============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1.pdb ============================================================================= Atom's 1698 H6 residue renamed to RU3 Atom's 1697 H5 residue renamed to RU3 Atom's 1696 H3 residue renamed to RU3 Atom's 1695 HO'2 residue renamed to RU3 Atom's 1694 H2' residue renamed to RU3 Atom's 1693 H1' residue renamed to RU3 Atom's 1692 H3' residue renamed to RU3 Atom's 1691 H4' residue renamed to RU3 Atom's 1690 H5'2 residue renamed to RU3 Atom's 1689 H5'1 residue renamed to RU3 Atom's 1688 C6 residue renamed to RU3 Atom's 1687 C5 residue renamed to RU3 Atom's 1686 O4 residue renamed to RU3 Atom's 1685 C4 residue renamed to RU3 Atom's 1684 N3 residue renamed to RU3 Atom's 1683 O2 residue renamed to RU3 Atom's 1682 C2 residue renamed to RU3 Atom's 1681 N1 residue renamed to RU3 Atom's 1680 O2' residue renamed to RU3 Atom's 1679 C2' residue renamed to RU3 Atom's 1678 C1' residue renamed to RU3 Atom's 1677 O3' residue renamed to RU3 Atom's 1676 C3' residue renamed to RU3 Atom's 1675 O4' residue renamed to RU3 Atom's 1674 C4' residue renamed to RU3 Atom's 1673 C5' residue renamed to RU3 Atom's 1672 O5' residue renamed to RU3 Atom's 1671 OP1 residue renamed to RU3 Atom's 1670 OP2 residue renamed to RU3 Atom's 1669 P residue renamed to RU3 Missing atom added: ATOM 31 H3T RU3 A 53 10.184 -10.606 9.588 1.00 0.00 H Missing atom added: ATOM 2 OP3 G A 1 0.390 0.008 -2.350 1.00 0.00 O Number of atoms: 1700 Number of residues: 53 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 1830 Number of angles built: 3274 Number of dihedrals built: 4982 Number of impropers built: 360 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 1439046 Number of van der Waals pairs: 195729 Number of H-bonds built: 41 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 12 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 3316.6487 kcal/mol (3309.3414 without restraints) Performing minimization step: 2. Total energy = 3308.6952 kcal/mol (3301.3916 without restraints) Performing minimization step: 3. Total energy = 3300.7709 kcal/mol (3293.4708 without restraints) Performing minimization step: 4. Total energy = 3292.8755 kcal/mol (3285.5791 without restraints) Performing minimization step: 5. Total energy = 3285.0093 kcal/mol (3277.7164 without restraints) Performing minimization step: 6. Total energy = 3277.1723 kcal/mol (3269.8830 without restraints) Performing minimization step: 7. Total energy = 3269.3636 kcal/mol (3262.0779 without restraints) Performing minimization step: 8. Total energy = 3261.5843 kcal/mol (3254.3022 without restraints) Performing minimization step: 9. Total energy = 3253.8339 kcal/mol (3246.5554 without restraints) Performing minimization step: 10. Total energy = 3246.1124 kcal/mol (3238.8374 without restraints) Performing minimization step: 11. Total energy = 3238.4201 kcal/mol (3231.1487 without restraints) Performing minimization step: 12. Total energy = 3230.7561 kcal/mol (3223.4883 without restraints) Performing minimization step: 13. Total energy = 3223.1215 kcal/mol (3215.8574 without restraints) Performing minimization step: 14. Total energy = 3215.5150 kcal/mol (3208.2544 without restraints) Performing minimization step: 15. Total energy = 3207.9371 kcal/mol (3200.6800 without restraints) Performing minimization step: 16. Total energy = 3200.3876 kcal/mol (3193.1339 without restraints) Performing minimization step: 17. Total energy = 3192.8665 kcal/mol (3185.6164 without restraints) Performing minimization step: 18. Total energy = 3185.3741 kcal/mol (3178.1276 without restraints) Performing minimization step: 19. Total energy = 3177.9099 kcal/mol (3170.6670 without restraints) Performing minimization step: 20. Total energy = 3170.4744 kcal/mol (3163.2350 without restraints) Performing minimization step: 21. Total energy = 3163.0663 kcal/mol (3155.8304 without restraints) Performing minimization step: 22. Total energy = 3155.6871 kcal/mol (3148.4547 without restraints) Performing minimization step: 23. Total energy = 3148.3365 kcal/mol (3141.1077 without restraints) Performing minimization step: 24. Total energy = 3141.0141 kcal/mol (3133.7889 without restraints) Performing minimization step: 25. Total energy = 3133.7198 kcal/mol (3126.4981 without restraints) Performing minimization step: 26. Total energy = 3126.4540 kcal/mol (3119.2358 without restraints) Performing minimization step: 27. Total energy = 3119.2160 kcal/mol (3112.0013 without restraints) Performing minimization step: 28. Total energy = 3112.0060 kcal/mol (3104.7948 without restraints) Performing minimization step: 29. Total energy = 3104.8241 kcal/mol (3097.6164 without restraints) Performing minimization step: 30. Total energy = 3097.6701 kcal/mol (3090.4660 without restraints) Performing minimization step: 31. Total energy = 3090.5441 kcal/mol (3083.3434 without restraints) Performing minimization step: 32. Total energy = 3083.4460 kcal/mol (3076.2489 without restraints) Performing minimization step: 33. Total energy = 3076.3760 kcal/mol (3069.1827 without restraints) Performing minimization step: 34. Total energy = 3069.3334 kcal/mol (3062.1432 without restraints) Performing minimization step: 35. Total energy = 3062.3185 kcal/mol (3055.1318 without restraints) Performing minimization step: 36. Total energy = 3055.3314 kcal/mol (3048.1481 without restraints) Performing minimization step: 37. Total energy = 3048.3717 kcal/mol (3041.1918 without restraints) Performing minimization step: 38. Total energy = 3041.4396 kcal/mol (3034.2633 without restraints) Performing minimization step: 39. Total energy = 3034.5351 kcal/mol (3027.3623 without restraints) Performing minimization step: 40. Total energy = 3027.6579 kcal/mol (3020.4885 without restraints) Performing minimization step: 41. Total energy = 3020.8083 kcal/mol (3013.6424 without restraints) Performing minimization step: 42. Total energy = 3013.9859 kcal/mol (3006.8234 without restraints) Performing minimization step: 43. Total energy = 3007.1908 kcal/mol (3000.0318 without restraints) Performing minimization step: 44. Total energy = 3000.4232 kcal/mol (2993.2676 without restraints) Performing minimization step: 45. Total energy = 2993.6828 kcal/mol (2986.5307 without restraints) Performing minimization step: 46. Total energy = 2986.9696 kcal/mol (2979.8209 without restraints) Performing minimization step: 47. Total energy = 2980.2834 kcal/mol (2973.1379 without restraints) Performing minimization step: 48. Total energy = 2973.6239 kcal/mol (2966.4820 without restraints) Performing minimization step: 49. Total energy = 2966.9921 kcal/mol (2959.8537 without restraints) Performing minimization step: 50. Total energy = 2960.3875 kcal/mol (2953.2525 without restraints) Performing minimization step: 51. Total energy = 2953.8093 kcal/mol (2946.6776 without restraints) Performing minimization step: 52. Total energy = 2947.2576 kcal/mol (2940.1294 without restraints) Performing minimization step: 53. Total energy = 2940.7332 kcal/mol (2933.6085 without restraints) Performing minimization step: 54. Total energy = 2934.2352 kcal/mol (2927.1137 without restraints) Performing minimization step: 55. Total energy = 2927.7641 kcal/mol (2920.6461 without restraints) Performing minimization step: 56. Total energy = 2921.3199 kcal/mol (2914.2053 without restraints) Performing minimization step: 57. Total energy = 2914.9024 kcal/mol (2907.7912 without restraints) Performing minimization step: 58. Total energy = 2908.5115 kcal/mol (2901.4038 without restraints) Performing minimization step: 59. Total energy = 2902.1471 kcal/mol (2895.0427 without restraints) Performing minimization step: 60. Total energy = 2895.8090 kcal/mol (2888.7080 without restraints) Performing minimization step: 61. Total energy = 2889.4974 kcal/mol (2882.3997 without restraints) Performing minimization step: 62. Total energy = 2883.2119 kcal/mol (2876.1176 without restraints) Performing minimization step: 63. Total energy = 2876.9525 kcal/mol (2869.8615 without restraints) Performing minimization step: 64. Total energy = 2870.7199 kcal/mol (2863.6323 without restraints) Performing minimization step: 65. Total energy = 2864.5136 kcal/mol (2857.4294 without restraints) Performing minimization step: 66. Total energy = 2858.3333 kcal/mol (2851.2524 without restraints) Performing minimization step: 67. Total energy = 2852.1789 kcal/mol (2845.1013 without restraints) Performing minimization step: 68. Total energy = 2846.0505 kcal/mol (2838.9763 without restraints) Performing minimization step: 69. Total energy = 2839.9481 kcal/mol (2832.8772 without restraints) Performing minimization step: 70. Total energy = 2833.8717 kcal/mol (2826.8042 without restraints) Performing minimization step: 71. Total energy = 2827.8212 kcal/mol (2820.7569 without restraints) Performing minimization step: 72. Total energy = 2821.7963 kcal/mol (2814.7354 without restraints) Performing minimization step: 73. Total energy = 2815.7971 kcal/mol (2808.7394 without restraints) Performing minimization step: 74. Total energy = 2809.8236 kcal/mol (2802.7693 without restraints) Performing minimization step: 75. Total energy = 2803.8760 kcal/mol (2796.8251 without restraints) Performing minimization step: 76. Total energy = 2797.9539 kcal/mol (2790.9062 without restraints) Performing minimization step: 77. Total energy = 2792.0571 kcal/mol (2785.0127 without restraints) Performing minimization step: 78. Total energy = 2786.1859 kcal/mol (2779.1448 without restraints) Performing minimization step: 79. Total energy = 2780.3398 kcal/mol (2773.3020 without restraints) Performing minimization step: 80. Total energy = 2774.5191 kcal/mol (2767.4845 without restraints) Performing minimization step: 81. Total energy = 2768.7237 kcal/mol (2761.6923 without restraints) Performing minimization step: 82. Total energy = 2762.9536 kcal/mol (2755.9256 without restraints) Performing minimization step: 83. Total energy = 2757.2087 kcal/mol (2750.1840 without restraints) Performing minimization step: 84. Total energy = 2751.4887 kcal/mol (2744.4673 without restraints) Performing minimization step: 85. Total energy = 2745.7943 kcal/mol (2738.7760 without restraints) Performing minimization step: 86. Total energy = 2740.1246 kcal/mol (2733.1098 without restraints) Performing minimization step: 87. Total energy = 2734.4798 kcal/mol (2727.4680 without restraints) Performing minimization step: 88. Total energy = 2728.8598 kcal/mol (2721.8513 without restraints) Performing minimization step: 89. Total energy = 2723.2649 kcal/mol (2716.2596 without restraints) Performing minimization step: 90. Total energy = 2717.6943 kcal/mol (2710.6922 without restraints) Performing minimization step: 91. Total energy = 2712.1485 kcal/mol (2705.1497 without restraints) Performing minimization step: 92. Total energy = 2706.6274 kcal/mol (2699.6318 without restraints) Performing minimization step: 93. Total energy = 2701.1308 kcal/mol (2694.1385 without restraints) Performing minimization step: 94. Total energy = 2695.6588 kcal/mol (2688.6696 without restraints) Performing minimization step: 95. Total energy = 2690.2109 kcal/mol (2683.2250 without restraints) Performing minimization step: 96. Total energy = 2684.7878 kcal/mol (2677.8051 without restraints) Performing minimization step: 97. Total energy = 2679.3888 kcal/mol (2672.4092 without restraints) Performing minimization step: 98. Total energy = 2674.0141 kcal/mol (2667.0377 without restraints) Performing minimization step: 99. Total energy = 2668.6633 kcal/mol (2661.6900 without restraints) Performing minimization step: 100. Total energy = 2663.3370 kcal/mol (2656.3669 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 101. Total energy = 2658.0345 kcal/mol (2651.0677 without restraints) Performing minimization step: 102. Total energy = 2652.7559 kcal/mol (2645.7922 without restraints) Performing minimization step: 103. Total energy = 2647.5013 kcal/mol (2640.5408 without restraints) Performing minimization step: 104. Total energy = 2642.2703 kcal/mol (2635.3129 without restraints) Performing minimization step: 105. Total energy = 2637.0633 kcal/mol (2630.1091 without restraints) Performing minimization step: 106. Total energy = 2631.8801 kcal/mol (2624.9290 without restraints) Performing minimization step: 107. Total energy = 2626.7208 kcal/mol (2619.7728 without restraints) Performing minimization step: 108. Total energy = 2621.5849 kcal/mol (2614.6400 without restraints) Performing minimization step: 109. Total energy = 2616.4727 kcal/mol (2609.5309 without restraints) Performing minimization step: 110. Total energy = 2611.3837 kcal/mol (2604.4451 without restraints) Performing minimization step: 111. Total energy = 2606.3184 kcal/mol (2599.3830 without restraints) Performing minimization step: 112. Total energy = 2601.2762 kcal/mol (2594.3439 without restraints) Performing minimization step: 113. Total energy = 2596.2574 kcal/mol (2589.3281 without restraints) Performing minimization step: 114. Total energy = 2591.2616 kcal/mol (2584.3354 without restraints) Performing minimization step: 115. Total energy = 2586.2891 kcal/mol (2579.3661 without restraints) Performing minimization step: 116. Total energy = 2581.3395 kcal/mol (2574.4195 without restraints) Performing minimization step: 117. Total energy = 2576.4128 kcal/mol (2569.4959 without restraints) Performing minimization step: 118. Total energy = 2571.5091 kcal/mol (2564.5953 without restraints) Performing minimization step: 119. Total energy = 2566.6282 kcal/mol (2559.7174 without restraints) Performing minimization step: 120. Total energy = 2561.7700 kcal/mol (2554.8623 without restraints) Performing minimization step: 121. Total energy = 2556.9345 kcal/mol (2550.0298 without restraints) Performing minimization step: 122. Total energy = 2552.1216 kcal/mol (2545.2201 without restraints) Performing minimization step: 123. Total energy = 2547.3313 kcal/mol (2540.4325 without restraints) Performing minimization step: 124. Total energy = 2542.5630 kcal/mol (2535.6674 without restraints) Performing minimization step: 125. Total energy = 2537.8173 kcal/mol (2530.9248 without restraints) Performing minimization step: 126. Total energy = 2533.0942 kcal/mol (2526.2047 without restraints) Performing minimization step: 127. Total energy = 2528.3936 kcal/mol (2521.5069 without restraints) Performing minimization step: 128. Total energy = 2523.7147 kcal/mol (2516.8312 without restraints) Performing minimization step: 129. Total energy = 2519.0584 kcal/mol (2512.1781 without restraints) Performing minimization step: 130. Total energy = 2514.4239 kcal/mol (2507.5464 without restraints) Performing minimization step: 131. Total energy = 2509.8116 kcal/mol (2502.9371 without restraints) Performing minimization step: 132. Total energy = 2505.2208 kcal/mol (2498.3492 without restraints) Performing minimization step: 133. Total energy = 2500.6517 kcal/mol (2493.7832 without restraints) Performing minimization step: 134. Total energy = 2496.1046 kcal/mol (2489.2391 without restraints) Performing minimization step: 135. Total energy = 2491.5792 kcal/mol (2484.7165 without restraints) Performing minimization step: 136. Total energy = 2487.0754 kcal/mol (2480.2159 without restraints) Performing minimization step: 137. Total energy = 2482.5932 kcal/mol (2475.7365 without restraints) Performing minimization step: 138. Total energy = 2478.1323 kcal/mol (2471.2786 without restraints) Performing minimization step: 139. Total energy = 2473.6928 kcal/mol (2466.8421 without restraints) Performing minimization step: 140. Total energy = 2469.2747 kcal/mol (2462.4268 without restraints) Performing minimization step: 141. Total energy = 2464.8773 kcal/mol (2458.0324 without restraints) Performing minimization step: 142. Total energy = 2460.5009 kcal/mol (2453.6588 without restraints) Performing minimization step: 143. Total energy = 2456.1462 kcal/mol (2449.3072 without restraints) Performing minimization step: 144. Total energy = 2451.8125 kcal/mol (2444.9763 without restraints) Performing minimization step: 145. Total energy = 2447.5001 kcal/mol (2440.6668 without restraints) Performing minimization step: 146. Total energy = 2443.2081 kcal/mol (2436.3777 without restraints) Performing minimization step: 147. Total energy = 2438.9368 kcal/mol (2432.1093 without restraints) Performing minimization step: 148. Total energy = 2434.6865 kcal/mol (2427.8619 without restraints) Performing minimization step: 149. Total energy = 2430.4566 kcal/mol (2423.6348 without restraints) Performing minimization step: 150. Total energy = 2426.2471 kcal/mol (2419.4282 without restraints) Performing minimization step: 151. Total energy = 2422.0578 kcal/mol (2415.2418 without restraints) Performing minimization step: 152. Total energy = 2417.8893 kcal/mol (2411.0762 without restraints) Performing minimization step: 153. Total energy = 2413.7408 kcal/mol (2406.9307 without restraints) Performing minimization step: 154. Total energy = 2409.6124 kcal/mol (2402.8049 without restraints) Performing minimization step: 155. Total energy = 2405.5043 kcal/mol (2398.6996 without restraints) Performing minimization step: 156. Total energy = 2401.4164 kcal/mol (2394.6146 without restraints) Performing minimization step: 157. Total energy = 2397.3484 kcal/mol (2390.5494 without restraints) Performing minimization step: 158. Total energy = 2393.3002 kcal/mol (2386.5040 without restraints) Performing minimization step: 159. Total energy = 2389.2718 kcal/mol (2382.4784 without restraints) Performing minimization step: 160. Total energy = 2385.2631 kcal/mol (2378.4725 without restraints) Performing minimization step: 161. Total energy = 2381.2735 kcal/mol (2374.4857 without restraints) Performing minimization step: 162. Total energy = 2377.3041 kcal/mol (2370.5191 without restraints) Performing minimization step: 163. Total energy = 2373.3540 kcal/mol (2366.5718 without restraints) Performing minimization step: 164. Total energy = 2369.4234 kcal/mol (2362.6439 without restraints) Performing minimization step: 165. Total energy = 2365.5120 kcal/mol (2358.7353 without restraints) Performing minimization step: 166. Total energy = 2361.6200 kcal/mol (2354.8461 without restraints) Performing minimization step: 167. Total energy = 2357.7470 kcal/mol (2350.9758 without restraints) Performing minimization step: 168. Total energy = 2353.8930 kcal/mol (2347.1246 without restraints) Performing minimization step: 169. Total energy = 2350.0579 kcal/mol (2343.2921 without restraints) Performing minimization step: 170. Total energy = 2346.2416 kcal/mol (2339.4785 without restraints) Performing minimization step: 171. Total energy = 2342.4441 kcal/mol (2335.6838 without restraints) Performing minimization step: 172. Total energy = 2338.6655 kcal/mol (2331.9080 without restraints) Performing minimization step: 173. Total energy = 2334.9056 kcal/mol (2328.1508 without restraints) Performing minimization step: 174. Total energy = 2331.1637 kcal/mol (2324.4116 without restraints) Performing minimization step: 175. Total energy = 2327.4406 kcal/mol (2320.6912 without restraints) Performing minimization step: 176. Total energy = 2323.7360 kcal/mol (2316.9892 without restraints) Performing minimization step: 177. Total energy = 2320.0496 kcal/mol (2313.3055 without restraints) Performing minimization step: 178. Total energy = 2316.3814 kcal/mol (2309.6400 without restraints) Performing minimization step: 179. Total energy = 2312.7314 kcal/mol (2305.9926 without restraints) Performing minimization step: 180. Total energy = 2309.0994 kcal/mol (2302.3633 without restraints) Performing minimization step: 181. Total energy = 2305.4856 kcal/mol (2298.7521 without restraints) Performing minimization step: 182. Total energy = 2301.8893 kcal/mol (2295.1585 without restraints) Performing minimization step: 183. Total energy = 2298.3109 kcal/mol (2291.5827 without restraints) Performing minimization step: 184. Total energy = 2294.7503 kcal/mol (2288.0248 without restraints) Performing minimization step: 185. Total energy = 2291.2074 kcal/mol (2284.4845 without restraints) Performing minimization step: 186. Total energy = 2287.6819 kcal/mol (2280.9615 without restraints) Performing minimization step: 187. Total energy = 2284.1734 kcal/mol (2277.4555 without restraints) Performing minimization step: 188. Total energy = 2280.6817 kcal/mol (2273.9665 without restraints) Performing minimization step: 189. Total energy = 2277.2081 kcal/mol (2270.4956 without restraints) Performing minimization step: 190. Total energy = 2273.7516 kcal/mol (2267.0416 without restraints) Performing minimization step: 191. Total energy = 2270.3121 kcal/mol (2263.6047 without restraints) Performing minimization step: 192. Total energy = 2266.8896 kcal/mol (2260.1848 without restraints) Performing minimization step: 193. Total energy = 2263.4841 kcal/mol (2256.7818 without restraints) Performing minimization step: 194. Total energy = 2260.0953 kcal/mol (2253.3956 without restraints) Performing minimization step: 195. Total energy = 2256.7233 kcal/mol (2250.0261 without restraints) Performing minimization step: 196. Total energy = 2253.3679 kcal/mol (2246.6732 without restraints) Performing minimization step: 197. Total energy = 2250.0291 kcal/mol (2243.3370 without restraints) Performing minimization step: 198. Total energy = 2246.7067 kcal/mol (2240.0171 without restraints) Performing minimization step: 199. Total energy = 2243.4011 kcal/mol (2236.7139 without restraints) Performing minimization step: 200. Total energy = 2240.1113 kcal/mol (2233.4267 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 201. Total energy = 2236.8376 kcal/mol (2230.1555 without restraints) Performing minimization step: 202. Total energy = 2233.5799 kcal/mol (2226.9002 without restraints) Performing minimization step: 203. Total energy = 2230.3384 kcal/mol (2223.6613 without restraints) Performing minimization step: 204. Total energy = 2227.1129 kcal/mol (2220.4382 without restraints) Performing minimization step: 205. Total energy = 2223.9028 kcal/mol (2217.2306 without restraints) Performing minimization step: 206. Total energy = 2220.7088 kcal/mol (2214.0391 without restraints) Performing minimization step: 207. Total energy = 2217.5305 kcal/mol (2210.8632 without restraints) Performing minimization step: 208. Total energy = 2214.3677 kcal/mol (2207.7029 without restraints) Performing minimization step: 209. Total energy = 2211.2203 kcal/mol (2204.5579 without restraints) Performing minimization step: 210. Total energy = 2208.0882 kcal/mol (2201.4282 without restraints) Performing minimization step: 211. Total energy = 2204.9713 kcal/mol (2198.3138 without restraints) Performing minimization step: 212. Total energy = 2201.8698 kcal/mol (2195.2147 without restraints) Performing minimization step: 213. Total energy = 2198.7837 kcal/mol (2192.1311 without restraints) Performing minimization step: 214. Total energy = 2195.7126 kcal/mol (2189.0623 without restraints) Performing minimization step: 215. Total energy = 2192.6564 kcal/mol (2186.0084 without restraints) Performing minimization step: 216. Total energy = 2189.6149 kcal/mol (2182.9692 without restraints) Performing minimization step: 217. Total energy = 2186.5882 kcal/mol (2179.9450 without restraints) Performing minimization step: 218. Total energy = 2183.5763 kcal/mol (2176.9355 without restraints) Performing minimization step: 219. Total energy = 2180.5789 kcal/mol (2173.9404 without restraints) Performing minimization step: 220. Total energy = 2177.5959 kcal/mol (2170.9597 without restraints) Performing minimization step: 221. Total energy = 2174.6274 kcal/mol (2167.9936 without restraints) Performing minimization step: 222. Total energy = 2171.6734 kcal/mol (2165.0420 without restraints) Performing minimization step: 223. Total energy = 2168.7337 kcal/mol (2162.1047 without restraints) Performing minimization step: 224. Total energy = 2165.8078 kcal/mol (2159.1811 without restraints) Performing minimization step: 225. Total energy = 2162.8961 kcal/mol (2156.2717 without restraints) Performing minimization step: 226. Total energy = 2159.9985 kcal/mol (2153.3764 without restraints) Performing minimization step: 227. Total energy = 2157.1149 kcal/mol (2150.4951 without restraints) Performing minimization step: 228. Total energy = 2154.2451 kcal/mol (2147.6276 without restraints) Performing minimization step: 229. Total energy = 2151.3888 kcal/mol (2144.7734 without restraints) Performing minimization step: 230. Total energy = 2148.5462 kcal/mol (2141.9332 without restraints) Performing minimization step: 231. Total energy = 2145.7173 kcal/mol (2139.1066 without restraints) Performing minimization step: 232. Total energy = 2142.9019 kcal/mol (2136.2935 without restraints) Performing minimization step: 233. Total energy = 2140.0995 kcal/mol (2133.4934 without restraints) Performing minimization step: 234. Total energy = 2137.3108 kcal/mol (2130.7070 without restraints) Performing minimization step: 235. Total energy = 2134.5353 kcal/mol (2127.9337 without restraints) Performing minimization step: 236. Total energy = 2131.7730 kcal/mol (2125.1737 without restraints) Performing minimization step: 237. Total energy = 2129.0237 kcal/mol (2122.4266 without restraints) Performing minimization step: 238. Total energy = 2126.2874 kcal/mol (2119.6925 without restraints) Performing minimization step: 239. Total energy = 2123.5640 kcal/mol (2116.9714 without restraints) Performing minimization step: 240. Total energy = 2120.8534 kcal/mol (2114.2629 without restraints) Performing minimization step: 241. Total energy = 2118.1558 kcal/mol (2111.5676 without restraints) Performing minimization step: 242. Total energy = 2115.4703 kcal/mol (2108.8842 without restraints) Performing minimization step: 243. Total energy = 2112.7975 kcal/mol (2106.2136 without restraints) Performing minimization step: 244. Total energy = 2110.1372 kcal/mol (2103.5555 without restraints) Performing minimization step: 245. Total energy = 2107.4890 kcal/mol (2100.9095 without restraints) Performing minimization step: 246. Total energy = 2104.8534 kcal/mol (2098.2761 without restraints) Performing minimization step: 247. Total energy = 2102.2301 kcal/mol (2095.6549 without restraints) Performing minimization step: 248. Total energy = 2099.6189 kcal/mol (2093.0459 without restraints) Performing minimization step: 249. Total energy = 2097.0198 kcal/mol (2090.4489 without restraints) Performing minimization step: 250. Total energy = 2094.4326 kcal/mol (2087.8639 without restraints) Performing minimization step: 251. Total energy = 2091.8572 kcal/mol (2085.2907 without restraints) Performing minimization step: 252. Total energy = 2089.2936 kcal/mol (2082.7292 without restraints) Performing minimization step: 253. Total energy = 2086.7419 kcal/mol (2080.1796 without restraints) Performing minimization step: 254. Total energy = 2084.2016 kcal/mol (2077.6415 without restraints) Performing minimization step: 255. Total energy = 2081.6731 kcal/mol (2075.1149 without restraints) Performing minimization step: 256. Total energy = 2079.1563 kcal/mol (2072.6003 without restraints) Performing minimization step: 257. Total energy = 2076.6509 kcal/mol (2070.0970 without restraints) Performing minimization step: 258. Total energy = 2074.1567 kcal/mol (2067.6050 without restraints) Performing minimization step: 259. Total energy = 2071.6737 kcal/mol (2065.1239 without restraints) Performing minimization step: 260. Total energy = 2069.2018 kcal/mol (2062.6543 without restraints) Performing minimization step: 261. Total energy = 2066.7413 kcal/mol (2060.1958 without restraints) Performing minimization step: 262. Total energy = 2064.2923 kcal/mol (2057.7490 without restraints) Performing minimization step: 263. Total energy = 2061.8537 kcal/mol (2055.3124 without restraints) Performing minimization step: 264. Total energy = 2059.4261 kcal/mol (2052.8869 without restraints) Performing minimization step: 265. Total energy = 2057.0094 kcal/mol (2050.4722 without restraints) Performing minimization step: 266. Total energy = 2054.6034 kcal/mol (2048.0683 without restraints) Performing minimization step: 267. Total energy = 2052.2081 kcal/mol (2045.6750 without restraints) Performing minimization step: 268. Total energy = 2049.8234 kcal/mol (2043.2923 without restraints) Performing minimization step: 269. Total energy = 2047.4492 kcal/mol (2040.9202 without restraints) Performing minimization step: 270. Total energy = 2045.0856 kcal/mol (2038.5586 without restraints) Performing minimization step: 271. Total energy = 2042.7324 kcal/mol (2036.2074 without restraints) Performing minimization step: 272. Total energy = 2040.3894 kcal/mol (2033.8663 without restraints) Performing minimization step: 273. Total energy = 2038.0566 kcal/mol (2031.5357 without restraints) Performing minimization step: 274. Total energy = 2035.7342 kcal/mol (2029.2153 without restraints) Performing minimization step: 275. Total energy = 2033.4218 kcal/mol (2026.9047 without restraints) Performing minimization step: 276. Total energy = 2031.1194 kcal/mol (2024.6045 without restraints) Performing minimization step: 277. Total energy = 2028.8272 kcal/mol (2022.3142 without restraints) Performing minimization step: 278. Total energy = 2026.5442 kcal/mol (2020.0332 without restraints) Performing minimization step: 279. Total energy = 2024.2720 kcal/mol (2017.7631 without restraints) Performing minimization step: 280. Total energy = 2022.0093 kcal/mol (2015.5024 without restraints) Performing minimization step: 281. Total energy = 2019.7562 kcal/mol (2013.2512 without restraints) Performing minimization step: 282. Total energy = 2017.5131 kcal/mol (2011.0101 without restraints) Performing minimization step: 283. Total energy = 2015.2794 kcal/mol (2008.7783 without restraints) Performing minimization step: 284. Total energy = 2013.0554 kcal/mol (2006.5563 without restraints) Performing minimization step: 285. Total energy = 2010.8407 kcal/mol (2004.3435 without restraints) Performing minimization step: 286. Total energy = 2008.6354 kcal/mol (2002.1402 without restraints) Performing minimization step: 287. Total energy = 2006.4394 kcal/mol (1999.9462 without restraints) Performing minimization step: 288. Total energy = 2004.2529 kcal/mol (1997.7616 without restraints) Performing minimization step: 289. Total energy = 2002.0755 kcal/mol (1995.5861 without restraints) Performing minimization step: 290. Total energy = 1999.9073 kcal/mol (1993.4198 without restraints) Performing minimization step: 291. Total energy = 1997.7481 kcal/mol (1991.2626 without restraints) Performing minimization step: 292. Total energy = 1995.5980 kcal/mol (1989.1144 without restraints) Performing minimization step: 293. Total energy = 1993.4567 kcal/mol (1986.9751 without restraints) Performing minimization step: 294. Total energy = 1991.3246 kcal/mol (1984.8448 without restraints) Performing minimization step: 295. Total energy = 1989.2012 kcal/mol (1982.7234 without restraints) Performing minimization step: 296. Total energy = 1987.0867 kcal/mol (1980.6107 without restraints) Performing minimization step: 297. Total energy = 1984.9809 kcal/mol (1978.5068 without restraints) Performing minimization step: 298. Total energy = 1982.8838 kcal/mol (1976.4117 without restraints) Performing minimization step: 299. Total energy = 1980.7956 kcal/mol (1974.3254 without restraints) Performing minimization step: 300. Total energy = 1978.7156 kcal/mol (1972.2473 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 301. Total energy = 1976.6442 kcal/mol (1970.1777 without restraints) Performing minimization step: 302. Total energy = 1974.5807 kcal/mol (1968.1160 without restraints) Performing minimization step: 303. Total energy = 1972.5263 kcal/mol (1966.0637 without restraints) Performing minimization step: 304. Total energy = 1970.4802 kcal/mol (1964.0194 without restraints) Performing minimization step: 305. Total energy = 1968.4431 kcal/mol (1961.9842 without restraints) Performing minimization step: 306. Total energy = 1966.4136 kcal/mol (1959.9566 without restraints) Performing minimization step: 307. Total energy = 1964.3921 kcal/mol (1957.9370 without restraints) Performing minimization step: 308. Total energy = 1962.3789 kcal/mol (1955.9256 without restraints) Performing minimization step: 309. Total energy = 1960.3734 kcal/mol (1953.9220 without restraints) Performing minimization step: 310. Total energy = 1958.3770 kcal/mol (1951.9274 without restraints) Performing minimization step: 311. Total energy = 1956.3878 kcal/mol (1949.9402 without restraints) Performing minimization step: 312. Total energy = 1954.4070 kcal/mol (1947.9611 without restraints) Performing minimization step: 313. Total energy = 1952.4341 kcal/mol (1945.9902 without restraints) Performing minimization step: 314. Total energy = 1950.4691 kcal/mol (1944.0270 without restraints) Performing minimization step: 315. Total energy = 1948.5118 kcal/mol (1942.0715 without restraints) Performing minimization step: 316. Total energy = 1946.5621 kcal/mol (1940.1236 without restraints) Performing minimization step: 317. Total energy = 1944.6203 kcal/mol (1938.1837 without restraints) Performing minimization step: 318. Total energy = 1942.6862 kcal/mol (1936.2515 without restraints) Performing minimization step: 319. Total energy = 1940.7598 kcal/mol (1934.3269 without restraints) Performing minimization step: 320. Total energy = 1938.8410 kcal/mol (1932.4099 without restraints) Performing minimization step: 321. Total energy = 1936.9297 kcal/mol (1930.5005 without restraints) Performing minimization step: 322. Total energy = 1935.0260 kcal/mol (1928.5986 without restraints) Performing minimization step: 323. Total energy = 1933.1299 kcal/mol (1926.7043 without restraints) Performing minimization step: 324. Total energy = 1931.2410 kcal/mol (1924.8172 without restraints) Performing minimization step: 325. Total energy = 1929.3595 kcal/mol (1922.9376 without restraints) Performing minimization step: 326. Total energy = 1927.4853 kcal/mol (1921.0652 without restraints) Performing minimization step: 327. Total energy = 1925.6184 kcal/mol (1919.2001 without restraints) Performing minimization step: 328. Total energy = 1923.7588 kcal/mol (1917.3424 without restraints) Performing minimization step: 329. Total energy = 1921.9064 kcal/mol (1915.4918 without restraints) Performing minimization step: 330. Total energy = 1920.0610 kcal/mol (1913.6483 without restraints) Performing minimization step: 331. Total energy = 1918.2228 kcal/mol (1911.8118 without restraints) Performing minimization step: 332. Total energy = 1916.3918 kcal/mol (1909.9826 without restraints) Performing minimization step: 333. Total energy = 1914.5679 kcal/mol (1908.1607 without restraints) Performing minimization step: 334. Total energy = 1912.7511 kcal/mol (1906.3456 without restraints) Performing minimization step: 335. Total energy = 1910.9412 kcal/mol (1904.5375 without restraints) Performing minimization step: 336. Total energy = 1909.1381 kcal/mol (1902.7361 without restraints) Performing minimization step: 337. Total energy = 1907.3420 kcal/mol (1900.9418 without restraints) Performing minimization step: 338. Total energy = 1905.5526 kcal/mol (1899.1542 without restraints) Performing minimization step: 339. Total energy = 1903.7702 kcal/mol (1897.3736 without restraints) Performing minimization step: 340. Total energy = 1901.9945 kcal/mol (1895.5998 without restraints) Performing minimization step: 341. Total energy = 1900.2258 kcal/mol (1893.8330 without restraints) Performing minimization step: 342. Total energy = 1898.4638 kcal/mol (1892.0727 without restraints) Performing minimization step: 343. Total energy = 1896.7084 kcal/mol (1890.3191 without restraints) Performing minimization step: 344. Total energy = 1894.9598 kcal/mol (1888.5722 without restraints) Performing minimization step: 345. Total energy = 1893.2177 kcal/mol (1886.8319 without restraints) Performing minimization step: 346. Total energy = 1891.4819 kcal/mol (1885.0979 without restraints) Performing minimization step: 347. Total energy = 1889.7529 kcal/mol (1883.3707 without restraints) Performing minimization step: 348. Total energy = 1888.0304 kcal/mol (1881.6501 without restraints) Performing minimization step: 349. Total energy = 1886.3148 kcal/mol (1879.9362 without restraints) Performing minimization step: 350. Total energy = 1884.6053 kcal/mol (1878.2285 without restraints) Performing minimization step: 351. Total energy = 1882.9021 kcal/mol (1876.5271 without restraints) Performing minimization step: 352. Total energy = 1881.2055 kcal/mol (1874.8322 without restraints) Performing minimization step: 353. Total energy = 1879.5147 kcal/mol (1873.1433 without restraints) Performing minimization step: 354. Total energy = 1877.8308 kcal/mol (1871.4611 without restraints) Performing minimization step: 355. Total energy = 1876.1530 kcal/mol (1869.7852 without restraints) Performing minimization step: 356. Total energy = 1874.4817 kcal/mol (1868.1156 without restraints) Performing minimization step: 357. Total energy = 1872.8169 kcal/mol (1866.4526 without restraints) Performing minimization step: 358. Total energy = 1871.1582 kcal/mol (1864.7957 without restraints) Performing minimization step: 359. Total energy = 1869.5055 kcal/mol (1863.1448 without restraints) Performing minimization step: 360. Total energy = 1867.8589 kcal/mol (1861.5000 without restraints) Performing minimization step: 361. Total energy = 1866.2185 kcal/mol (1859.8614 without restraints) Performing minimization step: 362. Total energy = 1864.5842 kcal/mol (1858.2289 without restraints) Performing minimization step: 363. Total energy = 1862.9558 kcal/mol (1856.6023 without restraints) Performing minimization step: 364. Total energy = 1861.3337 kcal/mol (1854.9819 without restraints) Performing minimization step: 365. Total energy = 1859.7176 kcal/mol (1853.3676 without restraints) Performing minimization step: 366. Total energy = 1858.1073 kcal/mol (1851.7589 without restraints) Performing minimization step: 367. Total energy = 1856.5028 kcal/mol (1850.1564 without restraints) Performing minimization step: 368. Total energy = 1854.9046 kcal/mol (1848.5599 without restraints) Performing minimization step: 369. Total energy = 1853.3122 kcal/mol (1846.9694 without restraints) Performing minimization step: 370. Total energy = 1851.7258 kcal/mol (1845.3847 without restraints) Performing minimization step: 371. Total energy = 1850.1451 kcal/mol (1843.8058 without restraints) Performing minimization step: 372. Total energy = 1848.5705 kcal/mol (1842.2330 without restraints) Performing minimization step: 373. Total energy = 1847.0013 kcal/mol (1840.6656 without restraints) Performing minimization step: 374. Total energy = 1845.4381 kcal/mol (1839.1041 without restraints) Performing minimization step: 375. Total energy = 1843.8803 kcal/mol (1837.5479 without restraints) Performing minimization step: 376. Total energy = 1842.3283 kcal/mol (1835.9978 without restraints) Performing minimization step: 377. Total energy = 1840.7825 kcal/mol (1834.4539 without restraints) Performing minimization step: 378. Total energy = 1839.2421 kcal/mol (1832.9152 without restraints) Performing minimization step: 379. Total energy = 1837.7074 kcal/mol (1831.3824 without restraints) Performing minimization step: 380. Total energy = 1836.1783 kcal/mol (1829.8552 without restraints) Performing minimization step: 381. Total energy = 1834.6547 kcal/mol (1828.3332 without restraints) Performing minimization step: 382. Total energy = 1833.1370 kcal/mol (1826.8172 without restraints) Performing minimization step: 383. Total energy = 1831.6243 kcal/mol (1825.3064 without restraints) Performing minimization step: 384. Total energy = 1830.1178 kcal/mol (1823.8016 without restraints) Performing minimization step: 385. Total energy = 1828.6164 kcal/mol (1822.3020 without restraints) Performing minimization step: 386. Total energy = 1827.1209 kcal/mol (1820.8082 without restraints) Performing minimization step: 387. Total energy = 1825.6302 kcal/mol (1819.3195 without restraints) Performing minimization step: 388. Total energy = 1824.1456 kcal/mol (1817.8366 without restraints) Performing minimization step: 389. Total energy = 1822.6663 kcal/mol (1816.3591 without restraints) Performing minimization step: 390. Total energy = 1821.1929 kcal/mol (1814.8875 without restraints) Performing minimization step: 391. Total energy = 1819.7245 kcal/mol (1813.4207 without restraints) Performing minimization step: 392. Total energy = 1818.2613 kcal/mol (1811.9595 without restraints) Performing minimization step: 393. Total energy = 1816.8034 kcal/mol (1810.5034 without restraints) Performing minimization step: 394. Total energy = 1815.3509 kcal/mol (1809.0528 without restraints) Performing minimization step: 395. Total energy = 1813.9040 kcal/mol (1807.6075 without restraints) Performing minimization step: 396. Total energy = 1812.4622 kcal/mol (1806.1676 without restraints) Performing minimization step: 397. Total energy = 1811.0257 kcal/mol (1804.7329 without restraints) Performing minimization step: 398. Total energy = 1809.5943 kcal/mol (1803.3032 without restraints) Performing minimization step: 399. Total energy = 1808.1678 kcal/mol (1801.8786 without restraints) Performing minimization step: 400. Total energy = 1806.7470 kcal/mol (1800.4596 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 401. Total energy = 1805.3315 kcal/mol (1799.0458 without restraints) Performing minimization step: 402. Total energy = 1803.9210 kcal/mol (1797.6372 without restraints) Performing minimization step: 403. Total energy = 1802.5156 kcal/mol (1796.2336 without restraints) Performing minimization step: 404. Total energy = 1801.1155 kcal/mol (1794.8352 without restraints) Performing minimization step: 405. Total energy = 1799.7205 kcal/mol (1793.4420 without restraints) Performing minimization step: 406. Total energy = 1798.3305 kcal/mol (1792.0538 without restraints) Performing minimization step: 407. Total energy = 1796.9457 kcal/mol (1790.6709 without restraints) Performing minimization step: 408. Total energy = 1795.5653 kcal/mol (1789.2922 without restraints) Performing minimization step: 409. Total energy = 1794.1906 kcal/mol (1787.9194 without restraints) Performing minimization step: 410. Total energy = 1792.8209 kcal/mol (1786.5514 without restraints) Performing minimization step: 411. Total energy = 1791.4564 kcal/mol (1785.1888 without restraints) Performing minimization step: 412. Total energy = 1790.0967 kcal/mol (1783.8308 without restraints) Performing minimization step: 413. Total energy = 1788.7419 kcal/mol (1782.4779 without restraints) Performing minimization step: 414. Total energy = 1787.3921 kcal/mol (1781.1299 without restraints) Performing minimization step: 415. Total energy = 1786.0472 kcal/mol (1779.7868 without restraints) Performing minimization step: 416. Total energy = 1784.7071 kcal/mol (1778.4485 without restraints) Performing minimization step: 417. Total energy = 1783.3722 kcal/mol (1777.1154 without restraints) Performing minimization step: 418. Total energy = 1782.0418 kcal/mol (1775.7868 without restraints) Performing minimization step: 419. Total energy = 1780.7165 kcal/mol (1774.4633 without restraints) Performing minimization step: 420. Total energy = 1779.3960 kcal/mol (1773.1446 without restraints) Performing minimization step: 421. Total energy = 1778.0804 kcal/mol (1771.8308 without restraints) Performing minimization step: 422. Total energy = 1776.7694 kcal/mol (1770.5217 without restraints) Performing minimization step: 423. Total energy = 1775.4633 kcal/mol (1769.2174 without restraints) Performing minimization step: 424. Total energy = 1774.1620 kcal/mol (1767.9179 without restraints) Performing minimization step: 425. Total energy = 1772.8654 kcal/mol (1766.6232 without restraints) Performing minimization step: 426. Total energy = 1771.5736 kcal/mol (1765.3332 without restraints) Performing minimization step: 427. Total energy = 1770.2864 kcal/mol (1764.0478 without restraints) Performing minimization step: 428. Total energy = 1769.0040 kcal/mol (1762.7673 without restraints) Performing minimization step: 429. Total energy = 1767.7263 kcal/mol (1761.4913 without restraints) Performing minimization step: 430. Total energy = 1766.4532 kcal/mol (1760.2199 without restraints) Performing minimization step: 431. Total energy = 1765.1842 kcal/mol (1758.9529 without restraints) Performing minimization step: 432. Total energy = 1763.9204 kcal/mol (1757.6910 without restraints) Performing minimization step: 433. Total energy = 1762.6614 kcal/mol (1756.4339 without restraints) Performing minimization step: 434. Total energy = 1761.4069 kcal/mol (1755.1812 without restraints) Performing minimization step: 435. Total energy = 1760.1570 kcal/mol (1753.9331 without restraints) Performing minimization step: 436. Total energy = 1758.9115 kcal/mol (1752.6894 without restraints) Performing minimization step: 437. Total energy = 1757.6706 kcal/mol (1751.4504 without restraints) Performing minimization step: 438. Total energy = 1756.4349 kcal/mol (1750.2166 without restraints) Performing minimization step: 439. Total energy = 1755.2034 kcal/mol (1748.9869 without restraints) Performing minimization step: 440. Total energy = 1753.9761 kcal/mol (1747.7615 without restraints) Performing minimization step: 441. Total energy = 1752.7535 kcal/mol (1746.5406 without restraints) Performing minimization step: 442. Total energy = 1751.5352 kcal/mol (1745.3243 without restraints) Performing minimization step: 443. Total energy = 1750.3214 kcal/mol (1744.1123 without restraints) Performing minimization step: 444. Total energy = 1749.1120 kcal/mol (1742.9047 without restraints) Performing minimization step: 445. Total energy = 1747.9072 kcal/mol (1741.7019 without restraints) Performing minimization step: 446. Total energy = 1746.7068 kcal/mol (1740.5032 without restraints) Performing minimization step: 447. Total energy = 1745.5107 kcal/mol (1739.3090 without restraints) Performing minimization step: 448. Total energy = 1744.3190 kcal/mol (1738.1192 without restraints) Performing minimization step: 449. Total energy = 1743.1315 kcal/mol (1736.9334 without restraints) Performing minimization step: 450. Total energy = 1741.9484 kcal/mol (1735.7523 without restraints) Performing minimization step: 451. Total energy = 1740.7698 kcal/mol (1734.5756 without restraints) Performing minimization step: 452. Total energy = 1739.5955 kcal/mol (1733.4031 without restraints) Performing minimization step: 453. Total energy = 1738.4254 kcal/mol (1732.2348 without restraints) Performing minimization step: 454. Total energy = 1737.2596 kcal/mol (1731.0710 without restraints) Performing minimization step: 455. Total energy = 1736.0984 kcal/mol (1729.9116 without restraints) Performing minimization step: 456. Total energy = 1734.9414 kcal/mol (1728.7565 without restraints) Performing minimization step: 457. Total energy = 1733.7885 kcal/mol (1727.6055 without restraints) Performing minimization step: 458. Total energy = 1732.6398 kcal/mol (1726.4587 without restraints) Performing minimization step: 459. Total energy = 1731.4955 kcal/mol (1725.3163 without restraints) Performing minimization step: 460. Total energy = 1730.3550 kcal/mol (1724.1777 without restraints) Performing minimization step: 461. Total energy = 1729.2187 kcal/mol (1723.0433 without restraints) Performing minimization step: 462. Total energy = 1728.0870 kcal/mol (1721.9135 without restraints) Performing minimization step: 463. Total energy = 1726.9596 kcal/mol (1720.7880 without restraints) Performing minimization step: 464. Total energy = 1725.8358 kcal/mol (1719.6659 without restraints) Performing minimization step: 465. Total energy = 1724.7162 kcal/mol (1718.5484 without restraints) Performing minimization step: 466. Total energy = 1723.6008 kcal/mol (1717.4348 without restraints) Performing minimization step: 467. Total energy = 1722.4898 kcal/mol (1716.3257 without restraints) Performing minimization step: 468. Total energy = 1721.3827 kcal/mol (1715.2205 without restraints) Performing minimization step: 469. Total energy = 1720.2798 kcal/mol (1714.1197 without restraints) Performing minimization step: 470. Total energy = 1719.1810 kcal/mol (1713.0226 without restraints) Performing minimization step: 471. Total energy = 1718.0859 kcal/mol (1711.9293 without restraints) Performing minimization step: 472. Total energy = 1716.9949 kcal/mol (1710.8404 without restraints) Performing minimization step: 473. Total energy = 1715.9081 kcal/mol (1709.7555 without restraints) Performing minimization step: 474. Total energy = 1714.8253 kcal/mol (1708.6746 without restraints) Performing minimization step: 475. Total energy = 1713.7466 kcal/mol (1707.5978 without restraints) Performing minimization step: 476. Total energy = 1712.6718 kcal/mol (1706.5249 without restraints) Performing minimization step: 477. Total energy = 1711.6010 kcal/mol (1705.4562 without restraints) Performing minimization step: 478. Total energy = 1710.5336 kcal/mol (1704.3906 without restraints) Performing minimization step: 479. Total energy = 1709.4707 kcal/mol (1703.3296 without restraints) Performing minimization step: 480. Total energy = 1708.4117 kcal/mol (1702.2725 without restraints) Performing minimization step: 481. Total energy = 1707.3570 kcal/mol (1701.2197 without restraints) Performing minimization step: 482. Total energy = 1706.3058 kcal/mol (1700.1705 without restraints) Performing minimization step: 483. Total energy = 1705.2587 kcal/mol (1699.1253 without restraints) Performing minimization step: 484. Total energy = 1704.2152 kcal/mol (1698.0837 without restraints) Performing minimization step: 485. Total energy = 1703.1754 kcal/mol (1697.0459 without restraints) Performing minimization step: 486. Total energy = 1702.1395 kcal/mol (1696.0120 without restraints) Performing minimization step: 487. Total energy = 1701.1078 kcal/mol (1694.9822 without restraints) Performing minimization step: 488. Total energy = 1700.0798 kcal/mol (1693.9561 without restraints) Performing minimization step: 489. Total energy = 1699.0552 kcal/mol (1692.9334 without restraints) Performing minimization step: 490. Total energy = 1698.0354 kcal/mol (1691.9156 without restraints) Performing minimization step: 491. Total energy = 1697.0186 kcal/mol (1690.9008 without restraints) Performing minimization step: 492. Total energy = 1696.0060 kcal/mol (1689.8901 without restraints) Performing minimization step: 493. Total energy = 1694.9969 kcal/mol (1688.8830 without restraints) Performing minimization step: 494. Total energy = 1693.9910 kcal/mol (1687.8790 without restraints) Performing minimization step: 495. Total energy = 1692.9893 kcal/mol (1686.8793 without restraints) Performing minimization step: 496. Total energy = 1691.9912 kcal/mol (1685.8831 without restraints) Performing minimization step: 497. Total energy = 1690.9966 kcal/mol (1684.8905 without restraints) Performing minimization step: 498. Total energy = 1690.0060 kcal/mol (1683.9019 without restraints) Performing minimization step: 499. Total energy = 1689.0193 kcal/mol (1682.9171 without restraints) Performing minimization step: 500. Total energy = 1688.0360 kcal/mol (1681.9358 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 501. Total energy = 1687.0563 kcal/mol (1680.9581 without restraints) Performing minimization step: 502. Total energy = 1686.0803 kcal/mol (1679.9841 without restraints) Performing minimization step: 503. Total energy = 1685.1080 kcal/mol (1679.0137 without restraints) Performing minimization step: 504. Total energy = 1684.1392 kcal/mol (1678.0470 without restraints) Performing minimization step: 505. Total energy = 1683.1740 kcal/mol (1677.0837 without restraints) Performing minimization step: 506. Total energy = 1682.2124 kcal/mol (1676.1241 without restraints) Performing minimization step: 507. Total energy = 1681.2544 kcal/mol (1675.1681 without restraints) Performing minimization step: 508. Total energy = 1680.3003 kcal/mol (1674.2161 without restraints) Performing minimization step: 509. Total energy = 1679.3496 kcal/mol (1673.2674 without restraints) Performing minimization step: 510. Total energy = 1678.4020 kcal/mol (1672.3216 without restraints) Performing minimization step: 511. Total energy = 1677.4581 kcal/mol (1671.3798 without restraints) Performing minimization step: 512. Total energy = 1676.5178 kcal/mol (1670.4414 without restraints) Performing minimization step: 513. Total energy = 1675.5811 kcal/mol (1669.5068 without restraints) Performing minimization step: 514. Total energy = 1674.6478 kcal/mol (1668.5755 without restraints) Performing minimization step: 515. Total energy = 1673.7177 kcal/mol (1667.6474 without restraints) Performing minimization step: 516. Total energy = 1672.7912 kcal/mol (1666.7229 without restraints) Performing minimization step: 517. Total energy = 1671.8685 kcal/mol (1665.8022 without restraints) Performing minimization step: 518. Total energy = 1670.9488 kcal/mol (1664.8845 without restraints) Performing minimization step: 519. Total energy = 1670.0326 kcal/mol (1663.9703 without restraints) Performing minimization step: 520. Total energy = 1669.1199 kcal/mol (1663.0597 without restraints) Performing minimization step: 521. Total energy = 1668.2106 kcal/mol (1662.1524 without restraints) Performing minimization step: 522. Total energy = 1667.3047 kcal/mol (1661.2485 without restraints) Performing minimization step: 523. Total energy = 1666.4021 kcal/mol (1660.3480 without restraints) Performing minimization step: 524. Total energy = 1665.5029 kcal/mol (1659.4508 without restraints) Performing minimization step: 525. Total energy = 1664.6070 kcal/mol (1658.5569 without restraints) Performing minimization step: 526. Total energy = 1663.7146 kcal/mol (1657.6668 without restraints) Performing minimization step: 527. Total energy = 1662.8256 kcal/mol (1656.7796 without restraints) Performing minimization step: 528. Total energy = 1661.9398 kcal/mol (1655.8960 without restraints) Performing minimization step: 529. Total energy = 1661.0574 kcal/mol (1655.0155 without restraints) Performing minimization step: 530. Total energy = 1660.1781 kcal/mol (1654.1382 without restraints) Performing minimization step: 531. Total energy = 1659.3019 kcal/mol (1653.2641 without restraints) Performing minimization step: 532. Total energy = 1658.4289 kcal/mol (1652.3932 without restraints) Performing minimization step: 533. Total energy = 1657.5595 kcal/mol (1651.5258 without restraints) Performing minimization step: 534. Total energy = 1656.6932 kcal/mol (1650.6615 without restraints) Performing minimization step: 535. Total energy = 1655.8301 kcal/mol (1649.8006 without restraints) Performing minimization step: 536. Total energy = 1654.9703 kcal/mol (1648.9428 without restraints) Performing minimization step: 537. Total energy = 1654.1135 kcal/mol (1648.0881 without restraints) Performing minimization step: 538. Total energy = 1653.2600 kcal/mol (1647.2366 without restraints) Performing minimization step: 539. Total energy = 1652.4097 kcal/mol (1646.3884 without restraints) Performing minimization step: 540. Total energy = 1651.5629 kcal/mol (1645.5436 without restraints) Performing minimization step: 541. Total energy = 1650.7189 kcal/mol (1644.7018 without restraints) Performing minimization step: 542. Total energy = 1649.8777 kcal/mol (1643.8627 without restraints) Performing minimization step: 543. Total energy = 1649.0401 kcal/mol (1643.0271 without restraints) Performing minimization step: 544. Total energy = 1648.2055 kcal/mol (1642.1946 without restraints) Performing minimization step: 545. Total energy = 1647.3742 kcal/mol (1641.3654 without restraints) Performing minimization step: 546. Total energy = 1646.5456 kcal/mol (1640.5390 without restraints) Performing minimization step: 547. Total energy = 1645.7204 kcal/mol (1639.7158 without restraints) Performing minimization step: 548. Total energy = 1644.8982 kcal/mol (1638.8957 without restraints) Performing minimization step: 549. Total energy = 1644.0789 kcal/mol (1638.0785 without restraints) Performing minimization step: 550. Total energy = 1643.2629 kcal/mol (1637.2646 without restraints) Performing minimization step: 551. Total energy = 1642.4498 kcal/mol (1636.4536 without restraints) Performing minimization step: 552. Total energy = 1641.6397 kcal/mol (1635.6455 without restraints) Performing minimization step: 553. Total energy = 1640.8329 kcal/mol (1634.8409 without restraints) Performing minimization step: 554. Total energy = 1640.0290 kcal/mol (1634.0391 without restraints) Performing minimization step: 555. Total energy = 1639.2280 kcal/mol (1633.2403 without restraints) Performing minimization step: 556. Total energy = 1638.4301 kcal/mol (1632.4445 without restraints) Performing minimization step: 557. Total energy = 1637.6351 kcal/mol (1631.6516 without restraints) Performing minimization step: 558. Total energy = 1636.8430 kcal/mol (1630.8617 without restraints) Performing minimization step: 559. Total energy = 1636.0539 kcal/mol (1630.0747 without restraints) Performing minimization step: 560. Total energy = 1635.2676 kcal/mol (1629.2905 without restraints) Performing minimization step: 561. Total energy = 1634.4844 kcal/mol (1628.5094 without restraints) Performing minimization step: 562. Total energy = 1633.7039 kcal/mol (1627.7310 without restraints) Performing minimization step: 563. Total energy = 1632.9270 kcal/mol (1626.9563 without restraints) Performing minimization step: 564. Total energy = 1632.1524 kcal/mol (1626.1839 without restraints) Performing minimization step: 565. Total energy = 1631.3805 kcal/mol (1625.4141 without restraints) Performing minimization step: 566. Total energy = 1630.6117 kcal/mol (1624.6474 without restraints) Performing minimization step: 567. Total energy = 1629.8458 kcal/mol (1623.8837 without restraints) Performing minimization step: 568. Total energy = 1629.0821 kcal/mol (1623.1221 without restraints) Performing minimization step: 569. Total energy = 1628.3220 kcal/mol (1622.3642 without restraints) Performing minimization step: 570. Total energy = 1627.5646 kcal/mol (1621.6089 without restraints) Performing minimization step: 571. Total energy = 1626.8100 kcal/mol (1620.8565 without restraints) Performing minimization step: 572. Total energy = 1626.0579 kcal/mol (1620.1066 without restraints) Performing minimization step: 573. Total energy = 1625.3089 kcal/mol (1619.3598 without restraints) Performing minimization step: 574. Total energy = 1624.5627 kcal/mol (1618.6157 without restraints) Performing minimization step: 575. Total energy = 1623.8193 kcal/mol (1617.8745 without restraints) Performing minimization step: 576. Total energy = 1623.0786 kcal/mol (1617.1359 without restraints) Performing minimization step: 577. Total energy = 1622.3407 kcal/mol (1616.4004 without restraints) Performing minimization step: 578. Total energy = 1621.6054 kcal/mol (1615.6671 without restraints) Performing minimization step: 579. Total energy = 1620.8729 kcal/mol (1614.9368 without restraints) Performing minimization step: 580. Total energy = 1620.1432 kcal/mol (1614.2093 without restraints) Performing minimization step: 581. Total energy = 1619.4161 kcal/mol (1613.4844 without restraints) Performing minimization step: 582. Total energy = 1618.6917 kcal/mol (1612.7620 without restraints) Performing minimization step: 583. Total energy = 1617.9700 kcal/mol (1612.0428 without restraints) Performing minimization step: 584. Total energy = 1617.2510 kcal/mol (1611.3258 without restraints) Performing minimization step: 585. Total energy = 1616.5346 kcal/mol (1610.6116 without restraints) Performing minimization step: 586. Total energy = 1615.8209 kcal/mol (1609.9001 without restraints) Performing minimization step: 587. Total energy = 1615.1096 kcal/mol (1609.1910 without restraints) Performing minimization step: 588. Total energy = 1614.4010 kcal/mol (1608.4844 without restraints) Performing minimization step: 589. Total energy = 1613.6950 kcal/mol (1607.7809 without restraints) Performing minimization step: 590. Total energy = 1612.9916 kcal/mol (1607.0796 without restraints) Performing minimization step: 591. Total energy = 1612.2910 kcal/mol (1606.3813 without restraints) Performing minimization step: 592. Total energy = 1611.5930 kcal/mol (1605.6855 without restraints) Performing minimization step: 593. Total energy = 1610.8976 kcal/mol (1604.9923 without restraints) Performing minimization step: 594. Total energy = 1610.2048 kcal/mol (1604.3017 without restraints) Performing minimization step: 595. Total energy = 1609.5145 kcal/mol (1603.6137 without restraints) Performing minimization step: 596. Total energy = 1608.8268 kcal/mol (1602.9282 without restraints) Performing minimization step: 597. Total energy = 1608.1414 kcal/mol (1602.2450 without restraints) Performing minimization step: 598. Total energy = 1607.4583 kcal/mol (1601.5642 without restraints) Performing minimization step: 599. Total energy = 1606.7781 kcal/mol (1600.8862 without restraints) Performing minimization step: 600. Total energy = 1606.1004 kcal/mol (1600.2108 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 601. Total energy = 1605.4250 kcal/mol (1599.5377 without restraints) Performing minimization step: 602. Total energy = 1604.7524 kcal/mol (1598.8673 without restraints) Performing minimization step: 603. Total energy = 1604.0826 kcal/mol (1598.1999 without restraints) Performing minimization step: 604. Total energy = 1603.4148 kcal/mol (1597.5342 without restraints) Performing minimization step: 605. Total energy = 1602.7495 kcal/mol (1596.8711 without restraints) Performing minimization step: 606. Total energy = 1602.0871 kcal/mol (1596.2112 without restraints) Performing minimization step: 607. Total energy = 1601.4271 kcal/mol (1595.5533 without restraints) Performing minimization step: 608. Total energy = 1600.7690 kcal/mol (1594.8976 without restraints) Performing minimization step: 609. Total energy = 1600.1136 kcal/mol (1594.2443 without restraints) Performing minimization step: 610. Total energy = 1599.4604 kcal/mol (1593.5934 without restraints) Performing minimization step: 611. Total energy = 1598.8097 kcal/mol (1592.9450 without restraints) Performing minimization step: 612. Total energy = 1598.1614 kcal/mol (1592.2989 without restraints) Performing minimization step: 613. Total energy = 1597.5155 kcal/mol (1591.6553 without restraints) Performing minimization step: 614. Total energy = 1596.8717 kcal/mol (1591.0138 without restraints) Performing minimization step: 615. Total energy = 1596.2306 kcal/mol (1590.3750 without restraints) Performing minimization step: 616. Total energy = 1595.5919 kcal/mol (1589.7386 without restraints) Performing minimization step: 617. Total energy = 1594.9553 kcal/mol (1589.1043 without restraints) Performing minimization step: 618. Total energy = 1594.3213 kcal/mol (1588.4726 without restraints) Performing minimization step: 619. Total energy = 1593.6896 kcal/mol (1587.8433 without restraints) Performing minimization step: 620. Total energy = 1593.0603 kcal/mol (1587.2162 without restraints) Performing minimization step: 621. Total energy = 1592.4331 kcal/mol (1586.5913 without restraints) Performing minimization step: 622. Total energy = 1591.8082 kcal/mol (1585.9687 without restraints) Performing minimization step: 623. Total energy = 1591.1855 kcal/mol (1585.3483 without restraints) Performing minimization step: 624. Total energy = 1590.5650 kcal/mol (1584.7301 without restraints) Performing minimization step: 625. Total energy = 1589.9465 kcal/mol (1584.1136 without restraints) Performing minimization step: 626. Total energy = 1589.3304 kcal/mol (1583.5001 without restraints) Performing minimization step: 627. Total energy = 1588.7167 kcal/mol (1582.8887 without restraints) Performing minimization step: 628. Total energy = 1588.1051 kcal/mol (1582.2794 without restraints) Performing minimization step: 629. Total energy = 1587.4957 kcal/mol (1581.6723 without restraints) Performing minimization step: 630. Total energy = 1586.8887 kcal/mol (1581.0677 without restraints) Performing minimization step: 631. Total energy = 1586.2839 kcal/mol (1580.4652 without restraints) Performing minimization step: 632. Total energy = 1585.6809 kcal/mol (1579.8645 without restraints) Performing minimization step: 633. Total energy = 1585.0803 kcal/mol (1579.2663 without restraints) Performing minimization step: 634. Total energy = 1584.4819 kcal/mol (1578.6702 without restraints) Performing minimization step: 635. Total energy = 1583.8855 kcal/mol (1578.0761 without restraints) Performing minimization step: 636. Total energy = 1583.2913 kcal/mol (1577.4842 without restraints) Performing minimization step: 637. Total energy = 1582.6992 kcal/mol (1576.8946 without restraints) Performing minimization step: 638. Total energy = 1582.1093 kcal/mol (1576.3069 without restraints) Performing minimization step: 639. Total energy = 1581.5217 kcal/mol (1575.7218 without restraints) Performing minimization step: 640. Total energy = 1580.9359 kcal/mol (1575.1383 without restraints) Performing minimization step: 641. Total energy = 1580.3524 kcal/mol (1574.5572 without restraints) Performing minimization step: 642. Total energy = 1579.7711 kcal/mol (1573.9782 without restraints) Performing minimization step: 643. Total energy = 1579.1920 kcal/mol (1573.4015 without restraints) Performing minimization step: 644. Total energy = 1578.6147 kcal/mol (1572.8266 without restraints) Performing minimization step: 645. Total energy = 1578.0395 kcal/mol (1572.2536 without restraints) Performing minimization step: 646. Total energy = 1577.4666 kcal/mol (1571.6832 without restraints) Performing minimization step: 647. Total energy = 1576.8955 kcal/mol (1571.1145 without restraints) Performing minimization step: 648. Total energy = 1576.3267 kcal/mol (1570.5481 without restraints) Performing minimization step: 649. Total energy = 1575.7595 kcal/mol (1569.9832 without restraints) Performing minimization step: 650. Total energy = 1575.1944 kcal/mol (1569.4204 without restraints) Performing minimization step: 651. Total energy = 1574.6310 kcal/mol (1568.8593 without restraints) Performing minimization step: 652. Total energy = 1574.0698 kcal/mol (1568.3006 without restraints) Performing minimization step: 653. Total energy = 1573.5108 kcal/mol (1567.7440 without restraints) Performing minimization step: 654. Total energy = 1572.9538 kcal/mol (1567.1894 without restraints) Performing minimization step: 655. Total energy = 1572.3990 kcal/mol (1566.6370 without restraints) Performing minimization step: 656. Total energy = 1571.8455 kcal/mol (1566.0860 without restraints) Performing minimization step: 657. Total energy = 1571.2947 kcal/mol (1565.5375 without restraints) Performing minimization step: 658. Total energy = 1570.7453 kcal/mol (1564.9905 without restraints) Performing minimization step: 659. Total energy = 1570.1977 kcal/mol (1564.4453 without restraints) Performing minimization step: 660. Total energy = 1569.6525 kcal/mol (1563.9025 without restraints) Performing minimization step: 661. Total energy = 1569.1090 kcal/mol (1563.3615 without restraints) Performing minimization step: 662. Total energy = 1568.5681 kcal/mol (1562.8229 without restraints) Performing minimization step: 663. Total energy = 1568.0288 kcal/mol (1562.2860 without restraints) Performing minimization step: 664. Total energy = 1567.4912 kcal/mol (1561.7508 without restraints) Performing minimization step: 665. Total energy = 1566.9554 kcal/mol (1561.2174 without restraints) Performing minimization step: 666. Total energy = 1566.4215 kcal/mol (1560.6860 without restraints) Performing minimization step: 667. Total energy = 1565.8896 kcal/mol (1560.1567 without restraints) Performing minimization step: 668. Total energy = 1565.3597 kcal/mol (1559.6291 without restraints) Performing minimization step: 669. Total energy = 1564.8316 kcal/mol (1559.1034 without restraints) Performing minimization step: 670. Total energy = 1564.3052 kcal/mol (1558.5795 without restraints) Performing minimization step: 671. Total energy = 1563.7807 kcal/mol (1558.0573 without restraints) Performing minimization step: 672. Total energy = 1563.2578 kcal/mol (1557.5367 without restraints) Performing minimization step: 673. Total energy = 1562.7368 kcal/mol (1557.0185 without restraints) Performing minimization step: 674. Total energy = 1562.2175 kcal/mol (1556.5015 without restraints) Performing minimization step: 675. Total energy = 1561.7003 kcal/mol (1555.9868 without restraints) Performing minimization step: 676. Total energy = 1561.1849 kcal/mol (1555.4737 without restraints) Performing minimization step: 677. Total energy = 1560.6713 kcal/mol (1554.9627 without restraints) Performing minimization step: 678. Total energy = 1560.1591 kcal/mol (1554.4529 without restraints) Performing minimization step: 679. Total energy = 1559.6489 kcal/mol (1553.9451 without restraints) Performing minimization step: 680. Total energy = 1559.1404 kcal/mol (1553.4391 without restraints) Performing minimization step: 681. Total energy = 1558.6338 kcal/mol (1552.9349 without restraints) Performing minimization step: 682. Total energy = 1558.1291 kcal/mol (1552.4327 without restraints) Performing minimization step: 683. Total energy = 1557.6263 kcal/mol (1551.9324 without restraints) Performing minimization step: 684. Total energy = 1557.1251 kcal/mol (1551.4336 without restraints) Performing minimization step: 685. Total energy = 1556.6255 kcal/mol (1550.9365 without restraints) Performing minimization step: 686. Total energy = 1556.1272 kcal/mol (1550.4406 without restraints) Performing minimization step: 687. Total energy = 1555.6302 kcal/mol (1549.9461 without restraints) Performing minimization step: 688. Total energy = 1555.1356 kcal/mol (1549.4541 without restraints) Performing minimization step: 689. Total energy = 1554.6421 kcal/mol (1548.9631 without restraints) Performing minimization step: 690. Total energy = 1554.1510 kcal/mol (1548.4743 without restraints) Performing minimization step: 691. Total energy = 1553.6611 kcal/mol (1547.9869 without restraints) Performing minimization step: 692. Total energy = 1553.1734 kcal/mol (1547.5016 without restraints) Performing minimization step: 693. Total energy = 1552.6874 kcal/mol (1547.0183 without restraints) Performing minimization step: 694. Total energy = 1552.2029 kcal/mol (1546.5362 without restraints) Performing minimization step: 695. Total energy = 1551.7197 kcal/mol (1546.0555 without restraints) Performing minimization step: 696. Total energy = 1551.2383 kcal/mol (1545.5766 without restraints) Performing minimization step: 697. Total energy = 1550.7587 kcal/mol (1545.0994 without restraints) Performing minimization step: 698. Total energy = 1550.2804 kcal/mol (1544.6235 without restraints) Performing minimization step: 699. Total energy = 1549.8036 kcal/mol (1544.1493 without restraints) Performing minimization step: 700. Total energy = 1549.3286 kcal/mol (1543.6768 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 701. Total energy = 1548.8552 kcal/mol (1543.2058 without restraints) Performing minimization step: 702. Total energy = 1548.3830 kcal/mol (1542.7362 without restraints) Performing minimization step: 703. Total energy = 1547.9128 kcal/mol (1542.2685 without restraints) Performing minimization step: 704. Total energy = 1547.4441 kcal/mol (1541.8024 without restraints) Performing minimization step: 705. Total energy = 1546.9769 kcal/mol (1541.3376 without restraints) Performing minimization step: 706. Total energy = 1546.5114 kcal/mol (1540.8746 without restraints) Performing minimization step: 707. Total energy = 1546.0477 kcal/mol (1540.4134 without restraints) Performing minimization step: 708. Total energy = 1545.5850 kcal/mol (1539.9532 without restraints) Performing minimization step: 709. Total energy = 1545.1243 kcal/mol (1539.4950 without restraints) Performing minimization step: 710. Total energy = 1544.6648 kcal/mol (1539.0380 without restraints) Performing minimization step: 711. Total energy = 1544.2071 kcal/mol (1538.5829 without restraints) Performing minimization step: 712. Total energy = 1543.7507 kcal/mol (1538.1291 without restraints) Performing minimization step: 713. Total energy = 1543.2957 kcal/mol (1537.6766 without restraints) Performing minimization step: 714. Total energy = 1542.8423 kcal/mol (1537.2255 without restraints) Performing minimization step: 715. Total energy = 1542.3903 kcal/mol (1536.7762 without restraints) Performing minimization step: 716. Total energy = 1541.9397 kcal/mol (1536.3281 without restraints) Performing minimization step: 717. Total energy = 1541.4908 kcal/mol (1535.8818 without restraints) Performing minimization step: 718. Total energy = 1541.0431 kcal/mol (1535.4366 without restraints) Performing minimization step: 719. Total energy = 1540.5975 kcal/mol (1534.9935 without restraints) Performing minimization step: 720. Total energy = 1540.1529 kcal/mol (1534.5515 without restraints) Performing minimization step: 721. Total energy = 1539.7098 kcal/mol (1534.1109 without restraints) Performing minimization step: 722. Total energy = 1539.2678 kcal/mol (1533.6715 without restraints) Performing minimization step: 723. Total energy = 1538.8274 kcal/mol (1533.2336 without restraints) Performing minimization step: 724. Total energy = 1538.3885 kcal/mol (1532.7972 without restraints) Performing minimization step: 725. Total energy = 1537.9510 kcal/mol (1532.3623 without restraints) Performing minimization step: 726. Total energy = 1537.5151 kcal/mol (1531.9289 without restraints) Performing minimization step: 727. Total energy = 1537.0804 kcal/mol (1531.4968 without restraints) Performing minimization step: 728. Total energy = 1536.6470 kcal/mol (1531.0659 without restraints) Performing minimization step: 729. Total energy = 1536.2147 kcal/mol (1530.6362 without restraints) Performing minimization step: 730. Total energy = 1535.7844 kcal/mol (1530.2085 without restraints) Performing minimization step: 731. Total energy = 1535.3553 kcal/mol (1529.7819 without restraints) Performing minimization step: 732. Total energy = 1534.9273 kcal/mol (1529.3564 without restraints) Performing minimization step: 733. Total energy = 1534.5009 kcal/mol (1528.9326 without restraints) Performing minimization step: 734. Total energy = 1534.0758 kcal/mol (1528.5099 without restraints) Performing minimization step: 735. Total energy = 1533.6520 kcal/mol (1528.0888 without restraints) Performing minimization step: 736. Total energy = 1533.2297 kcal/mol (1527.6690 without restraints) Performing minimization step: 737. Total energy = 1532.8088 kcal/mol (1527.2508 without restraints) Performing minimization step: 738. Total energy = 1532.3892 kcal/mol (1526.8336 without restraints) Performing minimization step: 739. Total energy = 1531.9706 kcal/mol (1526.4177 without restraints) Performing minimization step: 740. Total energy = 1531.5531 kcal/mol (1526.0028 without restraints) Performing minimization step: 741. Total energy = 1531.1369 kcal/mol (1525.5891 without restraints) Performing minimization step: 742. Total energy = 1530.7224 kcal/mol (1525.1772 without restraints) Performing minimization step: 743. Total energy = 1530.3094 kcal/mol (1524.7667 without restraints) Performing minimization step: 744. Total energy = 1529.8977 kcal/mol (1524.3575 without restraints) Performing minimization step: 745. Total energy = 1529.4868 kcal/mol (1523.9492 without restraints) Performing minimization step: 746. Total energy = 1529.0774 kcal/mol (1523.5425 without restraints) Performing minimization step: 747. Total energy = 1528.6693 kcal/mol (1523.1370 without restraints) Performing minimization step: 748. Total energy = 1528.2625 kcal/mol (1522.7327 without restraints) Performing minimization step: 749. Total energy = 1527.8569 kcal/mol (1522.3297 without restraints) Performing minimization step: 750. Total energy = 1527.4524 kcal/mol (1521.9277 without restraints) Performing minimization step: 751. Total energy = 1527.0494 kcal/mol (1521.5275 without restraints) Performing minimization step: 752. Total energy = 1526.6476 kcal/mol (1521.1281 without restraints) Performing minimization step: 753. Total energy = 1526.2470 kcal/mol (1520.7301 without restraints) Performing minimization step: 754. Total energy = 1525.8476 kcal/mol (1520.3333 without restraints) Performing minimization step: 755. Total energy = 1525.4494 kcal/mol (1519.9377 without restraints) Performing minimization step: 756. Total energy = 1525.0528 kcal/mol (1519.5437 without restraints) Performing minimization step: 757. Total energy = 1524.6572 kcal/mol (1519.1506 without restraints) Performing minimization step: 758. Total energy = 1524.2625 kcal/mol (1518.7584 without restraints) Performing minimization step: 759. Total energy = 1523.8689 kcal/mol (1518.3676 without restraints) Performing minimization step: 760. Total energy = 1523.4767 kcal/mol (1517.9779 without restraints) Performing minimization step: 761. Total energy = 1523.0854 kcal/mol (1517.5893 without restraints) Performing minimization step: 762. Total energy = 1522.6956 kcal/mol (1517.2020 without restraints) Performing minimization step: 763. Total energy = 1522.3069 kcal/mol (1516.8159 without restraints) Performing minimization step: 764. Total energy = 1521.9194 kcal/mol (1516.4310 without restraints) Performing minimization step: 765. Total energy = 1521.5330 kcal/mol (1516.0472 without restraints) Performing minimization step: 766. Total energy = 1521.1478 kcal/mol (1515.6646 without restraints) Performing minimization step: 767. Total energy = 1520.7639 kcal/mol (1515.2835 without restraints) Performing minimization step: 768. Total energy = 1520.3811 kcal/mol (1514.9031 without restraints) Performing minimization step: 769. Total energy = 1519.9994 kcal/mol (1514.5240 without restraints) Performing minimization step: 770. Total energy = 1519.6187 kcal/mol (1514.1459 without restraints) Performing minimization step: 771. Total energy = 1519.2393 kcal/mol (1513.7691 without restraints) Performing minimization step: 772. Total energy = 1518.8609 kcal/mol (1513.3934 without restraints) Performing minimization step: 773. Total energy = 1518.4840 kcal/mol (1513.0190 without restraints) Performing minimization step: 774. Total energy = 1518.1078 kcal/mol (1512.6454 without restraints) Performing minimization step: 775. Total energy = 1517.7322 kcal/mol (1512.2725 without restraints) Performing minimization step: 776. Total energy = 1517.3581 kcal/mol (1511.9009 without restraints) Performing minimization step: 777. Total energy = 1516.9850 kcal/mol (1511.5305 without restraints) Performing minimization step: 778. Total energy = 1516.6131 kcal/mol (1511.1612 without restraints) Performing minimization step: 779. Total energy = 1516.2423 kcal/mol (1510.7929 without restraints) Performing minimization step: 780. Total energy = 1515.8726 kcal/mol (1510.4258 without restraints) Performing minimization step: 781. Total energy = 1515.5035 kcal/mol (1510.0594 without restraints) Performing minimization step: 782. Total energy = 1515.1359 kcal/mol (1509.6944 without restraints) Performing minimization step: 783. Total energy = 1514.7693 kcal/mol (1509.3304 without restraints) Performing minimization step: 784. Total energy = 1514.4035 kcal/mol (1508.9673 without restraints) Performing minimization step: 785. Total energy = 1514.0391 kcal/mol (1508.6054 without restraints) Performing minimization step: 786. Total energy = 1513.6756 kcal/mol (1508.2446 without restraints) Performing minimization step: 787. Total energy = 1513.3132 kcal/mol (1507.8848 without restraints) Performing minimization step: 788. Total energy = 1512.9515 kcal/mol (1507.5257 without restraints) Performing minimization step: 789. Total energy = 1512.5913 kcal/mol (1507.1681 without restraints) Performing minimization step: 790. Total energy = 1512.2319 kcal/mol (1506.8114 without restraints) Performing minimization step: 791. Total energy = 1511.8736 kcal/mol (1506.4556 without restraints) Performing minimization step: 792. Total energy = 1511.5165 kcal/mol (1506.1012 without restraints) Performing minimization step: 793. Total energy = 1511.1601 kcal/mol (1505.7474 without restraints) Performing minimization step: 794. Total energy = 1510.8048 kcal/mol (1505.3947 without restraints) Performing minimization step: 795. Total energy = 1510.4505 kcal/mol (1505.0430 without restraints) Performing minimization step: 796. Total energy = 1510.0971 kcal/mol (1504.6923 without restraints) Performing minimization step: 797. Total energy = 1509.7446 kcal/mol (1504.3424 without restraints) Performing minimization step: 798. Total energy = 1509.3932 kcal/mol (1503.9936 without restraints) Performing minimization step: 799. Total energy = 1509.0426 kcal/mol (1503.6457 without restraints) Performing minimization step: 800. Total energy = 1508.6930 kcal/mol (1503.2987 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 801. Total energy = 1508.3445 kcal/mol (1502.9528 without restraints) Performing minimization step: 802. Total energy = 1507.9967 kcal/mol (1502.6076 without restraints) Performing minimization step: 803. Total energy = 1507.6502 kcal/mol (1502.2637 without restraints) Performing minimization step: 804. Total energy = 1507.3045 kcal/mol (1501.9206 without restraints) Performing minimization step: 805. Total energy = 1506.9595 kcal/mol (1501.5783 without restraints) Performing minimization step: 806. Total energy = 1506.6160 kcal/mol (1501.2375 without restraints) Performing minimization step: 807. Total energy = 1506.2739 kcal/mol (1500.8980 without restraints) Performing minimization step: 808. Total energy = 1505.9320 kcal/mol (1500.5587 without restraints) Performing minimization step: 809. Total energy = 1505.5911 kcal/mol (1500.2204 without restraints) Performing minimization step: 810. Total energy = 1505.2511 kcal/mol (1499.8831 without restraints) Performing minimization step: 811. Total energy = 1504.9120 kcal/mol (1499.5466 without restraints) Performing minimization step: 812. Total energy = 1504.5735 kcal/mol (1499.2106 without restraints) Performing minimization step: 813. Total energy = 1504.2364 kcal/mol (1498.8762 without restraints) Performing minimization step: 814. Total energy = 1503.9001 kcal/mol (1498.5425 without restraints) Performing minimization step: 815. Total energy = 1503.5648 kcal/mol (1498.2099 without restraints) Performing minimization step: 816. Total energy = 1503.2299 kcal/mol (1497.8774 without restraints) Performing minimization step: 817. Total energy = 1502.8960 kcal/mol (1497.5463 without restraints) Performing minimization step: 818. Total energy = 1502.5632 kcal/mol (1497.2162 without restraints) Performing minimization step: 819. Total energy = 1502.2313 kcal/mol (1496.8870 without restraints) Performing minimization step: 820. Total energy = 1501.9001 kcal/mol (1496.5584 without restraints) Performing minimization step: 821. Total energy = 1501.5697 kcal/mol (1496.2306 without restraints) Performing minimization step: 822. Total energy = 1501.2401 kcal/mol (1495.9037 without restraints) Performing minimization step: 823. Total energy = 1500.9118 kcal/mol (1495.5780 without restraints) Performing minimization step: 824. Total energy = 1500.5845 kcal/mol (1495.2533 without restraints) Performing minimization step: 825. Total energy = 1500.2577 kcal/mol (1494.9291 without restraints) Performing minimization step: 826. Total energy = 1499.9316 kcal/mol (1494.6058 without restraints) Performing minimization step: 827. Total energy = 1499.6068 kcal/mol (1494.2835 without restraints) Performing minimization step: 828. Total energy = 1499.2828 kcal/mol (1493.9622 without restraints) Performing minimization step: 829. Total energy = 1498.9595 kcal/mol (1493.6415 without restraints) Performing minimization step: 830. Total energy = 1498.6371 kcal/mol (1493.3218 without restraints) Performing minimization step: 831. Total energy = 1498.3156 kcal/mol (1493.0028 without restraints) Performing minimization step: 832. Total energy = 1497.9946 kcal/mol (1492.6844 without restraints) Performing minimization step: 833. Total energy = 1497.6746 kcal/mol (1492.3671 without restraints) Performing minimization step: 834. Total energy = 1497.3555 kcal/mol (1492.0506 without restraints) Performing minimization step: 835. Total energy = 1497.0373 kcal/mol (1491.7351 without restraints) Performing minimization step: 836. Total energy = 1496.7198 kcal/mol (1491.4203 without restraints) Performing minimization step: 837. Total energy = 1496.4032 kcal/mol (1491.1062 without restraints) Performing minimization step: 838. Total energy = 1496.0875 kcal/mol (1490.7931 without restraints) Performing minimization step: 839. Total energy = 1495.7720 kcal/mol (1490.4803 without restraints) Performing minimization step: 840. Total energy = 1495.4577 kcal/mol (1490.1687 without restraints) Performing minimization step: 841. Total energy = 1495.1440 kcal/mol (1489.8576 without restraints) Performing minimization step: 842. Total energy = 1494.8311 kcal/mol (1489.5473 without restraints) Performing minimization step: 843. Total energy = 1494.5194 kcal/mol (1489.2382 without restraints) Performing minimization step: 844. Total energy = 1494.2083 kcal/mol (1488.9298 without restraints) Performing minimization step: 845. Total energy = 1493.8978 kcal/mol (1488.6218 without restraints) Performing minimization step: 846. Total energy = 1493.5881 kcal/mol (1488.3149 without restraints) Performing minimization step: 847. Total energy = 1493.2793 kcal/mol (1488.0087 without restraints) Performing minimization step: 848. Total energy = 1492.9713 kcal/mol (1487.7034 without restraints) Performing minimization step: 849. Total energy = 1492.6639 kcal/mol (1487.3985 without restraints) Performing minimization step: 850. Total energy = 1492.3574 kcal/mol (1487.0948 without restraints) Performing minimization step: 851. Total energy = 1492.0518 kcal/mol (1486.7917 without restraints) Performing minimization step: 852. Total energy = 1491.7470 kcal/mol (1486.4895 without restraints) Performing minimization step: 853. Total energy = 1491.4428 kcal/mol (1486.1879 without restraints) Performing minimization step: 854. Total energy = 1491.1392 kcal/mol (1485.8870 without restraints) Performing minimization step: 855. Total energy = 1490.8365 kcal/mol (1485.5869 without restraints) Performing minimization step: 856. Total energy = 1490.5345 kcal/mol (1485.2876 without restraints) Performing minimization step: 857. Total energy = 1490.2332 kcal/mol (1484.9889 without restraints) Performing minimization step: 858. Total energy = 1489.9327 kcal/mol (1484.6911 without restraints) Performing minimization step: 859. Total energy = 1489.6329 kcal/mol (1484.3939 without restraints) Performing minimization step: 860. Total energy = 1489.3340 kcal/mol (1484.0977 without restraints) Performing minimization step: 861. Total energy = 1489.0359 kcal/mol (1483.8021 without restraints) Performing minimization step: 862. Total energy = 1488.7379 kcal/mol (1483.5068 without restraints) Performing minimization step: 863. Total energy = 1488.4410 kcal/mol (1483.2125 without restraints) Performing minimization step: 864. Total energy = 1488.1447 kcal/mol (1482.9189 without restraints) Performing minimization step: 865. Total energy = 1487.8492 kcal/mol (1482.6260 without restraints) Performing minimization step: 866. Total energy = 1487.5545 kcal/mol (1482.3340 without restraints) Performing minimization step: 867. Total energy = 1487.2606 kcal/mol (1482.0427 without restraints) Performing minimization step: 868. Total energy = 1486.9676 kcal/mol (1481.7524 without restraints) Performing minimization step: 869. Total energy = 1486.6750 kcal/mol (1481.4623 without restraints) Performing minimization step: 870. Total energy = 1486.3832 kcal/mol (1481.1731 without restraints) Performing minimization step: 871. Total energy = 1486.0917 kcal/mol (1480.8842 without restraints) Performing minimization step: 872. Total energy = 1485.8010 kcal/mol (1480.5963 without restraints) Performing minimization step: 873. Total energy = 1485.5115 kcal/mol (1480.3093 without restraints) Performing minimization step: 874. Total energy = 1485.2223 kcal/mol (1480.0227 without restraints) Performing minimization step: 875. Total energy = 1484.9339 kcal/mol (1479.7370 without restraints) Performing minimization step: 876. Total energy = 1484.6462 kcal/mol (1479.4520 without restraints) Performing minimization step: 877. Total energy = 1484.3592 kcal/mol (1479.1675 without restraints) Performing minimization step: 878. Total energy = 1484.0730 kcal/mol (1478.8839 without restraints) Performing minimization step: 879. Total energy = 1483.7870 kcal/mol (1478.6005 without restraints) Performing minimization step: 880. Total energy = 1483.5018 kcal/mol (1478.3180 without restraints) Performing minimization step: 881. Total energy = 1483.2174 kcal/mol (1478.0361 without restraints) Performing minimization step: 882. Total energy = 1482.9334 kcal/mol (1477.7548 without restraints) Performing minimization step: 883. Total energy = 1482.6502 kcal/mol (1477.4743 without restraints) Performing minimization step: 884. Total energy = 1482.3678 kcal/mol (1477.1946 without restraints) Performing minimization step: 885. Total energy = 1482.0860 kcal/mol (1476.9154 without restraints) Performing minimization step: 886. Total energy = 1481.8048 kcal/mol (1476.6368 without restraints) Performing minimization step: 887. Total energy = 1481.5242 kcal/mol (1476.3587 without restraints) Performing minimization step: 888. Total energy = 1481.2445 kcal/mol (1476.0817 without restraints) Performing minimization step: 889. Total energy = 1480.9652 kcal/mol (1475.8050 without restraints) Performing minimization step: 890. Total energy = 1480.6866 kcal/mol (1475.5291 without restraints) Performing minimization step: 891. Total energy = 1480.4089 kcal/mol (1475.2541 without restraints) Performing minimization step: 892. Total energy = 1480.1316 kcal/mol (1474.9793 without restraints) Performing minimization step: 893. Total energy = 1479.8548 kcal/mol (1474.7051 without restraints) Performing minimization step: 894. Total energy = 1479.5787 kcal/mol (1474.4316 without restraints) Performing minimization step: 895. Total energy = 1479.3034 kcal/mol (1474.1590 without restraints) Performing minimization step: 896. Total energy = 1479.0286 kcal/mol (1473.8869 without restraints) Performing minimization step: 897. Total energy = 1478.7544 kcal/mol (1473.6152 without restraints) Performing minimization step: 898. Total energy = 1478.4807 kcal/mol (1473.3441 without restraints) Performing minimization step: 899. Total energy = 1478.2076 kcal/mol (1473.0736 without restraints) Performing minimization step: 900. Total energy = 1477.9356 kcal/mol (1472.8042 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 901. Total energy = 1477.6639 kcal/mol (1472.5353 without restraints) Performing minimization step: 902. Total energy = 1477.3928 kcal/mol (1472.2667 without restraints) Performing minimization step: 903. Total energy = 1477.1223 kcal/mol (1471.9988 without restraints) Performing minimization step: 904. Total energy = 1476.8524 kcal/mol (1471.7316 without restraints) Performing minimization step: 905. Total energy = 1476.5830 kcal/mol (1471.4648 without restraints) Performing minimization step: 906. Total energy = 1476.3142 kcal/mol (1471.1985 without restraints) Performing minimization step: 907. Total energy = 1476.0462 kcal/mol (1470.9332 without restraints) Performing minimization step: 908. Total energy = 1475.7782 kcal/mol (1470.6677 without restraints) Performing minimization step: 909. Total energy = 1475.5099 kcal/mol (1470.4020 without restraints) Performing minimization step: 910. Total energy = 1475.2434 kcal/mol (1470.1381 without restraints) Performing minimization step: 911. Total energy = 1474.9778 kcal/mol (1469.8752 without restraints) Performing minimization step: 912. Total energy = 1474.7121 kcal/mol (1469.6120 without restraints) Performing minimization step: 913. Total energy = 1474.4472 kcal/mol (1469.3498 without restraints) Performing minimization step: 914. Total energy = 1474.1830 kcal/mol (1469.0882 without restraints) Performing minimization step: 915. Total energy = 1473.9195 kcal/mol (1468.8273 without restraints) Performing minimization step: 916. Total energy = 1473.6564 kcal/mol (1468.5669 without restraints) Performing minimization step: 917. Total energy = 1473.3938 kcal/mol (1468.3068 without restraints) Performing minimization step: 918. Total energy = 1473.1318 kcal/mol (1468.0475 without restraints) Performing minimization step: 919. Total energy = 1472.8705 kcal/mol (1467.7887 without restraints) Performing minimization step: 920. Total energy = 1472.6096 kcal/mol (1467.5305 without restraints) Performing minimization step: 921. Total energy = 1472.3493 kcal/mol (1467.2726 without restraints) Performing minimization step: 922. Total energy = 1472.0898 kcal/mol (1467.0158 without restraints) Performing minimization step: 923. Total energy = 1471.8307 kcal/mol (1466.7593 without restraints) Performing minimization step: 924. Total energy = 1471.5719 kcal/mol (1466.5032 without restraints) Performing minimization step: 925. Total energy = 1471.3139 kcal/mol (1466.2477 without restraints) Performing minimization step: 926. Total energy = 1471.0565 kcal/mol (1465.9930 without restraints) Performing minimization step: 927. Total energy = 1470.7996 kcal/mol (1465.7386 without restraints) Performing minimization step: 928. Total energy = 1470.5430 kcal/mol (1465.4846 without restraints) Performing minimization step: 929. Total energy = 1470.2870 kcal/mol (1465.2308 without restraints) Performing minimization step: 930. Total energy = 1470.0311 kcal/mol (1464.9780 without restraints) Performing minimization step: 931. Total energy = 1469.7766 kcal/mol (1464.7260 without restraints) Performing minimization step: 932. Total energy = 1469.5226 kcal/mol (1464.4746 without restraints) Performing minimization step: 933. Total energy = 1469.2687 kcal/mol (1464.2233 without restraints) Performing minimization step: 934. Total energy = 1469.0156 kcal/mol (1463.9728 without restraints) Performing minimization step: 935. Total energy = 1468.7630 kcal/mol (1463.7228 without restraints) Performing minimization step: 936. Total energy = 1468.5109 kcal/mol (1463.4733 without restraints) Performing minimization step: 937. Total energy = 1468.2590 kcal/mol (1463.2240 without restraints) Performing minimization step: 938. Total energy = 1468.0082 kcal/mol (1462.9757 without restraints) Performing minimization step: 939. Total energy = 1467.7576 kcal/mol (1462.7277 without restraints) Performing minimization step: 940. Total energy = 1467.5075 kcal/mol (1462.4802 without restraints) Performing minimization step: 941. Total energy = 1467.2575 kcal/mol (1462.2329 without restraints) Performing minimization step: 942. Total energy = 1467.0087 kcal/mol (1461.9865 without restraints) Performing minimization step: 943. Total energy = 1466.7601 kcal/mol (1461.7406 without restraints) Performing minimization step: 944. Total energy = 1466.5118 kcal/mol (1461.4949 without restraints) Performing minimization step: 945. Total energy = 1466.2636 kcal/mol (1461.2492 without restraints) Performing minimization step: 946. Total energy = 1466.0166 kcal/mol (1461.0048 without restraints) Performing minimization step: 947. Total energy = 1465.7696 kcal/mol (1460.7604 without restraints) Performing minimization step: 948. Total energy = 1465.5238 kcal/mol (1460.5172 without restraints) Performing minimization step: 949. Total energy = 1465.2783 kcal/mol (1460.2743 without restraints) Performing minimization step: 950. Total energy = 1465.0333 kcal/mol (1460.0319 without restraints) Performing minimization step: 951. Total energy = 1464.7888 kcal/mol (1459.7899 without restraints) Performing minimization step: 952. Total energy = 1464.5448 kcal/mol (1459.5485 without restraints) Performing minimization step: 953. Total energy = 1464.3010 kcal/mol (1459.3072 without restraints) Performing minimization step: 954. Total energy = 1464.0579 kcal/mol (1459.0667 without restraints) Performing minimization step: 955. Total energy = 1463.8150 kcal/mol (1458.8264 without restraints) Performing minimization step: 956. Total energy = 1463.5728 kcal/mol (1458.5868 without restraints) Performing minimization step: 957. Total energy = 1463.3312 kcal/mol (1458.3478 without restraints) Performing minimization step: 958. Total energy = 1463.0901 kcal/mol (1458.1092 without restraints) Performing minimization step: 959. Total energy = 1462.8494 kcal/mol (1457.8711 without restraints) Performing minimization step: 960. Total energy = 1462.6092 kcal/mol (1457.6335 without restraints) Performing minimization step: 961. Total energy = 1462.3695 kcal/mol (1457.3963 without restraints) Performing minimization step: 962. Total energy = 1462.1306 kcal/mol (1457.1601 without restraints) Performing minimization step: 963. Total energy = 1461.8918 kcal/mol (1456.9238 without restraints) Performing minimization step: 964. Total energy = 1461.6534 kcal/mol (1456.6880 without restraints) Performing minimization step: 965. Total energy = 1461.4160 kcal/mol (1456.4531 without restraints) Performing minimization step: 966. Total energy = 1461.1786 kcal/mol (1456.2183 without restraints) Performing minimization step: 967. Total energy = 1460.9414 kcal/mol (1455.9837 without restraints) Performing minimization step: 968. Total energy = 1460.7050 kcal/mol (1455.7498 without restraints) Performing minimization step: 969. Total energy = 1460.4687 kcal/mol (1455.5161 without restraints) Performing minimization step: 970. Total energy = 1460.2331 kcal/mol (1455.2829 without restraints) Performing minimization step: 971. Total energy = 1459.9978 kcal/mol (1455.0503 without restraints) Performing minimization step: 972. Total energy = 1459.7631 kcal/mol (1454.8182 without restraints) Performing minimization step: 973. Total energy = 1459.5291 kcal/mol (1454.5867 without restraints) Performing minimization step: 974. Total energy = 1459.2953 kcal/mol (1454.3555 without restraints) Performing minimization step: 975. Total energy = 1459.0620 kcal/mol (1454.1247 without restraints) Performing minimization step: 976. Total energy = 1458.8292 kcal/mol (1453.8945 without restraints) Performing minimization step: 977. Total energy = 1458.5969 kcal/mol (1453.6647 without restraints) Performing minimization step: 978. Total energy = 1458.3650 kcal/mol (1453.4353 without restraints) Performing minimization step: 979. Total energy = 1458.1333 kcal/mol (1453.2061 without restraints) Performing minimization step: 980. Total energy = 1457.9020 kcal/mol (1452.9775 without restraints) Performing minimization step: 981. Total energy = 1457.6713 kcal/mol (1452.7494 without restraints) Performing minimization step: 982. Total energy = 1457.4408 kcal/mol (1452.5214 without restraints) Performing minimization step: 983. Total energy = 1457.2112 kcal/mol (1452.2943 without restraints) Performing minimization step: 984. Total energy = 1456.9821 kcal/mol (1452.0679 without restraints) Performing minimization step: 985. Total energy = 1456.7531 kcal/mol (1451.8413 without restraints) Performing minimization step: 986. Total energy = 1456.5245 kcal/mol (1451.6153 without restraints) Performing minimization step: 987. Total energy = 1456.2964 kcal/mol (1451.3896 without restraints) Performing minimization step: 988. Total energy = 1456.0684 kcal/mol (1451.1643 without restraints) Performing minimization step: 989. Total energy = 1455.8412 kcal/mol (1450.9396 without restraints) Performing minimization step: 990. Total energy = 1455.6141 kcal/mol (1450.7150 without restraints) Performing minimization step: 991. Total energy = 1455.3876 kcal/mol (1450.4911 without restraints) Performing minimization step: 992. Total energy = 1455.1616 kcal/mol (1450.2676 without restraints) Performing minimization step: 993. Total energy = 1454.9359 kcal/mol (1450.0445 without restraints) Performing minimization step: 994. Total energy = 1454.7108 kcal/mol (1449.8218 without restraints) Performing minimization step: 995. Total energy = 1454.4861 kcal/mol (1449.5996 without restraints) Performing minimization step: 996. Total energy = 1454.2617 kcal/mol (1449.3778 without restraints) Performing minimization step: 997. Total energy = 1454.0379 kcal/mol (1449.1565 without restraints) Performing minimization step: 998. Total energy = 1453.8143 kcal/mol (1448.9355 without restraints) Performing minimization step: 999. Total energy = 1453.5914 kcal/mol (1448.7151 without restraints) Performing minimization step: 1000. Total energy = 1453.3689 kcal/mol (1448.4951 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 1453.1466 kcal/mol (1448.2753 without restraints) Performing minimization step: 1002. Total energy = 1452.9241 kcal/mol (1448.0554 without restraints) Performing minimization step: 1003. Total energy = 1452.7025 kcal/mol (1447.8364 without restraints) Performing minimization step: 1004. Total energy = 1452.4814 kcal/mol (1447.6177 without restraints) Performing minimization step: 1005. Total energy = 1452.2601 kcal/mol (1447.3989 without restraints) Performing minimization step: 1006. Total energy = 1452.0396 kcal/mol (1447.1810 without restraints) Performing minimization step: 1007. Total energy = 1451.8197 kcal/mol (1446.9636 without restraints) Performing minimization step: 1008. Total energy = 1451.5998 kcal/mol (1446.7462 without restraints) Performing minimization step: 1009. Total energy = 1451.3806 kcal/mol (1446.5297 without restraints) Performing minimization step: 1010. Total energy = 1451.1621 kcal/mol (1446.3135 without restraints) Performing minimization step: 1011. Total energy = 1450.9437 kcal/mol (1446.0976 without restraints) Performing minimization step: 1012. Total energy = 1450.7256 kcal/mol (1445.8821 without restraints) Performing minimization step: 1013. Total energy = 1450.5082 kcal/mol (1445.6672 without restraints) Performing minimization step: 1014. Total energy = 1450.2910 kcal/mol (1445.4526 without restraints) Performing minimization step: 1015. Total energy = 1450.0744 kcal/mol (1445.2384 without restraints) Performing minimization step: 1016. Total energy = 1449.8576 kcal/mol (1445.0240 without restraints) Performing minimization step: 1017. Total energy = 1449.6413 kcal/mol (1444.8104 without restraints) Performing minimization step: 1018. Total energy = 1449.4254 kcal/mol (1444.5968 without restraints) Performing minimization step: 1019. Total energy = 1449.2106 kcal/mol (1444.3846 without restraints) Performing minimization step: 1020. Total energy = 1448.9955 kcal/mol (1444.1721 without restraints) Performing minimization step: 1021. Total energy = 1448.7809 kcal/mol (1443.9599 without restraints) Performing minimization step: 1022. Total energy = 1448.5668 kcal/mol (1443.7483 without restraints) Performing minimization step: 1023. Total energy = 1448.3529 kcal/mol (1443.5369 without restraints) Performing minimization step: 1024. Total energy = 1448.1392 kcal/mol (1443.3259 without restraints) Performing minimization step: 1025. Total energy = 1447.9257 kcal/mol (1443.1148 without restraints) Performing minimization step: 1026. Total energy = 1447.7129 kcal/mol (1442.9045 without restraints) Performing minimization step: 1027. Total energy = 1447.5005 kcal/mol (1442.6945 without restraints) Performing minimization step: 1028. Total energy = 1447.2884 kcal/mol (1442.4850 without restraints) Performing minimization step: 1029. Total energy = 1447.0765 kcal/mol (1442.2755 without restraints) Performing minimization step: 1030. Total energy = 1446.8650 kcal/mol (1442.0665 without restraints) Performing minimization step: 1031. Total energy = 1446.6539 kcal/mol (1441.8579 without restraints) Performing minimization step: 1032. Total energy = 1446.4429 kcal/mol (1441.6494 without restraints) Performing minimization step: 1033. Total energy = 1446.2326 kcal/mol (1441.4416 without restraints) Performing minimization step: 1034. Total energy = 1446.0224 kcal/mol (1441.2339 without restraints) Performing minimization step: 1035. Total energy = 1445.8128 kcal/mol (1441.0268 without restraints) Performing minimization step: 1036. Total energy = 1445.6033 kcal/mol (1440.8198 without restraints) Performing minimization step: 1037. Total energy = 1445.3944 kcal/mol (1440.6133 without restraints) Performing minimization step: 1038. Total energy = 1445.1858 kcal/mol (1440.4072 without restraints) Performing minimization step: 1039. Total energy = 1444.9776 kcal/mol (1440.2015 without restraints) Performing minimization step: 1040. Total energy = 1444.7697 kcal/mol (1439.9961 without restraints) Performing minimization step: 1041. Total energy = 1444.5622 kcal/mol (1439.7911 without restraints) Performing minimization step: 1042. Total energy = 1444.3551 kcal/mol (1439.5864 without restraints) Performing minimization step: 1043. Total energy = 1444.1480 kcal/mol (1439.3817 without restraints) Performing minimization step: 1044. Total energy = 1443.9414 kcal/mol (1439.1777 without restraints) Performing minimization step: 1045. Total energy = 1443.7352 kcal/mol (1438.9739 without restraints) Performing minimization step: 1046. Total energy = 1443.5293 kcal/mol (1438.7704 without restraints) Performing minimization step: 1047. Total energy = 1443.3231 kcal/mol (1438.5667 without restraints) Performing minimization step: 1048. Total energy = 1443.1179 kcal/mol (1438.3640 without restraints) Performing minimization step: 1049. Total energy = 1442.9130 kcal/mol (1438.1617 without restraints) Performing minimization step: 1050. Total energy = 1442.7084 kcal/mol (1437.9595 without restraints) Performing minimization step: 1051. Total energy = 1442.5043 kcal/mol (1437.7578 without restraints) Performing minimization step: 1052. Total energy = 1442.3003 kcal/mol (1437.5563 without restraints) Performing minimization step: 1053. Total energy = 1442.0965 kcal/mol (1437.3550 without restraints) Performing minimization step: 1054. Total energy = 1441.8930 kcal/mol (1437.1539 without restraints) Performing minimization step: 1055. Total energy = 1441.6901 kcal/mol (1436.9535 without restraints) Performing minimization step: 1056. Total energy = 1441.4876 kcal/mol (1436.7534 without restraints) Performing minimization step: 1057. Total energy = 1441.2852 kcal/mol (1436.5534 without restraints) Performing minimization step: 1058. Total energy = 1441.0832 kcal/mol (1436.3540 without restraints) Performing minimization step: 1059. Total energy = 1440.8817 kcal/mol (1436.1549 without restraints) Performing minimization step: 1060. Total energy = 1440.6804 kcal/mol (1435.9561 without restraints) Performing minimization step: 1061. Total energy = 1440.4795 kcal/mol (1435.7576 without restraints) Performing minimization step: 1062. Total energy = 1440.2790 kcal/mol (1435.5596 without restraints) Performing minimization step: 1063. Total energy = 1440.0786 kcal/mol (1435.3616 without restraints) Performing minimization step: 1064. Total energy = 1439.8785 kcal/mol (1435.1640 without restraints) Performing minimization step: 1065. Total energy = 1439.6788 kcal/mol (1434.9668 without restraints) Performing minimization step: 1066. Total energy = 1439.4796 kcal/mol (1434.7700 without restraints) Performing minimization step: 1067. Total energy = 1439.2808 kcal/mol (1434.5737 without restraints) Performing minimization step: 1068. Total energy = 1439.0819 kcal/mol (1434.3772 without restraints) Performing minimization step: 1069. Total energy = 1438.8830 kcal/mol (1434.1807 without restraints) Performing minimization step: 1070. Total energy = 1438.6848 kcal/mol (1433.9850 without restraints) Performing minimization step: 1071. Total energy = 1438.4870 kcal/mol (1433.7896 without restraints) Performing minimization step: 1072. Total energy = 1438.2894 kcal/mol (1433.5945 without restraints) Performing minimization step: 1073. Total energy = 1438.0921 kcal/mol (1433.3994 without restraints) Performing minimization step: 1074. Total energy = 1437.8951 kcal/mol (1433.2050 without restraints) Performing minimization step: 1075. Total energy = 1437.6985 kcal/mol (1433.0108 without restraints) Performing minimization step: 1076. Total energy = 1437.5020 kcal/mol (1432.8167 without restraints) Performing minimization step: 1077. Total energy = 1437.3060 kcal/mol (1432.6232 without restraints) Performing minimization step: 1078. Total energy = 1437.1104 kcal/mol (1432.4300 without restraints) Performing minimization step: 1079. Total energy = 1436.9146 kcal/mol (1432.2367 without restraints) Performing minimization step: 1080. Total energy = 1436.7195 kcal/mol (1432.0440 without restraints) Performing minimization step: 1081. Total energy = 1436.5244 kcal/mol (1431.8513 without restraints) Performing minimization step: 1082. Total energy = 1436.3299 kcal/mol (1431.6592 without restraints) Performing minimization step: 1083. Total energy = 1436.1355 kcal/mol (1431.4673 without restraints) Performing minimization step: 1084. Total energy = 1435.9418 kcal/mol (1431.2760 without restraints) Performing minimization step: 1085. Total energy = 1435.7483 kcal/mol (1431.0849 without restraints) Performing minimization step: 1086. Total energy = 1435.5550 kcal/mol (1430.8940 without restraints) Performing minimization step: 1087. Total energy = 1435.3619 kcal/mol (1430.7033 without restraints) Performing minimization step: 1088. Total energy = 1435.1691 kcal/mol (1430.5129 without restraints) Performing minimization step: 1089. Total energy = 1434.9765 kcal/mol (1430.3228 without restraints) Performing minimization step: 1090. Total energy = 1434.7843 kcal/mol (1430.1329 without restraints) Performing minimization step: 1091. Total energy = 1434.5921 kcal/mol (1429.9432 without restraints) Performing minimization step: 1092. Total energy = 1434.4004 kcal/mol (1429.7539 without restraints) Performing minimization step: 1093. Total energy = 1434.2086 kcal/mol (1429.5645 without restraints) Performing minimization step: 1094. Total energy = 1434.0176 kcal/mol (1429.3758 without restraints) Performing minimization step: 1095. Total energy = 1433.8267 kcal/mol (1429.1874 without restraints) Performing minimization step: 1096. Total energy = 1433.6363 kcal/mol (1428.9995 without restraints) Performing minimization step: 1097. Total energy = 1433.4462 kcal/mol (1428.8117 without restraints) Performing minimization step: 1098. Total energy = 1433.2563 kcal/mol (1428.6243 without restraints) Performing minimization step: 1099. Total energy = 1433.0669 kcal/mol (1428.4372 without restraints) Performing minimization step: 1100. Total energy = 1432.8770 kcal/mol (1428.2497 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 1432.6878 kcal/mol (1428.0630 without restraints) Performing minimization step: 1102. Total energy = 1432.4990 kcal/mol (1427.8765 without restraints) Performing minimization step: 1103. Total energy = 1432.3104 kcal/mol (1427.6903 without restraints) Performing minimization step: 1104. Total energy = 1432.1222 kcal/mol (1427.5044 without restraints) Performing minimization step: 1105. Total energy = 1431.9340 kcal/mol (1427.3187 without restraints) Performing minimization step: 1106. Total energy = 1431.7459 kcal/mol (1427.1330 without restraints) Performing minimization step: 1107. Total energy = 1431.5583 kcal/mol (1426.9478 without restraints) Performing minimization step: 1108. Total energy = 1431.3710 kcal/mol (1426.7628 without restraints) Performing minimization step: 1109. Total energy = 1431.1837 kcal/mol (1426.5779 without restraints) Performing minimization step: 1110. Total energy = 1430.9968 kcal/mol (1426.3934 without restraints) Performing minimization step: 1111. Total energy = 1430.8104 kcal/mol (1426.2094 without restraints) Performing minimization step: 1112. Total energy = 1430.6241 kcal/mol (1426.0255 without restraints) Performing minimization step: 1113. Total energy = 1430.4380 kcal/mol (1425.8416 without restraints) Performing minimization step: 1114. Total energy = 1430.2519 kcal/mol (1425.6581 without restraints) Performing minimization step: 1115. Total energy = 1430.0660 kcal/mol (1425.4745 without restraints) Performing minimization step: 1116. Total energy = 1429.8808 kcal/mol (1425.2917 without restraints) Performing minimization step: 1117. Total energy = 1429.6962 kcal/mol (1425.1094 without restraints) Performing minimization step: 1118. Total energy = 1429.5115 kcal/mol (1424.9271 without restraints) Performing minimization step: 1119. Total energy = 1429.3270 kcal/mol (1424.7450 without restraints) Performing minimization step: 1120. Total energy = 1429.1430 kcal/mol (1424.5635 without restraints) Performing minimization step: 1121. Total energy = 1428.9590 kcal/mol (1424.3816 without restraints) Performing minimization step: 1122. Total energy = 1428.7754 kcal/mol (1424.2006 without restraints) Performing minimization step: 1123. Total energy = 1428.5923 kcal/mol (1424.0197 without restraints) Performing minimization step: 1124. Total energy = 1428.4091 kcal/mol (1423.8389 without restraints) Performing minimization step: 1125. Total energy = 1428.2263 kcal/mol (1423.6586 without restraints) Performing minimization step: 1126. Total energy = 1428.0437 kcal/mol (1423.4782 without restraints) Performing minimization step: 1127. Total energy = 1427.8611 kcal/mol (1423.2981 without restraints) Performing minimization step: 1128. Total energy = 1427.6790 kcal/mol (1423.1183 without restraints) Performing minimization step: 1129. Total energy = 1427.4971 kcal/mol (1422.9387 without restraints) Performing minimization step: 1130. Total energy = 1427.3154 kcal/mol (1422.7593 without restraints) Performing minimization step: 1131. Total energy = 1427.1342 kcal/mol (1422.5805 without restraints) Performing minimization step: 1132. Total energy = 1426.9532 kcal/mol (1422.4019 without restraints) Performing minimization step: 1133. Total energy = 1426.7724 kcal/mol (1422.2234 without restraints) Performing minimization step: 1134. Total energy = 1426.5917 kcal/mol (1422.0450 without restraints) Performing minimization step: 1135. Total energy = 1426.4113 kcal/mol (1421.8671 without restraints) Performing minimization step: 1136. Total energy = 1426.2312 kcal/mol (1421.6893 without restraints) Performing minimization step: 1137. Total energy = 1426.0513 kcal/mol (1421.5117 without restraints) Performing minimization step: 1138. Total energy = 1425.8708 kcal/mol (1421.3336 without restraints) Performing minimization step: 1139. Total energy = 1425.6914 kcal/mol (1421.1565 without restraints) Performing minimization step: 1140. Total energy = 1425.5121 kcal/mol (1420.9796 without restraints) Performing minimization step: 1141. Total energy = 1425.3328 kcal/mol (1420.8025 without restraints) Performing minimization step: 1142. Total energy = 1425.1544 kcal/mol (1420.6265 without restraints) Performing minimization step: 1143. Total energy = 1424.9760 kcal/mol (1420.4505 without restraints) Performing minimization step: 1144. Total energy = 1424.7977 kcal/mol (1420.2744 without restraints) Performing minimization step: 1145. Total energy = 1424.6197 kcal/mol (1420.0988 without restraints) Performing minimization step: 1146. Total energy = 1424.4422 kcal/mol (1419.9236 without restraints) Performing minimization step: 1147. Total energy = 1424.2648 kcal/mol (1419.7485 without restraints) Performing minimization step: 1148. Total energy = 1424.0872 kcal/mol (1419.5733 without restraints) Performing minimization step: 1149. Total energy = 1423.9100 kcal/mol (1419.3984 without restraints) Performing minimization step: 1150. Total energy = 1423.7330 kcal/mol (1419.2237 without restraints) Performing minimization step: 1151. Total energy = 1423.5561 kcal/mol (1419.0491 without restraints) Performing minimization step: 1152. Total energy = 1423.3793 kcal/mol (1418.8747 without restraints) Performing minimization step: 1153. Total energy = 1423.2028 kcal/mol (1418.7005 without restraints) Performing minimization step: 1154. Total energy = 1423.0267 kcal/mol (1418.5268 without restraints) Performing minimization step: 1155. Total energy = 1422.8509 kcal/mol (1418.3533 without restraints) Performing minimization step: 1156. Total energy = 1422.6755 kcal/mol (1418.1802 without restraints) Performing minimization step: 1157. Total energy = 1422.5001 kcal/mol (1418.0070 without restraints) Performing minimization step: 1158. Total energy = 1422.3249 kcal/mol (1417.8342 without restraints) Performing minimization step: 1159. Total energy = 1422.1500 kcal/mol (1417.6615 without restraints) Performing minimization step: 1160. Total energy = 1421.9751 kcal/mol (1417.4889 without restraints) Performing minimization step: 1161. Total energy = 1421.8006 kcal/mol (1417.3168 without restraints) Performing minimization step: 1162. Total energy = 1421.6263 kcal/mol (1417.1448 without restraints) Performing minimization step: 1163. Total energy = 1421.4516 kcal/mol (1416.9724 without restraints) Performing minimization step: 1164. Total energy = 1421.2778 kcal/mol (1416.8009 without restraints) Performing minimization step: 1165. Total energy = 1421.1040 kcal/mol (1416.6294 without restraints) Performing minimization step: 1166. Total energy = 1420.9306 kcal/mol (1416.4583 without restraints) Performing minimization step: 1167. Total energy = 1420.7574 kcal/mol (1416.2874 without restraints) Performing minimization step: 1168. Total energy = 1420.5845 kcal/mol (1416.1167 without restraints) Performing minimization step: 1169. Total energy = 1420.4115 kcal/mol (1415.9461 without restraints) Performing minimization step: 1170. Total energy = 1420.2390 kcal/mol (1415.7759 without restraints) Performing minimization step: 1171. Total energy = 1420.0667 kcal/mol (1415.6058 without restraints) Performing minimization step: 1172. Total energy = 1419.8951 kcal/mol (1415.4366 without restraints) Performing minimization step: 1173. Total energy = 1419.7232 kcal/mol (1415.2670 without restraints) Performing minimization step: 1174. Total energy = 1419.5515 kcal/mol (1415.0976 without restraints) Performing minimization step: 1175. Total energy = 1419.3803 kcal/mol (1414.9286 without restraints) Performing minimization step: 1176. Total energy = 1419.2090 kcal/mol (1414.7596 without restraints) Performing minimization step: 1177. Total energy = 1419.0376 kcal/mol (1414.5905 without restraints) Performing minimization step: 1178. Total energy = 1418.8666 kcal/mol (1414.4218 without restraints) Performing minimization step: 1179. Total energy = 1418.6959 kcal/mol (1414.2534 without restraints) Performing minimization step: 1180. Total energy = 1418.5256 kcal/mol (1414.0854 without restraints) Performing minimization step: 1181. Total energy = 1418.3555 kcal/mol (1413.9176 without restraints) Performing minimization step: 1182. Total energy = 1418.1856 kcal/mol (1413.7498 without restraints) Performing minimization step: 1183. Total energy = 1418.0158 kcal/mol (1413.5824 without restraints) Performing minimization step: 1184. Total energy = 1417.8467 kcal/mol (1413.4154 without restraints) Performing minimization step: 1185. Total energy = 1417.6771 kcal/mol (1413.2482 without restraints) Performing minimization step: 1186. Total energy = 1417.5077 kcal/mol (1413.0811 without restraints) Performing minimization step: 1187. Total energy = 1417.3389 kcal/mol (1412.9145 without restraints) Performing minimization step: 1188. Total energy = 1417.1703 kcal/mol (1412.7481 without restraints) Performing minimization step: 1189. Total energy = 1417.0016 kcal/mol (1412.5817 without restraints) Performing minimization step: 1190. Total energy = 1416.8332 kcal/mol (1412.4156 without restraints) Performing minimization step: 1191. Total energy = 1416.6649 kcal/mol (1412.2496 without restraints) Performing minimization step: 1192. Total energy = 1416.4968 kcal/mol (1412.0837 without restraints) Performing minimization step: 1193. Total energy = 1416.3290 kcal/mol (1411.9182 without restraints) Performing minimization step: 1194. Total energy = 1416.1610 kcal/mol (1411.7525 without restraints) Performing minimization step: 1195. Total energy = 1415.9936 kcal/mol (1411.5873 without restraints) Performing minimization step: 1196. Total energy = 1415.8262 kcal/mol (1411.4221 without restraints) Performing minimization step: 1197. Total energy = 1415.6591 kcal/mol (1411.2573 without restraints) Performing minimization step: 1198. Total energy = 1415.4922 kcal/mol (1411.0926 without restraints) Performing minimization step: 1199. Total energy = 1415.3255 kcal/mol (1410.9282 without restraints) Performing minimization step: 1200. Total energy = 1415.1588 kcal/mol (1410.7638 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 1414.9925 kcal/mol (1410.5997 without restraints) Performing minimization step: 1202. Total energy = 1414.8265 kcal/mol (1410.4359 without restraints) Performing minimization step: 1203. Total energy = 1414.6604 kcal/mol (1410.2720 without restraints) Performing minimization step: 1204. Total energy = 1414.4947 kcal/mol (1410.1086 without restraints) Performing minimization step: 1205. Total energy = 1414.3295 kcal/mol (1409.9457 without restraints) Performing minimization step: 1206. Total energy = 1414.1642 kcal/mol (1409.7826 without restraints) Performing minimization step: 1207. Total energy = 1413.9989 kcal/mol (1409.6195 without restraints) Performing minimization step: 1208. Total energy = 1413.8338 kcal/mol (1409.4567 without restraints) Performing minimization step: 1209. Total energy = 1413.6691 kcal/mol (1409.2942 without restraints) Performing minimization step: 1210. Total energy = 1413.5045 kcal/mol (1409.1318 without restraints) Performing minimization step: 1211. Total energy = 1413.3401 kcal/mol (1408.9697 without restraints) Performing minimization step: 1212. Total energy = 1413.1759 kcal/mol (1408.8077 without restraints) Performing minimization step: 1213. Total energy = 1413.0116 kcal/mol (1408.6454 without restraints) Performing minimization step: 1214. Total energy = 1412.8473 kcal/mol (1408.4836 without restraints) Performing minimization step: 1215. Total energy = 1412.6834 kcal/mol (1408.3219 without restraints) Performing minimization step: 1216. Total energy = 1412.5200 kcal/mol (1408.1607 without restraints) Performing minimization step: 1217. Total energy = 1412.3563 kcal/mol (1407.9992 without restraints) Performing minimization step: 1218. Total energy = 1412.1931 kcal/mol (1407.8382 without restraints) Performing minimization step: 1219. Total energy = 1412.0301 kcal/mol (1407.6773 without restraints) Performing minimization step: 1220. Total energy = 1411.8674 kcal/mol (1407.5170 without restraints) Performing minimization step: 1221. Total energy = 1411.7050 kcal/mol (1407.3568 without restraints) Performing minimization step: 1222. Total energy = 1411.5427 kcal/mol (1407.1966 without restraints) Performing minimization step: 1223. Total energy = 1411.3801 kcal/mol (1407.0362 without restraints) Performing minimization step: 1224. Total energy = 1411.2181 kcal/mol (1406.8765 without restraints) Performing minimization step: 1225. Total energy = 1411.0562 kcal/mol (1406.7169 without restraints) Performing minimization step: 1226. Total energy = 1410.8946 kcal/mol (1406.5574 without restraints) Performing minimization step: 1227. Total energy = 1410.7331 kcal/mol (1406.3981 without restraints) Performing minimization step: 1228. Total energy = 1410.5718 kcal/mol (1406.2390 without restraints) Performing minimization step: 1229. Total energy = 1410.4109 kcal/mol (1406.0803 without restraints) Performing minimization step: 1230. Total energy = 1410.2495 kcal/mol (1405.9211 without restraints) Performing minimization step: 1231. Total energy = 1410.0886 kcal/mol (1405.7624 without restraints) Performing minimization step: 1232. Total energy = 1409.9279 kcal/mol (1405.6039 without restraints) Performing minimization step: 1233. Total energy = 1409.7676 kcal/mol (1405.4457 without restraints) Performing minimization step: 1234. Total energy = 1409.6068 kcal/mol (1405.2871 without restraints) Performing minimization step: 1235. Total energy = 1409.4466 kcal/mol (1405.1292 without restraints) Performing minimization step: 1236. Total energy = 1409.2871 kcal/mol (1404.9719 without restraints) Performing minimization step: 1237. Total energy = 1409.1273 kcal/mol (1404.8143 without restraints) Performing minimization step: 1238. Total energy = 1408.9677 kcal/mol (1404.6569 without restraints) Performing minimization step: 1239. Total energy = 1408.8081 kcal/mol (1404.4994 without restraints) Performing minimization step: 1240. Total energy = 1408.6489 kcal/mol (1404.3424 without restraints) Performing minimization step: 1241. Total energy = 1408.4896 kcal/mol (1404.1852 without restraints) Performing minimization step: 1242. Total energy = 1408.3304 kcal/mol (1404.0283 without restraints) Performing minimization step: 1243. Total energy = 1408.1717 kcal/mol (1403.8717 without restraints) Performing minimization step: 1244. Total energy = 1408.0132 kcal/mol (1403.7155 without restraints) Performing minimization step: 1245. Total energy = 1407.8549 kcal/mol (1403.5592 without restraints) Performing minimization step: 1246. Total energy = 1407.6964 kcal/mol (1403.4029 without restraints) Performing minimization step: 1247. Total energy = 1407.5383 kcal/mol (1403.2470 without restraints) Performing minimization step: 1248. Total energy = 1407.3803 kcal/mol (1403.0912 without restraints) Performing minimization step: 1249. Total energy = 1407.2222 kcal/mol (1402.9352 without restraints) Performing minimization step: 1250. Total energy = 1407.0645 kcal/mol (1402.7798 without restraints) Performing minimization step: 1251. Total energy = 1406.9072 kcal/mol (1402.6246 without restraints) Performing minimization step: 1252. Total energy = 1406.7500 kcal/mol (1402.4697 without restraints) Performing minimization step: 1253. Total energy = 1406.5930 kcal/mol (1402.3147 without restraints) Performing minimization step: 1254. Total energy = 1406.4361 kcal/mol (1402.1599 without restraints) Performing minimization step: 1255. Total energy = 1406.2792 kcal/mol (1402.0052 without restraints) Performing minimization step: 1256. Total energy = 1406.1225 kcal/mol (1401.8507 without restraints) Performing minimization step: 1257. Total energy = 1405.9663 kcal/mol (1401.6967 without restraints) Performing minimization step: 1258. Total energy = 1405.8100 kcal/mol (1401.5425 without restraints) Performing minimization step: 1259. Total energy = 1405.6534 kcal/mol (1401.3881 without restraints) Performing minimization step: 1260. Total energy = 1405.4975 kcal/mol (1401.2343 without restraints) Performing minimization step: 1261. Total energy = 1405.3418 kcal/mol (1401.0808 without restraints) Performing minimization step: 1262. Total energy = 1405.1864 kcal/mol (1400.9275 without restraints) Performing minimization step: 1263. Total energy = 1405.0309 kcal/mol (1400.7741 without restraints) Performing minimization step: 1264. Total energy = 1404.8755 kcal/mol (1400.6209 without restraints) Performing minimization step: 1265. Total energy = 1404.7204 kcal/mol (1400.4679 without restraints) Performing minimization step: 1266. Total energy = 1404.5652 kcal/mol (1400.3148 without restraints) Performing minimization step: 1267. Total energy = 1404.4102 kcal/mol (1400.1621 without restraints) Performing minimization step: 1268. Total energy = 1404.2555 kcal/mol (1400.0094 without restraints) Performing minimization step: 1269. Total energy = 1404.1009 kcal/mol (1399.8570 without restraints) Performing minimization step: 1270. Total energy = 1403.9467 kcal/mol (1399.7050 without restraints) Performing minimization step: 1271. Total energy = 1403.7925 kcal/mol (1399.5528 without restraints) Performing minimization step: 1272. Total energy = 1403.6381 kcal/mol (1399.4006 without restraints) Performing minimization step: 1273. Total energy = 1403.4842 kcal/mol (1399.2488 without restraints) Performing minimization step: 1274. Total energy = 1403.3304 kcal/mol (1399.0971 without restraints) Performing minimization step: 1275. Total energy = 1403.1763 kcal/mol (1398.9451 without restraints) Performing minimization step: 1276. Total energy = 1403.0223 kcal/mol (1398.7933 without restraints) Performing minimization step: 1277. Total energy = 1402.8688 kcal/mol (1398.6419 without restraints) Performing minimization step: 1278. Total energy = 1402.7154 kcal/mol (1398.4906 without restraints) Performing minimization step: 1279. Total energy = 1402.5618 kcal/mol (1398.3390 without restraints) Performing minimization step: 1280. Total energy = 1402.4088 kcal/mol (1398.1882 without restraints) Performing minimization step: 1281. Total energy = 1402.2560 kcal/mol (1398.0376 without restraints) Performing minimization step: 1282. Total energy = 1402.1035 kcal/mol (1397.8872 without restraints) Performing minimization step: 1283. Total energy = 1401.9511 kcal/mol (1397.7369 without restraints) Performing minimization step: 1284. Total energy = 1401.7987 kcal/mol (1397.5865 without restraints) Performing minimization step: 1285. Total energy = 1401.6462 kcal/mol (1397.4362 without restraints) Performing minimization step: 1286. Total energy = 1401.4940 kcal/mol (1397.2861 without restraints) Performing minimization step: 1287. Total energy = 1401.3422 kcal/mol (1397.1364 without restraints) Performing minimization step: 1288. Total energy = 1401.1906 kcal/mol (1396.9869 without restraints) Performing minimization step: 1289. Total energy = 1401.0388 kcal/mol (1396.8373 without restraints) Performing minimization step: 1290. Total energy = 1400.8874 kcal/mol (1396.6879 without restraints) Performing minimization step: 1291. Total energy = 1400.7363 kcal/mol (1396.5390 without restraints) Performing minimization step: 1292. Total energy = 1400.5852 kcal/mol (1396.3900 without restraints) Performing minimization step: 1293. Total energy = 1400.4342 kcal/mol (1396.2411 without restraints) Performing minimization step: 1294. Total energy = 1400.2834 kcal/mol (1396.0924 without restraints) Performing minimization step: 1295. Total energy = 1400.1329 kcal/mol (1395.9440 without restraints) Performing minimization step: 1296. Total energy = 1399.9825 kcal/mol (1395.7956 without restraints) Performing minimization step: 1297. Total energy = 1399.8321 kcal/mol (1395.6473 without restraints) Performing minimization step: 1298. Total energy = 1399.6821 kcal/mol (1395.4994 without restraints) Performing minimization step: 1299. Total energy = 1399.5320 kcal/mol (1395.3514 without restraints) Performing minimization step: 1300. Total energy = 1399.3821 kcal/mol (1395.2036 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 1399.2322 kcal/mol (1395.0558 without restraints) Performing minimization step: 1302. Total energy = 1399.0823 kcal/mol (1394.9080 without restraints) Performing minimization step: 1303. Total energy = 1398.9328 kcal/mol (1394.7605 without restraints) Performing minimization step: 1304. Total energy = 1398.7832 kcal/mol (1394.6130 without restraints) Performing minimization step: 1305. Total energy = 1398.6343 kcal/mol (1394.4664 without restraints) Performing minimization step: 1306. Total energy = 1398.4851 kcal/mol (1394.3191 without restraints) Performing minimization step: 1307. Total energy = 1398.3360 kcal/mol (1394.1720 without restraints) Performing minimization step: 1308. Total energy = 1398.1871 kcal/mol (1394.0252 without restraints) Performing minimization step: 1309. Total energy = 1398.0384 kcal/mol (1393.8786 without restraints) Performing minimization step: 1310. Total energy = 1397.8899 kcal/mol (1393.7320 without restraints) Performing minimization step: 1311. Total energy = 1397.7415 kcal/mol (1393.5858 without restraints) Performing minimization step: 1312. Total energy = 1397.5933 kcal/mol (1393.4397 without restraints) Performing minimization step: 1313. Total energy = 1397.4449 kcal/mol (1393.2934 without restraints) Performing minimization step: 1314. Total energy = 1397.2969 kcal/mol (1393.1474 without restraints) Performing minimization step: 1315. Total energy = 1397.1490 kcal/mol (1393.0016 without restraints) Performing minimization step: 1316. Total energy = 1397.0008 kcal/mol (1392.8555 without restraints) Performing minimization step: 1317. Total energy = 1396.8529 kcal/mol (1392.7095 without restraints) Performing minimization step: 1318. Total energy = 1396.7054 kcal/mol (1392.5641 without restraints) Performing minimization step: 1319. Total energy = 1396.5582 kcal/mol (1392.4190 without restraints) Performing minimization step: 1320. Total energy = 1396.4110 kcal/mol (1392.2739 without restraints) Performing minimization step: 1321. Total energy = 1396.2646 kcal/mol (1392.1295 without restraints) Performing minimization step: 1322. Total energy = 1396.1177 kcal/mol (1391.9846 without restraints) Performing minimization step: 1323. Total energy = 1395.9708 kcal/mol (1391.8397 without restraints) Performing minimization step: 1324. Total energy = 1395.8238 kcal/mol (1391.6948 without restraints) Performing minimization step: 1325. Total energy = 1395.6772 kcal/mol (1391.5504 without restraints) Performing minimization step: 1326. Total energy = 1395.5308 kcal/mol (1391.4060 without restraints) Performing minimization step: 1327. Total energy = 1395.3844 kcal/mol (1391.2616 without restraints) Performing minimization step: 1328. Total energy = 1395.2381 kcal/mol (1391.1174 without restraints) Performing minimization step: 1329. Total energy = 1395.0922 kcal/mol (1390.9736 without restraints) Performing minimization step: 1330. Total energy = 1394.9468 kcal/mol (1390.8302 without restraints) Performing minimization step: 1331. Total energy = 1394.8011 kcal/mol (1390.6864 without restraints) Performing minimization step: 1332. Total energy = 1394.6556 kcal/mol (1390.5430 without restraints) Performing minimization step: 1333. Total energy = 1394.5099 kcal/mol (1390.3993 without restraints) Performing minimization step: 1334. Total energy = 1394.3643 kcal/mol (1390.2558 without restraints) Performing minimization step: 1335. Total energy = 1394.2189 kcal/mol (1390.1124 without restraints) Performing minimization step: 1336. Total energy = 1394.0738 kcal/mol (1389.9693 without restraints) Performing minimization step: 1337. Total energy = 1393.9286 kcal/mol (1389.8261 without restraints) Performing minimization step: 1338. Total energy = 1393.7835 kcal/mol (1389.6831 without restraints) Performing minimization step: 1339. Total energy = 1393.6388 kcal/mol (1389.5404 without restraints) Performing minimization step: 1340. Total energy = 1393.4942 kcal/mol (1389.3978 without restraints) Performing minimization step: 1341. Total energy = 1393.3495 kcal/mol (1389.2552 without restraints) Performing minimization step: 1342. Total energy = 1393.2056 kcal/mol (1389.1133 without restraints) Performing minimization step: 1343. Total energy = 1393.0614 kcal/mol (1388.9710 without restraints) Performing minimization step: 1344. Total energy = 1392.9172 kcal/mol (1388.8289 without restraints) Performing minimization step: 1345. Total energy = 1392.7731 kcal/mol (1388.6868 without restraints) Performing minimization step: 1346. Total energy = 1392.6295 kcal/mol (1388.5452 without restraints) Performing minimization step: 1347. Total energy = 1392.4858 kcal/mol (1388.4035 without restraints) Performing minimization step: 1348. Total energy = 1392.3418 kcal/mol (1388.2616 without restraints) Performing minimization step: 1349. Total energy = 1392.1984 kcal/mol (1388.1201 without restraints) Performing minimization step: 1350. Total energy = 1392.0548 kcal/mol (1387.9786 without restraints) Performing minimization step: 1351. Total energy = 1391.9113 kcal/mol (1387.8370 without restraints) Performing minimization step: 1352. Total energy = 1391.7679 kcal/mol (1387.6956 without restraints) Performing minimization step: 1353. Total energy = 1391.6248 kcal/mol (1387.5544 without restraints) Performing minimization step: 1354. Total energy = 1391.4819 kcal/mol (1387.4137 without restraints) Performing minimization step: 1355. Total energy = 1391.3392 kcal/mol (1387.2730 without restraints) Performing minimization step: 1356. Total energy = 1391.1966 kcal/mol (1387.1324 without restraints) Performing minimization step: 1357. Total energy = 1391.0541 kcal/mol (1386.9919 without restraints) Performing minimization step: 1358. Total energy = 1390.9116 kcal/mol (1386.8513 without restraints) Performing minimization step: 1359. Total energy = 1390.7698 kcal/mol (1386.7115 without restraints) Performing minimization step: 1360. Total energy = 1390.6275 kcal/mol (1386.5710 without restraints) Performing minimization step: 1361. Total energy = 1390.4852 kcal/mol (1386.4309 without restraints) Performing minimization step: 1362. Total energy = 1390.3431 kcal/mol (1386.2908 without restraints) Performing minimization step: 1363. Total energy = 1390.2014 kcal/mol (1386.1511 without restraints) Performing minimization step: 1364. Total energy = 1390.0599 kcal/mol (1386.0115 without restraints) Performing minimization step: 1365. Total energy = 1389.9183 kcal/mol (1385.8720 without restraints) Performing minimization step: 1366. Total energy = 1389.7768 kcal/mol (1385.7324 without restraints) Performing minimization step: 1367. Total energy = 1389.6351 kcal/mol (1385.5928 without restraints) Performing minimization step: 1368. Total energy = 1389.4938 kcal/mol (1385.4534 without restraints) Performing minimization step: 1369. Total energy = 1389.3528 kcal/mol (1385.3143 without restraints) Performing minimization step: 1370. Total energy = 1389.2119 kcal/mol (1385.1754 without restraints) Performing minimization step: 1371. Total energy = 1389.0712 kcal/mol (1385.0367 without restraints) Performing minimization step: 1372. Total energy = 1388.9305 kcal/mol (1384.8980 without restraints) Performing minimization step: 1373. Total energy = 1388.7900 kcal/mol (1384.7595 without restraints) Performing minimization step: 1374. Total energy = 1388.6492 kcal/mol (1384.6207 without restraints) Performing minimization step: 1375. Total energy = 1388.5090 kcal/mol (1384.4824 without restraints) Performing minimization step: 1376. Total energy = 1388.3683 kcal/mol (1384.3437 without restraints) Performing minimization step: 1377. Total energy = 1388.2284 kcal/mol (1384.2058 without restraints) Performing minimization step: 1378. Total energy = 1388.0885 kcal/mol (1384.0678 without restraints) Performing minimization step: 1379. Total energy = 1387.9487 kcal/mol (1383.9299 without restraints) Performing minimization step: 1380. Total energy = 1387.8090 kcal/mol (1383.7922 without restraints) Performing minimization step: 1381. Total energy = 1387.6694 kcal/mol (1383.6545 without restraints) Performing minimization step: 1382. Total energy = 1387.5296 kcal/mol (1383.5166 without restraints) Performing minimization step: 1383. Total energy = 1387.3897 kcal/mol (1383.3788 without restraints) Performing minimization step: 1384. Total energy = 1387.2505 kcal/mol (1383.2415 without restraints) Performing minimization step: 1385. Total energy = 1387.1114 kcal/mol (1383.1044 without restraints) Performing minimization step: 1386. Total energy = 1386.9722 kcal/mol (1382.9671 without restraints) Performing minimization step: 1387. Total energy = 1386.8333 kcal/mol (1382.8302 without restraints) Performing minimization step: 1388. Total energy = 1386.6944 kcal/mol (1382.6932 without restraints) Performing minimization step: 1389. Total energy = 1386.5557 kcal/mol (1382.5564 without restraints) Performing minimization step: 1390. Total energy = 1386.4172 kcal/mol (1382.4199 without restraints) Performing minimization step: 1391. Total energy = 1386.2787 kcal/mol (1382.2834 without restraints) Performing minimization step: 1392. Total energy = 1386.1404 kcal/mol (1382.1470 without restraints) Performing minimization step: 1393. Total energy = 1386.0022 kcal/mol (1382.0107 without restraints) Performing minimization step: 1394. Total energy = 1385.8640 kcal/mol (1381.8743 without restraints) Performing minimization step: 1395. Total energy = 1385.7257 kcal/mol (1381.7380 without restraints) Performing minimization step: 1396. Total energy = 1385.5877 kcal/mol (1381.6020 without restraints) Performing minimization step: 1397. Total energy = 1385.4499 kcal/mol (1381.4661 without restraints) Performing minimization step: 1398. Total energy = 1385.3120 kcal/mol (1381.3302 without restraints) Performing minimization step: 1399. Total energy = 1385.1742 kcal/mol (1381.1943 without restraints) Performing minimization step: 1400. Total energy = 1385.0366 kcal/mol (1381.0585 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 1384.8987 kcal/mol (1380.9225 without restraints) Performing minimization step: 1402. Total energy = 1384.7613 kcal/mol (1380.7872 without restraints) Performing minimization step: 1403. Total energy = 1384.6242 kcal/mol (1380.6520 without restraints) Performing minimization step: 1404. Total energy = 1384.4871 kcal/mol (1380.5169 without restraints) Performing minimization step: 1405. Total energy = 1384.3498 kcal/mol (1380.3815 without restraints) Performing minimization step: 1406. Total energy = 1384.2130 kcal/mol (1380.2464 without restraints) Performing minimization step: 1407. Total energy = 1384.0759 kcal/mol (1380.1114 without restraints) Performing minimization step: 1408. Total energy = 1383.9392 kcal/mol (1379.9766 without restraints) Performing minimization step: 1409. Total energy = 1383.8030 kcal/mol (1379.8424 without restraints) Performing minimization step: 1410. Total energy = 1383.6667 kcal/mol (1379.7080 without restraints) Performing minimization step: 1411. Total energy = 1383.5305 kcal/mol (1379.5736 without restraints) Performing minimization step: 1412. Total energy = 1383.3944 kcal/mol (1379.4394 without restraints) Performing minimization step: 1413. Total energy = 1383.2579 kcal/mol (1379.3048 without restraints) Performing minimization step: 1414. Total energy = 1383.1219 kcal/mol (1379.1708 without restraints) Performing minimization step: 1415. Total energy = 1382.9862 kcal/mol (1379.0371 without restraints) Performing minimization step: 1416. Total energy = 1382.8506 kcal/mol (1378.9033 without restraints) Performing minimization step: 1417. Total energy = 1382.7146 kcal/mol (1378.7692 without restraints) Performing minimization step: 1418. Total energy = 1382.5789 kcal/mol (1378.6354 without restraints) Performing minimization step: 1419. Total energy = 1382.4435 kcal/mol (1378.5019 without restraints) Performing minimization step: 1420. Total energy = 1382.3083 kcal/mol (1378.3686 without restraints) Performing minimization step: 1421. Total energy = 1382.1730 kcal/mol (1378.2351 without restraints) Performing minimization step: 1422. Total energy = 1382.0378 kcal/mol (1378.1019 without restraints) Performing minimization step: 1423. Total energy = 1381.9029 kcal/mol (1377.9688 without restraints) Performing minimization step: 1424. Total energy = 1381.7680 kcal/mol (1377.8358 without restraints) Performing minimization step: 1425. Total energy = 1381.6332 kcal/mol (1377.7029 without restraints) Performing minimization step: 1426. Total energy = 1381.4986 kcal/mol (1377.5702 without restraints) Performing minimization step: 1427. Total energy = 1381.3638 kcal/mol (1377.4373 without restraints) Performing minimization step: 1428. Total energy = 1381.2291 kcal/mol (1377.3045 without restraints) Performing minimization step: 1429. Total energy = 1381.0948 kcal/mol (1377.1721 without restraints) Performing minimization step: 1430. Total energy = 1380.9605 kcal/mol (1377.0397 without restraints) Performing minimization step: 1431. Total energy = 1380.8260 kcal/mol (1376.9070 without restraints) Performing minimization step: 1432. Total energy = 1380.6919 kcal/mol (1376.7748 without restraints) Performing minimization step: 1433. Total energy = 1380.5579 kcal/mol (1376.6427 without restraints) Performing minimization step: 1434. Total energy = 1380.4237 kcal/mol (1376.5104 without restraints) Performing minimization step: 1435. Total energy = 1380.2900 kcal/mol (1376.3785 without restraints) Performing minimization step: 1436. Total energy = 1380.1563 kcal/mol (1376.2467 without restraints) Performing minimization step: 1437. Total energy = 1380.0225 kcal/mol (1376.1148 without restraints) Performing minimization step: 1438. Total energy = 1379.8896 kcal/mol (1375.9837 without restraints) Performing minimization step: 1439. Total energy = 1379.7565 kcal/mol (1375.8525 without restraints) Performing minimization step: 1440. Total energy = 1379.6233 kcal/mol (1375.7211 without restraints) Performing minimization step: 1441. Total energy = 1379.4899 kcal/mol (1375.5897 without restraints) Performing minimization step: 1442. Total energy = 1379.3567 kcal/mol (1375.4583 without restraints) Performing minimization step: 1443. Total energy = 1379.2237 kcal/mol (1375.3271 without restraints) Performing minimization step: 1444. Total energy = 1379.0908 kcal/mol (1375.1961 without restraints) Performing minimization step: 1445. Total energy = 1378.9581 kcal/mol (1375.0653 without restraints) Performing minimization step: 1446. Total energy = 1378.8255 kcal/mol (1374.9346 without restraints) Performing minimization step: 1447. Total energy = 1378.6931 kcal/mol (1374.8040 without restraints) Performing minimization step: 1448. Total energy = 1378.5607 kcal/mol (1374.6734 without restraints) Performing minimization step: 1449. Total energy = 1378.4282 kcal/mol (1374.5428 without restraints) Performing minimization step: 1450. Total energy = 1378.2960 kcal/mol (1374.4124 without restraints) Performing minimization step: 1451. Total energy = 1378.1635 kcal/mol (1374.2817 without restraints) Performing minimization step: 1452. Total energy = 1378.0313 kcal/mol (1374.1515 without restraints) Performing minimization step: 1453. Total energy = 1377.8994 kcal/mol (1374.0214 without restraints) Performing minimization step: 1454. Total energy = 1377.7676 kcal/mol (1373.8915 without restraints) Performing minimization step: 1455. Total energy = 1377.6361 kcal/mol (1373.7618 without restraints) Performing minimization step: 1456. Total energy = 1377.5043 kcal/mol (1373.6317 without restraints) Performing minimization step: 1457. Total energy = 1377.3725 kcal/mol (1373.5018 without restraints) Performing minimization step: 1458. Total energy = 1377.2413 kcal/mol (1373.3727 without restraints) Performing minimization step: 1459. Total energy = 1377.1099 kcal/mol (1373.2429 without restraints) Performing minimization step: 1460. Total energy = 1376.9786 kcal/mol (1373.1135 without restraints) Performing minimization step: 1461. Total energy = 1376.8472 kcal/mol (1372.9839 without restraints) Performing minimization step: 1462. Total energy = 1376.7161 kcal/mol (1372.8545 without restraints) Performing minimization step: 1463. Total energy = 1376.5850 kcal/mol (1372.7254 without restraints) Performing minimization step: 1464. Total energy = 1376.4542 kcal/mol (1372.5964 without restraints) Performing minimization step: 1465. Total energy = 1376.3236 kcal/mol (1372.4677 without restraints) Performing minimization step: 1466. Total energy = 1376.1930 kcal/mol (1372.3386 without restraints) Performing minimization step: 1467. Total energy = 1376.0624 kcal/mol (1372.2101 without restraints) Performing minimization step: 1468. Total energy = 1375.9321 kcal/mol (1372.0817 without restraints) Performing minimization step: 1469. Total energy = 1375.8020 kcal/mol (1371.9533 without restraints) Performing minimization step: 1470. Total energy = 1375.6717 kcal/mol (1371.8247 without restraints) Performing minimization step: 1471. Total energy = 1375.5410 kcal/mol (1371.6959 without restraints) Performing minimization step: 1472. Total energy = 1375.4109 kcal/mol (1371.5677 without restraints) Performing minimization step: 1473. Total energy = 1375.2809 kcal/mol (1371.4395 without restraints) Performing minimization step: 1474. Total energy = 1375.1508 kcal/mol (1371.3112 without restraints) Performing minimization step: 1475. Total energy = 1375.0210 kcal/mol (1371.1833 without restraints) Performing minimization step: 1476. Total energy = 1374.8913 kcal/mol (1371.0553 without restraints) Performing minimization step: 1477. Total energy = 1374.7619 kcal/mol (1370.9277 without restraints) Performing minimization step: 1478. Total energy = 1374.6327 kcal/mol (1370.8006 without restraints) Performing minimization step: 1479. Total energy = 1374.5035 kcal/mol (1370.6730 without restraints) Performing minimization step: 1480. Total energy = 1374.3739 kcal/mol (1370.5452 without restraints) Performing minimization step: 1481. Total energy = 1374.2449 kcal/mol (1370.4180 without restraints) Performing minimization step: 1482. Total energy = 1374.1155 kcal/mol (1370.2904 without restraints) Performing minimization step: 1483. Total energy = 1373.9864 kcal/mol (1370.1631 without restraints) Performing minimization step: 1484. Total energy = 1373.8573 kcal/mol (1370.0358 without restraints) Performing minimization step: 1485. Total energy = 1373.7276 kcal/mol (1369.9078 without restraints) Performing minimization step: 1486. Total energy = 1373.5990 kcal/mol (1369.7811 without restraints) Performing minimization step: 1487. Total energy = 1373.4703 kcal/mol (1369.6542 without restraints) Performing minimization step: 1488. Total energy = 1373.3417 kcal/mol (1369.5274 without restraints) Performing minimization step: 1489. Total energy = 1373.2135 kcal/mol (1369.4009 without restraints) Performing minimization step: 1490. Total energy = 1373.0850 kcal/mol (1369.2743 without restraints) Performing minimization step: 1491. Total energy = 1372.9567 kcal/mol (1369.1478 without restraints) Performing minimization step: 1492. Total energy = 1372.8283 kcal/mol (1369.0211 without restraints) Performing minimization step: 1493. Total energy = 1372.7002 kcal/mol (1368.8948 without restraints) Performing minimization step: 1494. Total energy = 1372.5726 kcal/mol (1368.7690 without restraints) Performing minimization step: 1495. Total energy = 1372.4445 kcal/mol (1368.6425 without restraints) Performing minimization step: 1496. Total energy = 1372.3165 kcal/mol (1368.5164 without restraints) Performing minimization step: 1497. Total energy = 1372.1887 kcal/mol (1368.3904 without restraints) Performing minimization step: 1498. Total energy = 1372.0610 kcal/mol (1368.2646 without restraints) Performing minimization step: 1499. Total energy = 1371.9334 kcal/mol (1368.1387 without restraints) Performing minimization step: 1500. Total energy = 1371.8057 kcal/mol (1368.0128 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 1371.6783 kcal/mol (1367.8871 without restraints) Performing minimization step: 1502. Total energy = 1371.5509 kcal/mol (1367.7616 without restraints) Performing minimization step: 1503. Total energy = 1371.4240 kcal/mol (1367.6364 without restraints) Performing minimization step: 1504. Total energy = 1371.2964 kcal/mol (1367.5106 without restraints) Performing minimization step: 1505. Total energy = 1371.1692 kcal/mol (1367.3851 without restraints) Performing minimization step: 1506. Total energy = 1371.0422 kcal/mol (1367.2599 without restraints) Performing minimization step: 1507. Total energy = 1370.9154 kcal/mol (1367.1348 without restraints) Performing minimization step: 1508. Total energy = 1370.7885 kcal/mol (1367.0098 without restraints) Performing minimization step: 1509. Total energy = 1370.6618 kcal/mol (1366.8848 without restraints) Performing minimization step: 1510. Total energy = 1370.5350 kcal/mol (1366.7596 without restraints) Performing minimization step: 1511. Total energy = 1370.4083 kcal/mol (1366.6347 without restraints) Performing minimization step: 1512. Total energy = 1370.2817 kcal/mol (1366.5100 without restraints) Performing minimization step: 1513. Total energy = 1370.1553 kcal/mol (1366.3853 without restraints) Performing minimization step: 1514. Total energy = 1370.0290 kcal/mol (1366.2608 without restraints) Performing minimization step: 1515. Total energy = 1369.9025 kcal/mol (1366.1360 without restraints) Performing minimization step: 1516. Total energy = 1369.7762 kcal/mol (1366.0115 without restraints) Performing minimization step: 1517. Total energy = 1369.6499 kcal/mol (1365.8870 without restraints) Performing minimization step: 1518. Total energy = 1369.5240 kcal/mol (1365.7628 without restraints) Performing minimization step: 1519. Total energy = 1369.3983 kcal/mol (1365.6388 without restraints) Performing minimization step: 1520. Total energy = 1369.2721 kcal/mol (1365.5144 without restraints) Performing minimization step: 1521. Total energy = 1369.1464 kcal/mol (1365.3905 without restraints) Performing minimization step: 1522. Total energy = 1369.0208 kcal/mol (1365.2666 without restraints) Performing minimization step: 1523. Total energy = 1368.8949 kcal/mol (1365.1424 without restraints) Performing minimization step: 1524. Total energy = 1368.7691 kcal/mol (1365.0184 without restraints) Performing minimization step: 1525. Total energy = 1368.6436 kcal/mol (1364.8946 without restraints) Performing minimization step: 1526. Total energy = 1368.5184 kcal/mol (1364.7711 without restraints) Performing minimization step: 1527. Total energy = 1368.3929 kcal/mol (1364.6473 without restraints) Performing minimization step: 1528. Total energy = 1368.2678 kcal/mol (1364.5240 without restraints) Performing minimization step: 1529. Total energy = 1368.1428 kcal/mol (1364.4008 without restraints) Performing minimization step: 1530. Total energy = 1368.0178 kcal/mol (1364.2774 without restraints) Performing minimization step: 1531. Total energy = 1367.8928 kcal/mol (1364.1543 without restraints) Performing minimization step: 1532. Total energy = 1367.7679 kcal/mol (1364.0311 without restraints) Performing minimization step: 1533. Total energy = 1367.6429 kcal/mol (1363.9077 without restraints) Performing minimization step: 1534. Total energy = 1367.5179 kcal/mol (1363.7845 without restraints) Performing minimization step: 1535. Total energy = 1367.3934 kcal/mol (1363.6618 without restraints) Performing minimization step: 1536. Total energy = 1367.2693 kcal/mol (1363.5393 without restraints) Performing minimization step: 1537. Total energy = 1367.1448 kcal/mol (1363.4166 without restraints) Performing minimization step: 1538. Total energy = 1367.0206 kcal/mol (1363.2941 without restraints) Performing minimization step: 1539. Total energy = 1366.8965 kcal/mol (1363.1717 without restraints) Performing minimization step: 1540. Total energy = 1366.7725 kcal/mol (1363.0494 without restraints) Performing minimization step: 1541. Total energy = 1366.6485 kcal/mol (1362.9272 without restraints) Performing minimization step: 1542. Total energy = 1366.5244 kcal/mol (1362.8048 without restraints) Performing minimization step: 1543. Total energy = 1366.4006 kcal/mol (1362.6826 without restraints) Performing minimization step: 1544. Total energy = 1366.2769 kcal/mol (1362.5606 without restraints) Performing minimization step: 1545. Total energy = 1366.1532 kcal/mol (1362.4387 without restraints) Performing minimization step: 1546. Total energy = 1366.0296 kcal/mol (1362.3168 without restraints) Performing minimization step: 1547. Total energy = 1365.9059 kcal/mol (1362.1948 without restraints) Performing minimization step: 1548. Total energy = 1365.7826 kcal/mol (1362.0732 without restraints) Performing minimization step: 1549. Total energy = 1365.6593 kcal/mol (1361.9516 without restraints) Performing minimization step: 1550. Total energy = 1365.5363 kcal/mol (1361.8303 without restraints) Performing minimization step: 1551. Total energy = 1365.4129 kcal/mol (1361.7086 without restraints) Performing minimization step: 1552. Total energy = 1365.2898 kcal/mol (1361.5872 without restraints) Performing minimization step: 1553. Total energy = 1365.1663 kcal/mol (1361.4655 without restraints) Performing minimization step: 1554. Total energy = 1365.0432 kcal/mol (1361.3438 without restraints) Performing minimization step: 1555. Total energy = 1364.9200 kcal/mol (1361.2225 without restraints) Performing minimization step: 1556. Total energy = 1364.7970 kcal/mol (1361.1012 without restraints) Performing minimization step: 1557. Total energy = 1364.6743 kcal/mol (1360.9802 without restraints) Performing minimization step: 1558. Total energy = 1364.5518 kcal/mol (1360.8593 without restraints) Performing minimization step: 1559. Total energy = 1364.4288 kcal/mol (1360.7381 without restraints) Performing minimization step: 1560. Total energy = 1364.3064 kcal/mol (1360.6173 without restraints) Performing minimization step: 1561. Total energy = 1364.1841 kcal/mol (1360.4968 without restraints) Performing minimization step: 1562. Total energy = 1364.0615 kcal/mol (1360.3758 without restraints) Performing minimization step: 1563. Total energy = 1363.9395 kcal/mol (1360.2555 without restraints) Performing minimization step: 1564. Total energy = 1363.8174 kcal/mol (1360.1351 without restraints) Performing minimization step: 1565. Total energy = 1363.6953 kcal/mol (1360.0147 without restraints) Performing minimization step: 1566. Total energy = 1363.5733 kcal/mol (1359.8943 without restraints) Performing minimization step: 1567. Total energy = 1363.4514 kcal/mol (1359.7740 without restraints) Performing minimization step: 1568. Total energy = 1363.3294 kcal/mol (1359.6539 without restraints) Performing minimization step: 1569. Total energy = 1363.2076 kcal/mol (1359.5338 without restraints) Performing minimization step: 1570. Total energy = 1363.0860 kcal/mol (1359.4138 without restraints) Performing minimization step: 1571. Total energy = 1362.9645 kcal/mol (1359.2939 without restraints) Performing minimization step: 1572. Total energy = 1362.8430 kcal/mol (1359.1741 without restraints) Performing minimization step: 1573. Total energy = 1362.7216 kcal/mol (1359.0544 without restraints) Performing minimization step: 1574. Total energy = 1362.6001 kcal/mol (1358.9346 without restraints) Performing minimization step: 1575. Total energy = 1362.4788 kcal/mol (1358.8149 without restraints) Performing minimization step: 1576. Total energy = 1362.3575 kcal/mol (1358.6952 without restraints) Performing minimization step: 1577. Total energy = 1362.2366 kcal/mol (1358.5760 without restraints) Performing minimization step: 1578. Total energy = 1362.1156 kcal/mol (1358.4569 without restraints) Performing minimization step: 1579. Total energy = 1361.9950 kcal/mol (1358.3377 without restraints) Performing minimization step: 1580. Total energy = 1361.8739 kcal/mol (1358.2183 without restraints) Performing minimization step: 1581. Total energy = 1361.7529 kcal/mol (1358.0990 without restraints) Performing minimization step: 1582. Total energy = 1361.6320 kcal/mol (1357.9797 without restraints) Performing minimization step: 1583. Total energy = 1361.5113 kcal/mol (1357.8607 without restraints) Performing minimization step: 1584. Total energy = 1361.3902 kcal/mol (1357.7412 without restraints) Performing minimization step: 1585. Total energy = 1361.2696 kcal/mol (1357.6222 without restraints) Performing minimization step: 1586. Total energy = 1361.1490 kcal/mol (1357.5033 without restraints) Performing minimization step: 1587. Total energy = 1361.0287 kcal/mol (1357.3848 without restraints) Performing minimization step: 1588. Total energy = 1360.9086 kcal/mol (1357.2663 without restraints) Performing minimization step: 1589. Total energy = 1360.7888 kcal/mol (1357.1481 without restraints) Performing minimization step: 1590. Total energy = 1360.6686 kcal/mol (1357.0296 without restraints) Performing minimization step: 1591. Total energy = 1360.5484 kcal/mol (1356.9110 without restraints) Performing minimization step: 1592. Total energy = 1360.4282 kcal/mol (1356.7925 without restraints) Performing minimization step: 1593. Total energy = 1360.3082 kcal/mol (1356.6740 without restraints) Performing minimization step: 1594. Total energy = 1360.1885 kcal/mol (1356.5561 without restraints) Performing minimization step: 1595. Total energy = 1360.0684 kcal/mol (1356.4376 without restraints) Performing minimization step: 1596. Total energy = 1359.9485 kcal/mol (1356.3194 without restraints) Performing minimization step: 1597. Total energy = 1359.8290 kcal/mol (1356.2014 without restraints) Performing minimization step: 1598. Total energy = 1359.7095 kcal/mol (1356.0836 without restraints) Performing minimization step: 1599. Total energy = 1359.5900 kcal/mol (1355.9657 without restraints) Performing minimization step: 1600. Total energy = 1359.4706 kcal/mol (1355.8480 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 1359.3513 kcal/mol (1355.7303 without restraints) Performing minimization step: 1602. Total energy = 1359.2319 kcal/mol (1355.6125 without restraints) Performing minimization step: 1603. Total energy = 1359.1128 kcal/mol (1355.4950 without restraints) Performing minimization step: 1604. Total energy = 1358.9937 kcal/mol (1355.3776 without restraints) Performing minimization step: 1605. Total energy = 1358.8744 kcal/mol (1355.2599 without restraints) Performing minimization step: 1606. Total energy = 1358.7554 kcal/mol (1355.1424 without restraints) Performing minimization step: 1607. Total energy = 1358.6364 kcal/mol (1355.0251 without restraints) Performing minimization step: 1608. Total energy = 1358.5176 kcal/mol (1354.9079 without restraints) Performing minimization step: 1609. Total energy = 1358.3989 kcal/mol (1354.7909 without restraints) Performing minimization step: 1610. Total energy = 1358.2802 kcal/mol (1354.6738 without restraints) Performing minimization step: 1611. Total energy = 1358.1614 kcal/mol (1354.5566 without restraints) Performing minimization step: 1612. Total energy = 1358.0429 kcal/mol (1354.4398 without restraints) Performing minimization step: 1613. Total energy = 1357.9244 kcal/mol (1354.3228 without restraints) Performing minimization step: 1614. Total energy = 1357.8058 kcal/mol (1354.2059 without restraints) Performing minimization step: 1615. Total energy = 1357.6874 kcal/mol (1354.0890 without restraints) Performing minimization step: 1616. Total energy = 1357.5689 kcal/mol (1353.9722 without restraints) Performing minimization step: 1617. Total energy = 1357.4507 kcal/mol (1353.8556 without restraints) Performing minimization step: 1618. Total energy = 1357.3323 kcal/mol (1353.7387 without restraints) Performing minimization step: 1619. Total energy = 1357.2143 kcal/mol (1353.6224 without restraints) Performing minimization step: 1620. Total energy = 1357.0963 kcal/mol (1353.5061 without restraints) Performing minimization step: 1621. Total energy = 1356.9786 kcal/mol (1353.3900 without restraints) Performing minimization step: 1622. Total energy = 1356.8607 kcal/mol (1353.2736 without restraints) Performing minimization step: 1623. Total energy = 1356.7432 kcal/mol (1353.1578 without restraints) Performing minimization step: 1624. Total energy = 1356.6255 kcal/mol (1353.0415 without restraints) Performing minimization step: 1625. Total energy = 1356.5079 kcal/mol (1352.9257 without restraints) Performing minimization step: 1626. Total energy = 1356.3901 kcal/mol (1352.8094 without restraints) Performing minimization step: 1627. Total energy = 1356.2727 kcal/mol (1352.6936 without restraints) Performing minimization step: 1628. Total energy = 1356.1554 kcal/mol (1352.5779 without restraints) Performing minimization step: 1629. Total energy = 1356.0382 kcal/mol (1352.4623 without restraints) Performing minimization step: 1630. Total energy = 1355.9210 kcal/mol (1352.3467 without restraints) Performing minimization step: 1631. Total energy = 1355.8040 kcal/mol (1352.2315 without restraints) Performing minimization step: 1632. Total energy = 1355.6872 kcal/mol (1352.1161 without restraints) Performing minimization step: 1633. Total energy = 1355.5698 kcal/mol (1352.0001 without restraints) Performing minimization step: 1634. Total energy = 1355.4528 kcal/mol (1351.8848 without restraints) Performing minimization step: 1635. Total energy = 1355.3360 kcal/mol (1351.7698 without restraints) Performing minimization step: 1636. Total energy = 1355.2194 kcal/mol (1351.6545 without restraints) Performing minimization step: 1637. Total energy = 1355.1027 kcal/mol (1351.5396 without restraints) Performing minimization step: 1638. Total energy = 1354.9862 kcal/mol (1351.4246 without restraints) Performing minimization step: 1639. Total energy = 1354.8697 kcal/mol (1351.3096 without restraints) Performing minimization step: 1640. Total energy = 1354.7532 kcal/mol (1351.1947 without restraints) Performing minimization step: 1641. Total energy = 1354.6367 kcal/mol (1351.0799 without restraints) Performing minimization step: 1642. Total energy = 1354.5203 kcal/mol (1350.9650 without restraints) Performing minimization step: 1643. Total energy = 1354.4040 kcal/mol (1350.8503 without restraints) Performing minimization step: 1644. Total energy = 1354.2876 kcal/mol (1350.7355 without restraints) Performing minimization step: 1645. Total energy = 1354.1714 kcal/mol (1350.6209 without restraints) Performing minimization step: 1646. Total energy = 1354.0553 kcal/mol (1350.5063 without restraints) Performing minimization step: 1647. Total energy = 1353.9391 kcal/mol (1350.3917 without restraints) Performing minimization step: 1648. Total energy = 1353.8229 kcal/mol (1350.2770 without restraints) Performing minimization step: 1649. Total energy = 1353.7072 kcal/mol (1350.1630 without restraints) Performing minimization step: 1650. Total energy = 1353.5917 kcal/mol (1350.0490 without restraints) Performing minimization step: 1651. Total energy = 1353.4762 kcal/mol (1349.9350 without restraints) Performing minimization step: 1652. Total energy = 1353.3603 kcal/mol (1349.8207 without restraints) Performing minimization step: 1653. Total energy = 1353.2446 kcal/mol (1349.7066 without restraints) Performing minimization step: 1654. Total energy = 1353.1291 kcal/mol (1349.5926 without restraints) Performing minimization step: 1655. Total energy = 1353.0135 kcal/mol (1349.4786 without restraints) Performing minimization step: 1656. Total energy = 1352.8983 kcal/mol (1349.3649 without restraints) Performing minimization step: 1657. Total energy = 1352.7830 kcal/mol (1349.2512 without restraints) Performing minimization step: 1658. Total energy = 1352.6677 kcal/mol (1349.1374 without restraints) Performing minimization step: 1659. Total energy = 1352.5525 kcal/mol (1349.0238 without restraints) Performing minimization step: 1660. Total energy = 1352.4374 kcal/mol (1348.9102 without restraints) Performing minimization step: 1661. Total energy = 1352.3226 kcal/mol (1348.7969 without restraints) Performing minimization step: 1662. Total energy = 1352.2076 kcal/mol (1348.6835 without restraints) Performing minimization step: 1663. Total energy = 1352.0925 kcal/mol (1348.5699 without restraints) Performing minimization step: 1664. Total energy = 1351.9778 kcal/mol (1348.4568 without restraints) Performing minimization step: 1665. Total energy = 1351.8628 kcal/mol (1348.3434 without restraints) Performing minimization step: 1666. Total energy = 1351.7480 kcal/mol (1348.2301 without restraints) Performing minimization step: 1667. Total energy = 1351.6332 kcal/mol (1348.1168 without restraints) Performing minimization step: 1668. Total energy = 1351.5185 kcal/mol (1348.0037 without restraints) Performing minimization step: 1669. Total energy = 1351.4040 kcal/mol (1347.8907 without restraints) Performing minimization step: 1670. Total energy = 1351.2896 kcal/mol (1347.7778 without restraints) Performing minimization step: 1671. Total energy = 1351.1749 kcal/mol (1347.6647 without restraints) Performing minimization step: 1672. Total energy = 1351.0605 kcal/mol (1347.5518 without restraints) Performing minimization step: 1673. Total energy = 1350.9460 kcal/mol (1347.4389 without restraints) Performing minimization step: 1674. Total energy = 1350.8318 kcal/mol (1347.3262 without restraints) Performing minimization step: 1675. Total energy = 1350.7174 kcal/mol (1347.2133 without restraints) Performing minimization step: 1676. Total energy = 1350.6037 kcal/mol (1347.1011 without restraints) Performing minimization step: 1677. Total energy = 1350.4895 kcal/mol (1346.9885 without restraints) Performing minimization step: 1678. Total energy = 1350.3758 kcal/mol (1346.8763 without restraints) Performing minimization step: 1679. Total energy = 1350.2619 kcal/mol (1346.7640 without restraints) Performing minimization step: 1680. Total energy = 1350.1479 kcal/mol (1346.6513 without restraints) Performing minimization step: 1681. Total energy = 1350.0338 kcal/mol (1346.5388 without restraints) Performing minimization step: 1682. Total energy = 1349.9199 kcal/mol (1346.4265 without restraints) Performing minimization step: 1683. Total energy = 1349.8061 kcal/mol (1346.3141 without restraints) Performing minimization step: 1684. Total energy = 1349.6924 kcal/mol (1346.2021 without restraints) Performing minimization step: 1685. Total energy = 1349.5789 kcal/mol (1346.0901 without restraints) Performing minimization step: 1686. Total energy = 1349.4655 kcal/mol (1345.9782 without restraints) Performing minimization step: 1687. Total energy = 1349.3522 kcal/mol (1345.8664 without restraints) Performing minimization step: 1688. Total energy = 1349.2390 kcal/mol (1345.7547 without restraints) Performing minimization step: 1689. Total energy = 1349.1254 kcal/mol (1345.6425 without restraints) Performing minimization step: 1690. Total energy = 1349.0117 kcal/mol (1345.5305 without restraints) Performing minimization step: 1691. Total energy = 1348.8983 kcal/mol (1345.4184 without restraints) Performing minimization step: 1692. Total energy = 1348.7849 kcal/mol (1345.3067 without restraints) Performing minimization step: 1693. Total energy = 1348.6719 kcal/mol (1345.1952 without restraints) Performing minimization step: 1694. Total energy = 1348.5591 kcal/mol (1345.0839 without restraints) Performing minimization step: 1695. Total energy = 1348.4463 kcal/mol (1344.9726 without restraints) Performing minimization step: 1696. Total energy = 1348.3335 kcal/mol (1344.8613 without restraints) Performing minimization step: 1697. Total energy = 1348.2204 kcal/mol (1344.7495 without restraints) Performing minimization step: 1698. Total energy = 1348.1073 kcal/mol (1344.6381 without restraints) Performing minimization step: 1699. Total energy = 1347.9947 kcal/mol (1344.5270 without restraints) Performing minimization step: 1700. Total energy = 1347.8819 kcal/mol (1344.4157 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 1347.7696 kcal/mol (1344.3049 without restraints) Performing minimization step: 1702. Total energy = 1347.6569 kcal/mol (1344.1937 without restraints) Performing minimization step: 1703. Total energy = 1347.5444 kcal/mol (1344.0826 without restraints) Performing minimization step: 1704. Total energy = 1347.4322 kcal/mol (1343.9720 without restraints) Performing minimization step: 1705. Total energy = 1347.3197 kcal/mol (1343.8610 without restraints) Performing minimization step: 1706. Total energy = 1347.2075 kcal/mol (1343.7503 without restraints) Performing minimization step: 1707. Total energy = 1347.0954 kcal/mol (1343.6396 without restraints) Performing minimization step: 1708. Total energy = 1346.9833 kcal/mol (1343.5290 without restraints) Performing minimization step: 1709. Total energy = 1346.8715 kcal/mol (1343.4187 without restraints) Performing minimization step: 1710. Total energy = 1346.7596 kcal/mol (1343.3083 without restraints) Performing minimization step: 1711. Total energy = 1346.6476 kcal/mol (1343.1978 without restraints) Performing minimization step: 1712. Total energy = 1346.5356 kcal/mol (1343.0872 without restraints) Performing minimization step: 1713. Total energy = 1346.4236 kcal/mol (1342.9767 without restraints) Performing minimization step: 1714. Total energy = 1346.3116 kcal/mol (1342.8662 without restraints) Performing minimization step: 1715. Total energy = 1346.1999 kcal/mol (1342.7561 without restraints) Performing minimization step: 1716. Total energy = 1346.0884 kcal/mol (1342.6460 without restraints) Performing minimization step: 1717. Total energy = 1345.9768 kcal/mol (1342.5359 without restraints) Performing minimization step: 1718. Total energy = 1345.8653 kcal/mol (1342.4258 without restraints) Performing minimization step: 1719. Total energy = 1345.7538 kcal/mol (1342.3159 without restraints) Performing minimization step: 1720. Total energy = 1345.6425 kcal/mol (1342.2060 without restraints) Performing minimization step: 1721. Total energy = 1345.5310 kcal/mol (1342.0959 without restraints) Performing minimization step: 1722. Total energy = 1345.4197 kcal/mol (1341.9862 without restraints) Performing minimization step: 1723. Total energy = 1345.3085 kcal/mol (1341.8765 without restraints) Performing minimization step: 1724. Total energy = 1345.1974 kcal/mol (1341.7668 without restraints) Performing minimization step: 1725. Total energy = 1345.0864 kcal/mol (1341.6572 without restraints) Performing minimization step: 1726. Total energy = 1344.9754 kcal/mol (1341.5477 without restraints) Performing minimization step: 1727. Total energy = 1344.8641 kcal/mol (1341.4378 without restraints) Performing minimization step: 1728. Total energy = 1344.7534 kcal/mol (1341.3286 without restraints) Performing minimization step: 1729. Total energy = 1344.6426 kcal/mol (1341.2193 without restraints) Performing minimization step: 1730. Total energy = 1344.5318 kcal/mol (1341.1099 without restraints) Performing minimization step: 1731. Total energy = 1344.4210 kcal/mol (1341.0007 without restraints) Performing minimization step: 1732. Total energy = 1344.3102 kcal/mol (1340.8913 without restraints) Performing minimization step: 1733. Total energy = 1344.1993 kcal/mol (1340.7819 without restraints) Performing minimization step: 1734. Total energy = 1344.0890 kcal/mol (1340.6730 without restraints) Performing minimization step: 1735. Total energy = 1343.9785 kcal/mol (1340.5640 without restraints) Performing minimization step: 1736. Total energy = 1343.8677 kcal/mol (1340.4545 without restraints) Performing minimization step: 1737. Total energy = 1343.7572 kcal/mol (1340.3456 without restraints) Performing minimization step: 1738. Total energy = 1343.6469 kcal/mol (1340.2367 without restraints) Performing minimization step: 1739. Total energy = 1343.5367 kcal/mol (1340.1281 without restraints) Performing minimization step: 1740. Total energy = 1343.4266 kcal/mol (1340.0193 without restraints) Performing minimization step: 1741. Total energy = 1343.3166 kcal/mol (1339.9107 without restraints) Performing minimization step: 1742. Total energy = 1343.2062 kcal/mol (1339.8018 without restraints) Performing minimization step: 1743. Total energy = 1343.0962 kcal/mol (1339.6933 without restraints) Performing minimization step: 1744. Total energy = 1342.9863 kcal/mol (1339.5848 without restraints) Performing minimization step: 1745. Total energy = 1342.8761 kcal/mol (1339.4760 without restraints) Performing minimization step: 1746. Total energy = 1342.7662 kcal/mol (1339.3676 without restraints) Performing minimization step: 1747. Total energy = 1342.6562 kcal/mol (1339.2590 without restraints) Performing minimization step: 1748. Total energy = 1342.5461 kcal/mol (1339.1503 without restraints) Performing minimization step: 1749. Total energy = 1342.4362 kcal/mol (1339.0419 without restraints) Performing minimization step: 1750. Total energy = 1342.3266 kcal/mol (1338.9337 without restraints) Performing minimization step: 1751. Total energy = 1342.2168 kcal/mol (1338.8254 without restraints) Performing minimization step: 1752. Total energy = 1342.1074 kcal/mol (1338.7175 without restraints) Performing minimization step: 1753. Total energy = 1341.9979 kcal/mol (1338.6092 without restraints) Performing minimization step: 1754. Total energy = 1341.8878 kcal/mol (1338.5003 without restraints) Performing minimization step: 1755. Total energy = 1341.7779 kcal/mol (1338.3922 without restraints) Performing minimization step: 1756. Total energy = 1341.6687 kcal/mol (1338.2844 without restraints) Performing minimization step: 1757. Total energy = 1341.5596 kcal/mol (1338.1768 without restraints) Performing minimization step: 1758. Total energy = 1341.4504 kcal/mol (1338.0690 without restraints) Performing minimization step: 1759. Total energy = 1341.3411 kcal/mol (1337.9611 without restraints) Performing minimization step: 1760. Total energy = 1341.2320 kcal/mol (1337.8533 without restraints) Performing minimization step: 1761. Total energy = 1341.1230 kcal/mol (1337.7458 without restraints) Performing minimization step: 1762. Total energy = 1341.0140 kcal/mol (1337.6382 without restraints) Performing minimization step: 1763. Total energy = 1340.9051 kcal/mol (1337.5307 without restraints) Performing minimization step: 1764. Total energy = 1340.7958 kcal/mol (1337.4229 without restraints) Performing minimization step: 1765. Total energy = 1340.6870 kcal/mol (1337.3155 without restraints) Performing minimization step: 1766. Total energy = 1340.5783 kcal/mol (1337.2082 without restraints) Performing minimization step: 1767. Total energy = 1340.4696 kcal/mol (1337.1009 without restraints) Performing minimization step: 1768. Total energy = 1340.3608 kcal/mol (1336.9935 without restraints) Performing minimization step: 1769. Total energy = 1340.2520 kcal/mol (1336.8861 without restraints) Performing minimization step: 1770. Total energy = 1340.1435 kcal/mol (1336.7790 without restraints) Performing minimization step: 1771. Total energy = 1340.0350 kcal/mol (1336.6720 without restraints) Performing minimization step: 1772. Total energy = 1339.9265 kcal/mol (1336.5647 without restraints) Performing minimization step: 1773. Total energy = 1339.8183 kcal/mol (1336.4581 without restraints) Performing minimization step: 1774. Total energy = 1339.7100 kcal/mol (1336.3511 without restraints) Performing minimization step: 1775. Total energy = 1339.6018 kcal/mol (1336.2443 without restraints) Performing minimization step: 1776. Total energy = 1339.4934 kcal/mol (1336.1373 without restraints) Performing minimization step: 1777. Total energy = 1339.3850 kcal/mol (1336.0303 without restraints) Performing minimization step: 1778. Total energy = 1339.2768 kcal/mol (1335.9236 without restraints) Performing minimization step: 1779. Total energy = 1339.1689 kcal/mol (1335.8171 without restraints) Performing minimization step: 1780. Total energy = 1339.0606 kcal/mol (1335.7100 without restraints) Performing minimization step: 1781. Total energy = 1338.9523 kcal/mol (1335.6033 without restraints) Performing minimization step: 1782. Total energy = 1338.8443 kcal/mol (1335.4966 without restraints) Performing minimization step: 1783. Total energy = 1338.7362 kcal/mol (1335.3900 without restraints) Performing minimization step: 1784. Total energy = 1338.6284 kcal/mol (1335.2834 without restraints) Performing minimization step: 1785. Total energy = 1338.5206 kcal/mol (1335.1771 without restraints) Performing minimization step: 1786. Total energy = 1338.4126 kcal/mol (1335.0705 without restraints) Performing minimization step: 1787. Total energy = 1338.3049 kcal/mol (1334.9643 without restraints) Performing minimization step: 1788. Total energy = 1338.1975 kcal/mol (1334.8581 without restraints) Performing minimization step: 1789. Total energy = 1338.0898 kcal/mol (1334.7518 without restraints) Performing minimization step: 1790. Total energy = 1337.9820 kcal/mol (1334.6455 without restraints) Performing minimization step: 1791. Total energy = 1337.8746 kcal/mol (1334.5395 without restraints) Performing minimization step: 1792. Total energy = 1337.7672 kcal/mol (1334.4335 without restraints) Performing minimization step: 1793. Total energy = 1337.6599 kcal/mol (1334.3276 without restraints) Performing minimization step: 1794. Total energy = 1337.5525 kcal/mol (1334.2216 without restraints) Performing minimization step: 1795. Total energy = 1337.4452 kcal/mol (1334.1155 without restraints) Performing minimization step: 1796. Total energy = 1337.3381 kcal/mol (1334.0101 without restraints) Performing minimization step: 1797. Total energy = 1337.2309 kcal/mol (1333.9041 without restraints) Performing minimization step: 1798. Total energy = 1337.1239 kcal/mol (1333.7984 without restraints) Performing minimization step: 1799. Total energy = 1337.0169 kcal/mol (1333.6928 without restraints) Performing minimization step: 1800. Total energy = 1336.9099 kcal/mol (1333.5870 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 1336.8031 kcal/mol (1333.4818 without restraints) Performing minimization step: 1802. Total energy = 1336.6957 kcal/mol (1333.3757 without restraints) Performing minimization step: 1803. Total energy = 1336.5891 kcal/mol (1333.2705 without restraints) Performing minimization step: 1804. Total energy = 1336.4824 kcal/mol (1333.1651 without restraints) Performing minimization step: 1805. Total energy = 1336.3753 kcal/mol (1333.0594 without restraints) Performing minimization step: 1806. Total energy = 1336.2687 kcal/mol (1332.9542 without restraints) Performing minimization step: 1807. Total energy = 1336.1621 kcal/mol (1332.8490 without restraints) Performing minimization step: 1808. Total energy = 1336.0556 kcal/mol (1332.7438 without restraints) Performing minimization step: 1809. Total energy = 1335.9492 kcal/mol (1332.6388 without restraints) Performing minimization step: 1810. Total energy = 1335.8426 kcal/mol (1332.5336 without restraints) Performing minimization step: 1811. Total energy = 1335.7364 kcal/mol (1332.4286 without restraints) Performing minimization step: 1812. Total energy = 1335.6300 kcal/mol (1332.3236 without restraints) Performing minimization step: 1813. Total energy = 1335.5237 kcal/mol (1332.2188 without restraints) Performing minimization step: 1814. Total energy = 1335.4173 kcal/mol (1332.1137 without restraints) Performing minimization step: 1815. Total energy = 1335.3112 kcal/mol (1332.0089 without restraints) Performing minimization step: 1816. Total energy = 1335.2050 kcal/mol (1331.9041 without restraints) Performing minimization step: 1817. Total energy = 1335.0989 kcal/mol (1331.7994 without restraints) Performing minimization step: 1818. Total energy = 1334.9927 kcal/mol (1331.6945 without restraints) Performing minimization step: 1819. Total energy = 1334.8866 kcal/mol (1331.5897 without restraints) Performing minimization step: 1820. Total energy = 1334.7806 kcal/mol (1331.4852 without restraints) Performing minimization step: 1821. Total energy = 1334.6748 kcal/mol (1331.3807 without restraints) Performing minimization step: 1822. Total energy = 1334.5688 kcal/mol (1331.2760 without restraints) Performing minimization step: 1823. Total energy = 1334.4630 kcal/mol (1331.1716 without restraints) Performing minimization step: 1824. Total energy = 1334.3573 kcal/mol (1331.0672 without restraints) Performing minimization step: 1825. Total energy = 1334.2516 kcal/mol (1330.9627 without restraints) Performing minimization step: 1826. Total energy = 1334.1458 kcal/mol (1330.8583 without restraints) Performing minimization step: 1827. Total energy = 1334.0401 kcal/mol (1330.7541 without restraints) Performing minimization step: 1828. Total energy = 1333.9346 kcal/mol (1330.6499 without restraints) Performing minimization step: 1829. Total energy = 1333.8290 kcal/mol (1330.5456 without restraints) Performing minimization step: 1830. Total energy = 1333.7235 kcal/mol (1330.4415 without restraints) Performing minimization step: 1831. Total energy = 1333.6180 kcal/mol (1330.3373 without restraints) Performing minimization step: 1832. Total energy = 1333.5125 kcal/mol (1330.2331 without restraints) Performing minimization step: 1833. Total energy = 1333.4071 kcal/mol (1330.1290 without restraints) Performing minimization step: 1834. Total energy = 1333.3018 kcal/mol (1330.0252 without restraints) Performing minimization step: 1835. Total energy = 1333.1969 kcal/mol (1329.9216 without restraints) Performing minimization step: 1836. Total energy = 1333.0916 kcal/mol (1329.8176 without restraints) Performing minimization step: 1837. Total energy = 1332.9862 kcal/mol (1329.7136 without restraints) Performing minimization step: 1838. Total energy = 1332.8813 kcal/mol (1329.6099 without restraints) Performing minimization step: 1839. Total energy = 1332.7761 kcal/mol (1329.5060 without restraints) Performing minimization step: 1840. Total energy = 1332.6712 kcal/mol (1329.4024 without restraints) Performing minimization step: 1841. Total energy = 1332.5663 kcal/mol (1329.2989 without restraints) Performing minimization step: 1842. Total energy = 1332.4615 kcal/mol (1329.1954 without restraints) Performing minimization step: 1843. Total energy = 1332.3568 kcal/mol (1329.0920 without restraints) Performing minimization step: 1844. Total energy = 1332.2518 kcal/mol (1328.9884 without restraints) Performing minimization step: 1845. Total energy = 1332.1472 kcal/mol (1328.8851 without restraints) Performing minimization step: 1846. Total energy = 1332.0424 kcal/mol (1328.7816 without restraints) Performing minimization step: 1847. Total energy = 1331.9376 kcal/mol (1328.6781 without restraints) Performing minimization step: 1848. Total energy = 1331.8331 kcal/mol (1328.5749 without restraints) Performing minimization step: 1849. Total energy = 1331.7284 kcal/mol (1328.4715 without restraints) Performing minimization step: 1850. Total energy = 1331.6241 kcal/mol (1328.3688 without restraints) Performing minimization step: 1851. Total energy = 1331.5189 kcal/mol (1328.2647 without restraints) Performing minimization step: 1852. Total energy = 1331.4144 kcal/mol (1328.1615 without restraints) Performing minimization step: 1853. Total energy = 1331.3101 kcal/mol (1328.0585 without restraints) Performing minimization step: 1854. Total energy = 1331.2057 kcal/mol (1327.9554 without restraints) Performing minimization step: 1855. Total energy = 1331.1017 kcal/mol (1327.8527 without restraints) Performing minimization step: 1856. Total energy = 1330.9973 kcal/mol (1327.7497 without restraints) Performing minimization step: 1857. Total energy = 1330.8931 kcal/mol (1327.6467 without restraints) Performing minimization step: 1858. Total energy = 1330.7890 kcal/mol (1327.5439 without restraints) Performing minimization step: 1859. Total energy = 1330.6851 kcal/mol (1327.4414 without restraints) Performing minimization step: 1860. Total energy = 1330.5812 kcal/mol (1327.3387 without restraints) Performing minimization step: 1861. Total energy = 1330.4772 kcal/mol (1327.2359 without restraints) Performing minimization step: 1862. Total energy = 1330.3732 kcal/mol (1327.1334 without restraints) Performing minimization step: 1863. Total energy = 1330.2696 kcal/mol (1327.0310 without restraints) Performing minimization step: 1864. Total energy = 1330.1658 kcal/mol (1326.9286 without restraints) Performing minimization step: 1865. Total energy = 1330.0620 kcal/mol (1326.8260 without restraints) Performing minimization step: 1866. Total energy = 1329.9580 kcal/mol (1326.7234 without restraints) Performing minimization step: 1867. Total energy = 1329.8542 kcal/mol (1326.6207 without restraints) Performing minimization step: 1868. Total energy = 1329.7505 kcal/mol (1326.5184 without restraints) Performing minimization step: 1869. Total energy = 1329.6469 kcal/mol (1326.4162 without restraints) Performing minimization step: 1870. Total energy = 1329.5432 kcal/mol (1326.3137 without restraints) Performing minimization step: 1871. Total energy = 1329.4404 kcal/mol (1326.2122 without restraints) Performing minimization step: 1872. Total energy = 1329.3367 kcal/mol (1326.1098 without restraints) Performing minimization step: 1873. Total energy = 1329.2330 kcal/mol (1326.0071 without restraints) Performing minimization step: 1874. Total energy = 1329.1294 kcal/mol (1325.9051 without restraints) Performing minimization step: 1875. Total energy = 1329.0262 kcal/mol (1325.8031 without restraints) Performing minimization step: 1876. Total energy = 1328.9232 kcal/mol (1325.7015 without restraints) Performing minimization step: 1877. Total energy = 1328.8194 kcal/mol (1325.5989 without restraints) Performing minimization step: 1878. Total energy = 1328.7165 kcal/mol (1325.4973 without restraints) Performing minimization step: 1879. Total energy = 1328.6134 kcal/mol (1325.3955 without restraints) Performing minimization step: 1880. Total energy = 1328.5107 kcal/mol (1325.2940 without restraints) Performing minimization step: 1881. Total energy = 1328.4075 kcal/mol (1325.1919 without restraints) Performing minimization step: 1882. Total energy = 1328.3043 kcal/mol (1325.0903 without restraints) Performing minimization step: 1883. Total energy = 1328.2010 kcal/mol (1324.9883 without restraints) Performing minimization step: 1884. Total energy = 1328.0978 kcal/mol (1324.8863 without restraints) Performing minimization step: 1885. Total energy = 1327.9949 kcal/mol (1324.7847 without restraints) Performing minimization step: 1886. Total energy = 1327.8923 kcal/mol (1324.6834 without restraints) Performing minimization step: 1887. Total energy = 1327.7895 kcal/mol (1324.5818 without restraints) Performing minimization step: 1888. Total energy = 1327.6867 kcal/mol (1324.4803 without restraints) Performing minimization step: 1889. Total energy = 1327.5841 kcal/mol (1324.3790 without restraints) Performing minimization step: 1890. Total energy = 1327.4813 kcal/mol (1324.2774 without restraints) Performing minimization step: 1891. Total energy = 1327.3786 kcal/mol (1324.1760 without restraints) Performing minimization step: 1892. Total energy = 1327.2761 kcal/mol (1324.0747 without restraints) Performing minimization step: 1893. Total energy = 1327.1736 kcal/mol (1323.9735 without restraints) Performing minimization step: 1894. Total energy = 1327.0712 kcal/mol (1323.8723 without restraints) Performing minimization step: 1895. Total energy = 1326.9687 kcal/mol (1323.7710 without restraints) Performing minimization step: 1896. Total energy = 1326.8660 kcal/mol (1323.6697 without restraints) Performing minimization step: 1897. Total energy = 1326.7636 kcal/mol (1323.5684 without restraints) Performing minimization step: 1898. Total energy = 1326.6612 kcal/mol (1323.4675 without restraints) Performing minimization step: 1899. Total energy = 1326.5583 kcal/mol (1323.3658 without restraints) Performing minimization step: 1900. Total energy = 1326.4562 kcal/mol (1323.2649 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 1326.3541 kcal/mol (1323.1641 without restraints) Performing minimization step: 1902. Total energy = 1326.2522 kcal/mol (1323.0635 without restraints) Performing minimization step: 1903. Total energy = 1326.1500 kcal/mol (1322.9625 without restraints) Performing minimization step: 1904. Total energy = 1326.0480 kcal/mol (1322.8619 without restraints) Performing minimization step: 1905. Total energy = 1325.9461 kcal/mol (1322.7610 without restraints) Performing minimization step: 1906. Total energy = 1325.8442 kcal/mol (1322.6606 without restraints) Performing minimization step: 1907. Total energy = 1325.7422 kcal/mol (1322.5598 without restraints) Performing minimization step: 1908. Total energy = 1325.6402 kcal/mol (1322.4590 without restraints) Performing minimization step: 1909. Total energy = 1325.5382 kcal/mol (1322.3583 without restraints) Performing minimization step: 1910. Total energy = 1325.4363 kcal/mol (1322.2575 without restraints) Performing minimization step: 1911. Total energy = 1325.3345 kcal/mol (1322.1571 without restraints) Performing minimization step: 1912. Total energy = 1325.2330 kcal/mol (1322.0569 without restraints) Performing minimization step: 1913. Total energy = 1325.1309 kcal/mol (1321.9559 without restraints) Performing minimization step: 1914. Total energy = 1325.0294 kcal/mol (1321.8556 without restraints) Performing minimization step: 1915. Total energy = 1324.9282 kcal/mol (1321.7557 without restraints) Performing minimization step: 1916. Total energy = 1324.8267 kcal/mol (1321.6554 without restraints) Performing minimization step: 1917. Total energy = 1324.7253 kcal/mol (1321.5552 without restraints) Performing minimization step: 1918. Total energy = 1324.6236 kcal/mol (1321.4548 without restraints) Performing minimization step: 1919. Total energy = 1324.5223 kcal/mol (1321.3547 without restraints) Performing minimization step: 1920. Total energy = 1324.4210 kcal/mol (1321.2547 without restraints) Performing minimization step: 1921. Total energy = 1324.3197 kcal/mol (1321.1546 without restraints) Performing minimization step: 1922. Total energy = 1324.2180 kcal/mol (1321.0542 without restraints) Performing minimization step: 1923. Total energy = 1324.1170 kcal/mol (1320.9544 without restraints) Performing minimization step: 1924. Total energy = 1324.0158 kcal/mol (1320.8545 without restraints) Performing minimization step: 1925. Total energy = 1323.9150 kcal/mol (1320.7548 without restraints) Performing minimization step: 1926. Total energy = 1323.8139 kcal/mol (1320.6550 without restraints) Performing minimization step: 1927. Total energy = 1323.7128 kcal/mol (1320.5551 without restraints) Performing minimization step: 1928. Total energy = 1323.6116 kcal/mol (1320.4552 without restraints) Performing minimization step: 1929. Total energy = 1323.5107 kcal/mol (1320.3555 without restraints) Performing minimization step: 1930. Total energy = 1323.4095 kcal/mol (1320.2555 without restraints) Performing minimization step: 1931. Total energy = 1323.3087 kcal/mol (1320.1559 without restraints) Performing minimization step: 1932. Total energy = 1323.2079 kcal/mol (1320.0563 without restraints) Performing minimization step: 1933. Total energy = 1323.1070 kcal/mol (1319.9567 without restraints) Performing minimization step: 1934. Total energy = 1323.0063 kcal/mol (1319.8572 without restraints) Performing minimization step: 1935. Total energy = 1322.9056 kcal/mol (1319.7577 without restraints) Performing minimization step: 1936. Total energy = 1322.8052 kcal/mol (1319.6585 without restraints) Performing minimization step: 1937. Total energy = 1322.7046 kcal/mol (1319.5591 without restraints) Performing minimization step: 1938. Total energy = 1322.6039 kcal/mol (1319.4597 without restraints) Performing minimization step: 1939. Total energy = 1322.5034 kcal/mol (1319.3604 without restraints) Performing minimization step: 1940. Total energy = 1322.4032 kcal/mol (1319.2615 without restraints) Performing minimization step: 1941. Total energy = 1322.3025 kcal/mol (1319.1619 without restraints) Performing minimization step: 1942. Total energy = 1322.2020 kcal/mol (1319.0626 without restraints) Performing minimization step: 1943. Total energy = 1322.1014 kcal/mol (1318.9632 without restraints) Performing minimization step: 1944. Total energy = 1322.0011 kcal/mol (1318.8641 without restraints) Performing minimization step: 1945. Total energy = 1321.9008 kcal/mol (1318.7650 without restraints) Performing minimization step: 1946. Total energy = 1321.8002 kcal/mol (1318.6655 without restraints) Performing minimization step: 1947. Total energy = 1321.6996 kcal/mol (1318.5663 without restraints) Performing minimization step: 1948. Total energy = 1321.5993 kcal/mol (1318.4671 without restraints) Performing minimization step: 1949. Total energy = 1321.4991 kcal/mol (1318.3682 without restraints) Performing minimization step: 1950. Total energy = 1321.3990 kcal/mol (1318.2693 without restraints) Performing minimization step: 1951. Total energy = 1321.2990 kcal/mol (1318.1704 without restraints) Performing minimization step: 1952. Total energy = 1321.1988 kcal/mol (1318.0715 without restraints) Performing minimization step: 1953. Total energy = 1321.0988 kcal/mol (1317.9727 without restraints) Performing minimization step: 1954. Total energy = 1320.9989 kcal/mol (1317.8740 without restraints) Performing minimization step: 1955. Total energy = 1320.8993 kcal/mol (1317.7755 without restraints) Performing minimization step: 1956. Total energy = 1320.7994 kcal/mol (1317.6769 without restraints) Performing minimization step: 1957. Total energy = 1320.6994 kcal/mol (1317.5781 without restraints) Performing minimization step: 1958. Total energy = 1320.5999 kcal/mol (1317.4799 without restraints) Performing minimization step: 1959. Total energy = 1320.5005 kcal/mol (1317.3816 without restraints) Performing minimization step: 1960. Total energy = 1320.4006 kcal/mol (1317.2828 without restraints) Performing minimization step: 1961. Total energy = 1320.3007 kcal/mol (1317.1841 without restraints) Performing minimization step: 1962. Total energy = 1320.2010 kcal/mol (1317.0857 without restraints) Performing minimization step: 1963. Total energy = 1320.1013 kcal/mol (1316.9871 without restraints) Performing minimization step: 1964. Total energy = 1320.0020 kcal/mol (1316.8890 without restraints) Performing minimization step: 1965. Total energy = 1319.9023 kcal/mol (1316.7905 without restraints) Performing minimization step: 1966. Total energy = 1319.8028 kcal/mol (1316.6922 without restraints) Performing minimization step: 1967. Total energy = 1319.7034 kcal/mol (1316.5940 without restraints) Performing minimization step: 1968. Total energy = 1319.6040 kcal/mol (1316.4958 without restraints) Performing minimization step: 1969. Total energy = 1319.5046 kcal/mol (1316.3974 without restraints) Performing minimization step: 1970. Total energy = 1319.4052 kcal/mol (1316.2994 without restraints) Performing minimization step: 1971. Total energy = 1319.3062 kcal/mol (1316.2015 without restraints) Performing minimization step: 1972. Total energy = 1319.2069 kcal/mol (1316.1033 without restraints) Performing minimization step: 1973. Total energy = 1319.1078 kcal/mol (1316.0054 without restraints) Performing minimization step: 1974. Total energy = 1319.0088 kcal/mol (1315.9076 without restraints) Performing minimization step: 1975. Total energy = 1318.9094 kcal/mol (1315.8095 without restraints) Performing minimization step: 1976. Total energy = 1318.8104 kcal/mol (1315.7116 without restraints) Performing minimization step: 1977. Total energy = 1318.7117 kcal/mol (1315.6141 without restraints) Performing minimization step: 1978. Total energy = 1318.6126 kcal/mol (1315.5161 without restraints) Performing minimization step: 1979. Total energy = 1318.5138 kcal/mol (1315.4186 without restraints) Performing minimization step: 1980. Total energy = 1318.4149 kcal/mol (1315.3208 without restraints) Performing minimization step: 1981. Total energy = 1318.3161 kcal/mol (1315.2231 without restraints) Performing minimization step: 1982. Total energy = 1318.2172 kcal/mol (1315.1254 without restraints) Performing minimization step: 1983. Total energy = 1318.1179 kcal/mol (1315.0273 without restraints) Performing minimization step: 1984. Total energy = 1318.0193 kcal/mol (1314.9300 without restraints) Performing minimization step: 1985. Total energy = 1317.9207 kcal/mol (1314.8325 without restraints) Performing minimization step: 1986. Total energy = 1317.8223 kcal/mol (1314.7352 without restraints) Performing minimization step: 1987. Total energy = 1317.7234 kcal/mol (1314.6374 without restraints) Performing minimization step: 1988. Total energy = 1317.6247 kcal/mol (1314.5400 without restraints) Performing minimization step: 1989. Total energy = 1317.5262 kcal/mol (1314.4426 without restraints) Performing minimization step: 1990. Total energy = 1317.4276 kcal/mol (1314.3452 without restraints) Performing minimization step: 1991. Total energy = 1317.3290 kcal/mol (1314.2476 without restraints) Performing minimization step: 1992. Total energy = 1317.2307 kcal/mol (1314.1506 without restraints) Performing minimization step: 1993. Total energy = 1317.1318 kcal/mol (1314.0529 without restraints) Performing minimization step: 1994. Total energy = 1317.0335 kcal/mol (1313.9557 without restraints) Performing minimization step: 1995. Total energy = 1316.9351 kcal/mol (1313.8585 without restraints) Performing minimization step: 1996. Total energy = 1316.8368 kcal/mol (1313.7613 without restraints) Performing minimization step: 1997. Total energy = 1316.7382 kcal/mol (1313.6639 without restraints) Performing minimization step: 1998. Total energy = 1316.6400 kcal/mol (1313.5668 without restraints) Performing minimization step: 1999. Total energy = 1316.5418 kcal/mol (1313.4698 without restraints) Performing minimization step: 2000. Total energy = 1316.4440 kcal/mol (1313.3731 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 1316.3461 kcal/mol (1313.2764 without restraints) Performing minimization step: 2002. Total energy = 1316.2478 kcal/mol (1313.1793 without restraints) Performing minimization step: 2003. Total energy = 1316.1500 kcal/mol (1313.0826 without restraints) Performing minimization step: 2004. Total energy = 1316.0520 kcal/mol (1312.9858 without restraints) Performing minimization step: 2005. Total energy = 1315.9540 kcal/mol (1312.8888 without restraints) Performing minimization step: 2006. Total energy = 1315.8560 kcal/mol (1312.7920 without restraints) Performing minimization step: 2007. Total energy = 1315.7581 kcal/mol (1312.6952 without restraints) Performing minimization step: 2008. Total energy = 1315.6600 kcal/mol (1312.5982 without restraints) Performing minimization step: 2009. Total energy = 1315.5618 kcal/mol (1312.5012 without restraints) Performing minimization step: 2010. Total energy = 1315.4639 kcal/mol (1312.4045 without restraints) Performing minimization step: 2011. Total energy = 1315.3662 kcal/mol (1312.3079 without restraints) Performing minimization step: 2012. Total energy = 1315.2685 kcal/mol (1312.2114 without restraints) Performing minimization step: 2013. Total energy = 1315.1708 kcal/mol (1312.1148 without restraints) Performing minimization step: 2014. Total energy = 1315.0732 kcal/mol (1312.0183 without restraints) Performing minimization step: 2015. Total energy = 1314.9754 kcal/mol (1311.9217 without restraints) Performing minimization step: 2016. Total energy = 1314.8780 kcal/mol (1311.8254 without restraints) Performing minimization step: 2017. Total energy = 1314.7815 kcal/mol (1311.7301 without restraints) Performing minimization step: 2018. Total energy = 1314.6842 kcal/mol (1311.6339 without restraints) Performing minimization step: 2019. Total energy = 1314.5871 kcal/mol (1311.5378 without restraints) Performing minimization step: 2020. Total energy = 1314.4889 kcal/mol (1311.4409 without restraints) Performing minimization step: 2021. Total energy = 1314.3917 kcal/mol (1311.3448 without restraints) Performing minimization step: 2022. Total energy = 1314.2944 kcal/mol (1311.2486 without restraints) Performing minimization step: 2023. Total energy = 1314.1970 kcal/mol (1311.1524 without restraints) Performing minimization step: 2024. Total energy = 1314.0998 kcal/mol (1311.0563 without restraints) Performing minimization step: 2025. Total energy = 1314.0027 kcal/mol (1310.9603 without restraints) Performing minimization step: 2026. Total energy = 1313.9054 kcal/mol (1310.8641 without restraints) Performing minimization step: 2027. Total energy = 1313.8082 kcal/mol (1310.7681 without restraints) Performing minimization step: 2028. Total energy = 1313.7110 kcal/mol (1310.6720 without restraints) Performing minimization step: 2029. Total energy = 1313.6139 kcal/mol (1310.5760 without restraints) Performing minimization step: 2030. Total energy = 1313.5168 kcal/mol (1310.4800 without restraints) Performing minimization step: 2031. Total energy = 1313.4198 kcal/mol (1310.3841 without restraints) Performing minimization step: 2032. Total energy = 1313.3227 kcal/mol (1310.2881 without restraints) Performing minimization step: 2033. Total energy = 1313.2257 kcal/mol (1310.1923 without restraints) Performing minimization step: 2034. Total energy = 1313.1286 kcal/mol (1310.0963 without restraints) Performing minimization step: 2035. Total energy = 1313.0316 kcal/mol (1310.0003 without restraints) Performing minimization step: 2036. Total energy = 1312.9345 kcal/mol (1309.9044 without restraints) Performing minimization step: 2037. Total energy = 1312.8377 kcal/mol (1309.8087 without restraints) Performing minimization step: 2038. Total energy = 1312.7404 kcal/mol (1309.7126 without restraints) Performing minimization step: 2039. Total energy = 1312.6437 kcal/mol (1309.6170 without restraints) Performing minimization step: 2040. Total energy = 1312.5470 kcal/mol (1309.5214 without restraints) Performing minimization step: 2041. Total energy = 1312.4500 kcal/mol (1309.4255 without restraints) Performing minimization step: 2042. Total energy = 1312.3533 kcal/mol (1309.3299 without restraints) Performing minimization step: 2043. Total energy = 1312.2569 kcal/mol (1309.2346 without restraints) Performing minimization step: 2044. Total energy = 1312.1600 kcal/mol (1309.1388 without restraints) Performing minimization step: 2045. Total energy = 1312.0635 kcal/mol (1309.0434 without restraints) Performing minimization step: 2046. Total energy = 1311.9668 kcal/mol (1308.9478 without restraints) Performing minimization step: 2047. Total energy = 1311.8704 kcal/mol (1308.8525 without restraints) Performing minimization step: 2048. Total energy = 1311.7741 kcal/mol (1308.7574 without restraints) Performing minimization step: 2049. Total energy = 1311.6778 kcal/mol (1308.6621 without restraints) Performing minimization step: 2050. Total energy = 1311.5812 kcal/mol (1308.5667 without restraints) Performing minimization step: 2051. Total energy = 1311.4842 kcal/mol (1308.4707 without restraints) Performing minimization step: 2052. Total energy = 1311.3878 kcal/mol (1308.3755 without restraints) Performing minimization step: 2053. Total energy = 1311.2914 kcal/mol (1308.2801 without restraints) Performing minimization step: 2054. Total energy = 1311.1951 kcal/mol (1308.1850 without restraints) Performing minimization step: 2055. Total energy = 1311.0990 kcal/mol (1308.0899 without restraints) Performing minimization step: 2056. Total energy = 1311.0028 kcal/mol (1307.9949 without restraints) Performing minimization step: 2057. Total energy = 1310.9067 kcal/mol (1307.8999 without restraints) Performing minimization step: 2058. Total energy = 1310.8106 kcal/mol (1307.8049 without restraints) Performing minimization step: 2059. Total energy = 1310.7145 kcal/mol (1307.7099 without restraints) Performing minimization step: 2060. Total energy = 1310.6183 kcal/mol (1307.6147 without restraints) Performing minimization step: 2061. Total energy = 1310.5220 kcal/mol (1307.5195 without restraints) Performing minimization step: 2062. Total energy = 1310.4263 kcal/mol (1307.4248 without restraints) Performing minimization step: 2063. Total energy = 1310.3303 kcal/mol (1307.3300 without restraints) Performing minimization step: 2064. Total energy = 1310.2344 kcal/mol (1307.2351 without restraints) Performing minimization step: 2065. Total energy = 1310.1383 kcal/mol (1307.1402 without restraints) Performing minimization step: 2066. Total energy = 1310.0423 kcal/mol (1307.0452 without restraints) Performing minimization step: 2067. Total energy = 1309.9467 kcal/mol (1306.9508 without restraints) Performing minimization step: 2068. Total energy = 1309.8507 kcal/mol (1306.8559 without restraints) Performing minimization step: 2069. Total energy = 1309.7551 kcal/mol (1306.7613 without restraints) Performing minimization step: 2070. Total energy = 1309.6592 kcal/mol (1306.6665 without restraints) Performing minimization step: 2071. Total energy = 1309.5635 kcal/mol (1306.5718 without restraints) Performing minimization step: 2072. Total energy = 1309.4679 kcal/mol (1306.4773 without restraints) Performing minimization step: 2073. Total energy = 1309.3722 kcal/mol (1306.3826 without restraints) Performing minimization step: 2074. Total energy = 1309.2764 kcal/mol (1306.2879 without restraints) Performing minimization step: 2075. Total energy = 1309.1807 kcal/mol (1306.1934 without restraints) Performing minimization step: 2076. Total energy = 1309.0850 kcal/mol (1306.0988 without restraints) Performing minimization step: 2077. Total energy = 1308.9896 kcal/mol (1306.0045 without restraints) Performing minimization step: 2078. Total energy = 1308.8939 kcal/mol (1305.9098 without restraints) Performing minimization step: 2079. Total energy = 1308.7985 kcal/mol (1305.8155 without restraints) Performing minimization step: 2080. Total energy = 1308.7029 kcal/mol (1305.7210 without restraints) Performing minimization step: 2081. Total energy = 1308.6076 kcal/mol (1305.6267 without restraints) Performing minimization step: 2082. Total energy = 1308.5123 kcal/mol (1305.5325 without restraints) Performing minimization step: 2083. Total energy = 1308.4168 kcal/mol (1305.4381 without restraints) Performing minimization step: 2084. Total energy = 1308.3216 kcal/mol (1305.3440 without restraints) Performing minimization step: 2085. Total energy = 1308.2263 kcal/mol (1305.2497 without restraints) Performing minimization step: 2086. Total energy = 1308.1311 kcal/mol (1305.1556 without restraints) Performing minimization step: 2087. Total energy = 1308.0360 kcal/mol (1305.0616 without restraints) Performing minimization step: 2088. Total energy = 1307.9411 kcal/mol (1304.9678 without restraints) Performing minimization step: 2089. Total energy = 1307.8461 kcal/mol (1304.8738 without restraints) Performing minimization step: 2090. Total energy = 1307.7507 kcal/mol (1304.7795 without restraints) Performing minimization step: 2091. Total energy = 1307.6557 kcal/mol (1304.6855 without restraints) Performing minimization step: 2092. Total energy = 1307.5602 kcal/mol (1304.5911 without restraints) Performing minimization step: 2093. Total energy = 1307.4653 kcal/mol (1304.4973 without restraints) Performing minimization step: 2094. Total energy = 1307.3703 kcal/mol (1304.4032 without restraints) Performing minimization step: 2095. Total energy = 1307.2754 kcal/mol (1304.3094 without restraints) Performing minimization step: 2096. Total energy = 1307.1804 kcal/mol (1304.2155 without restraints) Performing minimization step: 2097. Total energy = 1307.0855 kcal/mol (1304.1217 without restraints) Performing minimization step: 2098. Total energy = 1306.9899 kcal/mol (1304.0271 without restraints) Performing minimization step: 2099. Total energy = 1306.8949 kcal/mol (1303.9332 without restraints) Performing minimization step: 2100. Total energy = 1306.8004 kcal/mol (1303.8398 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 1306.7058 kcal/mol (1303.7462 without restraints) Performing minimization step: 2102. Total energy = 1306.6111 kcal/mol (1303.6526 without restraints) Performing minimization step: 2103. Total energy = 1306.5165 kcal/mol (1303.5590 without restraints) Performing minimization step: 2104. Total energy = 1306.4218 kcal/mol (1303.4653 without restraints) Performing minimization step: 2105. Total energy = 1306.3268 kcal/mol (1303.3714 without restraints) Performing minimization step: 2106. Total energy = 1306.2318 kcal/mol (1303.2775 without restraints) Performing minimization step: 2107. Total energy = 1306.1374 kcal/mol (1303.1841 without restraints) Performing minimization step: 2108. Total energy = 1306.0425 kcal/mol (1303.0903 without restraints) Performing minimization step: 2109. Total energy = 1305.9482 kcal/mol (1302.9970 without restraints) Performing minimization step: 2110. Total energy = 1305.8538 kcal/mol (1302.9036 without restraints) Performing minimization step: 2111. Total energy = 1305.7595 kcal/mol (1302.8104 without restraints) Performing minimization step: 2112. Total energy = 1305.6650 kcal/mol (1302.7169 without restraints) Performing minimization step: 2113. Total energy = 1305.5707 kcal/mol (1302.6237 without restraints) Performing minimization step: 2114. Total energy = 1305.4765 kcal/mol (1302.5305 without restraints) Performing minimization step: 2115. Total energy = 1305.3821 kcal/mol (1302.4371 without restraints) Performing minimization step: 2116. Total energy = 1305.2881 kcal/mol (1302.3442 without restraints) Performing minimization step: 2117. Total energy = 1305.1940 kcal/mol (1302.2511 without restraints) Performing minimization step: 2118. Total energy = 1305.0997 kcal/mol (1302.1579 without restraints) Performing minimization step: 2119. Total energy = 1305.0056 kcal/mol (1302.0648 without restraints) Performing minimization step: 2120. Total energy = 1304.9116 kcal/mol (1301.9719 without restraints) Performing minimization step: 2121. Total energy = 1304.8175 kcal/mol (1301.8788 without restraints) Performing minimization step: 2122. Total energy = 1304.7237 kcal/mol (1301.7861 without restraints) Performing minimization step: 2123. Total energy = 1304.6296 kcal/mol (1301.6930 without restraints) Performing minimization step: 2124. Total energy = 1304.5351 kcal/mol (1301.5995 without restraints) Performing minimization step: 2125. Total energy = 1304.4416 kcal/mol (1301.5071 without restraints) Performing minimization step: 2126. Total energy = 1304.3474 kcal/mol (1301.4138 without restraints) Performing minimization step: 2127. Total energy = 1304.2535 kcal/mol (1301.3210 without restraints) Performing minimization step: 2128. Total energy = 1304.1597 kcal/mol (1301.2282 without restraints) Performing minimization step: 2129. Total energy = 1304.0658 kcal/mol (1301.1354 without restraints) Performing minimization step: 2130. Total energy = 1303.9721 kcal/mol (1301.0427 without restraints) Performing minimization step: 2131. Total energy = 1303.8786 kcal/mol (1300.9502 without restraints) Performing minimization step: 2132. Total energy = 1303.7850 kcal/mol (1300.8576 without restraints) Performing minimization step: 2133. Total energy = 1303.6914 kcal/mol (1300.7651 without restraints) Performing minimization step: 2134. Total energy = 1303.5978 kcal/mol (1300.6725 without restraints) Performing minimization step: 2135. Total energy = 1303.5041 kcal/mol (1300.5800 without restraints) Performing minimization step: 2136. Total energy = 1303.4103 kcal/mol (1300.4870 without restraints) Performing minimization step: 2137. Total energy = 1303.3167 kcal/mol (1300.3944 without restraints) Performing minimization step: 2138. Total energy = 1303.2231 kcal/mol (1300.3017 without restraints) Performing minimization step: 2139. Total energy = 1303.1295 kcal/mol (1300.2093 without restraints) Performing minimization step: 2140. Total energy = 1303.0361 kcal/mol (1300.1169 without restraints) Performing minimization step: 2141. Total energy = 1302.9423 kcal/mol (1300.0241 without restraints) Performing minimization step: 2142. Total energy = 1302.8491 kcal/mol (1299.9320 without restraints) Performing minimization step: 2143. Total energy = 1302.7558 kcal/mol (1299.8397 without restraints) Performing minimization step: 2144. Total energy = 1302.6626 kcal/mol (1299.7475 without restraints) Performing minimization step: 2145. Total energy = 1302.5693 kcal/mol (1299.6552 without restraints) Performing minimization step: 2146. Total energy = 1302.4757 kcal/mol (1299.5626 without restraints) Performing minimization step: 2147. Total energy = 1302.3825 kcal/mol (1299.4705 without restraints) Performing minimization step: 2148. Total energy = 1302.2893 kcal/mol (1299.3783 without restraints) Performing minimization step: 2149. Total energy = 1302.1958 kcal/mol (1299.2857 without restraints) Performing minimization step: 2150. Total energy = 1302.1022 kcal/mol (1299.1932 without restraints) Performing minimization step: 2151. Total energy = 1302.0093 kcal/mol (1299.1014 without restraints) Performing minimization step: 2152. Total energy = 1301.9164 kcal/mol (1299.0094 without restraints) Performing minimization step: 2153. Total energy = 1301.8234 kcal/mol (1298.9174 without restraints) Performing minimization step: 2154. Total energy = 1301.7305 kcal/mol (1298.8255 without restraints) Performing minimization step: 2155. Total energy = 1301.6376 kcal/mol (1298.7337 without restraints) Performing minimization step: 2156. Total energy = 1301.5448 kcal/mol (1298.6419 without restraints) Performing minimization step: 2157. Total energy = 1301.4521 kcal/mol (1298.5502 without restraints) Performing minimization step: 2158. Total energy = 1301.3593 kcal/mol (1298.4583 without restraints) Performing minimization step: 2159. Total energy = 1301.2666 kcal/mol (1298.3666 without restraints) Performing minimization step: 2160. Total energy = 1301.1736 kcal/mol (1298.2746 without restraints) Performing minimization step: 2161. Total energy = 1301.0808 kcal/mol (1298.1828 without restraints) Performing minimization step: 2162. Total energy = 1300.9881 kcal/mol (1298.0912 without restraints) Performing minimization step: 2163. Total energy = 1300.8956 kcal/mol (1297.9997 without restraints) Performing minimization step: 2164. Total energy = 1300.8030 kcal/mol (1297.9080 without restraints) Performing minimization step: 2165. Total energy = 1300.7102 kcal/mol (1297.8162 without restraints) Performing minimization step: 2166. Total energy = 1300.6176 kcal/mol (1297.7246 without restraints) Performing minimization step: 2167. Total energy = 1300.5250 kcal/mol (1297.6330 without restraints) Performing minimization step: 2168. Total energy = 1300.4325 kcal/mol (1297.5415 without restraints) Performing minimization step: 2169. Total energy = 1300.3398 kcal/mol (1297.4498 without restraints) Performing minimization step: 2170. Total energy = 1300.2476 kcal/mol (1297.3586 without restraints) Performing minimization step: 2171. Total energy = 1300.1552 kcal/mol (1297.2671 without restraints) Performing minimization step: 2172. Total energy = 1300.0628 kcal/mol (1297.1758 without restraints) Performing minimization step: 2173. Total energy = 1299.9704 kcal/mol (1297.0843 without restraints) Performing minimization step: 2174. Total energy = 1299.8780 kcal/mol (1296.9930 without restraints) Performing minimization step: 2175. Total energy = 1299.7855 kcal/mol (1296.9013 without restraints) Performing minimization step: 2176. Total energy = 1299.6930 kcal/mol (1296.8100 without restraints) Performing minimization step: 2177. Total energy = 1299.6008 kcal/mol (1296.7187 without restraints) Performing minimization step: 2178. Total energy = 1299.5082 kcal/mol (1296.6271 without restraints) Performing minimization step: 2179. Total energy = 1299.4158 kcal/mol (1296.5357 without restraints) Performing minimization step: 2180. Total energy = 1299.3236 kcal/mol (1296.4444 without restraints) Performing minimization step: 2181. Total energy = 1299.2313 kcal/mol (1296.3531 without restraints) Performing minimization step: 2182. Total energy = 1299.1392 kcal/mol (1296.2621 without restraints) Performing minimization step: 2183. Total energy = 1299.0469 kcal/mol (1296.1708 without restraints) Performing minimization step: 2184. Total energy = 1298.9548 kcal/mol (1296.0796 without restraints) Performing minimization step: 2185. Total energy = 1298.8628 kcal/mol (1295.9886 without restraints) Performing minimization step: 2186. Total energy = 1298.7710 kcal/mol (1295.8978 without restraints) Performing minimization step: 2187. Total energy = 1298.6789 kcal/mol (1295.8066 without restraints) Performing minimization step: 2188. Total energy = 1298.5870 kcal/mol (1295.7158 without restraints) Performing minimization step: 2189. Total energy = 1298.4956 kcal/mol (1295.6253 without restraints) Performing minimization step: 2190. Total energy = 1298.4039 kcal/mol (1295.5346 without restraints) Performing minimization step: 2191. Total energy = 1298.3121 kcal/mol (1295.4438 without restraints) Performing minimization step: 2192. Total energy = 1298.2201 kcal/mol (1295.3528 without restraints) Performing minimization step: 2193. Total energy = 1298.1282 kcal/mol (1295.2618 without restraints) Performing minimization step: 2194. Total energy = 1298.0368 kcal/mol (1295.1714 without restraints) Performing minimization step: 2195. Total energy = 1297.9451 kcal/mol (1295.0806 without restraints) Performing minimization step: 2196. Total energy = 1297.8532 kcal/mol (1294.9898 without restraints) Performing minimization step: 2197. Total energy = 1297.7614 kcal/mol (1294.8989 without restraints) Performing minimization step: 2198. Total energy = 1297.6698 kcal/mol (1294.8083 without restraints) Performing minimization step: 2199. Total energy = 1297.5783 kcal/mol (1294.7178 without restraints) Performing minimization step: 2200. Total energy = 1297.4866 kcal/mol (1294.6270 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 1297.3949 kcal/mol (1294.5363 without restraints) Performing minimization step: 2202. Total energy = 1297.3030 kcal/mol (1294.4453 without restraints) Performing minimization step: 2203. Total energy = 1297.2112 kcal/mol (1294.3544 without restraints) Performing minimization step: 2204. Total energy = 1297.1197 kcal/mol (1294.2640 without restraints) Performing minimization step: 2205. Total energy = 1297.0281 kcal/mol (1294.1733 without restraints) Performing minimization step: 2206. Total energy = 1296.9369 kcal/mol (1294.0831 without restraints) Performing minimization step: 2207. Total energy = 1296.8453 kcal/mol (1293.9925 without restraints) Performing minimization step: 2208. Total energy = 1296.7542 kcal/mol (1293.9025 without restraints) Performing minimization step: 2209. Total energy = 1296.6630 kcal/mol (1293.8123 without restraints) Performing minimization step: 2210. Total energy = 1296.5720 kcal/mol (1293.7221 without restraints) Performing minimization step: 2211. Total energy = 1296.4806 kcal/mol (1293.6316 without restraints) Performing minimization step: 2212. Total energy = 1296.3892 kcal/mol (1293.5412 without restraints) Performing minimization step: 2213. Total energy = 1296.2981 kcal/mol (1293.4511 without restraints) Performing minimization step: 2214. Total energy = 1296.2068 kcal/mol (1293.3605 without restraints) Performing minimization step: 2215. Total energy = 1296.1154 kcal/mol (1293.2702 without restraints) Performing minimization step: 2216. Total energy = 1296.0243 kcal/mol (1293.1801 without restraints) Performing minimization step: 2217. Total energy = 1295.9332 kcal/mol (1293.0899 without restraints) Performing minimization step: 2218. Total energy = 1295.8426 kcal/mol (1293.0003 without restraints) Performing minimization step: 2219. Total energy = 1295.7519 kcal/mol (1292.9106 without restraints) Performing minimization step: 2220. Total energy = 1295.6609 kcal/mol (1292.8205 without restraints) Performing minimization step: 2221. Total energy = 1295.5700 kcal/mol (1292.7305 without restraints) Performing minimization step: 2222. Total energy = 1295.4793 kcal/mol (1292.6408 without restraints) Performing minimization step: 2223. Total energy = 1295.3885 kcal/mol (1292.5510 without restraints) Performing minimization step: 2224. Total energy = 1295.2977 kcal/mol (1292.4612 without restraints) Performing minimization step: 2225. Total energy = 1295.2070 kcal/mol (1292.3714 without restraints) Performing minimization step: 2226. Total energy = 1295.1163 kcal/mol (1292.2816 without restraints) Performing minimization step: 2227. Total energy = 1295.0256 kcal/mol (1292.1919 without restraints) Performing minimization step: 2228. Total energy = 1294.9349 kcal/mol (1292.1022 without restraints) Performing minimization step: 2229. Total energy = 1294.8443 kcal/mol (1292.0125 without restraints) Performing minimization step: 2230. Total energy = 1294.7537 kcal/mol (1291.9228 without restraints) Performing minimization step: 2231. Total energy = 1294.6631 kcal/mol (1291.8332 without restraints) Performing minimization step: 2232. Total energy = 1294.5726 kcal/mol (1291.7436 without restraints) Performing minimization step: 2233. Total energy = 1294.4822 kcal/mol (1291.6541 without restraints) Performing minimization step: 2234. Total energy = 1294.3917 kcal/mol (1291.5646 without restraints) Performing minimization step: 2235. Total energy = 1294.3014 kcal/mol (1291.4753 without restraints) Performing minimization step: 2236. Total energy = 1294.2113 kcal/mol (1291.3863 without restraints) Performing minimization step: 2237. Total energy = 1294.1211 kcal/mol (1291.2968 without restraints) Performing minimization step: 2238. Total energy = 1294.0308 kcal/mol (1291.2074 without restraints) Performing minimization step: 2239. Total energy = 1293.9410 kcal/mol (1291.1186 without restraints) Performing minimization step: 2240. Total energy = 1293.8509 kcal/mol (1291.0295 without restraints) Performing minimization step: 2241. Total energy = 1293.7607 kcal/mol (1290.9401 without restraints) Performing minimization step: 2242. Total energy = 1293.6704 kcal/mol (1290.8508 without restraints) Performing minimization step: 2243. Total energy = 1293.5804 kcal/mol (1290.7618 without restraints) Performing minimization step: 2244. Total energy = 1293.4903 kcal/mol (1290.6726 without restraints) Performing minimization step: 2245. Total energy = 1293.4004 kcal/mol (1290.5836 without restraints) Performing minimization step: 2246. Total energy = 1293.3103 kcal/mol (1290.4945 without restraints) Performing minimization step: 2247. Total energy = 1293.2201 kcal/mol (1290.4052 without restraints) Performing minimization step: 2248. Total energy = 1293.1298 kcal/mol (1290.3158 without restraints) Performing minimization step: 2249. Total energy = 1293.0398 kcal/mol (1290.2267 without restraints) Performing minimization step: 2250. Total energy = 1292.9497 kcal/mol (1290.1375 without restraints) Performing minimization step: 2251. Total energy = 1292.8597 kcal/mol (1290.0485 without restraints) Performing minimization step: 2252. Total energy = 1292.7701 kcal/mol (1289.9598 without restraints) Performing minimization step: 2253. Total energy = 1292.6802 kcal/mol (1289.8709 without restraints) Performing minimization step: 2254. Total energy = 1292.5906 kcal/mol (1289.7822 without restraints) Performing minimization step: 2255. Total energy = 1292.5008 kcal/mol (1289.6933 without restraints) Performing minimization step: 2256. Total energy = 1292.4109 kcal/mol (1289.6043 without restraints) Performing minimization step: 2257. Total energy = 1292.3212 kcal/mol (1289.5155 without restraints) Performing minimization step: 2258. Total energy = 1292.2316 kcal/mol (1289.4269 without restraints) Performing minimization step: 2259. Total energy = 1292.1420 kcal/mol (1289.3382 without restraints) Performing minimization step: 2260. Total energy = 1292.0524 kcal/mol (1289.2495 without restraints) Performing minimization step: 2261. Total energy = 1291.9628 kcal/mol (1289.1608 without restraints) Performing minimization step: 2262. Total energy = 1291.8731 kcal/mol (1289.0719 without restraints) Performing minimization step: 2263. Total energy = 1291.7835 kcal/mol (1288.9833 without restraints) Performing minimization step: 2264. Total energy = 1291.6937 kcal/mol (1288.8945 without restraints) Performing minimization step: 2265. Total energy = 1291.6045 kcal/mol (1288.8062 without restraints) Performing minimization step: 2266. Total energy = 1291.5153 kcal/mol (1288.7179 without restraints) Performing minimization step: 2267. Total energy = 1291.4262 kcal/mol (1288.6298 without restraints) Performing minimization step: 2268. Total energy = 1291.3369 kcal/mol (1288.5413 without restraints) Performing minimization step: 2269. Total energy = 1291.2474 kcal/mol (1288.4527 without restraints) Performing minimization step: 2270. Total energy = 1291.1579 kcal/mol (1288.3642 without restraints) Performing minimization step: 2271. Total energy = 1291.0688 kcal/mol (1288.2759 without restraints) Performing minimization step: 2272. Total energy = 1290.9795 kcal/mol (1288.1876 without restraints) Performing minimization step: 2273. Total energy = 1290.8903 kcal/mol (1288.0993 without restraints) Performing minimization step: 2274. Total energy = 1290.8011 kcal/mol (1288.0110 without restraints) Performing minimization step: 2275. Total energy = 1290.7120 kcal/mol (1287.9229 without restraints) Performing minimization step: 2276. Total energy = 1290.6230 kcal/mol (1287.8347 without restraints) Performing minimization step: 2277. Total energy = 1290.5336 kcal/mol (1287.7463 without restraints) Performing minimization step: 2278. Total energy = 1290.4451 kcal/mol (1287.6588 without restraints) Performing minimization step: 2279. Total energy = 1290.3560 kcal/mol (1287.5704 without restraints) Performing minimization step: 2280. Total energy = 1290.2670 kcal/mol (1287.4824 without restraints) Performing minimization step: 2281. Total energy = 1290.1776 kcal/mol (1287.3939 without restraints) Performing minimization step: 2282. Total energy = 1290.0884 kcal/mol (1287.3056 without restraints) Performing minimization step: 2283. Total energy = 1289.9996 kcal/mol (1287.2178 without restraints) Performing minimization step: 2284. Total energy = 1289.9107 kcal/mol (1287.1297 without restraints) Performing minimization step: 2285. Total energy = 1289.8218 kcal/mol (1287.0418 without restraints) Performing minimization step: 2286. Total energy = 1289.7330 kcal/mol (1286.9539 without restraints) Performing minimization step: 2287. Total energy = 1289.6442 kcal/mol (1286.8659 without restraints) Performing minimization step: 2288. Total energy = 1289.5555 kcal/mol (1286.7781 without restraints) Performing minimization step: 2289. Total energy = 1289.4666 kcal/mol (1286.6901 without restraints) Performing minimization step: 2290. Total energy = 1289.3781 kcal/mol (1286.6025 without restraints) Performing minimization step: 2291. Total energy = 1289.2894 kcal/mol (1286.5147 without restraints) Performing minimization step: 2292. Total energy = 1289.2006 kcal/mol (1286.4268 without restraints) Performing minimization step: 2293. Total energy = 1289.1120 kcal/mol (1286.3391 without restraints) Performing minimization step: 2294. Total energy = 1289.0233 kcal/mol (1286.2513 without restraints) Performing minimization step: 2295. Total energy = 1288.9346 kcal/mol (1286.1634 without restraints) Performing minimization step: 2296. Total energy = 1288.8460 kcal/mol (1286.0759 without restraints) Performing minimization step: 2297. Total energy = 1288.7572 kcal/mol (1285.9879 without restraints) Performing minimization step: 2298. Total energy = 1288.6687 kcal/mol (1285.9002 without restraints) Performing minimization step: 2299. Total energy = 1288.5803 kcal/mol (1285.8128 without restraints) Performing minimization step: 2300. Total energy = 1288.4920 kcal/mol (1285.7254 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 1288.4036 kcal/mol (1285.6379 without restraints) Performing minimization step: 2302. Total energy = 1288.3152 kcal/mol (1285.5504 without restraints) Performing minimization step: 2303. Total energy = 1288.2270 kcal/mol (1285.4630 without restraints) Performing minimization step: 2304. Total energy = 1288.1383 kcal/mol (1285.3753 without restraints) Performing minimization step: 2305. Total energy = 1288.0498 kcal/mol (1285.2875 without restraints) Performing minimization step: 2306. Total energy = 1287.9615 kcal/mol (1285.2002 without restraints) Performing minimization step: 2307. Total energy = 1287.8731 kcal/mol (1285.1127 without restraints) Performing minimization step: 2308. Total energy = 1287.7850 kcal/mol (1285.0255 without restraints) Performing minimization step: 2309. Total energy = 1287.6967 kcal/mol (1284.9381 without restraints) Performing minimization step: 2310. Total energy = 1287.6087 kcal/mol (1284.8509 without restraints) Performing minimization step: 2311. Total energy = 1287.5204 kcal/mol (1284.7636 without restraints) Performing minimization step: 2312. Total energy = 1287.4324 kcal/mol (1284.6765 without restraints) Performing minimization step: 2313. Total energy = 1287.3445 kcal/mol (1284.5894 without restraints) Performing minimization step: 2314. Total energy = 1287.2566 kcal/mol (1284.5024 without restraints) Performing minimization step: 2315. Total energy = 1287.1687 kcal/mol (1284.4154 without restraints) Performing minimization step: 2316. Total energy = 1287.0810 kcal/mol (1284.3287 without restraints) Performing minimization step: 2317. Total energy = 1286.9927 kcal/mol (1284.2411 without restraints) Performing minimization step: 2318. Total energy = 1286.9048 kcal/mol (1284.1541 without restraints) Performing minimization step: 2319. Total energy = 1286.8170 kcal/mol (1284.0673 without restraints) Performing minimization step: 2320. Total energy = 1286.7291 kcal/mol (1283.9802 without restraints) Performing minimization step: 2321. Total energy = 1286.6414 kcal/mol (1283.8934 without restraints) Performing minimization step: 2322. Total energy = 1286.5540 kcal/mol (1283.8069 without restraints) Performing minimization step: 2323. Total energy = 1286.4665 kcal/mol (1283.7202 without restraints) Performing minimization step: 2324. Total energy = 1286.3788 kcal/mol (1283.6335 without restraints) Performing minimization step: 2325. Total energy = 1286.2913 kcal/mol (1283.5468 without restraints) Performing minimization step: 2326. Total energy = 1286.2040 kcal/mol (1283.4604 without restraints) Performing minimization step: 2327. Total energy = 1286.1167 kcal/mol (1283.3739 without restraints) Performing minimization step: 2328. Total energy = 1286.0288 kcal/mol (1283.2869 without restraints) Performing minimization step: 2329. Total energy = 1285.9413 kcal/mol (1283.2003 without restraints) Performing minimization step: 2330. Total energy = 1285.8537 kcal/mol (1283.1136 without restraints) Performing minimization step: 2331. Total energy = 1285.7662 kcal/mol (1283.0269 without restraints) Performing minimization step: 2332. Total energy = 1285.6788 kcal/mol (1282.9404 without restraints) Performing minimization step: 2333. Total energy = 1285.5916 kcal/mol (1282.8540 without restraints) Performing minimization step: 2334. Total energy = 1285.5044 kcal/mol (1282.7679 without restraints) Performing minimization step: 2335. Total energy = 1285.4171 kcal/mol (1282.6813 without restraints) Performing minimization step: 2336. Total energy = 1285.3297 kcal/mol (1282.5948 without restraints) Performing minimization step: 2337. Total energy = 1285.2426 kcal/mol (1282.5085 without restraints) Performing minimization step: 2338. Total energy = 1285.1556 kcal/mol (1282.4224 without restraints) Performing minimization step: 2339. Total energy = 1285.0683 kcal/mol (1282.3358 without restraints) Performing minimization step: 2340. Total energy = 1284.9810 kcal/mol (1282.2496 without restraints) Performing minimization step: 2341. Total energy = 1284.8939 kcal/mol (1282.1632 without restraints) Performing minimization step: 2342. Total energy = 1284.8065 kcal/mol (1282.0768 without restraints) Performing minimization step: 2343. Total energy = 1284.7195 kcal/mol (1281.9906 without restraints) Performing minimization step: 2344. Total energy = 1284.6326 kcal/mol (1281.9046 without restraints) Performing minimization step: 2345. Total energy = 1284.5457 kcal/mol (1281.8186 without restraints) Performing minimization step: 2346. Total energy = 1284.4588 kcal/mol (1281.7325 without restraints) Performing minimization step: 2347. Total energy = 1284.3720 kcal/mol (1281.6466 without restraints) Performing minimization step: 2348. Total energy = 1284.2849 kcal/mol (1281.5602 without restraints) Performing minimization step: 2349. Total energy = 1284.1980 kcal/mol (1281.4743 without restraints) Performing minimization step: 2350. Total energy = 1284.1109 kcal/mol (1281.3880 without restraints) Performing minimization step: 2351. Total energy = 1284.0240 kcal/mol (1281.3022 without restraints) Performing minimization step: 2352. Total energy = 1283.9375 kcal/mol (1281.2163 without restraints) Performing minimization step: 2353. Total energy = 1283.8508 kcal/mol (1281.1306 without restraints) Performing minimization step: 2354. Total energy = 1283.7642 kcal/mol (1281.0448 without restraints) Performing minimization step: 2355. Total energy = 1283.6777 kcal/mol (1280.9591 without restraints) Performing minimization step: 2356. Total energy = 1283.5916 kcal/mol (1280.8739 without restraints) Performing minimization step: 2357. Total energy = 1283.5051 kcal/mol (1280.7882 without restraints) Performing minimization step: 2358. Total energy = 1283.4187 kcal/mol (1280.7027 without restraints) Performing minimization step: 2359. Total energy = 1283.3322 kcal/mol (1280.6171 without restraints) Performing minimization step: 2360. Total energy = 1283.2458 kcal/mol (1280.5315 without restraints) Performing minimization step: 2361. Total energy = 1283.1595 kcal/mol (1280.4460 without restraints) Performing minimization step: 2362. Total energy = 1283.0731 kcal/mol (1280.3606 without restraints) Performing minimization step: 2363. Total energy = 1282.9867 kcal/mol (1280.2749 without restraints) Performing minimization step: 2364. Total energy = 1282.9004 kcal/mol (1280.1895 without restraints) Performing minimization step: 2365. Total energy = 1282.8140 kcal/mol (1280.1037 without restraints) Performing minimization step: 2366. Total energy = 1282.7274 kcal/mol (1280.0182 without restraints) Performing minimization step: 2367. Total energy = 1282.6412 kcal/mol (1279.9329 without restraints) Performing minimization step: 2368. Total energy = 1282.5548 kcal/mol (1279.8473 without restraints) Performing minimization step: 2369. Total energy = 1282.4687 kcal/mol (1279.7621 without restraints) Performing minimization step: 2370. Total energy = 1282.3826 kcal/mol (1279.6768 without restraints) Performing minimization step: 2371. Total energy = 1282.2964 kcal/mol (1279.5915 without restraints) Performing minimization step: 2372. Total energy = 1282.2105 kcal/mol (1279.5064 without restraints) Performing minimization step: 2373. Total energy = 1282.1248 kcal/mol (1279.4216 without restraints) Performing minimization step: 2374. Total energy = 1282.0386 kcal/mol (1279.3361 without restraints) Performing minimization step: 2375. Total energy = 1281.9526 kcal/mol (1279.2510 without restraints) Performing minimization step: 2376. Total energy = 1281.8667 kcal/mol (1279.1660 without restraints) Performing minimization step: 2377. Total energy = 1281.7807 kcal/mol (1279.0808 without restraints) Performing minimization step: 2378. Total energy = 1281.6948 kcal/mol (1278.9957 without restraints) Performing minimization step: 2379. Total energy = 1281.6090 kcal/mol (1278.9108 without restraints) Performing minimization step: 2380. Total energy = 1281.5231 kcal/mol (1278.8257 without restraints) Performing minimization step: 2381. Total energy = 1281.4374 kcal/mol (1278.7409 without restraints) Performing minimization step: 2382. Total energy = 1281.3517 kcal/mol (1278.6561 without restraints) Performing minimization step: 2383. Total energy = 1281.2661 kcal/mol (1278.5713 without restraints) Performing minimization step: 2384. Total energy = 1281.1806 kcal/mol (1278.4865 without restraints) Performing minimization step: 2385. Total energy = 1281.0950 kcal/mol (1278.4018 without restraints) Performing minimization step: 2386. Total energy = 1281.0095 kcal/mol (1278.3171 without restraints) Performing minimization step: 2387. Total energy = 1280.9238 kcal/mol (1278.2323 without restraints) Performing minimization step: 2388. Total energy = 1280.8379 kcal/mol (1278.1471 without restraints) Performing minimization step: 2389. Total energy = 1280.7521 kcal/mol (1278.0623 without restraints) Performing minimization step: 2390. Total energy = 1280.6667 kcal/mol (1277.9777 without restraints) Performing minimization step: 2391. Total energy = 1280.5814 kcal/mol (1277.8933 without restraints) Performing minimization step: 2392. Total energy = 1280.4961 kcal/mol (1277.8087 without restraints) Performing minimization step: 2393. Total energy = 1280.4108 kcal/mol (1277.7243 without restraints) Performing minimization step: 2394. Total energy = 1280.3252 kcal/mol (1277.6395 without restraints) Performing minimization step: 2395. Total energy = 1280.2401 kcal/mol (1277.5553 without restraints) Performing minimization step: 2396. Total energy = 1280.1546 kcal/mol (1277.4706 without restraints) Performing minimization step: 2397. Total energy = 1280.0695 kcal/mol (1277.3863 without restraints) Performing minimization step: 2398. Total energy = 1279.9841 kcal/mol (1277.3018 without restraints) Performing minimization step: 2399. Total energy = 1279.8988 kcal/mol (1277.2173 without restraints) Performing minimization step: 2400. Total energy = 1279.8137 kcal/mol (1277.1330 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 1279.7287 kcal/mol (1277.0488 without restraints) Performing minimization step: 2402. Total energy = 1279.6437 kcal/mol (1276.9646 without restraints) Performing minimization step: 2403. Total energy = 1279.5583 kcal/mol (1276.8801 without restraints) Performing minimization step: 2404. Total energy = 1279.4736 kcal/mol (1276.7962 without restraints) Performing minimization step: 2405. Total energy = 1279.3888 kcal/mol (1276.7124 without restraints) Performing minimization step: 2406. Total energy = 1279.3044 kcal/mol (1276.6287 without restraints) Performing minimization step: 2407. Total energy = 1279.2196 kcal/mol (1276.5447 without restraints) Performing minimization step: 2408. Total energy = 1279.1349 kcal/mol (1276.4608 without restraints) Performing minimization step: 2409. Total energy = 1279.0503 kcal/mol (1276.3771 without restraints) Performing minimization step: 2410. Total energy = 1278.9658 kcal/mol (1276.2934 without restraints) Performing minimization step: 2411. Total energy = 1278.8812 kcal/mol (1276.2096 without restraints) Performing minimization step: 2412. Total energy = 1278.7965 kcal/mol (1276.1257 without restraints) Performing minimization step: 2413. Total energy = 1278.7119 kcal/mol (1276.0420 without restraints) Performing minimization step: 2414. Total energy = 1278.6270 kcal/mol (1275.9578 without restraints) Performing minimization step: 2415. Total energy = 1278.5424 kcal/mol (1275.8741 without restraints) Performing minimization step: 2416. Total energy = 1278.4579 kcal/mol (1275.7904 without restraints) Performing minimization step: 2417. Total energy = 1278.3737 kcal/mol (1275.7070 without restraints) Performing minimization step: 2418. Total energy = 1278.2893 kcal/mol (1275.6234 without restraints) Performing minimization step: 2419. Total energy = 1278.2045 kcal/mol (1275.5394 without restraints) Performing minimization step: 2420. Total energy = 1278.1201 kcal/mol (1275.4558 without restraints) Performing minimization step: 2421. Total energy = 1278.0355 kcal/mol (1275.3721 without restraints) Performing minimization step: 2422. Total energy = 1277.9516 kcal/mol (1275.2890 without restraints) Performing minimization step: 2423. Total energy = 1277.8671 kcal/mol (1275.2053 without restraints) Performing minimization step: 2424. Total energy = 1277.7829 kcal/mol (1275.1219 without restraints) Performing minimization step: 2425. Total energy = 1277.6987 kcal/mol (1275.0385 without restraints) Performing minimization step: 2426. Total energy = 1277.6146 kcal/mol (1274.9552 without restraints) Performing minimization step: 2427. Total energy = 1277.5302 kcal/mol (1274.8717 without restraints) Performing minimization step: 2428. Total energy = 1277.4461 kcal/mol (1274.7884 without restraints) Performing minimization step: 2429. Total energy = 1277.3621 kcal/mol (1274.7052 without restraints) Performing minimization step: 2430. Total energy = 1277.2781 kcal/mol (1274.6219 without restraints) Performing minimization step: 2431. Total energy = 1277.1937 kcal/mol (1274.5384 without restraints) Performing minimization step: 2432. Total energy = 1277.1100 kcal/mol (1274.4555 without restraints) Performing minimization step: 2433. Total energy = 1277.0260 kcal/mol (1274.3723 without restraints) Performing minimization step: 2434. Total energy = 1276.9422 kcal/mol (1274.2892 without restraints) Performing minimization step: 2435. Total energy = 1276.8581 kcal/mol (1274.2060 without restraints) Performing minimization step: 2436. Total energy = 1276.7744 kcal/mol (1274.1231 without restraints) Performing minimization step: 2437. Total energy = 1276.6908 kcal/mol (1274.0403 without restraints) Performing minimization step: 2438. Total energy = 1276.6069 kcal/mol (1273.9573 without restraints) Performing minimization step: 2439. Total energy = 1276.5229 kcal/mol (1273.8740 without restraints) Performing minimization step: 2440. Total energy = 1276.4390 kcal/mol (1273.7909 without restraints) Performing minimization step: 2441. Total energy = 1276.3549 kcal/mol (1273.7075 without restraints) Performing minimization step: 2442. Total energy = 1276.2710 kcal/mol (1273.6246 without restraints) Performing minimization step: 2443. Total energy = 1276.1875 kcal/mol (1273.5419 without restraints) Performing minimization step: 2444. Total energy = 1276.1040 kcal/mol (1273.4592 without restraints) Performing minimization step: 2445. Total energy = 1276.0205 kcal/mol (1273.3764 without restraints) Performing minimization step: 2446. Total energy = 1275.9370 kcal/mol (1273.2938 without restraints) Performing minimization step: 2447. Total energy = 1275.8535 kcal/mol (1273.2110 without restraints) Performing minimization step: 2448. Total energy = 1275.7700 kcal/mol (1273.1282 without restraints) Performing minimization step: 2449. Total energy = 1275.6866 kcal/mol (1273.0457 without restraints) Performing minimization step: 2450. Total energy = 1275.6032 kcal/mol (1272.9632 without restraints) Performing minimization step: 2451. Total energy = 1275.5200 kcal/mol (1272.8807 without restraints) Performing minimization step: 2452. Total energy = 1275.4365 kcal/mol (1272.7980 without restraints) Performing minimization step: 2453. Total energy = 1275.3533 kcal/mol (1272.7156 without restraints) Performing minimization step: 2454. Total energy = 1275.2701 kcal/mol (1272.6333 without restraints) Performing minimization step: 2455. Total energy = 1275.1870 kcal/mol (1272.5509 without restraints) Performing minimization step: 2456. Total energy = 1275.1039 kcal/mol (1272.4686 without restraints) Performing minimization step: 2457. Total energy = 1275.0208 kcal/mol (1272.3863 without restraints) Performing minimization step: 2458. Total energy = 1274.9376 kcal/mol (1272.3039 without restraints) Performing minimization step: 2459. Total energy = 1274.8544 kcal/mol (1272.2215 without restraints) Performing minimization step: 2460. Total energy = 1274.7714 kcal/mol (1272.1393 without restraints) Performing minimization step: 2461. Total energy = 1274.6885 kcal/mol (1272.0572 without restraints) Performing minimization step: 2462. Total energy = 1274.6056 kcal/mol (1271.9751 without restraints) Performing minimization step: 2463. Total energy = 1274.5227 kcal/mol (1271.8930 without restraints) Performing minimization step: 2464. Total energy = 1274.4399 kcal/mol (1271.8110 without restraints) Performing minimization step: 2465. Total energy = 1274.3573 kcal/mol (1271.7291 without restraints) Performing minimization step: 2466. Total energy = 1274.2745 kcal/mol (1271.6472 without restraints) Performing minimization step: 2467. Total energy = 1274.1918 kcal/mol (1271.5652 without restraints) Performing minimization step: 2468. Total energy = 1274.1091 kcal/mol (1271.4833 without restraints) Performing minimization step: 2469. Total energy = 1274.0265 kcal/mol (1271.4015 without restraints) Performing minimization step: 2470. Total energy = 1273.9438 kcal/mol (1271.3196 without restraints) Performing minimization step: 2471. Total energy = 1273.8617 kcal/mol (1271.2383 without restraints) Performing minimization step: 2472. Total energy = 1273.7791 kcal/mol (1271.1565 without restraints) Performing minimization step: 2473. Total energy = 1273.6967 kcal/mol (1271.0748 without restraints) Performing minimization step: 2474. Total energy = 1273.6140 kcal/mol (1270.9929 without restraints) Performing minimization step: 2475. Total energy = 1273.5317 kcal/mol (1270.9115 without restraints) Performing minimization step: 2476. Total energy = 1273.4493 kcal/mol (1270.8298 without restraints) Performing minimization step: 2477. Total energy = 1273.3670 kcal/mol (1270.7483 without restraints) Performing minimization step: 2478. Total energy = 1273.2844 kcal/mol (1270.6665 without restraints) Performing minimization step: 2479. Total energy = 1273.2019 kcal/mol (1270.5846 without restraints) Performing minimization step: 2480. Total energy = 1273.1195 kcal/mol (1270.5031 without restraints) Performing minimization step: 2481. Total energy = 1273.0368 kcal/mol (1270.4211 without restraints) Performing minimization step: 2482. Total energy = 1272.9545 kcal/mol (1270.3396 without restraints) Performing minimization step: 2483. Total energy = 1272.8724 kcal/mol (1270.2583 without restraints) Performing minimization step: 2484. Total energy = 1272.7897 kcal/mol (1270.1764 without restraints) Performing minimization step: 2485. Total energy = 1272.7071 kcal/mol (1270.0946 without restraints) Performing minimization step: 2486. Total energy = 1272.6251 kcal/mol (1270.0134 without restraints) Performing minimization step: 2487. Total energy = 1272.5431 kcal/mol (1269.9322 without restraints) Performing minimization step: 2488. Total energy = 1272.4611 kcal/mol (1269.8510 without restraints) Performing minimization step: 2489. Total energy = 1272.3792 kcal/mol (1269.7698 without restraints) Performing minimization step: 2490. Total energy = 1272.2971 kcal/mol (1269.6885 without restraints) Performing minimization step: 2491. Total energy = 1272.2152 kcal/mol (1269.6073 without restraints) Performing minimization step: 2492. Total energy = 1272.1328 kcal/mol (1269.5258 without restraints) Performing minimization step: 2493. Total energy = 1272.0504 kcal/mol (1269.4442 without restraints) Performing minimization step: 2494. Total energy = 1271.9685 kcal/mol (1269.3629 without restraints) Performing minimization step: 2495. Total energy = 1271.8867 kcal/mol (1269.2820 without restraints) Performing minimization step: 2496. Total energy = 1271.8050 kcal/mol (1269.2011 without restraints) Performing minimization step: 2497. Total energy = 1271.7232 kcal/mol (1269.1200 without restraints) Performing minimization step: 2498. Total energy = 1271.6415 kcal/mol (1269.0391 without restraints) Performing minimization step: 2499. Total energy = 1271.5598 kcal/mol (1268.9580 without restraints) Performing minimization step: 2500. Total energy = 1271.4784 kcal/mol (1268.8775 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 1271.3964 kcal/mol (1268.7963 without restraints) Performing minimization step: 2502. Total energy = 1271.3144 kcal/mol (1268.7150 without restraints) Performing minimization step: 2503. Total energy = 1271.2329 kcal/mol (1268.6343 without restraints) Performing minimization step: 2504. Total energy = 1271.1515 kcal/mol (1268.5537 without restraints) Performing minimization step: 2505. Total energy = 1271.0701 kcal/mol (1268.4731 without restraints) Performing minimization step: 2506. Total energy = 1270.9887 kcal/mol (1268.3923 without restraints) Performing minimization step: 2507. Total energy = 1270.9071 kcal/mol (1268.3116 without restraints) Performing minimization step: 2508. Total energy = 1270.8264 kcal/mol (1268.2316 without restraints) Performing minimization step: 2509. Total energy = 1270.7451 kcal/mol (1268.1512 without restraints) Performing minimization step: 2510. Total energy = 1270.6642 kcal/mol (1268.0710 without restraints) Performing minimization step: 2511. Total energy = 1270.5830 kcal/mol (1267.9906 without restraints) Performing minimization step: 2512. Total energy = 1270.5019 kcal/mol (1267.9102 without restraints) Performing minimization step: 2513. Total energy = 1270.4208 kcal/mol (1267.8299 without restraints) Performing minimization step: 2514. Total energy = 1270.3396 kcal/mol (1267.7493 without restraints) Performing minimization step: 2515. Total energy = 1270.2585 kcal/mol (1267.6691 without restraints) Performing minimization step: 2516. Total energy = 1270.1775 kcal/mol (1267.5888 without restraints) Performing minimization step: 2517. Total energy = 1270.0966 kcal/mol (1267.5087 without restraints) Performing minimization step: 2518. Total energy = 1270.0156 kcal/mol (1267.4285 without restraints) Performing minimization step: 2519. Total energy = 1269.9347 kcal/mol (1267.3484 without restraints) Performing minimization step: 2520. Total energy = 1269.8535 kcal/mol (1267.2678 without restraints) Performing minimization step: 2521. Total energy = 1269.7722 kcal/mol (1267.1873 without restraints) Performing minimization step: 2522. Total energy = 1269.6913 kcal/mol (1267.1073 without restraints) Performing minimization step: 2523. Total energy = 1269.6105 kcal/mol (1267.0272 without restraints) Performing minimization step: 2524. Total energy = 1269.5296 kcal/mol (1266.9471 without restraints) Performing minimization step: 2525. Total energy = 1269.4485 kcal/mol (1266.8667 without restraints) Performing minimization step: 2526. Total energy = 1269.3679 kcal/mol (1266.7869 without restraints) Performing minimization step: 2527. Total energy = 1269.2869 kcal/mol (1266.7066 without restraints) Performing minimization step: 2528. Total energy = 1269.2061 kcal/mol (1266.6266 without restraints) Performing minimization step: 2529. Total energy = 1269.1256 kcal/mol (1266.5469 without restraints) Performing minimization step: 2530. Total energy = 1269.0451 kcal/mol (1266.4671 without restraints) Performing minimization step: 2531. Total energy = 1268.9647 kcal/mol (1266.3874 without restraints) Performing minimization step: 2532. Total energy = 1268.8842 kcal/mol (1266.3077 without restraints) Performing minimization step: 2533. Total energy = 1268.8037 kcal/mol (1266.2279 without restraints) Performing minimization step: 2534. Total energy = 1268.7233 kcal/mol (1266.1483 without restraints) Performing minimization step: 2535. Total energy = 1268.6429 kcal/mol (1266.0686 without restraints) Performing minimization step: 2536. Total energy = 1268.5626 kcal/mol (1265.9891 without restraints) Performing minimization step: 2537. Total energy = 1268.4823 kcal/mol (1265.9095 without restraints) Performing minimization step: 2538. Total energy = 1268.4016 kcal/mol (1265.8296 without restraints) Performing minimization step: 2539. Total energy = 1268.3214 kcal/mol (1265.7502 without restraints) Performing minimization step: 2540. Total energy = 1268.2406 kcal/mol (1265.6701 without restraints) Performing minimization step: 2541. Total energy = 1268.1602 kcal/mol (1265.5903 without restraints) Performing minimization step: 2542. Total energy = 1268.0797 kcal/mol (1265.5107 without restraints) Performing minimization step: 2543. Total energy = 1267.9997 kcal/mol (1265.4314 without restraints) Performing minimization step: 2544. Total energy = 1267.9194 kcal/mol (1265.3517 without restraints) Performing minimization step: 2545. Total energy = 1267.8390 kcal/mol (1265.2722 without restraints) Performing minimization step: 2546. Total energy = 1267.7591 kcal/mol (1265.1932 without restraints) Performing minimization step: 2547. Total energy = 1267.6792 kcal/mol (1265.1140 without restraints) Performing minimization step: 2548. Total energy = 1267.5992 kcal/mol (1265.0347 without restraints) Performing minimization step: 2549. Total energy = 1267.5193 kcal/mol (1264.9557 without restraints) Performing minimization step: 2550. Total energy = 1267.4394 kcal/mol (1264.8763 without restraints) Performing minimization step: 2551. Total energy = 1267.3594 kcal/mol (1264.7971 without restraints) Performing minimization step: 2552. Total energy = 1267.2797 kcal/mol (1264.7181 without restraints) Performing minimization step: 2553. Total energy = 1267.1999 kcal/mol (1264.6390 without restraints) Performing minimization step: 2554. Total energy = 1267.1199 kcal/mol (1264.5599 without restraints) Performing minimization step: 2555. Total energy = 1267.0403 kcal/mol (1264.4810 without restraints) Performing minimization step: 2556. Total energy = 1266.9607 kcal/mol (1264.4021 without restraints) Performing minimization step: 2557. Total energy = 1266.8812 kcal/mol (1264.3233 without restraints) Performing minimization step: 2558. Total energy = 1266.8017 kcal/mol (1264.2446 without restraints) Performing minimization step: 2559. Total energy = 1266.7223 kcal/mol (1264.1658 without restraints) Performing minimization step: 2560. Total energy = 1266.6427 kcal/mol (1264.0870 without restraints) Performing minimization step: 2561. Total energy = 1266.5633 kcal/mol (1264.0084 without restraints) Performing minimization step: 2562. Total energy = 1266.4834 kcal/mol (1263.9293 without restraints) Performing minimization step: 2563. Total energy = 1266.4041 kcal/mol (1263.8507 without restraints) Performing minimization step: 2564. Total energy = 1266.3247 kcal/mol (1263.7720 without restraints) Performing minimization step: 2565. Total energy = 1266.2453 kcal/mol (1263.6934 without restraints) Performing minimization step: 2566. Total energy = 1266.1661 kcal/mol (1263.6148 without restraints) Performing minimization step: 2567. Total energy = 1266.0869 kcal/mol (1263.5364 without restraints) Performing minimization step: 2568. Total energy = 1266.0076 kcal/mol (1263.4580 without restraints) Performing minimization step: 2569. Total energy = 1265.9284 kcal/mol (1263.3794 without restraints) Performing minimization step: 2570. Total energy = 1265.8493 kcal/mol (1263.3010 without restraints) Performing minimization step: 2571. Total energy = 1265.7700 kcal/mol (1263.2224 without restraints) Performing minimization step: 2572. Total energy = 1265.6910 kcal/mol (1263.1441 without restraints) Performing minimization step: 2573. Total energy = 1265.6120 kcal/mol (1263.0659 without restraints) Performing minimization step: 2574. Total energy = 1265.5330 kcal/mol (1262.9877 without restraints) Performing minimization step: 2575. Total energy = 1265.4539 kcal/mol (1262.9093 without restraints) Performing minimization step: 2576. Total energy = 1265.3748 kcal/mol (1262.8309 without restraints) Performing minimization step: 2577. Total energy = 1265.2955 kcal/mol (1262.7523 without restraints) Performing minimization step: 2578. Total energy = 1265.2166 kcal/mol (1262.6742 without restraints) Performing minimization step: 2579. Total energy = 1265.1378 kcal/mol (1262.5961 without restraints) Performing minimization step: 2580. Total energy = 1265.0589 kcal/mol (1262.5179 without restraints) Performing minimization step: 2581. Total energy = 1264.9803 kcal/mol (1262.4401 without restraints) Performing minimization step: 2582. Total energy = 1264.9016 kcal/mol (1262.3621 without restraints) Performing minimization step: 2583. Total energy = 1264.8229 kcal/mol (1262.2842 without restraints) Performing minimization step: 2584. Total energy = 1264.7444 kcal/mol (1262.2063 without restraints) Performing minimization step: 2585. Total energy = 1264.6659 kcal/mol (1262.1286 without restraints) Performing minimization step: 2586. Total energy = 1264.5876 kcal/mol (1262.0510 without restraints) Performing minimization step: 2587. Total energy = 1264.5091 kcal/mol (1261.9732 without restraints) Performing minimization step: 2588. Total energy = 1264.4306 kcal/mol (1261.8954 without restraints) Performing minimization step: 2589. Total energy = 1264.3519 kcal/mol (1261.8175 without restraints) Performing minimization step: 2590. Total energy = 1264.2735 kcal/mol (1261.7397 without restraints) Performing minimization step: 2591. Total energy = 1264.1951 kcal/mol (1261.6621 without restraints) Performing minimization step: 2592. Total energy = 1264.1167 kcal/mol (1261.5844 without restraints) Performing minimization step: 2593. Total energy = 1264.0388 kcal/mol (1261.5073 without restraints) Performing minimization step: 2594. Total energy = 1263.9606 kcal/mol (1261.4297 without restraints) Performing minimization step: 2595. Total energy = 1263.8822 kcal/mol (1261.3521 without restraints) Performing minimization step: 2596. Total energy = 1263.8040 kcal/mol (1261.2746 without restraints) Performing minimization step: 2597. Total energy = 1263.7258 kcal/mol (1261.1971 without restraints) Performing minimization step: 2598. Total energy = 1263.6477 kcal/mol (1261.1199 without restraints) Performing minimization step: 2599. Total energy = 1263.5697 kcal/mol (1261.0425 without restraints) Performing minimization step: 2600. Total energy = 1263.4915 kcal/mol (1260.9650 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 1263.4136 kcal/mol (1260.8879 without restraints) Performing minimization step: 2602. Total energy = 1263.3356 kcal/mol (1260.8106 without restraints) Performing minimization step: 2603. Total energy = 1263.2576 kcal/mol (1260.7333 without restraints) Performing minimization step: 2604. Total energy = 1263.1797 kcal/mol (1260.6561 without restraints) Performing minimization step: 2605. Total energy = 1263.1018 kcal/mol (1260.5789 without restraints) Performing minimization step: 2606. Total energy = 1263.0240 kcal/mol (1260.5017 without restraints) Performing minimization step: 2607. Total energy = 1262.9461 kcal/mol (1260.4246 without restraints) Performing minimization step: 2608. Total energy = 1262.8683 kcal/mol (1260.3475 without restraints) Performing minimization step: 2609. Total energy = 1262.7905 kcal/mol (1260.2705 without restraints) Performing minimization step: 2610. Total energy = 1262.7128 kcal/mol (1260.1935 without restraints) Performing minimization step: 2611. Total energy = 1262.6351 kcal/mol (1260.1164 without restraints) Performing minimization step: 2612. Total energy = 1262.5574 kcal/mol (1260.0395 without restraints) Performing minimization step: 2613. Total energy = 1262.4798 kcal/mol (1259.9626 without restraints) Performing minimization step: 2614. Total energy = 1262.4022 kcal/mol (1259.8856 without restraints) Performing minimization step: 2615. Total energy = 1262.3244 kcal/mol (1259.8086 without restraints) Performing minimization step: 2616. Total energy = 1262.2468 kcal/mol (1259.7317 without restraints) Performing minimization step: 2617. Total energy = 1262.1693 kcal/mol (1259.6549 without restraints) Performing minimization step: 2618. Total energy = 1262.0917 kcal/mol (1259.5780 without restraints) Performing minimization step: 2619. Total energy = 1262.0139 kcal/mol (1259.5009 without restraints) Performing minimization step: 2620. Total energy = 1261.9365 kcal/mol (1259.4242 without restraints) Performing minimization step: 2621. Total energy = 1261.8592 kcal/mol (1259.3477 without restraints) Performing minimization step: 2622. Total energy = 1261.7820 kcal/mol (1259.2713 without restraints) Performing minimization step: 2623. Total energy = 1261.7044 kcal/mol (1259.1943 without restraints) Performing minimization step: 2624. Total energy = 1261.6272 kcal/mol (1259.1177 without restraints) Performing minimization step: 2625. Total energy = 1261.5499 kcal/mol (1259.0412 without restraints) Performing minimization step: 2626. Total energy = 1261.4728 kcal/mol (1258.9648 without restraints) Performing minimization step: 2627. Total energy = 1261.3956 kcal/mol (1258.8882 without restraints) Performing minimization step: 2628. Total energy = 1261.3182 kcal/mol (1258.8116 without restraints) Performing minimization step: 2629. Total energy = 1261.2411 kcal/mol (1258.7352 without restraints) Performing minimization step: 2630. Total energy = 1261.1641 kcal/mol (1258.6589 without restraints) Performing minimization step: 2631. Total energy = 1261.0868 kcal/mol (1258.5822 without restraints) Performing minimization step: 2632. Total energy = 1261.0097 kcal/mol (1258.5059 without restraints) Performing minimization step: 2633. Total energy = 1260.9328 kcal/mol (1258.4297 without restraints) Performing minimization step: 2634. Total energy = 1260.8562 kcal/mol (1258.3541 without restraints) Performing minimization step: 2635. Total energy = 1260.7796 kcal/mol (1258.2779 without restraints) Performing minimization step: 2636. Total energy = 1260.7021 kcal/mol (1258.2011 without restraints) Performing minimization step: 2637. Total energy = 1260.6252 kcal/mol (1258.1249 without restraints) Performing minimization step: 2638. Total energy = 1260.5484 kcal/mol (1258.0489 without restraints) Performing minimization step: 2639. Total energy = 1260.4708 kcal/mol (1257.9719 without restraints) Performing minimization step: 2640. Total energy = 1260.3941 kcal/mol (1257.8959 without restraints) Performing minimization step: 2641. Total energy = 1260.3173 kcal/mol (1257.8197 without restraints) Performing minimization step: 2642. Total energy = 1260.2405 kcal/mol (1257.7437 without restraints) Performing minimization step: 2643. Total energy = 1260.1638 kcal/mol (1257.6677 without restraints) Performing minimization step: 2644. Total energy = 1260.0872 kcal/mol (1257.5917 without restraints) Performing minimization step: 2645. Total energy = 1260.0105 kcal/mol (1257.5158 without restraints) Performing minimization step: 2646. Total energy = 1259.9340 kcal/mol (1257.4400 without restraints) Performing minimization step: 2647. Total energy = 1259.8576 kcal/mol (1257.3643 without restraints) Performing minimization step: 2648. Total energy = 1259.7807 kcal/mol (1257.2881 without restraints) Performing minimization step: 2649. Total energy = 1259.7045 kcal/mol (1257.2126 without restraints) Performing minimization step: 2650. Total energy = 1259.6274 kcal/mol (1257.1362 without restraints) Performing minimization step: 2651. Total energy = 1259.5510 kcal/mol (1257.0603 without restraints) Performing minimization step: 2652. Total energy = 1259.4745 kcal/mol (1256.9847 without restraints) Performing minimization step: 2653. Total energy = 1259.3982 kcal/mol (1256.9091 without restraints) Performing minimization step: 2654. Total energy = 1259.3220 kcal/mol (1256.8335 without restraints) Performing minimization step: 2655. Total energy = 1259.2457 kcal/mol (1256.7578 without restraints) Performing minimization step: 2656. Total energy = 1259.1691 kcal/mol (1256.6818 without restraints) Performing minimization step: 2657. Total energy = 1259.0927 kcal/mol (1256.6063 without restraints) Performing minimization step: 2658. Total energy = 1259.0166 kcal/mol (1256.5308 without restraints) Performing minimization step: 2659. Total energy = 1258.9405 kcal/mol (1256.4555 without restraints) Performing minimization step: 2660. Total energy = 1258.8644 kcal/mol (1256.3801 without restraints) Performing minimization step: 2661. Total energy = 1258.7881 kcal/mol (1256.3044 without restraints) Performing minimization step: 2662. Total energy = 1258.7120 kcal/mol (1256.2290 without restraints) Performing minimization step: 2663. Total energy = 1258.6361 kcal/mol (1256.1538 without restraints) Performing minimization step: 2664. Total energy = 1258.5599 kcal/mol (1256.0783 without restraints) Performing minimization step: 2665. Total energy = 1258.4838 kcal/mol (1256.0029 without restraints) Performing minimization step: 2666. Total energy = 1258.4078 kcal/mol (1255.9274 without restraints) Performing minimization step: 2667. Total energy = 1258.3318 kcal/mol (1255.8523 without restraints) Performing minimization step: 2668. Total energy = 1258.2560 kcal/mol (1255.7772 without restraints) Performing minimization step: 2669. Total energy = 1258.1802 kcal/mol (1255.7021 without restraints) Performing minimization step: 2670. Total energy = 1258.1044 kcal/mol (1255.6268 without restraints) Performing minimization step: 2671. Total energy = 1258.0286 kcal/mol (1255.5518 without restraints) Performing minimization step: 2672. Total energy = 1257.9526 kcal/mol (1255.4766 without restraints) Performing minimization step: 2673. Total energy = 1257.8769 kcal/mol (1255.4014 without restraints) Performing minimization step: 2674. Total energy = 1257.8010 kcal/mol (1255.3263 without restraints) Performing minimization step: 2675. Total energy = 1257.7255 kcal/mol (1255.2514 without restraints) Performing minimization step: 2676. Total energy = 1257.6497 kcal/mol (1255.1764 without restraints) Performing minimization step: 2677. Total energy = 1257.5743 kcal/mol (1255.1016 without restraints) Performing minimization step: 2678. Total energy = 1257.4989 kcal/mol (1255.0269 without restraints) Performing minimization step: 2679. Total energy = 1257.4235 kcal/mol (1254.9521 without restraints) Performing minimization step: 2680. Total energy = 1257.3476 kcal/mol (1254.8769 without restraints) Performing minimization step: 2681. Total energy = 1257.2722 kcal/mol (1254.8022 without restraints) Performing minimization step: 2682. Total energy = 1257.1968 kcal/mol (1254.7275 without restraints) Performing minimization step: 2683. Total energy = 1257.1216 kcal/mol (1254.6530 without restraints) Performing minimization step: 2684. Total energy = 1257.0464 kcal/mol (1254.5784 without restraints) Performing minimization step: 2685. Total energy = 1256.9715 kcal/mol (1254.5042 without restraints) Performing minimization step: 2686. Total energy = 1256.8962 kcal/mol (1254.4295 without restraints) Performing minimization step: 2687. Total energy = 1256.8208 kcal/mol (1254.3550 without restraints) Performing minimization step: 2688. Total energy = 1256.7455 kcal/mol (1254.2802 without restraints) Performing minimization step: 2689. Total energy = 1256.6704 kcal/mol (1254.2058 without restraints) Performing minimization step: 2690. Total energy = 1256.5952 kcal/mol (1254.1313 without restraints) Performing minimization step: 2691. Total energy = 1256.5201 kcal/mol (1254.0568 without restraints) Performing minimization step: 2692. Total energy = 1256.4450 kcal/mol (1253.9824 without restraints) Performing minimization step: 2693. Total energy = 1256.3702 kcal/mol (1253.9083 without restraints) Performing minimization step: 2694. Total energy = 1256.2952 kcal/mol (1253.8340 without restraints) Performing minimization step: 2695. Total energy = 1256.2205 kcal/mol (1253.7599 without restraints) Performing minimization step: 2696. Total energy = 1256.1456 kcal/mol (1253.6857 without restraints) Performing minimization step: 2697. Total energy = 1256.0705 kcal/mol (1253.6113 without restraints) Performing minimization step: 2698. Total energy = 1255.9955 kcal/mol (1253.5369 without restraints) Performing minimization step: 2699. Total energy = 1255.9206 kcal/mol (1253.4628 without restraints) Performing minimization step: 2700. Total energy = 1255.8458 kcal/mol (1253.3886 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 1255.7711 kcal/mol (1253.3145 without restraints) Performing minimization step: 2702. Total energy = 1255.6962 kcal/mol (1253.2402 without restraints) Performing minimization step: 2703. Total energy = 1255.6211 kcal/mol (1253.1659 without restraints) Performing minimization step: 2704. Total energy = 1255.5463 kcal/mol (1253.0918 without restraints) Performing minimization step: 2705. Total energy = 1255.4717 kcal/mol (1253.0178 without restraints) Performing minimization step: 2706. Total energy = 1255.3971 kcal/mol (1252.9439 without restraints) Performing minimization step: 2707. Total energy = 1255.3225 kcal/mol (1252.8699 without restraints) Performing minimization step: 2708. Total energy = 1255.2477 kcal/mol (1252.7959 without restraints) Performing minimization step: 2709. Total energy = 1255.1732 kcal/mol (1252.7220 without restraints) Performing minimization step: 2710. Total energy = 1255.0988 kcal/mol (1252.6482 without restraints) Performing minimization step: 2711. Total energy = 1255.0243 kcal/mol (1252.5745 without restraints) Performing minimization step: 2712. Total energy = 1254.9497 kcal/mol (1252.5005 without restraints) Performing minimization step: 2713. Total energy = 1254.8754 kcal/mol (1252.4268 without restraints) Performing minimization step: 2714. Total energy = 1254.8010 kcal/mol (1252.3531 without restraints) Performing minimization step: 2715. Total energy = 1254.7262 kcal/mol (1252.2790 without restraints) Performing minimization step: 2716. Total energy = 1254.6515 kcal/mol (1252.2050 without restraints) Performing minimization step: 2717. Total energy = 1254.5772 kcal/mol (1252.1313 without restraints) Performing minimization step: 2718. Total energy = 1254.5026 kcal/mol (1252.0573 without restraints) Performing minimization step: 2719. Total energy = 1254.4284 kcal/mol (1251.9838 without restraints) Performing minimization step: 2720. Total energy = 1254.3542 kcal/mol (1251.9103 without restraints) Performing minimization step: 2721. Total energy = 1254.2801 kcal/mol (1251.8368 without restraints) Performing minimization step: 2722. Total energy = 1254.2054 kcal/mol (1251.7627 without restraints) Performing minimization step: 2723. Total energy = 1254.1312 kcal/mol (1251.6893 without restraints) Performing minimization step: 2724. Total energy = 1254.0572 kcal/mol (1251.6159 without restraints) Performing minimization step: 2725. Total energy = 1253.9831 kcal/mol (1251.5425 without restraints) Performing minimization step: 2726. Total energy = 1253.9089 kcal/mol (1251.4689 without restraints) Performing minimization step: 2727. Total energy = 1253.8349 kcal/mol (1251.3956 without restraints) Performing minimization step: 2728. Total energy = 1253.7610 kcal/mol (1251.3224 without restraints) Performing minimization step: 2729. Total energy = 1253.6871 kcal/mol (1251.2491 without restraints) Performing minimization step: 2730. Total energy = 1253.6133 kcal/mol (1251.1760 without restraints) Performing minimization step: 2731. Total energy = 1253.5396 kcal/mol (1251.1029 without restraints) Performing minimization step: 2732. Total energy = 1253.4660 kcal/mol (1251.0299 without restraints) Performing minimization step: 2733. Total energy = 1253.3922 kcal/mol (1250.9568 without restraints) Performing minimization step: 2734. Total energy = 1253.3184 kcal/mol (1250.8837 without restraints) Performing minimization step: 2735. Total energy = 1253.2447 kcal/mol (1250.8106 without restraints) Performing minimization step: 2736. Total energy = 1253.1709 kcal/mol (1250.7374 without restraints) Performing minimization step: 2737. Total energy = 1253.0970 kcal/mol (1250.6642 without restraints) Performing minimization step: 2738. Total energy = 1253.0233 kcal/mol (1250.5911 without restraints) Performing minimization step: 2739. Total energy = 1252.9497 kcal/mol (1250.5182 without restraints) Performing minimization step: 2740. Total energy = 1252.8761 kcal/mol (1250.4453 without restraints) Performing minimization step: 2741. Total energy = 1252.8029 kcal/mol (1250.3727 without restraints) Performing minimization step: 2742. Total energy = 1252.7292 kcal/mol (1250.2995 without restraints) Performing minimization step: 2743. Total energy = 1252.6553 kcal/mol (1250.2264 without restraints) Performing minimization step: 2744. Total energy = 1252.5817 kcal/mol (1250.1534 without restraints) Performing minimization step: 2745. Total energy = 1252.5082 kcal/mol (1250.0807 without restraints) Performing minimization step: 2746. Total energy = 1252.4349 kcal/mol (1250.0079 without restraints) Performing minimization step: 2747. Total energy = 1252.3616 kcal/mol (1249.9353 without restraints) Performing minimization step: 2748. Total energy = 1252.2880 kcal/mol (1249.8624 without restraints) Performing minimization step: 2749. Total energy = 1252.2148 kcal/mol (1249.7898 without restraints) Performing minimization step: 2750. Total energy = 1252.1415 kcal/mol (1249.7171 without restraints) Performing minimization step: 2751. Total energy = 1252.0681 kcal/mol (1249.6444 without restraints) Performing minimization step: 2752. Total energy = 1251.9953 kcal/mol (1249.5722 without restraints) Performing minimization step: 2753. Total energy = 1251.9221 kcal/mol (1249.4997 without restraints) Performing minimization step: 2754. Total energy = 1251.8487 kcal/mol (1249.4269 without restraints) Performing minimization step: 2755. Total energy = 1251.7757 kcal/mol (1249.3545 without restraints) Performing minimization step: 2756. Total energy = 1251.7023 kcal/mol (1249.2817 without restraints) Performing minimization step: 2757. Total energy = 1251.6289 kcal/mol (1249.2091 without restraints) Performing minimization step: 2758. Total energy = 1251.5561 kcal/mol (1249.1369 without restraints) Performing minimization step: 2759. Total energy = 1251.4831 kcal/mol (1249.0645 without restraints) Performing minimization step: 2760. Total energy = 1251.4100 kcal/mol (1248.9921 without restraints) Performing minimization step: 2761. Total energy = 1251.3371 kcal/mol (1248.9198 without restraints) Performing minimization step: 2762. Total energy = 1251.2645 kcal/mol (1248.8478 without restraints) Performing minimization step: 2763. Total energy = 1251.1915 kcal/mol (1248.7754 without restraints) Performing minimization step: 2764. Total energy = 1251.1186 kcal/mol (1248.7032 without restraints) Performing minimization step: 2765. Total energy = 1251.0458 kcal/mol (1248.6310 without restraints) Performing minimization step: 2766. Total energy = 1250.9730 kcal/mol (1248.5589 without restraints) Performing minimization step: 2767. Total energy = 1250.9003 kcal/mol (1248.4868 without restraints) Performing minimization step: 2768. Total energy = 1250.8276 kcal/mol (1248.4147 without restraints) Performing minimization step: 2769. Total energy = 1250.7553 kcal/mol (1248.3431 without restraints) Performing minimization step: 2770. Total energy = 1250.6826 kcal/mol (1248.2711 without restraints) Performing minimization step: 2771. Total energy = 1250.6100 kcal/mol (1248.1990 without restraints) Performing minimization step: 2772. Total energy = 1250.5374 kcal/mol (1248.1271 without restraints) Performing minimization step: 2773. Total energy = 1250.4644 kcal/mol (1248.0547 without restraints) Performing minimization step: 2774. Total energy = 1250.3918 kcal/mol (1247.9828 without restraints) Performing minimization step: 2775. Total energy = 1250.3193 kcal/mol (1247.9109 without restraints) Performing minimization step: 2776. Total energy = 1250.2468 kcal/mol (1247.8390 without restraints) Performing minimization step: 2777. Total energy = 1250.1744 kcal/mol (1247.7672 without restraints) Performing minimization step: 2778. Total energy = 1250.1019 kcal/mol (1247.6955 without restraints) Performing minimization step: 2779. Total energy = 1250.0291 kcal/mol (1247.6233 without restraints) Performing minimization step: 2780. Total energy = 1249.9568 kcal/mol (1247.5515 without restraints) Performing minimization step: 2781. Total energy = 1249.8839 kcal/mol (1247.4792 without restraints) Performing minimization step: 2782. Total energy = 1249.8115 kcal/mol (1247.4075 without restraints) Performing minimization step: 2783. Total energy = 1249.7392 kcal/mol (1247.3359 without restraints) Performing minimization step: 2784. Total energy = 1249.6670 kcal/mol (1247.2643 without restraints) Performing minimization step: 2785. Total energy = 1249.5946 kcal/mol (1247.1925 without restraints) Performing minimization step: 2786. Total energy = 1249.5222 kcal/mol (1247.1208 without restraints) Performing minimization step: 2787. Total energy = 1249.4499 kcal/mol (1247.0491 without restraints) Performing minimization step: 2788. Total energy = 1249.3780 kcal/mol (1246.9779 without restraints) Performing minimization step: 2789. Total energy = 1249.3057 kcal/mol (1246.9060 without restraints) Performing minimization step: 2790. Total energy = 1249.2332 kcal/mol (1246.8343 without restraints) Performing minimization step: 2791. Total energy = 1249.1612 kcal/mol (1246.7629 without restraints) Performing minimization step: 2792. Total energy = 1249.0894 kcal/mol (1246.6917 without restraints) Performing minimization step: 2793. Total energy = 1249.0174 kcal/mol (1246.6203 without restraints) Performing minimization step: 2794. Total energy = 1248.9452 kcal/mol (1246.5488 without restraints) Performing minimization step: 2795. Total energy = 1248.8733 kcal/mol (1246.4775 without restraints) Performing minimization step: 2796. Total energy = 1248.8019 kcal/mol (1246.4067 without restraints) Performing minimization step: 2797. Total energy = 1248.7300 kcal/mol (1246.3355 without restraints) Performing minimization step: 2798. Total energy = 1248.6580 kcal/mol (1246.2641 without restraints) Performing minimization step: 2799. Total energy = 1248.5862 kcal/mol (1246.1929 without restraints) Performing minimization step: 2800. Total energy = 1248.5142 kcal/mol (1246.1215 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 1248.4425 kcal/mol (1246.0504 without restraints) Performing minimization step: 2802. Total energy = 1248.3708 kcal/mol (1245.9794 without restraints) Performing minimization step: 2803. Total energy = 1248.2991 kcal/mol (1245.9083 without restraints) Performing minimization step: 2804. Total energy = 1248.2272 kcal/mol (1245.8370 without restraints) Performing minimization step: 2805. Total energy = 1248.1557 kcal/mol (1245.7662 without restraints) Performing minimization step: 2806. Total energy = 1248.0843 kcal/mol (1245.6954 without restraints) Performing minimization step: 2807. Total energy = 1248.0129 kcal/mol (1245.6245 without restraints) Performing minimization step: 2808. Total energy = 1247.9413 kcal/mol (1245.5536 without restraints) Performing minimization step: 2809. Total energy = 1247.8698 kcal/mol (1245.4827 without restraints) Performing minimization step: 2810. Total energy = 1247.7984 kcal/mol (1245.4119 without restraints) Performing minimization step: 2811. Total energy = 1247.7268 kcal/mol (1245.3408 without restraints) Performing minimization step: 2812. Total energy = 1247.6553 kcal/mol (1245.2700 without restraints) Performing minimization step: 2813. Total energy = 1247.5839 kcal/mol (1245.1993 without restraints) Performing minimization step: 2814. Total energy = 1247.5124 kcal/mol (1245.1284 without restraints) Performing minimization step: 2815. Total energy = 1247.4412 kcal/mol (1245.0578 without restraints) Performing minimization step: 2816. Total energy = 1247.3697 kcal/mol (1244.9870 without restraints) Performing minimization step: 2817. Total energy = 1247.2985 kcal/mol (1244.9163 without restraints) Performing minimization step: 2818. Total energy = 1247.2272 kcal/mol (1244.8457 without restraints) Performing minimization step: 2819. Total energy = 1247.1565 kcal/mol (1244.7755 without restraints) Performing minimization step: 2820. Total energy = 1247.0853 kcal/mol (1244.7049 without restraints) Performing minimization step: 2821. Total energy = 1247.0141 kcal/mol (1244.6344 without restraints) Performing minimization step: 2822. Total energy = 1246.9430 kcal/mol (1244.5639 without restraints) Performing minimization step: 2823. Total energy = 1246.8718 kcal/mol (1244.4933 without restraints) Performing minimization step: 2824. Total energy = 1246.8006 kcal/mol (1244.4226 without restraints) Performing minimization step: 2825. Total energy = 1246.7295 kcal/mol (1244.3522 without restraints) Performing minimization step: 2826. Total energy = 1246.6582 kcal/mol (1244.2816 without restraints) Performing minimization step: 2827. Total energy = 1246.5873 kcal/mol (1244.2112 without restraints) Performing minimization step: 2828. Total energy = 1246.5161 kcal/mol (1244.1407 without restraints) Performing minimization step: 2829. Total energy = 1246.4452 kcal/mol (1244.0703 without restraints) Performing minimization step: 2830. Total energy = 1246.3743 kcal/mol (1244.0000 without restraints) Performing minimization step: 2831. Total energy = 1246.3035 kcal/mol (1243.9298 without restraints) Performing minimization step: 2832. Total energy = 1246.2326 kcal/mol (1243.8596 without restraints) Performing minimization step: 2833. Total energy = 1246.1618 kcal/mol (1243.7893 without restraints) Performing minimization step: 2834. Total energy = 1246.0909 kcal/mol (1243.7190 without restraints) Performing minimization step: 2835. Total energy = 1246.0200 kcal/mol (1243.6488 without restraints) Performing minimization step: 2836. Total energy = 1245.9489 kcal/mol (1243.5783 without restraints) Performing minimization step: 2837. Total energy = 1245.8781 kcal/mol (1243.5081 without restraints) Performing minimization step: 2838. Total energy = 1245.8074 kcal/mol (1243.4380 without restraints) Performing minimization step: 2839. Total energy = 1245.7369 kcal/mol (1243.3681 without restraints) Performing minimization step: 2840. Total energy = 1245.6663 kcal/mol (1243.2981 without restraints) Performing minimization step: 2841. Total energy = 1245.5957 kcal/mol (1243.2281 without restraints) Performing minimization step: 2842. Total energy = 1245.5252 kcal/mol (1243.1583 without restraints) Performing minimization step: 2843. Total energy = 1245.4548 kcal/mol (1243.0884 without restraints) Performing minimization step: 2844. Total energy = 1245.3843 kcal/mol (1243.0185 without restraints) Performing minimization step: 2845. Total energy = 1245.3138 kcal/mol (1242.9486 without restraints) Performing minimization step: 2846. Total energy = 1245.2431 kcal/mol (1242.8785 without restraints) Performing minimization step: 2847. Total energy = 1245.1727 kcal/mol (1242.8087 without restraints) Performing minimization step: 2848. Total energy = 1245.1020 kcal/mol (1242.7385 without restraints) Performing minimization step: 2849. Total energy = 1245.0313 kcal/mol (1242.6685 without restraints) Performing minimization step: 2850. Total energy = 1244.9610 kcal/mol (1242.5988 without restraints) Performing minimization step: 2851. Total energy = 1244.8907 kcal/mol (1242.5290 without restraints) Performing minimization step: 2852. Total energy = 1244.8203 kcal/mol (1242.4593 without restraints) Performing minimization step: 2853. Total energy = 1244.7500 kcal/mol (1242.3896 without restraints) Performing minimization step: 2854. Total energy = 1244.6797 kcal/mol (1242.3200 without restraints) Performing minimization step: 2855. Total energy = 1244.6093 kcal/mol (1242.2501 without restraints) Performing minimization step: 2856. Total energy = 1244.5393 kcal/mol (1242.1808 without restraints) Performing minimization step: 2857. Total energy = 1244.4692 kcal/mol (1242.1112 without restraints) Performing minimization step: 2858. Total energy = 1244.3991 kcal/mol (1242.0417 without restraints) Performing minimization step: 2859. Total energy = 1244.3289 kcal/mol (1241.9722 without restraints) Performing minimization step: 2860. Total energy = 1244.2588 kcal/mol (1241.9026 without restraints) Performing minimization step: 2861. Total energy = 1244.1888 kcal/mol (1241.8332 without restraints) Performing minimization step: 2862. Total energy = 1244.1185 kcal/mol (1241.7634 without restraints) Performing minimization step: 2863. Total energy = 1244.0484 kcal/mol (1241.6939 without restraints) Performing minimization step: 2864. Total energy = 1243.9784 kcal/mol (1241.6246 without restraints) Performing minimization step: 2865. Total energy = 1243.9083 kcal/mol (1241.5550 without restraints) Performing minimization step: 2866. Total energy = 1243.8381 kcal/mol (1241.4855 without restraints) Performing minimization step: 2867. Total energy = 1243.7684 kcal/mol (1241.4164 without restraints) Performing minimization step: 2868. Total energy = 1243.6985 kcal/mol (1241.3471 without restraints) Performing minimization step: 2869. Total energy = 1243.6287 kcal/mol (1241.2778 without restraints) Performing minimization step: 2870. Total energy = 1243.5589 kcal/mol (1241.2086 without restraints) Performing minimization step: 2871. Total energy = 1243.4891 kcal/mol (1241.1394 without restraints) Performing minimization step: 2872. Total energy = 1243.4194 kcal/mol (1241.0703 without restraints) Performing minimization step: 2873. Total energy = 1243.3499 kcal/mol (1241.0014 without restraints) Performing minimization step: 2874. Total energy = 1243.2800 kcal/mol (1240.9321 without restraints) Performing minimization step: 2875. Total energy = 1243.2104 kcal/mol (1240.8632 without restraints) Performing minimization step: 2876. Total energy = 1243.1408 kcal/mol (1240.7941 without restraints) Performing minimization step: 2877. Total energy = 1243.0712 kcal/mol (1240.7251 without restraints) Performing minimization step: 2878. Total energy = 1243.0017 kcal/mol (1240.6561 without restraints) Performing minimization step: 2879. Total energy = 1242.9321 kcal/mol (1240.5871 without restraints) Performing minimization step: 2880. Total energy = 1242.8627 kcal/mol (1240.5183 without restraints) Performing minimization step: 2881. Total energy = 1242.7932 kcal/mol (1240.4493 without restraints) Performing minimization step: 2882. Total energy = 1242.7237 kcal/mol (1240.3804 without restraints) Performing minimization step: 2883. Total energy = 1242.6542 kcal/mol (1240.3115 without restraints) Performing minimization step: 2884. Total energy = 1242.5848 kcal/mol (1240.2427 without restraints) Performing minimization step: 2885. Total energy = 1242.5154 kcal/mol (1240.1739 without restraints) Performing minimization step: 2886. Total energy = 1242.4460 kcal/mol (1240.1052 without restraints) Performing minimization step: 2887. Total energy = 1242.3766 kcal/mol (1240.0363 without restraints) Performing minimization step: 2888. Total energy = 1242.3073 kcal/mol (1239.9676 without restraints) Performing minimization step: 2889. Total energy = 1242.2378 kcal/mol (1239.8986 without restraints) Performing minimization step: 2890. Total energy = 1242.1686 kcal/mol (1239.8299 without restraints) Performing minimization step: 2891. Total energy = 1242.0992 kcal/mol (1239.7612 without restraints) Performing minimization step: 2892. Total energy = 1242.0307 kcal/mol (1239.6933 without restraints) Performing minimization step: 2893. Total energy = 1241.9616 kcal/mol (1239.6248 without restraints) Performing minimization step: 2894. Total energy = 1241.8923 kcal/mol (1239.5560 without restraints) Performing minimization step: 2895. Total energy = 1241.8232 kcal/mol (1239.4876 without restraints) Performing minimization step: 2896. Total energy = 1241.7542 kcal/mol (1239.4191 without restraints) Performing minimization step: 2897. Total energy = 1241.6852 kcal/mol (1239.3508 without restraints) Performing minimization step: 2898. Total energy = 1241.6162 kcal/mol (1239.2822 without restraints) Performing minimization step: 2899. Total energy = 1241.5471 kcal/mol (1239.2137 without restraints) Performing minimization step: 2900. Total energy = 1241.4779 kcal/mol (1239.1451 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 1241.4089 kcal/mol (1239.0767 without restraints) Performing minimization step: 2902. Total energy = 1241.3400 kcal/mol (1239.0083 without restraints) Performing minimization step: 2903. Total energy = 1241.2710 kcal/mol (1238.9400 without restraints) Performing minimization step: 2904. Total energy = 1241.2030 kcal/mol (1238.8725 without restraints) Performing minimization step: 2905. Total energy = 1241.1341 kcal/mol (1238.8042 without restraints) Performing minimization step: 2906. Total energy = 1241.0653 kcal/mol (1238.7360 without restraints) Performing minimization step: 2907. Total energy = 1240.9966 kcal/mol (1238.6679 without restraints) Performing minimization step: 2908. Total energy = 1240.9278 kcal/mol (1238.5996 without restraints) Performing minimization step: 2909. Total energy = 1240.8590 kcal/mol (1238.5314 without restraints) Performing minimization step: 2910. Total energy = 1240.7900 kcal/mol (1238.4628 without restraints) Performing minimization step: 2911. Total energy = 1240.7211 kcal/mol (1238.3947 without restraints) Performing minimization step: 2912. Total energy = 1240.6524 kcal/mol (1238.3265 without restraints) Performing minimization step: 2913. Total energy = 1240.5838 kcal/mol (1238.2585 without restraints) Performing minimization step: 2914. Total energy = 1240.5152 kcal/mol (1238.1904 without restraints) Performing minimization step: 2915. Total energy = 1240.4465 kcal/mol (1238.1224 without restraints) Performing minimization step: 2916. Total energy = 1240.3779 kcal/mol (1238.0543 without restraints) Performing minimization step: 2917. Total energy = 1240.3094 kcal/mol (1237.9864 without restraints) Performing minimization step: 2918. Total energy = 1240.2409 kcal/mol (1237.9184 without restraints) Performing minimization step: 2919. Total energy = 1240.1724 kcal/mol (1237.8505 without restraints) Performing minimization step: 2920. Total energy = 1240.1040 kcal/mol (1237.7827 without restraints) Performing minimization step: 2921. Total energy = 1240.0355 kcal/mol (1237.7148 without restraints) Performing minimization step: 2922. Total energy = 1239.9667 kcal/mol (1237.6464 without restraints) Performing minimization step: 2923. Total energy = 1239.8983 kcal/mol (1237.5787 without restraints) Performing minimization step: 2924. Total energy = 1239.8300 kcal/mol (1237.5110 without restraints) Performing minimization step: 2925. Total energy = 1239.7617 kcal/mol (1237.4432 without restraints) Performing minimization step: 2926. Total energy = 1239.6932 kcal/mol (1237.3753 without restraints) Performing minimization step: 2927. Total energy = 1239.6250 kcal/mol (1237.3076 without restraints) Performing minimization step: 2928. Total energy = 1239.5567 kcal/mol (1237.2400 without restraints) Performing minimization step: 2929. Total energy = 1239.4885 kcal/mol (1237.1723 without restraints) Performing minimization step: 2930. Total energy = 1239.4203 kcal/mol (1237.1047 without restraints) Performing minimization step: 2931. Total energy = 1239.3522 kcal/mol (1237.0371 without restraints) Performing minimization step: 2932. Total energy = 1239.2841 kcal/mol (1236.9696 without restraints) Performing minimization step: 2933. Total energy = 1239.2156 kcal/mol (1236.9017 without restraints) Performing minimization step: 2934. Total energy = 1239.1479 kcal/mol (1236.8345 without restraints) Performing minimization step: 2935. Total energy = 1239.0798 kcal/mol (1236.7670 without restraints) Performing minimization step: 2936. Total energy = 1239.0116 kcal/mol (1236.6993 without restraints) Performing minimization step: 2937. Total energy = 1238.9431 kcal/mol (1236.6314 without restraints) Performing minimization step: 2938. Total energy = 1238.8747 kcal/mol (1236.5636 without restraints) Performing minimization step: 2939. Total energy = 1238.8067 kcal/mol (1236.4962 without restraints) Performing minimization step: 2940. Total energy = 1238.7384 kcal/mol (1236.4284 without restraints) Performing minimization step: 2941. Total energy = 1238.6706 kcal/mol (1236.3613 without restraints) Performing minimization step: 2942. Total energy = 1238.6028 kcal/mol (1236.2940 without restraints) Performing minimization step: 2943. Total energy = 1238.5350 kcal/mol (1236.2267 without restraints) Performing minimization step: 2944. Total energy = 1238.4670 kcal/mol (1236.1592 without restraints) Performing minimization step: 2945. Total energy = 1238.3992 kcal/mol (1236.0920 without restraints) Performing minimization step: 2946. Total energy = 1238.3315 kcal/mol (1236.0249 without restraints) Performing minimization step: 2947. Total energy = 1238.2637 kcal/mol (1235.9576 without restraints) Performing minimization step: 2948. Total energy = 1238.1961 kcal/mol (1235.8906 without restraints) Performing minimization step: 2949. Total energy = 1238.1284 kcal/mol (1235.8235 without restraints) Performing minimization step: 2950. Total energy = 1238.0605 kcal/mol (1235.7561 without restraints) Performing minimization step: 2951. Total energy = 1237.9929 kcal/mol (1235.6890 without restraints) Performing minimization step: 2952. Total energy = 1237.9253 kcal/mol (1235.6220 without restraints) Performing minimization step: 2953. Total energy = 1237.8580 kcal/mol (1235.5552 without restraints) Performing minimization step: 2954. Total energy = 1237.7903 kcal/mol (1235.4880 without restraints) Performing minimization step: 2955. Total energy = 1237.7226 kcal/mol (1235.4210 without restraints) Performing minimization step: 2956. Total energy = 1237.6551 kcal/mol (1235.3540 without restraints) Performing minimization step: 2957. Total energy = 1237.5874 kcal/mol (1235.2869 without restraints) Performing minimization step: 2958. Total energy = 1237.5198 kcal/mol (1235.2198 without restraints) Performing minimization step: 2959. Total energy = 1237.4523 kcal/mol (1235.1529 without restraints) Performing minimization step: 2960. Total energy = 1237.3849 kcal/mol (1235.0860 without restraints) Performing minimization step: 2961. Total energy = 1237.3176 kcal/mol (1235.0193 without restraints) Performing minimization step: 2962. Total energy = 1237.2504 kcal/mol (1234.9526 without restraints) Performing minimization step: 2963. Total energy = 1237.1831 kcal/mol (1234.8859 without restraints) Performing minimization step: 2964. Total energy = 1237.1158 kcal/mol (1234.8191 without restraints) Performing minimization step: 2965. Total energy = 1237.0483 kcal/mol (1234.7522 without restraints) Performing minimization step: 2966. Total energy = 1236.9809 kcal/mol (1234.6853 without restraints) Performing minimization step: 2967. Total energy = 1236.9137 kcal/mol (1234.6186 without restraints) Performing minimization step: 2968. Total energy = 1236.8463 kcal/mol (1234.5519 without restraints) Performing minimization step: 2969. Total energy = 1236.7794 kcal/mol (1234.4854 without restraints) Performing minimization step: 2970. Total energy = 1236.7120 kcal/mol (1234.4186 without restraints) Performing minimization step: 2971. Total energy = 1236.6449 kcal/mol (1234.3521 without restraints) Performing minimization step: 2972. Total energy = 1236.5776 kcal/mol (1234.2854 without restraints) Performing minimization step: 2973. Total energy = 1236.5106 kcal/mol (1234.2188 without restraints) Performing minimization step: 2974. Total energy = 1236.4435 kcal/mol (1234.1523 without restraints) Performing minimization step: 2975. Total energy = 1236.3762 kcal/mol (1234.0856 without restraints) Performing minimization step: 2976. Total energy = 1236.3093 kcal/mol (1234.0193 without restraints) Performing minimization step: 2977. Total energy = 1236.2427 kcal/mol (1233.9531 without restraints) Performing minimization step: 2978. Total energy = 1236.1757 kcal/mol (1233.8867 without restraints) Performing minimization step: 2979. Total energy = 1236.1086 kcal/mol (1233.8201 without restraints) Performing minimization step: 2980. Total energy = 1236.0417 kcal/mol (1233.7538 without restraints) Performing minimization step: 2981. Total energy = 1235.9749 kcal/mol (1233.6877 without restraints) Performing minimization step: 2982. Total energy = 1235.9083 kcal/mol (1233.6215 without restraints) Performing minimization step: 2983. Total energy = 1235.8415 kcal/mol (1233.5552 without restraints) Performing minimization step: 2984. Total energy = 1235.7747 kcal/mol (1233.4890 without restraints) Performing minimization step: 2985. Total energy = 1235.7078 kcal/mol (1233.4226 without restraints) Performing minimization step: 2986. Total energy = 1235.6411 kcal/mol (1233.3564 without restraints) Performing minimization step: 2987. Total energy = 1235.5743 kcal/mol (1233.2902 without restraints) Performing minimization step: 2988. Total energy = 1235.5073 kcal/mol (1233.2234 without restraints) Performing minimization step: 2989. Total energy = 1235.4406 kcal/mol (1233.1576 without restraints) Performing minimization step: 2990. Total energy = 1235.3740 kcal/mol (1233.0915 without restraints) Performing minimization step: 2991. Total energy = 1235.3072 kcal/mol (1233.0251 without restraints) Performing minimization step: 2992. Total energy = 1235.2405 kcal/mol (1232.9591 without restraints) Performing minimization step: 2993. Total energy = 1235.1738 kcal/mol (1232.8928 without restraints) Performing minimization step: 2994. Total energy = 1235.1072 kcal/mol (1232.8268 without restraints) Performing minimization step: 2995. Total energy = 1235.0407 kcal/mol (1232.7609 without restraints) Performing minimization step: 2996. Total energy = 1234.9740 kcal/mol (1232.6947 without restraints) Performing minimization step: 2997. Total energy = 1234.9076 kcal/mol (1232.6288 without restraints) Performing minimization step: 2998. Total energy = 1234.8411 kcal/mol (1232.5629 without restraints) Performing minimization step: 2999. Total energy = 1234.7745 kcal/mol (1232.4968 without restraints) Performing minimization step: 3000. Total energy = 1234.7081 kcal/mol (1232.4310 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 1234.6416 kcal/mol (1232.3650 without restraints) Performing minimization step: 3002. Total energy = 1234.5751 kcal/mol (1232.2990 without restraints) Performing minimization step: 3003. Total energy = 1234.5089 kcal/mol (1232.2332 without restraints) Performing minimization step: 3004. Total energy = 1234.4425 kcal/mol (1232.1675 without restraints) Performing minimization step: 3005. Total energy = 1234.3762 kcal/mol (1232.1018 without restraints) Performing minimization step: 3006. Total energy = 1234.3098 kcal/mol (1232.0359 without restraints) Performing minimization step: 3007. Total energy = 1234.2436 kcal/mol (1231.9703 without restraints) Performing minimization step: 3008. Total energy = 1234.1776 kcal/mol (1231.9048 without restraints) Performing minimization step: 3009. Total energy = 1234.1113 kcal/mol (1231.8390 without restraints) Performing minimization step: 3010. Total energy = 1234.0452 kcal/mol (1231.7734 without restraints) Performing minimization step: 3011. Total energy = 1233.9789 kcal/mol (1231.7077 without restraints) Performing minimization step: 3012. Total energy = 1233.9126 kcal/mol (1231.6419 without restraints) Performing minimization step: 3013. Total energy = 1233.8468 kcal/mol (1231.5766 without restraints) Performing minimization step: 3014. Total energy = 1233.7808 kcal/mol (1231.5111 without restraints) Performing minimization step: 3015. Total energy = 1233.7148 kcal/mol (1231.4457 without restraints) Performing minimization step: 3016. Total energy = 1233.6492 kcal/mol (1231.3806 without restraints) Performing minimization step: 3017. Total energy = 1233.5833 kcal/mol (1231.3152 without restraints) Performing minimization step: 3018. Total energy = 1233.5174 kcal/mol (1231.2498 without restraints) Performing minimization step: 3019. Total energy = 1233.4515 kcal/mol (1231.1845 without restraints) Performing minimization step: 3020. Total energy = 1233.3857 kcal/mol (1231.1192 without restraints) Performing minimization step: 3021. Total energy = 1233.3203 kcal/mol (1231.0544 without restraints) Performing minimization step: 3022. Total energy = 1233.2545 kcal/mol (1230.9891 without restraints) Performing minimization step: 3023. Total energy = 1233.1887 kcal/mol (1230.9238 without restraints) Performing minimization step: 3024. Total energy = 1233.1227 kcal/mol (1230.8583 without restraints) Performing minimization step: 3025. Total energy = 1233.0570 kcal/mol (1230.7931 without restraints) Performing minimization step: 3026. Total energy = 1232.9914 kcal/mol (1230.7280 without restraints) Performing minimization step: 3027. Total energy = 1232.9256 kcal/mol (1230.6628 without restraints) Performing minimization step: 3028. Total energy = 1232.8599 kcal/mol (1230.5976 without restraints) Performing minimization step: 3029. Total energy = 1232.7945 kcal/mol (1230.5328 without restraints) Performing minimization step: 3030. Total energy = 1232.7289 kcal/mol (1230.4677 without restraints) Performing minimization step: 3031. Total energy = 1232.6633 kcal/mol (1230.4026 without restraints) Performing minimization step: 3032. Total energy = 1232.5978 kcal/mol (1230.3376 without restraints) Performing minimization step: 3033. Total energy = 1232.5322 kcal/mol (1230.2726 without restraints) Performing minimization step: 3034. Total energy = 1232.4667 kcal/mol (1230.2076 without restraints) Performing minimization step: 3035. Total energy = 1232.4012 kcal/mol (1230.1425 without restraints) Performing minimization step: 3036. Total energy = 1232.3356 kcal/mol (1230.0775 without restraints) Performing minimization step: 3037. Total energy = 1232.2702 kcal/mol (1230.0126 without restraints) Performing minimization step: 3038. Total energy = 1232.2047 kcal/mol (1229.9477 without restraints) Performing minimization step: 3039. Total energy = 1232.1393 kcal/mol (1229.8828 without restraints) Performing minimization step: 3040. Total energy = 1232.0739 kcal/mol (1229.8178 without restraints) Performing minimization step: 3041. Total energy = 1232.0085 kcal/mol (1229.7530 without restraints) Performing minimization step: 3042. Total energy = 1231.9432 kcal/mol (1229.6883 without restraints) Performing minimization step: 3043. Total energy = 1231.8780 kcal/mol (1229.6236 without restraints) Performing minimization step: 3044. Total energy = 1231.8128 kcal/mol (1229.5589 without restraints) Performing minimization step: 3045. Total energy = 1231.7476 kcal/mol (1229.4941 without restraints) Performing minimization step: 3046. Total energy = 1231.6826 kcal/mol (1229.4297 without restraints) Performing minimization step: 3047. Total energy = 1231.6171 kcal/mol (1229.3648 without restraints) Performing minimization step: 3048. Total energy = 1231.5518 kcal/mol (1229.2999 without restraints) Performing minimization step: 3049. Total energy = 1231.4866 kcal/mol (1229.2353 without restraints) Performing minimization step: 3050. Total energy = 1231.4215 kcal/mol (1229.1707 without restraints) Performing minimization step: 3051. Total energy = 1231.3564 kcal/mol (1229.1061 without restraints) Performing minimization step: 3052. Total energy = 1231.2913 kcal/mol (1229.0415 without restraints) Performing minimization step: 3053. Total energy = 1231.2263 kcal/mol (1228.9770 without restraints) Performing minimization step: 3054. Total energy = 1231.1614 kcal/mol (1228.9127 without restraints) Performing minimization step: 3055. Total energy = 1231.0967 kcal/mol (1228.8485 without restraints) Performing minimization step: 3056. Total energy = 1231.0318 kcal/mol (1228.7840 without restraints) Performing minimization step: 3057. Total energy = 1230.9672 kcal/mol (1228.7200 without restraints) Performing minimization step: 3058. Total energy = 1230.9023 kcal/mol (1228.6555 without restraints) Performing minimization step: 3059. Total energy = 1230.8374 kcal/mol (1228.5912 without restraints) Performing minimization step: 3060. Total energy = 1230.7725 kcal/mol (1228.5268 without restraints) Performing minimization step: 3061. Total energy = 1230.7077 kcal/mol (1228.4626 without restraints) Performing minimization step: 3062. Total energy = 1230.6429 kcal/mol (1228.3983 without restraints) Performing minimization step: 3063. Total energy = 1230.5779 kcal/mol (1228.3338 without restraints) Performing minimization step: 3064. Total energy = 1230.5132 kcal/mol (1228.2695 without restraints) Performing minimization step: 3065. Total energy = 1230.4488 kcal/mol (1228.2057 without restraints) Performing minimization step: 3066. Total energy = 1230.3840 kcal/mol (1228.1414 without restraints) Performing minimization step: 3067. Total energy = 1230.3193 kcal/mol (1228.0772 without restraints) Performing minimization step: 3068. Total energy = 1230.2547 kcal/mol (1228.0131 without restraints) Performing minimization step: 3069. Total energy = 1230.1899 kcal/mol (1227.9487 without restraints) Performing minimization step: 3070. Total energy = 1230.1251 kcal/mol (1227.8845 without restraints) Performing minimization step: 3071. Total energy = 1230.0605 kcal/mol (1227.8205 without restraints) Performing minimization step: 3072. Total energy = 1229.9960 kcal/mol (1227.7565 without restraints) Performing minimization step: 3073. Total energy = 1229.9313 kcal/mol (1227.6923 without restraints) Performing minimization step: 3074. Total energy = 1229.8667 kcal/mol (1227.6281 without restraints) Performing minimization step: 3075. Total energy = 1229.8019 kcal/mol (1227.5639 without restraints) Performing minimization step: 3076. Total energy = 1229.7375 kcal/mol (1227.5000 without restraints) Performing minimization step: 3077. Total energy = 1229.6729 kcal/mol (1227.4358 without restraints) Performing minimization step: 3078. Total energy = 1229.6088 kcal/mol (1227.3723 without restraints) Performing minimization step: 3079. Total energy = 1229.5442 kcal/mol (1227.3082 without restraints) Performing minimization step: 3080. Total energy = 1229.4799 kcal/mol (1227.2444 without restraints) Performing minimization step: 3081. Total energy = 1229.4155 kcal/mol (1227.1807 without restraints) Performing minimization step: 3082. Total energy = 1229.3514 kcal/mol (1227.1169 without restraints) Performing minimization step: 3083. Total energy = 1229.2872 kcal/mol (1227.0532 without restraints) Performing minimization step: 3084. Total energy = 1229.2227 kcal/mol (1226.9892 without restraints) Performing minimization step: 3085. Total energy = 1229.1585 kcal/mol (1226.9255 without restraints) Performing minimization step: 3086. Total energy = 1229.0941 kcal/mol (1226.8616 without restraints) Performing minimization step: 3087. Total energy = 1229.0298 kcal/mol (1226.7978 without restraints) Performing minimization step: 3088. Total energy = 1228.9656 kcal/mol (1226.7341 without restraints) Performing minimization step: 3089. Total energy = 1228.9012 kcal/mol (1226.6702 without restraints) Performing minimization step: 3090. Total energy = 1228.8371 kcal/mol (1226.6066 without restraints) Performing minimization step: 3091. Total energy = 1228.7733 kcal/mol (1226.5434 without restraints) Performing minimization step: 3092. Total energy = 1228.7094 kcal/mol (1226.4799 without restraints) Performing minimization step: 3093. Total energy = 1228.6453 kcal/mol (1226.4162 without restraints) Performing minimization step: 3094. Total energy = 1228.5810 kcal/mol (1226.3525 without restraints) Performing minimization step: 3095. Total energy = 1228.5170 kcal/mol (1226.2890 without restraints) Performing minimization step: 3096. Total energy = 1228.4530 kcal/mol (1226.2255 without restraints) Performing minimization step: 3097. Total energy = 1228.3895 kcal/mol (1226.1625 without restraints) Performing minimization step: 3098. Total energy = 1228.3256 kcal/mol (1226.0991 without restraints) Performing minimization step: 3099. Total energy = 1228.2617 kcal/mol (1226.0357 without restraints) Performing minimization step: 3100. Total energy = 1228.1978 kcal/mol (1225.9724 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 1228.1340 kcal/mol (1225.9090 without restraints) Performing minimization step: 3102. Total energy = 1228.0702 kcal/mol (1225.8457 without restraints) Performing minimization step: 3103. Total energy = 1228.0064 kcal/mol (1225.7824 without restraints) Performing minimization step: 3104. Total energy = 1227.9427 kcal/mol (1225.7192 without restraints) Performing minimization step: 3105. Total energy = 1227.8790 kcal/mol (1225.6560 without restraints) Performing minimization step: 3106. Total energy = 1227.8152 kcal/mol (1225.5926 without restraints) Performing minimization step: 3107. Total energy = 1227.7515 kcal/mol (1225.5295 without restraints) Performing minimization step: 3108. Total energy = 1227.6879 kcal/mol (1225.4664 without restraints) Performing minimization step: 3109. Total energy = 1227.6245 kcal/mol (1225.4035 without restraints) Performing minimization step: 3110. Total energy = 1227.5609 kcal/mol (1225.3403 without restraints) Performing minimization step: 3111. Total energy = 1227.4975 kcal/mol (1225.2776 without restraints) Performing minimization step: 3112. Total energy = 1227.4341 kcal/mol (1225.2146 without restraints) Performing minimization step: 3113. Total energy = 1227.3705 kcal/mol (1225.1513 without restraints) Performing minimization step: 3114. Total energy = 1227.3064 kcal/mol (1225.0879 without restraints) Performing minimization step: 3115. Total energy = 1227.2427 kcal/mol (1225.0247 without restraints) Performing minimization step: 3116. Total energy = 1227.1792 kcal/mol (1224.9616 without restraints) Performing minimization step: 3117. Total energy = 1227.1159 kcal/mol (1224.8988 without restraints) Performing minimization step: 3118. Total energy = 1227.0524 kcal/mol (1224.8358 without restraints) Performing minimization step: 3119. Total energy = 1226.9890 kcal/mol (1224.7729 without restraints) Performing minimization step: 3120. Total energy = 1226.9257 kcal/mol (1224.7101 without restraints) Performing minimization step: 3121. Total energy = 1226.8623 kcal/mol (1224.6472 without restraints) Performing minimization step: 3122. Total energy = 1226.7992 kcal/mol (1224.5846 without restraints) Performing minimization step: 3123. Total energy = 1226.7356 kcal/mol (1224.5214 without restraints) Performing minimization step: 3124. Total energy = 1226.6723 kcal/mol (1224.4587 without restraints) Performing minimization step: 3125. Total energy = 1226.6089 kcal/mol (1224.3957 without restraints) Performing minimization step: 3126. Total energy = 1226.5457 kcal/mol (1224.3330 without restraints) Performing minimization step: 3127. Total energy = 1226.4825 kcal/mol (1224.2703 without restraints) Performing minimization step: 3128. Total energy = 1226.4193 kcal/mol (1224.2076 without restraints) Performing minimization step: 3129. Total energy = 1226.3561 kcal/mol (1224.1449 without restraints) Performing minimization step: 3130. Total energy = 1226.2929 kcal/mol (1224.0820 without restraints) Performing minimization step: 3131. Total energy = 1226.2300 kcal/mol (1224.0198 without restraints) Performing minimization step: 3132. Total energy = 1226.1667 kcal/mol (1223.9570 without restraints) Performing minimization step: 3133. Total energy = 1226.1037 kcal/mol (1223.8944 without restraints) Performing minimization step: 3134. Total energy = 1226.0407 kcal/mol (1223.8319 without restraints) Performing minimization step: 3135. Total energy = 1225.9777 kcal/mol (1223.7694 without restraints) Performing minimization step: 3136. Total energy = 1225.9149 kcal/mol (1223.7070 without restraints) Performing minimization step: 3137. Total energy = 1225.8519 kcal/mol (1223.6446 without restraints) Performing minimization step: 3138. Total energy = 1225.7890 kcal/mol (1223.5821 without restraints) Performing minimization step: 3139. Total energy = 1225.7258 kcal/mol (1223.5194 without restraints) Performing minimization step: 3140. Total energy = 1225.6629 kcal/mol (1223.4570 without restraints) Performing minimization step: 3141. Total energy = 1225.5998 kcal/mol (1223.3944 without restraints) Performing minimization step: 3142. Total energy = 1225.5370 kcal/mol (1223.3321 without restraints) Performing minimization step: 3143. Total energy = 1225.4743 kcal/mol (1223.2697 without restraints) Performing minimization step: 3144. Total energy = 1225.4114 kcal/mol (1223.2075 without restraints) Performing minimization step: 3145. Total energy = 1225.3485 kcal/mol (1223.1450 without restraints) Performing minimization step: 3146. Total energy = 1225.2859 kcal/mol (1223.0829 without restraints) Performing minimization step: 3147. Total energy = 1225.2232 kcal/mol (1223.0207 without restraints) Performing minimization step: 3148. Total energy = 1225.1603 kcal/mol (1222.9583 without restraints) Performing minimization step: 3149. Total energy = 1225.0976 kcal/mol (1222.8961 without restraints) Performing minimization step: 3150. Total energy = 1225.0349 kcal/mol (1222.8338 without restraints) Performing minimization step: 3151. Total energy = 1224.9718 kcal/mol (1222.7711 without restraints) Performing minimization step: 3152. Total energy = 1224.9091 kcal/mol (1222.7090 without restraints) Performing minimization step: 3153. Total energy = 1224.8466 kcal/mol (1222.6469 without restraints) Performing minimization step: 3154. Total energy = 1224.7839 kcal/mol (1222.5846 without restraints) Performing minimization step: 3155. Total energy = 1224.7213 kcal/mol (1222.5226 without restraints) Performing minimization step: 3156. Total energy = 1224.6584 kcal/mol (1222.4601 without restraints) Performing minimization step: 3157. Total energy = 1224.5959 kcal/mol (1222.3982 without restraints) Performing minimization step: 3158. Total energy = 1224.5335 kcal/mol (1222.3362 without restraints) Performing minimization step: 3159. Total energy = 1224.4711 kcal/mol (1222.2743 without restraints) Performing minimization step: 3160. Total energy = 1224.4087 kcal/mol (1222.2124 without restraints) Performing minimization step: 3161. Total energy = 1224.3461 kcal/mol (1222.1503 without restraints) Performing minimization step: 3162. Total energy = 1224.2838 kcal/mol (1222.0884 without restraints) Performing minimization step: 3163. Total energy = 1224.2215 kcal/mol (1222.0267 without restraints) Performing minimization step: 3164. Total energy = 1224.1591 kcal/mol (1221.9647 without restraints) Performing minimization step: 3165. Total energy = 1224.0968 kcal/mol (1221.9029 without restraints) Performing minimization step: 3166. Total energy = 1224.0344 kcal/mol (1221.8409 without restraints) Performing minimization step: 3167. Total energy = 1223.9721 kcal/mol (1221.7792 without restraints) Performing minimization step: 3168. Total energy = 1223.9100 kcal/mol (1221.7175 without restraints) Performing minimization step: 3169. Total energy = 1223.8478 kcal/mol (1221.6558 without restraints) Performing minimization step: 3170. Total energy = 1223.7853 kcal/mol (1221.5937 without restraints) Performing minimization step: 3171. Total energy = 1223.7230 kcal/mol (1221.5319 without restraints) Performing minimization step: 3172. Total energy = 1223.6609 kcal/mol (1221.4703 without restraints) Performing minimization step: 3173. Total energy = 1223.5988 kcal/mol (1221.4087 without restraints) Performing minimization step: 3174. Total energy = 1223.5368 kcal/mol (1221.3471 without restraints) Performing minimization step: 3175. Total energy = 1223.4749 kcal/mol (1221.2857 without restraints) Performing minimization step: 3176. Total energy = 1223.4131 kcal/mol (1221.2243 without restraints) Performing minimization step: 3177. Total energy = 1223.3509 kcal/mol (1221.1626 without restraints) Performing minimization step: 3178. Total energy = 1223.2890 kcal/mol (1221.1012 without restraints) Performing minimization step: 3179. Total energy = 1223.2270 kcal/mol (1221.0397 without restraints) Performing minimization step: 3180. Total energy = 1223.1651 kcal/mol (1220.9783 without restraints) Performing minimization step: 3181. Total energy = 1223.1033 kcal/mol (1220.9169 without restraints) Performing minimization step: 3182. Total energy = 1223.0415 kcal/mol (1220.8555 without restraints) Performing minimization step: 3183. Total energy = 1222.9796 kcal/mol (1220.7942 without restraints) Performing minimization step: 3184. Total energy = 1222.9179 kcal/mol (1220.7329 without restraints) Performing minimization step: 3185. Total energy = 1222.8560 kcal/mol (1220.6715 without restraints) Performing minimization step: 3186. Total energy = 1222.7942 kcal/mol (1220.6102 without restraints) Performing minimization step: 3187. Total energy = 1222.7325 kcal/mol (1220.5489 without restraints) Performing minimization step: 3188. Total energy = 1222.6707 kcal/mol (1220.4875 without restraints) Performing minimization step: 3189. Total energy = 1222.6090 kcal/mol (1220.4263 without restraints) Performing minimization step: 3190. Total energy = 1222.5475 kcal/mol (1220.3654 without restraints) Performing minimization step: 3191. Total energy = 1222.4859 kcal/mol (1220.3042 without restraints) Performing minimization step: 3192. Total energy = 1222.4243 kcal/mol (1220.2431 without restraints) Performing minimization step: 3193. Total energy = 1222.3628 kcal/mol (1220.1820 without restraints) Performing minimization step: 3194. Total energy = 1222.3012 kcal/mol (1220.1209 without restraints) Performing minimization step: 3195. Total energy = 1222.2399 kcal/mol (1220.0600 without restraints) Performing minimization step: 3196. Total energy = 1222.1784 kcal/mol (1219.9990 without restraints) Performing minimization step: 3197. Total energy = 1222.1170 kcal/mol (1219.9381 without restraints) Performing minimization step: 3198. Total energy = 1222.0556 kcal/mol (1219.8771 without restraints) Performing minimization step: 3199. Total energy = 1221.9942 kcal/mol (1219.8163 without restraints) Performing minimization step: 3200. Total energy = 1221.9333 kcal/mol (1219.7558 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 1221.8720 kcal/mol (1219.6949 without restraints) Performing minimization step: 3202. Total energy = 1221.8104 kcal/mol (1219.6338 without restraints) Performing minimization step: 3203. Total energy = 1221.7491 kcal/mol (1219.5729 without restraints) Performing minimization step: 3204. Total energy = 1221.6878 kcal/mol (1219.5121 without restraints) Performing minimization step: 3205. Total energy = 1221.6268 kcal/mol (1219.4515 without restraints) Performing minimization step: 3206. Total energy = 1221.5653 kcal/mol (1219.3905 without restraints) Performing minimization step: 3207. Total energy = 1221.5039 kcal/mol (1219.3295 without restraints) Performing minimization step: 3208. Total energy = 1221.4428 kcal/mol (1219.2690 without restraints) Performing minimization step: 3209. Total energy = 1221.3817 kcal/mol (1219.2082 without restraints) Performing minimization step: 3210. Total energy = 1221.3203 kcal/mol (1219.1473 without restraints) Performing minimization step: 3211. Total energy = 1221.2588 kcal/mol (1219.0863 without restraints) Performing minimization step: 3212. Total energy = 1221.1978 kcal/mol (1219.0258 without restraints) Performing minimization step: 3213. Total energy = 1221.1365 kcal/mol (1218.9649 without restraints) Performing minimization step: 3214. Total energy = 1221.0755 kcal/mol (1218.9043 without restraints) Performing minimization step: 3215. Total energy = 1221.0141 kcal/mol (1218.8434 without restraints) Performing minimization step: 3216. Total energy = 1220.9531 kcal/mol (1218.7829 without restraints) Performing minimization step: 3217. Total energy = 1220.8918 kcal/mol (1218.7219 without restraints) Performing minimization step: 3218. Total energy = 1220.8307 kcal/mol (1218.6614 without restraints) Performing minimization step: 3219. Total energy = 1220.7698 kcal/mol (1218.6009 without restraints) Performing minimization step: 3220. Total energy = 1220.7089 kcal/mol (1218.5405 without restraints) Performing minimization step: 3221. Total energy = 1220.6480 kcal/mol (1218.4800 without restraints) Performing minimization step: 3222. Total energy = 1220.5874 kcal/mol (1218.4198 without restraints) Performing minimization step: 3223. Total energy = 1220.5262 kcal/mol (1218.3592 without restraints) Performing minimization step: 3224. Total energy = 1220.4654 kcal/mol (1218.2989 without restraints) Performing minimization step: 3225. Total energy = 1220.4046 kcal/mol (1218.2385 without restraints) Performing minimization step: 3226. Total energy = 1220.3439 kcal/mol (1218.1782 without restraints) Performing minimization step: 3227. Total energy = 1220.2834 kcal/mol (1218.1182 without restraints) Performing minimization step: 3228. Total energy = 1220.2225 kcal/mol (1218.0577 without restraints) Performing minimization step: 3229. Total energy = 1220.1618 kcal/mol (1217.9975 without restraints) Performing minimization step: 3230. Total energy = 1220.1010 kcal/mol (1217.9371 without restraints) Performing minimization step: 3231. Total energy = 1220.0403 kcal/mol (1217.8769 without restraints) Performing minimization step: 3232. Total energy = 1219.9794 kcal/mol (1217.8165 without restraints) Performing minimization step: 3233. Total energy = 1219.9189 kcal/mol (1217.7564 without restraints) Performing minimization step: 3234. Total energy = 1219.8585 kcal/mol (1217.6964 without restraints) Performing minimization step: 3235. Total energy = 1219.7980 kcal/mol (1217.6364 without restraints) Performing minimization step: 3236. Total energy = 1219.7374 kcal/mol (1217.5763 without restraints) Performing minimization step: 3237. Total energy = 1219.6767 kcal/mol (1217.5161 without restraints) Performing minimization step: 3238. Total energy = 1219.6163 kcal/mol (1217.4560 without restraints) Performing minimization step: 3239. Total energy = 1219.5558 kcal/mol (1217.3960 without restraints) Performing minimization step: 3240. Total energy = 1219.4955 kcal/mol (1217.3361 without restraints) Performing minimization step: 3241. Total energy = 1219.4348 kcal/mol (1217.2759 without restraints) Performing minimization step: 3242. Total energy = 1219.3744 kcal/mol (1217.2160 without restraints) Performing minimization step: 3243. Total energy = 1219.3138 kcal/mol (1217.1558 without restraints) Performing minimization step: 3244. Total energy = 1219.2535 kcal/mol (1217.0959 without restraints) Performing minimization step: 3245. Total energy = 1219.1932 kcal/mol (1217.0361 without restraints) Performing minimization step: 3246. Total energy = 1219.1326 kcal/mol (1216.9758 without restraints) Performing minimization step: 3247. Total energy = 1219.0722 kcal/mol (1216.9160 without restraints) Performing minimization step: 3248. Total energy = 1219.0121 kcal/mol (1216.8564 without restraints) Performing minimization step: 3249. Total energy = 1218.9520 kcal/mol (1216.7967 without restraints) Performing minimization step: 3250. Total energy = 1218.8918 kcal/mol (1216.7369 without restraints) Performing minimization step: 3251. Total energy = 1218.8316 kcal/mol (1216.6772 without restraints) Performing minimization step: 3252. Total energy = 1218.7712 kcal/mol (1216.6172 without restraints) Performing minimization step: 3253. Total energy = 1218.7109 kcal/mol (1216.5574 without restraints) Performing minimization step: 3254. Total energy = 1218.6512 kcal/mol (1216.4981 without restraints) Performing minimization step: 3255. Total energy = 1218.5911 kcal/mol (1216.4385 without restraints) Performing minimization step: 3256. Total energy = 1218.5311 kcal/mol (1216.3789 without restraints) Performing minimization step: 3257. Total energy = 1218.4713 kcal/mol (1216.3195 without restraints) Performing minimization step: 3258. Total energy = 1218.4112 kcal/mol (1216.2597 without restraints) Performing minimization step: 3259. Total energy = 1218.3511 kcal/mol (1216.2002 without restraints) Performing minimization step: 3260. Total energy = 1218.2912 kcal/mol (1216.1407 without restraints) Performing minimization step: 3261. Total energy = 1218.2313 kcal/mol (1216.0813 without restraints) Performing minimization step: 3262. Total energy = 1218.1713 kcal/mol (1216.0218 without restraints) Performing minimization step: 3263. Total energy = 1218.1115 kcal/mol (1215.9624 without restraints) Performing minimization step: 3264. Total energy = 1218.0514 kcal/mol (1215.9027 without restraints) Performing minimization step: 3265. Total energy = 1217.9916 kcal/mol (1215.8434 without restraints) Performing minimization step: 3266. Total energy = 1217.9318 kcal/mol (1215.7840 without restraints) Performing minimization step: 3267. Total energy = 1217.8721 kcal/mol (1215.7247 without restraints) Performing minimization step: 3268. Total energy = 1217.8123 kcal/mol (1215.6653 without restraints) Performing minimization step: 3269. Total energy = 1217.7525 kcal/mol (1215.6060 without restraints) Performing minimization step: 3270. Total energy = 1217.6925 kcal/mol (1215.5463 without restraints) Performing minimization step: 3271. Total energy = 1217.6327 kcal/mol (1215.4871 without restraints) Performing minimization step: 3272. Total energy = 1217.5731 kcal/mol (1215.4279 without restraints) Performing minimization step: 3273. Total energy = 1217.5135 kcal/mol (1215.3687 without restraints) Performing minimization step: 3274. Total energy = 1217.4538 kcal/mol (1215.3095 without restraints) Performing minimization step: 3275. Total energy = 1217.3940 kcal/mol (1215.2501 without restraints) Performing minimization step: 3276. Total energy = 1217.3346 kcal/mol (1215.1912 without restraints) Performing minimization step: 3277. Total energy = 1217.2751 kcal/mol (1215.1321 without restraints) Performing minimization step: 3278. Total energy = 1217.2158 kcal/mol (1215.0731 without restraints) Performing minimization step: 3279. Total energy = 1217.1560 kcal/mol (1215.0139 without restraints) Performing minimization step: 3280. Total energy = 1217.0964 kcal/mol (1214.9547 without restraints) Performing minimization step: 3281. Total energy = 1217.0370 kcal/mol (1214.8957 without restraints) Performing minimization step: 3282. Total energy = 1216.9776 kcal/mol (1214.8368 without restraints) Performing minimization step: 3283. Total energy = 1216.9182 kcal/mol (1214.7778 without restraints) Performing minimization step: 3284. Total energy = 1216.8588 kcal/mol (1214.7189 without restraints) Performing minimization step: 3285. Total energy = 1216.7996 kcal/mol (1214.6601 without restraints) Performing minimization step: 3286. Total energy = 1216.7401 kcal/mol (1214.6010 without restraints) Performing minimization step: 3287. Total energy = 1216.6808 kcal/mol (1214.5421 without restraints) Performing minimization step: 3288. Total energy = 1216.6215 kcal/mol (1214.4833 without restraints) Performing minimization step: 3289. Total energy = 1216.5622 kcal/mol (1214.4244 without restraints) Performing minimization step: 3290. Total energy = 1216.5030 kcal/mol (1214.3656 without restraints) Performing minimization step: 3291. Total energy = 1216.4439 kcal/mol (1214.3070 without restraints) Performing minimization step: 3292. Total energy = 1216.3847 kcal/mol (1214.2482 without restraints) Performing minimization step: 3293. Total energy = 1216.3256 kcal/mol (1214.1895 without restraints) Performing minimization step: 3294. Total energy = 1216.2659 kcal/mol (1214.1303 without restraints) Performing minimization step: 3295. Total energy = 1216.2068 kcal/mol (1214.0716 without restraints) Performing minimization step: 3296. Total energy = 1216.1477 kcal/mol (1214.0129 without restraints) Performing minimization step: 3297. Total energy = 1216.0886 kcal/mol (1213.9543 without restraints) Performing minimization step: 3298. Total energy = 1216.0294 kcal/mol (1213.8955 without restraints) Performing minimization step: 3299. Total energy = 1215.9701 kcal/mol (1213.8367 without restraints) Performing minimization step: 3300. Total energy = 1215.9109 kcal/mol (1213.7779 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 1215.8520 kcal/mol (1213.7194 without restraints) Performing minimization step: 3302. Total energy = 1215.7930 kcal/mol (1213.6608 without restraints) Performing minimization step: 3303. Total energy = 1215.7340 kcal/mol (1213.6023 without restraints) Performing minimization step: 3304. Total energy = 1215.6750 kcal/mol (1213.5436 without restraints) Performing minimization step: 3305. Total energy = 1215.6159 kcal/mol (1213.4850 without restraints) Performing minimization step: 3306. Total energy = 1215.5569 kcal/mol (1213.4264 without restraints) Performing minimization step: 3307. Total energy = 1215.4978 kcal/mol (1213.3678 without restraints) Performing minimization step: 3308. Total energy = 1215.4390 kcal/mol (1213.3094 without restraints) Performing minimization step: 3309. Total energy = 1215.3800 kcal/mol (1213.2508 without restraints) Performing minimization step: 3310. Total energy = 1215.3215 kcal/mol (1213.1927 without restraints) Performing minimization step: 3311. Total energy = 1215.2628 kcal/mol (1213.1344 without restraints) Performing minimization step: 3312. Total energy = 1215.2042 kcal/mol (1213.0764 without restraints) Performing minimization step: 3313. Total energy = 1215.1456 kcal/mol (1213.0181 without restraints) Performing minimization step: 3314. Total energy = 1215.0869 kcal/mol (1212.9598 without restraints) Performing minimization step: 3315. Total energy = 1215.0283 kcal/mol (1212.9016 without restraints) Performing minimization step: 3316. Total energy = 1214.9695 kcal/mol (1212.8432 without restraints) Performing minimization step: 3317. Total energy = 1214.9109 kcal/mol (1212.7851 without restraints) Performing minimization step: 3318. Total energy = 1214.8521 kcal/mol (1212.7268 without restraints) Performing minimization step: 3319. Total energy = 1214.7935 kcal/mol (1212.6684 without restraints) Performing minimization step: 3320. Total energy = 1214.7348 kcal/mol (1212.6103 without restraints) Performing minimization step: 3321. Total energy = 1214.6762 kcal/mol (1212.5521 without restraints) Performing minimization step: 3322. Total energy = 1214.6177 kcal/mol (1212.4940 without restraints) Performing minimization step: 3323. Total energy = 1214.5595 kcal/mol (1212.4362 without restraints) Performing minimization step: 3324. Total energy = 1214.5011 kcal/mol (1212.3783 without restraints) Performing minimization step: 3325. Total energy = 1214.4429 kcal/mol (1212.3205 without restraints) Performing minimization step: 3326. Total energy = 1214.3848 kcal/mol (1212.2627 without restraints) Performing minimization step: 3327. Total energy = 1214.3262 kcal/mol (1212.2047 without restraints) Performing minimization step: 3328. Total energy = 1214.2679 kcal/mol (1212.1468 without restraints) Performing minimization step: 3329. Total energy = 1214.2096 kcal/mol (1212.0889 without restraints) Performing minimization step: 3330. Total energy = 1214.1513 kcal/mol (1212.0309 without restraints) Performing minimization step: 3331. Total energy = 1214.0932 kcal/mol (1211.9733 without restraints) Performing minimization step: 3332. Total energy = 1214.0349 kcal/mol (1211.9153 without restraints) Performing minimization step: 3333. Total energy = 1213.9766 kcal/mol (1211.8575 without restraints) Performing minimization step: 3334. Total energy = 1213.9186 kcal/mol (1211.8000 without restraints) Performing minimization step: 3335. Total energy = 1213.8605 kcal/mol (1211.7423 without restraints) Performing minimization step: 3336. Total energy = 1213.8024 kcal/mol (1211.6846 without restraints) Performing minimization step: 3337. Total energy = 1213.7446 kcal/mol (1211.6272 without restraints) Performing minimization step: 3338. Total energy = 1213.6865 kcal/mol (1211.5695 without restraints) Performing minimization step: 3339. Total energy = 1213.6284 kcal/mol (1211.5118 without restraints) Performing minimization step: 3340. Total energy = 1213.5703 kcal/mol (1211.4541 without restraints) Performing minimization step: 3341. Total energy = 1213.5122 kcal/mol (1211.3965 without restraints) Performing minimization step: 3342. Total energy = 1213.4542 kcal/mol (1211.3389 without restraints) Performing minimization step: 3343. Total energy = 1213.3962 kcal/mol (1211.2812 without restraints) Performing minimization step: 3344. Total energy = 1213.3381 kcal/mol (1211.2236 without restraints) Performing minimization step: 3345. Total energy = 1213.2802 kcal/mol (1211.1661 without restraints) Performing minimization step: 3346. Total energy = 1213.2220 kcal/mol (1211.1084 without restraints) Performing minimization step: 3347. Total energy = 1213.1642 kcal/mol (1211.0509 without restraints) Performing minimization step: 3348. Total energy = 1213.1063 kcal/mol (1210.9934 without restraints) Performing minimization step: 3349. Total energy = 1213.0484 kcal/mol (1210.9360 without restraints) Performing minimization step: 3350. Total energy = 1212.9910 kcal/mol (1210.8790 without restraints) Performing minimization step: 3351. Total energy = 1212.9330 kcal/mol (1210.8214 without restraints) Performing minimization step: 3352. Total energy = 1212.8754 kcal/mol (1210.7643 without restraints) Performing minimization step: 3353. Total energy = 1212.8178 kcal/mol (1210.7070 without restraints) Performing minimization step: 3354. Total energy = 1212.7601 kcal/mol (1210.6497 without restraints) Performing minimization step: 3355. Total energy = 1212.7024 kcal/mol (1210.5925 without restraints) Performing minimization step: 3356. Total energy = 1212.6449 kcal/mol (1210.5354 without restraints) Performing minimization step: 3357. Total energy = 1212.5869 kcal/mol (1210.4777 without restraints) Performing minimization step: 3358. Total energy = 1212.5290 kcal/mol (1210.4203 without restraints) Performing minimization step: 3359. Total energy = 1212.4714 kcal/mol (1210.3631 without restraints) Performing minimization step: 3360. Total energy = 1212.4138 kcal/mol (1210.3059 without restraints) Performing minimization step: 3361. Total energy = 1212.3563 kcal/mol (1210.2488 without restraints) Performing minimization step: 3362. Total energy = 1212.2987 kcal/mol (1210.1916 without restraints) Performing minimization step: 3363. Total energy = 1212.2411 kcal/mol (1210.1346 without restraints) Performing minimization step: 3364. Total energy = 1212.1840 kcal/mol (1210.0777 without restraints) Performing minimization step: 3365. Total energy = 1212.1264 kcal/mol (1210.0206 without restraints) Performing minimization step: 3366. Total energy = 1212.0690 kcal/mol (1209.9636 without restraints) Performing minimization step: 3367. Total energy = 1212.0117 kcal/mol (1209.9068 without restraints) Performing minimization step: 3368. Total energy = 1211.9544 kcal/mol (1209.8498 without restraints) Performing minimization step: 3369. Total energy = 1211.8971 kcal/mol (1209.7929 without restraints) Performing minimization step: 3370. Total energy = 1211.8398 kcal/mol (1209.7360 without restraints) Performing minimization step: 3371. Total energy = 1211.7824 kcal/mol (1209.6790 without restraints) Performing minimization step: 3372. Total energy = 1211.7251 kcal/mol (1209.6221 without restraints) Performing minimization step: 3373. Total energy = 1211.6681 kcal/mol (1209.5655 without restraints) Performing minimization step: 3374. Total energy = 1211.6108 kcal/mol (1209.5086 without restraints) Performing minimization step: 3375. Total energy = 1211.5536 kcal/mol (1209.4518 without restraints) Performing minimization step: 3376. Total energy = 1211.4962 kcal/mol (1209.3948 without restraints) Performing minimization step: 3377. Total energy = 1211.4388 kcal/mol (1209.3378 without restraints) Performing minimization step: 3378. Total energy = 1211.3816 kcal/mol (1209.2811 without restraints) Performing minimization step: 3379. Total energy = 1211.3243 kcal/mol (1209.2241 without restraints) Performing minimization step: 3380. Total energy = 1211.2672 kcal/mol (1209.1674 without restraints) Performing minimization step: 3381. Total energy = 1211.2101 kcal/mol (1209.1107 without restraints) Performing minimization step: 3382. Total energy = 1211.1530 kcal/mol (1209.0540 without restraints) Performing minimization step: 3383. Total energy = 1211.0960 kcal/mol (1208.9974 without restraints) Performing minimization step: 3384. Total energy = 1211.0389 kcal/mol (1208.9407 without restraints) Performing minimization step: 3385. Total energy = 1210.9819 kcal/mol (1208.8841 without restraints) Performing minimization step: 3386. Total energy = 1210.9249 kcal/mol (1208.8275 without restraints) Performing minimization step: 3387. Total energy = 1210.8677 kcal/mol (1208.7707 without restraints) Performing minimization step: 3388. Total energy = 1210.8110 kcal/mol (1208.7145 without restraints) Performing minimization step: 3389. Total energy = 1210.7540 kcal/mol (1208.6578 without restraints) Performing minimization step: 3390. Total energy = 1210.6972 kcal/mol (1208.6014 without restraints) Performing minimization step: 3391. Total energy = 1210.6401 kcal/mol (1208.5448 without restraints) Performing minimization step: 3392. Total energy = 1210.5833 kcal/mol (1208.4883 without restraints) Performing minimization step: 3393. Total energy = 1210.5265 kcal/mol (1208.4319 without restraints) Performing minimization step: 3394. Total energy = 1210.4697 kcal/mol (1208.3755 without restraints) Performing minimization step: 3395. Total energy = 1210.4125 kcal/mol (1208.3187 without restraints) Performing minimization step: 3396. Total energy = 1210.3557 kcal/mol (1208.2624 without restraints) Performing minimization step: 3397. Total energy = 1210.2990 kcal/mol (1208.2060 without restraints) Performing minimization step: 3398. Total energy = 1210.2423 kcal/mol (1208.1497 without restraints) Performing minimization step: 3399. Total energy = 1210.1854 kcal/mol (1208.0932 without restraints) Performing minimization step: 3400. Total energy = 1210.1288 kcal/mol (1208.0370 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 1210.0721 kcal/mol (1207.9808 without restraints) Performing minimization step: 3402. Total energy = 1210.0151 kcal/mol (1207.9241 without restraints) Performing minimization step: 3403. Total energy = 1209.9583 kcal/mol (1207.8677 without restraints) Performing minimization step: 3404. Total energy = 1209.9018 kcal/mol (1207.8117 without restraints) Performing minimization step: 3405. Total energy = 1209.8454 kcal/mol (1207.7556 without restraints) Performing minimization step: 3406. Total energy = 1209.7891 kcal/mol (1207.6997 without restraints) Performing minimization step: 3407. Total energy = 1209.7326 kcal/mol (1207.6436 without restraints) Performing minimization step: 3408. Total energy = 1209.6761 kcal/mol (1207.5875 without restraints) Performing minimization step: 3409. Total energy = 1209.6192 kcal/mol (1207.5310 without restraints) Performing minimization step: 3410. Total energy = 1209.5628 kcal/mol (1207.4750 without restraints) Performing minimization step: 3411. Total energy = 1209.5064 kcal/mol (1207.4189 without restraints) Performing minimization step: 3412. Total energy = 1209.4499 kcal/mol (1207.3629 without restraints) Performing minimization step: 3413. Total energy = 1209.3937 kcal/mol (1207.3071 without restraints) Performing minimization step: 3414. Total energy = 1209.3374 kcal/mol (1207.2511 without restraints) Performing minimization step: 3415. Total energy = 1209.2810 kcal/mol (1207.1952 without restraints) Performing minimization step: 3416. Total energy = 1209.2252 kcal/mol (1207.1397 without restraints) Performing minimization step: 3417. Total energy = 1209.1691 kcal/mol (1207.0841 without restraints) Performing minimization step: 3418. Total energy = 1209.1131 kcal/mol (1207.0284 without restraints) Performing minimization step: 3419. Total energy = 1209.0568 kcal/mol (1206.9726 without restraints) Performing minimization step: 3420. Total energy = 1209.0006 kcal/mol (1206.9168 without restraints) Performing minimization step: 3421. Total energy = 1208.9445 kcal/mol (1206.8610 without restraints) Performing minimization step: 3422. Total energy = 1208.8883 kcal/mol (1206.8052 without restraints) Performing minimization step: 3423. Total energy = 1208.8322 kcal/mol (1206.7494 without restraints) Performing minimization step: 3424. Total energy = 1208.7758 kcal/mol (1206.6935 without restraints) Performing minimization step: 3425. Total energy = 1208.7198 kcal/mol (1206.6379 without restraints) Performing minimization step: 3426. Total energy = 1208.6637 kcal/mol (1206.5822 without restraints) Performing minimization step: 3427. Total energy = 1208.6077 kcal/mol (1206.5265 without restraints) Performing minimization step: 3428. Total energy = 1208.5518 kcal/mol (1206.4710 without restraints) Performing minimization step: 3429. Total energy = 1208.4956 kcal/mol (1206.4153 without restraints) Performing minimization step: 3430. Total energy = 1208.4393 kcal/mol (1206.3593 without restraints) Performing minimization step: 3431. Total energy = 1208.3833 kcal/mol (1206.3037 without restraints) Performing minimization step: 3432. Total energy = 1208.3275 kcal/mol (1206.2483 without restraints) Performing minimization step: 3433. Total energy = 1208.2714 kcal/mol (1206.1925 without restraints) Performing minimization step: 3434. Total energy = 1208.2155 kcal/mol (1206.1370 without restraints) Performing minimization step: 3435. Total energy = 1208.1596 kcal/mol (1206.0816 without restraints) Performing minimization step: 3436. Total energy = 1208.1038 kcal/mol (1206.0261 without restraints) Performing minimization step: 3437. Total energy = 1208.0484 kcal/mol (1205.9712 without restraints) Performing minimization step: 3438. Total energy = 1207.9929 kcal/mol (1205.9160 without restraints) Performing minimization step: 3439. Total energy = 1207.9371 kcal/mol (1205.8606 without restraints) Performing minimization step: 3440. Total energy = 1207.8816 kcal/mol (1205.8054 without restraints) Performing minimization step: 3441. Total energy = 1207.8256 kcal/mol (1205.7499 without restraints) Performing minimization step: 3442. Total energy = 1207.7701 kcal/mol (1205.6947 without restraints) Performing minimization step: 3443. Total energy = 1207.7143 kcal/mol (1205.6392 without restraints) Performing minimization step: 3444. Total energy = 1207.6583 kcal/mol (1205.5837 without restraints) Performing minimization step: 3445. Total energy = 1207.6027 kcal/mol (1205.5285 without restraints) Performing minimization step: 3446. Total energy = 1207.5471 kcal/mol (1205.4733 without restraints) Performing minimization step: 3447. Total energy = 1207.4915 kcal/mol (1205.4180 without restraints) Performing minimization step: 3448. Total energy = 1207.4357 kcal/mol (1205.3626 without restraints) Performing minimization step: 3449. Total energy = 1207.3801 kcal/mol (1205.3074 without restraints) Performing minimization step: 3450. Total energy = 1207.3245 kcal/mol (1205.2522 without restraints) Performing minimization step: 3451. Total energy = 1207.2689 kcal/mol (1205.1970 without restraints) Performing minimization step: 3452. Total energy = 1207.2134 kcal/mol (1205.1419 without restraints) Performing minimization step: 3453. Total energy = 1207.1582 kcal/mol (1205.0870 without restraints) Performing minimization step: 3454. Total energy = 1207.1025 kcal/mol (1205.0317 without restraints) Performing minimization step: 3455. Total energy = 1207.0471 kcal/mol (1204.9767 without restraints) Performing minimization step: 3456. Total energy = 1206.9915 kcal/mol (1204.9215 without restraints) Performing minimization step: 3457. Total energy = 1206.9361 kcal/mol (1204.8665 without restraints) Performing minimization step: 3458. Total energy = 1206.8806 kcal/mol (1204.8113 without restraints) Performing minimization step: 3459. Total energy = 1206.8255 kcal/mol (1204.7566 without restraints) Performing minimization step: 3460. Total energy = 1206.7702 kcal/mol (1204.7017 without restraints) Performing minimization step: 3461. Total energy = 1206.7146 kcal/mol (1204.6464 without restraints) Performing minimization step: 3462. Total energy = 1206.6591 kcal/mol (1204.5914 without restraints) Performing minimization step: 3463. Total energy = 1206.6039 kcal/mol (1204.5365 without restraints) Performing minimization step: 3464. Total energy = 1206.5487 kcal/mol (1204.4817 without restraints) Performing minimization step: 3465. Total energy = 1206.4934 kcal/mol (1204.4268 without restraints) Performing minimization step: 3466. Total energy = 1206.4383 kcal/mol (1204.3720 without restraints) Performing minimization step: 3467. Total energy = 1206.3831 kcal/mol (1204.3173 without restraints) Performing minimization step: 3468. Total energy = 1206.3281 kcal/mol (1204.2627 without restraints) Performing minimization step: 3469. Total energy = 1206.2729 kcal/mol (1204.2077 without restraints) Performing minimization step: 3470. Total energy = 1206.2177 kcal/mol (1204.1530 without restraints) Performing minimization step: 3471. Total energy = 1206.1633 kcal/mol (1204.0989 without restraints) Performing minimization step: 3472. Total energy = 1206.1079 kcal/mol (1204.0439 without restraints) Performing minimization step: 3473. Total energy = 1206.0529 kcal/mol (1203.9893 without restraints) Performing minimization step: 3474. Total energy = 1205.9979 kcal/mol (1203.9346 without restraints) Performing minimization step: 3475. Total energy = 1205.9429 kcal/mol (1203.8800 without restraints) Performing minimization step: 3476. Total energy = 1205.8878 kcal/mol (1203.8253 without restraints) Performing minimization step: 3477. Total energy = 1205.8328 kcal/mol (1203.7706 without restraints) Performing minimization step: 3478. Total energy = 1205.7777 kcal/mol (1203.7160 without restraints) Performing minimization step: 3479. Total energy = 1205.7228 kcal/mol (1203.6614 without restraints) Performing minimization step: 3480. Total energy = 1205.6679 kcal/mol (1203.6069 without restraints) Performing minimization step: 3481. Total energy = 1205.6132 kcal/mol (1203.5526 without restraints) Performing minimization step: 3482. Total energy = 1205.5583 kcal/mol (1203.4981 without restraints) Performing minimization step: 3483. Total energy = 1205.5035 kcal/mol (1203.4436 without restraints) Performing minimization step: 3484. Total energy = 1205.4487 kcal/mol (1203.3891 without restraints) Performing minimization step: 3485. Total energy = 1205.3936 kcal/mol (1203.3344 without restraints) Performing minimization step: 3486. Total energy = 1205.3388 kcal/mol (1203.2800 without restraints) Performing minimization step: 3487. Total energy = 1205.2840 kcal/mol (1203.2256 without restraints) Performing minimization step: 3488. Total energy = 1205.2293 kcal/mol (1203.1713 without restraints) Performing minimization step: 3489. Total energy = 1205.1746 kcal/mol (1203.1169 without restraints) Performing minimization step: 3490. Total energy = 1205.1199 kcal/mol (1203.0626 without restraints) Performing minimization step: 3491. Total energy = 1205.0652 kcal/mol (1203.0083 without restraints) Performing minimization step: 3492. Total energy = 1205.0106 kcal/mol (1202.9540 without restraints) Performing minimization step: 3493. Total energy = 1204.9558 kcal/mol (1202.8996 without restraints) Performing minimization step: 3494. Total energy = 1204.9012 kcal/mol (1202.8454 without restraints) Performing minimization step: 3495. Total energy = 1204.8463 kcal/mol (1202.7909 without restraints) Performing minimization step: 3496. Total energy = 1204.7919 kcal/mol (1202.7369 without restraints) Performing minimization step: 3497. Total energy = 1204.7374 kcal/mol (1202.6827 without restraints) Performing minimization step: 3498. Total energy = 1204.6826 kcal/mol (1202.6283 without restraints) Performing minimization step: 3499. Total energy = 1204.6281 kcal/mol (1202.5741 without restraints) Performing minimization step: 3500. Total energy = 1204.5736 kcal/mol (1202.5200 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 1204.5191 kcal/mol (1202.4659 without restraints) Performing minimization step: 3502. Total energy = 1204.4648 kcal/mol (1202.4119 without restraints) Performing minimization step: 3503. Total energy = 1204.4103 kcal/mol (1202.3578 without restraints) Performing minimization step: 3504. Total energy = 1204.3562 kcal/mol (1202.3041 without restraints) Performing minimization step: 3505. Total energy = 1204.3015 kcal/mol (1202.2497 without restraints) Performing minimization step: 3506. Total energy = 1204.2471 kcal/mol (1202.1958 without restraints) Performing minimization step: 3507. Total energy = 1204.1929 kcal/mol (1202.1418 without restraints) Performing minimization step: 3508. Total energy = 1204.1386 kcal/mol (1202.0879 without restraints) Performing minimization step: 3509. Total energy = 1204.0843 kcal/mol (1202.0339 without restraints) Performing minimization step: 3510. Total energy = 1204.0300 kcal/mol (1201.9800 without restraints) Performing minimization step: 3511. Total energy = 1203.9756 kcal/mol (1201.9260 without restraints) Performing minimization step: 3512. Total energy = 1203.9212 kcal/mol (1201.8719 without restraints) Performing minimization step: 3513. Total energy = 1203.8667 kcal/mol (1201.8179 without restraints) Performing minimization step: 3514. Total energy = 1203.8125 kcal/mol (1201.7640 without restraints) Performing minimization step: 3515. Total energy = 1203.7582 kcal/mol (1201.7100 without restraints) Performing minimization step: 3516. Total energy = 1203.7040 kcal/mol (1201.6562 without restraints) Performing minimization step: 3517. Total energy = 1203.6498 kcal/mol (1201.6024 without restraints) Performing minimization step: 3518. Total energy = 1203.5958 kcal/mol (1201.5488 without restraints) Performing minimization step: 3519. Total energy = 1203.5419 kcal/mol (1201.4953 without restraints) Performing minimization step: 3520. Total energy = 1203.4881 kcal/mol (1201.4418 without restraints) Performing minimization step: 3521. Total energy = 1203.4341 kcal/mol (1201.3881 without restraints) Performing minimization step: 3522. Total energy = 1203.3801 kcal/mol (1201.3344 without restraints) Performing minimization step: 3523. Total energy = 1203.3260 kcal/mol (1201.2808 without restraints) Performing minimization step: 3524. Total energy = 1203.2717 kcal/mol (1201.2267 without restraints) Performing minimization step: 3525. Total energy = 1203.2174 kcal/mol (1201.1729 without restraints) Performing minimization step: 3526. Total energy = 1203.1635 kcal/mol (1201.1193 without restraints) Performing minimization step: 3527. Total energy = 1203.1096 kcal/mol (1201.0657 without restraints) Performing minimization step: 3528. Total energy = 1203.0557 kcal/mol (1201.0122 without restraints) Performing minimization step: 3529. Total energy = 1203.0019 kcal/mol (1200.9589 without restraints) Performing minimization step: 3530. Total energy = 1202.9484 kcal/mol (1200.9056 without restraints) Performing minimization step: 3531. Total energy = 1202.8945 kcal/mol (1200.8521 without restraints) Performing minimization step: 3532. Total energy = 1202.8407 kcal/mol (1200.7987 without restraints) Performing minimization step: 3533. Total energy = 1202.7867 kcal/mol (1200.7450 without restraints) Performing minimization step: 3534. Total energy = 1202.7329 kcal/mol (1200.6915 without restraints) Performing minimization step: 3535. Total energy = 1202.6787 kcal/mol (1200.6376 without restraints) Performing minimization step: 3536. Total energy = 1202.6249 kcal/mol (1200.5843 without restraints) Performing minimization step: 3537. Total energy = 1202.5712 kcal/mol (1200.5310 without restraints) Performing minimization step: 3538. Total energy = 1202.5169 kcal/mol (1200.4770 without restraints) Performing minimization step: 3539. Total energy = 1202.4632 kcal/mol (1200.4237 without restraints) Performing minimization step: 3540. Total energy = 1202.4097 kcal/mol (1200.3706 without restraints) Performing minimization step: 3541. Total energy = 1202.3561 kcal/mol (1200.3172 without restraints) Performing minimization step: 3542. Total energy = 1202.3027 kcal/mol (1200.2642 without restraints) Performing minimization step: 3543. Total energy = 1202.2491 kcal/mol (1200.2110 without restraints) Performing minimization step: 3544. Total energy = 1202.1952 kcal/mol (1200.1575 without restraints) Performing minimization step: 3545. Total energy = 1202.1417 kcal/mol (1200.1043 without restraints) Performing minimization step: 3546. Total energy = 1202.0882 kcal/mol (1200.0511 without restraints) Performing minimization step: 3547. Total energy = 1202.0346 kcal/mol (1199.9979 without restraints) Performing minimization step: 3548. Total energy = 1201.9810 kcal/mol (1199.9446 without restraints) Performing minimization step: 3549. Total energy = 1201.9273 kcal/mol (1199.8912 without restraints) Performing minimization step: 3550. Total energy = 1201.8737 kcal/mol (1199.8381 without restraints) Performing minimization step: 3551. Total energy = 1201.8205 kcal/mol (1199.7852 without restraints) Performing minimization step: 3552. Total energy = 1201.7670 kcal/mol (1199.7320 without restraints) Performing minimization step: 3553. Total energy = 1201.7135 kcal/mol (1199.6789 without restraints) Performing minimization step: 3554. Total energy = 1201.6600 kcal/mol (1199.6259 without restraints) Performing minimization step: 3555. Total energy = 1201.6064 kcal/mol (1199.5725 without restraints) Performing minimization step: 3556. Total energy = 1201.5530 kcal/mol (1199.5195 without restraints) Performing minimization step: 3557. Total energy = 1201.4997 kcal/mol (1199.4665 without restraints) Performing minimization step: 3558. Total energy = 1201.4465 kcal/mol (1199.4136 without restraints) Performing minimization step: 3559. Total energy = 1201.3931 kcal/mol (1199.3606 without restraints) Performing minimization step: 3560. Total energy = 1201.3399 kcal/mol (1199.3077 without restraints) Performing minimization step: 3561. Total energy = 1201.2868 kcal/mol (1199.2550 without restraints) Performing minimization step: 3562. Total energy = 1201.2336 kcal/mol (1199.2021 without restraints) Performing minimization step: 3563. Total energy = 1201.1804 kcal/mol (1199.1493 without restraints) Performing minimization step: 3564. Total energy = 1201.1269 kcal/mol (1199.0961 without restraints) Performing minimization step: 3565. Total energy = 1201.0737 kcal/mol (1199.0433 without restraints) Performing minimization step: 3566. Total energy = 1201.0204 kcal/mol (1198.9903 without restraints) Performing minimization step: 3567. Total energy = 1200.9673 kcal/mol (1198.9375 without restraints) Performing minimization step: 3568. Total energy = 1200.9141 kcal/mol (1198.8848 without restraints) Performing minimization step: 3569. Total energy = 1200.8609 kcal/mol (1198.8318 without restraints) Performing minimization step: 3570. Total energy = 1200.8080 kcal/mol (1198.7793 without restraints) Performing minimization step: 3571. Total energy = 1200.7550 kcal/mol (1198.7268 without restraints) Performing minimization step: 3572. Total energy = 1200.7021 kcal/mol (1198.6741 without restraints) Performing minimization step: 3573. Total energy = 1200.6491 kcal/mol (1198.6214 without restraints) Performing minimization step: 3574. Total energy = 1200.5961 kcal/mol (1198.5688 without restraints) Performing minimization step: 3575. Total energy = 1200.5431 kcal/mol (1198.5161 without restraints) Performing minimization step: 3576. Total energy = 1200.4901 kcal/mol (1198.4635 without restraints) Performing minimization step: 3577. Total energy = 1200.4372 kcal/mol (1198.4109 without restraints) Performing minimization step: 3578. Total energy = 1200.3842 kcal/mol (1198.3583 without restraints) Performing minimization step: 3579. Total energy = 1200.3314 kcal/mol (1198.3058 without restraints) Performing minimization step: 3580. Total energy = 1200.2786 kcal/mol (1198.2534 without restraints) Performing minimization step: 3581. Total energy = 1200.2258 kcal/mol (1198.2009 without restraints) Performing minimization step: 3582. Total energy = 1200.1726 kcal/mol (1198.1479 without restraints) Performing minimization step: 3583. Total energy = 1200.1197 kcal/mol (1198.0954 without restraints) Performing minimization step: 3584. Total energy = 1200.0668 kcal/mol (1198.0429 without restraints) Performing minimization step: 3585. Total energy = 1200.0141 kcal/mol (1197.9905 without restraints) Performing minimization step: 3586. Total energy = 1199.9613 kcal/mol (1197.9381 without restraints) Performing minimization step: 3587. Total energy = 1199.9085 kcal/mol (1197.8856 without restraints) Performing minimization step: 3588. Total energy = 1199.8557 kcal/mol (1197.8332 without restraints) Performing minimization step: 3589. Total energy = 1199.8030 kcal/mol (1197.7808 without restraints) Performing minimization step: 3590. Total energy = 1199.7501 kcal/mol (1197.7282 without restraints) Performing minimization step: 3591. Total energy = 1199.6974 kcal/mol (1197.6759 without restraints) Performing minimization step: 3592. Total energy = 1199.6448 kcal/mol (1197.6236 without restraints) Performing minimization step: 3593. Total energy = 1199.5921 kcal/mol (1197.5713 without restraints) Performing minimization step: 3594. Total energy = 1199.5391 kcal/mol (1197.5186 without restraints) Performing minimization step: 3595. Total energy = 1199.4865 kcal/mol (1197.4664 without restraints) Performing minimization step: 3596. Total energy = 1199.4340 kcal/mol (1197.4141 without restraints) Performing minimization step: 3597. Total energy = 1199.3814 kcal/mol (1197.3619 without restraints) Performing minimization step: 3598. Total energy = 1199.3289 kcal/mol (1197.3097 without restraints) Performing minimization step: 3599. Total energy = 1199.2763 kcal/mol (1197.2575 without restraints) Performing minimization step: 3600. Total energy = 1199.2238 kcal/mol (1197.2053 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 1199.1713 kcal/mol (1197.1531 without restraints) Performing minimization step: 3602. Total energy = 1199.1188 kcal/mol (1197.1010 without restraints) Performing minimization step: 3603. Total energy = 1199.0663 kcal/mol (1197.0489 without restraints) Performing minimization step: 3604. Total energy = 1199.0143 kcal/mol (1196.9972 without restraints) Performing minimization step: 3605. Total energy = 1198.9621 kcal/mol (1196.9453 without restraints) Performing minimization step: 3606. Total energy = 1198.9097 kcal/mol (1196.8932 without restraints) Performing minimization step: 3607. Total energy = 1198.8571 kcal/mol (1196.8409 without restraints) Performing minimization step: 3608. Total energy = 1198.8047 kcal/mol (1196.7889 without restraints) Performing minimization step: 3609. Total energy = 1198.7525 kcal/mol (1196.7371 without restraints) Performing minimization step: 3610. Total energy = 1198.7003 kcal/mol (1196.6852 without restraints) Performing minimization step: 3611. Total energy = 1198.6482 kcal/mol (1196.6334 without restraints) Performing minimization step: 3612. Total energy = 1198.5959 kcal/mol (1196.5815 without restraints) Performing minimization step: 3613. Total energy = 1198.5434 kcal/mol (1196.5293 without restraints) Performing minimization step: 3614. Total energy = 1198.4910 kcal/mol (1196.4772 without restraints) Performing minimization step: 3615. Total energy = 1198.4387 kcal/mol (1196.4252 without restraints) Performing minimization step: 3616. Total energy = 1198.3865 kcal/mol (1196.3733 without restraints) Performing minimization step: 3617. Total energy = 1198.3341 kcal/mol (1196.3213 without restraints) Performing minimization step: 3618. Total energy = 1198.2817 kcal/mol (1196.2691 without restraints) Performing minimization step: 3619. Total energy = 1198.2295 kcal/mol (1196.2173 without restraints) Performing minimization step: 3620. Total energy = 1198.1773 kcal/mol (1196.1655 without restraints) Performing minimization step: 3621. Total energy = 1198.1254 kcal/mol (1196.1139 without restraints) Performing minimization step: 3622. Total energy = 1198.0734 kcal/mol (1196.0623 without restraints) Performing minimization step: 3623. Total energy = 1198.0211 kcal/mol (1196.0103 without restraints) Performing minimization step: 3624. Total energy = 1197.9691 kcal/mol (1195.9585 without restraints) Performing minimization step: 3625. Total energy = 1197.9170 kcal/mol (1195.9068 without restraints) Performing minimization step: 3626. Total energy = 1197.8649 kcal/mol (1195.8551 without restraints) Performing minimization step: 3627. Total energy = 1197.8127 kcal/mol (1195.8032 without restraints) Performing minimization step: 3628. Total energy = 1197.7607 kcal/mol (1195.7515 without restraints) Performing minimization step: 3629. Total energy = 1197.7087 kcal/mol (1195.6998 without restraints) Performing minimization step: 3630. Total energy = 1197.6571 kcal/mol (1195.6485 without restraints) Performing minimization step: 3631. Total energy = 1197.6051 kcal/mol (1195.5969 without restraints) Performing minimization step: 3632. Total energy = 1197.5532 kcal/mol (1195.5453 without restraints) Performing minimization step: 3633. Total energy = 1197.5010 kcal/mol (1195.4934 without restraints) Performing minimization step: 3634. Total energy = 1197.4490 kcal/mol (1195.4418 without restraints) Performing minimization step: 3635. Total energy = 1197.3976 kcal/mol (1195.3907 without restraints) Performing minimization step: 3636. Total energy = 1197.3457 kcal/mol (1195.3391 without restraints) Performing minimization step: 3637. Total energy = 1197.2940 kcal/mol (1195.2878 without restraints) Performing minimization step: 3638. Total energy = 1197.2422 kcal/mol (1195.2363 without restraints) Performing minimization step: 3639. Total energy = 1197.1904 kcal/mol (1195.1848 without restraints) Performing minimization step: 3640. Total energy = 1197.1386 kcal/mol (1195.1332 without restraints) Performing minimization step: 3641. Total energy = 1197.0867 kcal/mol (1195.0818 without restraints) Performing minimization step: 3642. Total energy = 1197.0350 kcal/mol (1195.0303 without restraints) Performing minimization step: 3643. Total energy = 1196.9831 kcal/mol (1194.9787 without restraints) Performing minimization step: 3644. Total energy = 1196.9313 kcal/mol (1194.9273 without restraints) Performing minimization step: 3645. Total energy = 1196.8796 kcal/mol (1194.8759 without restraints) Performing minimization step: 3646. Total energy = 1196.8278 kcal/mol (1194.8243 without restraints) Performing minimization step: 3647. Total energy = 1196.7760 kcal/mol (1194.7729 without restraints) Performing minimization step: 3648. Total energy = 1196.7246 kcal/mol (1194.7220 without restraints) Performing minimization step: 3649. Total energy = 1196.6731 kcal/mol (1194.6707 without restraints) Performing minimization step: 3650. Total energy = 1196.6216 kcal/mol (1194.6198 without restraints) Performing minimization step: 3651. Total energy = 1196.5702 kcal/mol (1194.5685 without restraints) Performing minimization step: 3652. Total energy = 1196.5186 kcal/mol (1194.5171 without restraints) Performing minimization step: 3653. Total energy = 1196.4670 kcal/mol (1194.4659 without restraints) Performing minimization step: 3654. Total energy = 1196.4154 kcal/mol (1194.4146 without restraints) Performing minimization step: 3655. Total energy = 1196.3635 kcal/mol (1194.3629 without restraints) Performing minimization step: 3656. Total energy = 1196.3118 kcal/mol (1194.3116 without restraints) Performing minimization step: 3657. Total energy = 1196.2604 kcal/mol (1194.2606 without restraints) Performing minimization step: 3658. Total energy = 1196.2091 kcal/mol (1194.2096 without restraints) Performing minimization step: 3659. Total energy = 1196.1572 kcal/mol (1194.1579 without restraints) Performing minimization step: 3660. Total energy = 1196.1058 kcal/mol (1194.1069 without restraints) Performing minimization step: 3661. Total energy = 1196.0543 kcal/mol (1194.0558 without restraints) Performing minimization step: 3662. Total energy = 1196.0029 kcal/mol (1194.0047 without restraints) Performing minimization step: 3663. Total energy = 1195.9515 kcal/mol (1193.9536 without restraints) Performing minimization step: 3664. Total energy = 1195.9000 kcal/mol (1193.9022 without restraints) Performing minimization step: 3665. Total energy = 1195.8484 kcal/mol (1193.8511 without restraints) Performing minimization step: 3666. Total energy = 1195.7971 kcal/mol (1193.8003 without restraints) Performing minimization step: 3667. Total energy = 1195.7457 kcal/mol (1193.7491 without restraints) Performing minimization step: 3668. Total energy = 1195.6942 kcal/mol (1193.6978 without restraints) Performing minimization step: 3669. Total energy = 1195.6429 kcal/mol (1193.6469 without restraints) Performing minimization step: 3670. Total energy = 1195.5916 kcal/mol (1193.5959 without restraints) Performing minimization step: 3671. Total energy = 1195.5402 kcal/mol (1193.5447 without restraints) Performing minimization step: 3672. Total energy = 1195.4885 kcal/mol (1193.4935 without restraints) Performing minimization step: 3673. Total energy = 1195.4373 kcal/mol (1193.4425 without restraints) Performing minimization step: 3674. Total energy = 1195.3860 kcal/mol (1193.3915 without restraints) Performing minimization step: 3675. Total energy = 1195.3347 kcal/mol (1193.3406 without restraints) Performing minimization step: 3676. Total energy = 1195.2837 kcal/mol (1193.2898 without restraints) Performing minimization step: 3677. Total energy = 1195.2325 kcal/mol (1193.2390 without restraints) Performing minimization step: 3678. Total energy = 1195.1813 kcal/mol (1193.1881 without restraints) Performing minimization step: 3679. Total energy = 1195.1302 kcal/mol (1193.1373 without restraints) Performing minimization step: 3680. Total energy = 1195.0791 kcal/mol (1193.0866 without restraints) Performing minimization step: 3681. Total energy = 1195.0280 kcal/mol (1193.0358 without restraints) Performing minimization step: 3682. Total energy = 1194.9767 kcal/mol (1192.9848 without restraints) Performing minimization step: 3683. Total energy = 1194.9261 kcal/mol (1192.9346 without restraints) Performing minimization step: 3684. Total energy = 1194.8751 kcal/mol (1192.8837 without restraints) Performing minimization step: 3685. Total energy = 1194.8240 kcal/mol (1192.8332 without restraints) Performing minimization step: 3686. Total energy = 1194.7730 kcal/mol (1192.7822 without restraints) Performing minimization step: 3687. Total energy = 1194.7218 kcal/mol (1192.7313 without restraints) Performing minimization step: 3688. Total energy = 1194.6707 kcal/mol (1192.6806 without restraints) Performing minimization step: 3689. Total energy = 1194.6196 kcal/mol (1192.6298 without restraints) Performing minimization step: 3690. Total energy = 1194.5683 kcal/mol (1192.5788 without restraints) Performing minimization step: 3691. Total energy = 1194.5173 kcal/mol (1192.5281 without restraints) Performing minimization step: 3692. Total energy = 1194.4662 kcal/mol (1192.4774 without restraints) Performing minimization step: 3693. Total energy = 1194.4155 kcal/mol (1192.4270 without restraints) Performing minimization step: 3694. Total energy = 1194.3646 kcal/mol (1192.3763 without restraints) Performing minimization step: 3695. Total energy = 1194.3135 kcal/mol (1192.3255 without restraints) Performing minimization step: 3696. Total energy = 1194.2627 kcal/mol (1192.2751 without restraints) Performing minimization step: 3697. Total energy = 1194.2116 kcal/mol (1192.2243 without restraints) Performing minimization step: 3698. Total energy = 1194.1607 kcal/mol (1192.1737 without restraints) Performing minimization step: 3699. Total energy = 1194.1098 kcal/mol (1192.1233 without restraints) Performing minimization step: 3700. Total energy = 1194.0587 kcal/mol (1192.0723 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 1194.0077 kcal/mol (1192.0216 without restraints) Performing minimization step: 3702. Total energy = 1193.9567 kcal/mol (1191.9707 without restraints) Performing minimization step: 3703. Total energy = 1193.9057 kcal/mol (1191.9202 without restraints) Performing minimization step: 3704. Total energy = 1193.8549 kcal/mol (1191.8697 without restraints) Performing minimization step: 3705. Total energy = 1193.8041 kcal/mol (1191.8192 without restraints) Performing minimization step: 3706. Total energy = 1193.7533 kcal/mol (1191.7687 without restraints) Performing minimization step: 3707. Total energy = 1193.7025 kcal/mol (1191.7181 without restraints) Performing minimization step: 3708. Total energy = 1193.6516 kcal/mol (1191.6676 without restraints) Performing minimization step: 3709. Total energy = 1193.6008 kcal/mol (1191.6172 without restraints) Performing minimization step: 3710. Total energy = 1193.5502 kcal/mol (1191.5669 without restraints) Performing minimization step: 3711. Total energy = 1193.4994 kcal/mol (1191.5163 without restraints) Performing minimization step: 3712. Total energy = 1193.4491 kcal/mol (1191.4663 without restraints) Performing minimization step: 3713. Total energy = 1193.3984 kcal/mol (1191.4159 without restraints) Performing minimization step: 3714. Total energy = 1193.3479 kcal/mol (1191.3658 without restraints) Performing minimization step: 3715. Total energy = 1193.2971 kcal/mol (1191.3154 without restraints) Performing minimization step: 3716. Total energy = 1193.2466 kcal/mol (1191.2650 without restraints) Performing minimization step: 3717. Total energy = 1193.1960 kcal/mol (1191.2147 without restraints) Performing minimization step: 3718. Total energy = 1193.1456 kcal/mol (1191.1646 without restraints) Performing minimization step: 3719. Total energy = 1193.0950 kcal/mol (1191.1143 without restraints) Performing minimization step: 3720. Total energy = 1193.0444 kcal/mol (1191.0640 without restraints) Performing minimization step: 3721. Total energy = 1192.9938 kcal/mol (1191.0137 without restraints) Performing minimization step: 3722. Total energy = 1192.9436 kcal/mol (1190.9638 without restraints) Performing minimization step: 3723. Total energy = 1192.8930 kcal/mol (1190.9135 without restraints) Performing minimization step: 3724. Total energy = 1192.8425 kcal/mol (1190.8633 without restraints) Performing minimization step: 3725. Total energy = 1192.7920 kcal/mol (1190.8131 without restraints) Performing minimization step: 3726. Total energy = 1192.7412 kcal/mol (1190.7626 without restraints) Performing minimization step: 3727. Total energy = 1192.6907 kcal/mol (1190.7124 without restraints) Performing minimization step: 3728. Total energy = 1192.6403 kcal/mol (1190.6623 without restraints) Performing minimization step: 3729. Total energy = 1192.5898 kcal/mol (1190.6121 without restraints) Performing minimization step: 3730. Total energy = 1192.5393 kcal/mol (1190.5619 without restraints) Performing minimization step: 3731. Total energy = 1192.4889 kcal/mol (1190.5118 without restraints) Performing minimization step: 3732. Total energy = 1192.4387 kcal/mol (1190.4619 without restraints) Performing minimization step: 3733. Total energy = 1192.3883 kcal/mol (1190.4118 without restraints) Performing minimization step: 3734. Total energy = 1192.3379 kcal/mol (1190.3617 without restraints) Performing minimization step: 3735. Total energy = 1192.2874 kcal/mol (1190.3114 without restraints) Performing minimization step: 3736. Total energy = 1192.2367 kcal/mol (1190.2610 without restraints) Performing minimization step: 3737. Total energy = 1192.1862 kcal/mol (1190.2109 without restraints) Performing minimization step: 3738. Total energy = 1192.1357 kcal/mol (1190.1607 without restraints) Performing minimization step: 3739. Total energy = 1192.0854 kcal/mol (1190.1106 without restraints) Performing minimization step: 3740. Total energy = 1192.0350 kcal/mol (1190.0606 without restraints) Performing minimization step: 3741. Total energy = 1191.9847 kcal/mol (1190.0105 without restraints) Performing minimization step: 3742. Total energy = 1191.9341 kcal/mol (1189.9602 without restraints) Performing minimization step: 3743. Total energy = 1191.8841 kcal/mol (1189.9106 without restraints) Performing minimization step: 3744. Total energy = 1191.8340 kcal/mol (1189.8608 without restraints) Performing minimization step: 3745. Total energy = 1191.7838 kcal/mol (1189.8108 without restraints) Performing minimization step: 3746. Total energy = 1191.7335 kcal/mol (1189.7608 without restraints) Performing minimization step: 3747. Total energy = 1191.6833 kcal/mol (1189.7109 without restraints) Performing minimization step: 3748. Total energy = 1191.6332 kcal/mol (1189.6612 without restraints) Performing minimization step: 3749. Total energy = 1191.5828 kcal/mol (1189.6108 without restraints) Performing minimization step: 3750. Total energy = 1191.5318 kcal/mol (1189.5603 without restraints) Performing minimization step: 3751. Total energy = 1191.4817 kcal/mol (1189.5104 without restraints) Performing minimization step: 3752. Total energy = 1191.4312 kcal/mol (1189.4603 without restraints) Performing minimization step: 3753. Total energy = 1191.3813 kcal/mol (1189.4106 without restraints) Performing minimization step: 3754. Total energy = 1191.3309 kcal/mol (1189.3605 without restraints) Performing minimization step: 3755. Total energy = 1191.2808 kcal/mol (1189.3107 without restraints) Performing minimization step: 3756. Total energy = 1191.2305 kcal/mol (1189.2606 without restraints) Performing minimization step: 3757. Total energy = 1191.1805 kcal/mol (1189.2110 without restraints) Performing minimization step: 3758. Total energy = 1191.1304 kcal/mol (1189.1612 without restraints) Performing minimization step: 3759. Total energy = 1191.0802 kcal/mol (1189.1111 without restraints) Performing minimization step: 3760. Total energy = 1191.0300 kcal/mol (1189.0614 without restraints) Performing minimization step: 3761. Total energy = 1190.9803 kcal/mol (1189.0119 without restraints) Performing minimization step: 3762. Total energy = 1190.9304 kcal/mol (1188.9623 without restraints) Performing minimization step: 3763. Total energy = 1190.8804 kcal/mol (1188.9126 without restraints) Performing minimization step: 3764. Total energy = 1190.8302 kcal/mol (1188.8626 without restraints) Performing minimization step: 3765. Total energy = 1190.7803 kcal/mol (1188.8131 without restraints) Performing minimization step: 3766. Total energy = 1190.7303 kcal/mol (1188.7634 without restraints) Performing minimization step: 3767. Total energy = 1190.6804 kcal/mol (1188.7137 without restraints) Performing minimization step: 3768. Total energy = 1190.6304 kcal/mol (1188.6640 without restraints) Performing minimization step: 3769. Total energy = 1190.5805 kcal/mol (1188.6145 without restraints) Performing minimization step: 3770. Total energy = 1190.5305 kcal/mol (1188.5646 without restraints) Performing minimization step: 3771. Total energy = 1190.4804 kcal/mol (1188.5149 without restraints) Performing minimization step: 3772. Total energy = 1190.4305 kcal/mol (1188.4652 without restraints) Performing minimization step: 3773. Total energy = 1190.3806 kcal/mol (1188.4156 without restraints) Performing minimization step: 3774. Total energy = 1190.3305 kcal/mol (1188.3658 without restraints) Performing minimization step: 3775. Total energy = 1190.2808 kcal/mol (1188.3164 without restraints) Performing minimization step: 3776. Total energy = 1190.2309 kcal/mol (1188.2668 without restraints) Performing minimization step: 3777. Total energy = 1190.1810 kcal/mol (1188.2172 without restraints) Performing minimization step: 3778. Total energy = 1190.1311 kcal/mol (1188.1676 without restraints) Performing minimization step: 3779. Total energy = 1190.0814 kcal/mol (1188.1182 without restraints) Performing minimization step: 3780. Total energy = 1190.0316 kcal/mol (1188.0686 without restraints) Performing minimization step: 3781. Total energy = 1189.9820 kcal/mol (1188.0194 without restraints) Performing minimization step: 3782. Total energy = 1189.9322 kcal/mol (1187.9698 without restraints) Performing minimization step: 3783. Total energy = 1189.8823 kcal/mol (1187.9202 without restraints) Performing minimization step: 3784. Total energy = 1189.8322 kcal/mol (1187.8704 without restraints) Performing minimization step: 3785. Total energy = 1189.7824 kcal/mol (1187.8208 without restraints) Performing minimization step: 3786. Total energy = 1189.7326 kcal/mol (1187.7713 without restraints) Performing minimization step: 3787. Total energy = 1189.6827 kcal/mol (1187.7217 without restraints) Performing minimization step: 3788. Total energy = 1189.6333 kcal/mol (1187.6726 without restraints) Performing minimization step: 3789. Total energy = 1189.5833 kcal/mol (1187.6229 without restraints) Performing minimization step: 3790. Total energy = 1189.5336 kcal/mol (1187.5734 without restraints) Performing minimization step: 3791. Total energy = 1189.4838 kcal/mol (1187.5239 without restraints) Performing minimization step: 3792. Total energy = 1189.4341 kcal/mol (1187.4744 without restraints) Performing minimization step: 3793. Total energy = 1189.3844 kcal/mol (1187.4250 without restraints) Performing minimization step: 3794. Total energy = 1189.3346 kcal/mol (1187.3755 without restraints) Performing minimization step: 3795. Total energy = 1189.2846 kcal/mol (1187.3257 without restraints) Performing minimization step: 3796. Total energy = 1189.2351 kcal/mol (1187.2765 without restraints) Performing minimization step: 3797. Total energy = 1189.1854 kcal/mol (1187.2271 without restraints) Performing minimization step: 3798. Total energy = 1189.1355 kcal/mol (1187.1775 without restraints) Performing minimization step: 3799. Total energy = 1189.0858 kcal/mol (1187.1281 without restraints) Performing minimization step: 3800. Total energy = 1189.0363 kcal/mol (1187.0788 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 1188.9867 kcal/mol (1187.0294 without restraints) Performing minimization step: 3802. Total energy = 1188.9367 kcal/mol (1186.9798 without restraints) Performing minimization step: 3803. Total energy = 1188.8869 kcal/mol (1186.9302 without restraints) Performing minimization step: 3804. Total energy = 1188.8371 kcal/mol (1186.8806 without restraints) Performing minimization step: 3805. Total energy = 1188.7874 kcal/mol (1186.8313 without restraints) Performing minimization step: 3806. Total energy = 1188.7378 kcal/mol (1186.7822 without restraints) Performing minimization step: 3807. Total energy = 1188.6883 kcal/mol (1186.7327 without restraints) Performing minimization step: 3808. Total energy = 1188.6390 kcal/mol (1186.6837 without restraints) Performing minimization step: 3809. Total energy = 1188.5893 kcal/mol (1186.6342 without restraints) Performing minimization step: 3810. Total energy = 1188.5398 kcal/mol (1186.5851 without restraints) Performing minimization step: 3811. Total energy = 1188.4903 kcal/mol (1186.5358 without restraints) Performing minimization step: 3812. Total energy = 1188.4408 kcal/mol (1186.4867 without restraints) Performing minimization step: 3813. Total energy = 1188.3913 kcal/mol (1186.4374 without restraints) Performing minimization step: 3814. Total energy = 1188.3418 kcal/mol (1186.3882 without restraints) Performing minimization step: 3815. Total energy = 1188.2923 kcal/mol (1186.3390 without restraints) Performing minimization step: 3816. Total energy = 1188.2428 kcal/mol (1186.2897 without restraints) Performing minimization step: 3817. Total energy = 1188.1933 kcal/mol (1186.2404 without restraints) Performing minimization step: 3818. Total energy = 1188.1439 kcal/mol (1186.1914 without restraints) Performing minimization step: 3819. Total energy = 1188.0944 kcal/mol (1186.1421 without restraints) Performing minimization step: 3820. Total energy = 1188.0447 kcal/mol (1186.0927 without restraints) Performing minimization step: 3821. Total energy = 1187.9952 kcal/mol (1186.0435 without restraints) Performing minimization step: 3822. Total energy = 1187.9459 kcal/mol (1185.9944 without restraints) Performing minimization step: 3823. Total energy = 1187.8965 kcal/mol (1185.9452 without restraints) Performing minimization step: 3824. Total energy = 1187.8470 kcal/mol (1185.8960 without restraints) Performing minimization step: 3825. Total energy = 1187.7976 kcal/mol (1185.8469 without restraints) Performing minimization step: 3826. Total energy = 1187.7481 kcal/mol (1185.7977 without restraints) Performing minimization step: 3827. Total energy = 1187.6987 kcal/mol (1185.7485 without restraints) Performing minimization step: 3828. Total energy = 1187.6490 kcal/mol (1185.6991 without restraints) Performing minimization step: 3829. Total energy = 1187.5996 kcal/mol (1185.6499 without restraints) Performing minimization step: 3830. Total energy = 1187.5502 kcal/mol (1185.6009 without restraints) Performing minimization step: 3831. Total energy = 1187.5009 kcal/mol (1185.5518 without restraints) Performing minimization step: 3832. Total energy = 1187.4514 kcal/mol (1185.5026 without restraints) Performing minimization step: 3833. Total energy = 1187.4018 kcal/mol (1185.4533 without restraints) Performing minimization step: 3834. Total energy = 1187.3521 kcal/mol (1185.4036 without restraints) Performing minimization step: 3835. Total energy = 1187.3024 kcal/mol (1185.3543 without restraints) Performing minimization step: 3836. Total energy = 1187.2531 kcal/mol (1185.3052 without restraints) Performing minimization step: 3837. Total energy = 1187.2037 kcal/mol (1185.2561 without restraints) Performing minimization step: 3838. Total energy = 1187.1540 kcal/mol (1185.2068 without restraints) Performing minimization step: 3839. Total energy = 1187.1047 kcal/mol (1185.1577 without restraints) Performing minimization step: 3840. Total energy = 1187.0553 kcal/mol (1185.1086 without restraints) Performing minimization step: 3841. Total energy = 1187.0060 kcal/mol (1185.0595 without restraints) Performing minimization step: 3842. Total energy = 1186.9566 kcal/mol (1185.0104 without restraints) Performing minimization step: 3843. Total energy = 1186.9077 kcal/mol (1184.9617 without restraints) Performing minimization step: 3844. Total energy = 1186.8584 kcal/mol (1184.9127 without restraints) Performing minimization step: 3845. Total energy = 1186.8090 kcal/mol (1184.8636 without restraints) Performing minimization step: 3846. Total energy = 1186.7597 kcal/mol (1184.8145 without restraints) Performing minimization step: 3847. Total energy = 1186.7104 kcal/mol (1184.7655 without restraints) Performing minimization step: 3848. Total energy = 1186.6611 kcal/mol (1184.7164 without restraints) Performing minimization step: 3849. Total energy = 1186.6118 kcal/mol (1184.6674 without restraints) Performing minimization step: 3850. Total energy = 1186.5625 kcal/mol (1184.6183 without restraints) Performing minimization step: 3851. Total energy = 1186.5132 kcal/mol (1184.5693 without restraints) Performing minimization step: 3852. Total energy = 1186.4639 kcal/mol (1184.5203 without restraints) Performing minimization step: 3853. Total energy = 1186.4146 kcal/mol (1184.4712 without restraints) Performing minimization step: 3854. Total energy = 1186.3654 kcal/mol (1184.4222 without restraints) Performing minimization step: 3855. Total energy = 1186.3158 kcal/mol (1184.3730 without restraints) Performing minimization step: 3856. Total energy = 1186.2668 kcal/mol (1184.3242 without restraints) Performing minimization step: 3857. Total energy = 1186.2174 kcal/mol (1184.2749 without restraints) Performing minimization step: 3858. Total energy = 1186.1682 kcal/mol (1184.2261 without restraints) Performing minimization step: 3859. Total energy = 1186.1190 kcal/mol (1184.1771 without restraints) Performing minimization step: 3860. Total energy = 1186.0697 kcal/mol (1184.1281 without restraints) Performing minimization step: 3861. Total energy = 1186.0205 kcal/mol (1184.0791 without restraints) Performing minimization step: 3862. Total energy = 1185.9713 kcal/mol (1184.0302 without restraints) Performing minimization step: 3863. Total energy = 1185.9221 kcal/mol (1183.9812 without restraints) Performing minimization step: 3864. Total energy = 1185.8727 kcal/mol (1183.9321 without restraints) Performing minimization step: 3865. Total energy = 1185.8234 kcal/mol (1183.8831 without restraints) Performing minimization step: 3866. Total energy = 1185.7742 kcal/mol (1183.8342 without restraints) Performing minimization step: 3867. Total energy = 1185.7250 kcal/mol (1183.7852 without restraints) Performing minimization step: 3868. Total energy = 1185.6758 kcal/mol (1183.7362 without restraints) Performing minimization step: 3869. Total energy = 1185.6261 kcal/mol (1183.6868 without restraints) Performing minimization step: 3870. Total energy = 1185.5769 kcal/mol (1183.6378 without restraints) Performing minimization step: 3871. Total energy = 1185.5277 kcal/mol (1183.5889 without restraints) Performing minimization step: 3872. Total energy = 1185.4787 kcal/mol (1183.5402 without restraints) Performing minimization step: 3873. Total energy = 1185.4295 kcal/mol (1183.4912 without restraints) Performing minimization step: 3874. Total energy = 1185.3802 kcal/mol (1183.4422 without restraints) Performing minimization step: 3875. Total energy = 1185.3311 kcal/mol (1183.3932 without restraints) Performing minimization step: 3876. Total energy = 1185.2818 kcal/mol (1183.3444 without restraints) Performing minimization step: 3877. Total energy = 1185.2325 kcal/mol (1183.2952 without restraints) Performing minimization step: 3878. Total energy = 1185.1838 kcal/mol (1183.2467 without restraints) Performing minimization step: 3879. Total energy = 1185.1344 kcal/mol (1183.1976 without restraints) Performing minimization step: 3880. Total energy = 1185.0854 kcal/mol (1183.1489 without restraints) Performing minimization step: 3881. Total energy = 1185.0363 kcal/mol (1183.1000 without restraints) Performing minimization step: 3882. Total energy = 1184.9872 kcal/mol (1183.0511 without restraints) Performing minimization step: 3883. Total energy = 1184.9379 kcal/mol (1183.0020 without restraints) Performing minimization step: 3884. Total energy = 1184.8887 kcal/mol (1182.9531 without restraints) Performing minimization step: 3885. Total energy = 1184.8396 kcal/mol (1182.9042 without restraints) Performing minimization step: 3886. Total energy = 1184.7906 kcal/mol (1182.8556 without restraints) Performing minimization step: 3887. Total energy = 1184.7416 kcal/mol (1182.8068 without restraints) Performing minimization step: 3888. Total energy = 1184.6925 kcal/mol (1182.7579 without restraints) Performing minimization step: 3889. Total energy = 1184.6434 kcal/mol (1182.7090 without restraints) Performing minimization step: 3890. Total energy = 1184.5944 kcal/mol (1182.6603 without restraints) Performing minimization step: 3891. Total energy = 1184.5453 kcal/mol (1182.6114 without restraints) Performing minimization step: 3892. Total energy = 1184.4963 kcal/mol (1182.5627 without restraints) Performing minimization step: 3893. Total energy = 1184.4469 kcal/mol (1182.5136 without restraints) Performing minimization step: 3894. Total energy = 1184.3976 kcal/mol (1182.4645 without restraints) Performing minimization step: 3895. Total energy = 1184.3485 kcal/mol (1182.4156 without restraints) Performing minimization step: 3896. Total energy = 1184.2994 kcal/mol (1182.3667 without restraints) Performing minimization step: 3897. Total energy = 1184.2502 kcal/mol (1182.3178 without restraints) Performing minimization step: 3898. Total energy = 1184.2011 kcal/mol (1182.2689 without restraints) Performing minimization step: 3899. Total energy = 1184.1520 kcal/mol (1182.2201 without restraints) Performing minimization step: 3900. Total energy = 1184.1029 kcal/mol (1182.1712 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 1184.0538 kcal/mol (1182.1223 without restraints) Performing minimization step: 3902. Total energy = 1184.0049 kcal/mol (1182.0737 without restraints) Performing minimization step: 3903. Total energy = 1183.9557 kcal/mol (1182.0248 without restraints) Performing minimization step: 3904. Total energy = 1183.9064 kcal/mol (1181.9757 without restraints) Performing minimization step: 3905. Total energy = 1183.8577 kcal/mol (1181.9272 without restraints) Performing minimization step: 3906. Total energy = 1183.8084 kcal/mol (1181.8782 without restraints) Performing minimization step: 3907. Total energy = 1183.7593 kcal/mol (1181.8293 without restraints) Performing minimization step: 3908. Total energy = 1183.7102 kcal/mol (1181.7804 without restraints) Performing minimization step: 3909. Total energy = 1183.6611 kcal/mol (1181.7315 without restraints) Performing minimization step: 3910. Total energy = 1183.6120 kcal/mol (1181.6827 without restraints) Performing minimization step: 3911. Total energy = 1183.5630 kcal/mol (1181.6340 without restraints) Performing minimization step: 3912. Total energy = 1183.5141 kcal/mol (1181.5854 without restraints) Performing minimization step: 3913. Total energy = 1183.4657 kcal/mol (1181.5371 without restraints) Performing minimization step: 3914. Total energy = 1183.4167 kcal/mol (1181.4884 without restraints) Performing minimization step: 3915. Total energy = 1183.3676 kcal/mol (1181.4395 without restraints) Performing minimization step: 3916. Total energy = 1183.3185 kcal/mol (1181.3907 without restraints) Performing minimization step: 3917. Total energy = 1183.2694 kcal/mol (1181.3418 without restraints) Performing minimization step: 3918. Total energy = 1183.2203 kcal/mol (1181.2929 without restraints) Performing minimization step: 3919. Total energy = 1183.1711 kcal/mol (1181.2438 without restraints) Performing minimization step: 3920. Total energy = 1183.1219 kcal/mol (1181.1950 without restraints) Performing minimization step: 3921. Total energy = 1183.0729 kcal/mol (1181.1463 without restraints) Performing minimization step: 3922. Total energy = 1183.0234 kcal/mol (1181.0969 without restraints) Performing minimization step: 3923. Total energy = 1182.9743 kcal/mol (1181.0481 without restraints) Performing minimization step: 3924. Total energy = 1182.9252 kcal/mol (1180.9992 without restraints) Performing minimization step: 3925. Total energy = 1182.8761 kcal/mol (1180.9504 without restraints) Performing minimization step: 3926. Total energy = 1182.8272 kcal/mol (1180.9017 without restraints) Performing minimization step: 3927. Total energy = 1182.7784 kcal/mol (1180.8531 without restraints) Performing minimization step: 3928. Total energy = 1182.7292 kcal/mol (1180.8042 without restraints) Performing minimization step: 3929. Total energy = 1182.6801 kcal/mol (1180.7554 without restraints) Performing minimization step: 3930. Total energy = 1182.6310 kcal/mol (1180.7064 without restraints) Performing minimization step: 3931. Total energy = 1182.5819 kcal/mol (1180.6576 without restraints) Performing minimization step: 3932. Total energy = 1182.5330 kcal/mol (1180.6089 without restraints) Performing minimization step: 3933. Total energy = 1182.4839 kcal/mol (1180.5600 without restraints) Performing minimization step: 3934. Total energy = 1182.4350 kcal/mol (1180.5113 without restraints) Performing minimization step: 3935. Total energy = 1182.3859 kcal/mol (1180.4625 without restraints) Performing minimization step: 3936. Total energy = 1182.3368 kcal/mol (1180.4136 without restraints) Performing minimization step: 3937. Total energy = 1182.2877 kcal/mol (1180.3647 without restraints) Performing minimization step: 3938. Total energy = 1182.2386 kcal/mol (1180.3159 without restraints) Performing minimization step: 3939. Total energy = 1182.1893 kcal/mol (1180.2668 without restraints) Performing minimization step: 3940. Total energy = 1182.1403 kcal/mol (1180.2180 without restraints) Performing minimization step: 3941. Total energy = 1182.0912 kcal/mol (1180.1691 without restraints) Performing minimization step: 3942. Total energy = 1182.0423 kcal/mol (1180.1205 without restraints) Performing minimization step: 3943. Total energy = 1181.9931 kcal/mol (1180.0716 without restraints) Performing minimization step: 3944. Total energy = 1181.9440 kcal/mol (1180.0227 without restraints) Performing minimization step: 3945. Total energy = 1181.8949 kcal/mol (1179.9738 without restraints) Performing minimization step: 3946. Total energy = 1181.8458 kcal/mol (1179.9249 without restraints) Performing minimization step: 3947. Total energy = 1181.7967 kcal/mol (1179.8761 without restraints) Performing minimization step: 3948. Total energy = 1181.7476 kcal/mol (1179.8272 without restraints) Performing minimization step: 3949. Total energy = 1181.6985 kcal/mol (1179.7783 without restraints) Performing minimization step: 3950. Total energy = 1181.6494 kcal/mol (1179.7294 without restraints) Performing minimization step: 3951. Total energy = 1181.6003 kcal/mol (1179.6805 without restraints) Performing minimization step: 3952. Total energy = 1181.5512 kcal/mol (1179.6316 without restraints) Performing minimization step: 3953. Total energy = 1181.5016 kcal/mol (1179.5823 without restraints) Performing minimization step: 3954. Total energy = 1181.4525 kcal/mol (1179.5334 without restraints) Performing minimization step: 3955. Total energy = 1181.4036 kcal/mol (1179.4849 without restraints) Performing minimization step: 3956. Total energy = 1181.3547 kcal/mol (1179.4361 without restraints) Performing minimization step: 3957. Total energy = 1181.3056 kcal/mol (1179.3872 without restraints) Performing minimization step: 3958. Total energy = 1181.2565 kcal/mol (1179.3382 without restraints) Performing minimization step: 3959. Total energy = 1181.2070 kcal/mol (1179.2891 without restraints) Performing minimization step: 3960. Total energy = 1181.1579 kcal/mol (1179.2401 without restraints) Performing minimization step: 3961. Total energy = 1181.1087 kcal/mol (1179.1912 without restraints) Performing minimization step: 3962. Total energy = 1181.0596 kcal/mol (1179.1423 without restraints) Performing minimization step: 3963. Total energy = 1181.0104 kcal/mol (1179.0933 without restraints) Performing minimization step: 3964. Total energy = 1180.9614 kcal/mol (1179.0444 without restraints) Performing minimization step: 3965. Total energy = 1180.9123 kcal/mol (1178.9959 without restraints) Performing minimization step: 3966. Total energy = 1180.8634 kcal/mol (1178.9470 without restraints) Performing minimization step: 3967. Total energy = 1180.8142 kcal/mol (1178.8980 without restraints) Performing minimization step: 3968. Total energy = 1180.7648 kcal/mol (1178.8488 without restraints) Performing minimization step: 3969. Total energy = 1180.7157 kcal/mol (1178.7999 without restraints) Performing minimization step: 3970. Total energy = 1180.6668 kcal/mol (1178.7513 without restraints) Performing minimization step: 3971. Total energy = 1180.6179 kcal/mol (1178.7025 without restraints) Performing minimization step: 3972. Total energy = 1180.5685 kcal/mol (1178.6534 without restraints) Performing minimization step: 3973. Total energy = 1180.5194 kcal/mol (1178.6045 without restraints) Performing minimization step: 3974. Total energy = 1180.4700 kcal/mol (1178.5553 without restraints) Performing minimization step: 3975. Total energy = 1180.4204 kcal/mol (1178.5059 without restraints) Performing minimization step: 3976. Total energy = 1180.3713 kcal/mol (1178.4572 without restraints) Performing minimization step: 3977. Total energy = 1180.3222 kcal/mol (1178.4082 without restraints) Performing minimization step: 3978. Total energy = 1180.2730 kcal/mol (1178.3592 without restraints) Performing minimization step: 3979. Total energy = 1180.2238 kcal/mol (1178.3102 without restraints) Performing minimization step: 3980. Total energy = 1180.1746 kcal/mol (1178.2612 without restraints) Performing minimization step: 3981. Total energy = 1180.1256 kcal/mol (1178.2124 without restraints) Performing minimization step: 3982. Total energy = 1180.0763 kcal/mol (1178.1634 without restraints) Performing minimization step: 3983. Total energy = 1180.0271 kcal/mol (1178.1144 without restraints) Performing minimization step: 3984. Total energy = 1179.9780 kcal/mol (1178.0656 without restraints) Performing minimization step: 3985. Total energy = 1179.9286 kcal/mol (1178.0163 without restraints) Performing minimization step: 3986. Total energy = 1179.8794 kcal/mol (1177.9673 without restraints) Performing minimization step: 3987. Total energy = 1179.8301 kcal/mol (1177.9183 without restraints) Performing minimization step: 3988. Total energy = 1179.7809 kcal/mol (1177.8693 without restraints) Performing minimization step: 3989. Total energy = 1179.7317 kcal/mol (1177.8203 without restraints) Performing minimization step: 3990. Total energy = 1179.6825 kcal/mol (1177.7713 without restraints) Performing minimization step: 3991. Total energy = 1179.6335 kcal/mol (1177.7225 without restraints) Performing minimization step: 3992. Total energy = 1179.5842 kcal/mol (1177.6734 without restraints) Performing minimization step: 3993. Total energy = 1179.5352 kcal/mol (1177.6246 without restraints) Performing minimization step: 3994. Total energy = 1179.4861 kcal/mol (1177.5758 without restraints) Performing minimization step: 3995. Total energy = 1179.4369 kcal/mol (1177.5268 without restraints) Performing minimization step: 3996. Total energy = 1179.3876 kcal/mol (1177.4777 without restraints) Performing minimization step: 3997. Total energy = 1179.3384 kcal/mol (1177.4286 without restraints) Performing minimization step: 3998. Total energy = 1179.2889 kcal/mol (1177.3794 without restraints) Performing minimization step: 3999. Total energy = 1179.2396 kcal/mol (1177.3303 without restraints) Performing minimization step: 4000. Total energy = 1179.1903 kcal/mol (1177.2812 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 1179.1410 kcal/mol (1177.2321 without restraints) Performing minimization step: 4002. Total energy = 1179.0917 kcal/mol (1177.1830 without restraints) Performing minimization step: 4003. Total energy = 1179.0422 kcal/mol (1177.1338 without restraints) Performing minimization step: 4004. Total energy = 1178.9929 kcal/mol (1177.0847 without restraints) Performing minimization step: 4005. Total energy = 1178.9436 kcal/mol (1177.0355 without restraints) Performing minimization step: 4006. Total energy = 1178.8944 kcal/mol (1176.9866 without restraints) Performing minimization step: 4007. Total energy = 1178.8453 kcal/mol (1176.9376 without restraints) Performing minimization step: 4008. Total energy = 1178.7959 kcal/mol (1176.8885 without restraints) Performing minimization step: 4009. Total energy = 1178.7466 kcal/mol (1176.8393 without restraints) Performing minimization step: 4010. Total energy = 1178.6973 kcal/mol (1176.7902 without restraints) Performing minimization step: 4011. Total energy = 1178.6479 kcal/mol (1176.7411 without restraints) Performing minimization step: 4012. Total energy = 1178.5986 kcal/mol (1176.6920 without restraints) Performing minimization step: 4013. Total energy = 1178.5491 kcal/mol (1176.6427 without restraints) Performing minimization step: 4014. Total energy = 1178.4997 kcal/mol (1176.5935 without restraints) Performing minimization step: 4015. Total energy = 1178.4507 kcal/mol (1176.5447 without restraints) Performing minimization step: 4016. Total energy = 1178.4013 kcal/mol (1176.4955 without restraints) Performing minimization step: 4017. Total energy = 1178.3519 kcal/mol (1176.4463 without restraints) Performing minimization step: 4018. Total energy = 1178.3025 kcal/mol (1176.3972 without restraints) Performing minimization step: 4019. Total energy = 1178.2531 kcal/mol (1176.3480 without restraints) Performing minimization step: 4020. Total energy = 1178.2037 kcal/mol (1176.2988 without restraints) Performing minimization step: 4021. Total energy = 1178.1544 kcal/mol (1176.2495 without restraints) Performing minimization step: 4022. Total energy = 1178.1048 kcal/mol (1176.2003 without restraints) Performing minimization step: 4023. Total energy = 1178.0554 kcal/mol (1176.1511 without restraints) Performing minimization step: 4024. Total energy = 1178.0060 kcal/mol (1176.1019 without restraints) Performing minimization step: 4025. Total energy = 1177.9566 kcal/mol (1176.0527 without restraints) Performing minimization step: 4026. Total energy = 1177.9065 kcal/mol (1176.0028 without restraints) Performing minimization step: 4027. Total energy = 1177.8572 kcal/mol (1175.9536 without restraints) Performing minimization step: 4028. Total energy = 1177.8077 kcal/mol (1175.9044 without restraints) Performing minimization step: 4029. Total energy = 1177.7583 kcal/mol (1175.8552 without restraints) Performing minimization step: 4030. Total energy = 1177.7089 kcal/mol (1175.8059 without restraints) Performing minimization step: 4031. Total energy = 1177.6595 kcal/mol (1175.7569 without restraints) Performing minimization step: 4032. Total energy = 1177.6105 kcal/mol (1175.7080 without restraints) Performing minimization step: 4033. Total energy = 1177.5610 kcal/mol (1175.6585 without restraints) Performing minimization step: 4034. Total energy = 1177.5114 kcal/mol (1175.6092 without restraints) Performing minimization step: 4035. Total energy = 1177.4617 kcal/mol (1175.5598 without restraints) Performing minimization step: 4036. Total energy = 1177.4122 kcal/mol (1175.5104 without restraints) Performing minimization step: 4037. Total energy = 1177.3631 kcal/mol (1175.4616 without restraints) Performing minimization step: 4038. Total energy = 1177.3136 kcal/mol (1175.4123 without restraints) Performing minimization step: 4039. Total energy = 1177.2639 kcal/mol (1175.3628 without restraints) Performing minimization step: 4040. Total energy = 1177.2145 kcal/mol (1175.3137 without restraints) Performing minimization step: 4041. Total energy = 1177.1651 kcal/mol (1175.2644 without restraints) Performing minimization step: 4042. Total energy = 1177.1157 kcal/mol (1175.2150 without restraints) Performing minimization step: 4043. Total energy = 1177.0658 kcal/mol (1175.1655 without restraints) Performing minimization step: 4044. Total energy = 1177.0163 kcal/mol (1175.1162 without restraints) Performing minimization step: 4045. Total energy = 1176.9665 kcal/mol (1175.0666 without restraints) Performing minimization step: 4046. Total energy = 1176.9170 kcal/mol (1175.0172 without restraints) Performing minimization step: 4047. Total energy = 1176.8674 kcal/mol (1174.9678 without restraints) Performing minimization step: 4048. Total energy = 1176.8178 kcal/mol (1174.9184 without restraints) Performing minimization step: 4049. Total energy = 1176.7682 kcal/mol (1174.8690 without restraints) Performing minimization step: 4050. Total energy = 1176.7187 kcal/mol (1174.8197 without restraints) Performing minimization step: 4051. Total energy = 1176.6686 kcal/mol (1174.7698 without restraints) Performing minimization step: 4052. Total energy = 1176.6190 kcal/mol (1174.7204 without restraints) Performing minimization step: 4053. Total energy = 1176.5695 kcal/mol (1174.6713 without restraints) Performing minimization step: 4054. Total energy = 1176.5200 kcal/mol (1174.6219 without restraints) Performing minimization step: 4055. Total energy = 1176.4704 kcal/mol (1174.5724 without restraints) Performing minimization step: 4056. Total energy = 1176.4208 kcal/mol (1174.5230 without restraints) Performing minimization step: 4057. Total energy = 1176.3712 kcal/mol (1174.4736 without restraints) Performing minimization step: 4058. Total energy = 1176.3215 kcal/mol (1174.4241 without restraints) Performing minimization step: 4059. Total energy = 1176.2720 kcal/mol (1174.3749 without restraints) Performing minimization step: 4060. Total energy = 1176.2225 kcal/mol (1174.3254 without restraints) Performing minimization step: 4061. Total energy = 1176.1728 kcal/mol (1174.2759 without restraints) Performing minimization step: 4062. Total energy = 1176.1231 kcal/mol (1174.2265 without restraints) Performing minimization step: 4063. Total energy = 1176.0735 kcal/mol (1174.1770 without restraints) Performing minimization step: 4064. Total energy = 1176.0235 kcal/mol (1174.1272 without restraints) Performing minimization step: 4065. Total energy = 1175.9738 kcal/mol (1174.0777 without restraints) Performing minimization step: 4066. Total energy = 1175.9241 kcal/mol (1174.0282 without restraints) Performing minimization step: 4067. Total energy = 1175.8744 kcal/mol (1173.9788 without restraints) Performing minimization step: 4068. Total energy = 1175.8248 kcal/mol (1173.9293 without restraints) Performing minimization step: 4069. Total energy = 1175.7755 kcal/mol (1173.8802 without restraints) Performing minimization step: 4070. Total energy = 1175.7257 kcal/mol (1173.8304 without restraints) Performing minimization step: 4071. Total energy = 1175.6759 kcal/mol (1173.7809 without restraints) Performing minimization step: 4072. Total energy = 1175.6262 kcal/mol (1173.7315 without restraints) Performing minimization step: 4073. Total energy = 1175.5765 kcal/mol (1173.6820 without restraints) Performing minimization step: 4074. Total energy = 1175.5268 kcal/mol (1173.6324 without restraints) Performing minimization step: 4075. Total energy = 1175.4768 kcal/mol (1173.5827 without restraints) Performing minimization step: 4076. Total energy = 1175.4271 kcal/mol (1173.5331 without restraints) Performing minimization step: 4077. Total energy = 1175.3774 kcal/mol (1173.4836 without restraints) Performing minimization step: 4078. Total energy = 1175.3276 kcal/mol (1173.4340 without restraints) Performing minimization step: 4079. Total energy = 1175.2779 kcal/mol (1173.3845 without restraints) Performing minimization step: 4080. Total energy = 1175.2282 kcal/mol (1173.3349 without restraints) Performing minimization step: 4081. Total energy = 1175.1782 kcal/mol (1173.2852 without restraints) Performing minimization step: 4082. Total energy = 1175.1284 kcal/mol (1173.2354 without restraints) Performing minimization step: 4083. Total energy = 1175.0785 kcal/mol (1173.1858 without restraints) Performing minimization step: 4084. Total energy = 1175.0287 kcal/mol (1173.1362 without restraints) Performing minimization step: 4085. Total energy = 1174.9790 kcal/mol (1173.0867 without restraints) Performing minimization step: 4086. Total energy = 1174.9297 kcal/mol (1173.0376 without restraints) Performing minimization step: 4087. Total energy = 1174.8797 kcal/mol (1172.9878 without restraints) Performing minimization step: 4088. Total energy = 1174.8300 kcal/mol (1172.9382 without restraints) Performing minimization step: 4089. Total energy = 1174.7796 kcal/mol (1172.8881 without restraints) Performing minimization step: 4090. Total energy = 1174.7299 kcal/mol (1172.8385 without restraints) Performing minimization step: 4091. Total energy = 1174.6801 kcal/mol (1172.7889 without restraints) Performing minimization step: 4092. Total energy = 1174.6300 kcal/mol (1172.7390 without restraints) Performing minimization step: 4093. Total energy = 1174.5801 kcal/mol (1172.6894 without restraints) Performing minimization step: 4094. Total energy = 1174.5306 kcal/mol (1172.6400 without restraints) Performing minimization step: 4095. Total energy = 1174.4806 kcal/mol (1172.5901 without restraints) Performing minimization step: 4096. Total energy = 1174.4305 kcal/mol (1172.5403 without restraints) Performing minimization step: 4097. Total energy = 1174.3807 kcal/mol (1172.4906 without restraints) Performing minimization step: 4098. Total energy = 1174.3309 kcal/mol (1172.4410 without restraints) Performing minimization step: 4099. Total energy = 1174.2811 kcal/mol (1172.3914 without restraints) Performing minimization step: 4100. Total energy = 1174.2313 kcal/mol (1172.3417 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 1174.1816 kcal/mol (1172.2923 without restraints) Performing minimization step: 4102. Total energy = 1174.1318 kcal/mol (1172.2426 without restraints) Performing minimization step: 4103. Total energy = 1174.0820 kcal/mol (1172.1930 without restraints) Performing minimization step: 4104. Total energy = 1174.0321 kcal/mol (1172.1433 without restraints) Performing minimization step: 4105. Total energy = 1173.9822 kcal/mol (1172.0936 without restraints) Performing minimization step: 4106. Total energy = 1173.9324 kcal/mol (1172.0440 without restraints) Performing minimization step: 4107. Total energy = 1173.8826 kcal/mol (1171.9943 without restraints) Performing minimization step: 4108. Total energy = 1173.8325 kcal/mol (1171.9444 without restraints) Performing minimization step: 4109. Total energy = 1173.7826 kcal/mol (1171.8947 without restraints) Performing minimization step: 4110. Total energy = 1173.7328 kcal/mol (1171.8450 without restraints) Performing minimization step: 4111. Total energy = 1173.6829 kcal/mol (1171.7954 without restraints) Performing minimization step: 4112. Total energy = 1173.6331 kcal/mol (1171.7458 without restraints) Performing minimization step: 4113. Total energy = 1173.5831 kcal/mol (1171.6959 without restraints) Performing minimization step: 4114. Total energy = 1173.5332 kcal/mol (1171.6462 without restraints) Performing minimization step: 4115. Total energy = 1173.4838 kcal/mol (1171.5969 without restraints) Performing minimization step: 4116. Total energy = 1173.4335 kcal/mol (1171.5467 without restraints) Performing minimization step: 4117. Total energy = 1173.3835 kcal/mol (1171.4970 without restraints) Performing minimization step: 4118. Total energy = 1173.3336 kcal/mol (1171.4473 without restraints) Performing minimization step: 4119. Total energy = 1173.2837 kcal/mol (1171.3975 without restraints) Performing minimization step: 4120. Total energy = 1173.2335 kcal/mol (1171.3476 without restraints) Performing minimization step: 4121. Total energy = 1173.1838 kcal/mol (1171.2980 without restraints) Performing minimization step: 4122. Total energy = 1173.1341 kcal/mol (1171.2485 without restraints) Performing minimization step: 4123. Total energy = 1173.0841 kcal/mol (1171.1988 without restraints) Performing minimization step: 4124. Total energy = 1173.0343 kcal/mol (1171.1491 without restraints) Performing minimization step: 4125. Total energy = 1172.9844 kcal/mol (1171.0994 without restraints) Performing minimization step: 4126. Total energy = 1172.9345 kcal/mol (1171.0497 without restraints) Performing minimization step: 4127. Total energy = 1172.8846 kcal/mol (1171.0000 without restraints) Performing minimization step: 4128. Total energy = 1172.8350 kcal/mol (1170.9505 without restraints) Performing minimization step: 4129. Total energy = 1172.7848 kcal/mol (1170.9005 without restraints) Performing minimization step: 4130. Total energy = 1172.7349 kcal/mol (1170.8508 without restraints) Performing minimization step: 4131. Total energy = 1172.6848 kcal/mol (1170.8008 without restraints) Performing minimization step: 4132. Total energy = 1172.6350 kcal/mol (1170.7511 without restraints) Performing minimization step: 4133. Total energy = 1172.5851 kcal/mol (1170.7014 without restraints) Performing minimization step: 4134. Total energy = 1172.5352 kcal/mol (1170.6517 without restraints) Performing minimization step: 4135. Total energy = 1172.4855 kcal/mol (1170.6022 without restraints) Performing minimization step: 4136. Total energy = 1172.4356 kcal/mol (1170.5525 without restraints) Performing minimization step: 4137. Total energy = 1172.3859 kcal/mol (1170.5030 without restraints) Performing minimization step: 4138. Total energy = 1172.3360 kcal/mol (1170.4533 without restraints) Performing minimization step: 4139. Total energy = 1172.2861 kcal/mol (1170.4036 without restraints) Performing minimization step: 4140. Total energy = 1172.2365 kcal/mol (1170.3541 without restraints) Performing minimization step: 4141. Total energy = 1172.1866 kcal/mol (1170.3044 without restraints) Performing minimization step: 4142. Total energy = 1172.1369 kcal/mol (1170.2548 without restraints) Performing minimization step: 4143. Total energy = 1172.0870 kcal/mol (1170.2051 without restraints) Performing minimization step: 4144. Total energy = 1172.0370 kcal/mol (1170.1552 without restraints) Performing minimization step: 4145. Total energy = 1171.9871 kcal/mol (1170.1055 without restraints) Performing minimization step: 4146. Total energy = 1171.9374 kcal/mol (1170.0560 without restraints) Performing minimization step: 4147. Total energy = 1171.8874 kcal/mol (1170.0061 without restraints) Performing minimization step: 4148. Total energy = 1171.8375 kcal/mol (1169.9564 without restraints) Performing minimization step: 4149. Total energy = 1171.7879 kcal/mol (1169.9071 without restraints) Performing minimization step: 4150. Total energy = 1171.7380 kcal/mol (1169.8574 without restraints) Performing minimization step: 4151. Total energy = 1171.6882 kcal/mol (1169.8077 without restraints) Performing minimization step: 4152. Total energy = 1171.6385 kcal/mol (1169.7581 without restraints) Performing minimization step: 4153. Total energy = 1171.5886 kcal/mol (1169.7084 without restraints) Performing minimization step: 4154. Total energy = 1171.5387 kcal/mol (1169.6587 without restraints) Performing minimization step: 4155. Total energy = 1171.4887 kcal/mol (1169.6088 without restraints) Performing minimization step: 4156. Total energy = 1171.4386 kcal/mol (1169.5589 without restraints) Performing minimization step: 4157. Total energy = 1171.3887 kcal/mol (1169.5092 without restraints) Performing minimization step: 4158. Total energy = 1171.3390 kcal/mol (1169.4598 without restraints) Performing minimization step: 4159. Total energy = 1171.2893 kcal/mol (1169.4101 without restraints) Performing minimization step: 4160. Total energy = 1171.2394 kcal/mol (1169.3604 without restraints) Performing minimization step: 4161. Total energy = 1171.1896 kcal/mol (1169.3108 without restraints) Performing minimization step: 4162. Total energy = 1171.1397 kcal/mol (1169.2611 without restraints) Performing minimization step: 4163. Total energy = 1171.0901 kcal/mol (1169.2116 without restraints) Performing minimization step: 4164. Total energy = 1171.0403 kcal/mol (1169.1620 without restraints) Performing minimization step: 4165. Total energy = 1170.9902 kcal/mol (1169.1121 without restraints) Performing minimization step: 4166. Total energy = 1170.9403 kcal/mol (1169.0624 without restraints) Performing minimization step: 4167. Total energy = 1170.8905 kcal/mol (1169.0127 without restraints) Performing minimization step: 4168. Total energy = 1170.8409 kcal/mol (1168.9633 without restraints) Performing minimization step: 4169. Total energy = 1170.7908 kcal/mol (1168.9134 without restraints) Performing minimization step: 4170. Total energy = 1170.7411 kcal/mol (1168.8638 without restraints) Performing minimization step: 4171. Total energy = 1170.6913 kcal/mol (1168.8142 without restraints) Performing minimization step: 4172. Total energy = 1170.6415 kcal/mol (1168.7645 without restraints) Performing minimization step: 4173. Total energy = 1170.5918 kcal/mol (1168.7151 without restraints) Performing minimization step: 4174. Total energy = 1170.5421 kcal/mol (1168.6654 without restraints) Performing minimization step: 4175. Total energy = 1170.4923 kcal/mol (1168.6158 without restraints) Performing minimization step: 4176. Total energy = 1170.4427 kcal/mol (1168.5664 without restraints) Performing minimization step: 4177. Total energy = 1170.3928 kcal/mol (1168.5166 without restraints) Performing minimization step: 4178. Total energy = 1170.3429 kcal/mol (1168.4669 without restraints) Performing minimization step: 4179. Total energy = 1170.2929 kcal/mol (1168.4171 without restraints) Performing minimization step: 4180. Total energy = 1170.2432 kcal/mol (1168.3677 without restraints) Performing minimization step: 4181. Total energy = 1170.1936 kcal/mol (1168.3181 without restraints) Performing minimization step: 4182. Total energy = 1170.1439 kcal/mol (1168.2686 without restraints) Performing minimization step: 4183. Total energy = 1170.0941 kcal/mol (1168.2190 without restraints) Performing minimization step: 4184. Total energy = 1170.0444 kcal/mol (1168.1694 without restraints) Performing minimization step: 4185. Total energy = 1169.9951 kcal/mol (1168.1203 without restraints) Performing minimization step: 4186. Total energy = 1169.9454 kcal/mol (1168.0707 without restraints) Performing minimization step: 4187. Total energy = 1169.8953 kcal/mol (1168.0208 without restraints) Performing minimization step: 4188. Total energy = 1169.8456 kcal/mol (1167.9713 without restraints) Performing minimization step: 4189. Total energy = 1169.7956 kcal/mol (1167.9215 without restraints) Performing minimization step: 4190. Total energy = 1169.7458 kcal/mol (1167.8718 without restraints) Performing minimization step: 4191. Total energy = 1169.6961 kcal/mol (1167.8223 without restraints) Performing minimization step: 4192. Total energy = 1169.6464 kcal/mol (1167.7726 without restraints) Performing minimization step: 4193. Total energy = 1169.5966 kcal/mol (1167.7231 without restraints) Performing minimization step: 4194. Total energy = 1169.5470 kcal/mol (1167.6737 without restraints) Performing minimization step: 4195. Total energy = 1169.4973 kcal/mol (1167.6242 without restraints) Performing minimization step: 4196. Total energy = 1169.4477 kcal/mol (1167.5747 without restraints) Performing minimization step: 4197. Total energy = 1169.3983 kcal/mol (1167.5257 without restraints) Performing minimization step: 4198. Total energy = 1169.3486 kcal/mol (1167.4760 without restraints) Performing minimization step: 4199. Total energy = 1169.2990 kcal/mol (1167.4265 without restraints) Performing minimization step: 4200. Total energy = 1169.2492 kcal/mol (1167.3769 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 1169.1996 kcal/mol (1167.3274 without restraints) Performing minimization step: 4202. Total energy = 1169.1497 kcal/mol (1167.2777 without restraints) Performing minimization step: 4203. Total energy = 1169.1001 kcal/mol (1167.2283 without restraints) Performing minimization step: 4204. Total energy = 1169.0504 kcal/mol (1167.1787 without restraints) Performing minimization step: 4205. Total energy = 1169.0008 kcal/mol (1167.1293 without restraints) Performing minimization step: 4206. Total energy = 1168.9513 kcal/mol (1167.0800 without restraints) Performing minimization step: 4207. Total energy = 1168.9018 kcal/mol (1167.0306 without restraints) Performing minimization step: 4208. Total energy = 1168.8523 kcal/mol (1166.9813 without restraints) Performing minimization step: 4209. Total energy = 1168.8028 kcal/mol (1166.9319 without restraints) Performing minimization step: 4210. Total energy = 1168.7533 kcal/mol (1166.8826 without restraints) Performing minimization step: 4211. Total energy = 1168.7038 kcal/mol (1166.8333 without restraints) Performing minimization step: 4212. Total energy = 1168.6542 kcal/mol (1166.7837 without restraints) Performing minimization step: 4213. Total energy = 1168.6046 kcal/mol (1166.7344 without restraints) Performing minimization step: 4214. Total energy = 1168.5551 kcal/mol (1166.6849 without restraints) Performing minimization step: 4215. Total energy = 1168.5055 kcal/mol (1166.6356 without restraints) Performing minimization step: 4216. Total energy = 1168.4562 kcal/mol (1166.5865 without restraints) Performing minimization step: 4217. Total energy = 1168.4068 kcal/mol (1166.5372 without restraints) Performing minimization step: 4218. Total energy = 1168.3578 kcal/mol (1166.4884 without restraints) Performing minimization step: 4219. Total energy = 1168.3083 kcal/mol (1166.4391 without restraints) Performing minimization step: 4220. Total energy = 1168.2590 kcal/mol (1166.3899 without restraints) Performing minimization step: 4221. Total energy = 1168.2099 kcal/mol (1166.3409 without restraints) Performing minimization step: 4222. Total energy = 1168.1605 kcal/mol (1166.2918 without restraints) Performing minimization step: 4223. Total energy = 1168.1109 kcal/mol (1166.2423 without restraints) Performing minimization step: 4224. Total energy = 1168.0616 kcal/mol (1166.1931 without restraints) Performing minimization step: 4225. Total energy = 1168.0123 kcal/mol (1166.1442 without restraints) Performing minimization step: 4226. Total energy = 1167.9632 kcal/mol (1166.0950 without restraints) Performing minimization step: 4227. Total energy = 1167.9139 kcal/mol (1166.0459 without restraints) Performing minimization step: 4228. Total energy = 1167.8646 kcal/mol (1165.9968 without restraints) Performing minimization step: 4229. Total energy = 1167.8155 kcal/mol (1165.9479 without restraints) Performing minimization step: 4230. Total energy = 1167.7663 kcal/mol (1165.8988 without restraints) Performing minimization step: 4231. Total energy = 1167.7170 kcal/mol (1165.8496 without restraints) Performing minimization step: 4232. Total energy = 1167.6678 kcal/mol (1165.8007 without restraints) Performing minimization step: 4233. Total energy = 1167.6187 kcal/mol (1165.7516 without restraints) Performing minimization step: 4234. Total energy = 1167.5695 kcal/mol (1165.7026 without restraints) Performing minimization step: 4235. Total energy = 1167.5201 kcal/mol (1165.6534 without restraints) Performing minimization step: 4236. Total energy = 1167.4711 kcal/mol (1165.6046 without restraints) Performing minimization step: 4237. Total energy = 1167.4215 kcal/mol (1165.5551 without restraints) Performing minimization step: 4238. Total energy = 1167.3726 kcal/mol (1165.5064 without restraints) Performing minimization step: 4239. Total energy = 1167.3235 kcal/mol (1165.4574 without restraints) Performing minimization step: 4240. Total energy = 1167.2744 kcal/mol (1165.4085 without restraints) Performing minimization step: 4241. Total energy = 1167.2251 kcal/mol (1165.3593 without restraints) Performing minimization step: 4242. Total energy = 1167.1760 kcal/mol (1165.3104 without restraints) Performing minimization step: 4243. Total energy = 1167.1271 kcal/mol (1165.2618 without restraints) Performing minimization step: 4244. Total energy = 1167.0782 kcal/mol (1165.2129 without restraints) Performing minimization step: 4245. Total energy = 1167.0292 kcal/mol (1165.1641 without restraints) Performing minimization step: 4246. Total energy = 1166.9802 kcal/mol (1165.1152 without restraints) Performing minimization step: 4247. Total energy = 1166.9312 kcal/mol (1165.0664 without restraints) Performing minimization step: 4248. Total energy = 1166.8822 kcal/mol (1165.0176 without restraints) Performing minimization step: 4249. Total energy = 1166.8333 kcal/mol (1164.9688 without restraints) Performing minimization step: 4250. Total energy = 1166.7843 kcal/mol (1164.9200 without restraints) Performing minimization step: 4251. Total energy = 1166.7354 kcal/mol (1164.8712 without restraints) Performing minimization step: 4252. Total energy = 1166.6865 kcal/mol (1164.8225 without restraints) Performing minimization step: 4253. Total energy = 1166.6376 kcal/mol (1164.7738 without restraints) Performing minimization step: 4254. Total energy = 1166.5890 kcal/mol (1164.7253 without restraints) Performing minimization step: 4255. Total energy = 1166.5401 kcal/mol (1164.6766 without restraints) Performing minimization step: 4256. Total energy = 1166.4913 kcal/mol (1164.6279 without restraints) Performing minimization step: 4257. Total energy = 1166.4425 kcal/mol (1164.5793 without restraints) Performing minimization step: 4258. Total energy = 1166.3937 kcal/mol (1164.5306 without restraints) Performing minimization step: 4259. Total energy = 1166.3449 kcal/mol (1164.4820 without restraints) Performing minimization step: 4260. Total energy = 1166.2962 kcal/mol (1164.4334 without restraints) Performing minimization step: 4261. Total energy = 1166.2471 kcal/mol (1164.3844 without restraints) Performing minimization step: 4262. Total energy = 1166.1981 kcal/mol (1164.3357 without restraints) Performing minimization step: 4263. Total energy = 1166.1494 kcal/mol (1164.2871 without restraints) Performing minimization step: 4264. Total energy = 1166.1007 kcal/mol (1164.2386 without restraints) Performing minimization step: 4265. Total energy = 1166.0520 kcal/mol (1164.1899 without restraints) Performing minimization step: 4266. Total energy = 1166.0034 kcal/mol (1164.1417 without restraints) Performing minimization step: 4267. Total energy = 1165.9549 kcal/mol (1164.0933 without restraints) Performing minimization step: 4268. Total energy = 1165.9063 kcal/mol (1164.0448 without restraints) Performing minimization step: 4269. Total energy = 1165.8577 kcal/mol (1163.9964 without restraints) Performing minimization step: 4270. Total energy = 1165.8092 kcal/mol (1163.9479 without restraints) Performing minimization step: 4271. Total energy = 1165.7606 kcal/mol (1163.8995 without restraints) Performing minimization step: 4272. Total energy = 1165.7121 kcal/mol (1163.8511 without restraints) Performing minimization step: 4273. Total energy = 1165.6635 kcal/mol (1163.8027 without restraints) Performing minimization step: 4274. Total energy = 1165.6150 kcal/mol (1163.7544 without restraints) Performing minimization step: 4275. Total energy = 1165.5665 kcal/mol (1163.7061 without restraints) Performing minimization step: 4276. Total energy = 1165.5181 kcal/mol (1163.6578 without restraints) Performing minimization step: 4277. Total energy = 1165.4696 kcal/mol (1163.6095 without restraints) Performing minimization step: 4278. Total energy = 1165.4216 kcal/mol (1163.5616 without restraints) Performing minimization step: 4279. Total energy = 1165.3732 kcal/mol (1163.5134 without restraints) Performing minimization step: 4280. Total energy = 1165.3246 kcal/mol (1163.4649 without restraints) Performing minimization step: 4281. Total energy = 1165.2764 kcal/mol (1163.4169 without restraints) Performing minimization step: 4282. Total energy = 1165.2279 kcal/mol (1163.3686 without restraints) Performing minimization step: 4283. Total energy = 1165.1798 kcal/mol (1163.3206 without restraints) Performing minimization step: 4284. Total energy = 1165.1316 kcal/mol (1163.2725 without restraints) Performing minimization step: 4285. Total energy = 1165.0833 kcal/mol (1163.2244 without restraints) Performing minimization step: 4286. Total energy = 1165.0353 kcal/mol (1163.1765 without restraints) Performing minimization step: 4287. Total energy = 1164.9870 kcal/mol (1163.1284 without restraints) Performing minimization step: 4288. Total energy = 1164.9388 kcal/mol (1163.0804 without restraints) Performing minimization step: 4289. Total energy = 1164.8906 kcal/mol (1163.0323 without restraints) Performing minimization step: 4290. Total energy = 1164.8425 kcal/mol (1162.9844 without restraints) Performing minimization step: 4291. Total energy = 1164.7940 kcal/mol (1162.9359 without restraints) Performing minimization step: 4292. Total energy = 1164.7458 kcal/mol (1162.8879 without restraints) Performing minimization step: 4293. Total energy = 1164.6977 kcal/mol (1162.8400 without restraints) Performing minimization step: 4294. Total energy = 1164.6501 kcal/mol (1162.7926 without restraints) Performing minimization step: 4295. Total energy = 1164.6023 kcal/mol (1162.7449 without restraints) Performing minimization step: 4296. Total energy = 1164.5544 kcal/mol (1162.6972 without restraints) Performing minimization step: 4297. Total energy = 1164.5063 kcal/mol (1162.6492 without restraints) Performing minimization step: 4298. Total energy = 1164.4583 kcal/mol (1162.6013 without restraints) Performing minimization step: 4299. Total energy = 1164.4098 kcal/mol (1162.5530 without restraints) Performing minimization step: 4300. Total energy = 1164.3616 kcal/mol (1162.5050 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 1164.3139 kcal/mol (1162.4574 without restraints) Performing minimization step: 4302. Total energy = 1164.2661 kcal/mol (1162.4098 without restraints) Performing minimization step: 4303. Total energy = 1164.2183 kcal/mol (1162.3621 without restraints) Performing minimization step: 4304. Total energy = 1164.1704 kcal/mol (1162.3144 without restraints) Performing minimization step: 4305. Total energy = 1164.1223 kcal/mol (1162.2665 without restraints) Performing minimization step: 4306. Total energy = 1164.0744 kcal/mol (1162.2186 without restraints) Performing minimization step: 4307. Total energy = 1164.0266 kcal/mol (1162.1710 without restraints) Performing minimization step: 4308. Total energy = 1163.9788 kcal/mol (1162.1233 without restraints) Performing minimization step: 4309. Total energy = 1163.9310 kcal/mol (1162.0757 without restraints) Performing minimization step: 4310. Total energy = 1163.8833 kcal/mol (1162.0281 without restraints) Performing minimization step: 4311. Total energy = 1163.8356 kcal/mol (1161.9806 without restraints) Performing minimization step: 4312. Total energy = 1163.7879 kcal/mol (1161.9331 without restraints) Performing minimization step: 4313. Total energy = 1163.7403 kcal/mol (1161.8856 without restraints) Performing minimization step: 4314. Total energy = 1163.6927 kcal/mol (1161.8381 without restraints) Performing minimization step: 4315. Total energy = 1163.6451 kcal/mol (1161.7907 without restraints) Performing minimization step: 4316. Total energy = 1163.5977 kcal/mol (1161.7434 without restraints) Performing minimization step: 4317. Total energy = 1163.5503 kcal/mol (1161.6962 without restraints) Performing minimization step: 4318. Total energy = 1163.5028 kcal/mol (1161.6488 without restraints) Performing minimization step: 4319. Total energy = 1163.4554 kcal/mol (1161.6017 without restraints) Performing minimization step: 4320. Total energy = 1163.4079 kcal/mol (1161.5542 without restraints) Performing minimization step: 4321. Total energy = 1163.3604 kcal/mol (1161.5069 without restraints) Performing minimization step: 4322. Total energy = 1163.3127 kcal/mol (1161.4592 without restraints) Performing minimization step: 4323. Total energy = 1163.2657 kcal/mol (1161.4126 without restraints) Performing minimization step: 4324. Total energy = 1163.2180 kcal/mol (1161.3648 without restraints) Performing minimization step: 4325. Total energy = 1163.1705 kcal/mol (1161.3176 without restraints) Performing minimization step: 4326. Total energy = 1163.1232 kcal/mol (1161.2704 without restraints) Performing minimization step: 4327. Total energy = 1163.0759 kcal/mol (1161.2233 without restraints) Performing minimization step: 4328. Total energy = 1163.0288 kcal/mol (1161.1763 without restraints) Performing minimization step: 4329. Total energy = 1162.9814 kcal/mol (1161.1292 without restraints) Performing minimization step: 4330. Total energy = 1162.9344 kcal/mol (1161.0823 without restraints) Performing minimization step: 4331. Total energy = 1162.8872 kcal/mol (1161.0352 without restraints) Performing minimization step: 4332. Total energy = 1162.8406 kcal/mol (1160.9888 without restraints) Performing minimization step: 4333. Total energy = 1162.7934 kcal/mol (1160.9417 without restraints) Performing minimization step: 4334. Total energy = 1162.7463 kcal/mol (1160.8947 without restraints) Performing minimization step: 4335. Total energy = 1162.6991 kcal/mol (1160.8477 without restraints) Performing minimization step: 4336. Total energy = 1162.6520 kcal/mol (1160.8008 without restraints) Performing minimization step: 4337. Total energy = 1162.6051 kcal/mol (1160.7541 without restraints) Performing minimization step: 4338. Total energy = 1162.5585 kcal/mol (1160.7076 without restraints) Performing minimization step: 4339. Total energy = 1162.5110 kcal/mol (1160.6602 without restraints) Performing minimization step: 4340. Total energy = 1162.4642 kcal/mol (1160.6135 without restraints) Performing minimization step: 4341. Total energy = 1162.4174 kcal/mol (1160.5669 without restraints) Performing minimization step: 4342. Total energy = 1162.3704 kcal/mol (1160.5200 without restraints) Performing minimization step: 4343. Total energy = 1162.3235 kcal/mol (1160.4732 without restraints) Performing minimization step: 4344. Total energy = 1162.2765 kcal/mol (1160.4264 without restraints) Performing minimization step: 4345. Total energy = 1162.2296 kcal/mol (1160.3797 without restraints) Performing minimization step: 4346. Total energy = 1162.1827 kcal/mol (1160.3329 without restraints) Performing minimization step: 4347. Total energy = 1162.1359 kcal/mol (1160.2863 without restraints) Performing minimization step: 4348. Total energy = 1162.0893 kcal/mol (1160.2398 without restraints) Performing minimization step: 4349. Total energy = 1162.0425 kcal/mol (1160.1931 without restraints) Performing minimization step: 4350. Total energy = 1161.9957 kcal/mol (1160.1465 without restraints) Performing minimization step: 4351. Total energy = 1161.9494 kcal/mol (1160.1003 without restraints) Performing minimization step: 4352. Total energy = 1161.9026 kcal/mol (1160.0537 without restraints) Performing minimization step: 4353. Total energy = 1161.8559 kcal/mol (1160.0071 without restraints) Performing minimization step: 4354. Total energy = 1161.8092 kcal/mol (1159.9606 without restraints) Performing minimization step: 4355. Total energy = 1161.7624 kcal/mol (1159.9139 without restraints) Performing minimization step: 4356. Total energy = 1161.7158 kcal/mol (1159.8674 without restraints) Performing minimization step: 4357. Total energy = 1161.6692 kcal/mol (1159.8210 without restraints) Performing minimization step: 4358. Total energy = 1161.6228 kcal/mol (1159.7747 without restraints) Performing minimization step: 4359. Total energy = 1161.5762 kcal/mol (1159.7283 without restraints) Performing minimization step: 4360. Total energy = 1161.5296 kcal/mol (1159.6819 without restraints) Performing minimization step: 4361. Total energy = 1161.4830 kcal/mol (1159.6354 without restraints) Performing minimization step: 4362. Total energy = 1161.4363 kcal/mol (1159.5888 without restraints) Performing minimization step: 4363. Total energy = 1161.3898 kcal/mol (1159.5425 without restraints) Performing minimization step: 4364. Total energy = 1161.3434 kcal/mol (1159.4962 without restraints) Performing minimization step: 4365. Total energy = 1161.2968 kcal/mol (1159.4498 without restraints) Performing minimization step: 4366. Total energy = 1161.2504 kcal/mol (1159.4036 without restraints) Performing minimization step: 4367. Total energy = 1161.2041 kcal/mol (1159.3574 without restraints) Performing minimization step: 4368. Total energy = 1161.1577 kcal/mol (1159.3112 without restraints) Performing minimization step: 4369. Total energy = 1161.1117 kcal/mol (1159.2652 without restraints) Performing minimization step: 4370. Total energy = 1161.0654 kcal/mol (1159.2191 without restraints) Performing minimization step: 4371. Total energy = 1161.0192 kcal/mol (1159.1729 without restraints) Performing minimization step: 4372. Total energy = 1160.9731 kcal/mol (1159.1270 without restraints) Performing minimization step: 4373. Total energy = 1160.9265 kcal/mol (1159.0805 without restraints) Performing minimization step: 4374. Total energy = 1160.8801 kcal/mol (1159.0344 without restraints) Performing minimization step: 4375. Total energy = 1160.8340 kcal/mol (1158.9884 without restraints) Performing minimization step: 4376. Total energy = 1160.7879 kcal/mol (1158.9424 without restraints) Performing minimization step: 4377. Total energy = 1160.7419 kcal/mol (1158.8967 without restraints) Performing minimization step: 4378. Total energy = 1160.6958 kcal/mol (1158.8507 without restraints) Performing minimization step: 4379. Total energy = 1160.6497 kcal/mol (1158.8047 without restraints) Performing minimization step: 4380. Total energy = 1160.6037 kcal/mol (1158.7588 without restraints) Performing minimization step: 4381. Total energy = 1160.5577 kcal/mol (1158.7129 without restraints) Performing minimization step: 4382. Total energy = 1160.5117 kcal/mol (1158.6671 without restraints) Performing minimization step: 4383. Total energy = 1160.4657 kcal/mol (1158.6212 without restraints) Performing minimization step: 4384. Total energy = 1160.4198 kcal/mol (1158.5756 without restraints) Performing minimization step: 4385. Total energy = 1160.3743 kcal/mol (1158.5302 without restraints) Performing minimization step: 4386. Total energy = 1160.3284 kcal/mol (1158.4844 without restraints) Performing minimization step: 4387. Total energy = 1160.2825 kcal/mol (1158.4386 without restraints) Performing minimization step: 4388. Total energy = 1160.2366 kcal/mol (1158.3929 without restraints) Performing minimization step: 4389. Total energy = 1160.1908 kcal/mol (1158.3472 without restraints) Performing minimization step: 4390. Total energy = 1160.1448 kcal/mol (1158.3015 without restraints) Performing minimization step: 4391. Total energy = 1160.0991 kcal/mol (1158.2559 without restraints) Performing minimization step: 4392. Total energy = 1160.0534 kcal/mol (1158.2103 without restraints) Performing minimization step: 4393. Total energy = 1160.0074 kcal/mol (1158.1642 without restraints) Performing minimization step: 4394. Total energy = 1159.9616 kcal/mol (1158.1187 without restraints) Performing minimization step: 4395. Total energy = 1159.9158 kcal/mol (1158.0730 without restraints) Performing minimization step: 4396. Total energy = 1159.8701 kcal/mol (1158.0275 without restraints) Performing minimization step: 4397. Total energy = 1159.8244 kcal/mol (1157.9820 without restraints) Performing minimization step: 4398. Total energy = 1159.7786 kcal/mol (1157.9363 without restraints) Performing minimization step: 4399. Total energy = 1159.7332 kcal/mol (1157.8911 without restraints) Performing minimization step: 4400. Total energy = 1159.6877 kcal/mol (1157.8457 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 1159.6421 kcal/mol (1157.8003 without restraints) Performing minimization step: 4402. Total energy = 1159.5968 kcal/mol (1157.7551 without restraints) Performing minimization step: 4403. Total energy = 1159.5513 kcal/mol (1157.7097 without restraints) Performing minimization step: 4404. Total energy = 1159.5058 kcal/mol (1157.6644 without restraints) Performing minimization step: 4405. Total energy = 1159.4604 kcal/mol (1157.6190 without restraints) Performing minimization step: 4406. Total energy = 1159.4149 kcal/mol (1157.5738 without restraints) Performing minimization step: 4407. Total energy = 1159.3696 kcal/mol (1157.5285 without restraints) Performing minimization step: 4408. Total energy = 1159.3244 kcal/mol (1157.4835 without restraints) Performing minimization step: 4409. Total energy = 1159.2790 kcal/mol (1157.4382 without restraints) Performing minimization step: 4410. Total energy = 1159.2337 kcal/mol (1157.3930 without restraints) Performing minimization step: 4411. Total energy = 1159.1883 kcal/mol (1157.3479 without restraints) Performing minimization step: 4412. Total energy = 1159.1430 kcal/mol (1157.3027 without restraints) Performing minimization step: 4413. Total energy = 1159.0975 kcal/mol (1157.2573 without restraints) Performing minimization step: 4414. Total energy = 1159.0523 kcal/mol (1157.2122 without restraints) Performing minimization step: 4415. Total energy = 1159.0074 kcal/mol (1157.1676 without restraints) Performing minimization step: 4416. Total energy = 1158.9623 kcal/mol (1157.1225 without restraints) Performing minimization step: 4417. Total energy = 1158.9167 kcal/mol (1157.0771 without restraints) Performing minimization step: 4418. Total energy = 1158.8715 kcal/mol (1157.0320 without restraints) Performing minimization step: 4419. Total energy = 1158.8264 kcal/mol (1156.9870 without restraints) Performing minimization step: 4420. Total energy = 1158.7813 kcal/mol (1156.9421 without restraints) Performing minimization step: 4421. Total energy = 1158.7365 kcal/mol (1156.8975 without restraints) Performing minimization step: 4422. Total energy = 1158.6914 kcal/mol (1156.8525 without restraints) Performing minimization step: 4423. Total energy = 1158.6461 kcal/mol (1156.8073 without restraints) Performing minimization step: 4424. Total energy = 1158.6015 kcal/mol (1156.7629 without restraints) Performing minimization step: 4425. Total energy = 1158.5567 kcal/mol (1156.7182 without restraints) Performing minimization step: 4426. Total energy = 1158.5118 kcal/mol (1156.6734 without restraints) Performing minimization step: 4427. Total energy = 1158.4668 kcal/mol (1156.6286 without restraints) Performing minimization step: 4428. Total energy = 1158.4222 kcal/mol (1156.5841 without restraints) Performing minimization step: 4429. Total energy = 1158.3773 kcal/mol (1156.5393 without restraints) Performing minimization step: 4430. Total energy = 1158.3323 kcal/mol (1156.4945 without restraints) Performing minimization step: 4431. Total energy = 1158.2882 kcal/mol (1156.4508 without restraints) Performing minimization step: 4432. Total energy = 1158.2437 kcal/mol (1156.4061 without restraints) Performing minimization step: 4433. Total energy = 1158.1988 kcal/mol (1156.3614 without restraints) Performing minimization step: 4434. Total energy = 1158.1540 kcal/mol (1156.3167 without restraints) Performing minimization step: 4435. Total energy = 1158.1094 kcal/mol (1156.2723 without restraints) Performing minimization step: 4436. Total energy = 1158.0645 kcal/mol (1156.2277 without restraints) Performing minimization step: 4437. Total energy = 1158.0199 kcal/mol (1156.1831 without restraints) Performing minimization step: 4438. Total energy = 1157.9752 kcal/mol (1156.1385 without restraints) Performing minimization step: 4439. Total energy = 1157.9307 kcal/mol (1156.0941 without restraints) Performing minimization step: 4440. Total energy = 1157.8860 kcal/mol (1156.0496 without restraints) Performing minimization step: 4441. Total energy = 1157.8416 kcal/mol (1156.0052 without restraints) Performing minimization step: 4442. Total energy = 1157.7969 kcal/mol (1155.9608 without restraints) Performing minimization step: 4443. Total energy = 1157.7523 kcal/mol (1155.9162 without restraints) Performing minimization step: 4444. Total energy = 1157.7075 kcal/mol (1155.8716 without restraints) Performing minimization step: 4445. Total energy = 1157.6627 kcal/mol (1155.8269 without restraints) Performing minimization step: 4446. Total energy = 1157.6182 kcal/mol (1155.7826 without restraints) Performing minimization step: 4447. Total energy = 1157.5736 kcal/mol (1155.7382 without restraints) Performing minimization step: 4448. Total energy = 1157.5291 kcal/mol (1155.6938 without restraints) Performing minimization step: 4449. Total energy = 1157.4847 kcal/mol (1155.6495 without restraints) Performing minimization step: 4450. Total energy = 1157.4402 kcal/mol (1155.6051 without restraints) Performing minimization step: 4451. Total energy = 1157.3957 kcal/mol (1155.5608 without restraints) Performing minimization step: 4452. Total energy = 1157.3513 kcal/mol (1155.5165 without restraints) Performing minimization step: 4453. Total energy = 1157.3070 kcal/mol (1155.4723 without restraints) Performing minimization step: 4454. Total energy = 1157.2626 kcal/mol (1155.4281 without restraints) Performing minimization step: 4455. Total energy = 1157.2184 kcal/mol (1155.3840 without restraints) Performing minimization step: 4456. Total energy = 1157.1738 kcal/mol (1155.3396 without restraints) Performing minimization step: 4457. Total energy = 1157.1295 kcal/mol (1155.2954 without restraints) Performing minimization step: 4458. Total energy = 1157.0852 kcal/mol (1155.2512 without restraints) Performing minimization step: 4459. Total energy = 1157.0409 kcal/mol (1155.2070 without restraints) Performing minimization step: 4460. Total energy = 1156.9967 kcal/mol (1155.1629 without restraints) Performing minimization step: 4461. Total energy = 1156.9524 kcal/mol (1155.1188 without restraints) Performing minimization step: 4462. Total energy = 1156.9082 kcal/mol (1155.0747 without restraints) Performing minimization step: 4463. Total energy = 1156.8640 kcal/mol (1155.0307 without restraints) Performing minimization step: 4464. Total energy = 1156.8198 kcal/mol (1154.9866 without restraints) Performing minimization step: 4465. Total energy = 1156.7757 kcal/mol (1154.9426 without restraints) Performing minimization step: 4466. Total energy = 1156.7316 kcal/mol (1154.8986 without restraints) Performing minimization step: 4467. Total energy = 1156.6874 kcal/mol (1154.8546 without restraints) Performing minimization step: 4468. Total energy = 1156.6430 kcal/mol (1154.8103 without restraints) Performing minimization step: 4469. Total energy = 1156.5989 kcal/mol (1154.7664 without restraints) Performing minimization step: 4470. Total energy = 1156.5547 kcal/mol (1154.7223 without restraints) Performing minimization step: 4471. Total energy = 1156.5106 kcal/mol (1154.6784 without restraints) Performing minimization step: 4472. Total energy = 1156.4666 kcal/mol (1154.6345 without restraints) Performing minimization step: 4473. Total energy = 1156.4226 kcal/mol (1154.5906 without restraints) Performing minimization step: 4474. Total energy = 1156.3785 kcal/mol (1154.5465 without restraints) Performing minimization step: 4475. Total energy = 1156.3342 kcal/mol (1154.5025 without restraints) Performing minimization step: 4476. Total energy = 1156.2903 kcal/mol (1154.4587 without restraints) Performing minimization step: 4477. Total energy = 1156.2466 kcal/mol (1154.4151 without restraints) Performing minimization step: 4478. Total energy = 1156.2023 kcal/mol (1154.3709 without restraints) Performing minimization step: 4479. Total energy = 1156.1584 kcal/mol (1154.3272 without restraints) Performing minimization step: 4480. Total energy = 1156.1145 kcal/mol (1154.2834 without restraints) Performing minimization step: 4481. Total energy = 1156.0706 kcal/mol (1154.2397 without restraints) Performing minimization step: 4482. Total energy = 1156.0268 kcal/mol (1154.1960 without restraints) Performing minimization step: 4483. Total energy = 1155.9828 kcal/mol (1154.1519 without restraints) Performing minimization step: 4484. Total energy = 1155.9388 kcal/mol (1154.1083 without restraints) Performing minimization step: 4485. Total energy = 1155.8948 kcal/mol (1154.0644 without restraints) Performing minimization step: 4486. Total energy = 1155.8513 kcal/mol (1154.0210 without restraints) Performing minimization step: 4487. Total energy = 1155.8075 kcal/mol (1153.9774 without restraints) Performing minimization step: 4488. Total energy = 1155.7639 kcal/mol (1153.9339 without restraints) Performing minimization step: 4489. Total energy = 1155.7202 kcal/mol (1153.8903 without restraints) Performing minimization step: 4490. Total energy = 1155.6765 kcal/mol (1153.8467 without restraints) Performing minimization step: 4491. Total energy = 1155.6328 kcal/mol (1153.8032 without restraints) Performing minimization step: 4492. Total energy = 1155.5891 kcal/mol (1153.7596 without restraints) Performing minimization step: 4493. Total energy = 1155.5454 kcal/mol (1153.7161 without restraints) Performing minimization step: 4494. Total energy = 1155.5018 kcal/mol (1153.6725 without restraints) Performing minimization step: 4495. Total energy = 1155.4584 kcal/mol (1153.6293 without restraints) Performing minimization step: 4496. Total energy = 1155.4148 kcal/mol (1153.5858 without restraints) Performing minimization step: 4497. Total energy = 1155.3714 kcal/mol (1153.5427 without restraints) Performing minimization step: 4498. Total energy = 1155.3280 kcal/mol (1153.4993 without restraints) Performing minimization step: 4499. Total energy = 1155.2847 kcal/mol (1153.4561 without restraints) Performing minimization step: 4500. Total energy = 1155.2410 kcal/mol (1153.4126 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 1155.1975 kcal/mol (1153.3692 without restraints) Performing minimization step: 4502. Total energy = 1155.1541 kcal/mol (1153.3259 without restraints) Performing minimization step: 4503. Total energy = 1155.1106 kcal/mol (1153.2826 without restraints) Performing minimization step: 4504. Total energy = 1155.0672 kcal/mol (1153.2393 without restraints) Performing minimization step: 4505. Total energy = 1155.0236 kcal/mol (1153.1958 without restraints) Performing minimization step: 4506. Total energy = 1154.9802 kcal/mol (1153.1525 without restraints) Performing minimization step: 4507. Total energy = 1154.9368 kcal/mol (1153.1093 without restraints) Performing minimization step: 4508. Total energy = 1154.8934 kcal/mol (1153.0660 without restraints) Performing minimization step: 4509. Total energy = 1154.8501 kcal/mol (1153.0228 without restraints) Performing minimization step: 4510. Total energy = 1154.8068 kcal/mol (1152.9796 without restraints) Performing minimization step: 4511. Total energy = 1154.7635 kcal/mol (1152.9364 without restraints) Performing minimization step: 4512. Total energy = 1154.7203 kcal/mol (1152.8935 without restraints) Performing minimization step: 4513. Total energy = 1154.6771 kcal/mol (1152.8504 without restraints) Performing minimization step: 4514. Total energy = 1154.6339 kcal/mol (1152.8072 without restraints) Performing minimization step: 4515. Total energy = 1154.5906 kcal/mol (1152.7641 without restraints) Performing minimization step: 4516. Total energy = 1154.5472 kcal/mol (1152.7208 without restraints) Performing minimization step: 4517. Total energy = 1154.5040 kcal/mol (1152.6779 without restraints) Performing minimization step: 4518. Total energy = 1154.4607 kcal/mol (1152.6346 without restraints) Performing minimization step: 4519. Total energy = 1154.4176 kcal/mol (1152.5916 without restraints) Performing minimization step: 4520. Total energy = 1154.3744 kcal/mol (1152.5485 without restraints) Performing minimization step: 4521. Total energy = 1154.3314 kcal/mol (1152.5057 without restraints) Performing minimization step: 4522. Total energy = 1154.2883 kcal/mol (1152.4627 without restraints) Performing minimization step: 4523. Total energy = 1154.2452 kcal/mol (1152.4197 without restraints) Performing minimization step: 4524. Total energy = 1154.2021 kcal/mol (1152.3767 without restraints) Performing minimization step: 4525. Total energy = 1154.1594 kcal/mol (1152.3341 without restraints) Performing minimization step: 4526. Total energy = 1154.1164 kcal/mol (1152.2912 without restraints) Performing minimization step: 4527. Total energy = 1154.0732 kcal/mol (1152.2482 without restraints) Performing minimization step: 4528. Total energy = 1154.0299 kcal/mol (1152.2051 without restraints) Performing minimization step: 4529. Total energy = 1153.9869 kcal/mol (1152.1621 without restraints) Performing minimization step: 4530. Total energy = 1153.9440 kcal/mol (1152.1194 without restraints) Performing minimization step: 4531. Total energy = 1153.9008 kcal/mol (1152.0763 without restraints) Performing minimization step: 4532. Total energy = 1153.8576 kcal/mol (1152.0332 without restraints) Performing minimization step: 4533. Total energy = 1153.8146 kcal/mol (1151.9904 without restraints) Performing minimization step: 4534. Total energy = 1153.7716 kcal/mol (1151.9475 without restraints) Performing minimization step: 4535. Total energy = 1153.7287 kcal/mol (1151.9047 without restraints) Performing minimization step: 4536. Total energy = 1153.6861 kcal/mol (1151.8625 without restraints) Performing minimization step: 4537. Total energy = 1153.6436 kcal/mol (1151.8199 without restraints) Performing minimization step: 4538. Total energy = 1153.6007 kcal/mol (1151.7771 without restraints) Performing minimization step: 4539. Total energy = 1153.5578 kcal/mol (1151.7343 without restraints) Performing minimization step: 4540. Total energy = 1153.5150 kcal/mol (1151.6916 without restraints) Performing minimization step: 4541. Total energy = 1153.4721 kcal/mol (1151.6489 without restraints) Performing minimization step: 4542. Total energy = 1153.4293 kcal/mol (1151.6062 without restraints) Performing minimization step: 4543. Total energy = 1153.3867 kcal/mol (1151.5636 without restraints) Performing minimization step: 4544. Total energy = 1153.3439 kcal/mol (1151.5211 without restraints) Performing minimization step: 4545. Total energy = 1153.3012 kcal/mol (1151.4784 without restraints) Performing minimization step: 4546. Total energy = 1153.2584 kcal/mol (1151.4358 without restraints) Performing minimization step: 4547. Total energy = 1153.2156 kcal/mol (1151.3931 without restraints) Performing minimization step: 4548. Total energy = 1153.1728 kcal/mol (1151.3505 without restraints) Performing minimization step: 4549. Total energy = 1153.1301 kcal/mol (1151.3079 without restraints) Performing minimization step: 4550. Total energy = 1153.0872 kcal/mol (1151.2650 without restraints) Performing minimization step: 4551. Total energy = 1153.0445 kcal/mol (1151.2225 without restraints) Performing minimization step: 4552. Total energy = 1153.0018 kcal/mol (1151.1799 without restraints) Performing minimization step: 4553. Total energy = 1152.9591 kcal/mol (1151.1374 without restraints) Performing minimization step: 4554. Total energy = 1152.9165 kcal/mol (1151.0949 without restraints) Performing minimization step: 4555. Total energy = 1152.8741 kcal/mol (1151.0526 without restraints) Performing minimization step: 4556. Total energy = 1152.8314 kcal/mol (1151.0101 without restraints) Performing minimization step: 4557. Total energy = 1152.7888 kcal/mol (1150.9676 without restraints) Performing minimization step: 4558. Total energy = 1152.7462 kcal/mol (1150.9251 without restraints) Performing minimization step: 4559. Total energy = 1152.7037 kcal/mol (1150.8828 without restraints) Performing minimization step: 4560. Total energy = 1152.6613 kcal/mol (1150.8404 without restraints) Performing minimization step: 4561. Total energy = 1152.6188 kcal/mol (1150.7980 without restraints) Performing minimization step: 4562. Total energy = 1152.5762 kcal/mol (1150.7556 without restraints) Performing minimization step: 4563. Total energy = 1152.5337 kcal/mol (1150.7131 without restraints) Performing minimization step: 4564. Total energy = 1152.4914 kcal/mol (1150.6710 without restraints) Performing minimization step: 4565. Total energy = 1152.4489 kcal/mol (1150.6286 without restraints) Performing minimization step: 4566. Total energy = 1152.4064 kcal/mol (1150.5862 without restraints) Performing minimization step: 4567. Total energy = 1152.3639 kcal/mol (1150.5439 without restraints) Performing minimization step: 4568. Total energy = 1152.3217 kcal/mol (1150.5018 without restraints) Performing minimization step: 4569. Total energy = 1152.2793 kcal/mol (1150.4595 without restraints) Performing minimization step: 4570. Total energy = 1152.2370 kcal/mol (1150.4173 without restraints) Performing minimization step: 4571. Total energy = 1152.1944 kcal/mol (1150.3748 without restraints) Performing minimization step: 4572. Total energy = 1152.1521 kcal/mol (1150.3328 without restraints) Performing minimization step: 4573. Total energy = 1152.1096 kcal/mol (1150.2903 without restraints) Performing minimization step: 4574. Total energy = 1152.0672 kcal/mol (1150.2480 without restraints) Performing minimization step: 4575. Total energy = 1152.0249 kcal/mol (1150.2058 without restraints) Performing minimization step: 4576. Total energy = 1151.9825 kcal/mol (1150.1636 without restraints) Performing minimization step: 4577. Total energy = 1151.9402 kcal/mol (1150.1214 without restraints) Performing minimization step: 4578. Total energy = 1151.8979 kcal/mol (1150.0792 without restraints) Performing minimization step: 4579. Total energy = 1151.8556 kcal/mol (1150.0368 without restraints) Performing minimization step: 4580. Total energy = 1151.8129 kcal/mol (1149.9944 without restraints) Performing minimization step: 4581. Total energy = 1151.7706 kcal/mol (1149.9522 without restraints) Performing minimization step: 4582. Total energy = 1151.7283 kcal/mol (1149.9101 without restraints) Performing minimization step: 4583. Total energy = 1151.6861 kcal/mol (1149.8680 without restraints) Performing minimization step: 4584. Total energy = 1151.6438 kcal/mol (1149.8258 without restraints) Performing minimization step: 4585. Total energy = 1151.6016 kcal/mol (1149.7837 without restraints) Performing minimization step: 4586. Total energy = 1151.5594 kcal/mol (1149.7416 without restraints) Performing minimization step: 4587. Total energy = 1151.5172 kcal/mol (1149.6995 without restraints) Performing minimization step: 4588. Total energy = 1151.4752 kcal/mol (1149.6577 without restraints) Performing minimization step: 4589. Total energy = 1151.4330 kcal/mol (1149.6156 without restraints) Performing minimization step: 4590. Total energy = 1151.3906 kcal/mol (1149.5733 without restraints) Performing minimization step: 4591. Total energy = 1151.3485 kcal/mol (1149.5313 without restraints) Performing minimization step: 4592. Total energy = 1151.3063 kcal/mol (1149.4893 without restraints) Performing minimization step: 4593. Total energy = 1151.2642 kcal/mol (1149.4473 without restraints) Performing minimization step: 4594. Total energy = 1151.2221 kcal/mol (1149.4053 without restraints) Performing minimization step: 4595. Total energy = 1151.1800 kcal/mol (1149.3633 without restraints) Performing minimization step: 4596. Total energy = 1151.1379 kcal/mol (1149.3213 without restraints) Performing minimization step: 4597. Total energy = 1151.0958 kcal/mol (1149.2793 without restraints) Performing minimization step: 4598. Total energy = 1151.0535 kcal/mol (1149.2372 without restraints) Performing minimization step: 4599. Total energy = 1151.0113 kcal/mol (1149.1951 without restraints) Performing minimization step: 4600. Total energy = 1150.9693 kcal/mol (1149.1531 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 1150.9276 kcal/mol (1149.1116 without restraints) Performing minimization step: 4602. Total energy = 1150.8856 kcal/mol (1149.0697 without restraints) Performing minimization step: 4603. Total energy = 1150.8438 kcal/mol (1149.0280 without restraints) Performing minimization step: 4604. Total energy = 1150.8018 kcal/mol (1148.9862 without restraints) Performing minimization step: 4605. Total energy = 1150.7598 kcal/mol (1148.9443 without restraints) Performing minimization step: 4606. Total energy = 1150.7179 kcal/mol (1148.9025 without restraints) Performing minimization step: 4607. Total energy = 1150.6758 kcal/mol (1148.8605 without restraints) Performing minimization step: 4608. Total energy = 1150.6336 kcal/mol (1148.8184 without restraints) Performing minimization step: 4609. Total energy = 1150.5917 kcal/mol (1148.7766 without restraints) Performing minimization step: 4610. Total energy = 1150.5501 kcal/mol (1148.7352 without restraints) Performing minimization step: 4611. Total energy = 1150.5080 kcal/mol (1148.6933 without restraints) Performing minimization step: 4612. Total energy = 1150.4662 kcal/mol (1148.6515 without restraints) Performing minimization step: 4613. Total energy = 1150.4243 kcal/mol (1148.6097 without restraints) Performing minimization step: 4614. Total energy = 1150.3825 kcal/mol (1148.5679 without restraints) Performing minimization step: 4615. Total energy = 1150.3407 kcal/mol (1148.5264 without restraints) Performing minimization step: 4616. Total energy = 1150.2990 kcal/mol (1148.4847 without restraints) Performing minimization step: 4617. Total energy = 1150.2572 kcal/mol (1148.4430 without restraints) Performing minimization step: 4618. Total energy = 1150.2155 kcal/mol (1148.4015 without restraints) Performing minimization step: 4619. Total energy = 1150.1737 kcal/mol (1148.3598 without restraints) Performing minimization step: 4620. Total energy = 1150.1319 kcal/mol (1148.3181 without restraints) Performing minimization step: 4621. Total energy = 1150.0901 kcal/mol (1148.2764 without restraints) Performing minimization step: 4622. Total energy = 1150.0483 kcal/mol (1148.2347 without restraints) Performing minimization step: 4623. Total energy = 1150.0065 kcal/mol (1148.1931 without restraints) Performing minimization step: 4624. Total energy = 1149.9652 kcal/mol (1148.1518 without restraints) Performing minimization step: 4625. Total energy = 1149.9234 kcal/mol (1148.1102 without restraints) Performing minimization step: 4626. Total energy = 1149.8817 kcal/mol (1148.0686 without restraints) Performing minimization step: 4627. Total energy = 1149.8400 kcal/mol (1148.0269 without restraints) Performing minimization step: 4628. Total energy = 1149.7983 kcal/mol (1147.9853 without restraints) Performing minimization step: 4629. Total energy = 1149.7566 kcal/mol (1147.9437 without restraints) Performing minimization step: 4630. Total energy = 1149.7149 kcal/mol (1147.9022 without restraints) Performing minimization step: 4631. Total energy = 1149.6732 kcal/mol (1147.8607 without restraints) Performing minimization step: 4632. Total energy = 1149.6316 kcal/mol (1147.8191 without restraints) Performing minimization step: 4633. Total energy = 1149.5899 kcal/mol (1147.7775 without restraints) Performing minimization step: 4634. Total energy = 1149.5483 kcal/mol (1147.7360 without restraints) Performing minimization step: 4635. Total energy = 1149.5064 kcal/mol (1147.6943 without restraints) Performing minimization step: 4636. Total energy = 1149.4648 kcal/mol (1147.6527 without restraints) Performing minimization step: 4637. Total energy = 1149.4232 kcal/mol (1147.6112 without restraints) Performing minimization step: 4638. Total energy = 1149.3815 kcal/mol (1147.5698 without restraints) Performing minimization step: 4639. Total energy = 1149.3402 kcal/mol (1147.5285 without restraints) Performing minimization step: 4640. Total energy = 1149.2988 kcal/mol (1147.4872 without restraints) Performing minimization step: 4641. Total energy = 1149.2569 kcal/mol (1147.4454 without restraints) Performing minimization step: 4642. Total energy = 1149.2153 kcal/mol (1147.4040 without restraints) Performing minimization step: 4643. Total energy = 1149.1738 kcal/mol (1147.3625 without restraints) Performing minimization step: 4644. Total energy = 1149.1322 kcal/mol (1147.3211 without restraints) Performing minimization step: 4645. Total energy = 1149.0908 kcal/mol (1147.2799 without restraints) Performing minimization step: 4646. Total energy = 1149.0494 kcal/mol (1147.2385 without restraints) Performing minimization step: 4647. Total energy = 1149.0079 kcal/mol (1147.1971 without restraints) Performing minimization step: 4648. Total energy = 1148.9664 kcal/mol (1147.1557 without restraints) Performing minimization step: 4649. Total energy = 1148.9250 kcal/mol (1147.1144 without restraints) Performing minimization step: 4650. Total energy = 1148.8835 kcal/mol (1147.0731 without restraints) Performing minimization step: 4651. Total energy = 1148.8421 kcal/mol (1147.0317 without restraints) Performing minimization step: 4652. Total energy = 1148.8006 kcal/mol (1146.9904 without restraints) Performing minimization step: 4653. Total energy = 1148.7596 kcal/mol (1146.9494 without restraints) Performing minimization step: 4654. Total energy = 1148.7182 kcal/mol (1146.9081 without restraints) Performing minimization step: 4655. Total energy = 1148.6768 kcal/mol (1146.8669 without restraints) Performing minimization step: 4656. Total energy = 1148.6354 kcal/mol (1146.8256 without restraints) Performing minimization step: 4657. Total energy = 1148.5940 kcal/mol (1146.7843 without restraints) Performing minimization step: 4658. Total energy = 1148.5526 kcal/mol (1146.7431 without restraints) Performing minimization step: 4659. Total energy = 1148.5111 kcal/mol (1146.7017 without restraints) Performing minimization step: 4660. Total energy = 1148.4697 kcal/mol (1146.6603 without restraints) Performing minimization step: 4661. Total energy = 1148.4283 kcal/mol (1146.6191 without restraints) Performing minimization step: 4662. Total energy = 1148.3870 kcal/mol (1146.5778 without restraints) Performing minimization step: 4663. Total energy = 1148.3456 kcal/mol (1146.5366 without restraints) Performing minimization step: 4664. Total energy = 1148.3043 kcal/mol (1146.4953 without restraints) Performing minimization step: 4665. Total energy = 1148.2630 kcal/mol (1146.4541 without restraints) Performing minimization step: 4666. Total energy = 1148.2216 kcal/mol (1146.4129 without restraints) Performing minimization step: 4667. Total energy = 1148.1802 kcal/mol (1146.3716 without restraints) Performing minimization step: 4668. Total energy = 1148.1389 kcal/mol (1146.3304 without restraints) Performing minimization step: 4669. Total energy = 1148.0981 kcal/mol (1146.2897 without restraints) Performing minimization step: 4670. Total energy = 1148.0571 kcal/mol (1146.2488 without restraints) Performing minimization step: 4671. Total energy = 1148.0158 kcal/mol (1146.2076 without restraints) Performing minimization step: 4672. Total energy = 1147.9747 kcal/mol (1146.1667 without restraints) Performing minimization step: 4673. Total energy = 1147.9335 kcal/mol (1146.1255 without restraints) Performing minimization step: 4674. Total energy = 1147.8920 kcal/mol (1146.0842 without restraints) Performing minimization step: 4675. Total energy = 1147.8508 kcal/mol (1146.0430 without restraints) Performing minimization step: 4676. Total energy = 1147.8097 kcal/mol (1146.0022 without restraints) Performing minimization step: 4677. Total energy = 1147.7689 kcal/mol (1145.9613 without restraints) Performing minimization step: 4678. Total energy = 1147.7278 kcal/mol (1145.9205 without restraints) Performing minimization step: 4679. Total energy = 1147.6868 kcal/mol (1145.8794 without restraints) Performing minimization step: 4680. Total energy = 1147.6454 kcal/mol (1145.8382 without restraints) Performing minimization step: 4681. Total energy = 1147.6043 kcal/mol (1145.7973 without restraints) Performing minimization step: 4682. Total energy = 1147.5632 kcal/mol (1145.7561 without restraints) Performing minimization step: 4683. Total energy = 1147.5220 kcal/mol (1145.7150 without restraints) Performing minimization step: 4684. Total energy = 1147.4808 kcal/mol (1145.6741 without restraints) Performing minimization step: 4685. Total energy = 1147.4397 kcal/mol (1145.6330 without restraints) Performing minimization step: 4686. Total energy = 1147.3986 kcal/mol (1145.5920 without restraints) Performing minimization step: 4687. Total energy = 1147.3575 kcal/mol (1145.5510 without restraints) Performing minimization step: 4688. Total energy = 1147.3166 kcal/mol (1145.5102 without restraints) Performing minimization step: 4689. Total energy = 1147.2755 kcal/mol (1145.4692 without restraints) Performing minimization step: 4690. Total energy = 1147.2345 kcal/mol (1145.4283 without restraints) Performing minimization step: 4691. Total energy = 1147.1934 kcal/mol (1145.3873 without restraints) Performing minimization step: 4692. Total energy = 1147.1522 kcal/mol (1145.3462 without restraints) Performing minimization step: 4693. Total energy = 1147.1110 kcal/mol (1145.3051 without restraints) Performing minimization step: 4694. Total energy = 1147.0700 kcal/mol (1145.2642 without restraints) Performing minimization step: 4695. Total energy = 1147.0294 kcal/mol (1145.2237 without restraints) Performing minimization step: 4696. Total energy = 1146.9881 kcal/mol (1145.1825 without restraints) Performing minimization step: 4697. Total energy = 1146.9468 kcal/mol (1145.1413 without restraints) Performing minimization step: 4698. Total energy = 1146.9058 kcal/mol (1145.1004 without restraints) Performing minimization step: 4699. Total energy = 1146.8648 kcal/mol (1145.0596 without restraints) Performing minimization step: 4700. Total energy = 1146.8235 kcal/mol (1145.0183 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 1146.7825 kcal/mol (1144.9774 without restraints) Performing minimization step: 4702. Total energy = 1146.7415 kcal/mol (1144.9366 without restraints) Performing minimization step: 4703. Total energy = 1146.7006 kcal/mol (1144.8957 without restraints) Performing minimization step: 4704. Total energy = 1146.6596 kcal/mol (1144.8549 without restraints) Performing minimization step: 4705. Total energy = 1146.6187 kcal/mol (1144.8140 without restraints) Performing minimization step: 4706. Total energy = 1146.5777 kcal/mol (1144.7732 without restraints) Performing minimization step: 4707. Total energy = 1146.5371 kcal/mol (1144.7326 without restraints) Performing minimization step: 4708. Total energy = 1146.4962 kcal/mol (1144.6918 without restraints) Performing minimization step: 4709. Total energy = 1146.4552 kcal/mol (1144.6510 without restraints) Performing minimization step: 4710. Total energy = 1146.4143 kcal/mol (1144.6102 without restraints) Performing minimization step: 4711. Total energy = 1146.3734 kcal/mol (1144.5694 without restraints) Performing minimization step: 4712. Total energy = 1146.3325 kcal/mol (1144.5286 without restraints) Performing minimization step: 4713. Total energy = 1146.2917 kcal/mol (1144.4879 without restraints) Performing minimization step: 4714. Total energy = 1146.2509 kcal/mol (1144.4471 without restraints) Performing minimization step: 4715. Total energy = 1146.2100 kcal/mol (1144.4064 without restraints) Performing minimization step: 4716. Total energy = 1146.1692 kcal/mol (1144.3657 without restraints) Performing minimization step: 4717. Total energy = 1146.1285 kcal/mol (1144.3251 without restraints) Performing minimization step: 4718. Total energy = 1146.0878 kcal/mol (1144.2844 without restraints) Performing minimization step: 4719. Total energy = 1146.0470 kcal/mol (1144.2438 without restraints) Performing minimization step: 4720. Total energy = 1146.0062 kcal/mol (1144.2031 without restraints) Performing minimization step: 4721. Total energy = 1145.9655 kcal/mol (1144.1624 without restraints) Performing minimization step: 4722. Total energy = 1145.9251 kcal/mol (1144.1222 without restraints) Performing minimization step: 4723. Total energy = 1145.8844 kcal/mol (1144.0816 without restraints) Performing minimization step: 4724. Total energy = 1145.8436 kcal/mol (1144.0409 without restraints) Performing minimization step: 4725. Total energy = 1145.8029 kcal/mol (1144.0003 without restraints) Performing minimization step: 4726. Total energy = 1145.7623 kcal/mol (1143.9598 without restraints) Performing minimization step: 4727. Total energy = 1145.7216 kcal/mol (1143.9192 without restraints) Performing minimization step: 4728. Total energy = 1145.6809 kcal/mol (1143.8786 without restraints) Performing minimization step: 4729. Total energy = 1145.6402 kcal/mol (1143.8380 without restraints) Performing minimization step: 4730. Total energy = 1145.5994 kcal/mol (1143.7972 without restraints) Performing minimization step: 4731. Total energy = 1145.5584 kcal/mol (1143.7562 without restraints) Performing minimization step: 4732. Total energy = 1145.5176 kcal/mol (1143.7157 without restraints) Performing minimization step: 4733. Total energy = 1145.4769 kcal/mol (1143.6751 without restraints) Performing minimization step: 4734. Total energy = 1145.4364 kcal/mol (1143.6346 without restraints) Performing minimization step: 4735. Total energy = 1145.3957 kcal/mol (1143.5940 without restraints) Performing minimization step: 4736. Total energy = 1145.3550 kcal/mol (1143.5535 without restraints) Performing minimization step: 4737. Total energy = 1145.3144 kcal/mol (1143.5130 without restraints) Performing minimization step: 4738. Total energy = 1145.2736 kcal/mol (1143.4723 without restraints) Performing minimization step: 4739. Total energy = 1145.2330 kcal/mol (1143.4318 without restraints) Performing minimization step: 4740. Total energy = 1145.1927 kcal/mol (1143.3917 without restraints) Performing minimization step: 4741. Total energy = 1145.1522 kcal/mol (1143.3512 without restraints) Performing minimization step: 4742. Total energy = 1145.1116 kcal/mol (1143.3107 without restraints) Performing minimization step: 4743. Total energy = 1145.0708 kcal/mol (1143.2700 without restraints) Performing minimization step: 4744. Total energy = 1145.0301 kcal/mol (1143.2293 without restraints) Performing minimization step: 4745. Total energy = 1144.9897 kcal/mol (1143.1891 without restraints) Performing minimization step: 4746. Total energy = 1144.9492 kcal/mol (1143.1486 without restraints) Performing minimization step: 4747. Total energy = 1144.9087 kcal/mol (1143.1082 without restraints) Performing minimization step: 4748. Total energy = 1144.8683 kcal/mol (1143.0680 without restraints) Performing minimization step: 4749. Total energy = 1144.8279 kcal/mol (1143.0276 without restraints) Performing minimization step: 4750. Total energy = 1144.7874 kcal/mol (1142.9872 without restraints) Performing minimization step: 4751. Total energy = 1144.7469 kcal/mol (1142.9468 without restraints) Performing minimization step: 4752. Total energy = 1144.7064 kcal/mol (1142.9064 without restraints) Performing minimization step: 4753. Total energy = 1144.6659 kcal/mol (1142.8660 without restraints) Performing minimization step: 4754. Total energy = 1144.6252 kcal/mol (1142.8255 without restraints) Performing minimization step: 4755. Total energy = 1144.5849 kcal/mol (1142.7853 without restraints) Performing minimization step: 4756. Total energy = 1144.5445 kcal/mol (1142.7450 without restraints) Performing minimization step: 4757. Total energy = 1144.5042 kcal/mol (1142.7047 without restraints) Performing minimization step: 4758. Total energy = 1144.4639 kcal/mol (1142.6645 without restraints) Performing minimization step: 4759. Total energy = 1144.4235 kcal/mol (1142.6242 without restraints) Performing minimization step: 4760. Total energy = 1144.3830 kcal/mol (1142.5839 without restraints) Performing minimization step: 4761. Total energy = 1144.3426 kcal/mol (1142.5435 without restraints) Performing minimization step: 4762. Total energy = 1144.3022 kcal/mol (1142.5032 without restraints) Performing minimization step: 4763. Total energy = 1144.2618 kcal/mol (1142.4628 without restraints) Performing minimization step: 4764. Total energy = 1144.2213 kcal/mol (1142.4225 without restraints) Performing minimization step: 4765. Total energy = 1144.1809 kcal/mol (1142.3822 without restraints) Performing minimization step: 4766. Total energy = 1144.1406 kcal/mol (1142.3420 without restraints) Performing minimization step: 4767. Total energy = 1144.1003 kcal/mol (1142.3017 without restraints) Performing minimization step: 4768. Total energy = 1144.0604 kcal/mol (1142.2619 without restraints) Performing minimization step: 4769. Total energy = 1144.0203 kcal/mol (1142.2219 without restraints) Performing minimization step: 4770. Total energy = 1143.9799 kcal/mol (1142.1817 without restraints) Performing minimization step: 4771. Total energy = 1143.9398 kcal/mol (1142.1417 without restraints) Performing minimization step: 4772. Total energy = 1143.8993 kcal/mol (1142.1012 without restraints) Performing minimization step: 4773. Total energy = 1143.8590 kcal/mol (1142.0611 without restraints) Performing minimization step: 4774. Total energy = 1143.8187 kcal/mol (1142.0209 without restraints) Performing minimization step: 4775. Total energy = 1143.7785 kcal/mol (1141.9807 without restraints) Performing minimization step: 4776. Total energy = 1143.7382 kcal/mol (1141.9405 without restraints) Performing minimization step: 4777. Total energy = 1143.6980 kcal/mol (1141.9004 without restraints) Performing minimization step: 4778. Total energy = 1143.6577 kcal/mol (1141.8602 without restraints) Performing minimization step: 4779. Total energy = 1143.6176 kcal/mol (1141.8203 without restraints) Performing minimization step: 4780. Total energy = 1143.5774 kcal/mol (1141.7801 without restraints) Performing minimization step: 4781. Total energy = 1143.5369 kcal/mol (1141.7397 without restraints) Performing minimization step: 4782. Total energy = 1143.4967 kcal/mol (1141.6996 without restraints) Performing minimization step: 4783. Total energy = 1143.4564 kcal/mol (1141.6593 without restraints) Performing minimization step: 4784. Total energy = 1143.4159 kcal/mol (1141.6190 without restraints) Performing minimization step: 4785. Total energy = 1143.3759 kcal/mol (1141.5791 without restraints) Performing minimization step: 4786. Total energy = 1143.3358 kcal/mol (1141.5390 without restraints) Performing minimization step: 4787. Total energy = 1143.2956 kcal/mol (1141.4989 without restraints) Performing minimization step: 4788. Total energy = 1143.2552 kcal/mol (1141.4585 without restraints) Performing minimization step: 4789. Total energy = 1143.2150 kcal/mol (1141.4185 without restraints) Performing minimization step: 4790. Total energy = 1143.1745 kcal/mol (1141.3782 without restraints) Performing minimization step: 4791. Total energy = 1143.1344 kcal/mol (1141.3381 without restraints) Performing minimization step: 4792. Total energy = 1143.0943 kcal/mol (1141.2981 without restraints) Performing minimization step: 4793. Total energy = 1143.0548 kcal/mol (1141.2588 without restraints) Performing minimization step: 4794. Total energy = 1143.0148 kcal/mol (1141.2188 without restraints) Performing minimization step: 4795. Total energy = 1142.9747 kcal/mol (1141.1788 without restraints) Performing minimization step: 4796. Total energy = 1142.9349 kcal/mol (1141.1391 without restraints) Performing minimization step: 4797. Total energy = 1142.8948 kcal/mol (1141.0991 without restraints) Performing minimization step: 4798. Total energy = 1142.8548 kcal/mol (1141.0591 without restraints) Performing minimization step: 4799. Total energy = 1142.8147 kcal/mol (1141.0192 without restraints) Performing minimization step: 4800. Total energy = 1142.7744 kcal/mol (1140.9790 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 1142.7344 kcal/mol (1140.9390 without restraints) Performing minimization step: 4802. Total energy = 1142.6942 kcal/mol (1140.8987 without restraints) Performing minimization step: 4803. Total energy = 1142.6540 kcal/mol (1140.8588 without restraints) Performing minimization step: 4804. Total energy = 1142.6139 kcal/mol (1140.8187 without restraints) Performing minimization step: 4805. Total energy = 1142.5738 kcal/mol (1140.7788 without restraints) Performing minimization step: 4806. Total energy = 1142.5334 kcal/mol (1140.7385 without restraints) Performing minimization step: 4807. Total energy = 1142.4935 kcal/mol (1140.6987 without restraints) Performing minimization step: 4808. Total energy = 1142.4535 kcal/mol (1140.6588 without restraints) Performing minimization step: 4809. Total energy = 1142.4136 kcal/mol (1140.6190 without restraints) Performing minimization step: 4810. Total energy = 1142.3735 kcal/mol (1140.5789 without restraints) Performing minimization step: 4811. Total energy = 1142.3336 kcal/mol (1140.5391 without restraints) Performing minimization step: 4812. Total energy = 1142.2936 kcal/mol (1140.4993 without restraints) Performing minimization step: 4813. Total energy = 1142.2539 kcal/mol (1140.4596 without restraints) Performing minimization step: 4814. Total energy = 1142.2137 kcal/mol (1140.4195 without restraints) Performing minimization step: 4815. Total energy = 1142.1738 kcal/mol (1140.3797 without restraints) Performing minimization step: 4816. Total energy = 1142.1339 kcal/mol (1140.3399 without restraints) Performing minimization step: 4817. Total energy = 1142.0941 kcal/mol (1140.3001 without restraints) Performing minimization step: 4818. Total energy = 1142.0545 kcal/mol (1140.2607 without restraints) Performing minimization step: 4819. Total energy = 1142.0146 kcal/mol (1140.2209 without restraints) Performing minimization step: 4820. Total energy = 1141.9748 kcal/mol (1140.1811 without restraints) Performing minimization step: 4821. Total energy = 1141.9349 kcal/mol (1140.1414 without restraints) Performing minimization step: 4822. Total energy = 1141.8951 kcal/mol (1140.1016 without restraints) Performing minimization step: 4823. Total energy = 1141.8553 kcal/mol (1140.0619 without restraints) Performing minimization step: 4824. Total energy = 1141.8155 kcal/mol (1140.0222 without restraints) Performing minimization step: 4825. Total energy = 1141.7756 kcal/mol (1139.9824 without restraints) Performing minimization step: 4826. Total energy = 1141.7358 kcal/mol (1139.9427 without restraints) Performing minimization step: 4827. Total energy = 1141.6961 kcal/mol (1139.9030 without restraints) Performing minimization step: 4828. Total energy = 1141.6563 kcal/mol (1139.8633 without restraints) Performing minimization step: 4829. Total energy = 1141.6165 kcal/mol (1139.8237 without restraints) Performing minimization step: 4830. Total energy = 1141.5766 kcal/mol (1139.7838 without restraints) Performing minimization step: 4831. Total energy = 1141.5371 kcal/mol (1139.7444 without restraints) Performing minimization step: 4832. Total energy = 1141.4973 kcal/mol (1139.7048 without restraints) Performing minimization step: 4833. Total energy = 1141.4577 kcal/mol (1139.6652 without restraints) Performing minimization step: 4834. Total energy = 1141.4180 kcal/mol (1139.6256 without restraints) Performing minimization step: 4835. Total energy = 1141.3783 kcal/mol (1139.5859 without restraints) Performing minimization step: 4836. Total energy = 1141.3386 kcal/mol (1139.5464 without restraints) Performing minimization step: 4837. Total energy = 1141.2988 kcal/mol (1139.5066 without restraints) Performing minimization step: 4838. Total energy = 1141.2591 kcal/mol (1139.4670 without restraints) Performing minimization step: 4839. Total energy = 1141.2194 kcal/mol (1139.4274 without restraints) Performing minimization step: 4840. Total energy = 1141.1798 kcal/mol (1139.3879 without restraints) Performing minimization step: 4841. Total energy = 1141.1402 kcal/mol (1139.3484 without restraints) Performing minimization step: 4842. Total energy = 1141.1005 kcal/mol (1139.3088 without restraints) Performing minimization step: 4843. Total energy = 1141.0609 kcal/mol (1139.2692 without restraints) Performing minimization step: 4844. Total energy = 1141.0213 kcal/mol (1139.2297 without restraints) Performing minimization step: 4845. Total energy = 1140.9817 kcal/mol (1139.1902 without restraints) Performing minimization step: 4846. Total energy = 1140.9420 kcal/mol (1139.1505 without restraints) Performing minimization step: 4847. Total energy = 1140.9023 kcal/mol (1139.1110 without restraints) Performing minimization step: 4848. Total energy = 1140.8627 kcal/mol (1139.0715 without restraints) Performing minimization step: 4849. Total energy = 1140.8231 kcal/mol (1139.0320 without restraints) Performing minimization step: 4850. Total energy = 1140.7831 kcal/mol (1138.9921 without restraints) Performing minimization step: 4851. Total energy = 1140.7434 kcal/mol (1138.9524 without restraints) Performing minimization step: 4852. Total energy = 1140.7039 kcal/mol (1138.9130 without restraints) Performing minimization step: 4853. Total energy = 1140.6643 kcal/mol (1138.8736 without restraints) Performing minimization step: 4854. Total energy = 1140.6248 kcal/mol (1138.8341 without restraints) Performing minimization step: 4855. Total energy = 1140.5853 kcal/mol (1138.7947 without restraints) Performing minimization step: 4856. Total energy = 1140.5458 kcal/mol (1138.7553 without restraints) Performing minimization step: 4857. Total energy = 1140.5064 kcal/mol (1138.7159 without restraints) Performing minimization step: 4858. Total energy = 1140.4668 kcal/mol (1138.6763 without restraints) Performing minimization step: 4859. Total energy = 1140.4272 kcal/mol (1138.6370 without restraints) Performing minimization step: 4860. Total energy = 1140.3879 kcal/mol (1138.5978 without restraints) Performing minimization step: 4861. Total energy = 1140.3485 kcal/mol (1138.5584 without restraints) Performing minimization step: 4862. Total energy = 1140.3093 kcal/mol (1138.5193 without restraints) Performing minimization step: 4863. Total energy = 1140.2699 kcal/mol (1138.4799 without restraints) Performing minimization step: 4864. Total energy = 1140.2305 kcal/mol (1138.4406 without restraints) Performing minimization step: 4865. Total energy = 1140.1910 kcal/mol (1138.4012 without restraints) Performing minimization step: 4866. Total energy = 1140.1514 kcal/mol (1138.3617 without restraints) Performing minimization step: 4867. Total energy = 1140.1120 kcal/mol (1138.3224 without restraints) Performing minimization step: 4868. Total energy = 1140.0726 kcal/mol (1138.2831 without restraints) Performing minimization step: 4869. Total energy = 1140.0333 kcal/mol (1138.2439 without restraints) Performing minimization step: 4870. Total energy = 1139.9940 kcal/mol (1138.2046 without restraints) Performing minimization step: 4871. Total energy = 1139.9546 kcal/mol (1138.1653 without restraints) Performing minimization step: 4872. Total energy = 1139.9153 kcal/mol (1138.1261 without restraints) Performing minimization step: 4873. Total energy = 1139.8755 kcal/mol (1138.0864 without restraints) Performing minimization step: 4874. Total energy = 1139.8362 kcal/mol (1138.0472 without restraints) Performing minimization step: 4875. Total energy = 1139.7969 kcal/mol (1138.0079 without restraints) Performing minimization step: 4876. Total energy = 1139.7574 kcal/mol (1137.9685 without restraints) Performing minimization step: 4877. Total energy = 1139.7181 kcal/mol (1137.9293 without restraints) Performing minimization step: 4878. Total energy = 1139.6788 kcal/mol (1137.8901 without restraints) Performing minimization step: 4879. Total energy = 1139.6395 kcal/mol (1137.8509 without restraints) Performing minimization step: 4880. Total energy = 1139.6004 kcal/mol (1137.8119 without restraints) Performing minimization step: 4881. Total energy = 1139.5612 kcal/mol (1137.7728 without restraints) Performing minimization step: 4882. Total energy = 1139.5222 kcal/mol (1137.7338 without restraints) Performing minimization step: 4883. Total energy = 1139.4828 kcal/mol (1137.6945 without restraints) Performing minimization step: 4884. Total energy = 1139.4435 kcal/mol (1137.6554 without restraints) Performing minimization step: 4885. Total energy = 1139.4043 kcal/mol (1137.6162 without restraints) Performing minimization step: 4886. Total energy = 1139.3651 kcal/mol (1137.5771 without restraints) Performing minimization step: 4887. Total energy = 1139.3260 kcal/mol (1137.5380 without restraints) Performing minimization step: 4888. Total energy = 1139.2868 kcal/mol (1137.4989 without restraints) Performing minimization step: 4889. Total energy = 1139.2476 kcal/mol (1137.4598 without restraints) Performing minimization step: 4890. Total energy = 1139.2089 kcal/mol (1137.4212 without restraints) Performing minimization step: 4891. Total energy = 1139.1697 kcal/mol (1137.3821 without restraints) Performing minimization step: 4892. Total energy = 1139.1306 kcal/mol (1137.3429 without restraints) Performing minimization step: 4893. Total energy = 1139.0914 kcal/mol (1137.3040 without restraints) Performing minimization step: 4894. Total energy = 1139.0523 kcal/mol (1137.2650 without restraints) Performing minimization step: 4895. Total energy = 1139.0134 kcal/mol (1137.2261 without restraints) Performing minimization step: 4896. Total energy = 1138.9743 kcal/mol (1137.1871 without restraints) Performing minimization step: 4897. Total energy = 1138.9352 kcal/mol (1137.1481 without restraints) Performing minimization step: 4898. Total energy = 1138.8961 kcal/mol (1137.1091 without restraints) Performing minimization step: 4899. Total energy = 1138.8571 kcal/mol (1137.0701 without restraints) Performing minimization step: 4900. Total energy = 1138.8180 kcal/mol (1137.0311 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 1138.7792 kcal/mol (1136.9924 without restraints) Performing minimization step: 4902. Total energy = 1138.7401 kcal/mol (1136.9534 without restraints) Performing minimization step: 4903. Total energy = 1138.7010 kcal/mol (1136.9144 without restraints) Performing minimization step: 4904. Total energy = 1138.6620 kcal/mol (1136.8755 without restraints) Performing minimization step: 4905. Total energy = 1138.6230 kcal/mol (1136.8365 without restraints) Performing minimization step: 4906. Total energy = 1138.5840 kcal/mol (1136.7976 without restraints) Performing minimization step: 4907. Total energy = 1138.5446 kcal/mol (1136.7583 without restraints) Performing minimization step: 4908. Total energy = 1138.5057 kcal/mol (1136.7194 without restraints) Performing minimization step: 4909. Total energy = 1138.4665 kcal/mol (1136.6802 without restraints) Performing minimization step: 4910. Total energy = 1138.4275 kcal/mol (1136.6414 without restraints) Performing minimization step: 4911. Total energy = 1138.3885 kcal/mol (1136.6025 without restraints) Performing minimization step: 4912. Total energy = 1138.3498 kcal/mol (1136.5638 without restraints) Performing minimization step: 4913. Total energy = 1138.3109 kcal/mol (1136.5251 without restraints) Performing minimization step: 4914. Total energy = 1138.2720 kcal/mol (1136.4862 without restraints) Performing minimization step: 4915. Total energy = 1138.2329 kcal/mol (1136.4473 without restraints) Performing minimization step: 4916. Total energy = 1138.1943 kcal/mol (1136.4087 without restraints) Performing minimization step: 4917. Total energy = 1138.1554 kcal/mol (1136.3699 without restraints) Performing minimization step: 4918. Total energy = 1138.1165 kcal/mol (1136.3311 without restraints) Performing minimization step: 4919. Total energy = 1138.0777 kcal/mol (1136.2923 without restraints) Performing minimization step: 4920. Total energy = 1138.0389 kcal/mol (1136.2536 without restraints) Performing minimization step: 4921. Total energy = 1138.0000 kcal/mol (1136.2149 without restraints) Performing minimization step: 4922. Total energy = 1137.9613 kcal/mol (1136.1762 without restraints) Performing minimization step: 4923. Total energy = 1137.9226 kcal/mol (1136.1376 without restraints) Performing minimization step: 4924. Total energy = 1137.8841 kcal/mol (1136.0991 without restraints) Performing minimization step: 4925. Total energy = 1137.8453 kcal/mol (1136.0604 without restraints) Performing minimization step: 4926. Total energy = 1137.8062 kcal/mol (1136.0213 without restraints) Performing minimization step: 4927. Total energy = 1137.7676 kcal/mol (1135.9828 without restraints) Performing minimization step: 4928. Total energy = 1137.7287 kcal/mol (1135.9441 without restraints) Performing minimization step: 4929. Total energy = 1137.6900 kcal/mol (1135.9055 without restraints) Performing minimization step: 4930. Total energy = 1137.6513 kcal/mol (1135.8668 without restraints) Performing minimization step: 4931. Total energy = 1137.6125 kcal/mol (1135.8281 without restraints) Performing minimization step: 4932. Total energy = 1137.5738 kcal/mol (1135.7895 without restraints) Performing minimization step: 4933. Total energy = 1137.5352 kcal/mol (1135.7509 without restraints) Performing minimization step: 4934. Total energy = 1137.4965 kcal/mol (1135.7123 without restraints) Performing minimization step: 4935. Total energy = 1137.4579 kcal/mol (1135.6738 without restraints) Performing minimization step: 4936. Total energy = 1137.4194 kcal/mol (1135.6354 without restraints) Performing minimization step: 4937. Total energy = 1137.3811 kcal/mol (1135.5972 without restraints) Performing minimization step: 4938. Total energy = 1137.3423 kcal/mol (1135.5584 without restraints) Performing minimization step: 4939. Total energy = 1137.3038 kcal/mol (1135.5203 without restraints) Performing minimization step: 4940. Total energy = 1137.2654 kcal/mol (1135.4816 without restraints) Performing minimization step: 4941. Total energy = 1137.2267 kcal/mol (1135.4431 without restraints) Performing minimization step: 4942. Total energy = 1137.1881 kcal/mol (1135.4046 without restraints) Performing minimization step: 4943. Total energy = 1137.1496 kcal/mol (1135.3661 without restraints) Performing minimization step: 4944. Total energy = 1137.1109 kcal/mol (1135.3275 without restraints) Performing minimization step: 4945. Total energy = 1137.0725 kcal/mol (1135.2892 without restraints) Performing minimization step: 4946. Total energy = 1137.0340 kcal/mol (1135.2507 without restraints) Performing minimization step: 4947. Total energy = 1136.9954 kcal/mol (1135.2123 without restraints) Performing minimization step: 4948. Total energy = 1136.9569 kcal/mol (1135.1738 without restraints) Performing minimization step: 4949. Total energy = 1136.9184 kcal/mol (1135.1354 without restraints) Performing minimization step: 4950. Total energy = 1136.8795 kcal/mol (1135.0965 without restraints) Performing minimization step: 4951. Total energy = 1136.8408 kcal/mol (1135.0579 without restraints) Performing minimization step: 4952. Total energy = 1136.8023 kcal/mol (1135.0195 without restraints) Performing minimization step: 4953. Total energy = 1136.7638 kcal/mol (1134.9809 without restraints) Performing minimization step: 4954. Total energy = 1136.7252 kcal/mol (1134.9426 without restraints) Performing minimization step: 4955. Total energy = 1136.6867 kcal/mol (1134.9042 without restraints) Performing minimization step: 4956. Total energy = 1136.6483 kcal/mol (1134.8659 without restraints) Performing minimization step: 4957. Total energy = 1136.6102 kcal/mol (1134.8278 without restraints) Performing minimization step: 4958. Total energy = 1136.5718 kcal/mol (1134.7894 without restraints) Performing minimization step: 4959. Total energy = 1136.5334 kcal/mol (1134.7511 without restraints) Performing minimization step: 4960. Total energy = 1136.4946 kcal/mol (1134.7124 without restraints) Performing minimization step: 4961. Total energy = 1136.4562 kcal/mol (1134.6741 without restraints) Performing minimization step: 4962. Total energy = 1136.4178 kcal/mol (1134.6358 without restraints) Performing minimization step: 4963. Total energy = 1136.3794 kcal/mol (1134.5975 without restraints) Performing minimization step: 4964. Total energy = 1136.3412 kcal/mol (1134.5594 without restraints) Performing minimization step: 4965. Total energy = 1136.3030 kcal/mol (1134.5212 without restraints) Performing minimization step: 4966. Total energy = 1136.2648 kcal/mol (1134.4831 without restraints) Performing minimization step: 4967. Total energy = 1136.2265 kcal/mol (1134.4449 without restraints) Performing minimization step: 4968. Total energy = 1136.1885 kcal/mol (1134.4071 without restraints) Performing minimization step: 4969. Total energy = 1136.1505 kcal/mol (1134.3691 without restraints) Performing minimization step: 4970. Total energy = 1136.1122 kcal/mol (1134.3308 without restraints) Performing minimization step: 4971. Total energy = 1136.0741 kcal/mol (1134.2929 without restraints) Performing minimization step: 4972. Total energy = 1136.0359 kcal/mol (1134.2547 without restraints) Performing minimization step: 4973. Total energy = 1135.9977 kcal/mol (1134.2165 without restraints) Performing minimization step: 4974. Total energy = 1135.9594 kcal/mol (1134.1783 without restraints) Performing minimization step: 4975. Total energy = 1135.9214 kcal/mol (1134.1406 without restraints) Performing minimization step: 4976. Total energy = 1135.8834 kcal/mol (1134.1025 without restraints) Performing minimization step: 4977. Total energy = 1135.8453 kcal/mol (1134.0644 without restraints) Performing minimization step: 4978. Total energy = 1135.8073 kcal/mol (1134.0265 without restraints) Performing minimization step: 4979. Total energy = 1135.7691 kcal/mol (1133.9884 without restraints) Performing minimization step: 4980. Total energy = 1135.7312 kcal/mol (1133.9505 without restraints) Performing minimization step: 4981. Total energy = 1135.6934 kcal/mol (1133.9129 without restraints) Performing minimization step: 4982. Total energy = 1135.6553 kcal/mol (1133.8748 without restraints) Performing minimization step: 4983. Total energy = 1135.6174 kcal/mol (1133.8370 without restraints) Performing minimization step: 4984. Total energy = 1135.5793 kcal/mol (1133.7990 without restraints) Performing minimization step: 4985. Total energy = 1135.5413 kcal/mol (1133.7611 without restraints) Performing minimization step: 4986. Total energy = 1135.5035 kcal/mol (1133.7233 without restraints) Performing minimization step: 4987. Total energy = 1135.4653 kcal/mol (1133.6851 without restraints) Performing minimization step: 4988. Total energy = 1135.4272 kcal/mol (1133.6471 without restraints) Performing minimization step: 4989. Total energy = 1135.3892 kcal/mol (1133.6094 without restraints) Performing minimization step: 4990. Total energy = 1135.3512 kcal/mol (1133.5712 without restraints) Performing minimization step: 4991. Total energy = 1135.3131 kcal/mol (1133.5332 without restraints) Performing minimization step: 4992. Total energy = 1135.2750 kcal/mol (1133.4953 without restraints) Performing minimization step: 4993. Total energy = 1135.2370 kcal/mol (1133.4573 without restraints) Performing minimization step: 4994. Total energy = 1135.1990 kcal/mol (1133.4194 without restraints) Performing minimization step: 4995. Total energy = 1135.1610 kcal/mol (1133.3814 without restraints) Performing minimization step: 4996. Total energy = 1135.1233 kcal/mol (1133.3440 without restraints) Performing minimization step: 4997. Total energy = 1135.0855 kcal/mol (1133.3061 without restraints) Performing minimization step: 4998. Total energy = 1135.0475 kcal/mol (1133.2682 without restraints) Performing minimization step: 4999. Total energy = 1135.0096 kcal/mol (1133.2303 without restraints) Performing minimization step: 5000. Total energy = 1134.9714 kcal/mol (1133.1923 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b2a8ed87/tmp/model1_refx/model1_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to model1_refx.pdb DONE!