints) Performing minimization step: 1174. Total energy = 14747.6677 kcal/mol (14736.4918 without restraints) Performing minimization step: 1175. Total energy = 14739.3869 kcal/mol (14728.2125 without restraints) Performing minimization step: 1176. Total energy = 14731.1181 kcal/mol (14719.9451 without restraints) Performing minimization step: 1177. Total energy = 14722.8608 kcal/mol (14711.6894 without restraints) Performing minimization step: 1178. Total energy = 14714.6149 kcal/mol (14703.4450 without restraints) Performing minimization step: 1179. Total energy = 14706.3805 kcal/mol (14695.2122 without restraints) Performing minimization step: 1180. Total energy = 14698.1574 kcal/mol (14686.9905 without restraints) Performing minimization step: 1181. Total energy = 14689.9459 kcal/mol (14678.7805 without restraints) Performing minimization step: 1182. Total energy = 14681.7454 kcal/mol (14670.5815 without restraints) Performing minimization step: 1183. Total energy = 14673.5568 kcal/mol (14662.3944 without restraints) Performing minimization step: 1184. Total energy = 14665.3789 kcal/mol (14654.2180 without restraints) Performing minimization step: 1185. Total energy = 14657.2123 kcal/mol (14646.0528 without restraints) Performing minimization step: 1186. Total energy = 14649.0567 kcal/mol (14637.8988 without restraints) Performing minimization step: 1187. Total energy = 14640.9125 kcal/mol (14629.7561 without restraints) Performing minimization step: 1188. Total energy = 14632.7791 kcal/mol (14621.6242 without restraints) Performing minimization step: 1189. Total energy = 14624.6577 kcal/mol (14613.5044 without restraints) Performing minimization step: 1190. Total energy = 14616.5472 kcal/mol (14605.3953 without restraints) Performing minimization step: 1191. Total energy = 14608.4477 kcal/mol (14597.2974 without restraints) Performing minimization step: 1192. Total energy = 14600.3594 kcal/mol (14589.2104 without restraints) Performing minimization step: 1193. Total energy = 14592.2822 kcal/mol (14581.1348 without restraints) Performing minimization step: 1194. Total energy = 14584.2165 kcal/mol (14573.0705 without restraints) Performing minimization step: 1195. Total energy = 14576.1621 kcal/mol (14565.0176 without restraints) Performing minimization step: 1196. Total energy = 14568.1177 kcal/mol (14556.9747 without restraints) Performing minimization step: 1197. Total energy = 14560.0850 kcal/mol (14548.9435 without restraints) Performing minimization step: 1198. Total energy = 14552.0629 kcal/mol (14540.9230 without restraints) Performing minimization step: 1199. Total energy = 14544.0522 kcal/mol (14532.9137 without restraints) Performing minimization step: 1200. Total energy = 14536.0519 kcal/mol (14524.9148 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 14528.0624 kcal/mol (14516.9268 without restraints) Performing minimization step: 1202. Total energy = 14520.0841 kcal/mol (14508.9500 without restraints) Performing minimization step: 1203. Total energy = 14512.1165 kcal/mol (14500.9838 without restraints) Performing minimization step: 1204. Total energy = 14504.1596 kcal/mol (14493.0284 without restraints) Performing minimization step: 1205. Total energy = 14496.2138 kcal/mol (14485.0841 without restraints) Performing minimization step: 1206. Total energy = 14488.2792 kcal/mol (14477.1510 without restraints) Performing minimization step: 1207. Total energy = 14480.3552 kcal/mol (14469.2286 without restraints) Performing minimization step: 1208. Total energy = 14472.4417 kcal/mol (14461.3163 without restraints) Performing minimization step: 1209. Total energy = 14464.5388 kcal/mol (14453.4150 without restraints) Performing minimization step: 1210. Total energy = 14456.6467 kcal/mol (14445.5243 without restraints) Performing minimization step: 1211. Total energy = 14448.7651 kcal/mol (14437.6442 without restraints) Performing minimization step: 1212. Total energy = 14440.8949 kcal/mol (14429.7756 without restraints) Performing minimization step: 1213. Total energy = 14433.0347 kcal/mol (14421.9168 without restraints) Performing minimization step: 1214. Total energy = 14425.1855 kcal/mol (14414.0691 without restraints) Performing minimization step: 1215. Total energy = 14417.3469 kcal/mol (14406.2319 without restraints) Performing minimization step: 1216. Total energy = 14409.5191 kcal/mol (14398.4055 without restraints) Performing minimization step: 1217. Total energy = 14401.7018 kcal/mol (14390.5897 without restraints) Performing minimization step: 1218. Total energy = 14393.8947 kcal/mol (14382.7840 without restraints) Performing minimization step: 1219. Total energy = 14386.0989 kcal/mol (14374.9897 without restraints) Performing minimization step: 1220. Total energy = 14378.3128 kcal/mol (14367.2051 without restraints) Performing minimization step: 1221. Total energy = 14370.5371 kcal/mol (14359.4307 without restraints) Performing minimization step: 1222. Total energy = 14362.7719 kcal/mol (14351.6671 without restraints) Performing minimization step: 1223. Total energy = 14355.0174 kcal/mol (14343.9140 without restraints) Performing minimization step: 1224. Total energy = 14347.2735 kcal/mol (14336.1716 without restraints) Performing minimization step: 1225. Total energy = 14339.5396 kcal/mol (14328.4390 without restraints) Performing minimization step: 1226. Total energy = 14331.8166 kcal/mol (14320.7176 without restraints) Performing minimization step: 1227. Total energy = 14324.1037 kcal/mol (14313.0060 without restraints) Performing minimization step: 1228. Total energy = 14316.4008 kcal/mol (14305.3046 without restraints) Performing minimization step: 1229. Total energy = 14308.7085 kcal/mol (14297.6137 without restraints) Performing minimization step: 1230. Total energy = 14301.0262 kcal/mol (14289.9330 without restraints) Performing minimization step: 1231. Total energy = 14293.3546 kcal/mol (14282.2628 without restraints) Performing minimization step: 1232. Total energy = 14285.6930 kcal/mol (14274.6026 without restraints) Performing minimization step: 1233. Total energy = 14278.0415 kcal/mol (14266.9525 without restraints) Performing minimization step: 1234. Total energy = 14270.4004 kcal/mol (14259.3131 without restraints) Performing minimization step: 1235. Total energy = 14262.7698 kcal/mol (14251.6836 without restraints) Performing minimization step: 1236. Total energy = 14255.1490 kcal/mol (14244.0643 without restraints) Performing minimization step: 1237. Total energy = 14247.5385 kcal/mol (14236.4552 without restraints) Performing minimization step: 1238. Total energy = 14239.9381 kcal/mol (14228.8563 without restraints) Performing minimization step: 1239. Total energy = 14232.3478 kcal/mol (14221.2674 without restraints) Performing minimization step: 1240. Total energy = 14224.7677 kcal/mol (14213.6887 without restraints) Performing minimization step: 1241. Total energy = 14217.1976 kcal/mol (14206.1200 without restraints) Performing minimization step: 1242. Total energy = 14209.6378 kcal/mol (14198.5617 without restraints) Performing minimization step: 1243. Total energy = 14202.0881 kcal/mol (14191.0134 without restraints) Performing minimization step: 1244. Total energy = 14194.5481 kcal/mol (14183.4750 without restraints) Performing minimization step: 1245. Total energy = 14187.0189 kcal/mol (14175.9469 without restraints) Performing minimization step: 1246. Total energy = 14179.4989 kcal/mol (14168.4284 without restraints) Performing minimization step: 1247. Total energy = 14171.9889 kcal/mol (14160.9199 without restraints) Performing minimization step: 1248. Total energy = 14164.4891 kcal/mol (14153.4214 without restraints) Performing minimization step: 1249. Total energy = 14156.9992 kcal/mol (14145.9330 without restraints) Performing minimization step: 1250. Total energy = 14149.5194 kcal/mol (14138.4546 without restraints) Performing minimization step: 1251. Total energy = 14142.0494 kcal/mol (14130.9860 without restraints) Performing minimization step: 1252. Total energy = 14134.5890 kcal/mol (14123.5271 without restraints) Performing minimization step: 1253. Total energy = 14127.1384 kcal/mol (14116.0779 without restraints) Performing minimization step: 1254. Total energy = 14119.6980 kcal/mol (14108.6389 without restraints) Performing minimization step: 1255. Total energy = 14112.2673 kcal/mol (14101.2095 without restraints) Performing minimization step: 1256. Total energy = 14104.8458 kcal/mol (14093.7895 without restraints) Performing minimization step: 1257. Total energy = 14097.4347 kcal/mol (14086.3798 without restraints) Performing minimization step: 1258. Total energy = 14090.0337 kcal/mol (14078.9802 without restraints) Performing minimization step: 1259. Total energy = 14082.6420 kcal/mol (14071.5900 without restraints) Performing minimization step: 1260. Total energy = 14075.2603 kcal/mol (14064.2097 without restraints) Performing minimization step: 1261. Total energy = 14067.8881 kcal/mol (14056.8389 without restraints) Performing minimization step: 1262. Total energy = 14060.5258 kcal/mol (14049.4780 without restraints) Performing minimization step: 1263. Total energy = 14053.1731 kcal/mol (14042.1267 without restraints) Performing minimization step: 1264. Total energy = 14045.8301 kcal/mol (14034.7851 without restraints) Performing minimization step: 1265. Total energy = 14038.4963 kcal/mol (14027.4526 without restraints) Performing minimization step: 1266. Total energy = 14031.1724 kcal/mol (14020.1301 without restraints) Performing minimization step: 1267. Total energy = 14023.8580 kcal/mol (14012.8172 without restraints) Performing minimization step: 1268. Total energy = 14016.5534 kcal/mol (14005.5140 without restraints) Performing minimization step: 1269. Total energy = 14009.2588 kcal/mol (13998.2208 without restraints) Performing minimization step: 1270. Total energy = 14001.9736 kcal/mol (13990.9370 without restraints) Performing minimization step: 1271. Total energy = 13994.6981 kcal/mol (13983.6629 without restraints) Performing minimization step: 1272. Total energy = 13987.4317 kcal/mol (13976.3979 without restraints) Performing minimization step: 1273. Total energy = 13980.1748 kcal/mol (13969.1424 without restraints) Performing minimization step: 1274. Total energy = 13972.9277 kcal/mol (13961.8966 without restraints) Performing minimization step: 1275. Total energy = 13965.6893 kcal/mol (13954.6597 without restraints) Performing minimization step: 1276. Total energy = 13958.4610 kcal/mol (13947.4328 without restraints) Performing minimization step: 1277. Total energy = 13951.2419 kcal/mol (13940.2150 without restraints) Performing minimization step: 1278. Total energy = 13944.0321 kcal/mol (13933.0066 without restraints) Performing minimization step: 1279. Total energy = 13936.8317 kcal/mol (13925.8077 without restraints) Performing minimization step: 1280. Total energy = 13929.6406 kcal/mol (13918.6179 without restraints) Performing minimization step: 1281. Total energy = 13922.4591 kcal/mol (13911.4379 without restraints) Performing minimization step: 1282. Total energy = 13915.2869 kcal/mol (13904.2670 without restraints) Performing minimization step: 1283. Total energy = 13908.1240 kcal/mol (13897.1055 without restraints) Performing minimization step: 1284. Total energy = 13900.9704 kcal/mol (13889.9533 without restraints) Performing minimization step: 1285. Total energy = 13893.8257 kcal/mol (13882.8097 without restraints) Performing minimization step: 1286. Total energy = 13886.6906 kcal/mol (13875.6763 without restraints) Performing minimization step: 1287. Total energy = 13879.5649 kcal/mol (13868.5517 without restraints) Performing minimization step: 1288. Total energy = 13872.4479 kcal/mol (13861.4363 without restraints) Performing minimization step: 1289. Total energy = 13865.3404 kcal/mol (13854.3301 without restraints) Performing minimization step: 1290. Total energy = 13858.2427 kcal/mol (13847.2339 without restraints) Performing minimization step: 1291. Total energy = 13851.1540 kcal/mol (13840.1465 without restraints) Performing minimization step: 1292. Total energy = 13844.0745 kcal/mol (13833.0684 without restraints) Performing minimization step: 1293. Total energy = 13837.0042 kcal/mol (13825.9996 without restraints) Performing minimization step: 1294. Total energy = 13829.9429 kcal/mol (13818.9395 without restraints) Performing minimization step: 1295. Total energy = 13822.8906 kcal/mol (13811.8886 without restraints) Performing minimization step: 1296. Total energy = 13815.8473 kcal/mol (13804.8467 without restraints) Performing minimization step: 1297. Total energy = 13808.8132 kcal/mol (13797.8140 without restraints) Performing minimization step: 1298. Total energy = 13801.7881 kcal/mol (13790.7902 without restraints) Performing minimization step: 1299. Total energy = 13794.7727 kcal/mol (13783.7762 without restraints) Performing minimization step: 1300. Total energy = 13787.7659 kcal/mol (13776.7707 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 13780.7678 kcal/mol (13769.7742 without restraints) Performing minimization step: 1302. Total energy = 13773.7793 kcal/mol (13762.7869 without restraints) Performing minimization step: 1303. Total energy = 13766.7996 kcal/mol (13755.8086 without restraints) Performing minimization step: 1304. Total energy = 13759.8292 kcal/mol (13748.8396 without restraints) Performing minimization step: 1305. Total energy = 13752.8672 kcal/mol (13741.8789 without restraints) Performing minimization step: 1306. Total energy = 13745.9141 kcal/mol (13734.9273 without restraints) Performing minimization step: 1307. Total energy = 13738.9701 kcal/mol (13727.9844 without restraints) Performing minimization step: 1308. Total energy = 13732.0346 kcal/mol (13721.0504 without restraints) Performing minimization step: 1309. Total energy = 13725.1083 kcal/mol (13714.1254 without restraints) Performing minimization step: 1310. Total energy = 13718.1909 kcal/mol (13707.2093 without restraints) Performing minimization step: 1311. Total energy = 13711.2827 kcal/mol (13700.3027 without restraints) Performing minimization step: 1312. Total energy = 13704.3829 kcal/mol (13693.4042 without restraints) Performing minimization step: 1313. Total energy = 13697.4924 kcal/mol (13686.5149 without restraints) Performing minimization step: 1314. Total energy = 13690.6103 kcal/mol (13679.6342 without restraints) Performing minimization step: 1315. Total energy = 13683.7370 kcal/mol (13672.7623 without restraints) Performing minimization step: 1316. Total energy = 13676.8725 kcal/mol (13665.8991 without restraints) Performing minimization step: 1317. Total energy = 13670.0170 kcal/mol (13659.0450 without restraints) Performing minimization step: 1318. Total energy = 13663.1700 kcal/mol (13652.1993 without restraints) Performing minimization step: 1319. Total energy = 13656.3317 kcal/mol (13645.3624 without restraints) Performing minimization step: 1320. Total energy = 13649.5025 kcal/mol (13638.5346 without restraints) Performing minimization step: 1321. Total energy = 13642.6822 kcal/mol (13631.7156 without restraints) Performing minimization step: 1322. Total energy = 13635.8701 kcal/mol (13624.9050 without restraints) Performing minimization step: 1323. Total energy = 13629.0669 kcal/mol (13618.1030 without restraints) Performing minimization step: 1324. Total energy = 13622.2719 kcal/mol (13611.3093 without restraints) Performing minimization step: 1325. Total energy = 13615.4862 kcal/mol (13604.5249 without restraints) Performing minimization step: 1326. Total energy = 13608.7088 kcal/mol (13597.7490 without restraints) Performing minimization step: 1327. Total energy = 13601.9401 kcal/mol (13590.9816 without restraints) Performing minimization step: 1328. Total energy = 13595.1799 kcal/mol (13584.2227 without restraints) Performing minimization step: 1329. Total energy = 13588.4283 kcal/mol (13577.4725 without restraints) Performing minimization step: 1330. Total energy = 13581.6854 kcal/mol (13570.7310 without restraints) Performing minimization step: 1331. Total energy = 13574.9509 kcal/mol (13563.9978 without restraints) Performing minimization step: 1332. Total energy = 13568.2251 kcal/mol (13557.2732 without restraints) Performing minimization step: 1333. Total energy = 13561.5080 kcal/mol (13550.5576 without restraints) Performing minimization step: 1334. Total energy = 13554.7995 kcal/mol (13543.8504 without restraints) Performing minimization step: 1335. Total energy = 13548.0991 kcal/mol (13537.1513 without restraints) Performing minimization step: 1336. Total energy = 13541.4073 kcal/mol (13530.4609 without restraints) Performing minimization step: 1337. Total energy = 13534.7242 kcal/mol (13523.7791 without restraints) Performing minimization step: 1338. Total energy = 13528.0495 kcal/mol (13517.1057 without restraints) Performing minimization step: 1339. Total energy = 13521.3835 kcal/mol (13510.4411 without restraints) Performing minimization step: 1340. Total energy = 13514.7254 kcal/mol (13503.7842 without restraints) Performing minimization step: 1341. Total energy = 13508.0760 kcal/mol (13497.1363 without restraints) Performing minimization step: 1342. Total energy = 13501.4344 kcal/mol (13490.4960 without restraints) Performing minimization step: 1343. Total energy = 13494.8013 kcal/mol (13483.8641 without restraints) Performing minimization step: 1344. Total energy = 13488.1768 kcal/mol (13477.2411 without restraints) Performing minimization step: 1345. Total energy = 13481.5605 kcal/mol (13470.6261 without restraints) Performing minimization step: 1346. Total energy = 13474.9530 kcal/mol (13464.0199 without restraints) Performing minimization step: 1347. Total energy = 13468.3540 kcal/mol (13457.4224 without restraints) Performing minimization step: 1348. Total energy = 13461.7634 kcal/mol (13450.8330 without restraints) Performing minimization step: 1349. Total energy = 13455.1803 kcal/mol (13444.2512 without restraints) Performing minimization step: 1350. Total energy = 13448.6058 kcal/mol (13437.6780 without restraints) Performing minimization step: 1351. Total energy = 13442.0398 kcal/mol (13431.1135 without restraints) Performing minimization step: 1352. Total energy = 13435.4824 kcal/mol (13424.5573 without restraints) Performing minimization step: 1353. Total energy = 13428.9324 kcal/mol (13418.0086 without restraints) Performing minimization step: 1354. Total energy = 13422.3914 kcal/mol (13411.4692 without restraints) Performing minimization step: 1355. Total energy = 13415.8580 kcal/mol (13404.9369 without restraints) Performing minimization step: 1356. Total energy = 13409.3325 kcal/mol (13398.4126 without restraints) Performing minimization step: 1357. Total energy = 13402.8154 kcal/mol (13391.8969 without restraints) Performing minimization step: 1358. Total energy = 13396.3066 kcal/mol (13385.3894 without restraints) Performing minimization step: 1359. Total energy = 13389.8059 kcal/mol (13378.8900 without restraints) Performing minimization step: 1360. Total energy = 13383.3131 kcal/mol (13372.3986 without restraints) Performing minimization step: 1361. Total energy = 13376.8286 kcal/mol (13365.9155 without restraints) Performing minimization step: 1362. Total energy = 13370.3524 kcal/mol (13359.4406 without restraints) Performing minimization step: 1363. Total energy = 13363.8840 kcal/mol (13352.9734 without restraints) Performing minimization step: 1364. Total energy = 13357.4242 kcal/mol (13346.5149 without restraints) Performing minimization step: 1365. Total energy = 13350.9724 kcal/mol (13340.0645 without restraints) Performing minimization step: 1366. Total energy = 13344.5284 kcal/mol (13333.6218 without restraints) Performing minimization step: 1367. Total energy = 13338.0926 kcal/mol (13327.1875 without restraints) Performing minimization step: 1368. Total energy = 13331.6647 kcal/mol (13320.7607 without restraints) Performing minimization step: 1369. Total energy = 13325.2448 kcal/mol (13314.3421 without restraints) Performing minimization step: 1370. Total energy = 13318.8330 kcal/mol (13307.9316 without restraints) Performing minimization step: 1371. Total energy = 13312.4292 kcal/mol (13301.5292 without restraints) Performing minimization step: 1372. Total energy = 13306.0333 kcal/mol (13295.1345 without restraints) Performing minimization step: 1373. Total energy = 13299.6452 kcal/mol (13288.7478 without restraints) Performing minimization step: 1374. Total energy = 13293.2654 kcal/mol (13282.3694 without restraints) Performing minimization step: 1375. Total energy = 13286.8938 kcal/mol (13275.9990 without restraints) Performing minimization step: 1376. Total energy = 13280.5303 kcal/mol (13269.6369 without restraints) Performing minimization step: 1377. Total energy = 13274.1739 kcal/mol (13263.2817 without restraints) Performing minimization step: 1378. Total energy = 13267.8250 kcal/mol (13256.9342 without restraints) Performing minimization step: 1379. Total energy = 13261.4843 kcal/mol (13250.5947 without restraints) Performing minimization step: 1380. Total energy = 13255.1516 kcal/mol (13244.2633 without restraints) Performing minimization step: 1381. Total energy = 13248.8268 kcal/mol (13237.9398 without restraints) Performing minimization step: 1382. Total energy = 13242.5096 kcal/mol (13231.6239 without restraints) Performing minimization step: 1383. Total energy = 13236.2005 kcal/mol (13225.3162 without restraints) Performing minimization step: 1384. Total energy = 13229.8996 kcal/mol (13219.0165 without restraints) Performing minimization step: 1385. Total energy = 13223.6060 kcal/mol (13212.7242 without restraints) Performing minimization step: 1386. Total energy = 13217.3204 kcal/mol (13206.4399 without restraints) Performing minimization step: 1387. Total energy = 13211.0423 kcal/mol (13200.1631 without restraints) Performing minimization step: 1388. Total energy = 13204.7719 kcal/mol (13193.8938 without restraints) Performing minimization step: 1389. Total energy = 13198.5092 kcal/mol (13187.6327 without restraints) Performing minimization step: 1390. Total energy = 13192.2546 kcal/mol (13181.3793 without restraints) Performing minimization step: 1391. Total energy = 13186.0075 kcal/mol (13175.1335 without restraints) Performing minimization step: 1392. Total energy = 13179.7685 kcal/mol (13168.8957 without restraints) Performing minimization step: 1393. Total energy = 13173.5362 kcal/mol (13162.6647 without restraints) Performing minimization step: 1394. Total energy = 13167.3121 kcal/mol (13156.4420 without restraints) Performing minimization step: 1395. Total energy = 13161.0964 kcal/mol (13150.2275 without restraints) Performing minimization step: 1396. Total energy = 13154.8878 kcal/mol (13144.0203 without restraints) Performing minimization step: 1397. Total energy = 13148.6870 kcal/mol (13137.8207 without restraints) Performing minimization step: 1398. Total energy = 13142.4935 kcal/mol (13131.6286 without restraints) Performing minimization step: 1399. Total energy = 13136.3079 kcal/mol (13125.4443 without restraints) Performing minimization step: 1400. Total energy = 13130.1297 kcal/mol (13119.2673 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 13123.9591 kcal/mol (13113.0980 without restraints) Performing minimization step: 1402. Total energy = 13117.7965 kcal/mol (13106.9368 without restraints) Performing minimization step: 1403. Total energy = 13111.6406 kcal/mol (13100.7820 without restraints) Performing minimization step: 1404. Total energy = 13105.4927 kcal/mol (13094.6355 without restraints) Performing minimization step: 1405. Total energy = 13099.3523 kcal/mol (13088.4963 without restraints) Performing minimization step: 1406. Total energy = 13093.2193 kcal/mol (13082.3647 without restraints) Performing minimization step: 1407. Total energy = 13087.0943 kcal/mol (13076.2410 without restraints) Performing minimization step: 1408. Total energy = 13080.9767 kcal/mol (13070.1246 without restraints) Performing minimization step: 1409. Total energy = 13074.8663 kcal/mol (13064.0154 without restraints) Performing minimization step: 1410. Total energy = 13068.7630 kcal/mol (13057.9135 without restraints) Performing minimization step: 1411. Total energy = 13062.6677 kcal/mol (13051.8194 without restraints) Performing minimization step: 1412. Total energy = 13056.5793 kcal/mol (13045.7322 without restraints) Performing minimization step: 1413. Total energy = 13050.4985 kcal/mol (13039.6529 without restraints) Performing minimization step: 1414. Total energy = 13044.4262 kcal/mol (13033.5817 without restraints) Performing minimization step: 1415. Total energy = 13038.3602 kcal/mol (13027.5170 without restraints) Performing minimization step: 1416. Total energy = 13032.3014 kcal/mol (13021.4596 without restraints) Performing minimization step: 1417. Total energy = 13026.2507 kcal/mol (13015.4101 without restraints) Performing minimization step: 1418. Total energy = 13020.2071 kcal/mol (13009.3677 without restraints) Performing minimization step: 1419. Total energy = 13014.1705 kcal/mol (13003.3324 without restraints) Performing minimization step: 1420. Total energy = 13008.1416 kcal/mol (12997.3048 without restraints) Performing minimization step: 1421. Total energy = 13002.1198 kcal/mol (12991.2842 without restraints) Performing minimization step: 1422. Total energy = 12996.1055 kcal/mol (12985.2713 without restraints) Performing minimization step: 1423. Total energy = 12990.0985 kcal/mol (12979.2657 without restraints) Performing minimization step: 1424. Total energy = 12984.0995 kcal/mol (12973.2679 without restraints) Performing minimization step: 1425. Total energy = 12978.1075 kcal/mol (12967.2772 without restraints) Performing minimization step: 1426. Total energy = 12972.1225 kcal/mol (12961.2933 without restraints) Performing minimization step: 1427. Total energy = 12966.1445 kcal/mol (12955.3165 without restraints) Performing minimization step: 1428. Total energy = 12960.1741 kcal/mol (12949.3477 without restraints) Performing minimization step: 1429. Total energy = 12954.2108 kcal/mol (12943.3855 without restraints) Performing minimization step: 1430. Total energy = 12948.2547 kcal/mol (12937.4306 without restraints) Performing minimization step: 1431. Total energy = 12942.3057 kcal/mol (12931.4829 without restraints) Performing minimization step: 1432. Total energy = 12936.3640 kcal/mol (12925.5425 without restraints) Performing minimization step: 1433. Total energy = 12930.4292 kcal/mol (12919.6089 without restraints) Performing minimization step: 1434. Total energy = 12924.5017 kcal/mol (12913.6828 without restraints) Performing minimization step: 1435. Total energy = 12918.5817 kcal/mol (12907.7639 without restraints) Performing minimization step: 1436. Total energy = 12912.6685 kcal/mol (12901.8521 without restraints) Performing minimization step: 1437. Total energy = 12906.7626 kcal/mol (12895.9473 without restraints) Performing minimization step: 1438. Total energy = 12900.8639 kcal/mol (12890.0499 without restraints) Performing minimization step: 1439. Total energy = 12894.9720 kcal/mol (12884.1592 without restraints) Performing minimization step: 1440. Total energy = 12889.0870 kcal/mol (12878.2755 without restraints) Performing minimization step: 1441. Total energy = 12883.2095 kcal/mol (12872.3994 without restraints) Performing minimization step: 1442. Total energy = 12877.3383 kcal/mol (12866.5294 without restraints) Performing minimization step: 1443. Total energy = 12871.4746 kcal/mol (12860.6670 without restraints) Performing minimization step: 1444. Total energy = 12865.6183 kcal/mol (12854.8119 without restraints) Performing minimization step: 1445. Total energy = 12859.7689 kcal/mol (12848.9638 without restraints) Performing minimization step: 1446. Total energy = 12853.9272 kcal/mol (12843.1233 without restraints) Performing minimization step: 1447. Total energy = 12848.0923 kcal/mol (12837.2897 without restraints) Performing minimization step: 1448. Total energy = 12842.2639 kcal/mol (12831.4624 without restraints) Performing minimization step: 1449. Total energy = 12836.4428 kcal/mol (12825.6427 without restraints) Performing minimization step: 1450. Total energy = 12830.6290 kcal/mol (12819.8301 without restraints) Performing minimization step: 1451. Total energy = 12824.8216 kcal/mol (12814.0240 without restraints) Performing minimization step: 1452. Total energy = 12819.0212 kcal/mol (12808.2248 without restraints) Performing minimization step: 1453. Total energy = 12813.2278 kcal/mol (12802.4327 without restraints) Performing minimization step: 1454. Total energy = 12807.4415 kcal/mol (12796.6476 without restraints) Performing minimization step: 1455. Total energy = 12801.6618 kcal/mol (12790.8692 without restraints) Performing minimization step: 1456. Total energy = 12795.8892 kcal/mol (12785.0978 without restraints) Performing minimization step: 1457. Total energy = 12790.1231 kcal/mol (12779.3330 without restraints) Performing minimization step: 1458. Total energy = 12784.3642 kcal/mol (12773.5753 without restraints) Performing minimization step: 1459. Total energy = 12778.6122 kcal/mol (12767.8245 without restraints) Performing minimization step: 1460. Total energy = 12772.8666 kcal/mol (12762.0802 without restraints) Performing minimization step: 1461. Total energy = 12767.1285 kcal/mol (12756.3435 without restraints) Performing minimization step: 1462. Total energy = 12761.3975 kcal/mol (12750.6138 without restraints) Performing minimization step: 1463. Total energy = 12755.6733 kcal/mol (12744.8908 without restraints) Performing minimization step: 1464. Total energy = 12749.9555 kcal/mol (12739.1741 without restraints) Performing minimization step: 1465. Total energy = 12744.2445 kcal/mol (12733.4644 without restraints) Performing minimization step: 1466. Total energy = 12738.5402 kcal/mol (12727.7614 without restraints) Performing minimization step: 1467. Total energy = 12732.8424 kcal/mol (12722.0647 without restraints) Performing minimization step: 1468. Total energy = 12727.1517 kcal/mol (12716.3752 without restraints) Performing minimization step: 1469. Total energy = 12721.4677 kcal/mol (12710.6925 without restraints) Performing minimization step: 1470. Total energy = 12715.7910 kcal/mol (12705.0172 without restraints) Performing minimization step: 1471. Total energy = 12710.1206 kcal/mol (12699.3479 without restraints) Performing minimization step: 1472. Total energy = 12704.4569 kcal/mol (12693.6854 without restraints) Performing minimization step: 1473. Total energy = 12698.8003 kcal/mol (12688.0301 without restraints) Performing minimization step: 1474. Total energy = 12693.1505 kcal/mol (12682.3815 without restraints) Performing minimization step: 1475. Total energy = 12687.5071 kcal/mol (12676.7393 without restraints) Performing minimization step: 1476. Total energy = 12681.8703 kcal/mol (12671.1039 without restraints) Performing minimization step: 1477. Total energy = 12676.2406 kcal/mol (12665.4752 without restraints) Performing minimization step: 1478. Total energy = 12670.6169 kcal/mol (12659.8528 without restraints) Performing minimization step: 1479. Total energy = 12664.9998 kcal/mol (12654.2369 without restraints) Performing minimization step: 1480. Total energy = 12659.3898 kcal/mol (12648.6282 without restraints) Performing minimization step: 1481. Total energy = 12653.7862 kcal/mol (12643.0259 without restraints) Performing minimization step: 1482. Total energy = 12648.1892 kcal/mol (12637.4300 without restraints) Performing minimization step: 1483. Total energy = 12642.5987 kcal/mol (12631.8407 without restraints) Performing minimization step: 1484. Total energy = 12637.0151 kcal/mol (12626.2584 without restraints) Performing minimization step: 1485. Total energy = 12631.4378 kcal/mol (12620.6823 without restraints) Performing minimization step: 1486. Total energy = 12625.8670 kcal/mol (12615.1127 without restraints) Performing minimization step: 1487. Total energy = 12620.3028 kcal/mol (12609.5498 without restraints) Performing minimization step: 1488. Total energy = 12614.7451 kcal/mol (12603.9932 without restraints) Performing minimization step: 1489. Total energy = 12609.1939 kcal/mol (12598.4433 without restraints) Performing minimization step: 1490. Total energy = 12603.6498 kcal/mol (12592.9004 without restraints) Performing minimization step: 1491. Total energy = 12598.1118 kcal/mol (12587.3639 without restraints) Performing minimization step: 1492. Total energy = 12592.5804 kcal/mol (12581.8335 without restraints) Performing minimization step: 1493. Total energy = 12587.0553 kcal/mol (12576.3096 without restraints) Performing minimization step: 1494. Total energy = 12581.5367 kcal/mol (12570.7923 without restraints) Performing minimization step: 1495. Total energy = 12576.0247 kcal/mol (12565.2817 without restraints) Performing minimization step: 1496. Total energy = 12570.5192 kcal/mol (12559.7771 without restraints) Performing minimization step: 1497. Total energy = 12565.0200 kcal/mol (12554.2792 without restraints) Performing minimization step: 1498. Total energy = 12559.5271 kcal/mol (12548.7875 without restraints) Performing minimization step: 1499. Total energy = 12554.0403 kcal/mol (12543.3018 without restraints) Performing minimization step: 1500. Total energy = 12548.5606 kcal/mol (12537.8235 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 12543.0874 kcal/mol (12532.3515 without restraints) Performing minimization step: 1502. Total energy = 12537.6205 kcal/mol (12526.8858 without restraints) Performing minimization step: 1503. Total energy = 12532.1598 kcal/mol (12521.4263 without restraints) Performing minimization step: 1504. Total energy = 12526.7053 kcal/mol (12515.9730 without restraints) Performing minimization step: 1505. Total energy = 12521.2576 kcal/mol (12510.5265 without restraints) Performing minimization step: 1506. Total energy = 12515.8157 kcal/mol (12505.0857 without restraints) Performing minimization step: 1507. Total energy = 12510.3799 kcal/mol (12499.6512 without restraints) Performing minimization step: 1508. Total energy = 12504.9508 kcal/mol (12494.2233 without restraints) Performing minimization step: 1509. Total energy = 12499.5280 kcal/mol (12488.8017 without restraints) Performing minimization step: 1510. Total energy = 12494.1116 kcal/mol (12483.3866 without restraints) Performing minimization step: 1511. Total energy = 12488.7015 kcal/mol (12477.9777 without restraints) Performing minimization step: 1512. Total energy = 12483.2977 kcal/mol (12472.5751 without restraints) Performing minimization step: 1513. Total energy = 12477.9002 kcal/mol (12467.1789 without restraints) Performing minimization step: 1514. Total energy = 12472.5091 kcal/mol (12461.7890 without restraints) Performing minimization step: 1515. Total energy = 12467.1240 kcal/mol (12456.4049 without restraints) Performing minimization step: 1516. Total energy = 12461.7451 kcal/mol (12451.0273 without restraints) Performing minimization step: 1517. Total energy = 12456.3722 kcal/mol (12445.6556 without restraints) Performing minimization step: 1518. Total energy = 12451.0058 kcal/mol (12440.2904 without restraints) Performing minimization step: 1519. Total energy = 12445.6457 kcal/mol (12434.9316 without restraints) Performing minimization step: 1520. Total energy = 12440.2920 kcal/mol (12429.5789 without restraints) Performing minimization step: 1521. Total energy = 12434.9437 kcal/mol (12424.2319 without restraints) Performing minimization step: 1522. Total energy = 12429.6021 kcal/mol (12418.8915 without restraints) Performing minimization step: 1523. Total energy = 12424.2668 kcal/mol (12413.5574 without restraints) Performing minimization step: 1524. Total energy = 12418.9376 kcal/mol (12408.2295 without restraints) Performing minimization step: 1525. Total energy = 12413.6146 kcal/mol (12402.9077 without restraints) Performing minimization step: 1526. Total energy = 12408.2974 kcal/mol (12397.5916 without restraints) Performing minimization step: 1527. Total energy = 12402.9866 kcal/mol (12392.2820 without restraints) Performing minimization step: 1528. Total energy = 12397.6816 kcal/mol (12386.9782 without restraints) Performing minimization step: 1529. Total energy = 12392.3831 kcal/mol (12381.6809 without restraints) Performing minimization step: 1530. Total energy = 12387.0908 kcal/mol (12376.3898 without restraints) Performing minimization step: 1531. Total energy = 12381.8041 kcal/mol (12371.1041 without restraints) Performing minimization step: 1532. Total energy = 12376.5233 kcal/mol (12365.8247 without restraints) Performing minimization step: 1533. Total energy = 12371.2490 kcal/mol (12360.5515 without restraints) Performing minimization step: 1534. Total energy = 12365.9804 kcal/mol (12355.2842 without restraints) Performing minimization step: 1535. Total energy = 12360.7179 kcal/mol (12350.0228 without restraints) Performing minimization step: 1536. Total energy = 12355.4617 kcal/mol (12344.7677 without restraints) Performing minimization step: 1537. Total energy = 12350.2110 kcal/mol (12339.5183 without restraints) Performing minimization step: 1538. Total energy = 12344.9667 kcal/mol (12334.2753 without restraints) Performing minimization step: 1539. Total energy = 12339.7281 kcal/mol (12329.0379 without restraints) Performing minimization step: 1540. Total energy = 12334.4959 kcal/mol (12323.8068 without restraints) Performing minimization step: 1541. Total energy = 12329.2701 kcal/mol (12318.5822 without restraints) Performing minimization step: 1542. Total energy = 12324.0497 kcal/mol (12313.3631 without restraints) Performing minimization step: 1543. Total energy = 12318.8353 kcal/mol (12308.1496 without restraints) Performing minimization step: 1544. Total energy = 12313.6268 kcal/mol (12302.9424 without restraints) Performing minimization step: 1545. Total energy = 12308.4240 kcal/mol (12297.7409 without restraints) Performing minimization step: 1546. Total energy = 12303.2279 kcal/mol (12292.5457 without restraints) Performing minimization step: 1547. Total energy = 12298.0370 kcal/mol (12287.3563 without restraints) Performing minimization step: 1548. Total energy = 12292.8526 kcal/mol (12282.1730 without restraints) Performing minimization step: 1549. Total energy = 12287.6740 kcal/mol (12276.9956 without restraints) Performing minimization step: 1550. Total energy = 12282.5012 kcal/mol (12271.8240 without restraints) Performing minimization step: 1551. Total energy = 12277.3341 kcal/mol (12266.6580 without restraints) Performing minimization step: 1552. Total energy = 12272.1728 kcal/mol (12261.4980 without restraints) Performing minimization step: 1553. Total energy = 12267.0173 kcal/mol (12256.3435 without restraints) Performing minimization step: 1554. Total energy = 12261.8677 kcal/mol (12251.1952 without restraints) Performing minimization step: 1555. Total energy = 12256.7242 kcal/mol (12246.0528 without restraints) Performing minimization step: 1556. Total energy = 12251.5864 kcal/mol (12240.9162 without restraints) Performing minimization step: 1557. Total energy = 12246.4546 kcal/mol (12235.7856 without restraints) Performing minimization step: 1558. Total energy = 12241.3287 kcal/mol (12230.6609 without restraints) Performing minimization step: 1559. Total energy = 12236.2089 kcal/mol (12225.5423 without restraints) Performing minimization step: 1560. Total energy = 12231.0942 kcal/mol (12220.4287 without restraints) Performing minimization step: 1561. Total energy = 12225.9860 kcal/mol (12215.3216 without restraints) Performing minimization step: 1562. Total energy = 12220.8831 kcal/mol (12210.2200 without restraints) Performing minimization step: 1563. Total energy = 12215.7859 kcal/mol (12205.1239 without restraints) Performing minimization step: 1564. Total energy = 12210.6943 kcal/mol (12200.0335 without restraints) Performing minimization step: 1565. Total energy = 12205.6083 kcal/mol (12194.9486 without restraints) Performing minimization step: 1566. Total energy = 12200.5286 kcal/mol (12189.8702 without restraints) Performing minimization step: 1567. Total energy = 12195.4540 kcal/mol (12184.7967 without restraints) Performing minimization step: 1568. Total energy = 12190.3854 kcal/mol (12179.7293 without restraints) Performing minimization step: 1569. Total energy = 12185.3224 kcal/mol (12174.6675 without restraints) Performing minimization step: 1570. Total energy = 12180.2653 kcal/mol (12169.6118 without restraints) Performing minimization step: 1571. Total energy = 12175.2139 kcal/mol (12164.5614 without restraints) Performing minimization step: 1572. Total energy = 12170.1684 kcal/mol (12159.5171 without restraints) Performing minimization step: 1573. Total energy = 12165.1282 kcal/mol (12154.4779 without restraints) Performing minimization step: 1574. Total energy = 12160.0938 kcal/mol (12149.4446 without restraints) Performing minimization step: 1575. Total energy = 12155.0648 kcal/mol (12144.4168 without restraints) Performing minimization step: 1576. Total energy = 12150.0412 kcal/mol (12139.3944 without restraints) Performing minimization step: 1577. Total energy = 12145.0237 kcal/mol (12134.3780 without restraints) Performing minimization step: 1578. Total energy = 12140.0115 kcal/mol (12129.3671 without restraints) Performing minimization step: 1579. Total energy = 12135.0053 kcal/mol (12124.3621 without restraints) Performing minimization step: 1580. Total energy = 12130.0046 kcal/mol (12119.3626 without restraints) Performing minimization step: 1581. Total energy = 12125.0095 kcal/mol (12114.3684 without restraints) Performing minimization step: 1582. Total energy = 12120.0199 kcal/mol (12109.3801 without restraints) Performing minimization step: 1583. Total energy = 12115.0356 kcal/mol (12104.3970 without restraints) Performing minimization step: 1584. Total energy = 12110.0567 kcal/mol (12099.4192 without restraints) Performing minimization step: 1585. Total energy = 12105.0834 kcal/mol (12094.4470 without restraints) Performing minimization step: 1586. Total energy = 12100.1157 kcal/mol (12089.4805 without restraints) Performing minimization step: 1587. Total energy = 12095.1536 kcal/mol (12084.5196 without restraints) Performing minimization step: 1588. Total energy = 12090.1971 kcal/mol (12079.5643 without restraints) Performing minimization step: 1589. Total energy = 12085.2461 kcal/mol (12074.6143 without restraints) Performing minimization step: 1590. Total energy = 12080.3007 kcal/mol (12069.6703 without restraints) Performing minimization step: 1591. Total energy = 12075.3604 kcal/mol (12064.7309 without restraints) Performing minimization step: 1592. Total energy = 12070.4257 kcal/mol (12059.7974 without restraints) Performing minimization step: 1593. Total energy = 12065.4967 kcal/mol (12054.8696 without restraints) Performing minimization step: 1594. Total energy = 12060.5731 kcal/mol (12049.9471 without restraints) Performing minimization step: 1595. Total energy = 12055.6548 kcal/mol (12045.0300 without restraints) Performing minimization step: 1596. Total energy = 12050.7416 kcal/mol (12040.1178 without restraints) Performing minimization step: 1597. Total energy = 12045.8338 kcal/mol (12035.2112 without restraints) Performing minimization step: 1598. Total energy = 12040.9321 kcal/mol (12030.3106 without restraints) Performing minimization step: 1599. Total energy = 12036.0354 kcal/mol (12025.4151 without restraints) Performing minimization step: 1600. Total energy = 12031.1440 kcal/mol (12020.5250 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 12026.2577 kcal/mol (12015.6396 without restraints) Performing minimization step: 1602. Total energy = 12021.3770 kcal/mol (12010.7602 without restraints) Performing minimization step: 1603. Total energy = 12016.5020 kcal/mol (12005.8863 without restraints) Performing minimization step: 1604. Total energy = 12011.6327 kcal/mol (12001.0183 without restraints) Performing minimization step: 1605. Total energy = 12006.7686 kcal/mol (11996.1552 without restraints) Performing minimization step: 1606. Total energy = 12001.9090 kcal/mol (11991.2968 without restraints) Performing minimization step: 1607. Total energy = 11997.0555 kcal/mol (11986.4443 without restraints) Performing minimization step: 1608. Total energy = 11992.2071 kcal/mol (11981.5972 without restraints) Performing minimization step: 1609. Total energy = 11987.3643 kcal/mol (11976.7554 without restraints) Performing minimization step: 1610. Total energy = 11982.5264 kcal/mol (11971.9187 without restraints) Performing minimization step: 1611. Total energy = 11977.6931 kcal/mol (11967.0865 without restraints) Performing minimization step: 1612. Total energy = 11972.8659 kcal/mol (11962.2605 without restraints) Performing minimization step: 1613. Total energy = 11968.0441 kcal/mol (11957.4398 without restraints) Performing minimization step: 1614. Total energy = 11963.2276 kcal/mol (11952.6246 without restraints) Performing minimization step: 1615. Total energy = 11958.4163 kcal/mol (11947.8142 without restraints) Performing minimization step: 1616. Total energy = 11953.6099 kcal/mol (11943.0090 without restraints) Performing minimization step: 1617. Total energy = 11948.8091 kcal/mol (11938.2095 without restraints) Performing minimization step: 1618. Total energy = 11944.0140 kcal/mol (11933.4155 without restraints) Performing minimization step: 1619. Total energy = 11939.2236 kcal/mol (11928.6261 without restraints) Performing minimization step: 1620. Total energy = 11934.4375 kcal/mol (11923.8411 without restraints) Performing minimization step: 1621. Total energy = 11929.6575 kcal/mol (11919.0622 without restraints) Performing minimization step: 1622. Total energy = 11924.8827 kcal/mol (11914.2886 without restraints) Performing minimization step: 1623. Total energy = 11920.1130 kcal/mol (11909.5200 without restraints) Performing minimization step: 1624. Total energy = 11915.3482 kcal/mol (11904.7564 without restraints) Performing minimization step: 1625. Total energy = 11910.5890 kcal/mol (11899.9984 without restraints) Performing minimization step: 1626. Total energy = 11905.8347 kcal/mol (11895.2451 without restraints) Performing minimization step: 1627. Total energy = 11901.0853 kcal/mol (11890.4968 without restraints) Performing minimization step: 1628. Total energy = 11896.3413 kcal/mol (11885.7539 without restraints) Performing minimization step: 1629. Total energy = 11891.6022 kcal/mol (11881.0162 without restraints) Performing minimization step: 1630. Total energy = 11886.8687 kcal/mol (11876.2836 without restraints) Performing minimization step: 1631. Total energy = 11882.1404 kcal/mol (11871.5565 without restraints) Performing minimization step: 1632. Total energy = 11877.4171 kcal/mol (11866.8344 without restraints) Performing minimization step: 1633. Total energy = 11872.6990 kcal/mol (11862.1173 without restraints) Performing minimization step: 1634. Total energy = 11867.9865 kcal/mol (11857.4060 without restraints) Performing minimization step: 1635. Total energy = 11863.2784 kcal/mol (11852.6989 without restraints) Performing minimization step: 1636. Total energy = 11858.5758 kcal/mol (11847.9975 without restraints) Performing minimization step: 1637. Total energy = 11853.8779 kcal/mol (11843.3007 without restraints) Performing minimization step: 1638. Total energy = 11849.1848 kcal/mol (11838.6086 without restraints) Performing minimization step: 1639. Total energy = 11844.4966 kcal/mol (11833.9215 without restraints) Performing minimization step: 1640. Total energy = 11839.8132 kcal/mol (11829.2393 without restraints) Performing minimization step: 1641. Total energy = 11835.1355 kcal/mol (11824.5626 without restraints) Performing minimization step: 1642. Total energy = 11830.4626 kcal/mol (11819.8909 without restraints) Performing minimization step: 1643. Total energy = 11825.7956 kcal/mol (11815.2251 without restraints) Performing minimization step: 1644. Total energy = 11821.1323 kcal/mol (11810.5629 without restraints) Performing minimization step: 1645. Total energy = 11816.4745 kcal/mol (11805.9064 without restraints) Performing minimization step: 1646. Total energy = 11811.8215 kcal/mol (11801.2544 without restraints) Performing minimization step: 1647. Total energy = 11807.1734 kcal/mol (11796.6073 without restraints) Performing minimization step: 1648. Total energy = 11802.5299 kcal/mol (11791.9650 without restraints) Performing minimization step: 1649. Total energy = 11797.8920 kcal/mol (11787.3282 without restraints) Performing minimization step: 1650. Total energy = 11793.2591 kcal/mol (11782.6964 without restraints) Performing minimization step: 1651. Total energy = 11788.6311 kcal/mol (11778.0695 without restraints) Performing minimization step: 1652. Total energy = 11784.0079 kcal/mol (11773.4473 without restraints) Performing minimization step: 1653. Total energy = 11779.3899 kcal/mol (11768.8305 without restraints) Performing minimization step: 1654. Total energy = 11774.7765 kcal/mol (11764.2182 without restraints) Performing minimization step: 1655. Total energy = 11770.1681 kcal/mol (11759.6110 without restraints) Performing minimization step: 1656. Total energy = 11765.5640 kcal/mol (11755.0079 without restraints) Performing minimization step: 1657. Total energy = 11760.9657 kcal/mol (11750.4107 without restraints) Performing minimization step: 1658. Total energy = 11756.3716 kcal/mol (11745.8176 without restraints) Performing minimization step: 1659. Total energy = 11751.7828 kcal/mol (11741.2301 without restraints) Performing minimization step: 1660. Total energy = 11747.1985 kcal/mol (11736.6468 without restraints) Performing minimization step: 1661. Total energy = 11742.6194 kcal/mol (11732.0688 without restraints) Performing minimization step: 1662. Total energy = 11738.0446 kcal/mol (11727.4950 without restraints) Performing minimization step: 1663. Total energy = 11733.4747 kcal/mol (11722.9264 without restraints) Performing minimization step: 1664. Total energy = 11728.9101 kcal/mol (11718.3628 without restraints) Performing minimization step: 1665. Total energy = 11724.3500 kcal/mol (11713.8038 without restraints) Performing minimization step: 1666. Total energy = 11719.7948 kcal/mol (11709.2499 without restraints) Performing minimization step: 1667. Total energy = 11715.2445 kcal/mol (11704.7007 without restraints) Performing minimization step: 1668. Total energy = 11710.6992 kcal/mol (11700.1563 without restraints) Performing minimization step: 1669. Total energy = 11706.1583 kcal/mol (11695.6165 without restraints) Performing minimization step: 1670. Total energy = 11701.6221 kcal/mol (11691.0814 without restraints) Performing minimization step: 1671. Total energy = 11697.0910 kcal/mol (11686.5513 without restraints) Performing minimization step: 1672. Total energy = 11692.5647 kcal/mol (11682.0262 without restraints) Performing minimization step: 1673. Total energy = 11688.0427 kcal/mol (11677.5054 without restraints) Performing minimization step: 1674. Total energy = 11683.5260 kcal/mol (11672.9896 without restraints) Performing minimization step: 1675. Total energy = 11679.0135 kcal/mol (11668.4783 without restraints) Performing minimization step: 1676. Total energy = 11674.5053 kcal/mol (11663.9713 without restraints) Performing minimization step: 1677. Total energy = 11670.0026 kcal/mol (11659.4697 without restraints) Performing minimization step: 1678. Total energy = 11665.5042 kcal/mol (11654.9723 without restraints) Performing minimization step: 1679. Total energy = 11661.0106 kcal/mol (11650.4798 without restraints) Performing minimization step: 1680. Total energy = 11656.5218 kcal/mol (11645.9922 without restraints) Performing minimization step: 1681. Total energy = 11652.0382 kcal/mol (11641.5095 without restraints) Performing minimization step: 1682. Total energy = 11647.5589 kcal/mol (11637.0314 without restraints) Performing minimization step: 1683. Total energy = 11643.0842 kcal/mol (11632.5577 without restraints) Performing minimization step: 1684. Total energy = 11638.6135 kcal/mol (11628.0881 without restraints) Performing minimization step: 1685. Total energy = 11634.1478 kcal/mol (11623.6235 without restraints) Performing minimization step: 1686. Total energy = 11629.6871 kcal/mol (11619.1639 without restraints) Performing minimization step: 1687. Total energy = 11625.2312 kcal/mol (11614.7091 without restraints) Performing minimization step: 1688. Total energy = 11620.7801 kcal/mol (11610.2591 without restraints) Performing minimization step: 1689. Total energy = 11616.3330 kcal/mol (11605.8130 without restraints) Performing minimization step: 1690. Total energy = 11611.8905 kcal/mol (11601.3715 without restraints) Performing minimization step: 1691. Total energy = 11607.4526 kcal/mol (11596.9347 without restraints) Performing minimization step: 1692. Total energy = 11603.0192 kcal/mol (11592.5024 without restraints) Performing minimization step: 1693. Total energy = 11598.5906 kcal/mol (11588.0749 without restraints) Performing minimization step: 1694. Total energy = 11594.1662 kcal/mol (11583.6518 without restraints) Performing minimization step: 1695. Total energy = 11589.7463 kcal/mol (11579.2328 without restraints) Performing minimization step: 1696. Total energy = 11585.3313 kcal/mol (11574.8188 without restraints) Performing minimization step: 1697. Total energy = 11580.9204 kcal/mol (11570.4091 without restraints) Performing minimization step: 1698. Total energy = 11576.5144 kcal/mol (11566.0042 without restraints) Performing minimization step: 1699. Total energy = 11572.1128 kcal/mol (11561.6036 without restraints) Performing minimization step: 1700. Total energy = 11567.7160 kcal/mol (11557.2079 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 11563.3231 kcal/mol (11552.8161 without restraints) Performing minimization step: 1702. Total energy = 11558.9356 kcal/mol (11548.4297 without restraints) Performing minimization step: 1703. Total energy = 11554.5521 kcal/mol (11544.0472 without restraints) Performing minimization step: 1704. Total energy = 11550.1730 kcal/mol (11539.6692 without restraints) Performing minimization step: 1705. Total energy = 11545.7985 kcal/mol (11535.2958 without restraints) Performing minimization step: 1706. Total energy = 11541.4290 kcal/mol (11530.9273 without restraints) Performing minimization step: 1707. Total energy = 11537.0634 kcal/mol (11526.5628 without restraints) Performing minimization step: 1708. Total energy = 11532.7023 kcal/mol (11522.2028 without restraints) Performing minimization step: 1709. Total energy = 11528.3459 kcal/mol (11517.8475 without restraints) Performing minimization step: 1710. Total energy = 11523.9938 kcal/mol (11513.4966 without restraints) Performing minimization step: 1711. Total energy = 11519.6464 kcal/mol (11509.1501 without restraints) Performing minimization step: 1712. Total energy = 11515.3030 kcal/mol (11504.8078 without restraints) Performing minimization step: 1713. Total energy = 11510.9638 kcal/mol (11500.4697 without restraints) Performing minimization step: 1714. Total energy = 11506.6291 kcal/mol (11496.1360 without restraints) Performing minimization step: 1715. Total energy = 11502.2991 kcal/mol (11491.8070 without restraints) Performing minimization step: 1716. Total energy = 11497.9739 kcal/mol (11487.4830 without restraints) Performing minimization step: 1717. Total energy = 11493.6534 kcal/mol (11483.1635 without restraints) Performing minimization step: 1718. Total energy = 11489.3365 kcal/mol (11478.8478 without restraints) Performing minimization step: 1719. Total energy = 11485.0238 kcal/mol (11474.5361 without restraints) Performing minimization step: 1720. Total energy = 11480.7156 kcal/mol (11470.2289 without restraints) Performing minimization step: 1721. Total energy = 11476.4114 kcal/mol (11465.9258 without restraints) Performing minimization step: 1722. Total energy = 11472.1119 kcal/mol (11461.6273 without restraints) Performing minimization step: 1723. Total energy = 11467.8169 kcal/mol (11457.3334 without restraints) Performing minimization step: 1724. Total energy = 11463.5262 kcal/mol (11453.0438 without restraints) Performing minimization step: 1725. Total energy = 11459.2401 kcal/mol (11448.7588 without restraints) Performing minimization step: 1726. Total energy = 11454.9580 kcal/mol (11444.4776 without restraints) Performing minimization step: 1727. Total energy = 11450.6800 kcal/mol (11440.2007 without restraints) Performing minimization step: 1728. Total energy = 11446.4061 kcal/mol (11435.9279 without restraints) Performing minimization step: 1729. Total energy = 11442.1369 kcal/mol (11431.6599 without restraints) Performing minimization step: 1730. Total energy = 11437.8722 kcal/mol (11427.3961 without restraints) Performing minimization step: 1731. Total energy = 11433.6115 kcal/mol (11423.1364 without restraints) Performing minimization step: 1732. Total energy = 11429.3550 kcal/mol (11418.8810 without restraints) Performing minimization step: 1733. Total energy = 11425.1029 kcal/mol (11414.6299 without restraints) Performing minimization step: 1734. Total energy = 11420.8547 kcal/mol (11410.3828 without restraints) Performing minimization step: 1735. Total energy = 11416.6109 kcal/mol (11406.1401 without restraints) Performing minimization step: 1736. Total energy = 11412.3712 kcal/mol (11401.9014 without restraints) Performing minimization step: 1737. Total energy = 11408.1358 kcal/mol (11397.6669 without restraints) Performing minimization step: 1738. Total energy = 11403.9046 kcal/mol (11393.4369 without restraints) Performing minimization step: 1739. Total energy = 11399.6777 kcal/mol (11389.2111 without restraints) Performing minimization step: 1740. Total energy = 11395.4551 kcal/mol (11384.9895 without restraints) Performing minimization step: 1741. Total energy = 11391.2364 kcal/mol (11380.7719 without restraints) Performing minimization step: 1742. Total energy = 11387.0226 kcal/mol (11376.5591 without restraints) Performing minimization step: 1743. Total energy = 11382.8127 kcal/mol (11372.3503 without restraints) Performing minimization step: 1744. Total energy = 11378.6077 kcal/mol (11368.1463 without restraints) Performing minimization step: 1745. Total energy = 11374.4060 kcal/mol (11363.9457 without restraints) Performing minimization step: 1746. Total energy = 11370.2083 kcal/mol (11359.7490 without restraints) Performing minimization step: 1747. Total energy = 11366.0144 kcal/mol (11355.5560 without restraints) Performing minimization step: 1748. Total energy = 11361.8249 kcal/mol (11351.3676 without restraints) Performing minimization step: 1749. Total energy = 11357.6398 kcal/mol (11347.1836 without restraints) Performing minimization step: 1750. Total energy = 11353.4592 kcal/mol (11343.0042 without restraints) Performing minimization step: 1751. Total energy = 11349.2824 kcal/mol (11338.8284 without restraints) Performing minimization step: 1752. Total energy = 11345.1096 kcal/mol (11334.6565 without restraints) Performing minimization step: 1753. Total energy = 11340.9410 kcal/mol (11330.4891 without restraints) Performing minimization step: 1754. Total energy = 11336.7765 kcal/mol (11326.3256 without restraints) Performing minimization step: 1755. Total energy = 11332.6162 kcal/mol (11322.1664 without restraints) Performing minimization step: 1756. Total energy = 11328.4602 kcal/mol (11318.0114 without restraints) Performing minimization step: 1757. Total energy = 11324.3083 kcal/mol (11313.8606 without restraints) Performing minimization step: 1758. Total energy = 11320.1599 kcal/mol (11309.7133 without restraints) Performing minimization step: 1759. Total energy = 11316.0159 kcal/mol (11305.5702 without restraints) Performing minimization step: 1760. Total energy = 11311.8761 kcal/mol (11301.4314 without restraints) Performing minimization step: 1761. Total energy = 11307.7401 kcal/mol (11297.2964 without restraints) Performing minimization step: 1762. Total energy = 11303.6088 kcal/mol (11293.1662 without restraints) Performing minimization step: 1763. Total energy = 11299.4810 kcal/mol (11289.0396 without restraints) Performing minimization step: 1764. Total energy = 11295.3576 kcal/mol (11284.9170 without restraints) Performing minimization step: 1765. Total energy = 11291.2377 kcal/mol (11280.7981 without restraints) Performing minimization step: 1766. Total energy = 11287.1222 kcal/mol (11276.6837 without restraints) Performing minimization step: 1767. Total energy = 11283.0103 kcal/mol (11272.5729 without restraints) Performing minimization step: 1768. Total energy = 11278.9028 kcal/mol (11268.4665 without restraints) Performing minimization step: 1769. Total energy = 11274.7995 kcal/mol (11264.3642 without restraints) Performing minimization step: 1770. Total energy = 11270.6999 kcal/mol (11260.2656 without restraints) Performing minimization step: 1771. Total energy = 11266.6042 kcal/mol (11256.1709 without restraints) Performing minimization step: 1772. Total energy = 11262.5119 kcal/mol (11252.0793 without restraints) Performing minimization step: 1773. Total energy = 11258.4242 kcal/mol (11247.9930 without restraints) Performing minimization step: 1774. Total energy = 11254.3406 kcal/mol (11243.9105 without restraints) Performing minimization step: 1775. Total energy = 11250.2611 kcal/mol (11239.8318 without restraints) Performing minimization step: 1776. Total energy = 11246.1848 kcal/mol (11235.7567 without restraints) Performing minimization step: 1777. Total energy = 11242.1130 kcal/mol (11231.6860 without restraints) Performing minimization step: 1778. Total energy = 11238.0450 kcal/mol (11227.6189 without restraints) Performing minimization step: 1779. Total energy = 11233.9812 kcal/mol (11223.5562 without restraints) Performing minimization step: 1780. Total energy = 11229.9210 kcal/mol (11219.4970 without restraints) Performing minimization step: 1781. Total energy = 11225.8645 kcal/mol (11215.4416 without restraints) Performing minimization step: 1782. Total energy = 11221.8121 kcal/mol (11211.3902 without restraints) Performing minimization step: 1783. Total energy = 11217.7643 kcal/mol (11207.3433 without restraints) Performing minimization step: 1784. Total energy = 11213.7195 kcal/mol (11203.2996 without restraints) Performing minimization step: 1785. Total energy = 11209.6789 kcal/mol (11199.2601 without restraints) Performing minimization step: 1786. Total energy = 11205.6422 kcal/mol (11195.2245 without restraints) Performing minimization step: 1787. Total energy = 11201.6095 kcal/mol (11191.1927 without restraints) Performing minimization step: 1788. Total energy = 11197.5802 kcal/mol (11187.1644 without restraints) Performing minimization step: 1789. Total energy = 11193.5550 kcal/mol (11183.1402 without restraints) Performing minimization step: 1790. Total energy = 11189.5331 kcal/mol (11179.1193 without restraints) Performing minimization step: 1791. Total energy = 11185.5155 kcal/mol (11175.1028 without restraints) Performing minimization step: 1792. Total energy = 11181.5017 kcal/mol (11171.0899 without restraints) Performing minimization step: 1793. Total energy = 11177.4918 kcal/mol (11167.0810 without restraints) Performing minimization step: 1794. Total energy = 11173.4856 kcal/mol (11163.0759 without restraints) Performing minimization step: 1795. Total energy = 11169.4836 kcal/mol (11159.0749 without restraints) Performing minimization step: 1796. Total energy = 11165.4855 kcal/mol (11155.0778 without restraints) Performing minimization step: 1797. Total energy = 11161.4915 kcal/mol (11151.0849 without restraints) Performing minimization step: 1798. Total energy = 11157.5008 kcal/mol (11147.0953 without restraints) Performing minimization step: 1799. Total energy = 11153.5139 kcal/mol (11143.1093 without restraints) Performing minimization step: 1800. Total energy = 11149.5306 kcal/mol (11139.1269 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 11145.5510 kcal/mol (11135.1485 without restraints) Performing minimization step: 1802. Total energy = 11141.5758 kcal/mol (11131.1743 without restraints) Performing minimization step: 1803. Total energy = 11137.6040 kcal/mol (11127.2034 without restraints) Performing minimization step: 1804. Total energy = 11133.6366 kcal/mol (11123.2370 without restraints) Performing minimization step: 1805. Total energy = 11129.6722 kcal/mol (11119.2737 without restraints) Performing minimization step: 1806. Total energy = 11125.7116 kcal/mol (11115.3141 without restraints) Performing minimization step: 1807. Total energy = 11121.7547 kcal/mol (11111.3582 without restraints) Performing minimization step: 1808. Total energy = 11117.8012 kcal/mol (11107.4058 without restraints) Performing minimization step: 1809. Total energy = 11113.8517 kcal/mol (11103.4572 without restraints) Performing minimization step: 1810. Total energy = 11109.9062 kcal/mol (11099.5130 without restraints) Performing minimization step: 1811. Total energy = 11105.9649 kcal/mol (11095.5727 without restraints) Performing minimization step: 1812. Total energy = 11102.0272 kcal/mol (11091.6357 without restraints) Performing minimization step: 1813. Total energy = 11098.0925 kcal/mol (11087.7021 without restraints) Performing minimization step: 1814. Total energy = 11094.1618 kcal/mol (11083.7725 without restraints) Performing minimization step: 1815. Total energy = 11090.2347 kcal/mol (11079.8463 without restraints) Performing minimization step: 1816. Total energy = 11086.3110 kcal/mol (11075.9236 without restraints) Performing minimization step: 1817. Total energy = 11082.3912 kcal/mol (11072.0049 without restraints) Performing minimization step: 1818. Total energy = 11078.4754 kcal/mol (11068.0900 without restraints) Performing minimization step: 1819. Total energy = 11074.5629 kcal/mol (11064.1785 without restraints) Performing minimization step: 1820. Total energy = 11070.6541 kcal/mol (11060.2707 without restraints) Performing minimization step: 1821. Total energy = 11066.7489 kcal/mol (11056.3665 without restraints) Performing minimization step: 1822. Total energy = 11062.8471 kcal/mol (11052.4656 without restraints) Performing minimization step: 1823. Total energy = 11058.9493 kcal/mol (11048.5690 without restraints) Performing minimization step: 1824. Total energy = 11055.0554 kcal/mol (11044.6761 without restraints) Performing minimization step: 1825. Total energy = 11051.1650 kcal/mol (11040.7867 without restraints) Performing minimization step: 1826. Total energy = 11047.2778 kcal/mol (11036.9004 without restraints) Performing minimization step: 1827. Total energy = 11043.3945 kcal/mol (11033.0182 without restraints) Performing minimization step: 1828. Total energy = 11039.5156 kcal/mol (11029.1406 without restraints) Performing minimization step: 1829. Total energy = 11035.6399 kcal/mol (11025.2655 without restraints) Performing minimization step: 1830. Total energy = 11031.7672 kcal/mol (11021.3939 without restraints) Performing minimization step: 1831. Total energy = 11027.8983 kcal/mol (11017.5259 without restraints) Performing minimization step: 1832. Total energy = 11024.0330 kcal/mol (11013.6617 without restraints) Performing minimization step: 1833. Total energy = 11020.1715 kcal/mol (11009.8012 without restraints) Performing minimization step: 1834. Total energy = 11016.3133 kcal/mol (11005.9440 without restraints) Performing minimization step: 1835. Total energy = 11012.4588 kcal/mol (11002.0904 without restraints) Performing minimization step: 1836. Total energy = 11008.6079 kcal/mol (10998.2406 without restraints) Performing minimization step: 1837. Total energy = 11004.7605 kcal/mol (10994.3942 without restraints) Performing minimization step: 1838. Total energy = 11000.9164 kcal/mol (10990.5511 without restraints) Performing minimization step: 1839. Total energy = 10997.0759 kcal/mol (10986.7116 without restraints) Performing minimization step: 1840. Total energy = 10993.2389 kcal/mol (10982.8756 without restraints) Performing minimization step: 1841. Total energy = 10989.4052 kcal/mol (10979.0429 without restraints) Performing minimization step: 1842. Total energy = 10985.5752 kcal/mol (10975.2139 without restraints) Performing minimization step: 1843. Total energy = 10981.7492 kcal/mol (10971.3888 without restraints) Performing minimization step: 1844. Total energy = 10977.9260 kcal/mol (10967.5666 without restraints) Performing minimization step: 1845. Total energy = 10974.1066 kcal/mol (10963.7481 without restraints) Performing minimization step: 1846. Total energy = 10970.2903 kcal/mol (10959.9330 without restraints) Performing minimization step: 1847. Total energy = 10966.4779 kcal/mol (10956.1216 without restraints) Performing minimization step: 1848. Total energy = 10962.6692 kcal/mol (10952.3138 without restraints) Performing minimization step: 1849. Total energy = 10958.8637 kcal/mol (10948.5093 without restraints) Performing minimization step: 1850. Total energy = 10955.0617 kcal/mol (10944.7083 without restraints) Performing minimization step: 1851. Total energy = 10951.2631 kcal/mol (10940.9107 without restraints) Performing minimization step: 1852. Total energy = 10947.4676 kcal/mol (10937.1162 without restraints) Performing minimization step: 1853. Total energy = 10943.6763 kcal/mol (10933.3259 without restraints) Performing minimization step: 1854. Total energy = 10939.8883 kcal/mol (10929.5388 without restraints) Performing minimization step: 1855. Total energy = 10936.1042 kcal/mol (10925.7558 without restraints) Performing minimization step: 1856. Total energy = 10932.3230 kcal/mol (10921.9755 without restraints) Performing minimization step: 1857. Total energy = 10928.5454 kcal/mol (10918.1989 without restraints) Performing minimization step: 1858. Total energy = 10924.7712 kcal/mol (10914.4257 without restraints) Performing minimization step: 1859. Total energy = 10921.0003 kcal/mol (10910.6558 without restraints) Performing minimization step: 1860. Total energy = 10917.2324 kcal/mol (10906.8889 without restraints) Performing minimization step: 1861. Total energy = 10913.4682 kcal/mol (10903.1258 without restraints) Performing minimization step: 1862. Total energy = 10909.7075 kcal/mol (10899.3660 without restraints) Performing minimization step: 1863. Total energy = 10905.9502 kcal/mol (10895.6096 without restraints) Performing minimization step: 1864. Total energy = 10902.1964 kcal/mol (10891.8569 without restraints) Performing minimization step: 1865. Total energy = 10898.4460 kcal/mol (10888.1074 without restraints) Performing minimization step: 1866. Total energy = 10894.6986 kcal/mol (10884.3610 without restraints) Performing minimization step: 1867. Total energy = 10890.9551 kcal/mol (10880.6185 without restraints) Performing minimization step: 1868. Total energy = 10887.2145 kcal/mol (10876.8789 without restraints) Performing minimization step: 1869. Total energy = 10883.4771 kcal/mol (10873.1424 without restraints) Performing minimization step: 1870. Total energy = 10879.7432 kcal/mol (10869.4095 without restraints) Performing minimization step: 1871. Total energy = 10876.0128 kcal/mol (10865.6802 without restraints) Performing minimization step: 1872. Total energy = 10872.2855 kcal/mol (10861.9539 without restraints) Performing minimization step: 1873. Total energy = 10868.5616 kcal/mol (10858.2309 without restraints) Performing minimization step: 1874. Total energy = 10864.8407 kcal/mol (10854.5110 without restraints) Performing minimization step: 1875. Total energy = 10861.1234 kcal/mol (10850.7946 without restraints) Performing minimization step: 1876. Total energy = 10857.4094 kcal/mol (10847.0816 without restraints) Performing minimization step: 1877. Total energy = 10853.6988 kcal/mol (10843.3721 without restraints) Performing minimization step: 1878. Total energy = 10849.9918 kcal/mol (10839.6660 without restraints) Performing minimization step: 1879. Total energy = 10846.2877 kcal/mol (10835.9629 without restraints) Performing minimization step: 1880. Total energy = 10842.5874 kcal/mol (10832.2638 without restraints) Performing minimization step: 1881. Total energy = 10838.8904 kcal/mol (10828.5675 without restraints) Performing minimization step: 1882. Total energy = 10835.1966 kcal/mol (10824.8747 without restraints) Performing minimization step: 1883. Total energy = 10831.5059 kcal/mol (10821.1850 without restraints) Performing minimization step: 1884. Total energy = 10827.8180 kcal/mol (10817.4979 without restraints) Performing minimization step: 1885. Total energy = 10824.1328 kcal/mol (10813.8138 without restraints) Performing minimization step: 1886. Total energy = 10820.4511 kcal/mol (10810.1329 without restraints) Performing minimization step: 1887. Total energy = 10816.7728 kcal/mol (10806.4558 without restraints) Performing minimization step: 1888. Total energy = 10813.0981 kcal/mol (10802.7820 without restraints) Performing minimization step: 1889. Total energy = 10809.4262 kcal/mol (10799.1111 without restraints) Performing minimization step: 1890. Total energy = 10805.7583 kcal/mol (10795.4441 without restraints) Performing minimization step: 1891. Total energy = 10802.0932 kcal/mol (10791.7800 without restraints) Performing minimization step: 1892. Total energy = 10798.4316 kcal/mol (10788.1194 without restraints) Performing minimization step: 1893. Total energy = 10794.7729 kcal/mol (10784.4615 without restraints) Performing minimization step: 1894. Total energy = 10791.1173 kcal/mol (10780.8071 without restraints) Performing minimization step: 1895. Total energy = 10787.4651 kcal/mol (10777.1559 without restraints) Performing minimization step: 1896. Total energy = 10783.8159 kcal/mol (10773.5074 without restraints) Performing minimization step: 1897. Total energy = 10780.1695 kcal/mol (10769.8622 without restraints) Performing minimization step: 1898. Total energy = 10776.5268 kcal/mol (10766.2205 without restraints) Performing minimization step: 1899. Total energy = 10772.8872 kcal/mol (10762.5817 without restraints) Performing minimization step: 1900. Total energy = 10769.2506 kcal/mol (10758.9461 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 10765.6173 kcal/mol (10755.3139 without restraints) Performing minimization step: 1902. Total energy = 10761.9870 kcal/mol (10751.6845 without restraints) Performing minimization step: 1903. Total energy = 10758.3602 kcal/mol (10748.0587 without restraints) Performing minimization step: 1904. Total energy = 10754.7359 kcal/mol (10744.4354 without restraints) Performing minimization step: 1905. Total energy = 10751.1157 kcal/mol (10740.8161 without restraints) Performing minimization step: 1906. Total energy = 10747.4990 kcal/mol (10737.2004 without restraints) Performing minimization step: 1907. Total energy = 10743.8843 kcal/mol (10733.5864 without restraints) Performing minimization step: 1908. Total energy = 10740.2729 kcal/mol (10729.9762 without restraints) Performing minimization step: 1909. Total energy = 10736.6645 kcal/mol (10726.3687 without restraints) Performing minimization step: 1910. Total energy = 10733.0595 kcal/mol (10722.7647 without restraints) Performing minimization step: 1911. Total energy = 10729.4576 kcal/mol (10719.1638 without restraints) Performing minimization step: 1912. Total energy = 10725.8586 kcal/mol (10715.5657 without restraints) Performing minimization step: 1913. Total energy = 10722.2629 kcal/mol (10711.9711 without restraints) Performing minimization step: 1914. Total energy = 10718.6704 kcal/mol (10708.3795 without restraints) Performing minimization step: 1915. Total energy = 10715.0808 kcal/mol (10704.7909 without restraints) Performing minimization step: 1916. Total energy = 10711.4944 kcal/mol (10701.2055 without restraints) Performing minimization step: 1917. Total energy = 10707.9114 kcal/mol (10697.6234 without restraints) Performing minimization step: 1918. Total energy = 10704.3319 kcal/mol (10694.0449 without restraints) Performing minimization step: 1919. Total energy = 10700.7544 kcal/mol (10690.4683 without restraints) Performing minimization step: 1920. Total energy = 10697.1802 kcal/mol (10686.8950 without restraints) Performing minimization step: 1921. Total energy = 10693.6090 kcal/mol (10683.3248 without restraints) Performing minimization step: 1922. Total energy = 10690.0408 kcal/mol (10679.7576 without restraints) Performing minimization step: 1923. Total energy = 10686.4753 kcal/mol (10676.1929 without restraints) Performing minimization step: 1924. Total energy = 10682.9133 kcal/mol (10672.6321 without restraints) Performing minimization step: 1925. Total energy = 10679.3539 kcal/mol (10669.0736 without restraints) Performing minimization step: 1926. Total energy = 10675.7985 kcal/mol (10665.5190 without restraints) Performing minimization step: 1927. Total energy = 10672.2454 kcal/mol (10661.9668 without restraints) Performing minimization step: 1928. Total energy = 10668.6951 kcal/mol (10658.4175 without restraints) Performing minimization step: 1929. Total energy = 10665.1480 kcal/mol (10654.8714 without restraints) Performing minimization step: 1930. Total energy = 10661.6043 kcal/mol (10651.3289 without restraints) Performing minimization step: 1931. Total energy = 10658.0634 kcal/mol (10647.7887 without restraints) Performing minimization step: 1932. Total energy = 10654.5255 kcal/mol (10644.2520 without restraints) Performing minimization step: 1933. Total energy = 10650.9906 kcal/mol (10640.7178 without restraints) Performing minimization step: 1934. Total energy = 10647.4589 kcal/mol (10637.1872 without restraints) Performing minimization step: 1935. Total energy = 10643.9299 kcal/mol (10633.6595 without restraints) Performing minimization step: 1936. Total energy = 10640.4043 kcal/mol (10630.1344 without restraints) Performing minimization step: 1937. Total energy = 10636.8804 kcal/mol (10626.6115 without restraints) Performing minimization step: 1938. Total energy = 10633.3599 kcal/mol (10623.0920 without restraints) Performing minimization step: 1939. Total energy = 10629.8427 kcal/mol (10619.5758 without restraints) Performing minimization step: 1940. Total energy = 10626.3285 kcal/mol (10616.0624 without restraints) Performing minimization step: 1941. Total energy = 10622.8174 kcal/mol (10612.5523 without restraints) Performing minimization step: 1942. Total energy = 10619.3087 kcal/mol (10609.0445 without restraints) Performing minimization step: 1943. Total energy = 10615.8027 kcal/mol (10605.5395 without restraints) Performing minimization step: 1944. Total energy = 10612.3001 kcal/mol (10602.0379 without restraints) Performing minimization step: 1945. Total energy = 10608.8003 kcal/mol (10598.5389 without restraints) Performing minimization step: 1946. Total energy = 10605.3036 kcal/mol (10595.0432 without restraints) Performing minimization step: 1947. Total energy = 10601.8091 kcal/mol (10591.5497 without restraints) Performing minimization step: 1948. Total energy = 10598.3176 kcal/mol (10588.0591 without restraints) Performing minimization step: 1949. Total energy = 10594.8290 kcal/mol (10584.5715 without restraints) Performing minimization step: 1950. Total energy = 10591.3438 kcal/mol (10581.0874 without restraints) Performing minimization step: 1951. Total energy = 10587.8619 kcal/mol (10577.6061 without restraints) Performing minimization step: 1952. Total energy = 10584.3821 kcal/mol (10574.1276 without restraints) Performing minimization step: 1953. Total energy = 10580.9052 kcal/mol (10570.6515 without restraints) Performing minimization step: 1954. Total energy = 10577.4309 kcal/mol (10567.1781 without restraints) Performing minimization step: 1955. Total energy = 10573.9596 kcal/mol (10563.7078 without restraints) Performing minimization step: 1956. Total energy = 10570.4908 kcal/mol (10560.2398 without restraints) Performing minimization step: 1957. Total energy = 10567.0253 kcal/mol (10556.7754 without restraints) Performing minimization step: 1958. Total energy = 10563.5625 kcal/mol (10553.3134 without restraints) Performing minimization step: 1959. Total energy = 10560.1025 kcal/mol (10549.8544 without restraints) Performing minimization step: 1960. Total energy = 10556.6454 kcal/mol (10546.3984 without restraints) Performing minimization step: 1961. Total energy = 10553.1912 kcal/mol (10542.9450 without restraints) Performing minimization step: 1962. Total energy = 10549.7397 kcal/mol (10539.4944 without restraints) Performing minimization step: 1963. Total energy = 10546.2912 kcal/mol (10536.0469 without restraints) Performing minimization step: 1964. Total energy = 10542.8453 kcal/mol (10532.6019 without restraints) Performing minimization step: 1965. Total energy = 10539.4020 kcal/mol (10529.1595 without restraints) Performing minimization step: 1966. Total energy = 10535.9616 kcal/mol (10525.7201 without restraints) Performing minimization step: 1967. Total energy = 10532.5242 kcal/mol (10522.2836 without restraints) Performing minimization step: 1968. Total energy = 10529.0894 kcal/mol (10518.8497 without restraints) Performing minimization step: 1969. Total energy = 10525.6570 kcal/mol (10515.4183 without restraints) Performing minimization step: 1970. Total energy = 10522.2276 kcal/mol (10511.9898 without restraints) Performing minimization step: 1971. Total energy = 10518.8009 kcal/mol (10508.5641 without restraints) Performing minimization step: 1972. Total energy = 10515.3765 kcal/mol (10505.1406 without restraints) Performing minimization step: 1973. Total energy = 10511.9555 kcal/mol (10501.7206 without restraints) Performing minimization step: 1974. Total energy = 10508.5369 kcal/mol (10498.3029 without restraints) Performing minimization step: 1975. Total energy = 10505.1210 kcal/mol (10494.8879 without restraints) Performing minimization step: 1976. Total energy = 10501.7084 kcal/mol (10491.4765 without restraints) Performing minimization step: 1977. Total energy = 10498.2984 kcal/mol (10488.0672 without restraints) Performing minimization step: 1978. Total energy = 10494.8908 kcal/mol (10484.6606 without restraints) Performing minimization step: 1979. Total energy = 10491.4856 kcal/mol (10481.2561 without restraints) Performing minimization step: 1980. Total energy = 10488.0838 kcal/mol (10477.8555 without restraints) Performing minimization step: 1981. Total energy = 10484.6842 kcal/mol (10474.4567 without restraints) Performing minimization step: 1982. Total energy = 10481.2876 kcal/mol (10471.0611 without restraints) Performing minimization step: 1983. Total energy = 10477.8941 kcal/mol (10467.6687 without restraints) Performing minimization step: 1984. Total energy = 10474.5030 kcal/mol (10464.2785 without restraints) Performing minimization step: 1985. Total energy = 10471.1147 kcal/mol (10460.8910 without restraints) Performing minimization step: 1986. Total energy = 10467.7287 kcal/mol (10457.5059 without restraints) Performing minimization step: 1987. Total energy = 10464.3452 kcal/mol (10454.1233 without restraints) Performing minimization step: 1988. Total energy = 10460.9647 kcal/mol (10450.7438 without restraints) Performing minimization step: 1989. Total energy = 10457.5864 kcal/mol (10447.3663 without restraints) Performing minimization step: 1990. Total energy = 10454.2106 kcal/mol (10443.9915 without restraints) Performing minimization step: 1991. Total energy = 10450.8381 kcal/mol (10440.6200 without restraints) Performing minimization step: 1992. Total energy = 10447.4676 kcal/mol (10437.2503 without restraints) Performing minimization step: 1993. Total energy = 10444.1001 kcal/mol (10433.8838 without restraints) Performing minimization step: 1994. Total energy = 10440.7350 kcal/mol (10430.5196 without restraints) Performing minimization step: 1995. Total energy = 10437.3725 kcal/mol (10427.1580 without restraints) Performing minimization step: 1996. Total energy = 10434.0126 kcal/mol (10423.7991 without restraints) Performing minimization step: 1997. Total energy = 10430.6552 kcal/mol (10420.4424 without restraints) Performing minimization step: 1998. Total energy = 10427.3006 kcal/mol (10417.0889 without restraints) Performing minimization step: 1999. Total energy = 10423.9482 kcal/mol (10413.7374 without restraints) Performing minimization step: 2000. Total energy = 10420.5992 kcal/mol (10410.3895 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 10417.2526 kcal/mol (10407.0438 without restraints) Performing minimization step: 2002. Total energy = 10413.9079 kcal/mol (10403.6997 without restraints) Performing minimization step: 2003. Total energy = 10410.5656 kcal/mol (10400.3585 without restraints) Performing minimization step: 2004. Total energy = 10407.2263 kcal/mol (10397.0202 without restraints) Performing minimization step: 2005. Total energy = 10403.8897 kcal/mol (10393.6845 without restraints) Performing minimization step: 2006. Total energy = 10400.5556 kcal/mol (10390.3514 without restraints) Performing minimization step: 2007. Total energy = 10397.2238 kcal/mol (10387.0202 without restraints) Performing minimization step: 2008. Total energy = 10393.8940 kcal/mol (10383.6916 without restraints) Performing minimization step: 2009. Total energy = 10390.5678 kcal/mol (10380.3663 without restraints) Performing minimization step: 2010. Total energy = 10387.2436 kcal/mol (10377.0430 without restraints) Performing minimization step: 2011. Total energy = 10383.9220 kcal/mol (10373.7224 without restraints) Performing minimization step: 2012. Total energy = 10380.6028 kcal/mol (10370.4039 without restraints) Performing minimization step: 2013. Total energy = 10377.2865 kcal/mol (10367.0886 without restraints) Performing minimization step: 2014. Total energy = 10373.9722 kcal/mol (10363.7752 without restraints) Performing minimization step: 2015. Total energy = 10370.6605 kcal/mol (10360.4644 without restraints) Performing minimization step: 2016. Total energy = 10367.3513 kcal/mol (10357.1562 without restraints) Performing minimization step: 2017. Total energy = 10364.0445 kcal/mol (10353.8502 without restraints) Performing minimization step: 2018. Total energy = 10360.7405 kcal/mol (10350.5472 without restraints) Performing minimization step: 2019. Total energy = 10357.4387 kcal/mol (10347.2463 without restraints) Performing minimization step: 2020. Total energy = 10354.1392 kcal/mol (10343.9477 without restraints) Performing minimization step: 2021. Total energy = 10350.8420 kcal/mol (10340.6515 without restraints) Performing minimization step: 2022. Total energy = 10347.5478 kcal/mol (10337.3582 without restraints) Performing minimization step: 2023. Total energy = 10344.2559 kcal/mol (10334.0673 without restraints) Performing minimization step: 2024. Total energy = 10340.9666 kcal/mol (10330.7788 without restraints) Performing minimization step: 2025. Total energy = 10337.6796 kcal/mol (10327.4927 without restraints) Performing minimization step: 2026. Total energy = 10334.3949 kcal/mol (10324.2090 without restraints) Performing minimization step: 2027. Total energy = 10331.1127 kcal/mol (10320.9276 without restraints) Performing minimization step: 2028. Total energy = 10327.8329 kcal/mol (10317.6487 without restraints) Performing minimization step: 2029. Total energy = 10324.5555 kcal/mol (10314.3723 without restraints) Performing minimization step: 2030. Total energy = 10321.2801 kcal/mol (10311.0978 without restraints) Performing minimization step: 2031. Total energy = 10318.0068 kcal/mol (10307.8253 without restraints) Performing minimization step: 2032. Total energy = 10314.7365 kcal/mol (10304.5560 without restraints) Performing minimization step: 2033. Total energy = 10311.4686 kcal/mol (10301.2890 without restraints) Performing minimization step: 2034. Total energy = 10308.2032 kcal/mol (10298.0245 without restraints) Performing minimization step: 2035. Total energy = 10304.9405 kcal/mol (10294.7627 without restraints) Performing minimization step: 2036. Total energy = 10301.6801 kcal/mol (10291.5032 without restraints) Performing minimization step: 2037. Total energy = 10298.4218 kcal/mol (10288.2459 without restraints) Performing minimization step: 2038. Total energy = 10295.1659 kcal/mol (10284.9909 without restraints) Performing minimization step: 2039. Total energy = 10291.9120 kcal/mol (10281.7378 without restraints) Performing minimization step: 2040. Total energy = 10288.6607 kcal/mol (10278.4874 without restraints) Performing minimization step: 2041. Total energy = 10285.4117 kcal/mol (10275.2394 without restraints) Performing minimization step: 2042. Total energy = 10282.1650 kcal/mol (10271.9936 without restraints) Performing minimization step: 2043. Total energy = 10278.9203 kcal/mol (10268.7498 without restraints) Performing minimization step: 2044. Total energy = 10275.6781 kcal/mol (10265.5083 without restraints) Performing minimization step: 2045. Total energy = 10272.4382 kcal/mol (10262.2695 without restraints) Performing minimization step: 2046. Total energy = 10269.2009 kcal/mol (10259.0331 without restraints) Performing minimization step: 2047. Total energy = 10265.9657 kcal/mol (10255.7989 without restraints) Performing minimization step: 2048. Total energy = 10262.7331 kcal/mol (10252.5671 without restraints) Performing minimization step: 2049. Total energy = 10259.5025 kcal/mol (10249.3374 without restraints) Performing minimization step: 2050. Total energy = 10256.2745 kcal/mol (10246.1103 without restraints) Performing minimization step: 2051. Total energy = 10253.0485 kcal/mol (10242.8853 without restraints) Performing minimization step: 2052. Total energy = 10249.8247 kcal/mol (10239.6623 without restraints) Performing minimization step: 2053. Total energy = 10246.6028 kcal/mol (10236.4412 without restraints) Performing minimization step: 2054. Total energy = 10243.3834 kcal/mol (10233.2228 without restraints) Performing minimization step: 2055. Total energy = 10240.1665 kcal/mol (10230.0068 without restraints) Performing minimization step: 2056. Total energy = 10236.9515 kcal/mol (10226.7927 without restraints) Performing minimization step: 2057. Total energy = 10233.7387 kcal/mol (10223.5807 without restraints) Performing minimization step: 2058. Total energy = 10230.5283 kcal/mol (10220.3713 without restraints) Performing minimization step: 2059. Total energy = 10227.3204 kcal/mol (10217.1643 without restraints) Performing minimization step: 2060. Total energy = 10224.1146 kcal/mol (10213.9594 without restraints) Performing minimization step: 2061. Total energy = 10220.9110 kcal/mol (10210.7567 without restraints) Performing minimization step: 2062. Total energy = 10217.7098 kcal/mol (10207.5564 without restraints) Performing minimization step: 2063. Total energy = 10214.5103 kcal/mol (10204.3578 without restraints) Performing minimization step: 2064. Total energy = 10211.3132 kcal/mol (10201.1616 without restraints) Performing minimization step: 2065. Total energy = 10208.1185 kcal/mol (10197.9678 without restraints) Performing minimization step: 2066. Total energy = 10204.9264 kcal/mol (10194.7766 without restraints) Performing minimization step: 2067. Total energy = 10201.7359 kcal/mol (10191.5870 without restraints) Performing minimization step: 2068. Total energy = 10198.5476 kcal/mol (10188.3995 without restraints) Performing minimization step: 2069. Total energy = 10195.3614 kcal/mol (10185.2143 without restraints) Performing minimization step: 2070. Total energy = 10192.1774 kcal/mol (10182.0311 without restraints) Performing minimization step: 2071. Total energy = 10188.9957 kcal/mol (10178.8504 without restraints) Performing minimization step: 2072. Total energy = 10185.8161 kcal/mol (10175.6717 without restraints) Performing minimization step: 2073. Total energy = 10182.6385 kcal/mol (10172.4948 without restraints) Performing minimization step: 2074. Total energy = 10179.4629 kcal/mol (10169.3202 without restraints) Performing minimization step: 2075. Total energy = 10176.2898 kcal/mol (10166.1479 without restraints) Performing minimization step: 2076. Total energy = 10173.1189 kcal/mol (10162.9781 without restraints) Performing minimization step: 2077. Total energy = 10169.9505 kcal/mol (10159.8104 without restraints) Performing minimization step: 2078. Total energy = 10166.7836 kcal/mol (10156.6445 without restraints) Performing minimization step: 2079. Total energy = 10163.6191 kcal/mol (10153.4809 without restraints) Performing minimization step: 2080. Total energy = 10160.4563 kcal/mol (10150.3189 without restraints) Performing minimization step: 2081. Total energy = 10157.2954 kcal/mol (10147.1590 without restraints) Performing minimization step: 2082. Total energy = 10154.1368 kcal/mol (10144.0012 without restraints) Performing minimization step: 2083. Total energy = 10150.9802 kcal/mol (10140.8455 without restraints) Performing minimization step: 2084. Total energy = 10147.8261 kcal/mol (10137.6923 without restraints) Performing minimization step: 2085. Total energy = 10144.6736 kcal/mol (10134.5406 without restraints) Performing minimization step: 2086. Total energy = 10141.5232 kcal/mol (10131.3914 without restraints) Performing minimization step: 2087. Total energy = 10138.3756 kcal/mol (10128.2445 without restraints) Performing minimization step: 2088. Total energy = 10135.2301 kcal/mol (10125.0999 without restraints) Performing minimization step: 2089. Total energy = 10132.0862 kcal/mol (10121.9569 without restraints) Performing minimization step: 2090. Total energy = 10128.9447 kcal/mol (10118.8163 without restraints) Performing minimization step: 2091. Total energy = 10125.8050 kcal/mol (10115.6776 without restraints) Performing minimization step: 2092. Total energy = 10122.6673 kcal/mol (10112.5406 without restraints) Performing minimization step: 2093. Total energy = 10119.5309 kcal/mol (10109.4051 without restraints) Performing minimization step: 2094. Total energy = 10116.3967 kcal/mol (10106.2718 without restraints) Performing minimization step: 2095. Total energy = 10113.2650 kcal/mol (10103.1410 without restraints) Performing minimization step: 2096. Total energy = 10110.1357 kcal/mol (10100.0126 without restraints) Performing minimization step: 2097. Total energy = 10107.0084 kcal/mol (10096.8862 without restraints) Performing minimization step: 2098. Total energy = 10103.8830 kcal/mol (10093.7616 without restraints) Performing minimization step: 2099. Total energy = 10100.7592 kcal/mol (10090.6387 without restraints) Performing minimization step: 2100. Total energy = 10097.6370 kcal/mol (10087.5175 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 10094.5178 kcal/mol (10084.3992 without restraints) Performing minimization step: 2102. Total energy = 10091.4007 kcal/mol (10081.2827 without restraints) Performing minimization step: 2103. Total energy = 10088.2849 kcal/mol (10078.1679 without restraints) Performing minimization step: 2104. Total energy = 10085.1711 kcal/mol (10075.0550 without restraints) Performing minimization step: 2105. Total energy = 10082.0597 kcal/mol (10071.9446 without restraints) Performing minimization step: 2106. Total energy = 10078.9497 kcal/mol (10068.8357 without restraints) Performing minimization step: 2107. Total energy = 10075.8418 kcal/mol (10065.7284 without restraints) Performing minimization step: 2108. Total energy = 10072.7363 kcal/mol (10062.6236 without restraints) Performing minimization step: 2109. Total energy = 10069.6322 kcal/mol (10059.5205 without restraints) Performing minimization step: 2110. Total energy = 10066.5300 kcal/mol (10056.4192 without restraints) Performing minimization step: 2111. Total energy = 10063.4299 kcal/mol (10053.3201 without restraints) Performing minimization step: 2112. Total energy = 10060.3320 kcal/mol (10050.2229 without restraints) Performing minimization step: 2113. Total energy = 10057.2359 kcal/mol (10047.1278 without restraints) Performing minimization step: 2114. Total energy = 10054.1415 kcal/mol (10044.0342 without restraints) Performing minimization step: 2115. Total energy = 10051.0491 kcal/mol (10040.9426 without restraints) Performing minimization step: 2116. Total energy = 10047.9583 kcal/mol (10037.8527 without restraints) Performing minimization step: 2117. Total energy = 10044.8702 kcal/mol (10034.7656 without restraints) Performing minimization step: 2118. Total energy = 10041.7835 kcal/mol (10031.6797 without restraints) Performing minimization step: 2119. Total energy = 10038.6988 kcal/mol (10028.5960 without restraints) Performing minimization step: 2120. Total energy = 10035.6160 kcal/mol (10025.5140 without restraints) Performing minimization step: 2121. Total energy = 10032.5350 kcal/mol (10022.4338 without restraints) Performing minimization step: 2122. Total energy = 10029.4560 kcal/mol (10019.3557 without restraints) Performing minimization step: 2123. Total energy = 10026.3787 kcal/mol (10016.2793 without restraints) Performing minimization step: 2124. Total energy = 10023.3028 kcal/mol (10013.2042 without restraints) Performing minimization step: 2125. Total energy = 10020.2286 kcal/mol (10010.1309 without restraints) Performing minimization step: 2126. Total energy = 10017.1567 kcal/mol (10007.0600 without restraints) Performing minimization step: 2127. Total energy = 10014.0870 kcal/mol (10003.9911 without restraints) Performing minimization step: 2128. Total energy = 10011.0192 kcal/mol (10000.9241 without restraints) Performing minimization step: 2129. Total energy = 10007.9530 kcal/mol (9997.8588 without restraints) Performing minimization step: 2130. Total energy = 10004.8890 kcal/mol (9994.7960 without restraints) Performing minimization step: 2131. Total energy = 10001.8268 kcal/mol (9991.7343 without restraints) Performing minimization step: 2132. Total energy = 9998.7661 kcal/mol (9988.6745 without restraints) Performing minimization step: 2133. Total energy = 9995.7074 kcal/mol (9985.6167 without restraints) Performing minimization step: 2134. Total energy = 9992.6505 kcal/mol (9982.5610 without restraints) Performing minimization step: 2135. Total energy = 9989.5949 kcal/mol (9979.5059 without restraints) Performing minimization step: 2136. Total energy = 9986.5414 kcal/mol (9976.4534 without restraints) Performing minimization step: 2137. Total energy = 9983.4897 kcal/mol (9973.4025 without restraints) Performing minimization step: 2138. Total energy = 9980.4396 kcal/mol (9970.3533 without restraints) Performing minimization step: 2139. Total energy = 9977.3915 kcal/mol (9967.3060 without restraints) Performing minimization step: 2140. Total energy = 9974.3449 kcal/mol (9964.2603 without restraints) Performing minimization step: 2141. Total energy = 9971.3005 kcal/mol (9961.2167 without restraints) Performing minimization step: 2142. Total energy = 9968.2583 kcal/mol (9958.1753 without restraints) Performing minimization step: 2143. Total energy = 9965.2170 kcal/mol (9955.1349 without restraints) Performing minimization step: 2144. Total energy = 9962.1782 kcal/mol (9952.0970 without restraints) Performing minimization step: 2145. Total energy = 9959.1405 kcal/mol (9949.0600 without restraints) Performing minimization step: 2146. Total energy = 9956.1046 kcal/mol (9946.0252 without restraints) Performing minimization step: 2147. Total energy = 9953.0706 kcal/mol (9942.9920 without restraints) Performing minimization step: 2148. Total energy = 9950.0385 kcal/mol (9939.9609 without restraints) Performing minimization step: 2149. Total energy = 9947.0080 kcal/mol (9936.9312 without restraints) Performing minimization step: 2150. Total energy = 9943.9797 kcal/mol (9933.9038 without restraints) Performing minimization step: 2151. Total energy = 9940.9525 kcal/mol (9930.8774 without restraints) Performing minimization step: 2152. Total energy = 9937.9275 kcal/mol (9927.8534 without restraints) Performing minimization step: 2153. Total energy = 9934.9036 kcal/mol (9924.8303 without restraints) Performing minimization step: 2154. Total energy = 9931.8819 kcal/mol (9921.8094 without restraints) Performing minimization step: 2155. Total energy = 9928.8617 kcal/mol (9918.7901 without restraints) Performing minimization step: 2156. Total energy = 9925.8430 kcal/mol (9915.7722 without restraints) Performing minimization step: 2157. Total energy = 9922.8259 kcal/mol (9912.7560 without restraints) Performing minimization step: 2158. Total energy = 9919.8108 kcal/mol (9909.7417 without restraints) Performing minimization step: 2159. Total energy = 9916.7977 kcal/mol (9906.7294 without restraints) Performing minimization step: 2160. Total energy = 9913.7858 kcal/mol (9903.7185 without restraints) Performing minimization step: 2161. Total energy = 9910.7755 kcal/mol (9900.7090 without restraints) Performing minimization step: 2162. Total energy = 9907.7671 kcal/mol (9897.7015 without restraints) Performing minimization step: 2163. Total energy = 9904.7609 kcal/mol (9894.6961 without restraints) Performing minimization step: 2164. Total energy = 9901.7558 kcal/mol (9891.6919 without restraints) Performing minimization step: 2165. Total energy = 9898.7523 kcal/mol (9888.6891 without restraints) Performing minimization step: 2166. Total energy = 9895.7506 kcal/mol (9885.6885 without restraints) Performing minimization step: 2167. Total energy = 9892.7509 kcal/mol (9882.6896 without restraints) Performing minimization step: 2168. Total energy = 9889.7522 kcal/mol (9879.6917 without restraints) Performing minimization step: 2169. Total energy = 9886.7557 kcal/mol (9876.6961 without restraints) Performing minimization step: 2170. Total energy = 9883.7603 kcal/mol (9873.7015 without restraints) Performing minimization step: 2171. Total energy = 9880.7666 kcal/mol (9870.7087 without restraints) Performing minimization step: 2172. Total energy = 9877.7748 kcal/mol (9867.7178 without restraints) Performing minimization step: 2173. Total energy = 9874.7845 kcal/mol (9864.7283 without restraints) Performing minimization step: 2174. Total energy = 9871.7955 kcal/mol (9861.7402 without restraints) Performing minimization step: 2175. Total energy = 9868.8090 kcal/mol (9858.7545 without restraints) Performing minimization step: 2176. Total energy = 9865.8234 kcal/mol (9855.7698 without restraints) Performing minimization step: 2177. Total energy = 9862.8390 kcal/mol (9852.7862 without restraints) Performing minimization step: 2178. Total energy = 9859.8564 kcal/mol (9849.8045 without restraints) Performing minimization step: 2179. Total energy = 9856.8754 kcal/mol (9846.8243 without restraints) Performing minimization step: 2180. Total energy = 9853.8963 kcal/mol (9843.8463 without restraints) Performing minimization step: 2181. Total energy = 9850.9188 kcal/mol (9840.8695 without restraints) Performing minimization step: 2182. Total energy = 9847.9431 kcal/mol (9837.8946 without restraints) Performing minimization step: 2183. Total energy = 9844.9685 kcal/mol (9834.9209 without restraints) Performing minimization step: 2184. Total energy = 9841.9955 kcal/mol (9831.9488 without restraints) Performing minimization step: 2185. Total energy = 9839.0247 kcal/mol (9828.9788 without restraints) Performing minimization step: 2186. Total energy = 9836.0547 kcal/mol (9826.0096 without restraints) Performing minimization step: 2187. Total energy = 9833.0867 kcal/mol (9823.0426 without restraints) Performing minimization step: 2188. Total energy = 9830.1201 kcal/mol (9820.0768 without restraints) Performing minimization step: 2189. Total energy = 9827.1549 kcal/mol (9817.1124 without restraints) Performing minimization step: 2190. Total energy = 9824.1913 kcal/mol (9814.1496 without restraints) Performing minimization step: 2191. Total energy = 9821.2291 kcal/mol (9811.1882 without restraints) Performing minimization step: 2192. Total energy = 9818.2688 kcal/mol (9808.2289 without restraints) Performing minimization step: 2193. Total energy = 9815.3098 kcal/mol (9805.2706 without restraints) Performing minimization step: 2194. Total energy = 9812.3522 kcal/mol (9802.3139 without restraints) Performing minimization step: 2195. Total energy = 9809.3967 kcal/mol (9799.3592 without restraints) Performing minimization step: 2196. Total energy = 9806.4421 kcal/mol (9796.4054 without restraints) Performing minimization step: 2197. Total energy = 9803.4896 kcal/mol (9793.4539 without restraints) Performing minimization step: 2198. Total energy = 9800.5384 kcal/mol (9790.5035 without restraints) Performing minimization step: 2199. Total energy = 9797.5887 kcal/mol (9787.5547 without restraints) Performing minimization step: 2200. Total energy = 9794.6404 kcal/mol (9784.6072 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 9791.6935 kcal/mol (9781.6612 without restraints) Performing minimization step: 2202. Total energy = 9788.7476 kcal/mol (9778.7161 without restraints) Performing minimization step: 2203. Total energy = 9785.8035 kcal/mol (9775.7729 without restraints) Performing minimization step: 2204. Total energy = 9782.8610 kcal/mol (9772.8312 without restraints) Performing minimization step: 2205. Total energy = 9779.9199 kcal/mol (9769.8910 without restraints) Performing minimization step: 2206. Total energy = 9776.9801 kcal/mol (9766.9519 without restraints) Performing minimization step: 2207. Total energy = 9774.0415 kcal/mol (9764.0143 without restraints) Performing minimization step: 2208. Total energy = 9771.1048 kcal/mol (9761.0785 without restraints) Performing minimization step: 2209. Total energy = 9768.1697 kcal/mol (9758.1441 without restraints) Performing minimization step: 2210. Total energy = 9765.2356 kcal/mol (9755.2108 without restraints) Performing minimization step: 2211. Total energy = 9762.3035 kcal/mol (9752.2797 without restraints) Performing minimization step: 2212. Total energy = 9759.3723 kcal/mol (9749.3492 without restraints) Performing minimization step: 2213. Total energy = 9756.4425 kcal/mol (9746.4204 without restraints) Performing minimization step: 2214. Total energy = 9753.5138 kcal/mol (9743.4924 without restraints) Performing minimization step: 2215. Total energy = 9750.5869 kcal/mol (9740.5664 without restraints) Performing minimization step: 2216. Total energy = 9747.6616 kcal/mol (9737.6420 without restraints) Performing minimization step: 2217. Total energy = 9744.7377 kcal/mol (9734.7190 without restraints) Performing minimization step: 2218. Total energy = 9741.8153 kcal/mol (9731.7974 without restraints) Performing minimization step: 2219. Total energy = 9738.8943 kcal/mol (9728.8772 without restraints) Performing minimization step: 2220. Total energy = 9735.9744 kcal/mol (9725.9581 without restraints) Performing minimization step: 2221. Total energy = 9733.0562 kcal/mol (9723.0408 without restraints) Performing minimization step: 2222. Total energy = 9730.1391 kcal/mol (9720.1245 without restraints) Performing minimization step: 2223. Total energy = 9727.2237 kcal/mol (9717.2100 without restraints) Performing minimization step: 2224. Total energy = 9724.3098 kcal/mol (9714.2969 without restraints) Performing minimization step: 2225. Total energy = 9721.3971 kcal/mol (9711.3850 without restraints) Performing minimization step: 2226. Total energy = 9718.4857 kcal/mol (9708.4745 without restraints) Performing minimization step: 2227. Total energy = 9715.5757 kcal/mol (9705.5653 without restraints) Performing minimization step: 2228. Total energy = 9712.6670 kcal/mol (9702.6575 without restraints) Performing minimization step: 2229. Total energy = 9709.7599 kcal/mol (9699.7512 without restraints) Performing minimization step: 2230. Total energy = 9706.8543 kcal/mol (9696.8465 without restraints) Performing minimization step: 2231. Total energy = 9703.9498 kcal/mol (9693.9428 without restraints) Performing minimization step: 2232. Total energy = 9701.0465 kcal/mol (9691.0403 without restraints) Performing minimization step: 2233. Total energy = 9698.1446 kcal/mol (9688.1392 without restraints) Performing minimization step: 2234. Total energy = 9695.2446 kcal/mol (9685.2401 without restraints) Performing minimization step: 2235. Total energy = 9692.3451 kcal/mol (9682.3414 without restraints) Performing minimization step: 2236. Total energy = 9689.4474 kcal/mol (9679.4445 without restraints) Performing minimization step: 2237. Total energy = 9686.5508 kcal/mol (9676.5489 without restraints) Performing minimization step: 2238. Total energy = 9683.6562 kcal/mol (9673.6551 without restraints) Performing minimization step: 2239. Total energy = 9680.7627 kcal/mol (9670.7623 without restraints) Performing minimization step: 2240. Total energy = 9677.8700 kcal/mol (9667.8706 without restraints) Performing minimization step: 2241. Total energy = 9674.9785 kcal/mol (9664.9799 without restraints) Performing minimization step: 2242. Total energy = 9672.0888 kcal/mol (9662.0910 without restraints) Performing minimization step: 2243. Total energy = 9669.2000 kcal/mol (9659.2031 without restraints) Performing minimization step: 2244. Total energy = 9666.3129 kcal/mol (9656.3168 without restraints) Performing minimization step: 2245. Total energy = 9663.4270 kcal/mol (9653.4317 without restraints) Performing minimization step: 2246. Total energy = 9660.5423 kcal/mol (9650.5478 without restraints) Performing minimization step: 2247. Total energy = 9657.6590 kcal/mol (9647.6654 without restraints) Performing minimization step: 2248. Total energy = 9654.7768 kcal/mol (9644.7841 without restraints) Performing minimization step: 2249. Total energy = 9651.8962 kcal/mol (9641.9043 without restraints) Performing minimization step: 2250. Total energy = 9649.0166 kcal/mol (9639.0255 without restraints) Performing minimization step: 2251. Total energy = 9646.1382 kcal/mol (9636.1481 without restraints) Performing minimization step: 2252. Total energy = 9643.2617 kcal/mol (9633.2722 without restraints) Performing minimization step: 2253. Total energy = 9640.3861 kcal/mol (9630.3975 without restraints) Performing minimization step: 2254. Total energy = 9637.5117 kcal/mol (9627.5240 without restraints) Performing minimization step: 2255. Total energy = 9634.6382 kcal/mol (9624.6512 without restraints) Performing minimization step: 2256. Total energy = 9631.7661 kcal/mol (9621.7801 without restraints) Performing minimization step: 2257. Total energy = 9628.8961 kcal/mol (9618.9109 without restraints) Performing minimization step: 2258. Total energy = 9626.0266 kcal/mol (9616.0421 without restraints) Performing minimization step: 2259. Total energy = 9623.1583 kcal/mol (9613.1748 without restraints) Performing minimization step: 2260. Total energy = 9620.2916 kcal/mol (9610.3091 without restraints) Performing minimization step: 2261. Total energy = 9617.4260 kcal/mol (9607.4441 without restraints) Performing minimization step: 2262. Total energy = 9614.5614 kcal/mol (9604.5803 without restraints) Performing minimization step: 2263. Total energy = 9611.6981 kcal/mol (9601.7178 without restraints) Performing minimization step: 2264. Total energy = 9608.8359 kcal/mol (9598.8564 without restraints) Performing minimization step: 2265. Total energy = 9605.9747 kcal/mol (9595.9961 without restraints) Performing minimization step: 2266. Total energy = 9603.1149 kcal/mol (9593.1371 without restraints) Performing minimization step: 2267. Total energy = 9600.2564 kcal/mol (9590.2794 without restraints) Performing minimization step: 2268. Total energy = 9597.3999 kcal/mol (9587.4237 without restraints) Performing minimization step: 2269. Total energy = 9594.5439 kcal/mol (9584.5686 without restraints) Performing minimization step: 2270. Total energy = 9591.6891 kcal/mol (9581.7146 without restraints) Performing minimization step: 2271. Total energy = 9588.8354 kcal/mol (9578.8618 without restraints) Performing minimization step: 2272. Total energy = 9585.9829 kcal/mol (9576.0101 without restraints) Performing minimization step: 2273. Total energy = 9583.1318 kcal/mol (9573.1598 without restraints) Performing minimization step: 2274. Total energy = 9580.2814 kcal/mol (9570.3102 without restraints) Performing minimization step: 2275. Total energy = 9577.4325 kcal/mol (9567.4623 without restraints) Performing minimization step: 2276. Total energy = 9574.5849 kcal/mol (9564.6154 without restraints) Performing minimization step: 2277. Total energy = 9571.7385 kcal/mol (9561.7700 without restraints) Performing minimization step: 2278. Total energy = 9568.8930 kcal/mol (9558.9253 without restraints) Performing minimization step: 2279. Total energy = 9566.0488 kcal/mol (9556.0818 without restraints) Performing minimization step: 2280. Total energy = 9563.2058 kcal/mol (9553.2396 without restraints) Performing minimization step: 2281. Total energy = 9560.3638 kcal/mol (9550.3985 without restraints) Performing minimization step: 2282. Total energy = 9557.5230 kcal/mol (9547.5585 without restraints) Performing minimization step: 2283. Total energy = 9554.6837 kcal/mol (9544.7201 without restraints) Performing minimization step: 2284. Total energy = 9551.8455 kcal/mol (9541.8827 without restraints) Performing minimization step: 2285. Total energy = 9549.0082 kcal/mol (9539.0462 without restraints) Performing minimization step: 2286. Total energy = 9546.1721 kcal/mol (9536.2108 without restraints) Performing minimization step: 2287. Total energy = 9543.3372 kcal/mol (9533.3769 without restraints) Performing minimization step: 2288. Total energy = 9540.5031 kcal/mol (9530.5436 without restraints) Performing minimization step: 2289. Total energy = 9537.6708 kcal/mol (9527.7121 without restraints) Performing minimization step: 2290. Total energy = 9534.8391 kcal/mol (9524.8812 without restraints) Performing minimization step: 2291. Total energy = 9532.0087 kcal/mol (9522.0516 without restraints) Performing minimization step: 2292. Total energy = 9529.1792 kcal/mol (9519.2231 without restraints) Performing minimization step: 2293. Total energy = 9526.3507 kcal/mol (9516.3953 without restraints) Performing minimization step: 2294. Total energy = 9523.5236 kcal/mol (9513.5690 without restraints) Performing minimization step: 2295. Total energy = 9520.6976 kcal/mol (9510.7438 without restraints) Performing minimization step: 2296. Total energy = 9517.8723 kcal/mol (9507.9194 without restraints) Performing minimization step: 2297. Total energy = 9515.0487 kcal/mol (9505.0966 without restraints) Performing minimization step: 2298. Total energy = 9512.2252 kcal/mol (9502.2738 without restraints) Performing minimization step: 2299. Total energy = 9509.4038 kcal/mol (9499.4533 without restraints) Performing minimization step: 2300. Total energy = 9506.5833 kcal/mol (9496.6338 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 9503.7636 kcal/mol (9493.8148 without restraints) Performing minimization step: 2302. Total energy = 9500.9452 kcal/mol (9490.9973 without restraints) Performing minimization step: 2303. Total energy = 9498.1280 kcal/mol (9488.1808 without restraints) Performing minimization step: 2304. Total energy = 9495.3116 kcal/mol (9485.3653 without restraints) Performing minimization step: 2305. Total energy = 9492.4970 kcal/mol (9482.5515 without restraints) Performing minimization step: 2306. Total energy = 9489.6833 kcal/mol (9479.7386 without restraints) Performing minimization step: 2307. Total energy = 9486.8705 kcal/mol (9476.9267 without restraints) Performing minimization step: 2308. Total energy = 9484.0592 kcal/mol (9474.1162 without restraints) Performing minimization step: 2309. Total energy = 9481.2483 kcal/mol (9471.3059 without restraints) Performing minimization step: 2310. Total energy = 9478.4386 kcal/mol (9468.4972 without restraints) Performing minimization step: 2311. Total energy = 9475.6300 kcal/mol (9465.6894 without restraints) Performing minimization step: 2312. Total energy = 9472.8223 kcal/mol (9462.8825 without restraints) Performing minimization step: 2313. Total energy = 9470.0156 kcal/mol (9460.0765 without restraints) Performing minimization step: 2314. Total energy = 9467.2098 kcal/mol (9457.2717 without restraints) Performing minimization step: 2315. Total energy = 9464.4054 kcal/mol (9454.4681 without restraints) Performing minimization step: 2316. Total energy = 9461.6022 kcal/mol (9451.6657 without restraints) Performing minimization step: 2317. Total energy = 9458.7996 kcal/mol (9448.8640 without restraints) Performing minimization step: 2318. Total energy = 9455.9988 kcal/mol (9446.0639 without restraints) Performing minimization step: 2319. Total energy = 9453.1985 kcal/mol (9443.2646 without restraints) Performing minimization step: 2320. Total energy = 9450.3991 kcal/mol (9440.4660 without restraints) Performing minimization step: 2321. Total energy = 9447.6009 kcal/mol (9437.6685 without restraints) Performing minimization step: 2322. Total energy = 9444.8036 kcal/mol (9434.8721 without restraints) Performing minimization step: 2323. Total energy = 9442.0074 kcal/mol (9432.0766 without restraints) Performing minimization step: 2324. Total energy = 9439.2120 kcal/mol (9429.2821 without restraints) Performing minimization step: 2325. Total energy = 9436.4179 kcal/mol (9426.4890 without restraints) Performing minimization step: 2326. Total energy = 9433.6248 kcal/mol (9423.6965 without restraints) Performing minimization step: 2327. Total energy = 9430.8328 kcal/mol (9420.9054 without restraints) Performing minimization step: 2328. Total energy = 9428.0418 kcal/mol (9418.1152 without restraints) Performing minimization step: 2329. Total energy = 9425.2521 kcal/mol (9415.3263 without restraints) Performing minimization step: 2330. Total energy = 9422.4630 kcal/mol (9412.5380 without restraints) Performing minimization step: 2331. Total energy = 9419.6746 kcal/mol (9409.7505 without restraints) Performing minimization step: 2332. Total energy = 9416.8877 kcal/mol (9406.9643 without restraints) Performing minimization step: 2333. Total energy = 9414.1016 kcal/mol (9404.1790 without restraints) Performing minimization step: 2334. Total energy = 9411.3163 kcal/mol (9401.3946 without restraints) Performing minimization step: 2335. Total energy = 9408.5324 kcal/mol (9398.6116 without restraints) Performing minimization step: 2336. Total energy = 9405.7490 kcal/mol (9395.8289 without restraints) Performing minimization step: 2337. Total energy = 9402.9663 kcal/mol (9393.0471 without restraints) Performing minimization step: 2338. Total energy = 9400.1856 kcal/mol (9390.2672 without restraints) Performing minimization step: 2339. Total energy = 9397.4056 kcal/mol (9387.4880 without restraints) Performing minimization step: 2340. Total energy = 9394.6264 kcal/mol (9384.7098 without restraints) Performing minimization step: 2341. Total energy = 9391.8483 kcal/mol (9381.9323 without restraints) Performing minimization step: 2342. Total energy = 9389.0715 kcal/mol (9379.1563 without restraints) Performing minimization step: 2343. Total energy = 9386.2951 kcal/mol (9376.3808 without restraints) Performing minimization step: 2344. Total energy = 9383.5201 kcal/mol (9373.6066 without restraints) Performing minimization step: 2345. Total energy = 9380.7457 kcal/mol (9370.8330 without restraints) Performing minimization step: 2346. Total energy = 9377.9723 kcal/mol (9368.0606 without restraints) Performing minimization step: 2347. Total energy = 9375.1999 kcal/mol (9365.2888 without restraints) Performing minimization step: 2348. Total energy = 9372.4283 kcal/mol (9362.5181 without restraints) Performing minimization step: 2349. Total energy = 9369.6577 kcal/mol (9359.7483 without restraints) Performing minimization step: 2350. Total energy = 9366.8886 kcal/mol (9356.9800 without restraints) Performing minimization step: 2351. Total energy = 9364.1197 kcal/mol (9354.2118 without restraints) Performing minimization step: 2352. Total energy = 9361.3518 kcal/mol (9351.4448 without restraints) Performing minimization step: 2353. Total energy = 9358.5847 kcal/mol (9348.6783 without restraints) Performing minimization step: 2354. Total energy = 9355.8185 kcal/mol (9345.9132 without restraints) Performing minimization step: 2355. Total energy = 9353.0536 kcal/mol (9343.1492 without restraints) Performing minimization step: 2356. Total energy = 9350.2897 kcal/mol (9340.3860 without restraints) Performing minimization step: 2357. Total energy = 9347.5266 kcal/mol (9337.6238 without restraints) Performing minimization step: 2358. Total energy = 9344.7647 kcal/mol (9334.8626 without restraints) Performing minimization step: 2359. Total energy = 9342.0033 kcal/mol (9332.1021 without restraints) Performing minimization step: 2360. Total energy = 9339.2427 kcal/mol (9329.3423 without restraints) Performing minimization step: 2361. Total energy = 9336.4831 kcal/mol (9326.5834 without restraints) Performing minimization step: 2362. Total energy = 9333.7243 kcal/mol (9323.8255 without restraints) Performing minimization step: 2363. Total energy = 9330.9668 kcal/mol (9321.0688 without restraints) Performing minimization step: 2364. Total energy = 9328.2101 kcal/mol (9318.3129 without restraints) Performing minimization step: 2365. Total energy = 9325.4543 kcal/mol (9315.5579 without restraints) Performing minimization step: 2366. Total energy = 9322.6995 kcal/mol (9312.8041 without restraints) Performing minimization step: 2367. Total energy = 9319.9455 kcal/mol (9310.0508 without restraints) Performing minimization step: 2368. Total energy = 9317.1922 kcal/mol (9307.2982 without restraints) Performing minimization step: 2369. Total energy = 9314.4399 kcal/mol (9304.5468 without restraints) Performing minimization step: 2370. Total energy = 9311.6885 kcal/mol (9301.7963 without restraints) Performing minimization step: 2371. Total energy = 9308.9383 kcal/mol (9299.0467 without restraints) Performing minimization step: 2372. Total energy = 9306.1889 kcal/mol (9296.2982 without restraints) Performing minimization step: 2373. Total energy = 9303.4402 kcal/mol (9293.5503 without restraints) Performing minimization step: 2374. Total energy = 9300.6925 kcal/mol (9290.8034 without restraints) Performing minimization step: 2375. Total energy = 9297.9457 kcal/mol (9288.0574 without restraints) Performing minimization step: 2376. Total energy = 9295.1998 kcal/mol (9285.3124 without restraints) Performing minimization step: 2377. Total energy = 9292.4547 kcal/mol (9282.5681 without restraints) Performing minimization step: 2378. Total energy = 9289.7105 kcal/mol (9279.8247 without restraints) Performing minimization step: 2379. Total energy = 9286.9670 kcal/mol (9277.0820 without restraints) Performing minimization step: 2380. Total energy = 9284.2251 kcal/mol (9274.3409 without restraints) Performing minimization step: 2381. Total energy = 9281.4834 kcal/mol (9271.6001 without restraints) Performing minimization step: 2382. Total energy = 9278.7427 kcal/mol (9268.8601 without restraints) Performing minimization step: 2383. Total energy = 9276.0029 kcal/mol (9266.1210 without restraints) Performing minimization step: 2384. Total energy = 9273.2639 kcal/mol (9263.3829 without restraints) Performing minimization step: 2385. Total energy = 9270.5258 kcal/mol (9260.6457 without restraints) Performing minimization step: 2386. Total energy = 9267.7885 kcal/mol (9257.9092 without restraints) Performing minimization step: 2387. Total energy = 9265.0520 kcal/mol (9255.1736 without restraints) Performing minimization step: 2388. Total energy = 9262.3167 kcal/mol (9252.4390 without restraints) Performing minimization step: 2389. Total energy = 9259.5822 kcal/mol (9249.7054 without restraints) Performing minimization step: 2390. Total energy = 9256.8489 kcal/mol (9246.9729 without restraints) Performing minimization step: 2391. Total energy = 9254.1159 kcal/mol (9244.2406 without restraints) Performing minimization step: 2392. Total energy = 9251.3839 kcal/mol (9241.5095 without restraints) Performing minimization step: 2393. Total energy = 9248.6526 kcal/mol (9238.7790 without restraints) Performing minimization step: 2394. Total energy = 9245.9223 kcal/mol (9236.0495 without restraints) Performing minimization step: 2395. Total energy = 9243.1927 kcal/mol (9233.3207 without restraints) Performing minimization step: 2396. Total energy = 9240.4637 kcal/mol (9230.5925 without restraints) Performing minimization step: 2397. Total energy = 9237.7356 kcal/mol (9227.8653 without restraints) Performing minimization step: 2398. Total energy = 9235.0087 kcal/mol (9225.1392 without restraints) Performing minimization step: 2399. Total energy = 9232.2821 kcal/mol (9222.4134 without restraints) Performing minimization step: 2400. Total energy = 9229.5565 kcal/mol (9219.6885 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 9226.8321 kcal/mol (9216.9650 without restraints) Performing minimization step: 2402. Total energy = 9224.1085 kcal/mol (9214.2421 without restraints) Performing minimization step: 2403. Total energy = 9221.3857 kcal/mol (9211.5202 without restraints) Performing minimization step: 2404. Total energy = 9218.6637 kcal/mol (9208.7990 without restraints) Performing minimization step: 2405. Total energy = 9215.9421 kcal/mol (9206.0782 without restraints) Performing minimization step: 2406. Total energy = 9213.2229 kcal/mol (9203.3598 without restraints) Performing minimization step: 2407. Total energy = 9210.5027 kcal/mol (9200.6405 without restraints) Performing minimization step: 2408. Total energy = 9207.7839 kcal/mol (9197.9226 without restraints) Performing minimization step: 2409. Total energy = 9205.0659 kcal/mol (9195.2053 without restraints) Performing minimization step: 2410. Total energy = 9202.3489 kcal/mol (9192.4891 without restraints) Performing minimization step: 2411. Total energy = 9199.6324 kcal/mol (9189.7734 without restraints) Performing minimization step: 2412. Total energy = 9196.9166 kcal/mol (9187.0583 without restraints) Performing minimization step: 2413. Total energy = 9194.2021 kcal/mol (9184.3447 without restraints) Performing minimization step: 2414. Total energy = 9191.4881 kcal/mol (9181.6316 without restraints) Performing minimization step: 2415. Total energy = 9188.7750 kcal/mol (9178.9192 without restraints) Performing minimization step: 2416. Total energy = 9186.0626 kcal/mol (9176.2076 without restraints) Performing minimization step: 2417. Total energy = 9183.3512 kcal/mol (9173.4972 without restraints) Performing minimization step: 2418. Total energy = 9180.6402 kcal/mol (9170.7867 without restraints) Performing minimization step: 2419. Total energy = 9177.9302 kcal/mol (9168.0777 without restraints) Performing minimization step: 2420. Total energy = 9175.2210 kcal/mol (9165.3693 without restraints) Performing minimization step: 2421. Total energy = 9172.5125 kcal/mol (9162.6616 without restraints) Performing minimization step: 2422. Total energy = 9169.8050 kcal/mol (9159.9549 without restraints) Performing minimization step: 2423. Total energy = 9167.0983 kcal/mol (9157.2491 without restraints) Performing minimization step: 2424. Total energy = 9164.3920 kcal/mol (9154.5435 without restraints) Performing minimization step: 2425. Total energy = 9161.6871 kcal/mol (9151.8394 without restraints) Performing minimization step: 2426. Total energy = 9158.9822 kcal/mol (9149.1353 without restraints) Performing minimization step: 2427. Total energy = 9156.2787 kcal/mol (9146.4329 without restraints) Performing minimization step: 2428. Total energy = 9153.5763 kcal/mol (9143.7310 without restraints) Performing minimization step: 2429. Total energy = 9150.8743 kcal/mol (9141.0299 without restraints) Performing minimization step: 2430. Total energy = 9148.1730 kcal/mol (9138.3295 without restraints) Performing minimization step: 2431. Total energy = 9145.4729 kcal/mol (9135.6301 without restraints) Performing minimization step: 2432. Total energy = 9142.7732 kcal/mol (9132.9313 without restraints) Performing minimization step: 2433. Total energy = 9140.0742 kcal/mol (9130.2330 without restraints) Performing minimization step: 2434. Total energy = 9137.3761 kcal/mol (9127.5357 without restraints) Performing minimization step: 2435. Total energy = 9134.6785 kcal/mol (9124.8390 without restraints) Performing minimization step: 2436. Total energy = 9131.9815 kcal/mol (9122.1427 without restraints) Performing minimization step: 2437. Total energy = 9129.2856 kcal/mol (9119.4477 without restraints) Performing minimization step: 2438. Total energy = 9126.5904 kcal/mol (9116.7533 without restraints) Performing minimization step: 2439. Total energy = 9123.8959 kcal/mol (9114.0596 without restraints) Performing minimization step: 2440. Total energy = 9121.2023 kcal/mol (9111.3669 without restraints) Performing minimization step: 2441. Total energy = 9118.5094 kcal/mol (9108.6747 without restraints) Performing minimization step: 2442. Total energy = 9115.8167 kcal/mol (9105.9828 without restraints) Performing minimization step: 2443. Total energy = 9113.1252 kcal/mol (9103.2921 without restraints) Performing minimization step: 2444. Total energy = 9110.4351 kcal/mol (9100.6029 without restraints) Performing minimization step: 2445. Total energy = 9107.7450 kcal/mol (9097.9135 without restraints) Performing minimization step: 2446. Total energy = 9105.0557 kcal/mol (9095.2251 without restraints) Performing minimization step: 2447. Total energy = 9102.3673 kcal/mol (9092.5374 without restraints) Performing minimization step: 2448. Total energy = 9099.6798 kcal/mol (9089.8508 without restraints) Performing minimization step: 2449. Total energy = 9096.9928 kcal/mol (9087.1646 without restraints) Performing minimization step: 2450. Total energy = 9094.3069 kcal/mol (9084.4796 without restraints) Performing minimization step: 2451. Total energy = 9091.6218 kcal/mol (9081.7952 without restraints) Performing minimization step: 2452. Total energy = 9088.9370 kcal/mol (9079.1113 without restraints) Performing minimization step: 2453. Total energy = 9086.2532 kcal/mol (9076.4285 without restraints) Performing minimization step: 2454. Total energy = 9083.5704 kcal/mol (9073.7462 without restraints) Performing minimization step: 2455. Total energy = 9080.8881 kcal/mol (9071.0648 without restraints) Performing minimization step: 2456. Total energy = 9078.2062 kcal/mol (9068.3837 without restraints) Performing minimization step: 2457. Total energy = 9075.5252 kcal/mol (9065.7035 without restraints) Performing minimization step: 2458. Total energy = 9072.8452 kcal/mol (9063.0243 without restraints) Performing minimization step: 2459. Total energy = 9070.1657 kcal/mol (9060.3456 without restraints) Performing minimization step: 2460. Total energy = 9067.4869 kcal/mol (9057.6676 without restraints) Performing minimization step: 2461. Total energy = 9064.8093 kcal/mol (9054.9908 without restraints) Performing minimization step: 2462. Total energy = 9062.1320 kcal/mol (9052.3143 without restraints) Performing minimization step: 2463. Total energy = 9059.4554 kcal/mol (9049.6386 without restraints) Performing minimization step: 2464. Total energy = 9056.7800 kcal/mol (9046.9639 without restraints) Performing minimization step: 2465. Total energy = 9054.1049 kcal/mol (9044.2897 without restraints) Performing minimization step: 2466. Total energy = 9051.4307 kcal/mol (9041.6163 without restraints) Performing minimization step: 2467. Total energy = 9048.7571 kcal/mol (9038.9435 without restraints) Performing minimization step: 2468. Total energy = 9046.0844 kcal/mol (9036.2715 without restraints) Performing minimization step: 2469. Total energy = 9043.4121 kcal/mol (9033.6001 without restraints) Performing minimization step: 2470. Total energy = 9040.7406 kcal/mol (9030.9294 without restraints) Performing minimization step: 2471. Total energy = 9038.0701 kcal/mol (9028.2597 without restraints) Performing minimization step: 2472. Total energy = 9035.4005 kcal/mol (9025.5911 without restraints) Performing minimization step: 2473. Total energy = 9032.7311 kcal/mol (9022.9223 without restraints) Performing minimization step: 2474. Total energy = 9030.0628 kcal/mol (9020.2549 without restraints) Performing minimization step: 2475. Total energy = 9027.3949 kcal/mol (9017.5878 without restraints) Performing minimization step: 2476. Total energy = 9024.7278 kcal/mol (9014.9215 without restraints) Performing minimization step: 2477. Total energy = 9022.0621 kcal/mol (9012.2566 without restraints) Performing minimization step: 2478. Total energy = 9019.3966 kcal/mol (9009.5919 without restraints) Performing minimization step: 2479. Total energy = 9016.7312 kcal/mol (9006.9273 without restraints) Performing minimization step: 2480. Total energy = 9014.0669 kcal/mol (9004.2638 without restraints) Performing minimization step: 2481. Total energy = 9011.4033 kcal/mol (9001.6010 without restraints) Performing minimization step: 2482. Total energy = 9008.7401 kcal/mol (8998.9387 without restraints) Performing minimization step: 2483. Total energy = 9006.0781 kcal/mol (8996.2774 without restraints) Performing minimization step: 2484. Total energy = 9003.4168 kcal/mol (8993.6170 without restraints) Performing minimization step: 2485. Total energy = 9000.7562 kcal/mol (8990.9573 without restraints) Performing minimization step: 2486. Total energy = 8998.0965 kcal/mol (8988.2983 without restraints) Performing minimization step: 2487. Total energy = 8995.4367 kcal/mol (8985.6393 without restraints) Performing minimization step: 2488. Total energy = 8992.7785 kcal/mol (8982.9819 without restraints) Performing minimization step: 2489. Total energy = 8990.1210 kcal/mol (8980.3252 without restraints) Performing minimization step: 2490. Total energy = 8987.4641 kcal/mol (8977.6691 without restraints) Performing minimization step: 2491. Total energy = 8984.8074 kcal/mol (8975.0132 without restraints) Performing minimization step: 2492. Total energy = 8982.1517 kcal/mol (8972.3583 without restraints) Performing minimization step: 2493. Total energy = 8979.4966 kcal/mol (8969.7041 without restraints) Performing minimization step: 2494. Total energy = 8976.8423 kcal/mol (8967.0506 without restraints) Performing minimization step: 2495. Total energy = 8974.1894 kcal/mol (8964.3986 without restraints) Performing minimization step: 2496. Total energy = 8971.5367 kcal/mol (8961.7465 without restraints) Performing minimization step: 2497. Total energy = 8968.8841 kcal/mol (8959.0948 without restraints) Performing minimization step: 2498. Total energy = 8966.2328 kcal/mol (8956.4444 without restraints) Performing minimization step: 2499. Total energy = 8963.5820 kcal/mol (8953.7943 without restraints) Performing minimization step: 2500. Total energy = 8960.9323 kcal/mol (8951.1455 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 8958.2827 kcal/mol (8948.4964 without restraints) Performing minimization step: 2502. Total energy = 8955.6340 kcal/mol (8945.8488 without restraints) Performing minimization step: 2503. Total energy = 8952.9864 kcal/mol (8943.2020 without restraints) Performing minimization step: 2504. Total energy = 8950.3391 kcal/mol (8940.5555 without restraints) Performing minimization step: 2505. Total energy = 8947.6922 kcal/mol (8937.9094 without restraints) Performing minimization step: 2506. Total energy = 8945.0465 kcal/mol (8935.2645 without restraints) Performing minimization step: 2507. Total energy = 8942.4013 kcal/mol (8932.6201 without restraints) Performing minimization step: 2508. Total energy = 8939.7567 kcal/mol (8929.9764 without restraints) Performing minimization step: 2509. Total energy = 8937.1131 kcal/mol (8927.3335 without restraints) Performing minimization step: 2510. Total energy = 8934.4701 kcal/mol (8924.6913 without restraints) Performing minimization step: 2511. Total energy = 8931.8277 kcal/mol (8922.0497 without restraints) Performing minimization step: 2512. Total energy = 8929.1859 kcal/mol (8919.4088 without restraints) Performing minimization step: 2513. Total energy = 8926.5454 kcal/mol (8916.7692 without restraints) Performing minimization step: 2514. Total energy = 8923.9053 kcal/mol (8914.1299 without restraints) Performing minimization step: 2515. Total energy = 8921.2655 kcal/mol (8911.4909 without restraints) Performing minimization step: 2516. Total energy = 8918.6273 kcal/mol (8908.8534 without restraints) Performing minimization step: 2517. Total energy = 8915.9887 kcal/mol (8906.2158 without restraints) Performing minimization step: 2518. Total energy = 8913.3515 kcal/mol (8903.5792 without restraints) Performing minimization step: 2519. Total energy = 8910.7146 kcal/mol (8900.9431 without restraints) Performing minimization step: 2520. Total energy = 8908.0786 kcal/mol (8898.3082 without restraints) Performing minimization step: 2521. Total energy = 8905.4432 kcal/mol (8895.6733 without restraints) Performing minimization step: 2522. Total energy = 8902.8079 kcal/mol (8893.0389 without restraints) Performing minimization step: 2523. Total energy = 8900.1740 kcal/mol (8890.4058 without restraints) Performing minimization step: 2524. Total energy = 8897.5406 kcal/mol (8887.7732 without restraints) Performing minimization step: 2525. Total energy = 8894.9079 kcal/mol (8885.1413 without restraints) Performing minimization step: 2526. Total energy = 8892.2759 kcal/mol (8882.5102 without restraints) Performing minimization step: 2527. Total energy = 8889.6446 kcal/mol (8879.8797 without restraints) Performing minimization step: 2528. Total energy = 8887.0143 kcal/mol (8877.2503 without restraints) Performing minimization step: 2529. Total energy = 8884.3847 kcal/mol (8874.6215 without restraints) Performing minimization step: 2530. Total energy = 8881.7557 kcal/mol (8871.9933 without restraints) Performing minimization step: 2531. Total energy = 8879.1271 kcal/mol (8869.3655 without restraints) Performing minimization step: 2532. Total energy = 8876.4990 kcal/mol (8866.7382 without restraints) Performing minimization step: 2533. Total energy = 8873.8718 kcal/mol (8864.1118 without restraints) Performing minimization step: 2534. Total energy = 8871.2459 kcal/mol (8861.4867 without restraints) Performing minimization step: 2535. Total energy = 8868.6203 kcal/mol (8858.8619 without restraints) Performing minimization step: 2536. Total energy = 8865.9956 kcal/mol (8856.2381 without restraints) Performing minimization step: 2537. Total energy = 8863.3710 kcal/mol (8853.6142 without restraints) Performing minimization step: 2538. Total energy = 8860.7472 kcal/mol (8850.9913 without restraints) Performing minimization step: 2539. Total energy = 8858.1240 kcal/mol (8848.3689 without restraints) Performing minimization step: 2540. Total energy = 8855.5017 kcal/mol (8845.7474 without restraints) Performing minimization step: 2541. Total energy = 8852.8800 kcal/mol (8843.1263 without restraints) Performing minimization step: 2542. Total energy = 8850.2590 kcal/mol (8840.5063 without restraints) Performing minimization step: 2543. Total energy = 8847.6388 kcal/mol (8837.8869 without restraints) Performing minimization step: 2544. Total energy = 8845.0192 kcal/mol (8835.2680 without restraints) Performing minimization step: 2545. Total energy = 8842.4006 kcal/mol (8832.6504 without restraints) Performing minimization step: 2546. Total energy = 8839.7825 kcal/mol (8830.0330 without restraints) Performing minimization step: 2547. Total energy = 8837.1653 kcal/mol (8827.4167 without restraints) Performing minimization step: 2548. Total energy = 8834.5487 kcal/mol (8824.8010 without restraints) Performing minimization step: 2549. Total energy = 8831.9326 kcal/mol (8822.1857 without restraints) Performing minimization step: 2550. Total energy = 8829.3175 kcal/mol (8819.5715 without restraints) Performing minimization step: 2551. Total energy = 8826.7028 kcal/mol (8816.9574 without restraints) Performing minimization step: 2552. Total energy = 8824.0889 kcal/mol (8814.3444 without restraints) Performing minimization step: 2553. Total energy = 8821.4751 kcal/mol (8811.7313 without restraints) Performing minimization step: 2554. Total energy = 8818.8628 kcal/mol (8809.1200 without restraints) Performing minimization step: 2555. Total energy = 8816.2508 kcal/mol (8806.5087 without restraints) Performing minimization step: 2556. Total energy = 8813.6394 kcal/mol (8803.8981 without restraints) Performing minimization step: 2557. Total energy = 8811.0289 kcal/mol (8801.2885 without restraints) Performing minimization step: 2558. Total energy = 8808.4191 kcal/mol (8798.6795 without restraints) Performing minimization step: 2559. Total energy = 8805.8105 kcal/mol (8796.0719 without restraints) Performing minimization step: 2560. Total energy = 8803.2024 kcal/mol (8793.4645 without restraints) Performing minimization step: 2561. Total energy = 8800.5946 kcal/mol (8790.8575 without restraints) Performing minimization step: 2562. Total energy = 8797.9877 kcal/mol (8788.2514 without restraints) Performing minimization step: 2563. Total energy = 8795.3817 kcal/mol (8785.6462 without restraints) Performing minimization step: 2564. Total energy = 8792.7762 kcal/mol (8783.0417 without restraints) Performing minimization step: 2565. Total energy = 8790.1714 kcal/mol (8780.4376 without restraints) Performing minimization step: 2566. Total energy = 8787.5670 kcal/mol (8777.8340 without restraints) Performing minimization step: 2567. Total energy = 8784.9635 kcal/mol (8775.2312 without restraints) Performing minimization step: 2568. Total energy = 8782.3606 kcal/mol (8772.6292 without restraints) Performing minimization step: 2569. Total energy = 8779.7584 kcal/mol (8770.0278 without restraints) Performing minimization step: 2570. Total energy = 8777.1569 kcal/mol (8767.4272 without restraints) Performing minimization step: 2571. Total energy = 8774.5565 kcal/mol (8764.8277 without restraints) Performing minimization step: 2572. Total energy = 8771.9566 kcal/mol (8762.2285 without restraints) Performing minimization step: 2573. Total energy = 8769.3573 kcal/mol (8759.6299 without restraints) Performing minimization step: 2574. Total energy = 8766.7586 kcal/mol (8757.0321 without restraints) Performing minimization step: 2575. Total energy = 8764.1606 kcal/mol (8754.4349 without restraints) Performing minimization step: 2576. Total energy = 8761.5634 kcal/mol (8751.8387 without restraints) Performing minimization step: 2577. Total energy = 8758.9678 kcal/mol (8749.2442 without restraints) Performing minimization step: 2578. Total energy = 8756.3728 kcal/mol (8746.6497 without restraints) Performing minimization step: 2579. Total energy = 8753.7779 kcal/mol (8744.0555 without restraints) Performing minimization step: 2580. Total energy = 8751.1832 kcal/mol (8741.4617 without restraints) Performing minimization step: 2581. Total energy = 8748.5895 kcal/mol (8738.8687 without restraints) Performing minimization step: 2582. Total energy = 8745.9964 kcal/mol (8736.2766 without restraints) Performing minimization step: 2583. Total energy = 8743.4040 kcal/mol (8733.6850 without restraints) Performing minimization step: 2584. Total energy = 8740.8127 kcal/mol (8731.0946 without restraints) Performing minimization step: 2585. Total energy = 8738.2223 kcal/mol (8728.5049 without restraints) Performing minimization step: 2586. Total energy = 8735.6317 kcal/mol (8725.9151 without restraints) Performing minimization step: 2587. Total energy = 8733.0423 kcal/mol (8723.3265 without restraints) Performing minimization step: 2588. Total energy = 8730.4538 kcal/mol (8720.7388 without restraints) Performing minimization step: 2589. Total energy = 8727.8657 kcal/mol (8718.1516 without restraints) Performing minimization step: 2590. Total energy = 8725.2785 kcal/mol (8715.5652 without restraints) Performing minimization step: 2591. Total energy = 8722.6919 kcal/mol (8712.9794 without restraints) Performing minimization step: 2592. Total energy = 8720.1060 kcal/mol (8710.3943 without restraints) Performing minimization step: 2593. Total energy = 8717.5209 kcal/mol (8707.8101 without restraints) Performing minimization step: 2594. Total energy = 8714.9365 kcal/mol (8705.2266 without restraints) Performing minimization step: 2595. Total energy = 8712.3528 kcal/mol (8702.6436 without restraints) Performing minimization step: 2596. Total energy = 8709.7693 kcal/mol (8700.0609 without restraints) Performing minimization step: 2597. Total energy = 8707.1868 kcal/mol (8697.4792 without restraints) Performing minimization step: 2598. Total energy = 8704.6051 kcal/mol (8694.8984 without restraints) Performing minimization step: 2599. Total energy = 8702.0241 kcal/mol (8692.3183 without restraints) Performing minimization step: 2600. Total energy = 8699.4440 kcal/mol (8689.7389 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 8696.8646 kcal/mol (8687.1604 without restraints) Performing minimization step: 2602. Total energy = 8694.2857 kcal/mol (8684.5821 without restraints) Performing minimization step: 2603. Total energy = 8691.7076 kcal/mol (8682.0051 without restraints) Performing minimization step: 2604. Total energy = 8689.1305 kcal/mol (8679.4288 without restraints) Performing minimization step: 2605. Total energy = 8686.5540 kcal/mol (8676.8531 without restraints) Performing minimization step: 2606. Total energy = 8683.9782 kcal/mol (8674.2782 without restraints) Performing minimization step: 2607. Total energy = 8681.4032 kcal/mol (8671.7040 without restraints) Performing minimization step: 2608. Total energy = 8678.8286 kcal/mol (8669.1302 without restraints) Performing minimization step: 2609. Total energy = 8676.2552 kcal/mol (8666.5576 without restraints) Performing minimization step: 2610. Total energy = 8673.6821 kcal/mol (8663.9853 without restraints) Performing minimization step: 2611. Total energy = 8671.1106 kcal/mol (8661.4147 without restraints) Performing minimization step: 2612. Total energy = 8668.5394 kcal/mol (8658.8443 without restraints) Performing minimization step: 2613. Total energy = 8665.9683 kcal/mol (8656.2740 without restraints) Performing minimization step: 2614. Total energy = 8663.3985 kcal/mol (8653.7053 without restraints) Performing minimization step: 2615. Total energy = 8660.8297 kcal/mol (8651.1372 without restraints) Performing minimization step: 2616. Total energy = 8658.2611 kcal/mol (8648.5694 without restraints) Performing minimization step: 2617. Total energy = 8655.6933 kcal/mol (8646.0024 without restraints) Performing minimization step: 2618. Total energy = 8653.1265 kcal/mol (8643.4364 without restraints) Performing minimization step: 2619. Total energy = 8650.5605 kcal/mol (8640.8712 without restraints) Performing minimization step: 2620. Total energy = 8647.9950 kcal/mol (8638.3066 without restraints) Performing minimization step: 2621. Total energy = 8645.4302 kcal/mol (8635.7426 without restraints) Performing minimization step: 2622. Total energy = 8642.8661 kcal/mol (8633.1794 without restraints) Performing minimization step: 2623. Total energy = 8640.3028 kcal/mol (8630.6169 without restraints) Performing minimization step: 2624. Total energy = 8637.7406 kcal/mol (8628.0556 without restraints) Performing minimization step: 2625. Total energy = 8635.1789 kcal/mol (8625.4946 without restraints) Performing minimization step: 2626. Total energy = 8632.6184 kcal/mol (8622.9349 without restraints) Performing minimization step: 2627. Total energy = 8630.0582 kcal/mol (8620.3756 without restraints) Performing minimization step: 2628. Total energy = 8627.4984 kcal/mol (8617.8167 without restraints) Performing minimization step: 2629. Total energy = 8624.9396 kcal/mol (8615.2587 without restraints) Performing minimization step: 2630. Total energy = 8622.3816 kcal/mol (8612.7015 without restraints) Performing minimization step: 2631. Total energy = 8619.8242 kcal/mol (8610.1450 without restraints) Performing minimization step: 2632. Total energy = 8617.2672 kcal/mol (8607.5887 without restraints) Performing minimization step: 2633. Total energy = 8614.7115 kcal/mol (8605.0340 without restraints) Performing minimization step: 2634. Total energy = 8612.1568 kcal/mol (8602.4800 without restraints) Performing minimization step: 2635. Total energy = 8609.6027 kcal/mol (8599.9268 without restraints) Performing minimization step: 2636. Total energy = 8607.0495 kcal/mol (8597.3744 without restraints) Performing minimization step: 2637. Total energy = 8604.4973 kcal/mol (8594.8230 without restraints) Performing minimization step: 2638. Total energy = 8601.9452 kcal/mol (8592.2718 without restraints) Performing minimization step: 2639. Total energy = 8599.3940 kcal/mol (8589.7214 without restraints) Performing minimization step: 2640. Total energy = 8596.8435 kcal/mol (8587.1718 without restraints) Performing minimization step: 2641. Total energy = 8594.2940 kcal/mol (8584.6232 without restraints) Performing minimization step: 2642. Total energy = 8591.7451 kcal/mol (8582.0751 without restraints) Performing minimization step: 2643. Total energy = 8589.1971 kcal/mol (8579.5279 without restraints) Performing minimization step: 2644. Total energy = 8586.6500 kcal/mol (8576.9816 without restraints) Performing minimization step: 2645. Total energy = 8584.1033 kcal/mol (8574.4358 without restraints) Performing minimization step: 2646. Total energy = 8581.5581 kcal/mol (8571.8915 without restraints) Performing minimization step: 2647. Total energy = 8579.0132 kcal/mol (8569.3474 without restraints) Performing minimization step: 2648. Total energy = 8576.4692 kcal/mol (8566.8042 without restraints) Performing minimization step: 2649. Total energy = 8573.9263 kcal/mol (8564.2622 without restraints) Performing minimization step: 2650. Total energy = 8571.3838 kcal/mol (8561.7206 without restraints) Performing minimization step: 2651. Total energy = 8568.8422 kcal/mol (8559.1797 without restraints) Performing minimization step: 2652. Total energy = 8566.3011 kcal/mol (8556.6394 without restraints) Performing minimization step: 2653. Total energy = 8563.7607 kcal/mol (8554.1000 without restraints) Performing minimization step: 2654. Total energy = 8561.2213 kcal/mol (8551.5614 without restraints) Performing minimization step: 2655. Total energy = 8558.6826 kcal/mol (8549.0235 without restraints) Performing minimization step: 2656. Total energy = 8556.1447 kcal/mol (8546.4865 without restraints) Performing minimization step: 2657. Total energy = 8553.6075 kcal/mol (8543.9501 without restraints) Performing minimization step: 2658. Total energy = 8551.0719 kcal/mol (8541.4154 without restraints) Performing minimization step: 2659. Total energy = 8548.5365 kcal/mol (8538.8808 without restraints) Performing minimization step: 2660. Total energy = 8546.0018 kcal/mol (8536.3469 without restraints) Performing minimization step: 2661. Total energy = 8543.4677 kcal/mol (8533.8136 without restraints) Performing minimization step: 2662. Total energy = 8540.9345 kcal/mol (8531.2812 without restraints) Performing minimization step: 2663. Total energy = 8538.4025 kcal/mol (8528.7502 without restraints) Performing minimization step: 2664. Total energy = 8535.8711 kcal/mol (8526.2196 without restraints) Performing minimization step: 2665. Total energy = 8533.3407 kcal/mol (8523.6901 without restraints) Performing minimization step: 2666. Total energy = 8530.8111 kcal/mol (8521.1613 without restraints) Performing minimization step: 2667. Total energy = 8528.2822 kcal/mol (8518.6333 without restraints) Performing minimization step: 2668. Total energy = 8525.7539 kcal/mol (8516.1058 without restraints) Performing minimization step: 2669. Total energy = 8523.2266 kcal/mol (8513.5795 without restraints) Performing minimization step: 2670. Total energy = 8520.7001 kcal/mol (8511.0537 without restraints) Performing minimization step: 2671. Total energy = 8518.1744 kcal/mol (8508.5288 without restraints) Performing minimization step: 2672. Total energy = 8515.6496 kcal/mol (8506.0049 without restraints) Performing minimization step: 2673. Total energy = 8513.1255 kcal/mol (8503.4816 without restraints) Performing minimization step: 2674. Total energy = 8510.6023 kcal/mol (8500.9592 without restraints) Performing minimization step: 2675. Total energy = 8508.0798 kcal/mol (8498.4376 without restraints) Performing minimization step: 2676. Total energy = 8505.5580 kcal/mol (8495.9167 without restraints) Performing minimization step: 2677. Total energy = 8503.0366 kcal/mol (8493.3960 without restraints) Performing minimization step: 2678. Total energy = 8500.5164 kcal/mol (8490.8768 without restraints) Performing minimization step: 2679. Total energy = 8497.9970 kcal/mol (8488.3583 without restraints) Performing minimization step: 2680. Total energy = 8495.4790 kcal/mol (8485.8411 without restraints) Performing minimization step: 2681. Total energy = 8492.9619 kcal/mol (8483.3249 without restraints) Performing minimization step: 2682. Total energy = 8490.4458 kcal/mol (8480.8096 without restraints) Performing minimization step: 2683. Total energy = 8487.9301 kcal/mol (8478.2948 without restraints) Performing minimization step: 2684. Total energy = 8485.4152 kcal/mol (8475.7807 without restraints) Performing minimization step: 2685. Total energy = 8482.9013 kcal/mol (8473.2678 without restraints) Performing minimization step: 2686. Total energy = 8480.3880 kcal/mol (8470.7552 without restraints) Performing minimization step: 2687. Total energy = 8477.8754 kcal/mol (8468.2434 without restraints) Performing minimization step: 2688. Total energy = 8475.3636 kcal/mol (8465.7325 without restraints) Performing minimization step: 2689. Total energy = 8472.8530 kcal/mol (8463.2228 without restraints) Performing minimization step: 2690. Total energy = 8470.3435 kcal/mol (8460.7141 without restraints) Performing minimization step: 2691. Total energy = 8467.8344 kcal/mol (8458.2060 without restraints) Performing minimization step: 2692. Total energy = 8465.3263 kcal/mol (8455.6987 without restraints) Performing minimization step: 2693. Total energy = 8462.8191 kcal/mol (8453.1923 without restraints) Performing minimization step: 2694. Total energy = 8460.3126 kcal/mol (8450.6869 without restraints) Performing minimization step: 2695. Total energy = 8457.8074 kcal/mol (8448.1825 without restraints) Performing minimization step: 2696. Total energy = 8455.3028 kcal/mol (8445.6786 without restraints) Performing minimization step: 2697. Total energy = 8452.7990 kcal/mol (8443.1757 without restraints) Performing minimization step: 2698. Total energy = 8450.2966 kcal/mol (8440.6743 without restraints) Performing minimization step: 2699. Total energy = 8447.7948 kcal/mol (8438.1732 without restraints) Performing minimization step: 2700. Total energy = 8445.2938 kcal/mol (8435.6731 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 8442.7931 kcal/mol (8433.1732 without restraints) Performing minimization step: 2702. Total energy = 8440.2939 kcal/mol (8430.6749 without restraints) Performing minimization step: 2703. Total energy = 8437.7955 kcal/mol (8428.1774 without restraints) Performing minimization step: 2704. Total energy = 8435.2977 kcal/mol (8425.6804 without restraints) Performing minimization step: 2705. Total energy = 8432.8013 kcal/mol (8423.1849 without restraints) Performing minimization step: 2706. Total energy = 8430.3055 kcal/mol (8420.6900 without restraints) Performing minimization step: 2707. Total energy = 8427.8108 kcal/mol (8418.1961 without restraints) Performing minimization step: 2708. Total energy = 8425.3166 kcal/mol (8415.7028 without restraints) Performing minimization step: 2709. Total energy = 8422.8234 kcal/mol (8413.2105 without restraints) Performing minimization step: 2710. Total energy = 8420.3316 kcal/mol (8410.7195 without restraints) Performing minimization step: 2711. Total energy = 8417.8404 kcal/mol (8408.2292 without restraints) Performing minimization step: 2712. Total energy = 8415.3500 kcal/mol (8405.7397 without restraints) Performing minimization step: 2713. Total energy = 8412.8607 kcal/mol (8403.2512 without restraints) Performing minimization step: 2714. Total energy = 8410.3728 kcal/mol (8400.7643 without restraints) Performing minimization step: 2715. Total energy = 8407.8851 kcal/mol (8398.2774 without restraints) Performing minimization step: 2716. Total energy = 8405.3984 kcal/mol (8395.7915 without restraints) Performing minimization step: 2717. Total energy = 8402.9125 kcal/mol (8393.3064 without restraints) Performing minimization step: 2718. Total energy = 8400.4276 kcal/mol (8390.8225 without restraints) Performing minimization step: 2719. Total energy = 8397.9436 kcal/mol (8388.3393 without restraints) Performing minimization step: 2720. Total energy = 8395.4606 kcal/mol (8385.8572 without restraints) Performing minimization step: 2721. Total energy = 8392.9784 kcal/mol (8383.3759 without restraints) Performing minimization step: 2722. Total energy = 8390.4967 kcal/mol (8380.8950 without restraints) Performing minimization step: 2723. Total energy = 8388.0163 kcal/mol (8378.4155 without restraints) Performing minimization step: 2724. Total energy = 8385.5367 kcal/mol (8375.9369 without restraints) Performing minimization step: 2725. Total energy = 8383.0584 kcal/mol (8373.4594 without restraints) Performing minimization step: 2726. Total energy = 8380.5810 kcal/mol (8370.9830 without restraints) Performing minimization step: 2727. Total energy = 8378.1046 kcal/mol (8368.5072 without restraints) Performing minimization step: 2728. Total energy = 8375.6290 kcal/mol (8366.0326 without restraints) Performing minimization step: 2729. Total energy = 8373.1545 kcal/mol (8363.5589 without restraints) Performing minimization step: 2730. Total energy = 8370.6807 kcal/mol (8361.0860 without restraints) Performing minimization step: 2731. Total energy = 8368.2080 kcal/mol (8358.6142 without restraints) Performing minimization step: 2732. Total energy = 8365.7365 kcal/mol (8356.1436 without restraints) Performing minimization step: 2733. Total energy = 8363.2657 kcal/mol (8353.6736 without restraints) Performing minimization step: 2734. Total energy = 8360.7954 kcal/mol (8351.2041 without restraints) Performing minimization step: 2735. Total energy = 8358.3264 kcal/mol (8348.7362 without restraints) Performing minimization step: 2736. Total energy = 8355.8587 kcal/mol (8346.2692 without restraints) Performing minimization step: 2737. Total energy = 8353.3916 kcal/mol (8343.8030 without restraints) Performing minimization step: 2738. Total energy = 8350.9250 kcal/mol (8341.3373 without restraints) Performing minimization step: 2739. Total energy = 8348.4596 kcal/mol (8338.8727 without restraints) Performing minimization step: 2740. Total energy = 8345.9953 kcal/mol (8336.4094 without restraints) Performing minimization step: 2741. Total energy = 8343.5321 kcal/mol (8333.9470 without restraints) Performing minimization step: 2742. Total energy = 8341.0699 kcal/mol (8331.4858 without restraints) Performing minimization step: 2743. Total energy = 8338.6086 kcal/mol (8329.0253 without restraints) Performing minimization step: 2744. Total energy = 8336.1488 kcal/mol (8326.5664 without restraints) Performing minimization step: 2745. Total energy = 8333.6898 kcal/mol (8324.1083 without restraints) Performing minimization step: 2746. Total energy = 8331.2315 kcal/mol (8321.6509 without restraints) Performing minimization step: 2747. Total energy = 8328.7744 kcal/mol (8319.1946 without restraints) Performing minimization step: 2748. Total energy = 8326.3177 kcal/mol (8316.7388 without restraints) Performing minimization step: 2749. Total energy = 8323.8622 kcal/mol (8314.2842 without restraints) Performing minimization step: 2750. Total energy = 8321.4079 kcal/mol (8311.8307 without restraints) Performing minimization step: 2751. Total energy = 8318.9545 kcal/mol (8309.3782 without restraints) Performing minimization step: 2752. Total energy = 8316.5021 kcal/mol (8306.9267 without restraints) Performing minimization step: 2753. Total energy = 8314.0507 kcal/mol (8304.4762 without restraints) Performing minimization step: 2754. Total energy = 8311.6003 kcal/mol (8302.0267 without restraints) Performing minimization step: 2755. Total energy = 8309.1506 kcal/mol (8299.5778 without restraints) Performing minimization step: 2756. Total energy = 8306.7020 kcal/mol (8297.1301 without restraints) Performing minimization step: 2757. Total energy = 8304.2545 kcal/mol (8294.6835 without restraints) Performing minimization step: 2758. Total energy = 8301.8083 kcal/mol (8292.2382 without restraints) Performing minimization step: 2759. Total energy = 8299.3627 kcal/mol (8289.7935 without restraints) Performing minimization step: 2760. Total energy = 8296.9181 kcal/mol (8287.3497 without restraints) Performing minimization step: 2761. Total energy = 8294.4749 kcal/mol (8284.9076 without restraints) Performing minimization step: 2762. Total energy = 8292.0330 kcal/mol (8282.4665 without restraints) Performing minimization step: 2763. Total energy = 8289.5921 kcal/mol (8280.0265 without restraints) Performing minimization step: 2764. Total energy = 8287.1518 kcal/mol (8277.5871 without restraints) Performing minimization step: 2765. Total energy = 8284.7124 kcal/mol (8275.1485 without restraints) Performing minimization step: 2766. Total energy = 8282.2745 kcal/mol (8272.7117 without restraints) Performing minimization step: 2767. Total energy = 8279.8375 kcal/mol (8270.2754 without restraints) Performing minimization step: 2768. Total energy = 8277.4011 kcal/mol (8267.8401 without restraints) Performing minimization step: 2769. Total energy = 8274.9661 kcal/mol (8265.4058 without restraints) Performing minimization step: 2770. Total energy = 8272.5320 kcal/mol (8262.9727 without restraints) Performing minimization step: 2771. Total energy = 8270.0993 kcal/mol (8260.5409 without restraints) Performing minimization step: 2772. Total energy = 8267.6675 kcal/mol (8258.1099 without restraints) Performing minimization step: 2773. Total energy = 8265.2370 kcal/mol (8255.6804 without restraints) Performing minimization step: 2774. Total energy = 8262.8077 kcal/mol (8253.2519 without restraints) Performing minimization step: 2775. Total energy = 8260.3789 kcal/mol (8250.8241 without restraints) Performing minimization step: 2776. Total energy = 8257.9508 kcal/mol (8248.3969 without restraints) Performing minimization step: 2777. Total energy = 8255.5240 kcal/mol (8245.9709 without restraints) Performing minimization step: 2778. Total energy = 8253.0986 kcal/mol (8243.5464 without restraints) Performing minimization step: 2779. Total energy = 8250.6741 kcal/mol (8241.1228 without restraints) Performing minimization step: 2780. Total energy = 8248.2517 kcal/mol (8238.7013 without restraints) Performing minimization step: 2781. Total energy = 8245.8295 kcal/mol (8236.2800 without restraints) Performing minimization step: 2782. Total energy = 8243.4083 kcal/mol (8233.8597 without restraints) Performing minimization step: 2783. Total energy = 8240.9884 kcal/mol (8231.4408 without restraints) Performing minimization step: 2784. Total energy = 8238.5694 kcal/mol (8229.0226 without restraints) Performing minimization step: 2785. Total energy = 8236.1514 kcal/mol (8226.6055 without restraints) Performing minimization step: 2786. Total energy = 8233.7346 kcal/mol (8224.1897 without restraints) Performing minimization step: 2787. Total energy = 8231.3189 kcal/mol (8221.7748 without restraints) Performing minimization step: 2788. Total energy = 8228.9041 kcal/mol (8219.3609 without restraints) Performing minimization step: 2789. Total energy = 8226.4905 kcal/mol (8216.9482 without restraints) Performing minimization step: 2790. Total energy = 8224.0783 kcal/mol (8214.5369 without restraints) Performing minimization step: 2791. Total energy = 8221.6664 kcal/mol (8212.1259 without restraints) Performing minimization step: 2792. Total energy = 8219.2558 kcal/mol (8209.7163 without restraints) Performing minimization step: 2793. Total energy = 8216.8468 kcal/mol (8207.3082 without restraints) Performing minimization step: 2794. Total energy = 8214.4391 kcal/mol (8204.9014 without restraints) Performing minimization step: 2795. Total energy = 8212.0322 kcal/mol (8202.4954 without restraints) Performing minimization step: 2796. Total energy = 8209.6260 kcal/mol (8200.0901 without restraints) Performing minimization step: 2797. Total energy = 8207.2212 kcal/mol (8197.6862 without restraints) Performing minimization step: 2798. Total energy = 8204.8177 kcal/mol (8195.2836 without restraints) Performing minimization step: 2799. Total energy = 8202.4152 kcal/mol (8192.8820 without restraints) Performing minimization step: 2800. Total energy = 8200.0140 kcal/mol (8190.4817 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 8197.6136 kcal/mol (8188.0821 without restraints) Performing minimization step: 2802. Total energy = 8195.2143 kcal/mol (8185.6838 without restraints) Performing minimization step: 2803. Total energy = 8192.8165 kcal/mol (8183.2870 without restraints) Performing minimization step: 2804. Total energy = 8190.4194 kcal/mol (8180.8908 without restraints) Performing minimization step: 2805. Total energy = 8188.0241 kcal/mol (8178.4964 without restraints) Performing minimization step: 2806. Total energy = 8185.6297 kcal/mol (8176.1031 without restraints) Performing minimization step: 2807. Total energy = 8183.2365 kcal/mol (8173.7106 without restraints) Performing minimization step: 2808. Total energy = 8180.8447 kcal/mol (8171.3198 without restraints) Performing minimization step: 2809. Total energy = 8178.4536 kcal/mol (8168.9295 without restraints) Performing minimization step: 2810. Total energy = 8176.0636 kcal/mol (8166.5404 without restraints) Performing minimization step: 2811. Total energy = 8173.6745 kcal/mol (8164.1523 without restraints) Performing minimization step: 2812. Total energy = 8171.2868 kcal/mol (8161.7655 without restraints) Performing minimization step: 2813. Total energy = 8168.9004 kcal/mol (8159.3800 without restraints) Performing minimization step: 2814. Total energy = 8166.5152 kcal/mol (8156.9957 without restraints) Performing minimization step: 2815. Total energy = 8164.1311 kcal/mol (8154.6126 without restraints) Performing minimization step: 2816. Total energy = 8161.7484 kcal/mol (8152.2308 without restraints) Performing minimization step: 2817. Total energy = 8159.3667 kcal/mol (8149.8501 without restraints) Performing minimization step: 2818. Total energy = 8156.9861 kcal/mol (8147.4703 without restraints) Performing minimization step: 2819. Total energy = 8154.6065 kcal/mol (8145.0916 without restraints) Performing minimization step: 2820. Total energy = 8152.2281 kcal/mol (8142.7142 without restraints) Performing minimization step: 2821. Total energy = 8149.8510 kcal/mol (8140.3380 without restraints) Performing minimization step: 2822. Total energy = 8147.4751 kcal/mol (8137.9630 without restraints) Performing minimization step: 2823. Total energy = 8145.1005 kcal/mol (8135.5894 without restraints) Performing minimization step: 2824. Total energy = 8142.7272 kcal/mol (8133.2169 without restraints) Performing minimization step: 2825. Total energy = 8140.3542 kcal/mol (8130.8449 without restraints) Performing minimization step: 2826. Total energy = 8137.9832 kcal/mol (8128.4748 without restraints) Performing minimization step: 2827. Total energy = 8135.6131 kcal/mol (8126.1056 without restraints) Performing minimization step: 2828. Total energy = 8133.2445 kcal/mol (8123.7380 without restraints) Performing minimization step: 2829. Total energy = 8130.8770 kcal/mol (8121.3714 without restraints) Performing minimization step: 2830. Total energy = 8128.5105 kcal/mol (8119.0059 without restraints) Performing minimization step: 2831. Total energy = 8126.1453 kcal/mol (8116.6416 without restraints) Performing minimization step: 2832. Total energy = 8123.7812 kcal/mol (8114.2783 without restraints) Performing minimization step: 2833. Total energy = 8121.4183 kcal/mol (8111.9164 without restraints) Performing minimization step: 2834. Total energy = 8119.0565 kcal/mol (8109.5556 without restraints) Performing minimization step: 2835. Total energy = 8116.6962 kcal/mol (8107.1962 without restraints) Performing minimization step: 2836. Total energy = 8114.3367 kcal/mol (8104.8376 without restraints) Performing minimization step: 2837. Total energy = 8111.9789 kcal/mol (8102.4808 without restraints) Performing minimization step: 2838. Total energy = 8109.6221 kcal/mol (8100.1249 without restraints) Performing minimization step: 2839. Total energy = 8107.2667 kcal/mol (8097.7704 without restraints) Performing minimization step: 2840. Total energy = 8104.9129 kcal/mol (8095.4177 without restraints) Performing minimization step: 2841. Total energy = 8102.5598 kcal/mol (8093.0654 without restraints) Performing minimization step: 2842. Total energy = 8100.2083 kcal/mol (8090.7151 without restraints) Performing minimization step: 2843. Total energy = 8097.8577 kcal/mol (8088.3651 without restraints) Performing minimization step: 2844. Total energy = 8095.5085 kcal/mol (8086.0168 without restraints) Performing minimization step: 2845. Total energy = 8093.1610 kcal/mol (8083.6704 without restraints) Performing minimization step: 2846. Total energy = 8090.8143 kcal/mol (8081.3246 without restraints) Performing minimization step: 2847. Total energy = 8088.4689 kcal/mol (8078.9801 without restraints) Performing minimization step: 2848. Total energy = 8086.1247 kcal/mol (8076.6369 without restraints) Performing minimization step: 2849. Total energy = 8083.7821 kcal/mol (8074.2954 without restraints) Performing minimization step: 2850. Total energy = 8081.4405 kcal/mol (8071.9546 without restraints) Performing minimization step: 2851. Total energy = 8079.1001 kcal/mol (8069.6150 without restraints) Performing minimization step: 2852. Total energy = 8076.7610 kcal/mol (8067.2769 without restraints) Performing minimization step: 2853. Total energy = 8074.4229 kcal/mol (8064.9397 without restraints) Performing minimization step: 2854. Total energy = 8072.0864 kcal/mol (8062.6042 without restraints) Performing minimization step: 2855. Total energy = 8069.7509 kcal/mol (8060.2696 without restraints) Performing minimization step: 2856. Total energy = 8067.4169 kcal/mol (8057.9365 without restraints) Performing minimization step: 2857. Total energy = 8065.0837 kcal/mol (8055.6043 without restraints) Performing minimization step: 2858. Total energy = 8062.7517 kcal/mol (8053.2733 without restraints) Performing minimization step: 2859. Total energy = 8060.4215 kcal/mol (8050.9440 without restraints) Performing minimization step: 2860. Total energy = 8058.0928 kcal/mol (8048.6163 without restraints) Performing minimization step: 2861. Total energy = 8055.7656 kcal/mol (8046.2902 without restraints) Performing minimization step: 2862. Total energy = 8053.4393 kcal/mol (8043.9646 without restraints) Performing minimization step: 2863. Total energy = 8051.1148 kcal/mol (8041.6411 without restraints) Performing minimization step: 2864. Total energy = 8048.7912 kcal/mol (8039.3185 without restraints) Performing minimization step: 2865. Total energy = 8046.4688 kcal/mol (8036.9970 without restraints) Performing minimization step: 2866. Total energy = 8044.1475 kcal/mol (8034.6766 without restraints) Performing minimization step: 2867. Total energy = 8041.8275 kcal/mol (8032.3576 without restraints) Performing minimization step: 2868. Total energy = 8039.5088 kcal/mol (8030.0398 without restraints) Performing minimization step: 2869. Total energy = 8037.1913 kcal/mol (8027.7233 without restraints) Performing minimization step: 2870. Total energy = 8034.8758 kcal/mol (8025.4087 without restraints) Performing minimization step: 2871. Total energy = 8032.5613 kcal/mol (8023.0952 without restraints) Performing minimization step: 2872. Total energy = 8030.2481 kcal/mol (8020.7829 without restraints) Performing minimization step: 2873. Total energy = 8027.9361 kcal/mol (8018.4719 without restraints) Performing minimization step: 2874. Total energy = 8025.6256 kcal/mol (8016.1623 without restraints) Performing minimization step: 2875. Total energy = 8023.3163 kcal/mol (8013.8540 without restraints) Performing minimization step: 2876. Total energy = 8021.0087 kcal/mol (8011.5474 without restraints) Performing minimization step: 2877. Total energy = 8018.7022 kcal/mol (8009.2418 without restraints) Performing minimization step: 2878. Total energy = 8016.3969 kcal/mol (8006.9375 without restraints) Performing minimization step: 2879. Total energy = 8014.0930 kcal/mol (8004.6345 without restraints) Performing minimization step: 2880. Total energy = 8011.7910 kcal/mol (8002.3335 without restraints) Performing minimization step: 2881. Total energy = 8009.4902 kcal/mol (8000.0336 without restraints) Performing minimization step: 2882. Total energy = 8007.1903 kcal/mol (7997.7348 without restraints) Performing minimization step: 2883. Total energy = 8004.8918 kcal/mol (7995.4372 without restraints) Performing minimization step: 2884. Total energy = 8002.5949 kcal/mol (7993.1412 without restraints) Performing minimization step: 2885. Total energy = 8000.2989 kcal/mol (7990.8461 without restraints) Performing minimization step: 2886. Total energy = 7998.0044 kcal/mol (7988.5527 without restraints) Performing minimization step: 2887. Total energy = 7995.7116 kcal/mol (7986.2608 without restraints) Performing minimization step: 2888. Total energy = 7993.4198 kcal/mol (7983.9700 without restraints) Performing minimization step: 2889. Total energy = 7991.1292 kcal/mol (7981.6804 without restraints) Performing minimization step: 2890. Total energy = 7988.8404 kcal/mol (7979.3928 without restraints) Performing minimization step: 2891. Total energy = 7986.5534 kcal/mol (7977.1065 without restraints) Performing minimization step: 2892. Total energy = 7984.2673 kcal/mol (7974.8214 without restraints) Performing minimization step: 2893. Total energy = 7981.9826 kcal/mol (7972.5379 without restraints) Performing minimization step: 2894. Total energy = 7979.6994 kcal/mol (7970.2555 without restraints) Performing minimization step: 2895. Total energy = 7977.4172 kcal/mol (7967.9742 without restraints) Performing minimization step: 2896. Total energy = 7975.1365 kcal/mol (7965.6944 without restraints) Performing minimization step: 2897. Total energy = 7972.8573 kcal/mol (7963.4162 without restraints) Performing minimization step: 2898. Total energy = 7970.5794 kcal/mol (7961.1392 without restraints) Performing minimization step: 2899. Total energy = 7968.3026 kcal/mol (7958.8635 without restraints) Performing minimization step: 2900. Total energy = 7966.0273 kcal/mol (7956.5891 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 7963.7536 kcal/mol (7954.3163 without restraints) Performing minimization step: 2902. Total energy = 7961.4812 kcal/mol (7952.0449 without restraints) Performing minimization step: 2903. Total energy = 7959.2104 kcal/mol (7949.7753 without restraints) Performing minimization step: 2904. Total energy = 7956.9413 kcal/mol (7947.5070 without restraints) Performing minimization step: 2905. Total energy = 7954.6733 kcal/mol (7945.2400 without restraints) Performing minimization step: 2906. Total energy = 7952.4065 kcal/mol (7942.9741 without restraints) Performing minimization step: 2907. Total energy = 7950.1409 kcal/mol (7940.7094 without restraints) Performing minimization step: 2908. Total energy = 7947.8769 kcal/mol (7938.4464 without restraints) Performing minimization step: 2909. Total energy = 7945.6145 kcal/mol (7936.1851 without restraints) Performing minimization step: 2910. Total energy = 7943.3534 kcal/mol (7933.9250 without restraints) Performing minimization step: 2911. Total energy = 7941.0936 kcal/mol (7931.6659 without restraints) Performing minimization step: 2912. Total energy = 7938.8354 kcal/mol (7929.4089 without restraints) Performing minimization step: 2913. Total energy = 7936.5785 kcal/mol (7927.1530 without restraints) Performing minimization step: 2914. Total energy = 7934.3231 kcal/mol (7924.8986 without restraints) Performing minimization step: 2915. Total energy = 7932.0692 kcal/mol (7922.6455 without restraints) Performing minimization step: 2916. Total energy = 7929.8165 kcal/mol (7920.3940 without restraints) Performing minimization step: 2917. Total energy = 7927.5654 kcal/mol (7918.1438 without restraints) Performing minimization step: 2918. Total energy = 7925.3159 kcal/mol (7915.8953 without restraints) Performing minimization step: 2919. Total energy = 7923.0678 kcal/mol (7913.6482 without restraints) Performing minimization step: 2920. Total energy = 7920.8210 kcal/mol (7911.4023 without restraints) Performing minimization step: 2921. Total energy = 7918.5756 kcal/mol (7909.1579 without restraints) Performing minimization step: 2922. Total energy = 7916.3317 kcal/mol (7906.9150 without restraints) Performing minimization step: 2923. Total energy = 7914.0890 kcal/mol (7904.6732 without restraints) Performing minimization step: 2924. Total energy = 7911.8481 kcal/mol (7902.4334 without restraints) Performing minimization step: 2925. Total energy = 7909.6087 kcal/mol (7900.1950 without restraints) Performing minimization step: 2926. Total energy = 7907.3709 kcal/mol (7897.9582 without restraints) Performing minimization step: 2927. Total energy = 7905.1345 kcal/mol (7895.7227 without restraints) Performing minimization step: 2928. Total energy = 7902.8994 kcal/mol (7893.4886 without restraints) Performing minimization step: 2929. Total energy = 7900.6660 kcal/mol (7891.2562 without restraints) Performing minimization step: 2930. Total energy = 7898.4334 kcal/mol (7889.0246 without restraints) Performing minimization step: 2931. Total energy = 7896.2025 kcal/mol (7886.7947 without restraints) Performing minimization step: 2932. Total energy = 7893.9736 kcal/mol (7884.5668 without restraints) Performing minimization step: 2933. Total energy = 7891.7457 kcal/mol (7882.3399 without restraints) Performing minimization step: 2934. Total energy = 7889.5194 kcal/mol (7880.1146 without restraints) Performing minimization step: 2935. Total energy = 7887.2945 kcal/mol (7877.8907 without restraints) Performing minimization step: 2936. Total energy = 7885.0708 kcal/mol (7875.6679 without restraints) Performing minimization step: 2937. Total energy = 7882.8492 kcal/mol (7873.4474 without restraints) Performing minimization step: 2938. Total energy = 7880.6289 kcal/mol (7871.2281 without restraints) Performing minimization step: 2939. Total energy = 7878.4100 kcal/mol (7869.0101 without restraints) Performing minimization step: 2940. Total energy = 7876.1925 kcal/mol (7866.7936 without restraints) Performing minimization step: 2941. Total energy = 7873.9765 kcal/mol (7864.5787 without restraints) Performing minimization step: 2942. Total energy = 7871.7620 kcal/mol (7862.3651 without restraints) Performing minimization step: 2943. Total energy = 7869.5490 kcal/mol (7860.1531 without restraints) Performing minimization step: 2944. Total energy = 7867.3375 kcal/mol (7857.9426 without restraints) Performing minimization step: 2945. Total energy = 7865.1274 kcal/mol (7855.7336 without restraints) Performing minimization step: 2946. Total energy = 7862.9189 kcal/mol (7853.5261 without restraints) Performing minimization step: 2947. Total energy = 7860.7121 kcal/mol (7851.3202 without restraints) Performing minimization step: 2948. Total energy = 7858.5064 kcal/mol (7849.1154 without restraints) Performing minimization step: 2949. Total energy = 7856.3024 kcal/mol (7846.9126 without restraints) Performing minimization step: 2950. Total energy = 7854.0996 kcal/mol (7844.7107 without restraints) Performing minimization step: 2951. Total energy = 7851.8985 kcal/mol (7842.5106 without restraints) Performing minimization step: 2952. Total energy = 7849.6991 kcal/mol (7840.3123 without restraints) Performing minimization step: 2953. Total energy = 7847.5008 kcal/mol (7838.1149 without restraints) Performing minimization step: 2954. Total energy = 7845.3043 kcal/mol (7835.9194 without restraints) Performing minimization step: 2955. Total energy = 7843.1096 kcal/mol (7833.7259 without restraints) Performing minimization step: 2956. Total energy = 7840.9163 kcal/mol (7831.5335 without restraints) Performing minimization step: 2957. Total energy = 7838.7244 kcal/mol (7829.3426 without restraints) Performing minimization step: 2958. Total energy = 7836.5342 kcal/mol (7827.1535 without restraints) Performing minimization step: 2959. Total energy = 7834.3454 kcal/mol (7824.9654 without restraints) Performing minimization step: 2960. Total energy = 7832.1586 kcal/mol (7822.7799 without restraints) Performing minimization step: 2961. Total energy = 7829.9732 kcal/mol (7820.5954 without restraints) Performing minimization step: 2962. Total energy = 7827.7890 kcal/mol (7818.4122 without restraints) Performing minimization step: 2963. Total energy = 7825.6061 kcal/mol (7816.2304 without restraints) Performing minimization step: 2964. Total energy = 7823.4250 kcal/mol (7814.0502 without restraints) Performing minimization step: 2965. Total energy = 7821.2453 kcal/mol (7811.8716 without restraints) Performing minimization step: 2966. Total energy = 7819.0674 kcal/mol (7809.6947 without restraints) Performing minimization step: 2967. Total energy = 7816.8909 kcal/mol (7807.5192 without restraints) Performing minimization step: 2968. Total energy = 7814.7162 kcal/mol (7805.3455 without restraints) Performing minimization step: 2969. Total energy = 7812.5425 kcal/mol (7803.1728 without restraints) Performing minimization step: 2970. Total energy = 7810.3706 kcal/mol (7801.0019 without restraints) Performing minimization step: 2971. Total energy = 7808.2003 kcal/mol (7798.8326 without restraints) Performing minimization step: 2972. Total energy = 7806.0317 kcal/mol (7796.6650 without restraints) Performing minimization step: 2973. Total energy = 7803.8645 kcal/mol (7794.4990 without restraints) Performing minimization step: 2974. Total energy = 7801.6993 kcal/mol (7792.3347 without restraints) Performing minimization step: 2975. Total energy = 7799.5353 kcal/mol (7790.1718 without restraints) Performing minimization step: 2976. Total energy = 7797.3729 kcal/mol (7788.0105 without restraints) Performing minimization step: 2977. Total energy = 7795.2121 kcal/mol (7785.8505 without restraints) Performing minimization step: 2978. Total energy = 7793.0526 kcal/mol (7783.6921 without restraints) Performing minimization step: 2979. Total energy = 7790.8948 kcal/mol (7781.5353 without restraints) Performing minimization step: 2980. Total energy = 7788.7387 kcal/mol (7779.3802 without restraints) Performing minimization step: 2981. Total energy = 7786.5839 kcal/mol (7777.2265 without restraints) Performing minimization step: 2982. Total energy = 7784.4306 kcal/mol (7775.0742 without restraints) Performing minimization step: 2983. Total energy = 7782.2791 kcal/mol (7772.9236 without restraints) Performing minimization step: 2984. Total energy = 7780.1290 kcal/mol (7770.7746 without restraints) Performing minimization step: 2985. Total energy = 7777.9811 kcal/mol (7768.6277 without restraints) Performing minimization step: 2986. Total energy = 7775.8335 kcal/mol (7766.4812 without restraints) Performing minimization step: 2987. Total energy = 7773.6884 kcal/mol (7764.3371 without restraints) Performing minimization step: 2988. Total energy = 7771.5447 kcal/mol (7762.1944 without restraints) Performing minimization step: 2989. Total energy = 7769.4026 kcal/mol (7760.0531 without restraints) Performing minimization step: 2990. Total energy = 7767.2618 kcal/mol (7757.9135 without restraints) Performing minimization step: 2991. Total energy = 7765.1229 kcal/mol (7755.7756 without restraints) Performing minimization step: 2992. Total energy = 7762.9855 kcal/mol (7753.6393 without restraints) Performing minimization step: 2993. Total energy = 7760.8499 kcal/mol (7751.5048 without restraints) Performing minimization step: 2994. Total energy = 7758.7162 kcal/mol (7749.3722 without restraints) Performing minimization step: 2995. Total energy = 7756.5838 kcal/mol (7747.2407 without restraints) Performing minimization step: 2996. Total energy = 7754.4528 kcal/mol (7745.1108 without restraints) Performing minimization step: 2997. Total energy = 7752.3237 kcal/mol (7742.9827 without restraints) Performing minimization step: 2998. Total energy = 7750.1962 kcal/mol (7740.8562 without restraints) Performing minimization step: 2999. Total energy = 7748.0703 kcal/mol (7738.7313 without restraints) Performing minimization step: 3000. Total energy = 7745.9456 kcal/mol (7736.6077 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 7743.8228 kcal/mol (7734.4860 without restraints) Performing minimization step: 3002. Total energy = 7741.7015 kcal/mol (7732.3656 without restraints) Performing minimization step: 3003. Total energy = 7739.5818 kcal/mol (7730.2470 without restraints) Performing minimization step: 3004. Total energy = 7737.4637 kcal/mol (7728.1299 without restraints) Performing minimization step: 3005. Total energy = 7735.3474 kcal/mol (7726.0146 without restraints) Performing minimization step: 3006. Total energy = 7733.2322 kcal/mol (7723.9004 without restraints) Performing minimization step: 3007. Total energy = 7731.1192 kcal/mol (7721.7886 without restraints) Performing minimization step: 3008. Total energy = 7729.0078 kcal/mol (7719.6782 without restraints) Performing minimization step: 3009. Total energy = 7726.8976 kcal/mol (7717.5691 without restraints) Performing minimization step: 3010. Total energy = 7724.7893 kcal/mol (7715.4617 without restraints) Performing minimization step: 3011. Total energy = 7722.6834 kcal/mol (7713.3569 without restraints) Performing minimization step: 3012. Total energy = 7720.5782 kcal/mol (7711.2526 without restraints) Performing minimization step: 3013. Total energy = 7718.4745 kcal/mol (7709.1499 without restraints) Performing minimization step: 3014. Total energy = 7716.3724 kcal/mol (7707.0490 without restraints) Performing minimization step: 3015. Total energy = 7714.2725 kcal/mol (7704.9501 without restraints) Performing minimization step: 3016. Total energy = 7712.1736 kcal/mol (7702.8523 without restraints) Performing minimization step: 3017. Total energy = 7710.0764 kcal/mol (7700.7561 without restraints) Performing minimization step: 3018. Total energy = 7707.9802 kcal/mol (7698.6609 without restraints) Performing minimization step: 3019. Total energy = 7705.8863 kcal/mol (7696.5681 without restraints) Performing minimization step: 3020. Total energy = 7703.7941 kcal/mol (7694.4770 without restraints) Performing minimization step: 3021. Total energy = 7701.7037 kcal/mol (7692.3877 without restraints) Performing minimization step: 3022. Total energy = 7699.6148 kcal/mol (7690.2998 without restraints) Performing minimization step: 3023. Total energy = 7697.5273 kcal/mol (7688.2134 without restraints) Performing minimization step: 3024. Total energy = 7695.4421 kcal/mol (7686.1292 without restraints) Performing minimization step: 3025. Total energy = 7693.3576 kcal/mol (7684.0458 without restraints) Performing minimization step: 3026. Total energy = 7691.2752 kcal/mol (7681.9644 without restraints) Performing minimization step: 3027. Total energy = 7689.1945 kcal/mol (7679.8847 without restraints) Performing minimization step: 3028. Total energy = 7687.1155 kcal/mol (7677.8068 without restraints) Performing minimization step: 3029. Total energy = 7685.0385 kcal/mol (7675.7308 without restraints) Performing minimization step: 3030. Total energy = 7682.9627 kcal/mol (7673.6560 without restraints) Performing minimization step: 3031. Total energy = 7680.8884 kcal/mol (7671.5828 without restraints) Performing minimization step: 3032. Total energy = 7678.8159 kcal/mol (7669.5114 without restraints) Performing minimization step: 3033. Total energy = 7676.7453 kcal/mol (7667.4418 without restraints) Performing minimization step: 3034. Total energy = 7674.6760 kcal/mol (7665.3736 without restraints) Performing minimization step: 3035. Total energy = 7672.6088 kcal/mol (7663.3076 without restraints) Performing minimization step: 3036. Total energy = 7670.5435 kcal/mol (7661.2432 without restraints) Performing minimization step: 3037. Total energy = 7668.4792 kcal/mol (7659.1799 without restraints) Performing minimization step: 3038. Total energy = 7666.4168 kcal/mol (7657.1186 without restraints) Performing minimization step: 3039. Total energy = 7664.3557 kcal/mol (7655.0587 without restraints) Performing minimization step: 3040. Total energy = 7662.2967 kcal/mol (7653.0006 without restraints) Performing minimization step: 3041. Total energy = 7660.2391 kcal/mol (7650.9441 without restraints) Performing minimization step: 3042. Total energy = 7658.1831 kcal/mol (7648.8892 without restraints) Performing minimization step: 3043. Total energy = 7656.1288 kcal/mol (7646.8359 without restraints) Performing minimization step: 3044. Total energy = 7654.0761 kcal/mol (7644.7843 without restraints) Performing minimization step: 3045. Total energy = 7652.0249 kcal/mol (7642.7340 without restraints) Performing minimization step: 3046. Total energy = 7649.9753 kcal/mol (7640.6856 without restraints) Performing minimization step: 3047. Total energy = 7647.9278 kcal/mol (7638.6392 without restraints) Performing minimization step: 3048. Total energy = 7645.8820 kcal/mol (7636.5944 without restraints) Performing minimization step: 3049. Total energy = 7643.8379 kcal/mol (7634.5514 without restraints) Performing minimization step: 3050. Total energy = 7641.7955 kcal/mol (7632.5100 without restraints) Performing minimization step: 3051. Total energy = 7639.7553 kcal/mol (7630.4711 without restraints) Performing minimization step: 3052. Total energy = 7637.7160 kcal/mol (7628.4326 without restraints) Performing minimization step: 3053. Total energy = 7635.6782 kcal/mol (7626.3959 without restraints) Performing minimization step: 3054. Total energy = 7633.6421 kcal/mol (7624.3610 without restraints) Performing minimization step: 3055. Total energy = 7631.6080 kcal/mol (7622.3279 without restraints) Performing minimization step: 3056. Total energy = 7629.5757 kcal/mol (7620.2966 without restraints) Performing minimization step: 3057. Total energy = 7627.5449 kcal/mol (7618.2669 without restraints) Performing minimization step: 3058. Total energy = 7625.5157 kcal/mol (7616.2388 without restraints) Performing minimization step: 3059. Total energy = 7623.4883 kcal/mol (7614.2125 without restraints) Performing minimization step: 3060. Total energy = 7621.4624 kcal/mol (7612.1876 without restraints) Performing minimization step: 3061. Total energy = 7619.4380 kcal/mol (7610.1643 without restraints) Performing minimization step: 3062. Total energy = 7617.4155 kcal/mol (7608.1428 without restraints) Performing minimization step: 3063. Total energy = 7615.3947 kcal/mol (7606.1233 without restraints) Performing minimization step: 3064. Total energy = 7613.3757 kcal/mol (7604.1052 without restraints) Performing minimization step: 3065. Total energy = 7611.3584 kcal/mol (7602.0890 without restraints) Performing minimization step: 3066. Total energy = 7609.3428 kcal/mol (7600.0745 without restraints) Performing minimization step: 3067. Total energy = 7607.3285 kcal/mol (7598.0612 without restraints) Performing minimization step: 3068. Total energy = 7605.3160 kcal/mol (7596.0498 without restraints) Performing minimization step: 3069. Total energy = 7603.3053 kcal/mol (7594.0402 without restraints) Performing minimization step: 3070. Total energy = 7601.2969 kcal/mol (7592.0329 without restraints) Performing minimization step: 3071. Total energy = 7599.2899 kcal/mol (7590.0272 without restraints) Performing minimization step: 3072. Total energy = 7597.2851 kcal/mol (7588.0233 without restraints) Performing minimization step: 3073. Total energy = 7595.2812 kcal/mol (7586.0204 without restraints) Performing minimization step: 3074. Total energy = 7593.2789 kcal/mol (7584.0192 without restraints) Performing minimization step: 3075. Total energy = 7591.2783 kcal/mol (7582.0197 without restraints) Performing minimization step: 3076. Total energy = 7589.2793 kcal/mol (7580.0217 without restraints) Performing minimization step: 3077. Total energy = 7587.2819 kcal/mol (7578.0254 without restraints) Performing minimization step: 3078. Total energy = 7585.2864 kcal/mol (7576.0310 without restraints) Performing minimization step: 3079. Total energy = 7583.2923 kcal/mol (7574.0380 without restraints) Performing minimization step: 3080. Total energy = 7581.3002 kcal/mol (7572.0471 without restraints) Performing minimization step: 3081. Total energy = 7579.3098 kcal/mol (7570.0577 without restraints) Performing minimization step: 3082. Total energy = 7577.3211 kcal/mol (7568.0702 without restraints) Performing minimization step: 3083. Total energy = 7575.3345 kcal/mol (7566.0845 without restraints) Performing minimization step: 3084. Total energy = 7573.3492 kcal/mol (7564.1003 without restraints) Performing minimization step: 3085. Total energy = 7571.3654 kcal/mol (7562.1175 without restraints) Performing minimization step: 3086. Total energy = 7569.3833 kcal/mol (7560.1366 without restraints) Performing minimization step: 3087. Total energy = 7567.4036 kcal/mol (7558.1579 without restraints) Performing minimization step: 3088. Total energy = 7565.4252 kcal/mol (7556.1806 without restraints) Performing minimization step: 3089. Total energy = 7563.4483 kcal/mol (7554.2048 without restraints) Performing minimization step: 3090. Total energy = 7561.4735 kcal/mol (7552.2312 without restraints) Performing minimization step: 3091. Total energy = 7559.4999 kcal/mol (7550.2585 without restraints) Performing minimization step: 3092. Total energy = 7557.5280 kcal/mol (7548.2878 without restraints) Performing minimization step: 3093. Total energy = 7555.5585 kcal/mol (7546.3194 without restraints) Performing minimization step: 3094. Total energy = 7553.5902 kcal/mol (7544.3523 without restraints) Performing minimization step: 3095. Total energy = 7551.6235 kcal/mol (7542.3866 without restraints) Performing minimization step: 3096. Total energy = 7549.6586 kcal/mol (7540.4227 without restraints) Performing minimization step: 3097. Total energy = 7547.6950 kcal/mol (7538.4602 without restraints) Performing minimization step: 3098. Total energy = 7545.7336 kcal/mol (7536.5000 without restraints) Performing minimization step: 3099. Total energy = 7543.7738 kcal/mol (7534.5413 without restraints) Performing minimization step: 3100. Total energy = 7541.8156 kcal/mol (7532.5840 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 7539.8590 kcal/mol (7530.6286 without restraints) Performing minimization step: 3102. Total energy = 7537.9043 kcal/mol (7528.6750 without restraints) Performing minimization step: 3103. Total energy = 7535.9512 kcal/mol (7526.7230 without restraints) Performing minimization step: 3104. Total energy = 7533.9998 kcal/mol (7524.7726 without restraints) Performing minimization step: 3105. Total energy = 7532.0505 kcal/mol (7522.8245 without restraints) Performing minimization step: 3106. Total energy = 7530.1029 kcal/mol (7520.8779 without restraints) Performing minimization step: 3107. Total energy = 7528.1567 kcal/mol (7518.9328 without restraints) Performing minimization step: 3108. Total energy = 7526.2121 kcal/mol (7516.9894 without restraints) Performing minimization step: 3109. Total energy = 7524.2699 kcal/mol (7515.0483 without restraints) Performing minimization step: 3110. Total energy = 7522.3288 kcal/mol (7513.1083 without restraints) Performing minimization step: 3111. Total energy = 7520.3894 kcal/mol (7511.1699 without restraints) Performing minimization step: 3112. Total energy = 7518.4517 kcal/mol (7509.2335 without restraints) Performing minimization step: 3113. Total energy = 7516.5157 kcal/mol (7507.2985 without restraints) Performing minimization step: 3114. Total energy = 7514.5817 kcal/mol (7505.3656 without restraints) Performing minimization step: 3115. Total energy = 7512.6499 kcal/mol (7503.4350 without restraints) Performing minimization step: 3116. Total energy = 7510.7194 kcal/mol (7501.5055 without restraints) Performing minimization step: 3117. Total energy = 7508.7903 kcal/mol (7499.5774 without restraints) Performing minimization step: 3118. Total energy = 7506.8630 kcal/mol (7497.6514 without restraints) Performing minimization step: 3119. Total energy = 7504.9376 kcal/mol (7495.7270 without restraints) Performing minimization step: 3120. Total energy = 7503.0137 kcal/mol (7493.8043 without restraints) Performing minimization step: 3121. Total energy = 7501.0915 kcal/mol (7491.8831 without restraints) Performing minimization step: 3122. Total energy = 7499.1709 kcal/mol (7489.9636 without restraints) Performing minimization step: 3123. Total energy = 7497.2523 kcal/mol (7488.0461 without restraints) Performing minimization step: 3124. Total energy = 7495.3355 kcal/mol (7486.1305 without restraints) Performing minimization step: 3125. Total energy = 7493.4206 kcal/mol (7484.2166 without restraints) Performing minimization step: 3126. Total energy = 7491.5067 kcal/mol (7482.3038 without restraints) Performing minimization step: 3127. Total energy = 7489.5948 kcal/mol (7480.3931 without restraints) Performing minimization step: 3128. Total energy = 7487.6849 kcal/mol (7478.4843 without restraints) Performing minimization step: 3129. Total energy = 7485.7766 kcal/mol (7476.5771 without restraints) Performing minimization step: 3130. Total energy = 7483.8700 kcal/mol (7474.6716 without restraints) Performing minimization step: 3131. Total energy = 7481.9650 kcal/mol (7472.7677 without restraints) Performing minimization step: 3132. Total energy = 7480.0615 kcal/mol (7470.8654 without restraints) Performing minimization step: 3133. Total energy = 7478.1607 kcal/mol (7468.9657 without restraints) Performing minimization step: 3134. Total energy = 7476.2610 kcal/mol (7467.0671 without restraints) Performing minimization step: 3135. Total energy = 7474.3628 kcal/mol (7465.1699 without restraints) Performing minimization step: 3136. Total energy = 7472.4662 kcal/mol (7463.2745 without restraints) Performing minimization step: 3137. Total energy = 7470.5715 kcal/mol (7461.3809 without restraints) Performing minimization step: 3138. Total energy = 7468.6785 kcal/mol (7459.4892 without restraints) Performing minimization step: 3139. Total energy = 7466.7875 kcal/mol (7457.5992 without restraints) Performing minimization step: 3140. Total energy = 7464.8979 kcal/mol (7455.7107 without restraints) Performing minimization step: 3141. Total energy = 7463.0100 kcal/mol (7453.8239 without restraints) Performing minimization step: 3142. Total energy = 7461.1237 kcal/mol (7451.9387 without restraints) Performing minimization step: 3143. Total energy = 7459.2391 kcal/mol (7450.0550 without restraints) Performing minimization step: 3144. Total energy = 7457.3563 kcal/mol (7448.1735 without restraints) Performing minimization step: 3145. Total energy = 7455.4756 kcal/mol (7446.2940 without restraints) Performing minimization step: 3146. Total energy = 7453.5968 kcal/mol (7444.4163 without restraints) Performing minimization step: 3147. Total energy = 7451.7194 kcal/mol (7442.5400 without restraints) Performing minimization step: 3148. Total energy = 7449.8436 kcal/mol (7440.6652 without restraints) Performing minimization step: 3149. Total energy = 7447.9693 kcal/mol (7438.7921 without restraints) Performing minimization step: 3150. Total energy = 7446.0968 kcal/mol (7436.9208 without restraints) Performing minimization step: 3151. Total energy = 7444.2259 kcal/mol (7435.0510 without restraints) Performing minimization step: 3152. Total energy = 7442.3575 kcal/mol (7433.1837 without restraints) Performing minimization step: 3153. Total energy = 7440.4899 kcal/mol (7431.3172 without restraints) Performing minimization step: 3154. Total energy = 7438.6240 kcal/mol (7429.4524 without restraints) Performing minimization step: 3155. Total energy = 7436.7601 kcal/mol (7427.5897 without restraints) Performing minimization step: 3156. Total energy = 7434.8980 kcal/mol (7425.7287 without restraints) Performing minimization step: 3157. Total energy = 7433.0380 kcal/mol (7423.8700 without restraints) Performing minimization step: 3158. Total energy = 7431.1790 kcal/mol (7422.0119 without restraints) Performing minimization step: 3159. Total energy = 7429.3226 kcal/mol (7420.1567 without restraints) Performing minimization step: 3160. Total energy = 7427.4674 kcal/mol (7418.3026 without restraints) Performing minimization step: 3161. Total energy = 7425.6141 kcal/mol (7416.4504 without restraints) Performing minimization step: 3162. Total energy = 7423.7624 kcal/mol (7414.5998 without restraints) Performing minimization step: 3163. Total energy = 7421.9124 kcal/mol (7412.7511 without restraints) Performing minimization step: 3164. Total energy = 7420.0640 kcal/mol (7410.9036 without restraints) Performing minimization step: 3165. Total energy = 7418.2172 kcal/mol (7409.0580 without restraints) Performing minimization step: 3166. Total energy = 7416.3720 kcal/mol (7407.2139 without restraints) Performing minimization step: 3167. Total energy = 7414.5286 kcal/mol (7405.3717 without restraints) Performing minimization step: 3168. Total energy = 7412.6870 kcal/mol (7403.5312 without restraints) Performing minimization step: 3169. Total energy = 7410.8468 kcal/mol (7401.6921 without restraints) Performing minimization step: 3170. Total energy = 7409.0091 kcal/mol (7399.8555 without restraints) Performing minimization step: 3171. Total energy = 7407.1722 kcal/mol (7398.0198 without restraints) Performing minimization step: 3172. Total energy = 7405.3374 kcal/mol (7396.1862 without restraints) Performing minimization step: 3173. Total energy = 7403.5043 kcal/mol (7394.3542 without restraints) Performing minimization step: 3174. Total energy = 7401.6731 kcal/mol (7392.5242 without restraints) Performing minimization step: 3175. Total energy = 7399.8436 kcal/mol (7390.6958 without restraints) Performing minimization step: 3176. Total energy = 7398.0159 kcal/mol (7388.8692 without restraints) Performing minimization step: 3177. Total energy = 7396.1900 kcal/mol (7387.0444 without restraints) Performing minimization step: 3178. Total energy = 7394.3657 kcal/mol (7385.2212 without restraints) Performing minimization step: 3179. Total energy = 7392.5429 kcal/mol (7383.3996 without restraints) Performing minimization step: 3180. Total energy = 7390.7219 kcal/mol (7381.5797 without restraints) Performing minimization step: 3181. Total energy = 7388.9022 kcal/mol (7379.7612 without restraints) Performing minimization step: 3182. Total energy = 7387.0845 kcal/mol (7377.9446 without restraints) Performing minimization step: 3183. Total energy = 7385.2688 kcal/mol (7376.1300 without restraints) Performing minimization step: 3184. Total energy = 7383.4546 kcal/mol (7374.3170 without restraints) Performing minimization step: 3185. Total energy = 7381.6417 kcal/mol (7372.5052 without restraints) Performing minimization step: 3186. Total energy = 7379.8305 kcal/mol (7370.6952 without restraints) Performing minimization step: 3187. Total energy = 7378.0214 kcal/mol (7368.8872 without restraints) Performing minimization step: 3188. Total energy = 7376.2146 kcal/mol (7367.0816 without restraints) Performing minimization step: 3189. Total energy = 7374.4098 kcal/mol (7365.2779 without restraints) Performing minimization step: 3190. Total energy = 7372.6060 kcal/mol (7363.4752 without restraints) Performing minimization step: 3191. Total energy = 7370.8039 kcal/mol (7361.6743 without restraints) Performing minimization step: 3192. Total energy = 7369.0041 kcal/mol (7359.8756 without restraints) Performing minimization step: 3193. Total energy = 7367.2055 kcal/mol (7358.0782 without restraints) Performing minimization step: 3194. Total energy = 7365.4084 kcal/mol (7356.2822 without restraints) Performing minimization step: 3195. Total energy = 7363.6129 kcal/mol (7354.4879 without restraints) Performing minimization step: 3196. Total energy = 7361.8197 kcal/mol (7352.6959 without restraints) Performing minimization step: 3197. Total energy = 7360.0281 kcal/mol (7350.9053 without restraints) Performing minimization step: 3198. Total energy = 7358.2380 kcal/mol (7349.1164 without restraints) Performing minimization step: 3199. Total energy = 7356.4487 kcal/mol (7347.3283 without restraints) Performing minimization step: 3200. Total energy = 7354.6618 kcal/mol (7345.5425 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 7352.8765 kcal/mol (7343.7584 without restraints) Performing minimization step: 3202. Total energy = 7351.0931 kcal/mol (7341.9761 without restraints) Performing minimization step: 3203. Total energy = 7349.3115 kcal/mol (7340.1956 without restraints) Performing minimization step: 3204. Total energy = 7347.5315 kcal/mol (7338.4168 without restraints) Performing minimization step: 3205. Total energy = 7345.7536 kcal/mol (7336.6400 without restraints) Performing minimization step: 3206. Total energy = 7343.9771 kcal/mol (7334.8646 without restraints) Performing minimization step: 3207. Total energy = 7342.2021 kcal/mol (7333.0908 without restraints) Performing minimization step: 3208. Total energy = 7340.4295 kcal/mol (7331.3194 without restraints) Performing minimization step: 3209. Total energy = 7338.6578 kcal/mol (7329.5489 without restraints) Performing minimization step: 3210. Total energy = 7336.8879 kcal/mol (7327.7801 without restraints) Performing minimization step: 3211. Total energy = 7335.1198 kcal/mol (7326.0132 without restraints) Performing minimization step: 3212. Total energy = 7333.3535 kcal/mol (7324.2480 without restraints) Performing minimization step: 3213. Total energy = 7331.5886 kcal/mol (7322.4843 without restraints) Performing minimization step: 3214. Total energy = 7329.8256 kcal/mol (7320.7224 without restraints) Performing minimization step: 3215. Total energy = 7328.0642 kcal/mol (7318.9621 without restraints) Performing minimization step: 3216. Total energy = 7326.3044 kcal/mol (7317.2035 without restraints) Performing minimization step: 3217. Total energy = 7324.5464 kcal/mol (7315.4466 without restraints) Performing minimization step: 3218. Total energy = 7322.7900 kcal/mol (7313.6914 without restraints) Performing minimization step: 3219. Total energy = 7321.0354 kcal/mol (7311.9380 without restraints) Performing minimization step: 3220. Total energy = 7319.2824 kcal/mol (7310.1861 without restraints) Performing minimization step: 3221. Total energy = 7317.5313 kcal/mol (7308.4362 without restraints) Performing minimization step: 3222. Total energy = 7315.7814 kcal/mol (7306.6875 without restraints) Performing minimization step: 3223. Total energy = 7314.0335 kcal/mol (7304.9407 without restraints) Performing minimization step: 3224. Total energy = 7312.2874 kcal/mol (7303.1958 without restraints) Performing minimization step: 3225. Total energy = 7310.5428 kcal/mol (7301.4524 without restraints) Performing minimization step: 3226. Total energy = 7308.8001 kcal/mol (7299.7108 without restraints) Performing minimization step: 3227. Total energy = 7307.0591 kcal/mol (7297.9710 without restraints) Performing minimization step: 3228. Total energy = 7305.3198 kcal/mol (7296.2329 without restraints) Performing minimization step: 3229. Total energy = 7303.5820 kcal/mol (7294.4962 without restraints) Performing minimization step: 3230. Total energy = 7301.8461 kcal/mol (7292.7614 without restraints) Performing minimization step: 3231. Total energy = 7300.1116 kcal/mol (7291.0281 without restraints) Performing minimization step: 3232. Total energy = 7298.3786 kcal/mol (7289.2963 without restraints) Performing minimization step: 3233. Total energy = 7296.6480 kcal/mol (7287.5669 without restraints) Performing minimization step: 3234. Total energy = 7294.9190 kcal/mol (7285.8390 without restraints) Performing minimization step: 3235. Total energy = 7293.1912 kcal/mol (7284.1124 without restraints) Performing minimization step: 3236. Total energy = 7291.4652 kcal/mol (7282.3874 without restraints) Performing minimization step: 3237. Total energy = 7289.7406 kcal/mol (7280.6643 without restraints) Performing minimization step: 3238. Total energy = 7288.0180 kcal/mol (7278.9427 without restraints) Performing minimization step: 3239. Total energy = 7286.2969 kcal/mol (7277.2228 without restraints) Performing minimization step: 3240. Total energy = 7284.5775 kcal/mol (7275.5045 without restraints) Performing minimization step: 3241. Total energy = 7282.8595 kcal/mol (7273.7878 without restraints) Performing minimization step: 3242. Total energy = 7281.1437 kcal/mol (7272.0730 without restraints) Performing minimization step: 3243. Total energy = 7279.4291 kcal/mol (7270.3596 without restraints) Performing minimization step: 3244. Total energy = 7277.7164 kcal/mol (7268.6481 without restraints) Performing minimization step: 3245. Total energy = 7276.0053 kcal/mol (7266.9382 without restraints) Performing minimization step: 3246. Total energy = 7274.2957 kcal/mol (7265.2296 without restraints) Performing minimization step: 3247. Total energy = 7272.5879 kcal/mol (7263.5229 without restraints) Performing minimization step: 3248. Total energy = 7270.8825 kcal/mol (7261.8188 without restraints) Performing minimization step: 3249. Total energy = 7269.1786 kcal/mol (7260.1162 without restraints) Performing minimization step: 3250. Total energy = 7267.4761 kcal/mol (7258.4148 without restraints) Performing minimization step: 3251. Total energy = 7265.7751 kcal/mol (7256.7151 without restraints) Performing minimization step: 3252. Total energy = 7264.0760 kcal/mol (7255.0171 without restraints) Performing minimization step: 3253. Total energy = 7262.3774 kcal/mol (7253.3196 without restraints) Performing minimization step: 3254. Total energy = 7260.6814 kcal/mol (7251.6249 without restraints) Performing minimization step: 3255. Total energy = 7258.9870 kcal/mol (7249.9316 without restraints) Performing minimization step: 3256. Total energy = 7257.2944 kcal/mol (7248.2404 without restraints) Performing minimization step: 3257. Total energy = 7255.6033 kcal/mol (7246.5502 without restraints) Performing minimization step: 3258. Total energy = 7253.9137 kcal/mol (7244.8618 without restraints) Performing minimization step: 3259. Total energy = 7252.2258 kcal/mol (7243.1752 without restraints) Performing minimization step: 3260. Total energy = 7250.5402 kcal/mol (7241.4906 without restraints) Performing minimization step: 3261. Total energy = 7248.8556 kcal/mol (7239.8073 without restraints) Performing minimization step: 3262. Total energy = 7247.1737 kcal/mol (7238.1265 without restraints) Performing minimization step: 3263. Total energy = 7245.4927 kcal/mol (7236.4467 without restraints) Performing minimization step: 3264. Total energy = 7243.8138 kcal/mol (7234.7690 without restraints) Performing minimization step: 3265. Total energy = 7242.1357 kcal/mol (7233.0919 without restraints) Performing minimization step: 3266. Total energy = 7240.4590 kcal/mol (7231.4165 without restraints) Performing minimization step: 3267. Total energy = 7238.7843 kcal/mol (7229.7430 without restraints) Performing minimization step: 3268. Total energy = 7237.1116 kcal/mol (7228.0715 without restraints) Performing minimization step: 3269. Total energy = 7235.4405 kcal/mol (7226.4016 without restraints) Performing minimization step: 3270. Total energy = 7233.7708 kcal/mol (7224.7330 without restraints) Performing minimization step: 3271. Total energy = 7232.1029 kcal/mol (7223.0664 without restraints) Performing minimization step: 3272. Total energy = 7230.4366 kcal/mol (7221.4012 without restraints) Performing minimization step: 3273. Total energy = 7228.7718 kcal/mol (7219.7376 without restraints) Performing minimization step: 3274. Total energy = 7227.1085 kcal/mol (7218.0755 without restraints) Performing minimization step: 3275. Total energy = 7225.4469 kcal/mol (7216.4151 without restraints) Performing minimization step: 3276. Total energy = 7223.7865 kcal/mol (7214.7558 without restraints) Performing minimization step: 3277. Total energy = 7222.1282 kcal/mol (7213.0987 without restraints) Performing minimization step: 3278. Total energy = 7220.4715 kcal/mol (7211.4432 without restraints) Performing minimization step: 3279. Total energy = 7218.8167 kcal/mol (7209.7895 without restraints) Performing minimization step: 3280. Total energy = 7217.1632 kcal/mol (7208.1373 without restraints) Performing minimization step: 3281. Total energy = 7215.5112 kcal/mol (7206.4864 without restraints) Performing minimization step: 3282. Total energy = 7213.8612 kcal/mol (7204.8376 without restraints) Performing minimization step: 3283. Total energy = 7212.2125 kcal/mol (7203.1902 without restraints) Performing minimization step: 3284. Total energy = 7210.5658 kcal/mol (7201.5446 without restraints) Performing minimization step: 3285. Total energy = 7208.9202 kcal/mol (7199.9003 without restraints) Performing minimization step: 3286. Total energy = 7207.2770 kcal/mol (7198.2582 without restraints) Performing minimization step: 3287. Total energy = 7205.6352 kcal/mol (7196.6175 without restraints) Performing minimization step: 3288. Total energy = 7203.9949 kcal/mol (7194.9784 without restraints) Performing minimization step: 3289. Total energy = 7202.3562 kcal/mol (7193.3410 without restraints) Performing minimization step: 3290. Total energy = 7200.7189 kcal/mol (7191.7047 without restraints) Performing minimization step: 3291. Total energy = 7199.0830 kcal/mol (7190.0701 without restraints) Performing minimization step: 3292. Total energy = 7197.4489 kcal/mol (7188.4372 without restraints) Performing minimization step: 3293. Total energy = 7195.8164 kcal/mol (7186.8059 without restraints) Performing minimization step: 3294. Total energy = 7194.1856 kcal/mol (7185.1762 without restraints) Performing minimization step: 3295. Total energy = 7192.5563 kcal/mol (7183.5482 without restraints) Performing minimization step: 3296. Total energy = 7190.9288 kcal/mol (7181.9218 without restraints) Performing minimization step: 3297. Total energy = 7189.3025 kcal/mol (7180.2968 without restraints) Performing minimization step: 3298. Total energy = 7187.6777 kcal/mol (7178.6732 without restraints) Performing minimization step: 3299. Total energy = 7186.0554 kcal/mol (7177.0521 without restraints) Performing minimization step: 3300. Total energy = 7184.4343 kcal/mol (7175.4322 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 7182.8148 kcal/mol (7173.8138 without restraints) Performing minimization step: 3302. Total energy = 7181.1968 kcal/mol (7172.1971 without restraints) Performing minimization step: 3303. Total energy = 7179.5807 kcal/mol (7170.5821 without restraints) Performing minimization step: 3304. Total energy = 7177.9659 kcal/mol (7168.9686 without restraints) Performing minimization step: 3305. Total energy = 7176.3530 kcal/mol (7167.3570 without restraints) Performing minimization step: 3306. Total energy = 7174.7415 kcal/mol (7165.7465 without restraints) Performing minimization step: 3307. Total energy = 7173.1316 kcal/mol (7164.1378 without restraints) Performing minimization step: 3308. Total energy = 7171.5232 kcal/mol (7162.5306 without restraints) Performing minimization step: 3309. Total energy = 7169.9165 kcal/mol (7160.9251 without restraints) Performing minimization step: 3310. Total energy = 7168.3110 kcal/mol (7159.3209 without restraints) Performing minimization step: 3311. Total energy = 7166.7075 kcal/mol (7157.7184 without restraints) Performing minimization step: 3312. Total energy = 7165.1052 kcal/mol (7156.1174 without restraints) Performing minimization step: 3313. Total energy = 7163.5044 kcal/mol (7154.5178 without restraints) Performing minimization step: 3314. Total energy = 7161.9054 kcal/mol (7152.9200 without restraints) Performing minimization step: 3315. Total energy = 7160.3081 kcal/mol (7151.3238 without restraints) Performing minimization step: 3316. Total energy = 7158.7119 kcal/mol (7149.7289 without restraints) Performing minimization step: 3317. Total energy = 7157.1179 kcal/mol (7148.1359 without restraints) Performing minimization step: 3318. Total energy = 7155.5251 kcal/mol (7146.5446 without restraints) Performing minimization step: 3319. Total energy = 7153.9341 kcal/mol (7144.9547 without restraints) Performing minimization step: 3320. Total energy = 7152.3445 kcal/mol (7143.3663 without restraints) Performing minimization step: 3321. Total energy = 7150.7565 kcal/mol (7141.7794 without restraints) Performing minimization step: 3322. Total energy = 7149.1698 kcal/mol (7140.1939 without restraints) Performing minimization step: 3323. Total energy = 7147.5856 kcal/mol (7138.6109 without restraints) Performing minimization step: 3324. Total energy = 7146.0022 kcal/mol (7137.0288 without restraints) Performing minimization step: 3325. Total energy = 7144.4203 kcal/mol (7135.4480 without restraints) Performing minimization step: 3326. Total energy = 7142.8398 kcal/mol (7133.8688 without restraints) Performing minimization step: 3327. Total energy = 7141.2610 kcal/mol (7132.2911 without restraints) Performing minimization step: 3328. Total energy = 7139.6841 kcal/mol (7130.7156 without restraints) Performing minimization step: 3329. Total energy = 7138.1084 kcal/mol (7129.1410 without restraints) Performing minimization step: 3330. Total energy = 7136.5344 kcal/mol (7127.5682 without restraints) Performing minimization step: 3331. Total energy = 7134.9616 kcal/mol (7125.9966 without restraints) Performing minimization step: 3332. Total energy = 7133.3907 kcal/mol (7124.4269 without restraints) Performing minimization step: 3333. Total energy = 7131.8213 kcal/mol (7122.8587 without restraints) Performing minimization step: 3334. Total energy = 7130.2534 kcal/mol (7121.2920 without restraints) Performing minimization step: 3335. Total energy = 7128.6875 kcal/mol (7119.7273 without restraints) Performing minimization step: 3336. Total energy = 7127.1231 kcal/mol (7118.1642 without restraints) Performing minimization step: 3337. Total energy = 7125.5601 kcal/mol (7116.6024 without restraints) Performing minimization step: 3338. Total energy = 7123.9997 kcal/mol (7115.0433 without restraints) Performing minimization step: 3339. Total energy = 7122.4404 kcal/mol (7113.4851 without restraints) Performing minimization step: 3340. Total energy = 7120.8822 kcal/mol (7111.9280 without restraints) Performing minimization step: 3341. Total energy = 7119.3250 kcal/mol (7110.3721 without restraints) Performing minimization step: 3342. Total energy = 7117.7697 kcal/mol (7108.8179 without restraints) Performing minimization step: 3343. Total energy = 7116.2158 kcal/mol (7107.2653 without restraints) Performing minimization step: 3344. Total energy = 7114.6631 kcal/mol (7105.7138 without restraints) Performing minimization step: 3345. Total energy = 7113.1123 kcal/mol (7104.1642 without restraints) Performing minimization step: 3346. Total energy = 7111.5631 kcal/mol (7102.6163 without restraints) Performing minimization step: 3347. Total energy = 7110.0154 kcal/mol (7101.0698 without restraints) Performing minimization step: 3348. Total energy = 7108.4691 kcal/mol (7099.5247 without restraints) Performing minimization step: 3349. Total energy = 7106.9241 kcal/mol (7097.9807 without restraints) Performing minimization step: 3350. Total energy = 7105.3806 kcal/mol (7096.4385 without restraints) Performing minimization step: 3351. Total energy = 7103.8389 kcal/mol (7094.8980 without restraints) Performing minimization step: 3352. Total energy = 7102.2985 kcal/mol (7093.3589 without restraints) Performing minimization step: 3353. Total energy = 7100.7597 kcal/mol (7091.8213 without restraints) Performing minimization step: 3354. Total energy = 7099.2224 kcal/mol (7090.2853 without restraints) Performing minimization step: 3355. Total energy = 7097.6862 kcal/mol (7088.7502 without restraints) Performing minimization step: 3356. Total energy = 7096.1519 kcal/mol (7087.2171 without restraints) Performing minimization step: 3357. Total energy = 7094.6190 kcal/mol (7085.6854 without restraints) Performing minimization step: 3358. Total energy = 7093.0876 kcal/mol (7084.1553 without restraints) Performing minimization step: 3359. Total energy = 7091.5578 kcal/mol (7082.6268 without restraints) Performing minimization step: 3360. Total energy = 7090.0295 kcal/mol (7081.0996 without restraints) Performing minimization step: 3361. Total energy = 7088.5026 kcal/mol (7079.5738 without restraints) Performing minimization step: 3362. Total energy = 7086.9771 kcal/mol (7078.0496 without restraints) Performing minimization step: 3363. Total energy = 7085.4532 kcal/mol (7076.5269 without restraints) Performing minimization step: 3364. Total energy = 7083.9306 kcal/mol (7075.0055 without restraints) Performing minimization step: 3365. Total energy = 7082.4096 kcal/mol (7073.4858 without restraints) Performing minimization step: 3366. Total energy = 7080.8904 kcal/mol (7071.9680 without restraints) Performing minimization step: 3367. Total energy = 7079.3731 kcal/mol (7070.4517 without restraints) Performing minimization step: 3368. Total energy = 7077.8569 kcal/mol (7068.9366 without restraints) Performing minimization step: 3369. Total energy = 7076.3418 kcal/mol (7067.4229 without restraints) Performing minimization step: 3370. Total energy = 7074.8285 kcal/mol (7065.9108 without restraints) Performing minimization step: 3371. Total energy = 7073.3166 kcal/mol (7064.4000 without restraints) Performing minimization step: 3372. Total energy = 7071.8064 kcal/mol (7062.8911 without restraints) Performing minimization step: 3373. Total energy = 7070.2974 kcal/mol (7061.3833 without restraints) Performing minimization step: 3374. Total energy = 7068.7903 kcal/mol (7059.8774 without restraints) Performing minimization step: 3375. Total energy = 7067.2843 kcal/mol (7058.3726 without restraints) Performing minimization step: 3376. Total energy = 7065.7797 kcal/mol (7056.8693 without restraints) Performing minimization step: 3377. Total energy = 7064.2772 kcal/mol (7055.3679 without restraints) Performing minimization step: 3378. Total energy = 7062.7753 kcal/mol (7053.8673 without restraints) Performing minimization step: 3379. Total energy = 7061.2749 kcal/mol (7052.3681 without restraints) Performing minimization step: 3380. Total energy = 7059.7761 kcal/mol (7050.8705 without restraints) Performing minimization step: 3381. Total energy = 7058.2789 kcal/mol (7049.3745 without restraints) Performing minimization step: 3382. Total energy = 7056.7829 kcal/mol (7047.8797 without restraints) Performing minimization step: 3383. Total energy = 7055.2885 kcal/mol (7046.3866 without restraints) Performing minimization step: 3384. Total energy = 7053.7954 kcal/mol (7044.8947 without restraints) Performing minimization step: 3385. Total energy = 7052.3039 kcal/mol (7043.4044 without restraints) Performing minimization step: 3386. Total energy = 7050.8137 kcal/mol (7041.9155 without restraints) Performing minimization step: 3387. Total energy = 7049.3253 kcal/mol (7040.4284 without restraints) Performing minimization step: 3388. Total energy = 7047.8386 kcal/mol (7038.9428 without restraints) Performing minimization step: 3389. Total energy = 7046.3528 kcal/mol (7037.4582 without restraints) Performing minimization step: 3390. Total energy = 7044.8684 kcal/mol (7035.9752 without restraints) Performing minimization step: 3391. Total energy = 7043.3858 kcal/mol (7034.4937 without restraints) Performing minimization step: 3392. Total energy = 7041.9042 kcal/mol (7033.0133 without restraints) Performing minimization step: 3393. Total energy = 7040.4238 kcal/mol (7031.5341 without restraints) Performing minimization step: 3394. Total energy = 7038.9451 kcal/mol (7030.0567 without restraints) Performing minimization step: 3395. Total energy = 7037.4682 kcal/mol (7028.5810 without restraints) Performing minimization step: 3396. Total energy = 7035.9928 kcal/mol (7027.1070 without restraints) Performing minimization step: 3397. Total energy = 7034.5190 kcal/mol (7025.6344 without restraints) Performing minimization step: 3398. Total energy = 7033.0467 kcal/mol (7024.1632 without restraints) Performing minimization step: 3399. Total energy = 7031.5750 kcal/mol (7022.6927 without restraints) Performing minimization step: 3400. Total energy = 7030.1049 kcal/mol (7021.2239 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 7028.6360 kcal/mol (7019.7559 without restraints) Performing minimization step: 3402. Total energy = 7027.1688 kcal/mol (7018.2902 without restraints) Performing minimization step: 3403. Total energy = 7025.7037 kcal/mol (7016.8263 without restraints) Performing minimization step: 3404. Total energy = 7024.2392 kcal/mol (7015.3630 without restraints) Performing minimization step: 3405. Total energy = 7022.7761 kcal/mol (7013.9012 without restraints) Performing minimization step: 3406. Total energy = 7021.3145 kcal/mol (7012.4408 without restraints) Performing minimization step: 3407. Total energy = 7019.8544 kcal/mol (7010.9819 without restraints) Performing minimization step: 3408. Total energy = 7018.3958 kcal/mol (7009.5245 without restraints) Performing minimization step: 3409. Total energy = 7016.9380 kcal/mol (7008.0680 without restraints) Performing minimization step: 3410. Total energy = 7015.4818 kcal/mol (7006.6129 without restraints) Performing minimization step: 3411. Total energy = 7014.0275 kcal/mol (7005.1599 without restraints) Performing minimization step: 3412. Total energy = 7012.5741 kcal/mol (7003.7078 without restraints) Performing minimization step: 3413. Total energy = 7011.1228 kcal/mol (7002.2576 without restraints) Performing minimization step: 3414. Total energy = 7009.6726 kcal/mol (7000.8087 without restraints) Performing minimization step: 3415. Total energy = 7008.2234 kcal/mol (6999.3607 without restraints) Performing minimization step: 3416. Total energy = 7006.7758 kcal/mol (6997.9145 without restraints) Performing minimization step: 3417. Total energy = 7005.3295 kcal/mol (6996.4694 without restraints) Performing minimization step: 3418. Total energy = 7003.8846 kcal/mol (6995.0256 without restraints) Performing minimization step: 3419. Total energy = 7002.4414 kcal/mol (6993.5838 without restraints) Performing minimization step: 3420. Total energy = 7000.9994 kcal/mol (6992.1430 without restraints) Performing minimization step: 3421. Total energy = 6999.5591 kcal/mol (6990.7038 without restraints) Performing minimization step: 3422. Total energy = 6998.1200 kcal/mol (6989.2660 without restraints) Performing minimization step: 3423. Total energy = 6996.6819 kcal/mol (6987.8291 without restraints) Performing minimization step: 3424. Total energy = 6995.2452 kcal/mol (6986.3936 without restraints) Performing minimization step: 3425. Total energy = 6993.8095 kcal/mol (6984.9592 without restraints) Performing minimization step: 3426. Total energy = 6992.3756 kcal/mol (6983.5264 without restraints) Performing minimization step: 3427. Total energy = 6990.9429 kcal/mol (6982.0950 without restraints) Performing minimization step: 3428. Total energy = 6989.5116 kcal/mol (6980.6650 without restraints) Performing minimization step: 3429. Total energy = 6988.0817 kcal/mol (6979.2363 without restraints) Performing minimization step: 3430. Total energy = 6986.6534 kcal/mol (6977.8092 without restraints) Performing minimization step: 3431. Total energy = 6985.2263 kcal/mol (6976.3834 without restraints) Performing minimization step: 3432. Total energy = 6983.8012 kcal/mol (6974.9595 without restraints) Performing minimization step: 3433. Total energy = 6982.3766 kcal/mol (6973.5363 without restraints) Performing minimization step: 3434. Total energy = 6980.9537 kcal/mol (6972.1145 without restraints) Performing minimization step: 3435. Total energy = 6979.5315 kcal/mol (6970.6935 without restraints) Performing minimization step: 3436. Total energy = 6978.1112 kcal/mol (6969.2745 without restraints) Performing minimization step: 3437. Total energy = 6976.6919 kcal/mol (6967.8564 without restraints) Performing minimization step: 3438. Total energy = 6975.2742 kcal/mol (6966.4399 without restraints) Performing minimization step: 3439. Total energy = 6973.8578 kcal/mol (6965.0247 without restraints) Performing minimization step: 3440. Total energy = 6972.4425 kcal/mol (6963.6106 without restraints) Performing minimization step: 3441. Total energy = 6971.0290 kcal/mol (6962.1984 without restraints) Performing minimization step: 3442. Total energy = 6969.6168 kcal/mol (6960.7874 without restraints) Performing minimization step: 3443. Total energy = 6968.2056 kcal/mol (6959.3775 without restraints) Performing minimization step: 3444. Total energy = 6966.7965 kcal/mol (6957.9698 without restraints) Performing minimization step: 3445. Total energy = 6965.3882 kcal/mol (6956.5626 without restraints) Performing minimization step: 3446. Total energy = 6963.9811 kcal/mol (6955.1566 without restraints) Performing minimization step: 3447. Total energy = 6962.5755 kcal/mol (6953.7523 without restraints) Performing minimization step: 3448. Total energy = 6961.1710 kcal/mol (6952.3491 without restraints) Performing minimization step: 3449. Total energy = 6959.7681 kcal/mol (6950.9474 without restraints) Performing minimization step: 3450. Total energy = 6958.3660 kcal/mol (6949.5465 without restraints) Performing minimization step: 3451. Total energy = 6956.9658 kcal/mol (6948.1475 without restraints) Performing minimization step: 3452. Total energy = 6955.5668 kcal/mol (6946.7501 without restraints) Performing minimization step: 3453. Total energy = 6954.1694 kcal/mol (6945.3537 without restraints) Performing minimization step: 3454. Total energy = 6952.7721 kcal/mol (6943.9576 without restraints) Performing minimization step: 3455. Total energy = 6951.3769 kcal/mol (6942.5636 without restraints) Performing minimization step: 3456. Total energy = 6949.9837 kcal/mol (6941.1718 without restraints) Performing minimization step: 3457. Total energy = 6948.5912 kcal/mol (6939.7804 without restraints) Performing minimization step: 3458. Total energy = 6947.1998 kcal/mol (6938.3903 without restraints) Performing minimization step: 3459. Total energy = 6945.8097 kcal/mol (6937.0014 without restraints) Performing minimization step: 3460. Total energy = 6944.4208 kcal/mol (6935.6138 without restraints) Performing minimization step: 3461. Total energy = 6943.0333 kcal/mol (6934.2275 without restraints) Performing minimization step: 3462. Total energy = 6941.6473 kcal/mol (6932.8427 without restraints) Performing minimization step: 3463. Total energy = 6940.2622 kcal/mol (6931.4590 without restraints) Performing minimization step: 3464. Total energy = 6938.8786 kcal/mol (6930.0765 without restraints) Performing minimization step: 3465. Total energy = 6937.4967 kcal/mol (6928.6959 without restraints) Performing minimization step: 3466. Total energy = 6936.1156 kcal/mol (6927.3160 without restraints) Performing minimization step: 3467. Total energy = 6934.7359 kcal/mol (6925.9376 without restraints) Performing minimization step: 3468. Total energy = 6933.3580 kcal/mol (6924.5609 without restraints) Performing minimization step: 3469. Total energy = 6931.9808 kcal/mol (6923.1849 without restraints) Performing minimization step: 3470. Total energy = 6930.6049 kcal/mol (6921.8104 without restraints) Performing minimization step: 3471. Total energy = 6929.2307 kcal/mol (6920.4373 without restraints) Performing minimization step: 3472. Total energy = 6927.8571 kcal/mol (6919.0649 without restraints) Performing minimization step: 3473. Total energy = 6926.4848 kcal/mol (6917.6939 without restraints) Performing minimization step: 3474. Total energy = 6925.1148 kcal/mol (6916.3251 without restraints) Performing minimization step: 3475. Total energy = 6923.7448 kcal/mol (6914.9564 without restraints) Performing minimization step: 3476. Total energy = 6922.3764 kcal/mol (6913.5891 without restraints) Performing minimization step: 3477. Total energy = 6921.0092 kcal/mol (6912.2233 without restraints) Performing minimization step: 3478. Total energy = 6919.6438 kcal/mol (6910.8593 without restraints) Performing minimization step: 3479. Total energy = 6918.2793 kcal/mol (6909.4957 without restraints) Performing minimization step: 3480. Total energy = 6916.9158 kcal/mol (6908.1336 without restraints) Performing minimization step: 3481. Total energy = 6915.5538 kcal/mol (6906.7729 without restraints) Performing minimization step: 3482. Total energy = 6914.1934 kcal/mol (6905.4137 without restraints) Performing minimization step: 3483. Total energy = 6912.8342 kcal/mol (6904.0557 without restraints) Performing minimization step: 3484. Total energy = 6911.4759 kcal/mol (6902.6986 without restraints) Performing minimization step: 3485. Total energy = 6910.1190 kcal/mol (6901.3432 without restraints) Performing minimization step: 3486. Total energy = 6908.7638 kcal/mol (6899.9891 without restraints) Performing minimization step: 3487. Total energy = 6907.4092 kcal/mol (6898.6358 without restraints) Performing minimization step: 3488. Total energy = 6906.0563 kcal/mol (6897.2841 without restraints) Performing minimization step: 3489. Total energy = 6904.7046 kcal/mol (6895.9336 without restraints) Performing minimization step: 3490. Total energy = 6903.3538 kcal/mol (6894.5840 without restraints) Performing minimization step: 3491. Total energy = 6902.0044 kcal/mol (6893.2359 without restraints) Performing minimization step: 3492. Total energy = 6900.6563 kcal/mol (6891.8892 without restraints) Performing minimization step: 3493. Total energy = 6899.3096 kcal/mol (6890.5436 without restraints) Performing minimization step: 3494. Total energy = 6897.9635 kcal/mol (6889.1988 without restraints) Performing minimization step: 3495. Total energy = 6896.6191 kcal/mol (6887.8556 without restraints) Performing minimization step: 3496. Total energy = 6895.2756 kcal/mol (6886.5134 without restraints) Performing minimization step: 3497. Total energy = 6893.9337 kcal/mol (6885.1727 without restraints) Performing minimization step: 3498. Total energy = 6892.5928 kcal/mol (6883.8330 without restraints) Performing minimization step: 3499. Total energy = 6891.2530 kcal/mol (6882.4944 without restraints) Performing minimization step: 3500. Total energy = 6889.9145 kcal/mol (6881.1573 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 6888.5775 kcal/mol (6879.8216 without restraints) Performing minimization step: 3502. Total energy = 6887.2417 kcal/mol (6878.4870 without restraints) Performing minimization step: 3503. Total energy = 6885.9068 kcal/mol (6877.1533 without restraints) Performing minimization step: 3504. Total energy = 6884.5733 kcal/mol (6875.8211 without restraints) Performing minimization step: 3505. Total energy = 6883.2406 kcal/mol (6874.4896 without restraints) Performing minimization step: 3506. Total energy = 6881.9095 kcal/mol (6873.1597 without restraints) Performing minimization step: 3507. Total energy = 6880.5795 kcal/mol (6871.8310 without restraints) Performing minimization step: 3508. Total energy = 6879.2507 kcal/mol (6870.5034 without restraints) Performing minimization step: 3509. Total energy = 6877.9232 kcal/mol (6869.1772 without restraints) Performing minimization step: 3510. Total energy = 6876.5973 kcal/mol (6867.8525 without restraints) Performing minimization step: 3511. Total energy = 6875.2723 kcal/mol (6866.5288 without restraints) Performing minimization step: 3512. Total energy = 6873.9484 kcal/mol (6865.2062 without restraints) Performing minimization step: 3513. Total energy = 6872.6259 kcal/mol (6863.8849 without restraints) Performing minimization step: 3514. Total energy = 6871.3043 kcal/mol (6862.5646 without restraints) Performing minimization step: 3515. Total energy = 6869.9838 kcal/mol (6861.2453 without restraints) Performing minimization step: 3516. Total energy = 6868.6648 kcal/mol (6859.9276 without restraints) Performing minimization step: 3517. Total energy = 6867.3467 kcal/mol (6858.6107 without restraints) Performing minimization step: 3518. Total energy = 6866.0299 kcal/mol (6857.2952 without restraints) Performing minimization step: 3519. Total energy = 6864.7141 kcal/mol (6855.9808 without restraints) Performing minimization step: 3520. Total energy = 6863.3998 kcal/mol (6854.6677 without restraints) Performing minimization step: 3521. Total energy = 6862.0868 kcal/mol (6853.3559 without restraints) Performing minimization step: 3522. Total energy = 6860.7746 kcal/mol (6852.0449 without restraints) Performing minimization step: 3523. Total energy = 6859.4638 kcal/mol (6850.7353 without restraints) Performing minimization step: 3524. Total energy = 6858.1540 kcal/mol (6849.4268 without restraints) Performing minimization step: 3525. Total energy = 6856.8458 kcal/mol (6848.1198 without restraints) Performing minimization step: 3526. Total energy = 6855.5388 kcal/mol (6846.8142 without restraints) Performing minimization step: 3527. Total energy = 6854.2326 kcal/mol (6845.5091 without restraints) Performing minimization step: 3528. Total energy = 6852.9277 kcal/mol (6844.2055 without restraints) Performing minimization step: 3529. Total energy = 6851.6242 kcal/mol (6842.9032 without restraints) Performing minimization step: 3530. Total energy = 6850.3213 kcal/mol (6841.6017 without restraints) Performing minimization step: 3531. Total energy = 6849.0197 kcal/mol (6840.3013 without restraints) Performing minimization step: 3532. Total energy = 6847.7191 kcal/mol (6839.0019 without restraints) Performing minimization step: 3533. Total energy = 6846.4201 kcal/mol (6837.7041 without restraints) Performing minimization step: 3534. Total energy = 6845.1220 kcal/mol (6836.4073 without restraints) Performing minimization step: 3535. Total energy = 6843.8249 kcal/mol (6835.1117 without restraints) Performing minimization step: 3536. Total energy = 6842.5293 kcal/mol (6833.8171 without restraints) Performing minimization step: 3537. Total energy = 6841.2347 kcal/mol (6832.5238 without restraints) Performing minimization step: 3538. Total energy = 6839.9416 kcal/mol (6831.2319 without restraints) Performing minimization step: 3539. Total energy = 6838.6491 kcal/mol (6829.9407 without restraints) Performing minimization step: 3540. Total energy = 6837.3579 kcal/mol (6828.6509 without restraints) Performing minimization step: 3541. Total energy = 6836.0681 kcal/mol (6827.3623 without restraints) Performing minimization step: 3542. Total energy = 6834.7793 kcal/mol (6826.0747 without restraints) Performing minimization step: 3543. Total energy = 6833.4919 kcal/mol (6824.7886 without restraints) Performing minimization step: 3544. Total energy = 6832.2057 kcal/mol (6823.5036 without restraints) Performing minimization step: 3545. Total energy = 6830.9202 kcal/mol (6822.2194 without restraints) Performing minimization step: 3546. Total energy = 6829.6365 kcal/mol (6820.9370 without restraints) Performing minimization step: 3547. Total energy = 6828.3538 kcal/mol (6819.6556 without restraints) Performing minimization step: 3548. Total energy = 6827.0719 kcal/mol (6818.3749 without restraints) Performing minimization step: 3549. Total energy = 6825.7911 kcal/mol (6817.0954 without restraints) Performing minimization step: 3550. Total energy = 6824.5112 kcal/mol (6815.8167 without restraints) Performing minimization step: 3551. Total energy = 6823.2328 kcal/mol (6814.5395 without restraints) Performing minimization step: 3552. Total energy = 6821.9553 kcal/mol (6813.2632 without restraints) Performing minimization step: 3553. Total energy = 6820.6788 kcal/mol (6811.9880 without restraints) Performing minimization step: 3554. Total energy = 6819.4035 kcal/mol (6810.7140 without restraints) Performing minimization step: 3555. Total energy = 6818.1299 kcal/mol (6809.4417 without restraints) Performing minimization step: 3556. Total energy = 6816.8569 kcal/mol (6808.1699 without restraints) Performing minimization step: 3557. Total energy = 6815.5850 kcal/mol (6806.8993 without restraints) Performing minimization step: 3558. Total energy = 6814.3146 kcal/mol (6805.6301 without restraints) Performing minimization step: 3559. Total energy = 6813.0452 kcal/mol (6804.3620 without restraints) Performing minimization step: 3560. Total energy = 6811.7768 kcal/mol (6803.0948 without restraints) Performing minimization step: 3561. Total energy = 6810.5094 kcal/mol (6801.8287 without restraints) Performing minimization step: 3562. Total energy = 6809.2430 kcal/mol (6800.5636 without restraints) Performing minimization step: 3563. Total energy = 6807.9781 kcal/mol (6799.3000 without restraints) Performing minimization step: 3564. Total energy = 6806.7141 kcal/mol (6798.0372 without restraints) Performing minimization step: 3565. Total energy = 6805.4515 kcal/mol (6796.7758 without restraints) Performing minimization step: 3566. Total energy = 6804.1898 kcal/mol (6795.5154 without restraints) Performing minimization step: 3567. Total energy = 6802.9296 kcal/mol (6794.2567 without restraints) Performing minimization step: 3568. Total energy = 6801.6700 kcal/mol (6792.9982 without restraints) Performing minimization step: 3569. Total energy = 6800.4117 kcal/mol (6791.7411 without restraints) Performing minimization step: 3570. Total energy = 6799.1543 kcal/mol (6790.4851 without restraints) Performing minimization step: 3571. Total energy = 6797.8983 kcal/mol (6789.2302 without restraints) Performing minimization step: 3572. Total energy = 6796.6432 kcal/mol (6787.9764 without restraints) Performing minimization step: 3573. Total energy = 6795.3894 kcal/mol (6786.7239 without restraints) Performing minimization step: 3574. Total energy = 6794.1366 kcal/mol (6785.4723 without restraints) Performing minimization step: 3575. Total energy = 6792.8846 kcal/mol (6784.2217 without restraints) Performing minimization step: 3576. Total energy = 6791.6344 kcal/mol (6782.9726 without restraints) Performing minimization step: 3577. Total energy = 6790.3849 kcal/mol (6781.7245 without restraints) Performing minimization step: 3578. Total energy = 6789.1364 kcal/mol (6780.4771 without restraints) Performing minimization step: 3579. Total energy = 6787.8890 kcal/mol (6779.2310 without restraints) Performing minimization step: 3580. Total energy = 6786.6425 kcal/mol (6777.9858 without restraints) Performing minimization step: 3581. Total energy = 6785.3973 kcal/mol (6776.7418 without restraints) Performing minimization step: 3582. Total energy = 6784.1531 kcal/mol (6775.4989 without restraints) Performing minimization step: 3583. Total energy = 6782.9099 kcal/mol (6774.2570 without restraints) Performing minimization step: 3584. Total energy = 6781.6678 kcal/mol (6773.0162 without restraints) Performing minimization step: 3585. Total energy = 6780.4275 kcal/mol (6771.7771 without restraints) Performing minimization step: 3586. Total energy = 6779.1875 kcal/mol (6770.5384 without restraints) Performing minimization step: 3587. Total energy = 6777.9487 kcal/mol (6769.3009 without restraints) Performing minimization step: 3588. Total energy = 6776.7108 kcal/mol (6768.0642 without restraints) Performing minimization step: 3589. Total energy = 6775.4739 kcal/mol (6766.8286 without restraints) Performing minimization step: 3590. Total energy = 6774.2382 kcal/mol (6765.5941 without restraints) Performing minimization step: 3591. Total energy = 6773.0036 kcal/mol (6764.3609 without restraints) Performing minimization step: 3592. Total energy = 6771.7700 kcal/mol (6763.1284 without restraints) Performing minimization step: 3593. Total energy = 6770.5374 kcal/mol (6761.8972 without restraints) Performing minimization step: 3594. Total energy = 6769.3067 kcal/mol (6760.6678 without restraints) Performing minimization step: 3595. Total energy = 6768.0765 kcal/mol (6759.4386 without restraints) Performing minimization step: 3596. Total energy = 6766.8473 kcal/mol (6758.2109 without restraints) Performing minimization step: 3597. Total energy = 6765.6191 kcal/mol (6756.9839 without restraints) Performing minimization step: 3598. Total energy = 6764.3925 kcal/mol (6755.7586 without restraints) Performing minimization step: 3599. Total energy = 6763.1666 kcal/mol (6754.5337 without restraints) Performing minimization step: 3600. Total energy = 6761.9412 kcal/mol (6753.3098 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 6760.7173 kcal/mol (6752.0873 without restraints) Performing minimization step: 3602. Total energy = 6759.4947 kcal/mol (6750.8658 without restraints) Performing minimization step: 3603. Total energy = 6758.2730 kcal/mol (6749.6454 without restraints) Performing minimization step: 3604. Total energy = 6757.0522 kcal/mol (6748.4258 without restraints) Performing minimization step: 3605. Total energy = 6755.8327 kcal/mol (6747.2077 without restraints) Performing minimization step: 3606. Total energy = 6754.6140 kcal/mol (6745.9902 without restraints) Performing minimization step: 3607. Total energy = 6753.3961 kcal/mol (6744.7736 without restraints) Performing minimization step: 3608. Total energy = 6752.1797 kcal/mol (6743.5584 without restraints) Performing minimization step: 3609. Total energy = 6750.9641 kcal/mol (6742.3441 without restraints) Performing minimization step: 3610. Total energy = 6749.7495 kcal/mol (6741.1308 without restraints) Performing minimization step: 3611. Total energy = 6748.5358 kcal/mol (6739.9184 without restraints) Performing minimization step: 3612. Total energy = 6747.3234 kcal/mol (6738.7072 without restraints) Performing minimization step: 3613. Total energy = 6746.1127 kcal/mol (6737.4980 without restraints) Performing minimization step: 3614. Total energy = 6744.9029 kcal/mol (6736.2893 without restraints) Performing minimization step: 3615. Total energy = 6743.6936 kcal/mol (6735.0812 without restraints) Performing minimization step: 3616. Total energy = 6742.4856 kcal/mol (6733.8745 without restraints) Performing minimization step: 3617. Total energy = 6741.2783 kcal/mol (6732.6684 without restraints) Performing minimization step: 3618. Total energy = 6740.0722 kcal/mol (6731.4636 without restraints) Performing minimization step: 3619. Total energy = 6738.8672 kcal/mol (6730.2598 without restraints) Performing minimization step: 3620. Total energy = 6737.6632 kcal/mol (6729.0571 without restraints) Performing minimization step: 3621. Total energy = 6736.4605 kcal/mol (6727.8558 without restraints) Performing minimization step: 3622. Total energy = 6735.2585 kcal/mol (6726.6550 without restraints) Performing minimization step: 3623. Total energy = 6734.0577 kcal/mol (6725.4556 without restraints) Performing minimization step: 3624. Total energy = 6732.8578 kcal/mol (6724.2568 without restraints) Performing minimization step: 3625. Total energy = 6731.6587 kcal/mol (6723.0590 without restraints) Performing minimization step: 3626. Total energy = 6730.4609 kcal/mol (6721.8625 without restraints) Performing minimization step: 3627. Total energy = 6729.2637 kcal/mol (6720.6665 without restraints) Performing minimization step: 3628. Total energy = 6728.0676 kcal/mol (6719.4718 without restraints) Performing minimization step: 3629. Total energy = 6726.8726 kcal/mol (6718.2780 without restraints) Performing minimization step: 3630. Total energy = 6725.6789 kcal/mol (6717.0855 without restraints) Performing minimization step: 3631. Total energy = 6724.4862 kcal/mol (6715.8941 without restraints) Performing minimization step: 3632. Total energy = 6723.2943 kcal/mol (6714.7037 without restraints) Performing minimization step: 3633. Total energy = 6722.1038 kcal/mol (6713.5143 without restraints) Performing minimization step: 3634. Total energy = 6720.9142 kcal/mol (6712.3259 without restraints) Performing minimization step: 3635. Total energy = 6719.7251 kcal/mol (6711.1381 without restraints) Performing minimization step: 3636. Total energy = 6718.5374 kcal/mol (6709.9517 without restraints) Performing minimization step: 3637. Total energy = 6717.3504 kcal/mol (6708.7661 without restraints) Performing minimization step: 3638. Total energy = 6716.1647 kcal/mol (6707.5815 without restraints) Performing minimization step: 3639. Total energy = 6714.9797 kcal/mol (6706.3978 without restraints) Performing minimization step: 3640. Total energy = 6713.7960 kcal/mol (6705.2154 without restraints) Performing minimization step: 3641. Total energy = 6712.6126 kcal/mol (6704.0334 without restraints) Performing minimization step: 3642. Total energy = 6711.4307 kcal/mol (6702.8526 without restraints) Performing minimization step: 3643. Total energy = 6710.2500 kcal/mol (6701.6731 without restraints) Performing minimization step: 3644. Total energy = 6709.0702 kcal/mol (6700.4945 without restraints) Performing minimization step: 3645. Total energy = 6707.8911 kcal/mol (6699.3168 without restraints) Performing minimization step: 3646. Total energy = 6706.7132 kcal/mol (6698.1402 without restraints) Performing minimization step: 3647. Total energy = 6705.5363 kcal/mol (6696.9646 without restraints) Performing minimization step: 3648. Total energy = 6704.3609 kcal/mol (6695.7905 without restraints) Performing minimization step: 3649. Total energy = 6703.1860 kcal/mol (6694.6168 without restraints) Performing minimization step: 3650. Total energy = 6702.0123 kcal/mol (6693.4444 without restraints) Performing minimization step: 3651. Total energy = 6700.8394 kcal/mol (6692.2729 without restraints) Performing minimization step: 3652. Total energy = 6699.6676 kcal/mol (6691.1022 without restraints) Performing minimization step: 3653. Total energy = 6698.4967 kcal/mol (6689.9328 without restraints) Performing minimization step: 3654. Total energy = 6697.3272 kcal/mol (6688.7645 without restraints) Performing minimization step: 3655. Total energy = 6696.1584 kcal/mol (6687.5969 without restraints) Performing minimization step: 3656. Total energy = 6694.9906 kcal/mol (6686.4304 without restraints) Performing minimization step: 3657. Total energy = 6693.8236 kcal/mol (6685.2646 without restraints) Performing minimization step: 3658. Total energy = 6692.6576 kcal/mol (6684.0997 without restraints) Performing minimization step: 3659. Total energy = 6691.4922 kcal/mol (6682.9357 without restraints) Performing minimization step: 3660. Total energy = 6690.3281 kcal/mol (6681.7730 without restraints) Performing minimization step: 3661. Total energy = 6689.1650 kcal/mol (6680.6111 without restraints) Performing minimization step: 3662. Total energy = 6688.0028 kcal/mol (6679.4502 without restraints) Performing minimization step: 3663. Total energy = 6686.8420 kcal/mol (6678.2907 without restraints) Performing minimization step: 3664. Total energy = 6685.6818 kcal/mol (6677.1317 without restraints) Performing minimization step: 3665. Total energy = 6684.5226 kcal/mol (6675.9738 without restraints) Performing minimization step: 3666. Total energy = 6683.3644 kcal/mol (6674.8170 without restraints) Performing minimization step: 3667. Total energy = 6682.2070 kcal/mol (6673.6608 without restraints) Performing minimization step: 3668. Total energy = 6681.0508 kcal/mol (6672.5058 without restraints) Performing minimization step: 3669. Total energy = 6679.8949 kcal/mol (6671.3513 without restraints) Performing minimization step: 3670. Total energy = 6678.7406 kcal/mol (6670.1981 without restraints) Performing minimization step: 3671. Total energy = 6677.5870 kcal/mol (6669.0458 without restraints) Performing minimization step: 3672. Total energy = 6676.4345 kcal/mol (6667.8947 without restraints) Performing minimization step: 3673. Total energy = 6675.2834 kcal/mol (6666.7448 without restraints) Performing minimization step: 3674. Total energy = 6674.1334 kcal/mol (6665.5961 without restraints) Performing minimization step: 3675. Total energy = 6672.9835 kcal/mol (6664.4475 without restraints) Performing minimization step: 3676. Total energy = 6671.8347 kcal/mol (6663.3000 without restraints) Performing minimization step: 3677. Total energy = 6670.6872 kcal/mol (6662.1537 without restraints) Performing minimization step: 3678. Total energy = 6669.5400 kcal/mol (6661.0077 without restraints) Performing minimization step: 3679. Total energy = 6668.3943 kcal/mol (6659.8634 without restraints) Performing minimization step: 3680. Total energy = 6667.2491 kcal/mol (6658.7194 without restraints) Performing minimization step: 3681. Total energy = 6666.1053 kcal/mol (6657.5769 without restraints) Performing minimization step: 3682. Total energy = 6664.9620 kcal/mol (6656.4349 without restraints) Performing minimization step: 3683. Total energy = 6663.8200 kcal/mol (6655.2942 without restraints) Performing minimization step: 3684. Total energy = 6662.6786 kcal/mol (6654.1541 without restraints) Performing minimization step: 3685. Total energy = 6661.5388 kcal/mol (6653.0156 without restraints) Performing minimization step: 3686. Total energy = 6660.3995 kcal/mol (6651.8775 without restraints) Performing minimization step: 3687. Total energy = 6659.2613 kcal/mol (6650.7405 without restraints) Performing minimization step: 3688. Total energy = 6658.1239 kcal/mol (6649.6046 without restraints) Performing minimization step: 3689. Total energy = 6656.9878 kcal/mol (6648.4696 without restraints) Performing minimization step: 3690. Total energy = 6655.8522 kcal/mol (6647.3353 without restraints) Performing minimization step: 3691. Total energy = 6654.7179 kcal/mol (6646.2024 without restraints) Performing minimization step: 3692. Total energy = 6653.5850 kcal/mol (6645.0707 without restraints) Performing minimization step: 3693. Total energy = 6652.4523 kcal/mol (6643.9392 without restraints) Performing minimization step: 3694. Total energy = 6651.3207 kcal/mol (6642.8090 without restraints) Performing minimization step: 3695. Total energy = 6650.1901 kcal/mol (6641.6796 without restraints) Performing minimization step: 3696. Total energy = 6649.0603 kcal/mol (6640.5511 without restraints) Performing minimization step: 3697. Total energy = 6647.9312 kcal/mol (6639.4233 without restraints) Performing minimization step: 3698. Total energy = 6646.8032 kcal/mol (6638.2969 without restraints) Performing minimization step: 3699. Total energy = 6645.6762 kcal/mol (6637.1707 without restraints) Performing minimization step: 3700. Total energy = 6644.5487 kcal/mol (6636.0446 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 6643.4236 kcal/mol (6634.9208 without restraints) Performing minimization step: 3702. Total energy = 6642.2992 kcal/mol (6633.7975 without restraints) Performing minimization step: 3703. Total energy = 6641.1754 kcal/mol (6632.6750 without restraints) Performing minimization step: 3704. Total energy = 6640.0530 kcal/mol (6631.5540 without restraints) Performing minimization step: 3705. Total energy = 6638.9314 kcal/mol (6630.4338 without restraints) Performing minimization step: 3706. Total energy = 6637.8105 kcal/mol (6629.3141 without restraints) Performing minimization step: 3707. Total energy = 6636.6909 kcal/mol (6628.1957 without restraints) Performing minimization step: 3708. Total energy = 6635.5717 kcal/mol (6627.0778 without restraints) Performing minimization step: 3709. Total energy = 6634.4542 kcal/mol (6625.9616 without restraints) Performing minimization step: 3710. Total energy = 6633.3370 kcal/mol (6624.8457 without restraints) Performing minimization step: 3711. Total energy = 6632.2207 kcal/mol (6623.7306 without restraints) Performing minimization step: 3712. Total energy = 6631.1056 kcal/mol (6622.6170 without restraints) Performing minimization step: 3713. Total energy = 6629.9915 kcal/mol (6621.5042 without restraints) Performing minimization step: 3714. Total energy = 6628.8777 kcal/mol (6620.3915 without restraints) Performing minimization step: 3715. Total energy = 6627.7649 kcal/mol (6619.2798 without restraints) Performing minimization step: 3716. Total energy = 6626.6530 kcal/mol (6618.1693 without restraints) Performing minimization step: 3717. Total energy = 6625.5420 kcal/mol (6617.0596 without restraints) Performing minimization step: 3718. Total energy = 6624.4320 kcal/mol (6615.9509 without restraints) Performing minimization step: 3719. Total energy = 6623.3234 kcal/mol (6614.8435 without restraints) Performing minimization step: 3720. Total energy = 6622.2154 kcal/mol (6613.7369 without restraints) Performing minimization step: 3721. Total energy = 6621.1081 kcal/mol (6612.6309 without restraints) Performing minimization step: 3722. Total energy = 6620.0016 kcal/mol (6611.5256 without restraints) Performing minimization step: 3723. Total energy = 6618.8962 kcal/mol (6610.4217 without restraints) Performing minimization step: 3724. Total energy = 6617.7919 kcal/mol (6609.3185 without restraints) Performing minimization step: 3725. Total energy = 6616.6881 kcal/mol (6608.2159 without restraints) Performing minimization step: 3726. Total energy = 6615.5855 kcal/mol (6607.1146 without restraints) Performing minimization step: 3727. Total energy = 6614.4838 kcal/mol (6606.0141 without restraints) Performing minimization step: 3728. Total energy = 6613.3826 kcal/mol (6604.9144 without restraints) Performing minimization step: 3729. Total energy = 6612.2826 kcal/mol (6603.8155 without restraints) Performing minimization step: 3730. Total energy = 6611.1835 kcal/mol (6602.7178 without restraints) Performing minimization step: 3731. Total energy = 6610.0850 kcal/mol (6601.6205 without restraints) Performing minimization step: 3732. Total energy = 6608.9872 kcal/mol (6600.5240 without restraints) Performing minimization step: 3733. Total energy = 6607.8908 kcal/mol (6599.4288 without restraints) Performing minimization step: 3734. Total energy = 6606.7951 kcal/mol (6598.3344 without restraints) Performing minimization step: 3735. Total energy = 6605.7001 kcal/mol (6597.2407 without restraints) Performing minimization step: 3736. Total energy = 6604.6060 kcal/mol (6596.1478 without restraints) Performing minimization step: 3737. Total energy = 6603.5122 kcal/mol (6595.0553 without restraints) Performing minimization step: 3738. Total energy = 6602.4200 kcal/mol (6593.9645 without restraints) Performing minimization step: 3739. Total energy = 6601.3286 kcal/mol (6592.8743 without restraints) Performing minimization step: 3740. Total energy = 6600.2377 kcal/mol (6591.7847 without restraints) Performing minimization step: 3741. Total energy = 6599.1481 kcal/mol (6590.6965 without restraints) Performing minimization step: 3742. Total energy = 6598.0590 kcal/mol (6589.6086 without restraints) Performing minimization step: 3743. Total energy = 6596.9715 kcal/mol (6588.5225 without restraints) Performing minimization step: 3744. Total energy = 6595.8843 kcal/mol (6587.4365 without restraints) Performing minimization step: 3745. Total energy = 6594.7979 kcal/mol (6586.3514 without restraints) Performing minimization step: 3746. Total energy = 6593.7123 kcal/mol (6585.2670 without restraints) Performing minimization step: 3747. Total energy = 6592.6275 kcal/mol (6584.1834 without restraints) Performing minimization step: 3748. Total energy = 6591.5435 kcal/mol (6583.1007 without restraints) Performing minimization step: 3749. Total energy = 6590.4609 kcal/mol (6582.0195 without restraints) Performing minimization step: 3750. Total energy = 6589.3784 kcal/mol (6580.9382 without restraints) Performing minimization step: 3751. Total energy = 6588.2965 kcal/mol (6579.8576 without restraints) Performing minimization step: 3752. Total energy = 6587.2160 kcal/mol (6578.7782 without restraints) Performing minimization step: 3753. Total energy = 6586.1361 kcal/mol (6577.6997 without restraints) Performing minimization step: 3754. Total energy = 6585.0572 kcal/mol (6576.6221 without restraints) Performing minimization step: 3755. Total energy = 6583.9793 kcal/mol (6575.5455 without restraints) Performing minimization step: 3756. Total energy = 6582.9023 kcal/mol (6574.4698 without restraints) Performing minimization step: 3757. Total energy = 6581.8260 kcal/mol (6573.3948 without restraints) Performing minimization step: 3758. Total energy = 6580.7510 kcal/mol (6572.3210 without restraints) Performing minimization step: 3759. Total energy = 6579.6763 kcal/mol (6571.2477 without restraints) Performing minimization step: 3760. Total energy = 6578.6024 kcal/mol (6570.1751 without restraints) Performing minimization step: 3761. Total energy = 6577.5294 kcal/mol (6569.1032 without restraints) Performing minimization step: 3762. Total energy = 6576.4569 kcal/mol (6568.0320 without restraints) Performing minimization step: 3763. Total energy = 6575.3855 kcal/mol (6566.9619 without restraints) Performing minimization step: 3764. Total energy = 6574.3151 kcal/mol (6565.8928 without restraints) Performing minimization step: 3765. Total energy = 6573.2445 kcal/mol (6564.8235 without restraints) Performing minimization step: 3766. Total energy = 6572.1760 kcal/mol (6563.7563 without restraints) Performing minimization step: 3767. Total energy = 6571.1080 kcal/mol (6562.6896 without restraints) Performing minimization step: 3768. Total energy = 6570.0407 kcal/mol (6561.6235 without restraints) Performing minimization step: 3769. Total energy = 6568.9743 kcal/mol (6560.5584 without restraints) Performing minimization step: 3770. Total energy = 6567.9087 kcal/mol (6559.4941 without restraints) Performing minimization step: 3771. Total energy = 6566.8438 kcal/mol (6558.4305 without restraints) Performing minimization step: 3772. Total energy = 6565.7797 kcal/mol (6557.3677 without restraints) Performing minimization step: 3773. Total energy = 6564.7164 kcal/mol (6556.3057 without restraints) Performing minimization step: 3774. Total energy = 6563.6539 kcal/mol (6555.2444 without restraints) Performing minimization step: 3775. Total energy = 6562.5922 kcal/mol (6554.1840 without restraints) Performing minimization step: 3776. Total energy = 6561.5315 kcal/mol (6553.1245 without restraints) Performing minimization step: 3777. Total energy = 6560.4714 kcal/mol (6552.0659 without restraints) Performing minimization step: 3778. Total energy = 6559.4131 kcal/mol (6551.0089 without restraints) Performing minimization step: 3779. Total energy = 6558.3542 kcal/mol (6549.9510 without restraints) Performing minimization step: 3780. Total energy = 6557.2964 kcal/mol (6548.8946 without restraints) Performing minimization step: 3781. Total energy = 6556.2395 kcal/mol (6547.8390 without restraints) Performing minimization step: 3782. Total energy = 6555.1835 kcal/mol (6546.7844 without restraints) Performing minimization step: 3783. Total energy = 6554.1287 kcal/mol (6545.7308 without restraints) Performing minimization step: 3784. Total energy = 6553.0743 kcal/mol (6544.6779 without restraints) Performing minimization step: 3785. Total energy = 6552.0207 kcal/mol (6543.6253 without restraints) Performing minimization step: 3786. Total energy = 6550.9682 kcal/mol (6542.5741 without restraints) Performing minimization step: 3787. Total energy = 6549.9162 kcal/mol (6541.5234 without restraints) Performing minimization step: 3788. Total energy = 6548.8652 kcal/mol (6540.4736 without restraints) Performing minimization step: 3789. Total energy = 6547.8146 kcal/mol (6539.4243 without restraints) Performing minimization step: 3790. Total energy = 6546.7651 kcal/mol (6538.3760 without restraints) Performing minimization step: 3791. Total energy = 6545.7160 kcal/mol (6537.3282 without restraints) Performing minimization step: 3792. Total energy = 6544.6682 kcal/mol (6536.2817 without restraints) Performing minimization step: 3793. Total energy = 6543.6207 kcal/mol (6535.2358 without restraints) Performing minimization step: 3794. Total energy = 6542.5749 kcal/mol (6534.1910 without restraints) Performing minimization step: 3795. Total energy = 6541.5291 kcal/mol (6533.1464 without restraints) Performing minimization step: 3796. Total energy = 6540.4840 kcal/mol (6532.1026 without restraints) Performing minimization step: 3797. Total energy = 6539.4402 kcal/mol (6531.0602 without restraints) Performing minimization step: 3798. Total energy = 6538.3968 kcal/mol (6530.0180 without restraints) Performing minimization step: 3799. Total energy = 6537.3542 kcal/mol (6528.9768 without restraints) Performing minimization step: 3800. Total energy = 6536.3124 kcal/mol (6527.9362 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 6535.2711 kcal/mol (6526.8962 without restraints) Performing minimization step: 3802. Total energy = 6534.2306 kcal/mol (6525.8569 without restraints) Performing minimization step: 3803. Total energy = 6533.1909 kcal/mol (6524.8186 without restraints) Performing minimization step: 3804. Total energy = 6532.1524 kcal/mol (6523.7813 without restraints) Performing minimization step: 3805. Total energy = 6531.1144 kcal/mol (6522.7445 without restraints) Performing minimization step: 3806. Total energy = 6530.0766 kcal/mol (6521.7081 without restraints) Performing minimization step: 3807. Total energy = 6529.0400 kcal/mol (6520.6727 without restraints) Performing minimization step: 3808. Total energy = 6528.0047 kcal/mol (6519.6388 without restraints) Performing minimization step: 3809. Total energy = 6526.9698 kcal/mol (6518.6051 without restraints) Performing minimization step: 3810. Total energy = 6525.9353 kcal/mol (6517.5718 without restraints) Performing minimization step: 3811. Total energy = 6524.9014 kcal/mol (6516.5392 without restraints) Performing minimization step: 3812. Total energy = 6523.8685 kcal/mol (6515.5076 without restraints) Performing minimization step: 3813. Total energy = 6522.8367 kcal/mol (6514.4771 without restraints) Performing minimization step: 3814. Total energy = 6521.8055 kcal/mol (6513.4471 without restraints) Performing minimization step: 3815. Total energy = 6520.7750 kcal/mol (6512.4179 without restraints) Performing minimization step: 3816. Total energy = 6519.7452 kcal/mol (6511.3894 without restraints) Performing minimization step: 3817. Total energy = 6518.7162 kcal/mol (6510.3617 without restraints) Performing minimization step: 3818. Total energy = 6517.6881 kcal/mol (6509.3348 without restraints) Performing minimization step: 3819. Total energy = 6516.6604 kcal/mol (6508.3085 without restraints) Performing minimization step: 3820. Total energy = 6515.6336 kcal/mol (6507.2829 without restraints) Performing minimization step: 3821. Total energy = 6514.6077 kcal/mol (6506.2584 without restraints) Performing minimization step: 3822. Total energy = 6513.5824 kcal/mol (6505.2343 without restraints) Performing minimization step: 3823. Total energy = 6512.5574 kcal/mol (6504.2105 without restraints) Performing minimization step: 3824. Total energy = 6511.5334 kcal/mol (6503.1877 without restraints) Performing minimization step: 3825. Total energy = 6510.5100 kcal/mol (6502.1657 without restraints) Performing minimization step: 3826. Total energy = 6509.4874 kcal/mol (6501.1444 without restraints) Performing minimization step: 3827. Total energy = 6508.4658 kcal/mol (6500.1240 without restraints) Performing minimization step: 3828. Total energy = 6507.4447 kcal/mol (6499.1042 without restraints) Performing minimization step: 3829. Total energy = 6506.4245 kcal/mol (6498.0854 without restraints) Performing minimization step: 3830. Total energy = 6505.4051 kcal/mol (6497.0672 without restraints) Performing minimization step: 3831. Total energy = 6504.3857 kcal/mol (6496.0491 without restraints) Performing minimization step: 3832. Total energy = 6503.3677 kcal/mol (6495.0323 without restraints) Performing minimization step: 3833. Total energy = 6502.3502 kcal/mol (6494.0163 without restraints) Performing minimization step: 3834. Total energy = 6501.3338 kcal/mol (6493.0010 without restraints) Performing minimization step: 3835. Total energy = 6500.3180 kcal/mol (6491.9864 without restraints) Performing minimization step: 3836. Total energy = 6499.3031 kcal/mol (6490.9729 without restraints) Performing minimization step: 3837. Total energy = 6498.2892 kcal/mol (6489.9602 without restraints) Performing minimization step: 3838. Total energy = 6497.2751 kcal/mol (6488.9474 without restraints) Performing minimization step: 3839. Total energy = 6496.2617 kcal/mol (6487.9351 without restraints) Performing minimization step: 3840. Total energy = 6495.2486 kcal/mol (6486.9235 without restraints) Performing minimization step: 3841. Total energy = 6494.2375 kcal/mol (6485.9136 without restraints) Performing minimization step: 3842. Total energy = 6493.2265 kcal/mol (6484.9038 without restraints) Performing minimization step: 3843. Total energy = 6492.2161 kcal/mol (6483.8948 without restraints) Performing minimization step: 3844. Total energy = 6491.2064 kcal/mol (6482.8863 without restraints) Performing minimization step: 3845. Total energy = 6490.1973 kcal/mol (6481.8785 without restraints) Performing minimization step: 3846. Total energy = 6489.1889 kcal/mol (6480.8714 without restraints) Performing minimization step: 3847. Total energy = 6488.1817 kcal/mol (6479.8654 without restraints) Performing minimization step: 3848. Total energy = 6487.1750 kcal/mol (6478.8600 without restraints) Performing minimization step: 3849. Total energy = 6486.1691 kcal/mol (6477.8554 without restraints) Performing minimization step: 3850. Total energy = 6485.1639 kcal/mol (6476.8516 without restraints) Performing minimization step: 3851. Total energy = 6484.1595 kcal/mol (6475.8485 without restraints) Performing minimization step: 3852. Total energy = 6483.1555 kcal/mol (6474.8456 without restraints) Performing minimization step: 3853. Total energy = 6482.1522 kcal/mol (6473.8437 without restraints) Performing minimization step: 3854. Total energy = 6481.1501 kcal/mol (6472.8427 without restraints) Performing minimization step: 3855. Total energy = 6480.1479 kcal/mol (6471.8419 without restraints) Performing minimization step: 3856. Total energy = 6479.1463 kcal/mol (6470.8415 without restraints) Performing minimization step: 3857. Total energy = 6478.1456 kcal/mol (6469.8421 without restraints) Performing minimization step: 3858. Total energy = 6477.1453 kcal/mol (6468.8431 without restraints) Performing minimization step: 3859. Total energy = 6476.1462 kcal/mol (6467.8452 without restraints) Performing minimization step: 3860. Total energy = 6475.1474 kcal/mol (6466.8479 without restraints) Performing minimization step: 3861. Total energy = 6474.1495 kcal/mol (6465.8511 without restraints) Performing minimization step: 3862. Total energy = 6473.1522 kcal/mol (6464.8552 without restraints) Performing minimization step: 3863. Total energy = 6472.1556 kcal/mol (6463.8597 without restraints) Performing minimization step: 3864. Total energy = 6471.1600 kcal/mol (6462.8654 without restraints) Performing minimization step: 3865. Total energy = 6470.1645 kcal/mol (6461.8712 without restraints) Performing minimization step: 3866. Total energy = 6469.1697 kcal/mol (6460.8777 without restraints) Performing minimization step: 3867. Total energy = 6468.1761 kcal/mol (6459.8854 without restraints) Performing minimization step: 3868. Total energy = 6467.1829 kcal/mol (6458.8935 without restraints) Performing minimization step: 3869. Total energy = 6466.1901 kcal/mol (6457.9020 without restraints) Performing minimization step: 3870. Total energy = 6465.1980 kcal/mol (6456.9111 without restraints) Performing minimization step: 3871. Total energy = 6464.2070 kcal/mol (6455.9213 without restraints) Performing minimization step: 3872. Total energy = 6463.2165 kcal/mol (6454.9321 without restraints) Performing minimization step: 3873. Total energy = 6462.2262 kcal/mol (6453.9430 without restraints) Performing minimization step: 3874. Total energy = 6461.2368 kcal/mol (6452.9550 without restraints) Performing minimization step: 3875. Total energy = 6460.2484 kcal/mol (6451.9678 without restraints) Performing minimization step: 3876. Total energy = 6459.2608 kcal/mol (6450.9814 without restraints) Performing minimization step: 3877. Total energy = 6458.2736 kcal/mol (6449.9957 without restraints) Performing minimization step: 3878. Total energy = 6457.2872 kcal/mol (6449.0105 without restraints) Performing minimization step: 3879. Total energy = 6456.3016 kcal/mol (6448.0261 without restraints) Performing minimization step: 3880. Total energy = 6455.3161 kcal/mol (6447.0418 without restraints) Performing minimization step: 3881. Total energy = 6454.3311 kcal/mol (6446.0581 without restraints) Performing minimization step: 3882. Total energy = 6453.3468 kcal/mol (6445.0751 without restraints) Performing minimization step: 3883. Total energy = 6452.3633 kcal/mol (6444.0930 without restraints) Performing minimization step: 3884. Total energy = 6451.3805 kcal/mol (6443.1113 without restraints) Performing minimization step: 3885. Total energy = 6450.3976 kcal/mol (6442.1296 without restraints) Performing minimization step: 3886. Total energy = 6449.4157 kcal/mol (6441.1491 without restraints) Performing minimization step: 3887. Total energy = 6448.4349 kcal/mol (6440.1696 without restraints) Performing minimization step: 3888. Total energy = 6447.4547 kcal/mol (6439.1907 without restraints) Performing minimization step: 3889. Total energy = 6446.4750 kcal/mol (6438.2122 without restraints) Performing minimization step: 3890. Total energy = 6445.4958 kcal/mol (6437.2343 without restraints) Performing minimization step: 3891. Total energy = 6444.5173 kcal/mol (6436.2570 without restraints) Performing minimization step: 3892. Total energy = 6443.5394 kcal/mol (6435.2804 without restraints) Performing minimization step: 3893. Total energy = 6442.5623 kcal/mol (6434.3045 without restraints) Performing minimization step: 3894. Total energy = 6441.5856 kcal/mol (6433.3292 without restraints) Performing minimization step: 3895. Total energy = 6440.6097 kcal/mol (6432.3544 without restraints) Performing minimization step: 3896. Total energy = 6439.6345 kcal/mol (6431.3804 without restraints) Performing minimization step: 3897. Total energy = 6438.6597 kcal/mol (6430.4070 without restraints) Performing minimization step: 3898. Total energy = 6437.6856 kcal/mol (6429.4342 without restraints) Performing minimization step: 3899. Total energy = 6436.7120 kcal/mol (6428.4619 without restraints) Performing minimization step: 3900. Total energy = 6435.7392 kcal/mol (6427.4903 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 6434.7667 kcal/mol (6426.5191 without restraints) Performing minimization step: 3902. Total energy = 6433.7950 kcal/mol (6425.5486 without restraints) Performing minimization step: 3903. Total energy = 6432.8242 kcal/mol (6424.5791 without restraints) Performing minimization step: 3904. Total energy = 6431.8537 kcal/mol (6423.6099 without restraints) Performing minimization step: 3905. Total energy = 6430.8847 kcal/mol (6422.6422 without restraints) Performing minimization step: 3906. Total energy = 6429.9158 kcal/mol (6421.6745 without restraints) Performing minimization step: 3907. Total energy = 6428.9470 kcal/mol (6420.7070 without restraints) Performing minimization step: 3908. Total energy = 6427.9790 kcal/mol (6419.7403 without restraints) Performing minimization step: 3909. Total energy = 6427.0119 kcal/mol (6418.7746 without restraints) Performing minimization step: 3910. Total energy = 6426.0453 kcal/mol (6417.8091 without restraints) Performing minimization step: 3911. Total energy = 6425.0792 kcal/mol (6416.8442 without restraints) Performing minimization step: 3912. Total energy = 6424.1140 kcal/mol (6415.8803 without restraints) Performing minimization step: 3913. Total energy = 6423.1491 kcal/mol (6414.9167 without restraints) Performing minimization step: 3914. Total energy = 6422.1851 kcal/mol (6413.9540 without restraints) Performing minimization step: 3915. Total energy = 6421.2214 kcal/mol (6412.9916 without restraints) Performing minimization step: 3916. Total energy = 6420.2584 kcal/mol (6412.0298 without restraints) Performing minimization step: 3917. Total energy = 6419.2959 kcal/mol (6411.0685 without restraints) Performing minimization step: 3918. Total energy = 6418.3336 kcal/mol (6410.1075 without restraints) Performing minimization step: 3919. Total energy = 6417.3725 kcal/mol (6409.1477 without restraints) Performing minimization step: 3920. Total energy = 6416.4120 kcal/mol (6408.1884 without restraints) Performing minimization step: 3921. Total energy = 6415.4520 kcal/mol (6407.2296 without restraints) Performing minimization step: 3922. Total energy = 6414.4925 kcal/mol (6406.2714 without restraints) Performing minimization step: 3923. Total energy = 6413.5334 kcal/mol (6405.3136 without restraints) Performing minimization step: 3924. Total energy = 6412.5753 kcal/mol (6404.3570 without restraints) Performing minimization step: 3925. Total energy = 6411.6176 kcal/mol (6403.4003 without restraints) Performing minimization step: 3926. Total energy = 6410.6602 kcal/mol (6402.4442 without restraints) Performing minimization step: 3927. Total energy = 6409.7037 kcal/mol (6401.4890 without restraints) Performing minimization step: 3928. Total energy = 6408.7479 kcal/mol (6400.5344 without restraints) Performing minimization step: 3929. Total energy = 6407.7926 kcal/mol (6399.5804 without restraints) Performing minimization step: 3930. Total energy = 6406.8378 kcal/mol (6398.6271 without restraints) Performing minimization step: 3931. Total energy = 6405.8836 kcal/mol (6397.6739 without restraints) Performing minimization step: 3932. Total energy = 6404.9300 kcal/mol (6396.7215 without restraints) Performing minimization step: 3933. Total energy = 6403.9769 kcal/mol (6395.7699 without restraints) Performing minimization step: 3934. Total energy = 6403.0243 kcal/mol (6394.8184 without restraints) Performing minimization step: 3935. Total energy = 6402.0723 kcal/mol (6393.8677 without restraints) Performing minimization step: 3936. Total energy = 6401.1206 kcal/mol (6392.9172 without restraints) Performing minimization step: 3937. Total energy = 6400.1696 kcal/mol (6391.9675 without restraints) Performing minimization step: 3938. Total energy = 6399.2194 kcal/mol (6391.0186 without restraints) Performing minimization step: 3939. Total energy = 6398.2698 kcal/mol (6390.0704 without restraints) Performing minimization step: 3940. Total energy = 6397.3211 kcal/mol (6389.1227 without restraints) Performing minimization step: 3941. Total energy = 6396.3727 kcal/mol (6388.1757 without restraints) Performing minimization step: 3942. Total energy = 6395.4250 kcal/mol (6387.2291 without restraints) Performing minimization step: 3943. Total energy = 6394.4776 kcal/mol (6386.2831 without restraints) Performing minimization step: 3944. Total energy = 6393.5309 kcal/mol (6385.3376 without restraints) Performing minimization step: 3945. Total energy = 6392.5846 kcal/mol (6384.3925 without restraints) Performing minimization step: 3946. Total energy = 6391.6388 kcal/mol (6383.4479 without restraints) Performing minimization step: 3947. Total energy = 6390.6930 kcal/mol (6382.5034 without restraints) Performing minimization step: 3948. Total energy = 6389.7488 kcal/mol (6381.5605 without restraints) Performing minimization step: 3949. Total energy = 6388.8047 kcal/mol (6380.6178 without restraints) Performing minimization step: 3950. Total energy = 6387.8612 kcal/mol (6379.6754 without restraints) Performing minimization step: 3951. Total energy = 6386.9180 kcal/mol (6378.7335 without restraints) Performing minimization step: 3952. Total energy = 6385.9755 kcal/mol (6377.7926 without restraints) Performing minimization step: 3953. Total energy = 6385.0337 kcal/mol (6376.8519 without restraints) Performing minimization step: 3954. Total energy = 6384.0925 kcal/mol (6375.9119 without restraints) Performing minimization step: 3955. Total energy = 6383.1515 kcal/mol (6374.9720 without restraints) Performing minimization step: 3956. Total energy = 6382.2108 kcal/mol (6374.0326 without restraints) Performing minimization step: 3957. Total energy = 6381.2712 kcal/mol (6373.0943 without restraints) Performing minimization step: 3958. Total energy = 6380.3317 kcal/mol (6372.1561 without restraints) Performing minimization step: 3959. Total energy = 6379.3932 kcal/mol (6371.2189 without restraints) Performing minimization step: 3960. Total energy = 6378.4548 kcal/mol (6370.2815 without restraints) Performing minimization step: 3961. Total energy = 6377.5169 kcal/mol (6369.3450 without restraints) Performing minimization step: 3962. Total energy = 6376.5798 kcal/mol (6368.4091 without restraints) Performing minimization step: 3963. Total energy = 6375.6429 kcal/mol (6367.4735 without restraints) Performing minimization step: 3964. Total energy = 6374.7065 kcal/mol (6366.5384 without restraints) Performing minimization step: 3965. Total energy = 6373.7711 kcal/mol (6365.6042 without restraints) Performing minimization step: 3966. Total energy = 6372.8361 kcal/mol (6364.6704 without restraints) Performing minimization step: 3967. Total energy = 6371.9015 kcal/mol (6363.7372 without restraints) Performing minimization step: 3968. Total energy = 6370.9674 kcal/mol (6362.8043 without restraints) Performing minimization step: 3969. Total energy = 6370.0337 kcal/mol (6361.8718 without restraints) Performing minimization step: 3970. Total energy = 6369.1007 kcal/mol (6360.9399 without restraints) Performing minimization step: 3971. Total energy = 6368.1678 kcal/mol (6360.0084 without restraints) Performing minimization step: 3972. Total energy = 6367.2358 kcal/mol (6359.0776 without restraints) Performing minimization step: 3973. Total energy = 6366.3040 kcal/mol (6358.1471 without restraints) Performing minimization step: 3974. Total energy = 6365.3729 kcal/mol (6357.2172 without restraints) Performing minimization step: 3975. Total energy = 6364.4421 kcal/mol (6356.2877 without restraints) Performing minimization step: 3976. Total energy = 6363.5120 kcal/mol (6355.3589 without restraints) Performing minimization step: 3977. Total energy = 6362.5832 kcal/mol (6354.4313 without restraints) Performing minimization step: 3978. Total energy = 6361.6545 kcal/mol (6353.5038 without restraints) Performing minimization step: 3979. Total energy = 6360.7259 kcal/mol (6352.5765 without restraints) Performing minimization step: 3980. Total energy = 6359.7981 kcal/mol (6351.6500 without restraints) Performing minimization step: 3981. Total energy = 6358.8704 kcal/mol (6350.7235 without restraints) Performing minimization step: 3982. Total energy = 6357.9437 kcal/mol (6349.7981 without restraints) Performing minimization step: 3983. Total energy = 6357.0175 kcal/mol (6348.8731 without restraints) Performing minimization step: 3984. Total energy = 6356.0914 kcal/mol (6347.9484 without restraints) Performing minimization step: 3985. Total energy = 6355.1663 kcal/mol (6347.0245 without restraints) Performing minimization step: 3986. Total energy = 6354.2412 kcal/mol (6346.1006 without restraints) Performing minimization step: 3987. Total energy = 6353.3165 kcal/mol (6345.1771 without restraints) Performing minimization step: 3988. Total energy = 6352.3923 kcal/mol (6344.2543 without restraints) Performing minimization step: 3989. Total energy = 6351.4691 kcal/mol (6343.3324 without restraints) Performing minimization step: 3990. Total energy = 6350.5463 kcal/mol (6342.4107 without restraints) Performing minimization step: 3991. Total energy = 6349.6237 kcal/mol (6341.4893 without restraints) Performing minimization step: 3992. Total energy = 6348.7015 kcal/mol (6340.5684 without restraints) Performing minimization step: 3993. Total energy = 6347.7800 kcal/mol (6339.6482 without restraints) Performing minimization step: 3994. Total energy = 6346.8589 kcal/mol (6338.7283 without restraints) Performing minimization step: 3995. Total energy = 6345.9383 kcal/mol (6337.8090 without restraints) Performing minimization step: 3996. Total energy = 6345.0181 kcal/mol (6336.8899 without restraints) Performing minimization step: 3997. Total energy = 6344.0983 kcal/mol (6335.9714 without restraints) Performing minimization step: 3998. Total energy = 6343.1794 kcal/mol (6335.0539 without restraints) Performing minimization step: 3999. Total energy = 6342.2615 kcal/mol (6334.1371 without restraints) Performing minimization step: 4000. Total energy = 6341.3432 kcal/mol (6333.2200 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 6340.4263 kcal/mol (6332.3045 without restraints) Performing minimization step: 4002. Total energy = 6339.5097 kcal/mol (6331.3891 without restraints) Performing minimization step: 4003. Total energy = 6338.5931 kcal/mol (6330.4737 without restraints) Performing minimization step: 4004. Total energy = 6337.6767 kcal/mol (6329.5586 without restraints) Performing minimization step: 4005. Total energy = 6336.7608 kcal/mol (6328.6439 without restraints) Performing minimization step: 4006. Total energy = 6335.8454 kcal/mol (6327.7297 without restraints) Performing minimization step: 4007. Total energy = 6334.9306 kcal/mol (6326.8163 without restraints) Performing minimization step: 4008. Total energy = 6334.0162 kcal/mol (6325.9030 without restraints) Performing minimization step: 4009. Total energy = 6333.1022 kcal/mol (6324.9902 without restraints) Performing minimization step: 4010. Total energy = 6332.1895 kcal/mol (6324.0788 without restraints) Performing minimization step: 4011. Total energy = 6331.2772 kcal/mol (6323.1677 without restraints) Performing minimization step: 4012. Total energy = 6330.3645 kcal/mol (6322.2563 without restraints) Performing minimization step: 4013. Total energy = 6329.4529 kcal/mol (6321.3459 without restraints) Performing minimization step: 4014. Total energy = 6328.5413 kcal/mol (6320.4356 without restraints) Performing minimization step: 4015. Total energy = 6327.6301 kcal/mol (6319.5256 without restraints) Performing minimization step: 4016. Total energy = 6326.7197 kcal/mol (6318.6165 without restraints) Performing minimization step: 4017. Total energy = 6325.8094 kcal/mol (6317.7074 without restraints) Performing minimization step: 4018. Total energy = 6324.8997 kcal/mol (6316.7990 without restraints) Performing minimization step: 4019. Total energy = 6323.9905 kcal/mol (6315.8910 without restraints) Performing minimization step: 4020. Total energy = 6323.0815 kcal/mol (6314.9832 without restraints) Performing minimization step: 4021. Total energy = 6322.1729 kcal/mol (6314.0759 without restraints) Performing minimization step: 4022. Total energy = 6321.2653 kcal/mol (6313.1695 without restraints) Performing minimization step: 4023. Total energy = 6320.3577 kcal/mol (6312.2631 without restraints) Performing minimization step: 4024. Total energy = 6319.4505 kcal/mol (6311.3571 without restraints) Performing minimization step: 4025. Total energy = 6318.5437 kcal/mol (6310.4516 without restraints) Performing minimization step: 4026. Total energy = 6317.6374 kcal/mol (6309.5465 without restraints) Performing minimization step: 4027. Total energy = 6316.7315 kcal/mol (6308.6419 without restraints) Performing minimization step: 4028. Total energy = 6315.8261 kcal/mol (6307.7377 without restraints) Performing minimization step: 4029. Total energy = 6314.9208 kcal/mol (6306.8337 without restraints) Performing minimization step: 4030. Total energy = 6314.0162 kcal/mol (6305.9302 without restraints) Performing minimization step: 4031. Total energy = 6313.1119 kcal/mol (6305.0273 without restraints) Performing minimization step: 4032. Total energy = 6312.2085 kcal/mol (6304.1252 without restraints) Performing minimization step: 4033. Total energy = 6311.3053 kcal/mol (6303.2231 without restraints) Performing minimization step: 4034. Total energy = 6310.4022 kcal/mol (6302.3213 without restraints) Performing minimization step: 4035. Total energy = 6309.5005 kcal/mol (6301.4208 without restraints) Performing minimization step: 4036. Total energy = 6308.5987 kcal/mol (6300.5204 without restraints) Performing minimization step: 4037. Total energy = 6307.6975 kcal/mol (6299.6203 without restraints) Performing minimization step: 4038. Total energy = 6306.7966 kcal/mol (6298.7206 without restraints) Performing minimization step: 4039. Total energy = 6305.8962 kcal/mol (6297.8214 without restraints) Performing minimization step: 4040. Total energy = 6304.9960 kcal/mol (6296.9224 without restraints) Performing minimization step: 4041. Total energy = 6304.0962 kcal/mol (6296.0239 without restraints) Performing minimization step: 4042. Total energy = 6303.1968 kcal/mol (6295.1258 without restraints) Performing minimization step: 4043. Total energy = 6302.2987 kcal/mol (6294.2289 without restraints) Performing minimization step: 4044. Total energy = 6301.4000 kcal/mol (6293.3315 without restraints) Performing minimization step: 4045. Total energy = 6300.5019 kcal/mol (6292.4346 without restraints) Performing minimization step: 4046. Total energy = 6299.6049 kcal/mol (6291.5389 without restraints) Performing minimization step: 4047. Total energy = 6298.7075 kcal/mol (6290.6426 without restraints) Performing minimization step: 4048. Total energy = 6297.8106 kcal/mol (6289.7470 without restraints) Performing minimization step: 4049. Total energy = 6296.9139 kcal/mol (6288.8515 without restraints) Performing minimization step: 4050. Total energy = 6296.0175 kcal/mol (6287.9564 without restraints) Performing minimization step: 4051. Total energy = 6295.1223 kcal/mol (6287.0624 without restraints) Performing minimization step: 4052. Total energy = 6294.2272 kcal/mol (6286.1686 without restraints) Performing minimization step: 4053. Total energy = 6293.3323 kcal/mol (6285.2749 without restraints) Performing minimization step: 4054. Total energy = 6292.4382 kcal/mol (6284.3820 without restraints) Performing minimization step: 4055. Total energy = 6291.5445 kcal/mol (6283.4897 without restraints) Performing minimization step: 4056. Total energy = 6290.6511 kcal/mol (6282.5973 without restraints) Performing minimization step: 4057. Total energy = 6289.7582 kcal/mol (6281.7056 without restraints) Performing minimization step: 4058. Total energy = 6288.8655 kcal/mol (6280.8142 without restraints) Performing minimization step: 4059. Total energy = 6287.9735 kcal/mol (6279.9236 without restraints) Performing minimization step: 4060. Total energy = 6287.0817 kcal/mol (6279.0329 without restraints) Performing minimization step: 4061. Total energy = 6286.1905 kcal/mol (6278.1430 without restraints) Performing minimization step: 4062. Total energy = 6285.2996 kcal/mol (6277.2534 without restraints) Performing minimization step: 4063. Total energy = 6284.4092 kcal/mol (6276.3641 without restraints) Performing minimization step: 4064. Total energy = 6283.5191 kcal/mol (6275.4752 without restraints) Performing minimization step: 4065. Total energy = 6282.6292 kcal/mol (6274.5865 without restraints) Performing minimization step: 4066. Total energy = 6281.7399 kcal/mol (6273.6984 without restraints) Performing minimization step: 4067. Total energy = 6280.8510 kcal/mol (6272.8107 without restraints) Performing minimization step: 4068. Total energy = 6279.9624 kcal/mol (6271.9234 without restraints) Performing minimization step: 4069. Total energy = 6279.0741 kcal/mol (6271.0363 without restraints) Performing minimization step: 4070. Total energy = 6278.1862 kcal/mol (6270.1496 without restraints) Performing minimization step: 4071. Total energy = 6277.2991 kcal/mol (6269.2638 without restraints) Performing minimization step: 4072. Total energy = 6276.4112 kcal/mol (6268.3770 without restraints) Performing minimization step: 4073. Total energy = 6275.5248 kcal/mol (6267.4919 without restraints) Performing minimization step: 4074. Total energy = 6274.6392 kcal/mol (6266.6076 without restraints) Performing minimization step: 4075. Total energy = 6273.7535 kcal/mol (6265.7231 without restraints) Performing minimization step: 4076. Total energy = 6272.8681 kcal/mol (6264.8388 without restraints) Performing minimization step: 4077. Total energy = 6271.9827 kcal/mol (6263.9547 without restraints) Performing minimization step: 4078. Total energy = 6271.0980 kcal/mol (6263.0712 without restraints) Performing minimization step: 4079. Total energy = 6270.2137 kcal/mol (6262.1881 without restraints) Performing minimization step: 4080. Total energy = 6269.3293 kcal/mol (6261.3049 without restraints) Performing minimization step: 4081. Total energy = 6268.4457 kcal/mol (6260.4226 without restraints) Performing minimization step: 4082. Total energy = 6267.5624 kcal/mol (6259.5405 without restraints) Performing minimization step: 4083. Total energy = 6266.6800 kcal/mol (6258.6594 without restraints) Performing minimization step: 4084. Total energy = 6265.7978 kcal/mol (6257.7784 without restraints) Performing minimization step: 4085. Total energy = 6264.9159 kcal/mol (6256.8977 without restraints) Performing minimization step: 4086. Total energy = 6264.0341 kcal/mol (6256.0172 without restraints) Performing minimization step: 4087. Total energy = 6263.1527 kcal/mol (6255.1369 without restraints) Performing minimization step: 4088. Total energy = 6262.2719 kcal/mol (6254.2573 without restraints) Performing minimization step: 4089. Total energy = 6261.3912 kcal/mol (6253.3778 without restraints) Performing minimization step: 4090. Total energy = 6260.5112 kcal/mol (6252.4993 without restraints) Performing minimization step: 4091. Total energy = 6259.6321 kcal/mol (6251.6213 without restraints) Performing minimization step: 4092. Total energy = 6258.7525 kcal/mol (6250.7427 without restraints) Performing minimization step: 4093. Total energy = 6257.8737 kcal/mol (6249.8655 without restraints) Performing minimization step: 4094. Total energy = 6256.9952 kcal/mol (6248.9881 without restraints) Performing minimization step: 4095. Total energy = 6256.1171 kcal/mol (6248.1111 without restraints) Performing minimization step: 4096. Total energy = 6255.2391 kcal/mol (6247.2344 without restraints) Performing minimization step: 4097. Total energy = 6254.3615 kcal/mol (6246.3580 without restraints) Performing minimization step: 4098. Total energy = 6253.4844 kcal/mol (6245.4821 without restraints) Performing minimization step: 4099. Total energy = 6252.6076 kcal/mol (6244.6065 without restraints) Performing minimization step: 4100. Total energy = 6251.7313 kcal/mol (6243.7313 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 6250.8551 kcal/mol (6242.8565 without restraints) Performing minimization step: 4102. Total energy = 6249.9794 kcal/mol (6241.9820 without restraints) Performing minimization step: 4103. Total energy = 6249.1036 kcal/mol (6241.1073 without restraints) Performing minimization step: 4104. Total energy = 6248.2283 kcal/mol (6240.2333 without restraints) Performing minimization step: 4105. Total energy = 6247.3537 kcal/mol (6239.3600 without restraints) Performing minimization step: 4106. Total energy = 6246.4794 kcal/mol (6238.4866 without restraints) Performing minimization step: 4107. Total energy = 6245.6054 kcal/mol (6237.6139 without restraints) Performing minimization step: 4108. Total energy = 6244.7318 kcal/mol (6236.7416 without restraints) Performing minimization step: 4109. Total energy = 6243.8584 kcal/mol (6235.8694 without restraints) Performing minimization step: 4110. Total energy = 6242.9853 kcal/mol (6234.9975 without restraints) Performing minimization step: 4111. Total energy = 6242.1127 kcal/mol (6234.1264 without restraints) Performing minimization step: 4112. Total energy = 6241.2404 kcal/mol (6233.2551 without restraints) Performing minimization step: 4113. Total energy = 6240.3684 kcal/mol (6232.3845 without restraints) Performing minimization step: 4114. Total energy = 6239.4970 kcal/mol (6231.5141 without restraints) Performing minimization step: 4115. Total energy = 6238.6257 kcal/mol (6230.6441 without restraints) Performing minimization step: 4116. Total energy = 6237.7554 kcal/mol (6229.7750 without restraints) Performing minimization step: 4117. Total energy = 6236.8850 kcal/mol (6228.9058 without restraints) Performing minimization step: 4118. Total energy = 6236.0146 kcal/mol (6228.0365 without restraints) Performing minimization step: 4119. Total energy = 6235.1447 kcal/mol (6227.1678 without restraints) Performing minimization step: 4120. Total energy = 6234.2751 kcal/mol (6226.2995 without restraints) Performing minimization step: 4121. Total energy = 6233.4065 kcal/mol (6225.4320 without restraints) Performing minimization step: 4122. Total energy = 6232.5379 kcal/mol (6224.5647 without restraints) Performing minimization step: 4123. Total energy = 6231.6694 kcal/mol (6223.6974 without restraints) Performing minimization step: 4124. Total energy = 6230.8016 kcal/mol (6222.8309 without restraints) Performing minimization step: 4125. Total energy = 6229.9338 kcal/mol (6221.9642 without restraints) Performing minimization step: 4126. Total energy = 6229.0671 kcal/mol (6221.0987 without restraints) Performing minimization step: 4127. Total energy = 6228.2003 kcal/mol (6220.2332 without restraints) Performing minimization step: 4128. Total energy = 6227.3338 kcal/mol (6219.3679 without restraints) Performing minimization step: 4129. Total energy = 6226.4674 kcal/mol (6218.5027 without restraints) Performing minimization step: 4130. Total energy = 6225.6014 kcal/mol (6217.6379 without restraints) Performing minimization step: 4131. Total energy = 6224.7358 kcal/mol (6216.7735 without restraints) Performing minimization step: 4132. Total energy = 6223.8704 kcal/mol (6215.9093 without restraints) Performing minimization step: 4133. Total energy = 6223.0057 kcal/mol (6215.0458 without restraints) Performing minimization step: 4134. Total energy = 6222.1410 kcal/mol (6214.1823 without restraints) Performing minimization step: 4135. Total energy = 6221.2768 kcal/mol (6213.3193 without restraints) Performing minimization step: 4136. Total energy = 6220.4128 kcal/mol (6212.4565 without restraints) Performing minimization step: 4137. Total energy = 6219.5491 kcal/mol (6211.5940 without restraints) Performing minimization step: 4138. Total energy = 6218.6857 kcal/mol (6210.7319 without restraints) Performing minimization step: 4139. Total energy = 6217.8229 kcal/mol (6209.8702 without restraints) Performing minimization step: 4140. Total energy = 6216.9605 kcal/mol (6209.0092 without restraints) Performing minimization step: 4141. Total energy = 6216.0989 kcal/mol (6208.1487 without restraints) Performing minimization step: 4142. Total energy = 6215.2372 kcal/mol (6207.2882 without restraints) Performing minimization step: 4143. Total energy = 6214.3761 kcal/mol (6206.4283 without restraints) Performing minimization step: 4144. Total energy = 6213.5152 kcal/mol (6205.5688 without restraints) Performing minimization step: 4145. Total energy = 6212.6541 kcal/mol (6204.7085 without restraints) Performing minimization step: 4146. Total energy = 6211.7933 kcal/mol (6203.8491 without restraints) Performing minimization step: 4147. Total energy = 6210.9339 kcal/mol (6202.9909 without restraints) Performing minimization step: 4148. Total energy = 6210.0736 kcal/mol (6202.1320 without restraints) Performing minimization step: 4149. Total energy = 6209.2140 kcal/mol (6201.2734 without restraints) Performing minimization step: 4150. Total energy = 6208.3552 kcal/mol (6200.4160 without restraints) Performing minimization step: 4151. Total energy = 6207.4967 kcal/mol (6199.5586 without restraints) Performing minimization step: 4152. Total energy = 6206.6381 kcal/mol (6198.7011 without restraints) Performing minimization step: 4153. Total energy = 6205.7798 kcal/mol (6197.8440 without restraints) Performing minimization step: 4154. Total energy = 6204.9219 kcal/mol (6196.9874 without restraints) Performing minimization step: 4155. Total energy = 6204.0643 kcal/mol (6196.1310 without restraints) Performing minimization step: 4156. Total energy = 6203.2073 kcal/mol (6195.2754 without restraints) Performing minimization step: 4157. Total energy = 6202.3509 kcal/mol (6194.4199 without restraints) Performing minimization step: 4158. Total energy = 6201.4943 kcal/mol (6193.5646 without restraints) Performing minimization step: 4159. Total energy = 6200.6386 kcal/mol (6192.7101 without restraints) Performing minimization step: 4160. Total energy = 6199.7828 kcal/mol (6191.8555 without restraints) Performing minimization step: 4161. Total energy = 6198.9272 kcal/mol (6191.0011 without restraints) Performing minimization step: 4162. Total energy = 6198.0725 kcal/mol (6190.1476 without restraints) Performing minimization step: 4163. Total energy = 6197.2178 kcal/mol (6189.2942 without restraints) Performing minimization step: 4164. Total energy = 6196.3634 kcal/mol (6188.4409 without restraints) Performing minimization step: 4165. Total energy = 6195.5093 kcal/mol (6187.5880 without restraints) Performing minimization step: 4166. Total energy = 6194.6558 kcal/mol (6186.7358 without restraints) Performing minimization step: 4167. Total energy = 6193.8023 kcal/mol (6185.8834 without restraints) Performing minimization step: 4168. Total energy = 6192.9494 kcal/mol (6185.0318 without restraints) Performing minimization step: 4169. Total energy = 6192.0967 kcal/mol (6184.1802 without restraints) Performing minimization step: 4170. Total energy = 6191.2443 kcal/mol (6183.3290 without restraints) Performing minimization step: 4171. Total energy = 6190.3923 kcal/mol (6182.4781 without restraints) Performing minimization step: 4172. Total energy = 6189.5406 kcal/mol (6181.6278 without restraints) Performing minimization step: 4173. Total energy = 6188.6893 kcal/mol (6180.7777 without restraints) Performing minimization step: 4174. Total energy = 6187.8388 kcal/mol (6179.9288 without restraints) Performing minimization step: 4175. Total energy = 6186.9889 kcal/mol (6179.0797 without restraints) Performing minimization step: 4176. Total energy = 6186.1387 kcal/mol (6178.2306 without restraints) Performing minimization step: 4177. Total energy = 6185.2887 kcal/mol (6177.3818 without restraints) Performing minimization step: 4178. Total energy = 6184.4390 kcal/mol (6176.5334 without restraints) Performing minimization step: 4179. Total energy = 6183.5895 kcal/mol (6175.6851 without restraints) Performing minimization step: 4180. Total energy = 6182.7411 kcal/mol (6174.8379 without restraints) Performing minimization step: 4181. Total energy = 6181.8928 kcal/mol (6173.9907 without restraints) Performing minimization step: 4182. Total energy = 6181.0447 kcal/mol (6173.1439 without restraints) Performing minimization step: 4183. Total energy = 6180.1970 kcal/mol (6172.2974 without restraints) Performing minimization step: 4184. Total energy = 6179.3495 kcal/mol (6171.4511 without restraints) Performing minimization step: 4185. Total energy = 6178.5026 kcal/mol (6170.6054 without restraints) Performing minimization step: 4186. Total energy = 6177.6560 kcal/mol (6169.7600 without restraints) Performing minimization step: 4187. Total energy = 6176.8098 kcal/mol (6168.9153 without restraints) Performing minimization step: 4188. Total energy = 6175.9639 kcal/mol (6168.0703 without restraints) Performing minimization step: 4189. Total energy = 6175.1186 kcal/mol (6167.2262 without restraints) Performing minimization step: 4190. Total energy = 6174.2732 kcal/mol (6166.3820 without restraints) Performing minimization step: 4191. Total energy = 6173.4283 kcal/mol (6165.5384 without restraints) Performing minimization step: 4192. Total energy = 6172.5843 kcal/mol (6164.6955 without restraints) Performing minimization step: 4193. Total energy = 6171.7402 kcal/mol (6163.8526 without restraints) Performing minimization step: 4194. Total energy = 6170.8964 kcal/mol (6163.0100 without restraints) Performing minimization step: 4195. Total energy = 6170.0532 kcal/mol (6162.1680 without restraints) Performing minimization step: 4196. Total energy = 6169.2103 kcal/mol (6161.3263 without restraints) Performing minimization step: 4197. Total energy = 6168.3675 kcal/mol (6160.4847 without restraints) Performing minimization step: 4198. Total energy = 6167.5252 kcal/mol (6159.6436 without restraints) Performing minimization step: 4199. Total energy = 6166.6833 kcal/mol (6158.8030 without restraints) Performing minimization step: 4200. Total energy = 6165.8418 kcal/mol (6157.9628 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 6165.0005 kcal/mol (6157.1225 without restraints) Performing minimization step: 4202. Total energy = 6164.1598 kcal/mol (6156.2830 without restraints) Performing minimization step: 4203. Total energy = 6163.3194 kcal/mol (6155.4439 without restraints) Performing minimization step: 4204. Total energy = 6162.4795 kcal/mol (6154.6051 without restraints) Performing minimization step: 4205. Total energy = 6161.6400 kcal/mol (6153.7668 without restraints) Performing minimization step: 4206. Total energy = 6160.8006 kcal/mol (6152.9287 without restraints) Performing minimization step: 4207. Total energy = 6159.9617 kcal/mol (6152.0911 without restraints) Performing minimization step: 4208. Total energy = 6159.1230 kcal/mol (6151.2534 without restraints) Performing minimization step: 4209. Total energy = 6158.2844 kcal/mol (6150.4160 without restraints) Performing minimization step: 4210. Total energy = 6157.4465 kcal/mol (6149.5794 without restraints) Performing minimization step: 4211. Total energy = 6156.6089 kcal/mol (6148.7431 without restraints) Performing minimization step: 4212. Total energy = 6155.7722 kcal/mol (6147.9075 without restraints) Performing minimization step: 4213. Total energy = 6154.9360 kcal/mol (6147.0725 without restraints) Performing minimization step: 4214. Total energy = 6154.0997 kcal/mol (6146.2374 without restraints) Performing minimization step: 4215. Total energy = 6153.2637 kcal/mol (6145.4026 without restraints) Performing minimization step: 4216. Total energy = 6152.4281 kcal/mol (6144.5682 without restraints) Performing minimization step: 4217. Total energy = 6151.5929 kcal/mol (6143.7342 without restraints) Performing minimization step: 4218. Total energy = 6150.7583 kcal/mol (6142.9008 without restraints) Performing minimization step: 4219. Total energy = 6149.9238 kcal/mol (6142.0674 without restraints) Performing minimization step: 4220. Total energy = 6149.0893 kcal/mol (6141.2342 without restraints) Performing minimization step: 4221. Total energy = 6148.2559 kcal/mol (6140.4020 without restraints) Performing minimization step: 4222. Total energy = 6147.4230 kcal/mol (6139.5704 without restraints) Performing minimization step: 4223. Total energy = 6146.5902 kcal/mol (6138.7387 without restraints) Performing minimization step: 4224. Total energy = 6145.7579 kcal/mol (6137.9075 without restraints) Performing minimization step: 4225. Total energy = 6144.9262 kcal/mol (6137.0771 without restraints) Performing minimization step: 4226. Total energy = 6144.0946 kcal/mol (6136.2467 without restraints) Performing minimization step: 4227. Total energy = 6143.2635 kcal/mol (6135.4168 without restraints) Performing minimization step: 4228. Total energy = 6142.4325 kcal/mol (6134.5870 without restraints) Performing minimization step: 4229. Total energy = 6141.6025 kcal/mol (6133.7582 without restraints) Performing minimization step: 4230. Total energy = 6140.7731 kcal/mol (6132.9302 without restraints) Performing minimization step: 4231. Total energy = 6139.9438 kcal/mol (6132.1021 without restraints) Performing minimization step: 4232. Total energy = 6139.1155 kcal/mol (6131.2749 without restraints) Performing minimization step: 4233. Total energy = 6138.2869 kcal/mol (6130.4475 without restraints) Performing minimization step: 4234. Total energy = 6137.4590 kcal/mol (6129.6208 without restraints) Performing minimization step: 4235. Total energy = 6136.6313 kcal/mol (6128.7942 without restraints) Performing minimization step: 4236. Total energy = 6135.8041 kcal/mol (6127.9683 without restraints) Performing minimization step: 4237. Total energy = 6134.9771 kcal/mol (6127.1424 without restraints) Performing minimization step: 4238. Total energy = 6134.1505 kcal/mol (6126.3171 without restraints) Performing minimization step: 4239. Total energy = 6133.3246 kcal/mol (6125.4924 without restraints) Performing minimization step: 4240. Total energy = 6132.4992 kcal/mol (6124.6682 without restraints) Performing minimization step: 4241. Total energy = 6131.6744 kcal/mol (6123.8446 without restraints) Performing minimization step: 4242. Total energy = 6130.8507 kcal/mol (6123.0221 without restraints) Performing minimization step: 4243. Total energy = 6130.0268 kcal/mol (6122.1994 without restraints) Performing minimization step: 4244. Total energy = 6129.2034 kcal/mol (6121.3773 without restraints) Performing minimization step: 4245. Total energy = 6128.3800 kcal/mol (6120.5551 without restraints) Performing minimization step: 4246. Total energy = 6127.5571 kcal/mol (6119.7333 without restraints) Performing minimization step: 4247. Total energy = 6126.7349 kcal/mol (6118.9124 without restraints) Performing minimization step: 4248. Total energy = 6125.9128 kcal/mol (6118.0915 without restraints) Performing minimization step: 4249. Total energy = 6125.0912 kcal/mol (6117.2711 without restraints) Performing minimization step: 4250. Total energy = 6124.2702 kcal/mol (6116.4513 without restraints) Performing minimization step: 4251. Total energy = 6123.4498 kcal/mol (6115.6321 without restraints) Performing minimization step: 4252. Total energy = 6122.6297 kcal/mol (6114.8132 without restraints) Performing minimization step: 4253. Total energy = 6121.8103 kcal/mol (6113.9950 without restraints) Performing minimization step: 4254. Total energy = 6120.9913 kcal/mol (6113.1773 without restraints) Performing minimization step: 4255. Total energy = 6120.1728 kcal/mol (6112.3600 without restraints) Performing minimization step: 4256. Total energy = 6119.3544 kcal/mol (6111.5429 without restraints) Performing minimization step: 4257. Total energy = 6118.5369 kcal/mol (6110.7266 without restraints) Performing minimization step: 4258. Total energy = 6117.7195 kcal/mol (6109.9104 without restraints) Performing minimization step: 4259. Total energy = 6116.9031 kcal/mol (6109.0951 without restraints) Performing minimization step: 4260. Total energy = 6116.0867 kcal/mol (6108.2800 without restraints) Performing minimization step: 4261. Total energy = 6115.2707 kcal/mol (6107.4652 without restraints) Performing minimization step: 4262. Total energy = 6114.4552 kcal/mol (6106.6509 without restraints) Performing minimization step: 4263. Total energy = 6113.6405 kcal/mol (6105.8375 without restraints) Performing minimization step: 4264. Total energy = 6112.8265 kcal/mol (6105.0246 without restraints) Performing minimization step: 4265. Total energy = 6112.0128 kcal/mol (6104.2122 without restraints) Performing minimization step: 4266. Total energy = 6111.1999 kcal/mol (6103.4004 without restraints) Performing minimization step: 4267. Total energy = 6110.3868 kcal/mol (6102.5885 without restraints) Performing minimization step: 4268. Total energy = 6109.5744 kcal/mol (6101.7774 without restraints) Performing minimization step: 4269. Total energy = 6108.7626 kcal/mol (6100.9668 without restraints) Performing minimization step: 4270. Total energy = 6107.9513 kcal/mol (6100.1567 without restraints) Performing minimization step: 4271. Total energy = 6107.1406 kcal/mol (6099.3472 without restraints) Performing minimization step: 4272. Total energy = 6106.3307 kcal/mol (6098.5387 without restraints) Performing minimization step: 4273. Total energy = 6105.5211 kcal/mol (6097.7302 without restraints) Performing minimization step: 4274. Total energy = 6104.7118 kcal/mol (6096.9221 without restraints) Performing minimization step: 4275. Total energy = 6103.9032 kcal/mol (6096.1148 without restraints) Performing minimization step: 4276. Total energy = 6103.0948 kcal/mol (6095.3075 without restraints) Performing minimization step: 4277. Total energy = 6102.2870 kcal/mol (6094.5010 without restraints) Performing minimization step: 4278. Total energy = 6101.4798 kcal/mol (6093.6950 without restraints) Performing minimization step: 4279. Total energy = 6100.6730 kcal/mol (6092.8895 without restraints) Performing minimization step: 4280. Total energy = 6099.8674 kcal/mol (6092.0850 without restraints) Performing minimization step: 4281. Total energy = 6099.0619 kcal/mol (6091.2808 without restraints) Performing minimization step: 4282. Total energy = 6098.2569 kcal/mol (6090.4771 without restraints) Performing minimization step: 4283. Total energy = 6097.4519 kcal/mol (6089.6733 without restraints) Performing minimization step: 4284. Total energy = 6096.6482 kcal/mol (6088.8708 without restraints) Performing minimization step: 4285. Total energy = 6095.8448 kcal/mol (6088.0686 without restraints) Performing minimization step: 4286. Total energy = 6095.0420 kcal/mol (6087.2669 without restraints) Performing minimization step: 4287. Total energy = 6094.2401 kcal/mol (6086.4663 without restraints) Performing minimization step: 4288. Total energy = 6093.4381 kcal/mol (6085.6656 without restraints) Performing minimization step: 4289. Total energy = 6092.6364 kcal/mol (6084.8651 without restraints) Performing minimization step: 4290. Total energy = 6091.8357 kcal/mol (6084.0657 without restraints) Performing minimization step: 4291. Total energy = 6091.0352 kcal/mol (6083.2663 without restraints) Performing minimization step: 4292. Total energy = 6090.2357 kcal/mol (6082.4680 without restraints) Performing minimization step: 4293. Total energy = 6089.4363 kcal/mol (6081.6698 without restraints) Performing minimization step: 4294. Total energy = 6088.6379 kcal/mol (6080.8727 without restraints) Performing minimization step: 4295. Total energy = 6087.8397 kcal/mol (6080.0758 without restraints) Performing minimization step: 4296. Total energy = 6087.0422 kcal/mol (6079.2794 without restraints) Performing minimization step: 4297. Total energy = 6086.2452 kcal/mol (6078.4838 without restraints) Performing minimization step: 4298. Total energy = 6085.4489 kcal/mol (6077.6886 without restraints) Performing minimization step: 4299. Total energy = 6084.6529 kcal/mol (6076.8939 without restraints) Performing minimization step: 4300. Total energy = 6083.8577 kcal/mol (6076.0999 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 6083.0631 kcal/mol (6075.3065 without restraints) Performing minimization step: 4302. Total energy = 6082.2689 kcal/mol (6074.5137 without restraints) Performing minimization step: 4303. Total energy = 6081.4755 kcal/mol (6073.7214 without restraints) Performing minimization step: 4304. Total energy = 6080.6825 kcal/mol (6072.9297 without restraints) Performing minimization step: 4305. Total energy = 6079.8901 kcal/mol (6072.1384 without restraints) Performing minimization step: 4306. Total energy = 6079.0981 kcal/mol (6071.3478 without restraints) Performing minimization step: 4307. Total energy = 6078.3064 kcal/mol (6070.5572 without restraints) Performing minimization step: 4308. Total energy = 6077.5156 kcal/mol (6069.7676 without restraints) Performing minimization step: 4309. Total energy = 6076.7257 kcal/mol (6068.9789 without restraints) Performing minimization step: 4310. Total energy = 6075.9359 kcal/mol (6068.1904 without restraints) Performing minimization step: 4311. Total energy = 6075.1470 kcal/mol (6067.4028 without restraints) Performing minimization step: 4312. Total energy = 6074.3586 kcal/mol (6066.6156 without restraints) Performing minimization step: 4313. Total energy = 6073.5710 kcal/mol (6065.8292 without restraints) Performing minimization step: 4314. Total energy = 6072.7835 kcal/mol (6065.0430 without restraints) Performing minimization step: 4315. Total energy = 6071.9968 kcal/mol (6064.2575 without restraints) Performing minimization step: 4316. Total energy = 6071.2105 kcal/mol (6063.4725 without restraints) Performing minimization step: 4317. Total energy = 6070.4248 kcal/mol (6062.6880 without restraints) Performing minimization step: 4318. Total energy = 6069.6399 kcal/mol (6061.9043 without restraints) Performing minimization step: 4319. Total energy = 6068.8556 kcal/mol (6061.1212 without restraints) Performing minimization step: 4320. Total energy = 6068.0720 kcal/mol (6060.3389 without restraints) Performing minimization step: 4321. Total energy = 6067.2886 kcal/mol (6059.5567 without restraints) Performing minimization step: 4322. Total energy = 6066.5060 kcal/mol (6058.7754 without restraints) Performing minimization step: 4323. Total energy = 6065.7235 kcal/mol (6057.9941 without restraints) Performing minimization step: 4324. Total energy = 6064.9422 kcal/mol (6057.2140 without restraints) Performing minimization step: 4325. Total energy = 6064.1611 kcal/mol (6056.4342 without restraints) Performing minimization step: 4326. Total energy = 6063.3806 kcal/mol (6055.6549 without restraints) Performing minimization step: 4327. Total energy = 6062.6009 kcal/mol (6054.8765 without restraints) Performing minimization step: 4328. Total energy = 6061.8217 kcal/mol (6054.0986 without restraints) Performing minimization step: 4329. Total energy = 6061.0431 kcal/mol (6053.3212 without restraints) Performing minimization step: 4330. Total energy = 6060.2650 kcal/mol (6052.5443 without restraints) Performing minimization step: 4331. Total energy = 6059.4878 kcal/mol (6051.7687 without restraints) Performing minimization step: 4332. Total energy = 6058.7112 kcal/mol (6050.9930 without restraints) Performing minimization step: 4333. Total energy = 6057.9350 kcal/mol (6050.2180 without restraints) Performing minimization step: 4334. Total energy = 6057.1593 kcal/mol (6049.4436 without restraints) Performing minimization step: 4335. Total energy = 6056.3842 kcal/mol (6048.6698 without restraints) Performing minimization step: 4336. Total energy = 6055.6097 kcal/mol (6047.8965 without restraints) Performing minimization step: 4337. Total energy = 6054.8358 kcal/mol (6047.1238 without restraints) Performing minimization step: 4338. Total energy = 6054.0624 kcal/mol (6046.3517 without restraints) Performing minimization step: 4339. Total energy = 6053.2897 kcal/mol (6045.5802 without restraints) Performing minimization step: 4340. Total energy = 6052.5172 kcal/mol (6044.8087 without restraints) Performing minimization step: 4341. Total energy = 6051.7459 kcal/mol (6044.0390 without restraints) Performing minimization step: 4342. Total energy = 6050.9744 kcal/mol (6043.2687 without restraints) Performing minimization step: 4343. Total energy = 6050.2042 kcal/mol (6042.4997 without restraints) Performing minimization step: 4344. Total energy = 6049.4343 kcal/mol (6041.7310 without restraints) Performing minimization step: 4345. Total energy = 6048.6654 kcal/mol (6040.9634 without restraints) Performing minimization step: 4346. Total energy = 6047.8966 kcal/mol (6040.1958 without restraints) Performing minimization step: 4347. Total energy = 6047.1288 kcal/mol (6039.4293 without restraints) Performing minimization step: 4348. Total energy = 6046.3614 kcal/mol (6038.6631 without restraints) Performing minimization step: 4349. Total energy = 6045.5945 kcal/mol (6037.8975 without restraints) Performing minimization step: 4350. Total energy = 6044.8283 kcal/mol (6037.1326 without restraints) Performing minimization step: 4351. Total energy = 6044.0625 kcal/mol (6036.3679 without restraints) Performing minimization step: 4352. Total energy = 6043.2973 kcal/mol (6035.6040 without restraints) Performing minimization step: 4353. Total energy = 6042.5333 kcal/mol (6034.8413 without restraints) Performing minimization step: 4354. Total energy = 6041.7693 kcal/mol (6034.0786 without restraints) Performing minimization step: 4355. Total energy = 6041.0059 kcal/mol (6033.3164 without restraints) Performing minimization step: 4356. Total energy = 6040.2435 kcal/mol (6032.5553 without restraints) Performing minimization step: 4357. Total energy = 6039.4814 kcal/mol (6031.7944 without restraints) Performing minimization step: 4358. Total energy = 6038.7201 kcal/mol (6031.0344 without restraints) Performing minimization step: 4359. Total energy = 6037.9592 kcal/mol (6030.2748 without restraints) Performing minimization step: 4360. Total energy = 6037.1989 kcal/mol (6029.5157 without restraints) Performing minimization step: 4361. Total energy = 6036.4391 kcal/mol (6028.7571 without restraints) Performing minimization step: 4362. Total energy = 6035.6803 kcal/mol (6027.9996 without restraints) Performing minimization step: 4363. Total energy = 6034.9224 kcal/mol (6027.2431 without restraints) Performing minimization step: 4364. Total energy = 6034.1647 kcal/mol (6026.4865 without restraints) Performing minimization step: 4365. Total energy = 6033.4073 kcal/mol (6025.7304 without restraints) Performing minimization step: 4366. Total energy = 6032.6508 kcal/mol (6024.9752 without restraints) Performing minimization step: 4367. Total energy = 6031.8943 kcal/mol (6024.2199 without restraints) Performing minimization step: 4368. Total energy = 6031.1386 kcal/mol (6023.4655 without restraints) Performing minimization step: 4369. Total energy = 6030.3837 kcal/mol (6022.7118 without restraints) Performing minimization step: 4370. Total energy = 6029.6295 kcal/mol (6021.9587 without restraints) Performing minimization step: 4371. Total energy = 6028.8755 kcal/mol (6021.2061 without restraints) Performing minimization step: 4372. Total energy = 6028.1220 kcal/mol (6020.4538 without restraints) Performing minimization step: 4373. Total energy = 6027.3692 kcal/mol (6019.7023 without restraints) Performing minimization step: 4374. Total energy = 6026.6170 kcal/mol (6018.9514 without restraints) Performing minimization step: 4375. Total energy = 6025.8652 kcal/mol (6018.2009 without restraints) Performing minimization step: 4376. Total energy = 6025.1142 kcal/mol (6017.4511 without restraints) Performing minimization step: 4377. Total energy = 6024.3638 kcal/mol (6016.7020 without restraints) Performing minimization step: 4378. Total energy = 6023.6145 kcal/mol (6015.9540 without restraints) Performing minimization step: 4379. Total energy = 6022.8654 kcal/mol (6015.2061 without restraints) Performing minimization step: 4380. Total energy = 6022.1168 kcal/mol (6014.4588 without restraints) Performing minimization step: 4381. Total energy = 6021.3690 kcal/mol (6013.7123 without restraints) Performing minimization step: 4382. Total energy = 6020.6214 kcal/mol (6012.9659 without restraints) Performing minimization step: 4383. Total energy = 6019.8748 kcal/mol (6012.2206 without restraints) Performing minimization step: 4384. Total energy = 6019.1286 kcal/mol (6011.4756 without restraints) Performing minimization step: 4385. Total energy = 6018.3832 kcal/mol (6010.7315 without restraints) Performing minimization step: 4386. Total energy = 6017.6381 kcal/mol (6009.9876 without restraints) Performing minimization step: 4387. Total energy = 6016.8935 kcal/mol (6009.2443 without restraints) Performing minimization step: 4388. Total energy = 6016.1501 kcal/mol (6008.5022 without restraints) Performing minimization step: 4389. Total energy = 6015.4067 kcal/mol (6007.7600 without restraints) Performing minimization step: 4390. Total energy = 6014.6642 kcal/mol (6007.0188 without restraints) Performing minimization step: 4391. Total energy = 6013.9220 kcal/mol (6006.2778 without restraints) Performing minimization step: 4392. Total energy = 6013.1802 kcal/mol (6005.5373 without restraints) Performing minimization step: 4393. Total energy = 6012.4390 kcal/mol (6004.7974 without restraints) Performing minimization step: 4394. Total energy = 6011.6981 kcal/mol (6004.0577 without restraints) Performing minimization step: 4395. Total energy = 6010.9582 kcal/mol (6003.3191 without restraints) Performing minimization step: 4396. Total energy = 6010.2188 kcal/mol (6002.5810 without restraints) Performing minimization step: 4397. Total energy = 6009.4802 kcal/mol (6001.8436 without restraints) Performing minimization step: 4398. Total energy = 6008.7418 kcal/mol (6001.1064 without restraints) Performing minimization step: 4399. Total energy = 6008.0041 kcal/mol (6000.3701 without restraints) Performing minimization step: 4400. Total energy = 6007.2670 kcal/mol (5999.6342 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 6006.5304 kcal/mol (5998.8989 without restraints) Performing minimization step: 4402. Total energy = 6005.7944 kcal/mol (5998.1641 without restraints) Performing minimization step: 4403. Total energy = 6005.0587 kcal/mol (5997.4297 without restraints) Performing minimization step: 4404. Total energy = 6004.3238 kcal/mol (5996.6960 without restraints) Performing minimization step: 4405. Total energy = 6003.5891 kcal/mol (5995.9625 without restraints) Performing minimization step: 4406. Total energy = 6002.8554 kcal/mol (5995.2304 without restraints) Performing minimization step: 4407. Total energy = 6002.1220 kcal/mol (5994.4980 without restraints) Performing minimization step: 4408. Total energy = 6001.3893 kcal/mol (5993.7666 without restraints) Performing minimization step: 4409. Total energy = 6000.6574 kcal/mol (5993.0360 without restraints) Performing minimization step: 4410. Total energy = 5999.9261 kcal/mol (5992.3060 without restraints) Performing minimization step: 4411. Total energy = 5999.1956 kcal/mol (5991.5768 without restraints) Performing minimization step: 4412. Total energy = 5998.4654 kcal/mol (5990.8478 without restraints) Performing minimization step: 4413. Total energy = 5997.7360 kcal/mol (5990.1198 without restraints) Performing minimization step: 4414. Total energy = 5997.0072 kcal/mol (5989.3921 without restraints) Performing minimization step: 4415. Total energy = 5996.2786 kcal/mol (5988.6649 without restraints) Performing minimization step: 4416. Total energy = 5995.5509 kcal/mol (5987.9385 without restraints) Performing minimization step: 4417. Total energy = 5994.8233 kcal/mol (5987.2121 without restraints) Performing minimization step: 4418. Total energy = 5994.0964 kcal/mol (5986.4864 without restraints) Performing minimization step: 4419. Total energy = 5993.3697 kcal/mol (5985.7609 without restraints) Performing minimization step: 4420. Total energy = 5992.6436 kcal/mol (5985.0363 without restraints) Performing minimization step: 4421. Total energy = 5991.9180 kcal/mol (5984.3119 without restraints) Performing minimization step: 4422. Total energy = 5991.1937 kcal/mol (5983.5888 without restraints) Performing minimization step: 4423. Total energy = 5990.4693 kcal/mol (5982.8657 without restraints) Performing minimization step: 4424. Total energy = 5989.7456 kcal/mol (5982.1433 without restraints) Performing minimization step: 4425. Total energy = 5989.0225 kcal/mol (5981.4215 without restraints) Performing minimization step: 4426. Total energy = 5988.2998 kcal/mol (5980.7002 without restraints) Performing minimization step: 4427. Total energy = 5987.5778 kcal/mol (5979.9793 without restraints) Performing minimization step: 4428. Total energy = 5986.8564 kcal/mol (5979.2592 without restraints) Performing minimization step: 4429. Total energy = 5986.1357 kcal/mol (5978.5398 without restraints) Performing minimization step: 4430. Total energy = 5985.4151 kcal/mol (5977.8204 without restraints) Performing minimization step: 4431. Total energy = 5984.6951 kcal/mol (5977.1016 without restraints) Performing minimization step: 4432. Total energy = 5983.9756 kcal/mol (5976.3834 without restraints) Performing minimization step: 4433. Total energy = 5983.2567 kcal/mol (5975.6659 without restraints) Performing minimization step: 4434. Total energy = 5982.5386 kcal/mol (5974.9491 without restraints) Performing minimization step: 4435. Total energy = 5981.8209 kcal/mol (5974.2326 without restraints) Performing minimization step: 4436. Total energy = 5981.1037 kcal/mol (5973.5166 without restraints) Performing minimization step: 4437. Total energy = 5980.3872 kcal/mol (5972.8014 without restraints) Performing minimization step: 4438. Total energy = 5979.6708 kcal/mol (5972.0863 without restraints) Performing minimization step: 4439. Total energy = 5978.9549 kcal/mol (5971.3717 without restraints) Performing minimization step: 4440. Total energy = 5978.2393 kcal/mol (5970.6572 without restraints) Performing minimization step: 4441. Total energy = 5977.5242 kcal/mol (5969.9436 without restraints) Performing minimization step: 4442. Total energy = 5976.8100 kcal/mol (5969.2306 without restraints) Performing minimization step: 4443. Total energy = 5976.0963 kcal/mol (5968.5182 without restraints) Performing minimization step: 4444. Total energy = 5975.3832 kcal/mol (5967.8064 without restraints) Performing minimization step: 4445. Total energy = 5974.6705 kcal/mol (5967.0949 without restraints) Performing minimization step: 4446. Total energy = 5973.9582 kcal/mol (5966.3839 without restraints) Performing minimization step: 4447. Total energy = 5973.2464 kcal/mol (5965.6734 without restraints) Performing minimization step: 4448. Total energy = 5972.5351 kcal/mol (5964.9634 without restraints) Performing minimization step: 4449. Total energy = 5971.8244 kcal/mol (5964.2539 without restraints) Performing minimization step: 4450. Total energy = 5971.1142 kcal/mol (5963.5450 without restraints) Performing minimization step: 4451. Total energy = 5970.4047 kcal/mol (5962.8368 without restraints) Performing minimization step: 4452. Total energy = 5969.6960 kcal/mol (5962.1295 without restraints) Performing minimization step: 4453. Total energy = 5968.9872 kcal/mol (5961.4219 without restraints) Performing minimization step: 4454. Total energy = 5968.2792 kcal/mol (5960.7152 without restraints) Performing minimization step: 4455. Total energy = 5967.5716 kcal/mol (5960.0089 without restraints) Performing minimization step: 4456. Total energy = 5966.8646 kcal/mol (5959.3032 without restraints) Performing minimization step: 4457. Total energy = 5966.1580 kcal/mol (5958.5978 without restraints) Performing minimization step: 4458. Total energy = 5965.4519 kcal/mol (5957.8928 without restraints) Performing minimization step: 4459. Total energy = 5964.7466 kcal/mol (5957.1890 without restraints) Performing minimization step: 4460. Total energy = 5964.0416 kcal/mol (5956.4853 without restraints) Performing minimization step: 4461. Total energy = 5963.3372 kcal/mol (5955.7822 without restraints) Performing minimization step: 4462. Total energy = 5962.6330 kcal/mol (5955.0792 without restraints) Performing minimization step: 4463. Total energy = 5961.9294 kcal/mol (5954.3768 without restraints) Performing minimization step: 4464. Total energy = 5961.2261 kcal/mol (5953.6748 without restraints) Performing minimization step: 4465. Total energy = 5960.5236 kcal/mol (5952.9736 without restraints) Performing minimization step: 4466. Total energy = 5959.8213 kcal/mol (5952.2726 without restraints) Performing minimization step: 4467. Total energy = 5959.1196 kcal/mol (5951.5722 without restraints) Performing minimization step: 4468. Total energy = 5958.4186 kcal/mol (5950.8725 without restraints) Performing minimization step: 4469. Total energy = 5957.7179 kcal/mol (5950.1730 without restraints) Performing minimization step: 4470. Total energy = 5957.0180 kcal/mol (5949.4745 without restraints) Performing minimization step: 4471. Total energy = 5956.3187 kcal/mol (5948.7766 without restraints) Performing minimization step: 4472. Total energy = 5955.6198 kcal/mol (5948.0787 without restraints) Performing minimization step: 4473. Total energy = 5954.9212 kcal/mol (5947.3815 without restraints) Performing minimization step: 4474. Total energy = 5954.2231 kcal/mol (5946.6848 without restraints) Performing minimization step: 4475. Total energy = 5953.5254 kcal/mol (5945.9883 without restraints) Performing minimization step: 4476. Total energy = 5952.8283 kcal/mol (5945.2924 without restraints) Performing minimization step: 4477. Total energy = 5952.1320 kcal/mol (5944.5974 without restraints) Performing minimization step: 4478. Total energy = 5951.4357 kcal/mol (5943.9025 without restraints) Performing minimization step: 4479. Total energy = 5950.7404 kcal/mol (5943.2084 without restraints) Performing minimization step: 4480. Total energy = 5950.0450 kcal/mol (5942.5142 without restraints) Performing minimization step: 4481. Total energy = 5949.3506 kcal/mol (5941.8213 without restraints) Performing minimization step: 4482. Total energy = 5948.6564 kcal/mol (5941.1282 without restraints) Performing minimization step: 4483. Total energy = 5947.9623 kcal/mol (5940.4355 without restraints) Performing minimization step: 4484. Total energy = 5947.2689 kcal/mol (5939.7433 without restraints) Performing minimization step: 4485. Total energy = 5946.5762 kcal/mol (5939.0519 without restraints) Performing minimization step: 4486. Total energy = 5945.8837 kcal/mol (5938.3607 without restraints) Performing minimization step: 4487. Total energy = 5945.1919 kcal/mol (5937.6702 without restraints) Performing minimization step: 4488. Total energy = 5944.5008 kcal/mol (5936.9804 without restraints) Performing minimization step: 4489. Total energy = 5943.8098 kcal/mol (5936.2906 without restraints) Performing minimization step: 4490. Total energy = 5943.1196 kcal/mol (5935.6019 without restraints) Performing minimization step: 4491. Total energy = 5942.4295 kcal/mol (5934.9130 without restraints) Performing minimization step: 4492. Total energy = 5941.7402 kcal/mol (5934.2250 without restraints) Performing minimization step: 4493. Total energy = 5941.0515 kcal/mol (5933.5377 without restraints) Performing minimization step: 4494. Total energy = 5940.3630 kcal/mol (5932.8503 without restraints) Performing minimization step: 4495. Total energy = 5939.6747 kcal/mol (5932.1633 without restraints) Performing minimization step: 4496. Total energy = 5938.9870 kcal/mol (5931.4769 without restraints) Performing minimization step: 4497. Total energy = 5938.2997 kcal/mol (5930.7909 without restraints) Performing minimization step: 4498. Total energy = 5937.6138 kcal/mol (5930.1063 without restraints) Performing minimization step: 4499. Total energy = 5936.9275 kcal/mol (5929.4213 without restraints) Performing minimization step: 4500. Total energy = 5936.2419 kcal/mol (5928.7371 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 5935.5569 kcal/mol (5928.0534 without restraints) Performing minimization step: 4502. Total energy = 5934.8721 kcal/mol (5927.3697 without restraints) Performing minimization step: 4503. Total energy = 5934.1873 kcal/mol (5926.6863 without restraints) Performing minimization step: 4504. Total energy = 5933.5033 kcal/mol (5926.0035 without restraints) Performing minimization step: 4505. Total energy = 5932.8200 kcal/mol (5925.3215 without restraints) Performing minimization step: 4506. Total energy = 5932.1369 kcal/mol (5924.6399 without restraints) Performing minimization step: 4507. Total energy = 5931.4543 kcal/mol (5923.9585 without restraints) Performing minimization step: 4508. Total energy = 5930.7724 kcal/mol (5923.2778 without restraints) Performing minimization step: 4509. Total energy = 5930.0914 kcal/mol (5922.5981 without restraints) Performing minimization step: 4510. Total energy = 5929.4104 kcal/mol (5921.9184 without restraints) Performing minimization step: 4511. Total energy = 5928.7296 kcal/mol (5921.2390 without restraints) Performing minimization step: 4512. Total energy = 5928.0495 kcal/mol (5920.5601 without restraints) Performing minimization step: 4513. Total energy = 5927.3696 kcal/mol (5919.8814 without restraints) Performing minimization step: 4514. Total energy = 5926.6902 kcal/mol (5919.2034 without restraints) Performing minimization step: 4515. Total energy = 5926.0112 kcal/mol (5918.5257 without restraints) Performing minimization step: 4516. Total energy = 5925.3323 kcal/mol (5917.8481 without restraints) Performing minimization step: 4517. Total energy = 5924.6545 kcal/mol (5917.1715 without restraints) Performing minimization step: 4518. Total energy = 5923.9768 kcal/mol (5916.4951 without restraints) Performing minimization step: 4519. Total energy = 5923.2996 kcal/mol (5915.8192 without restraints) Performing minimization step: 4520. Total energy = 5922.6230 kcal/mol (5915.1439 without restraints) Performing minimization step: 4521. Total energy = 5921.9466 kcal/mol (5914.4688 without restraints) Performing minimization step: 4522. Total energy = 5921.2708 kcal/mol (5913.7943 without restraints) Performing minimization step: 4523. Total energy = 5920.5956 kcal/mol (5913.1205 without restraints) Performing minimization step: 4524. Total energy = 5919.9208 kcal/mol (5912.4471 without restraints) Performing minimization step: 4525. Total energy = 5919.2463 kcal/mol (5911.7738 without restraints) Performing minimization step: 4526. Total energy = 5918.5726 kcal/mol (5911.1013 without restraints) Performing minimization step: 4527. Total energy = 5917.8989 kcal/mol (5910.4290 without restraints) Performing minimization step: 4528. Total energy = 5917.2261 kcal/mol (5909.7575 without restraints) Performing minimization step: 4529. Total energy = 5916.5540 kcal/mol (5909.0866 without restraints) Performing minimization step: 4530. Total energy = 5915.8817 kcal/mol (5908.4156 without restraints) Performing minimization step: 4531. Total energy = 5915.2104 kcal/mol (5907.7457 without restraints) Performing minimization step: 4532. Total energy = 5914.5390 kcal/mol (5907.0755 without restraints) Performing minimization step: 4533. Total energy = 5913.8684 kcal/mol (5906.4062 without restraints) Performing minimization step: 4534. Total energy = 5913.1978 kcal/mol (5905.7368 without restraints) Performing minimization step: 4535. Total energy = 5912.5276 kcal/mol (5905.0680 without restraints) Performing minimization step: 4536. Total energy = 5911.8579 kcal/mol (5904.3997 without restraints) Performing minimization step: 4537. Total energy = 5911.1888 kcal/mol (5903.7319 without restraints) Performing minimization step: 4538. Total energy = 5910.5206 kcal/mol (5903.0649 without restraints) Performing minimization step: 4539. Total energy = 5909.8524 kcal/mol (5902.3979 without restraints) Performing minimization step: 4540. Total energy = 5909.1840 kcal/mol (5901.7309 without restraints) Performing minimization step: 4541. Total energy = 5908.5162 kcal/mol (5901.0644 without restraints) Performing minimization step: 4542. Total energy = 5907.8498 kcal/mol (5900.3993 without restraints) Performing minimization step: 4543. Total energy = 5907.1833 kcal/mol (5899.7340 without restraints) Performing minimization step: 4544. Total energy = 5906.5170 kcal/mol (5899.0692 without restraints) Performing minimization step: 4545. Total energy = 5905.8515 kcal/mol (5898.4049 without restraints) Performing minimization step: 4546. Total energy = 5905.1862 kcal/mol (5897.7408 without restraints) Performing minimization step: 4547. Total energy = 5904.5210 kcal/mol (5897.0769 without restraints) Performing minimization step: 4548. Total energy = 5903.8564 kcal/mol (5896.4138 without restraints) Performing minimization step: 4549. Total energy = 5903.1924 kcal/mol (5895.7510 without restraints) Performing minimization step: 4550. Total energy = 5902.5289 kcal/mol (5895.0888 without restraints) Performing minimization step: 4551. Total energy = 5901.8658 kcal/mol (5894.4270 without restraints) Performing minimization step: 4552. Total energy = 5901.2029 kcal/mol (5893.7654 without restraints) Performing minimization step: 4553. Total energy = 5900.5403 kcal/mol (5893.1042 without restraints) Performing minimization step: 4554. Total energy = 5899.8784 kcal/mol (5892.4436 without restraints) Performing minimization step: 4555. Total energy = 5899.2169 kcal/mol (5891.7834 without restraints) Performing minimization step: 4556. Total energy = 5898.5563 kcal/mol (5891.1240 without restraints) Performing minimization step: 4557. Total energy = 5897.8960 kcal/mol (5890.4650 without restraints) Performing minimization step: 4558. Total energy = 5897.2357 kcal/mol (5889.8060 without restraints) Performing minimization step: 4559. Total energy = 5896.5762 kcal/mol (5889.1479 without restraints) Performing minimization step: 4560. Total energy = 5895.9168 kcal/mol (5888.4897 without restraints) Performing minimization step: 4561. Total energy = 5895.2577 kcal/mol (5887.8320 without restraints) Performing minimization step: 4562. Total energy = 5894.5990 kcal/mol (5887.1746 without restraints) Performing minimization step: 4563. Total energy = 5893.9406 kcal/mol (5886.5175 without restraints) Performing minimization step: 4564. Total energy = 5893.2833 kcal/mol (5885.8615 without restraints) Performing minimization step: 4565. Total energy = 5892.6264 kcal/mol (5885.2059 without restraints) Performing minimization step: 4566. Total energy = 5891.9697 kcal/mol (5884.5505 without restraints) Performing minimization step: 4567. Total energy = 5891.3132 kcal/mol (5883.8953 without restraints) Performing minimization step: 4568. Total energy = 5890.6576 kcal/mol (5883.2410 without restraints) Performing minimization step: 4569. Total energy = 5890.0031 kcal/mol (5882.5878 without restraints) Performing minimization step: 4570. Total energy = 5889.3484 kcal/mol (5881.9345 without restraints) Performing minimization step: 4571. Total energy = 5888.6939 kcal/mol (5881.2814 without restraints) Performing minimization step: 4572. Total energy = 5888.0397 kcal/mol (5880.6283 without restraints) Performing minimization step: 4573. Total energy = 5887.3858 kcal/mol (5879.9757 without restraints) Performing minimization step: 4574. Total energy = 5886.7323 kcal/mol (5879.3236 without restraints) Performing minimization step: 4575. Total energy = 5886.0792 kcal/mol (5878.6718 without restraints) Performing minimization step: 4576. Total energy = 5885.4273 kcal/mol (5878.0212 without restraints) Performing minimization step: 4577. Total energy = 5884.7757 kcal/mol (5877.3709 without restraints) Performing minimization step: 4578. Total energy = 5884.1241 kcal/mol (5876.7206 without restraints) Performing minimization step: 4579. Total energy = 5883.4726 kcal/mol (5876.0704 without restraints) Performing minimization step: 4580. Total energy = 5882.8218 kcal/mol (5875.4212 without restraints) Performing minimization step: 4581. Total energy = 5882.1712 kcal/mol (5874.7716 without restraints) Performing minimization step: 4582. Total energy = 5881.5212 kcal/mol (5874.1230 without restraints) Performing minimization step: 4583. Total energy = 5880.8721 kcal/mol (5873.4753 without restraints) Performing minimization step: 4584. Total energy = 5880.2226 kcal/mol (5872.8270 without restraints) Performing minimization step: 4585. Total energy = 5879.5735 kcal/mol (5872.1792 without restraints) Performing minimization step: 4586. Total energy = 5878.9256 kcal/mol (5871.5326 without restraints) Performing minimization step: 4587. Total energy = 5878.2777 kcal/mol (5870.8861 without restraints) Performing minimization step: 4588. Total energy = 5877.6300 kcal/mol (5870.2396 without restraints) Performing minimization step: 4589. Total energy = 5876.9832 kcal/mol (5869.5942 without restraints) Performing minimization step: 4590. Total energy = 5876.3363 kcal/mol (5868.9485 without restraints) Performing minimization step: 4591. Total energy = 5875.6898 kcal/mol (5868.3034 without restraints) Performing minimization step: 4592. Total energy = 5875.0442 kcal/mol (5867.6592 without restraints) Performing minimization step: 4593. Total energy = 5874.3989 kcal/mol (5867.0151 without restraints) Performing minimization step: 4594. Total energy = 5873.7536 kcal/mol (5866.3712 without restraints) Performing minimization step: 4595. Total energy = 5873.1087 kcal/mol (5865.7275 without restraints) Performing minimization step: 4596. Total energy = 5872.4643 kcal/mol (5865.0845 without restraints) Performing minimization step: 4597. Total energy = 5871.8206 kcal/mol (5864.4421 without restraints) Performing minimization step: 4598. Total energy = 5871.1774 kcal/mol (5863.8003 without restraints) Performing minimization step: 4599. Total energy = 5870.5341 kcal/mol (5863.1581 without restraints) Performing minimization step: 4600. Total energy = 5869.8912 kcal/mol (5862.5166 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 5869.2490 kcal/mol (5861.8758 without restraints) Performing minimization step: 4602. Total energy = 5868.6073 kcal/mol (5861.2353 without restraints) Performing minimization step: 4603. Total energy = 5867.9658 kcal/mol (5860.5952 without restraints) Performing minimization step: 4604. Total energy = 5867.3249 kcal/mol (5859.9557 without restraints) Performing minimization step: 4605. Total energy = 5866.6842 kcal/mol (5859.3163 without restraints) Performing minimization step: 4606. Total energy = 5866.0439 kcal/mol (5858.6773 without restraints) Performing minimization step: 4607. Total energy = 5865.4040 kcal/mol (5858.0387 without restraints) Performing minimization step: 4608. Total energy = 5864.7646 kcal/mol (5857.4006 without restraints) Performing minimization step: 4609. Total energy = 5864.1255 kcal/mol (5856.7629 without restraints) Performing minimization step: 4610. Total energy = 5863.4873 kcal/mol (5856.1260 without restraints) Performing minimization step: 4611. Total energy = 5862.8493 kcal/mol (5855.4892 without restraints) Performing minimization step: 4612. Total energy = 5862.2118 kcal/mol (5854.8531 without restraints) Performing minimization step: 4613. Total energy = 5861.5743 kcal/mol (5854.2170 without restraints) Performing minimization step: 4614. Total energy = 5860.9375 kcal/mol (5853.5814 without restraints) Performing minimization step: 4615. Total energy = 5860.3005 kcal/mol (5852.9457 without restraints) Performing minimization step: 4616. Total energy = 5859.6640 kcal/mol (5852.3106 without restraints) Performing minimization step: 4617. Total energy = 5859.0286 kcal/mol (5851.6766 without restraints) Performing minimization step: 4618. Total energy = 5858.3933 kcal/mol (5851.0426 without restraints) Performing minimization step: 4619. Total energy = 5857.7586 kcal/mol (5850.4091 without restraints) Performing minimization step: 4620. Total energy = 5857.1242 kcal/mol (5849.7761 without restraints) Performing minimization step: 4621. Total energy = 5856.4903 kcal/mol (5849.1435 without restraints) Performing minimization step: 4622. Total energy = 5855.8564 kcal/mol (5848.5110 without restraints) Performing minimization step: 4623. Total energy = 5855.2227 kcal/mol (5847.8785 without restraints) Performing minimization step: 4624. Total energy = 5854.5899 kcal/mol (5847.2471 without restraints) Performing minimization step: 4625. Total energy = 5853.9578 kcal/mol (5846.6163 without restraints) Performing minimization step: 4626. Total energy = 5853.3262 kcal/mol (5845.9860 without restraints) Performing minimization step: 4627. Total energy = 5852.6946 kcal/mol (5845.3558 without restraints) Performing minimization step: 4628. Total energy = 5852.0635 kcal/mol (5844.7261 without restraints) Performing minimization step: 4629. Total energy = 5851.4332 kcal/mol (5844.0970 without restraints) Performing minimization step: 4630. Total energy = 5850.8030 kcal/mol (5843.4682 without restraints) Performing minimization step: 4631. Total energy = 5850.1731 kcal/mol (5842.8396 without restraints) Performing minimization step: 4632. Total energy = 5849.5434 kcal/mol (5842.2112 without restraints) Performing minimization step: 4633. Total energy = 5848.9141 kcal/mol (5841.5833 without restraints) Performing minimization step: 4634. Total energy = 5848.2853 kcal/mol (5840.9557 without restraints) Performing minimization step: 4635. Total energy = 5847.6573 kcal/mol (5840.3291 without restraints) Performing minimization step: 4636. Total energy = 5847.0294 kcal/mol (5839.7026 without restraints) Performing minimization step: 4637. Total energy = 5846.4017 kcal/mol (5839.0763 without restraints) Performing minimization step: 4638. Total energy = 5845.7748 kcal/mol (5838.4506 without restraints) Performing minimization step: 4639. Total energy = 5845.1487 kcal/mol (5837.8259 without restraints) Performing minimization step: 4640. Total energy = 5844.5226 kcal/mol (5837.2015 without restraints) Performing minimization step: 4641. Total energy = 5843.8967 kcal/mol (5836.5764 without restraints) Performing minimization step: 4642. Total energy = 5843.2711 kcal/mol (5835.9523 without restraints) Performing minimization step: 4643. Total energy = 5842.6459 kcal/mol (5835.3284 without restraints) Performing minimization step: 4644. Total energy = 5842.0211 kcal/mol (5834.7049 without restraints) Performing minimization step: 4645. Total energy = 5841.3967 kcal/mol (5834.0818 without restraints) Performing minimization step: 4646. Total energy = 5840.7730 kcal/mol (5833.4594 without restraints) Performing minimization step: 4647. Total energy = 5840.1494 kcal/mol (5832.8373 without restraints) Performing minimization step: 4648. Total energy = 5839.5261 kcal/mol (5832.2152 without restraints) Performing minimization step: 4649. Total energy = 5838.9041 kcal/mol (5831.5946 without restraints) Performing minimization step: 4650. Total energy = 5838.2817 kcal/mol (5830.9736 without restraints) Performing minimization step: 4651. Total energy = 5837.6599 kcal/mol (5830.3531 without restraints) Performing minimization step: 4652. Total energy = 5837.0385 kcal/mol (5829.7330 without restraints) Performing minimization step: 4653. Total energy = 5836.4178 kcal/mol (5829.1136 without restraints) Performing minimization step: 4654. Total energy = 5835.7975 kcal/mol (5828.4947 without restraints) Performing minimization step: 4655. Total energy = 5835.1774 kcal/mol (5827.8760 without restraints) Performing minimization step: 4656. Total energy = 5834.5575 kcal/mol (5827.2574 without restraints) Performing minimization step: 4657. Total energy = 5833.9387 kcal/mol (5826.6399 without restraints) Performing minimization step: 4658. Total energy = 5833.3198 kcal/mol (5826.0223 without restraints) Performing minimization step: 4659. Total energy = 5832.7010 kcal/mol (5825.4049 without restraints) Performing minimization step: 4660. Total energy = 5832.0827 kcal/mol (5824.7879 without restraints) Performing minimization step: 4661. Total energy = 5831.4648 kcal/mol (5824.1713 without restraints) Performing minimization step: 4662. Total energy = 5830.8473 kcal/mol (5823.5552 without restraints) Performing minimization step: 4663. Total energy = 5830.2307 kcal/mol (5822.9399 without restraints) Performing minimization step: 4664. Total energy = 5829.6143 kcal/mol (5822.3248 without restraints) Performing minimization step: 4665. Total energy = 5828.9986 kcal/mol (5821.7106 without restraints) Performing minimization step: 4666. Total energy = 5828.3834 kcal/mol (5821.0967 without restraints) Performing minimization step: 4667. Total energy = 5827.7679 kcal/mol (5820.4825 without restraints) Performing minimization step: 4668. Total energy = 5827.1528 kcal/mol (5819.8688 without restraints) Performing minimization step: 4669. Total energy = 5826.5383 kcal/mol (5819.2556 without restraints) Performing minimization step: 4670. Total energy = 5825.9243 kcal/mol (5818.6429 without restraints) Performing minimization step: 4671. Total energy = 5825.3101 kcal/mol (5818.0300 without restraints) Performing minimization step: 4672. Total energy = 5824.6966 kcal/mol (5817.4179 without restraints) Performing minimization step: 4673. Total energy = 5824.0836 kcal/mol (5816.8063 without restraints) Performing minimization step: 4674. Total energy = 5823.4714 kcal/mol (5816.1954 without restraints) Performing minimization step: 4675. Total energy = 5822.8596 kcal/mol (5815.5850 without restraints) Performing minimization step: 4676. Total energy = 5822.2485 kcal/mol (5814.9753 without restraints) Performing minimization step: 4677. Total energy = 5821.6371 kcal/mol (5814.3652 without restraints) Performing minimization step: 4678. Total energy = 5821.0265 kcal/mol (5813.7559 without restraints) Performing minimization step: 4679. Total energy = 5820.4164 kcal/mol (5813.1472 without restraints) Performing minimization step: 4680. Total energy = 5819.8067 kcal/mol (5812.5388 without restraints) Performing minimization step: 4681. Total energy = 5819.1972 kcal/mol (5811.9305 without restraints) Performing minimization step: 4682. Total energy = 5818.5882 kcal/mol (5811.3231 without restraints) Performing minimization step: 4683. Total energy = 5817.9794 kcal/mol (5810.7156 without restraints) Performing minimization step: 4684. Total energy = 5817.3711 kcal/mol (5810.1086 without restraints) Performing minimization step: 4685. Total energy = 5816.7638 kcal/mol (5809.5028 without restraints) Performing minimization step: 4686. Total energy = 5816.1564 kcal/mol (5808.8966 without restraints) Performing minimization step: 4687. Total energy = 5815.5490 kcal/mol (5808.2907 without restraints) Performing minimization step: 4688. Total energy = 5814.9422 kcal/mol (5807.6851 without restraints) Performing minimization step: 4689. Total energy = 5814.3355 kcal/mol (5807.0799 without restraints) Performing minimization step: 4690. Total energy = 5813.7303 kcal/mol (5806.4760 without restraints) Performing minimization step: 4691. Total energy = 5813.1250 kcal/mol (5805.8720 without restraints) Performing minimization step: 4692. Total energy = 5812.5198 kcal/mol (5805.2681 without restraints) Performing minimization step: 4693. Total energy = 5811.9152 kcal/mol (5804.6650 without restraints) Performing minimization step: 4694. Total energy = 5811.3112 kcal/mol (5804.0622 without restraints) Performing minimization step: 4695. Total energy = 5810.7074 kcal/mol (5803.4599 without restraints) Performing minimization step: 4696. Total energy = 5810.1041 kcal/mol (5802.8580 without restraints) Performing minimization step: 4697. Total energy = 5809.5012 kcal/mol (5802.2563 without restraints) Performing minimization step: 4698. Total energy = 5808.8983 kcal/mol (5801.6548 without restraints) Performing minimization step: 4699. Total energy = 5808.2962 kcal/mol (5801.0540 without restraints) Performing minimization step: 4700. Total energy = 5807.6947 kcal/mol (5800.4538 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 5807.0935 kcal/mol (5799.8540 without restraints) Performing minimization step: 4702. Total energy = 5806.4929 kcal/mol (5799.2548 without restraints) Performing minimization step: 4703. Total energy = 5805.8925 kcal/mol (5798.6558 without restraints) Performing minimization step: 4704. Total energy = 5805.2921 kcal/mol (5798.0567 without restraints) Performing minimization step: 4705. Total energy = 5804.6923 kcal/mol (5797.4583 without restraints) Performing minimization step: 4706. Total energy = 5804.0937 kcal/mol (5796.8611 without restraints) Performing minimization step: 4707. Total energy = 5803.4944 kcal/mol (5796.2632 without restraints) Performing minimization step: 4708. Total energy = 5802.8962 kcal/mol (5795.6662 without restraints) Performing minimization step: 4709. Total energy = 5802.2980 kcal/mol (5795.0695 without restraints) Performing minimization step: 4710. Total energy = 5801.7001 kcal/mol (5794.4729 without restraints) Performing minimization step: 4711. Total energy = 5801.1029 kcal/mol (5793.8771 without restraints) Performing minimization step: 4712. Total energy = 5800.5060 kcal/mol (5793.2815 without restraints) Performing minimization step: 4713. Total energy = 5799.9092 kcal/mol (5792.6859 without restraints) Performing minimization step: 4714. Total energy = 5799.3127 kcal/mol (5792.0910 without restraints) Performing minimization step: 4715. Total energy = 5798.7175 kcal/mol (5791.4971 without restraints) Performing minimization step: 4716. Total energy = 5798.1222 kcal/mol (5790.9031 without restraints) Performing minimization step: 4717. Total energy = 5797.5271 kcal/mol (5790.3094 without restraints) Performing minimization step: 4718. Total energy = 5796.9331 kcal/mol (5789.7168 without restraints) Performing minimization step: 4719. Total energy = 5796.3389 kcal/mol (5789.1240 without restraints) Performing minimization step: 4720. Total energy = 5795.7454 kcal/mol (5788.5318 without restraints) Performing minimization step: 4721. Total energy = 5795.1521 kcal/mol (5787.9400 without restraints) Performing minimization step: 4722. Total energy = 5794.5592 kcal/mol (5787.3484 without restraints) Performing minimization step: 4723. Total energy = 5793.9668 kcal/mol (5786.7573 without restraints) Performing minimization step: 4724. Total energy = 5793.3750 kcal/mol (5786.1669 without restraints) Performing minimization step: 4725. Total energy = 5792.7833 kcal/mol (5785.5766 without restraints) Performing minimization step: 4726. Total energy = 5792.1920 kcal/mol (5784.9868 without restraints) Performing minimization step: 4727. Total energy = 5791.6009 kcal/mol (5784.3969 without restraints) Performing minimization step: 4728. Total energy = 5791.0105 kcal/mol (5783.8079 without restraints) Performing minimization step: 4729. Total energy = 5790.4204 kcal/mol (5783.2192 without restraints) Performing minimization step: 4730. Total energy = 5789.8306 kcal/mol (5782.6308 without restraints) Performing minimization step: 4731. Total energy = 5789.2418 kcal/mol (5782.0433 without restraints) Performing minimization step: 4732. Total energy = 5788.6533 kcal/mol (5781.4561 without restraints) Performing minimization step: 4733. Total energy = 5788.0647 kcal/mol (5780.8690 without restraints) Performing minimization step: 4734. Total energy = 5787.4766 kcal/mol (5780.2822 without restraints) Performing minimization step: 4735. Total energy = 5786.8891 kcal/mol (5779.6961 without restraints) Performing minimization step: 4736. Total energy = 5786.3018 kcal/mol (5779.1100 without restraints) Performing minimization step: 4737. Total energy = 5785.7151 kcal/mol (5778.5248 without restraints) Performing minimization step: 4738. Total energy = 5785.1285 kcal/mol (5777.9396 without restraints) Performing minimization step: 4739. Total energy = 5784.5424 kcal/mol (5777.3548 without restraints) Performing minimization step: 4740. Total energy = 5783.9568 kcal/mol (5776.7708 without restraints) Performing minimization step: 4741. Total energy = 5783.3717 kcal/mol (5776.1869 without restraints) Performing minimization step: 4742. Total energy = 5782.7869 kcal/mol (5775.6036 without restraints) Performing minimization step: 4743. Total energy = 5782.2031 kcal/mol (5775.0211 without restraints) Performing minimization step: 4744. Total energy = 5781.6191 kcal/mol (5774.4385 without restraints) Performing minimization step: 4745. Total energy = 5781.0355 kcal/mol (5773.8563 without restraints) Performing minimization step: 4746. Total energy = 5780.4523 kcal/mol (5773.2745 without restraints) Performing minimization step: 4747. Total energy = 5779.8698 kcal/mol (5772.6934 without restraints) Performing minimization step: 4748. Total energy = 5779.2880 kcal/mol (5772.1130 without restraints) Performing minimization step: 4749. Total energy = 5778.7061 kcal/mol (5771.5324 without restraints) Performing minimization step: 4750. Total energy = 5778.1248 kcal/mol (5770.9524 without restraints) Performing minimization step: 4751. Total energy = 5777.5438 kcal/mol (5770.3729 without restraints) Performing minimization step: 4752. Total energy = 5776.9632 kcal/mol (5769.7936 without restraints) Performing minimization step: 4753. Total energy = 5776.3829 kcal/mol (5769.2147 without restraints) Performing minimization step: 4754. Total energy = 5775.8028 kcal/mol (5768.6360 without restraints) Performing minimization step: 4755. Total energy = 5775.2237 kcal/mol (5768.0584 without restraints) Performing minimization step: 4756. Total energy = 5774.6450 kcal/mol (5767.4810 without restraints) Performing minimization step: 4757. Total energy = 5774.0663 kcal/mol (5766.9038 without restraints) Performing minimization step: 4758. Total energy = 5773.4885 kcal/mol (5766.3273 without restraints) Performing minimization step: 4759. Total energy = 5772.9107 kcal/mol (5765.7508 without restraints) Performing minimization step: 4760. Total energy = 5772.3336 kcal/mol (5765.1751 without restraints) Performing minimization step: 4761. Total energy = 5771.7567 kcal/mol (5764.5996 without restraints) Performing minimization step: 4762. Total energy = 5771.1801 kcal/mol (5764.0245 without restraints) Performing minimization step: 4763. Total energy = 5770.6040 kcal/mol (5763.4497 without restraints) Performing minimization step: 4764. Total energy = 5770.0285 kcal/mol (5762.8757 without restraints) Performing minimization step: 4765. Total energy = 5769.4533 kcal/mol (5762.3018 without restraints) Performing minimization step: 4766. Total energy = 5768.8786 kcal/mol (5761.7285 without restraints) Performing minimization step: 4767. Total energy = 5768.3039 kcal/mol (5761.1552 without restraints) Performing minimization step: 4768. Total energy = 5767.7303 kcal/mol (5760.5831 without restraints) Performing minimization step: 4769. Total energy = 5767.1567 kcal/mol (5760.0108 without restraints) Performing minimization step: 4770. Total energy = 5766.5835 kcal/mol (5759.4389 without restraints) Performing minimization step: 4771. Total energy = 5766.0106 kcal/mol (5758.8674 without restraints) Performing minimization step: 4772. Total energy = 5765.4382 kcal/mol (5758.2964 without restraints) Performing minimization step: 4773. Total energy = 5764.8662 kcal/mol (5757.7260 without restraints) Performing minimization step: 4774. Total energy = 5764.2951 kcal/mol (5757.1561 without restraints) Performing minimization step: 4775. Total energy = 5763.7241 kcal/mol (5756.5866 without restraints) Performing minimization step: 4776. Total energy = 5763.1535 kcal/mol (5756.0174 without restraints) Performing minimization step: 4777. Total energy = 5762.5834 kcal/mol (5755.4487 without restraints) Performing minimization step: 4778. Total energy = 5762.0136 kcal/mol (5754.8804 without restraints) Performing minimization step: 4779. Total energy = 5761.4443 kcal/mol (5754.3124 without restraints) Performing minimization step: 4780. Total energy = 5760.8751 kcal/mol (5753.7443 without restraints) Performing minimization step: 4781. Total energy = 5760.3064 kcal/mol (5753.1772 without restraints) Performing minimization step: 4782. Total energy = 5759.7381 kcal/mol (5752.6103 without restraints) Performing minimization step: 4783. Total energy = 5759.1706 kcal/mol (5752.0443 without restraints) Performing minimization step: 4784. Total energy = 5758.6032 kcal/mol (5751.4782 without restraints) Performing minimization step: 4785. Total energy = 5758.0362 kcal/mol (5750.9127 without restraints) Performing minimization step: 4786. Total energy = 5757.4699 kcal/mol (5750.3479 without restraints) Performing minimization step: 4787. Total energy = 5756.9042 kcal/mol (5749.7835 without restraints) Performing minimization step: 4788. Total energy = 5756.3385 kcal/mol (5749.2191 without restraints) Performing minimization step: 4789. Total energy = 5755.7733 kcal/mol (5748.6554 without restraints) Performing minimization step: 4790. Total energy = 5755.2087 kcal/mol (5748.0922 without restraints) Performing minimization step: 4791. Total energy = 5754.6443 kcal/mol (5747.5292 without restraints) Performing minimization step: 4792. Total energy = 5754.0803 kcal/mol (5746.9665 without restraints) Performing minimization step: 4793. Total energy = 5753.5164 kcal/mol (5746.4041 without restraints) Performing minimization step: 4794. Total energy = 5752.9533 kcal/mol (5745.8423 without restraints) Performing minimization step: 4795. Total energy = 5752.3906 kcal/mol (5745.2811 without restraints) Performing minimization step: 4796. Total energy = 5751.8285 kcal/mol (5744.7203 without restraints) Performing minimization step: 4797. Total energy = 5751.2666 kcal/mol (5744.1598 without restraints) Performing minimization step: 4798. Total energy = 5750.7049 kcal/mol (5743.5998 without restraints) Performing minimization step: 4799. Total energy = 5750.1435 kcal/mol (5743.0396 without restraints) Performing minimization step: 4800. Total energy = 5749.5829 kcal/mol (5742.4804 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 5749.0224 kcal/mol (5741.9214 without restraints) Performing minimization step: 4802. Total energy = 5748.4624 kcal/mol (5741.3628 without restraints) Performing minimization step: 4803. Total energy = 5747.9030 kcal/mol (5740.8048 without restraints) Performing minimization step: 4804. Total energy = 5747.3444 kcal/mol (5740.2476 without restraints) Performing minimization step: 4805. Total energy = 5746.7855 kcal/mol (5739.6901 without restraints) Performing minimization step: 4806. Total energy = 5746.2272 kcal/mol (5739.1331 without restraints) Performing minimization step: 4807. Total energy = 5745.6692 kcal/mol (5738.5766 without restraints) Performing minimization step: 4808. Total energy = 5745.1119 kcal/mol (5738.0208 without restraints) Performing minimization step: 4809. Total energy = 5744.5548 kcal/mol (5737.4651 without restraints) Performing minimization step: 4810. Total energy = 5743.9980 kcal/mol (5736.9096 without restraints) Performing minimization step: 4811. Total energy = 5743.4416 kcal/mol (5736.3546 without restraints) Performing minimization step: 4812. Total energy = 5742.8856 kcal/mol (5735.8000 without restraints) Performing minimization step: 4813. Total energy = 5742.3305 kcal/mol (5735.2463 without restraints) Performing minimization step: 4814. Total energy = 5741.7754 kcal/mol (5734.6927 without restraints) Performing minimization step: 4815. Total energy = 5741.2211 kcal/mol (5734.1399 without restraints) Performing minimization step: 4816. Total energy = 5740.6670 kcal/mol (5733.5872 without restraints) Performing minimization step: 4817. Total energy = 5740.1131 kcal/mol (5733.0347 without restraints) Performing minimization step: 4818. Total energy = 5739.5597 kcal/mol (5732.4828 without restraints) Performing minimization step: 4819. Total energy = 5739.0072 kcal/mol (5731.9315 without restraints) Performing minimization step: 4820. Total energy = 5738.4546 kcal/mol (5731.3805 without restraints) Performing minimization step: 4821. Total energy = 5737.9026 kcal/mol (5730.8298 without restraints) Performing minimization step: 4822. Total energy = 5737.3509 kcal/mol (5730.2796 without restraints) Performing minimization step: 4823. Total energy = 5736.7993 kcal/mol (5729.7295 without restraints) Performing minimization step: 4824. Total energy = 5736.2483 kcal/mol (5729.1798 without restraints) Performing minimization step: 4825. Total energy = 5735.6980 kcal/mol (5728.6311 without restraints) Performing minimization step: 4826. Total energy = 5735.1484 kcal/mol (5728.0827 without restraints) Performing minimization step: 4827. Total energy = 5734.5985 kcal/mol (5727.5343 without restraints) Performing minimization step: 4828. Total energy = 5734.0491 kcal/mol (5726.9863 without restraints) Performing minimization step: 4829. Total energy = 5733.5003 kcal/mol (5726.4389 without restraints) Performing minimization step: 4830. Total energy = 5732.9521 kcal/mol (5725.8922 without restraints) Performing minimization step: 4831. Total energy = 5732.4043 kcal/mol (5725.3459 without restraints) Performing minimization step: 4832. Total energy = 5731.8568 kcal/mol (5724.7998 without restraints) Performing minimization step: 4833. Total energy = 5731.3094 kcal/mol (5724.2538 without restraints) Performing minimization step: 4834. Total energy = 5730.7625 kcal/mol (5723.7082 without restraints) Performing minimization step: 4835. Total energy = 5730.2163 kcal/mol (5723.1636 without restraints) Performing minimization step: 4836. Total energy = 5729.6713 kcal/mol (5722.6202 without restraints) Performing minimization step: 4837. Total energy = 5729.1258 kcal/mol (5722.0759 without restraints) Performing minimization step: 4838. Total energy = 5728.5804 kcal/mol (5721.5319 without restraints) Performing minimization step: 4839. Total energy = 5728.0355 kcal/mol (5720.9884 without restraints) Performing minimization step: 4840. Total energy = 5727.4910 kcal/mol (5720.4453 without restraints) Performing minimization step: 4841. Total energy = 5726.9469 kcal/mol (5719.9027 without restraints) Performing minimization step: 4842. Total energy = 5726.4033 kcal/mol (5719.3605 without restraints) Performing minimization step: 4843. Total energy = 5725.8602 kcal/mol (5718.8189 without restraints) Performing minimization step: 4844. Total energy = 5725.3174 kcal/mol (5718.2774 without restraints) Performing minimization step: 4845. Total energy = 5724.7751 kcal/mol (5717.7367 without restraints) Performing minimization step: 4846. Total energy = 5724.2328 kcal/mol (5717.1958 without restraints) Performing minimization step: 4847. Total energy = 5723.6911 kcal/mol (5716.6555 without restraints) Performing minimization step: 4848. Total energy = 5723.1498 kcal/mol (5716.1157 without restraints) Performing minimization step: 4849. Total energy = 5722.6087 kcal/mol (5715.5760 without restraints) Performing minimization step: 4850. Total energy = 5722.0688 kcal/mol (5715.0376 without restraints) Performing minimization step: 4851. Total energy = 5721.5286 kcal/mol (5714.4987 without restraints) Performing minimization step: 4852. Total energy = 5720.9889 kcal/mol (5713.9605 without restraints) Performing minimization step: 4853. Total energy = 5720.4497 kcal/mol (5713.4227 without restraints) Performing minimization step: 4854. Total energy = 5719.9110 kcal/mol (5712.8855 without restraints) Performing minimization step: 4855. Total energy = 5719.3726 kcal/mol (5712.3485 without restraints) Performing minimization step: 4856. Total energy = 5718.8345 kcal/mol (5711.8119 without restraints) Performing minimization step: 4857. Total energy = 5718.2970 kcal/mol (5711.2758 without restraints) Performing minimization step: 4858. Total energy = 5717.7599 kcal/mol (5710.7401 without restraints) Performing minimization step: 4859. Total energy = 5717.2232 kcal/mol (5710.2049 without restraints) Performing minimization step: 4860. Total energy = 5716.6871 kcal/mol (5709.6703 without restraints) Performing minimization step: 4861. Total energy = 5716.1508 kcal/mol (5709.1354 without restraints) Performing minimization step: 4862. Total energy = 5715.6153 kcal/mol (5708.6014 without restraints) Performing minimization step: 4863. Total energy = 5715.0801 kcal/mol (5708.0676 without restraints) Performing minimization step: 4864. Total energy = 5714.5454 kcal/mol (5707.5343 without restraints) Performing minimization step: 4865. Total energy = 5714.0108 kcal/mol (5707.0012 without restraints) Performing minimization step: 4866. Total energy = 5713.4768 kcal/mol (5706.4686 without restraints) Performing minimization step: 4867. Total energy = 5712.9432 kcal/mol (5705.9365 without restraints) Performing minimization step: 4868. Total energy = 5712.4102 kcal/mol (5705.4050 without restraints) Performing minimization step: 4869. Total energy = 5711.8779 kcal/mol (5704.8741 without restraints) Performing minimization step: 4870. Total energy = 5711.3461 kcal/mol (5704.3437 without restraints) Performing minimization step: 4871. Total energy = 5710.8142 kcal/mol (5703.8134 without restraints) Performing minimization step: 4872. Total energy = 5710.2828 kcal/mol (5703.2834 without restraints) Performing minimization step: 4873. Total energy = 5709.7517 kcal/mol (5702.7537 without restraints) Performing minimization step: 4874. Total energy = 5709.2208 kcal/mol (5702.2242 without restraints) Performing minimization step: 4875. Total energy = 5708.6908 kcal/mol (5701.6959 without restraints) Performing minimization step: 4876. Total energy = 5708.1607 kcal/mol (5701.1671 without restraints) Performing minimization step: 4877. Total energy = 5707.6310 kcal/mol (5700.6389 without restraints) Performing minimization step: 4878. Total energy = 5707.1021 kcal/mol (5700.1114 without restraints) Performing minimization step: 4879. Total energy = 5706.5735 kcal/mol (5699.5842 without restraints) Performing minimization step: 4880. Total energy = 5706.0456 kcal/mol (5699.0578 without restraints) Performing minimization step: 4881. Total energy = 5705.5182 kcal/mol (5698.5318 without restraints) Performing minimization step: 4882. Total energy = 5704.9905 kcal/mol (5698.0056 without restraints) Performing minimization step: 4883. Total energy = 5704.4643 kcal/mol (5697.4809 without restraints) Performing minimization step: 4884. Total energy = 5703.9372 kcal/mol (5696.9552 without restraints) Performing minimization step: 4885. Total energy = 5703.4109 kcal/mol (5696.4304 without restraints) Performing minimization step: 4886. Total energy = 5702.8850 kcal/mol (5695.9060 without restraints) Performing minimization step: 4887. Total energy = 5702.3594 kcal/mol (5695.3817 without restraints) Performing minimization step: 4888. Total energy = 5701.8345 kcal/mol (5694.8584 without restraints) Performing minimization step: 4889. Total energy = 5701.3100 kcal/mol (5694.3353 without restraints) Performing minimization step: 4890. Total energy = 5700.7852 kcal/mol (5693.8120 without restraints) Performing minimization step: 4891. Total energy = 5700.2613 kcal/mol (5693.2897 without restraints) Performing minimization step: 4892. Total energy = 5699.7379 kcal/mol (5692.7676 without restraints) Performing minimization step: 4893. Total energy = 5699.2145 kcal/mol (5692.2456 without restraints) Performing minimization step: 4894. Total energy = 5698.6919 kcal/mol (5691.7246 without restraints) Performing minimization step: 4895. Total energy = 5698.1691 kcal/mol (5691.2032 without restraints) Performing minimization step: 4896. Total energy = 5697.6476 kcal/mol (5690.6834 without restraints) Performing minimization step: 4897. Total energy = 5697.1261 kcal/mol (5690.1631 without restraints) Performing minimization step: 4898. Total energy = 5696.6046 kcal/mol (5689.6431 without restraints) Performing minimization step: 4899. Total energy = 5696.0837 kcal/mol (5689.1237 without restraints) Performing minimization step: 4900. Total energy = 5695.5633 kcal/mol (5688.6050 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 5695.0433 kcal/mol (5688.0862 without restraints) Performing minimization step: 4902. Total energy = 5694.5238 kcal/mol (5687.5682 without restraints) Performing minimization step: 4903. Total energy = 5694.0041 kcal/mol (5687.0500 without restraints) Performing minimization step: 4904. Total energy = 5693.4853 kcal/mol (5686.5326 without restraints) Performing minimization step: 4905. Total energy = 5692.9670 kcal/mol (5686.0158 without restraints) Performing minimization step: 4906. Total energy = 5692.4486 kcal/mol (5685.4989 without restraints) Performing minimization step: 4907. Total energy = 5691.9301 kcal/mol (5684.9818 without restraints) Performing minimization step: 4908. Total energy = 5691.4128 kcal/mol (5684.4661 without restraints) Performing minimization step: 4909. Total energy = 5690.8956 kcal/mol (5683.9503 without restraints) Performing minimization step: 4910. Total energy = 5690.3791 kcal/mol (5683.4353 without restraints) Performing minimization step: 4911. Total energy = 5689.8628 kcal/mol (5682.9204 without restraints) Performing minimization step: 4912. Total energy = 5689.3473 kcal/mol (5682.4064 without restraints) Performing minimization step: 4913. Total energy = 5688.8324 kcal/mol (5681.8930 without restraints) Performing minimization step: 4914. Total energy = 5688.3170 kcal/mol (5681.3791 without restraints) Performing minimization step: 4915. Total energy = 5687.8023 kcal/mol (5680.8657 without restraints) Performing minimization step: 4916. Total energy = 5687.2884 kcal/mol (5680.3536 without restraints) Performing minimization step: 4917. Total energy = 5686.7747 kcal/mol (5679.8413 without restraints) Performing minimization step: 4918. Total energy = 5686.2614 kcal/mol (5679.3294 without restraints) Performing minimization step: 4919. Total energy = 5685.7484 kcal/mol (5678.8178 without restraints) Performing minimization step: 4920. Total energy = 5685.2359 kcal/mol (5678.3068 without restraints) Performing minimization step: 4921. Total energy = 5684.7235 kcal/mol (5677.7960 without restraints) Performing minimization step: 4922. Total energy = 5684.2116 kcal/mol (5677.2855 without restraints) Performing minimization step: 4923. Total energy = 5683.7001 kcal/mol (5676.7755 without restraints) Performing minimization step: 4924. Total energy = 5683.1890 kcal/mol (5676.2658 without restraints) Performing minimization step: 4925. Total energy = 5682.6778 kcal/mol (5675.7564 without restraints) Performing minimization step: 4926. Total energy = 5682.1674 kcal/mol (5675.2473 without restraints) Performing minimization step: 4927. Total energy = 5681.6570 kcal/mol (5674.7384 without restraints) Performing minimization step: 4928. Total energy = 5681.1473 kcal/mol (5674.2302 without restraints) Performing minimization step: 4929. Total energy = 5680.6380 kcal/mol (5673.7223 without restraints) Performing minimization step: 4930. Total energy = 5680.1289 kcal/mol (5673.2147 without restraints) Performing minimization step: 4931. Total energy = 5679.6207 kcal/mol (5672.7081 without restraints) Performing minimization step: 4932. Total energy = 5679.1127 kcal/mol (5672.2015 without restraints) Performing minimization step: 4933. Total energy = 5678.6053 kcal/mol (5671.6956 without restraints) Performing minimization step: 4934. Total energy = 5678.0980 kcal/mol (5671.1896 without restraints) Performing minimization step: 4935. Total energy = 5677.5907 kcal/mol (5670.6840 without restraints) Performing minimization step: 4936. Total energy = 5677.0840 kcal/mol (5670.1787 without restraints) Performing minimization step: 4937. Total energy = 5676.5777 kcal/mol (5669.6739 without restraints) Performing minimization step: 4938. Total energy = 5676.0716 kcal/mol (5669.1693 without restraints) Performing minimization step: 4939. Total energy = 5675.5662 kcal/mol (5668.6655 without restraints) Performing minimization step: 4940. Total energy = 5675.0612 kcal/mol (5668.1619 without restraints) Performing minimization step: 4941. Total energy = 5674.5564 kcal/mol (5667.6586 without restraints) Performing minimization step: 4942. Total energy = 5674.0521 kcal/mol (5667.1558 without restraints) Performing minimization step: 4943. Total energy = 5673.5479 kcal/mol (5666.6531 without restraints) Performing minimization step: 4944. Total energy = 5673.0441 kcal/mol (5666.1508 without restraints) Performing minimization step: 4945. Total energy = 5672.5408 kcal/mol (5665.6490 without restraints) Performing minimization step: 4946. Total energy = 5672.0383 kcal/mol (5665.1480 without restraints) Performing minimization step: 4947. Total energy = 5671.5357 kcal/mol (5664.6469 without restraints) Performing minimization step: 4948. Total energy = 5671.0335 kcal/mol (5664.1463 without restraints) Performing minimization step: 4949. Total energy = 5670.5316 kcal/mol (5663.6458 without restraints) Performing minimization step: 4950. Total energy = 5670.0300 kcal/mol (5663.1457 without restraints) Performing minimization step: 4951. Total energy = 5669.5294 kcal/mol (5662.6465 without restraints) Performing minimization step: 4952. Total energy = 5669.0286 kcal/mol (5662.1472 without restraints) Performing minimization step: 4953. Total energy = 5668.5284 kcal/mol (5661.6486 without restraints) Performing minimization step: 4954. Total energy = 5668.0287 kcal/mol (5661.1504 without restraints) Performing minimization step: 4955. Total energy = 5667.5296 kcal/mol (5660.6527 without restraints) Performing minimization step: 4956. Total energy = 5667.0307 kcal/mol (5660.1556 without restraints) Performing minimization step: 4957. Total energy = 5666.5321 kcal/mol (5659.6583 without restraints) Performing minimization step: 4958. Total energy = 5666.0335 kcal/mol (5659.1612 without restraints) Performing minimization step: 4959. Total energy = 5665.5352 kcal/mol (5658.6644 without restraints) Performing minimization step: 4960. Total energy = 5665.0373 kcal/mol (5658.1680 without restraints) Performing minimization step: 4961. Total energy = 5664.5399 kcal/mol (5657.6721 without restraints) Performing minimization step: 4962. Total energy = 5664.0431 kcal/mol (5657.1768 without restraints) Performing minimization step: 4963. Total energy = 5663.5465 kcal/mol (5656.6817 without restraints) Performing minimization step: 4964. Total energy = 5663.0503 kcal/mol (5656.1870 without restraints) Performing minimization step: 4965. Total energy = 5662.5546 kcal/mol (5655.6929 without restraints) Performing minimization step: 4966. Total energy = 5662.0593 kcal/mol (5655.1990 without restraints) Performing minimization step: 4967. Total energy = 5661.5642 kcal/mol (5654.7055 without restraints) Performing minimization step: 4968. Total energy = 5661.0694 kcal/mol (5654.2121 without restraints) Performing minimization step: 4969. Total energy = 5660.5751 kcal/mol (5653.7194 without restraints) Performing minimization step: 4970. Total energy = 5660.0810 kcal/mol (5653.2268 without restraints) Performing minimization step: 4971. Total energy = 5659.5875 kcal/mol (5652.7348 without restraints) Performing minimization step: 4972. Total energy = 5659.0941 kcal/mol (5652.2429 without restraints) Performing minimization step: 4973. Total energy = 5658.6011 kcal/mol (5651.7514 without restraints) Performing minimization step: 4974. Total energy = 5658.1087 kcal/mol (5651.2608 without restraints) Performing minimization step: 4975. Total energy = 5657.6168 kcal/mol (5650.7702 without restraints) Performing minimization step: 4976. Total energy = 5657.1252 kcal/mol (5650.2802 without restraints) Performing minimization step: 4977. Total energy = 5656.6339 kcal/mol (5649.7903 without restraints) Performing minimization step: 4978. Total energy = 5656.1429 kcal/mol (5649.3008 without restraints) Performing minimization step: 4979. Total energy = 5655.6520 kcal/mol (5648.8114 without restraints) Performing minimization step: 4980. Total energy = 5655.1617 kcal/mol (5648.3226 without restraints) Performing minimization step: 4981. Total energy = 5654.6717 kcal/mol (5647.8342 without restraints) Performing minimization step: 4982. Total energy = 5654.1819 kcal/mol (5647.3459 without restraints) Performing minimization step: 4983. Total energy = 5653.6925 kcal/mol (5646.8580 without restraints) Performing minimization step: 4984. Total energy = 5653.2035 kcal/mol (5646.3705 without restraints) Performing minimization step: 4985. Total energy = 5652.7150 kcal/mol (5645.8836 without restraints) Performing minimization step: 4986. Total energy = 5652.2268 kcal/mol (5645.3969 without restraints) Performing minimization step: 4987. Total energy = 5651.7385 kcal/mol (5644.9100 without restraints) Performing minimization step: 4988. Total energy = 5651.2514 kcal/mol (5644.4245 without restraints) Performing minimization step: 4989. Total energy = 5650.7644 kcal/mol (5643.9390 without restraints) Performing minimization step: 4990. Total energy = 5650.2780 kcal/mol (5643.4541 without restraints) Performing minimization step: 4991. Total energy = 5649.7918 kcal/mol (5642.9695 without restraints) Performing minimization step: 4992. Total energy = 5649.3062 kcal/mol (5642.4854 without restraints) Performing minimization step: 4993. Total energy = 5648.8204 kcal/mol (5642.0010 without restraints) Performing minimization step: 4994. Total energy = 5648.3352 kcal/mol (5641.5175 without restraints) Performing minimization step: 4995. Total energy = 5647.8505 kcal/mol (5641.0343 without restraints) Performing minimization step: 4996. Total energy = 5647.3662 kcal/mol (5640.5515 without restraints) Performing minimization step: 4997. Total energy = 5646.8821 kcal/mol (5640.0689 without restraints) Performing minimization step: 4998. Total energy = 5646.3982 kcal/mol (5639.5865 without restraints) Performing minimization step: 4999. Total energy = 5645.9144 kcal/mol (5639.1043 without restraints) Performing minimization step: 5000. Total energy = 5645.4311 kcal/mol (5638.6225 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/aac11be9/tmp/C12MA2_refx/C12MA2_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to C12MA2_refx.pdb DONE!