============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev.pdb ============================================================================= Error: recognition of atom ATOM 1 HO5' DA 1 ... failed. Atom erased. Error: recognition of atom ATOM 29 H2'' DA 1 ... failed. Atom erased. Error: recognition of atom ATOM 59 H2'' DC 2 ... failed. Atom erased. Error: recognition of atom ATOM 91 H2'' DT 3 ... failed. Atom erased. Error: recognition of atom ATOM 121 H2'' DC 4 ... failed. Atom erased. Error: recognition of atom ATOM 153 H2'' DA 5 ... failed. Atom erased. Error: recognition of atom ATOM 185 H2'' DT 6 ... failed. Atom erased. Error: recognition of atom ATOM 217 H2'' DA 7 ... failed. Atom erased. Error: recognition of atom ATOM 247 H2'' DC 8 ... failed. Atom erased. Error: recognition of atom ATOM 279 H2'' DA 9 ... failed. Atom erased. Error: recognition of atom ATOM 309 H2'' DC 10 ... failed. Atom erased. Error: recognition of atom ATOM 342 H2'' DG 11 ... failed. Atom erased. Error: recognition of atom ATOM 374 H2'' DA 12 ... failed. Atom erased. Error: recognition of atom ATOM 407 H2'' DG 13 ... failed. Atom erased. Error: recognition of atom ATOM 440 H2'' DG 14 ... failed. Atom erased. Error: recognition of atom ATOM 472 H2'' DT 15 ... failed. Atom erased. Error: recognition of atom ATOM 504 H2'' DA 16 ... failed. Atom erased. Error: recognition of atom ATOM 537 H2'' DG 17 ... failed. Atom erased. Error: recognition of atom ATOM 569 H2'' DT 18 ... failed. Atom erased. Error: recognition of atom ATOM 602 H2'' DG 19 ... failed. Atom erased. Error: recognition of atom ATOM 634 H2'' DA 20 ... failed. Atom erased. Error: recognition of atom ATOM 666 H2'' DA 21 ... failed. Atom erased. Error: recognition of atom ATOM 698 H2'' DA 22 ... failed. Atom erased. Error: recognition of atom ATOM 730 H2'' DA 23 ... failed. Atom erased. Error: recognition of atom ATOM 762 H2'' DA 24 ... failed. Atom erased. Error: recognition of atom ATOM 794 H2'' DA 25 ... failed. Atom erased. Error: recognition of atom ATOM 827 H2'' DG 26 ... failed. Atom erased. Error: recognition of atom ATOM 857 H2'' DC 27 ... failed. Atom erased. Error: recognition of atom ATOM 887 H2'' DC 28 ... failed. Atom erased. Error: recognition of atom ATOM 917 H2'' DC 29 ... failed. Atom erased. Error: recognition of atom ATOM 949 H2'' DA 30 ... failed. Atom erased. Error: recognition of atom ATOM 979 H2'' DC 31 ... failed. Atom erased. Error: recognition of atom ATOM 1009 H2'' DC 32 ... failed. Atom erased. Error: recognition of atom ATOM 1042 H2'' DG 33 ... failed. Atom erased. Error: recognition of atom ATOM 1074 H2'' DT 34 ... failed. Atom erased. Error: recognition of atom ATOM 1106 H2'' DA 35 ... failed. Atom erased. Error: recognition of atom ATOM 1139 H2'' DG 36 ... failed. Atom erased. Error: recognition of atom ATOM 1171 H2'' DA 37 ... failed. Atom erased. Error: recognition of atom ATOM 1201 H2'' DC 38 ... failed. Atom erased. Error: recognition of atom ATOM 1231 H2'' DC 39 ... failed. Atom erased. Error: recognition of atom ATOM 1264 H2'' DG 40 ... failed. Atom erased. Error: recognition of atom ATOM 1266 HO3' DG 40 ... failed. Atom erased. Missing atom added: HETATM 1 P DA 1 1.616 -20.679 -29.953 1.00 0.00 P Missing atom added: HETATM 11 H2'2 DA 1 -2.075 -25.882 -27.796 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC 2 -3.855 -25.925 -21.202 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT 3 -3.592 -21.819 -15.425 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC 4 -0.604 -22.736 -10.877 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA 5 3.345 -21.836 -8.409 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT 6 8.599 -18.891 -6.484 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA 7 13.276 -17.530 -9.019 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC 8 14.727 -12.371 -10.286 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA 9 14.425 -7.157 -12.096 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC 10 11.814 -2.878 -14.415 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG 11 8.562 1.772 -12.321 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA 12 4.664 4.539 -9.957 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG 13 1.332 4.916 -5.668 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG 14 0.847 5.363 0.208 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT 15 3.014 7.232 5.867 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA 16 7.123 8.526 8.629 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG 17 12.547 11.775 10.175 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT 18 16.159 17.429 8.451 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG 19 17.725 21.508 5.865 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA 20 12.911 25.938 7.595 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA 21 7.180 28.740 7.647 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA 22 8.384 26.583 0.577 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA 23 8.431 20.707 -2.030 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA 24 12.164 17.880 -2.831 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA 25 17.092 14.766 -0.144 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG 26 17.351 9.959 3.239 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC 27 14.139 5.246 5.221 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC 28 10.026 0.862 5.005 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC 29 6.276 -2.393 2.002 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA 30 1.628 -3.026 -0.898 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC 31 -0.028 -2.715 -6.849 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC 32 2.238 -5.292 -12.277 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG 33 6.903 -6.659 -15.817 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT 34 10.406 -13.415 -17.007 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA 35 12.242 -18.092 -16.105 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG 36 10.180 -23.322 -14.410 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA 37 6.350 -27.541 -13.181 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC 38 1.980 -30.854 -15.954 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC 39 -2.910 -32.252 -19.176 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG 40 -4.253 -31.983 -25.241 1.00 0.00 H Number of atoms: 1265 Number of residues: 40 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. 1 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. 1 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. 1 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. 1 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. 1 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. 1 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. 1 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 1368 Number of angles built: 2476 Number of dihedrals built: 3699 Number of impropers built: 273 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 795636 Number of van der Waals pairs: 144003 Number of H-bonds built: 29 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 5 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 1077312.0961 kcal/mol (1073306.1413 without restraints) Performing minimization step: 2. Total energy = 1044078.4420 kcal/mol (1040223.3297 without restraints) Performing minimization step: 3. Total energy = 1012090.9755 kcal/mol (1008379.2622 without restraints) Performing minimization step: 4. Total energy = 981288.9147 kcal/mol (977713.6904 without restraints) Performing minimization step: 5. Total energy = 951615.7635 kcal/mol (948170.5970 without restraints) Performing minimization step: 6. Total energy = 923018.8837 kcal/mol (919697.7760 without restraints) Performing minimization step: 7. Total energy = 895449.1200 kcal/mol (892246.4628 without restraints) Performing minimization step: 8. Total energy = 868860.4714 kcal/mol (865771.0106 without restraints) Performing minimization step: 9. Total energy = 843209.8005 kcal/mol (840228.6042 without restraints) Performing minimization step: 10. Total energy = 818456.5781 kcal/mol (815579.0080 without restraints) Performing minimization step: 11. Total energy = 794562.6566 kcal/mol (791784.3435 without restraints) Performing minimization step: 12. Total energy = 771492.0696 kcal/mol (768808.8902 without restraints) Performing minimization step: 13. Total energy = 749210.8531 kcal/mol (746618.9110 without restraints) Performing minimization step: 14. Total energy = 727686.8868 kcal/mol (725182.4942 without restraints) Performing minimization step: 15. Total energy = 706889.7517 kcal/mol (704469.4140 without restraints) Performing minimization step: 16. Total energy = 686790.6028 kcal/mol (684451.0040 without restraints) Performing minimization step: 17. Total energy = 667362.0549 kcal/mol (665100.0449 without restraints) Performing minimization step: 18. Total energy = 648578.0791 kcal/mol (646390.6623 without restraints) Performing minimization step: 19. Total energy = 630413.9096 kcal/mol (628298.2342 without restraints) Performing minimization step: 20. Total energy = 612845.9595 kcal/mol (610799.3081 without restraints) Performing minimization step: 21. Total energy = 595851.7448 kcal/mol (593871.5260 without restraints) Performing minimization step: 22. Total energy = 579409.8133 kcal/mol (577493.5537 without restraints) Performing minimization step: 23. Total energy = 563499.6820 kcal/mol (561645.0189 without restraints) Performing minimization step: 24. Total energy = 548101.7784 kcal/mol (546306.4531 without restraints) Performing minimization step: 25. Total energy = 533197.3864 kcal/mol (531459.2388 without restraints) Performing minimization step: 26. Total energy = 518768.5989 kcal/mol (517085.5611 without restraints) Performing minimization step: 27. Total energy = 504798.2709 kcal/mol (503168.3629 without restraints) Performing minimization step: 28. Total energy = 491269.9787 kcal/mol (489691.3029 without restraints) Performing minimization step: 29. Total energy = 478167.9806 kcal/mol (476638.7178 without restraints) Performing minimization step: 30. Total energy = 465477.1812 kcal/mol (463995.5866 without restraints) Performing minimization step: 31. Total energy = 453183.0985 kcal/mol (451747.4977 without restraints) Performing minimization step: 32. Total energy = 441271.8324 kcal/mol (439880.6180 without restraints) Performing minimization step: 33. Total energy = 429730.0360 kcal/mol (428381.6643 without restraints) Performing minimization step: 34. Total energy = 418544.8890 kcal/mol (417237.8768 without restraints) Performing minimization step: 35. Total energy = 407704.0714 kcal/mol (406436.9932 without restraints) Performing minimization step: 36. Total energy = 397195.7412 kcal/mol (395967.2266 without restraints) Performing minimization step: 37. Total energy = 387008.5112 kcal/mol (385817.2422 without restraints) Performing minimization step: 38. Total energy = 377131.4289 kcal/mol (375976.1375 without restraints) Performing minimization step: 39. Total energy = 367553.9562 kcal/mol (366433.4225 without restraints) Performing minimization step: 40. Total energy = 358265.9516 kcal/mol (357179.0011 without restraints) Performing minimization step: 41. Total energy = 349257.6523 kcal/mol (348203.1544 without restraints) Performing minimization step: 42. Total energy = 340519.6579 kcal/mol (339496.5239 without restraints) Performing minimization step: 43. Total energy = 332042.9149 kcal/mol (331050.0961 without restraints) Performing minimization step: 44. Total energy = 323818.7022 kcal/mol (322855.1883 without restraints) Performing minimization step: 45. Total energy = 315838.6168 kcal/mol (314903.4341 without restraints) Performing minimization step: 46. Total energy = 308094.5607 kcal/mol (307186.7710 without restraints) Performing minimization step: 47. Total energy = 300578.7287 kcal/mol (299697.4274 without restraints) Performing minimization step: 48. Total energy = 293283.5959 kcal/mol (292427.9111 without restraints) Performing minimization step: 49. Total energy = 286201.9069 kcal/mol (285370.9976 without restraints) Performing minimization step: 50. Total energy = 279326.6651 kcal/mol (278519.7203 without restraints) Performing minimization step: 51. Total energy = 272651.1219 kcal/mol (271867.3594 without restraints) Performing minimization step: 52. Total energy = 266168.7676 kcal/mol (265407.4328 without restraints) Performing minimization step: 53. Total energy = 259873.3217 kcal/mol (259133.6863 without restraints) Performing minimization step: 54. Total energy = 253758.7240 kcal/mol (253040.0855 without restraints) Performing minimization step: 55. Total energy = 247819.1266 kcal/mol (247120.8068 without restraints) Performing minimization step: 56. Total energy = 242048.8852 kcal/mol (241370.2298 without restraints) Performing minimization step: 57. Total energy = 236442.5518 kcal/mol (235782.9290 without restraints) Performing minimization step: 58. Total energy = 230994.8675 kcal/mol (230353.6673 without restraints) Performing minimization step: 59. Total energy = 225700.7547 kcal/mol (225077.3884 without restraints) Performing minimization step: 60. Total energy = 220555.3112 kcal/mol (219949.2102 without restraints) Performing minimization step: 61. Total energy = 215553.8031 kcal/mol (214964.4183 without restraints) Performing minimization step: 62. Total energy = 210691.6589 kcal/mol (210118.4601 without restraints) Performing minimization step: 63. Total energy = 205964.4637 kcal/mol (205406.9387 without restraints) Performing minimization step: 64. Total energy = 201367.9531 kcal/mol (200825.6074 without restraints) Performing minimization step: 65. Total energy = 196898.0082 kcal/mol (196370.3639 without restraints) Performing minimization step: 66. Total energy = 192550.6502 kcal/mol (192037.2457 without restraints) Performing minimization step: 67. Total energy = 188322.0347 kcal/mol (187822.4241 without restraints) Performing minimization step: 68. Total energy = 184208.4483 kcal/mol (183722.2007 without restraints) Performing minimization step: 69. Total energy = 180206.3027 kcal/mol (179733.0019 without restraints) Performing minimization step: 70. Total energy = 176312.1307 kcal/mol (175851.3745 without restraints) Performing minimization step: 71. Total energy = 172522.5826 kcal/mol (172073.9822 without restraints) Performing minimization step: 72. Total energy = 168834.4207 kcal/mol (168397.6005 without restraints) Performing minimization step: 73. Total energy = 165244.5162 kcal/mol (164819.1131 without restraints) Performing minimization step: 74. Total energy = 161749.8453 kcal/mol (161335.5084 without restraints) Performing minimization step: 75. Total energy = 158347.4855 kcal/mol (157943.8758 without restraints) Performing minimization step: 76. Total energy = 155034.6123 kcal/mol (154641.4021 without restraints) Performing minimization step: 77. Total energy = 151808.4951 kcal/mol (151425.3673 without restraints) Performing minimization step: 78. Total energy = 148666.4946 kcal/mol (148293.1432 without restraints) Performing minimization step: 79. Total energy = 145606.0596 kcal/mol (145242.1883 without restraints) Performing minimization step: 80. Total energy = 142624.7233 kcal/mol (142270.0460 without restraints) Performing minimization step: 81. Total energy = 139720.1017 kcal/mol (139374.3417 without restraints) Performing minimization step: 82. Total energy = 136889.8895 kcal/mol (136552.7792 without restraints) Performing minimization step: 83. Total energy = 134131.8573 kcal/mol (133803.1382 without restraints) Performing minimization step: 84. Total energy = 131443.8501 kcal/mol (131123.2717 without restraints) Performing minimization step: 85. Total energy = 128823.7838 kcal/mol (128511.1044 without restraints) Performing minimization step: 86. Total energy = 126269.6433 kcal/mol (125964.6290 without restraints) Performing minimization step: 87. Total energy = 123779.4798 kcal/mol (123481.9045 without restraints) Performing minimization step: 88. Total energy = 121351.4089 kcal/mol (121061.0538 without restraints) Performing minimization step: 89. Total energy = 118983.6078 kcal/mol (118700.2613 without restraints) Performing minimization step: 90. Total energy = 116674.3137 kcal/mol (116397.7712 without restraints) Performing minimization step: 91. Total energy = 114421.8214 kcal/mol (114151.8850 without restraints) Performing minimization step: 92. Total energy = 112224.4818 kcal/mol (111960.9599 without restraints) Performing minimization step: 93. Total energy = 110080.6992 kcal/mol (109823.4068 without restraints) Performing minimization step: 94. Total energy = 107988.9303 kcal/mol (107737.6881 without restraints) Performing minimization step: 95. Total energy = 105947.6819 kcal/mol (105702.3166 without restraints) Performing minimization step: 96. Total energy = 103955.5093 kcal/mol (103715.8532 without restraints) Performing minimization step: 97. Total energy = 102011.0146 kcal/mol (101776.9053 without restraints) Performing minimization step: 98. Total energy = 100112.8452 kcal/mol (99884.1257 without restraints) Performing minimization step: 99. Total energy = 98259.6920 kcal/mol (98036.2103 without restraints) Performing minimization step: 100. Total energy = 96450.2882 kcal/mol (96231.8972 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 101. Total energy = 94683.4077 kcal/mol (94469.9651 without restraints) Performing minimization step: 102. Total energy = 92957.8637 kcal/mol (92749.2316 without restraints) Performing minimization step: 103. Total energy = 91272.5074 kcal/mol (91068.5524 without restraints) Performing minimization step: 104. Total energy = 89626.2266 kcal/mol (89426.8195 without restraints) Performing minimization step: 105. Total energy = 88017.9444 kcal/mol (87822.9602 without restraints) Performing minimization step: 106. Total energy = 86446.6183 kcal/mol (86255.9359 without restraints) Performing minimization step: 107. Total energy = 84911.2385 kcal/mol (84724.7407 without restraints) Performing minimization step: 108. Total energy = 83410.8274 kcal/mol (83228.4005 without restraints) Performing minimization step: 109. Total energy = 81944.4379 kcal/mol (81765.9719 without restraints) Performing minimization step: 110. Total energy = 80511.1526 kcal/mol (80336.5410 without restraints) Performing minimization step: 111. Total energy = 79110.0830 kcal/mol (78939.2225 without restraints) Performing minimization step: 112. Total energy = 77740.3679 kcal/mol (77573.1586 without restraints) Performing minimization step: 113. Total energy = 76401.1734 kcal/mol (76237.5182 without restraints) Performing minimization step: 114. Total energy = 75091.6908 kcal/mol (74931.4960 without restraints) Performing minimization step: 115. Total energy = 73811.1368 kcal/mol (73654.3112 without restraints) Performing minimization step: 116. Total energy = 72558.7520 kcal/mol (72405.2074 without restraints) Performing minimization step: 117. Total energy = 71333.8007 kcal/mol (71183.4516 without restraints) Performing minimization step: 118. Total energy = 70135.5684 kcal/mol (69988.3317 without restraints) Performing minimization step: 119. Total energy = 68963.3634 kcal/mol (68819.1588 without restraints) Performing minimization step: 120. Total energy = 67816.5148 kcal/mol (67675.2644 without restraints) Performing minimization step: 121. Total energy = 66694.3718 kcal/mol (66555.9998 without restraints) Performing minimization step: 122. Total energy = 65596.3031 kcal/mol (65460.7361 without restraints) Performing minimization step: 123. Total energy = 64521.6964 kcal/mol (64388.8632 without restraints) Performing minimization step: 124. Total energy = 63469.9575 kcal/mol (63339.7891 without restraints) Performing minimization step: 125. Total energy = 62440.5100 kcal/mol (62312.9394 without restraints) Performing minimization step: 126. Total energy = 61432.7943 kcal/mol (61307.7565 without restraints) Performing minimization step: 127. Total energy = 60446.2676 kcal/mol (60323.6993 without restraints) Performing minimization step: 128. Total energy = 59480.4027 kcal/mol (59360.2427 without restraints) Performing minimization step: 129. Total energy = 58534.6878 kcal/mol (58416.8764 without restraints) Performing minimization step: 130. Total energy = 57608.6262 kcal/mol (57493.1059 without restraints) Performing minimization step: 131. Total energy = 56701.7354 kcal/mol (56588.4499 without restraints) Performing minimization step: 132. Total energy = 55813.5468 kcal/mol (55702.4416 without restraints) Performing minimization step: 133. Total energy = 54943.6052 kcal/mol (54834.6275 without restraints) Performing minimization step: 134. Total energy = 54091.4684 kcal/mol (53984.5667 without restraints) Performing minimization step: 135. Total energy = 53256.7069 kcal/mol (53151.8312 without restraints) Performing minimization step: 136. Total energy = 52438.9032 kcal/mol (52336.0048 without restraints) Performing minimization step: 137. Total energy = 51637.6512 kcal/mol (51536.6831 without restraints) Performing minimization step: 138. Total energy = 50852.5573 kcal/mol (50753.4734 without restraints) Performing minimization step: 139. Total energy = 50083.2377 kcal/mol (49985.9935 without restraints) Performing minimization step: 140. Total energy = 49329.3197 kcal/mol (49233.8719 without restraints) Performing minimization step: 141. Total energy = 48590.4411 kcal/mol (48496.7474 without restraints) Performing minimization step: 142. Total energy = 47866.2493 kcal/mol (47774.2687 without restraints) Performing minimization step: 143. Total energy = 47156.4016 kcal/mol (47066.0942 without restraints) Performing minimization step: 144. Total energy = 46460.5647 kcal/mol (46371.8917 without restraints) Performing minimization step: 145. Total energy = 45778.4141 kcal/mol (45691.3377 without restraints) Performing minimization step: 146. Total energy = 45109.6345 kcal/mol (45024.1180 without restraints) Performing minimization step: 147. Total energy = 44453.9183 kcal/mol (44369.9260 without restraints) Performing minimization step: 148. Total energy = 43810.9667 kcal/mol (43728.4638 without restraints) Performing minimization step: 149. Total energy = 43180.4894 kcal/mol (43099.4420 without restraints) Performing minimization step: 150. Total energy = 42562.2027 kcal/mol (42482.5778 without restraints) Performing minimization step: 151. Total energy = 41955.8311 kcal/mol (41877.5965 without restraints) Performing minimization step: 152. Total energy = 41361.1061 kcal/mol (41284.2308 without restraints) Performing minimization step: 153. Total energy = 40777.7665 kcal/mol (40702.2199 without restraints) Performing minimization step: 154. Total energy = 40205.5575 kcal/mol (40131.3097 without restraints) Performing minimization step: 155. Total energy = 39644.2311 kcal/mol (39571.2535 without restraints) Performing minimization step: 156. Total energy = 39093.5458 kcal/mol (39021.8102 without restraints) Performing minimization step: 157. Total energy = 38553.2664 kcal/mol (38482.7454 without restraints) Performing minimization step: 158. Total energy = 38023.1635 kcal/mol (37953.8304 without restraints) Performing minimization step: 159. Total energy = 37503.0139 kcal/mol (37434.8426 without restraints) Performing minimization step: 160. Total energy = 36992.5996 kcal/mol (36925.5648 without restraints) Performing minimization step: 161. Total energy = 36491.7085 kcal/mol (36425.7854 without restraints) Performing minimization step: 162. Total energy = 36000.1338 kcal/mol (35935.2983 without restraints) Performing minimization step: 163. Total energy = 35517.6738 kcal/mol (35453.9026 without restraints) Performing minimization step: 164. Total energy = 35044.1319 kcal/mol (34981.4018 without restraints) Performing minimization step: 165. Total energy = 34579.3162 kcal/mol (34517.6050 without restraints) Performing minimization step: 166. Total energy = 34123.0399 kcal/mol (34062.3257 without restraints) Performing minimization step: 167. Total energy = 33675.1206 kcal/mol (33615.3823 without restraints) Performing minimization step: 168. Total energy = 33235.3805 kcal/mol (33176.5973 without restraints) Performing minimization step: 169. Total energy = 32803.6462 kcal/mol (32745.7978 without restraints) Performing minimization step: 170. Total energy = 32379.7483 kcal/mol (32322.8151 without restraints) Performing minimization step: 171. Total energy = 31963.5218 kcal/mol (31907.4845 without restraints) Performing minimization step: 172. Total energy = 31554.8056 kcal/mol (31499.6454 without restraints) Performing minimization step: 173. Total energy = 31153.4428 kcal/mol (31099.1413 without restraints) Performing minimization step: 174. Total energy = 30759.2793 kcal/mol (30705.8187 without restraints) Performing minimization step: 175. Total energy = 30372.1657 kcal/mol (30319.5286 without restraints) Performing minimization step: 176. Total energy = 29991.9558 kcal/mol (29940.1251 without restraints) Performing minimization step: 177. Total energy = 29618.5071 kcal/mol (29567.4660 without restraints) Performing minimization step: 178. Total energy = 29251.6800 kcal/mol (29201.4125 without restraints) Performing minimization step: 179. Total energy = 28891.3388 kcal/mol (28841.8289 without restraints) Performing minimization step: 180. Total energy = 28537.3506 kcal/mol (28488.5828 without restraints) Performing minimization step: 181. Total energy = 28189.5856 kcal/mol (28141.5449 without restraints) Performing minimization step: 182. Total energy = 27847.9173 kcal/mol (27800.5889 without restraints) Performing minimization step: 183. Total energy = 27512.2220 kcal/mol (27465.5914 without restraints) Performing minimization step: 184. Total energy = 27182.3789 kcal/mol (27136.4320 without restraints) Performing minimization step: 185. Total energy = 26858.2699 kcal/mol (26812.9930 without restraints) Performing minimization step: 186. Total energy = 26539.7798 kcal/mol (26495.1594 without restraints) Performing minimization step: 187. Total energy = 26226.7961 kcal/mol (26182.8191 without restraints) Performing minimization step: 188. Total energy = 25919.2085 kcal/mol (25875.8620 without restraints) Performing minimization step: 189. Total energy = 25616.9094 kcal/mol (25574.1809 without restraints) Performing minimization step: 190. Total energy = 25319.7940 kcal/mol (25277.6712 without restraints) Performing minimization step: 191. Total energy = 25027.7594 kcal/mol (24986.2304 without restraints) Performing minimization step: 192. Total energy = 24740.7054 kcal/mol (24699.7584 without restraints) Performing minimization step: 193. Total energy = 24458.5337 kcal/mol (24418.1573 without restraints) Performing minimization step: 194. Total energy = 24181.1485 kcal/mol (24141.3315 without restraints) Performing minimization step: 195. Total energy = 23908.4561 kcal/mol (23869.1875 without restraints) Performing minimization step: 196. Total energy = 23640.3647 kcal/mol (23601.6339 without restraints) Performing minimization step: 197. Total energy = 23376.7848 kcal/mol (23338.5813 without restraints) Performing minimization step: 198. Total energy = 23117.6289 kcal/mol (23079.9426 without restraints) Performing minimization step: 199. Total energy = 22862.8112 kcal/mol (22825.6318 without restraints) Performing minimization step: 200. Total energy = 22612.2477 kcal/mol (22575.5656 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 201. Total energy = 22365.8567 kcal/mol (22329.6623 without restraints) Performing minimization step: 202. Total energy = 22123.5580 kcal/mol (22087.8419 without restraints) Performing minimization step: 203. Total energy = 21885.2732 kcal/mol (21850.0263 without restraints) Performing minimization step: 204. Total energy = 21650.9255 kcal/mol (21616.1390 without restraints) Performing minimization step: 205. Total energy = 21420.4401 kcal/mol (21386.1050 without restraints) Performing minimization step: 206. Total energy = 21193.7434 kcal/mol (21159.8513 without restraints) Performing minimization step: 207. Total energy = 20970.7637 kcal/mol (20937.3061 without restraints) Performing minimization step: 208. Total energy = 20751.4307 kcal/mol (20718.3995 without restraints) Performing minimization step: 209. Total energy = 20535.6759 kcal/mol (20503.0630 without restraints) Performing minimization step: 210. Total energy = 20323.4316 kcal/mol (20291.2292 without restraints) Performing minimization step: 211. Total energy = 20114.6321 kcal/mol (20082.8325 without restraints) Performing minimization step: 212. Total energy = 19909.2132 kcal/mol (19877.8089 without restraints) Performing minimization step: 213. Total energy = 19707.1117 kcal/mol (19676.0951 without restraints) Performing minimization step: 214. Total energy = 19508.2656 kcal/mol (19477.6297 without restraints) Performing minimization step: 215. Total energy = 19312.6144 kcal/mol (19282.3522 without restraints) Performing minimization step: 216. Total energy = 19120.0995 kcal/mol (19090.2040 without restraints) Performing minimization step: 217. Total energy = 18930.6627 kcal/mol (18901.1272 without restraints) Performing minimization step: 218. Total energy = 18744.2473 kcal/mol (18715.0651 without restraints) Performing minimization step: 219. Total energy = 18560.7978 kcal/mol (18531.9624 without restraints) Performing minimization step: 220. Total energy = 18380.2598 kcal/mol (18351.7649 without restraints) Performing minimization step: 221. Total energy = 18202.5800 kcal/mol (18174.4193 without restraints) Performing minimization step: 222. Total energy = 18027.7065 kcal/mol (17999.8741 without restraints) Performing minimization step: 223. Total energy = 17855.5880 kcal/mol (17828.0777 without restraints) Performing minimization step: 224. Total energy = 17686.1746 kcal/mol (17658.9808 without restraints) Performing minimization step: 225. Total energy = 17519.4177 kcal/mol (17492.5345 without restraints) Performing minimization step: 226. Total energy = 17355.2683 kcal/mol (17328.6902 without restraints) Performing minimization step: 227. Total energy = 17193.6801 kcal/mol (17167.4015 without restraints) Performing minimization step: 228. Total energy = 17034.6068 kcal/mol (17008.6224 without restraints) Performing minimization step: 229. Total energy = 16878.0035 kcal/mol (16852.3080 without restraints) Performing minimization step: 230. Total energy = 16723.8261 kcal/mol (16698.4143 without restraints) Performing minimization step: 231. Total energy = 16572.0309 kcal/mol (16546.8979 without restraints) Performing minimization step: 232. Total energy = 16422.5758 kcal/mol (16397.7164 without restraints) Performing minimization step: 233. Total energy = 16275.4190 kcal/mol (16250.8285 without restraints) Performing minimization step: 234. Total energy = 16130.5198 kcal/mol (16106.1934 without restraints) Performing minimization step: 235. Total energy = 15987.8384 kcal/mol (15963.7714 without restraints) Performing minimization step: 236. Total energy = 15847.3355 kcal/mol (15823.5234 without restraints) Performing minimization step: 237. Total energy = 15708.9728 kcal/mol (15685.4111 without restraints) Performing minimization step: 238. Total energy = 15572.7130 kcal/mol (15549.3973 without restraints) Performing minimization step: 239. Total energy = 15438.5186 kcal/mol (15415.4446 without restraints) Performing minimization step: 240. Total energy = 15306.3540 kcal/mol (15283.5175 without restraints) Performing minimization step: 241. Total energy = 15176.1835 kcal/mol (15153.5802 without restraints) Performing minimization step: 242. Total energy = 15047.9723 kcal/mol (15025.5982 without restraints) Performing minimization step: 243. Total energy = 14921.6865 kcal/mol (14899.5377 without restraints) Performing minimization step: 244. Total energy = 14797.2926 kcal/mol (14775.3653 without restraints) Performing minimization step: 245. Total energy = 14674.7581 kcal/mol (14653.0482 without restraints) Performing minimization step: 246. Total energy = 14554.0506 kcal/mol (14532.5546 without restraints) Performing minimization step: 247. Total energy = 14435.1391 kcal/mol (14413.8531 without restraints) Performing minimization step: 248. Total energy = 14317.9920 kcal/mol (14296.9126 without restraints) Performing minimization step: 249. Total energy = 14202.5795 kcal/mol (14181.7030 without restraints) Performing minimization step: 250. Total energy = 14088.8718 kcal/mol (14068.1948 without restraints) Performing minimization step: 251. Total energy = 13976.8397 kcal/mol (13956.3588 without restraints) Performing minimization step: 252. Total energy = 13866.4546 kcal/mol (13846.1665 without restraints) Performing minimization step: 253. Total energy = 13757.6887 kcal/mol (13737.5900 without restraints) Performing minimization step: 254. Total energy = 13650.5142 kcal/mol (13630.6018 without restraints) Performing minimization step: 255. Total energy = 13544.9043 kcal/mol (13525.1750 without restraints) Performing minimization step: 256. Total energy = 13440.8325 kcal/mol (13421.2832 without restraints) Performing minimization step: 257. Total energy = 13338.2728 kcal/mol (13318.9005 without restraints) Performing minimization step: 258. Total energy = 13237.1998 kcal/mol (13218.0014 without restraints) Performing minimization step: 259. Total energy = 13137.5884 kcal/mol (13118.5611 without restraints) Performing minimization step: 260. Total energy = 13039.4140 kcal/mol (13020.5549 without restraints) Performing minimization step: 261. Total energy = 12942.6527 kcal/mol (12923.9590 without restraints) Performing minimization step: 262. Total energy = 12847.2810 kcal/mol (12828.7499 without restraints) Performing minimization step: 263. Total energy = 12753.2753 kcal/mol (12734.9040 without restraints) Performing minimization step: 264. Total energy = 12660.6131 kcal/mol (12642.3991 without restraints) Performing minimization step: 265. Total energy = 12569.2719 kcal/mol (12551.2125 without restraints) Performing minimization step: 266. Total energy = 12479.2305 kcal/mol (12461.3232 without restraints) Performing minimization step: 267. Total energy = 12390.4660 kcal/mol (12372.7083 without restraints) Performing minimization step: 268. Total energy = 12302.9581 kcal/mol (12285.3474 without restraints) Performing minimization step: 269. Total energy = 12216.6859 kcal/mol (12199.2198 without restraints) Performing minimization step: 270. Total energy = 12131.6291 kcal/mol (12114.3053 without restraints) Performing minimization step: 271. Total energy = 12047.7676 kcal/mol (12030.5838 without restraints) Performing minimization step: 272. Total energy = 11965.0820 kcal/mol (11948.0358 without restraints) Performing minimization step: 273. Total energy = 11883.5529 kcal/mol (11866.6420 without restraints) Performing minimization step: 274. Total energy = 11803.1613 kcal/mol (11786.3837 without restraints) Performing minimization step: 275. Total energy = 11723.8887 kcal/mol (11707.2420 without restraints) Performing minimization step: 276. Total energy = 11645.7169 kcal/mol (11629.1990 without restraints) Performing minimization step: 277. Total energy = 11568.6278 kcal/mol (11552.2368 without restraints) Performing minimization step: 278. Total energy = 11492.6040 kcal/mol (11476.3376 without restraints) Performing minimization step: 279. Total energy = 11417.6281 kcal/mol (11401.4845 without restraints) Performing minimization step: 280. Total energy = 11343.6832 kcal/mol (11327.6602 without restraints) Performing minimization step: 281. Total energy = 11270.7525 kcal/mol (11254.8483 without restraints) Performing minimization step: 282. Total energy = 11198.8198 kcal/mol (11183.0324 without restraints) Performing minimization step: 283. Total energy = 11127.8689 kcal/mol (11112.1965 without restraints) Performing minimization step: 284. Total energy = 11057.8840 kcal/mol (11042.3247 without restraints) Performing minimization step: 285. Total energy = 10988.8496 kcal/mol (10973.4015 without restraints) Performing minimization step: 286. Total energy = 10920.7504 kcal/mol (10905.4119 without restraints) Performing minimization step: 287. Total energy = 10853.5715 kcal/mol (10838.3407 without restraints) Performing minimization step: 288. Total energy = 10787.2983 kcal/mol (10772.1736 without restraints) Performing minimization step: 289. Total energy = 10721.9161 kcal/mol (10706.8956 without restraints) Performing minimization step: 290. Total energy = 10657.4106 kcal/mol (10642.4928 without restraints) Performing minimization step: 291. Total energy = 10593.7681 kcal/mol (10578.9514 without restraints) Performing minimization step: 292. Total energy = 10530.9748 kcal/mol (10516.2575 without restraints) Performing minimization step: 293. Total energy = 10469.0174 kcal/mol (10454.3979 without restraints) Performing minimization step: 294. Total energy = 10407.8820 kcal/mol (10393.3588 without restraints) Performing minimization step: 295. Total energy = 10347.5562 kcal/mol (10333.1278 without restraints) Performing minimization step: 296. Total energy = 10288.0271 kcal/mol (10273.6920 without restraints) Performing minimization step: 297. Total energy = 10229.2820 kcal/mol (10215.0387 without restraints) Performing minimization step: 298. Total energy = 10171.3087 kcal/mol (10157.1558 without restraints) Performing minimization step: 299. Total energy = 10114.0949 kcal/mol (10100.0309 without restraints) Performing minimization step: 300. Total energy = 10057.6288 kcal/mol (10043.6523 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 301. Total energy = 10001.8984 kcal/mol (9988.0081 without restraints) Performing minimization step: 302. Total energy = 9946.8925 kcal/mol (9933.0870 without restraints) Performing minimization step: 303. Total energy = 9892.5995 kcal/mol (9878.8775 without restraints) Performing minimization step: 304. Total energy = 9839.0084 kcal/mol (9825.3686 without restraints) Performing minimization step: 305. Total energy = 9786.1082 kcal/mol (9772.5493 without restraints) Performing minimization step: 306. Total energy = 9733.8881 kcal/mol (9720.4088 without restraints) Performing minimization step: 307. Total energy = 9682.3374 kcal/mol (9668.9366 without restraints) Performing minimization step: 308. Total energy = 9631.4459 kcal/mol (9618.1223 without restraints) Performing minimization step: 309. Total energy = 9581.2035 kcal/mol (9567.9558 without restraints) Performing minimization step: 310. Total energy = 9531.5997 kcal/mol (9518.4268 without restraints) Performing minimization step: 311. Total energy = 9482.6248 kcal/mol (9469.5256 without restraints) Performing minimization step: 312. Total energy = 9434.2690 kcal/mol (9421.2423 without restraints) Performing minimization step: 313. Total energy = 9386.5228 kcal/mol (9373.5675 without restraints) Performing minimization step: 314. Total energy = 9339.3767 kcal/mol (9326.4917 without restraints) Performing minimization step: 315. Total energy = 9292.8218 kcal/mol (9280.0060 without restraints) Performing minimization step: 316. Total energy = 9246.8485 kcal/mol (9234.1008 without restraints) Performing minimization step: 317. Total energy = 9201.4480 kcal/mol (9188.7674 without restraints) Performing minimization step: 318. Total energy = 9156.6115 kcal/mol (9143.9970 without restraints) Performing minimization step: 319. Total energy = 9112.3304 kcal/mol (9099.7809 without restraints) Performing minimization step: 320. Total energy = 9068.5962 kcal/mol (9056.1108 without restraints) Performing minimization step: 321. Total energy = 9025.4004 kcal/mol (9012.9780 without restraints) Performing minimization step: 322. Total energy = 8982.7349 kcal/mol (8970.3746 without restraints) Performing minimization step: 323. Total energy = 8940.5915 kcal/mol (8928.2923 without restraints) Performing minimization step: 324. Total energy = 8898.9622 kcal/mol (8886.7233 without restraints) Performing minimization step: 325. Total energy = 8857.8392 kcal/mol (8845.6596 without restraints) Performing minimization step: 326. Total energy = 8817.2148 kcal/mol (8805.0936 without restraints) Performing minimization step: 327. Total energy = 8777.0814 kcal/mol (8765.0177 without restraints) Performing minimization step: 328. Total energy = 8737.4315 kcal/mol (8725.4245 without restraints) Performing minimization step: 329. Total energy = 8698.2578 kcal/mol (8686.3065 without restraints) Performing minimization step: 330. Total energy = 8659.5530 kcal/mol (8647.6566 without restraints) Performing minimization step: 331. Total energy = 8621.3102 kcal/mol (8609.4679 without restraints) Performing minimization step: 332. Total energy = 8583.5222 kcal/mol (8571.7332 without restraints) Performing minimization step: 333. Total energy = 8546.1820 kcal/mol (8534.4454 without restraints) Performing minimization step: 334. Total energy = 8509.2829 kcal/mol (8497.5980 without restraints) Performing minimization step: 335. Total energy = 8472.8184 kcal/mol (8461.1845 without restraints) Performing minimization step: 336. Total energy = 8436.7821 kcal/mol (8425.1982 without restraints) Performing minimization step: 337. Total energy = 8401.1668 kcal/mol (8389.6323 without restraints) Performing minimization step: 338. Total energy = 8365.9667 kcal/mol (8354.4808 without restraints) Performing minimization step: 339. Total energy = 8331.1755 kcal/mol (8319.7375 without restraints) Performing minimization step: 340. Total energy = 8296.7870 kcal/mol (8285.3961 without restraints) Performing minimization step: 341. Total energy = 8262.7951 kcal/mol (8251.4507 without restraints) Performing minimization step: 342. Total energy = 8229.1939 kcal/mol (8217.8954 without restraints) Performing minimization step: 343. Total energy = 8195.9776 kcal/mol (8184.7241 without restraints) Performing minimization step: 344. Total energy = 8163.1400 kcal/mol (8151.9309 without restraints) Performing minimization step: 345. Total energy = 8130.6763 kcal/mol (8119.5109 without restraints) Performing minimization step: 346. Total energy = 8098.5801 kcal/mol (8087.4577 without restraints) Performing minimization step: 347. Total energy = 8066.8464 kcal/mol (8055.7664 without restraints) Performing minimization step: 348. Total energy = 8035.4692 kcal/mol (8024.4311 without restraints) Performing minimization step: 349. Total energy = 8004.4437 kcal/mol (7993.4468 without restraints) Performing minimization step: 350. Total energy = 7973.7644 kcal/mol (7962.8080 without restraints) Performing minimization step: 351. Total energy = 7943.4262 kcal/mol (7932.5098 without restraints) Performing minimization step: 352. Total energy = 7913.4240 kcal/mol (7902.5470 without restraints) Performing minimization step: 353. Total energy = 7883.7529 kcal/mol (7872.9146 without restraints) Performing minimization step: 354. Total energy = 7854.4076 kcal/mol (7843.6075 without restraints) Performing minimization step: 355. Total energy = 7825.3837 kcal/mol (7814.6213 without restraints) Performing minimization step: 356. Total energy = 7796.6763 kcal/mol (7785.9509 without restraints) Performing minimization step: 357. Total energy = 7768.2807 kcal/mol (7757.5919 without restraints) Performing minimization step: 358. Total energy = 7740.1923 kcal/mol (7729.5396 without restraints) Performing minimization step: 359. Total energy = 7712.4065 kcal/mol (7701.7891 without restraints) Performing minimization step: 360. Total energy = 7684.9190 kcal/mol (7674.3364 without restraints) Performing minimization step: 361. Total energy = 7657.7246 kcal/mol (7647.1765 without restraints) Performing minimization step: 362. Total energy = 7630.8198 kcal/mol (7620.3055 without restraints) Performing minimization step: 363. Total energy = 7604.2000 kcal/mol (7593.7192 without restraints) Performing minimization step: 364. Total energy = 7577.8613 kcal/mol (7567.4134 without restraints) Performing minimization step: 365. Total energy = 7551.7991 kcal/mol (7541.3835 without restraints) Performing minimization step: 366. Total energy = 7526.0094 kcal/mol (7515.6258 without restraints) Performing minimization step: 367. Total energy = 7500.4886 kcal/mol (7490.1365 without restraints) Performing minimization step: 368. Total energy = 7475.2323 kcal/mol (7464.9113 without restraints) Performing minimization step: 369. Total energy = 7450.2369 kcal/mol (7439.9463 without restraints) Performing minimization step: 370. Total energy = 7425.4982 kcal/mol (7415.2378 without restraints) Performing minimization step: 371. Total energy = 7401.0126 kcal/mol (7390.7818 without restraints) Performing minimization step: 372. Total energy = 7376.7763 kcal/mol (7366.5746 without restraints) Performing minimization step: 373. Total energy = 7352.7857 kcal/mol (7342.6128 without restraints) Performing minimization step: 374. Total energy = 7329.0372 kcal/mol (7318.8927 without restraints) Performing minimization step: 375. Total energy = 7305.5273 kcal/mol (7295.4107 without restraints) Performing minimization step: 376. Total energy = 7282.2523 kcal/mol (7272.1633 without restraints) Performing minimization step: 377. Total energy = 7259.2091 kcal/mol (7249.1473 without restraints) Performing minimization step: 378. Total energy = 7236.3942 kcal/mol (7226.3590 without restraints) Performing minimization step: 379. Total energy = 7213.8041 kcal/mol (7203.7953 without restraints) Performing minimization step: 380. Total energy = 7191.4357 kcal/mol (7181.4529 without restraints) Performing minimization step: 381. Total energy = 7169.2856 kcal/mol (7159.3283 without restraints) Performing minimization step: 382. Total energy = 7147.3506 kcal/mol (7137.4185 without restraints) Performing minimization step: 383. Total energy = 7125.6275 kcal/mol (7115.7202 without restraints) Performing minimization step: 384. Total energy = 7104.1137 kcal/mol (7094.2309 without restraints) Performing minimization step: 385. Total energy = 7082.8058 kcal/mol (7072.9472 without restraints) Performing minimization step: 386. Total energy = 7061.7008 kcal/mol (7051.8660 without restraints) Performing minimization step: 387. Total energy = 7040.7959 kcal/mol (7030.9845 without restraints) Performing minimization step: 388. Total energy = 7020.0880 kcal/mol (7010.2997 without restraints) Performing minimization step: 389. Total energy = 6999.5744 kcal/mol (6989.8088 without restraints) Performing minimization step: 390. Total energy = 6979.2522 kcal/mol (6969.5090 without restraints) Performing minimization step: 391. Total energy = 6959.1186 kcal/mol (6949.3976 without restraints) Performing minimization step: 392. Total energy = 6939.1710 kcal/mol (6929.4717 without restraints) Performing minimization step: 393. Total energy = 6919.4063 kcal/mol (6909.7285 without restraints) Performing minimization step: 394. Total energy = 6899.8226 kcal/mol (6890.1659 without restraints) Performing minimization step: 395. Total energy = 6880.4167 kcal/mol (6870.7809 without restraints) Performing minimization step: 396. Total energy = 6861.1863 kcal/mol (6851.5710 without restraints) Performing minimization step: 397. Total energy = 6842.1285 kcal/mol (6832.5334 without restraints) Performing minimization step: 398. Total energy = 6823.2414 kcal/mol (6813.6665 without restraints) Performing minimization step: 399. Total energy = 6804.5221 kcal/mol (6794.9667 without restraints) Performing minimization step: 400. Total energy = 6785.9687 kcal/mol (6776.4327 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 401. Total energy = 6767.5783 kcal/mol (6758.0614 without restraints) Performing minimization step: 402. Total energy = 6749.3487 kcal/mol (6739.8507 without restraints) Performing minimization step: 403. Total energy = 6731.2777 kcal/mol (6721.7982 without restraints) Performing minimization step: 404. Total energy = 6713.3629 kcal/mol (6703.9018 without restraints) Performing minimization step: 405. Total energy = 6695.6022 kcal/mol (6686.1591 without restraints) Performing minimization step: 406. Total energy = 6677.9933 kcal/mol (6668.5680 without restraints) Performing minimization step: 407. Total energy = 6660.5340 kcal/mol (6651.1262 without restraints) Performing minimization step: 408. Total energy = 6643.2223 kcal/mol (6633.8317 without restraints) Performing minimization step: 409. Total energy = 6626.0564 kcal/mol (6616.6829 without restraints) Performing minimization step: 410. Total energy = 6609.0335 kcal/mol (6599.6768 without restraints) Performing minimization step: 411. Total energy = 6592.1523 kcal/mol (6582.8124 without restraints) Performing minimization step: 412. Total energy = 6575.4106 kcal/mol (6566.0868 without restraints) Performing minimization step: 413. Total energy = 6558.8065 kcal/mol (6549.4989 without restraints) Performing minimization step: 414. Total energy = 6542.3377 kcal/mol (6533.0459 without restraints) Performing minimization step: 415. Total energy = 6526.0023 kcal/mol (6516.7262 without restraints) Performing minimization step: 416. Total energy = 6509.7987 kcal/mol (6500.5380 without restraints) Performing minimization step: 417. Total energy = 6493.7250 kcal/mol (6484.4795 without restraints) Performing minimization step: 418. Total energy = 6477.7795 kcal/mol (6468.5491 without restraints) Performing minimization step: 419. Total energy = 6461.9601 kcal/mol (6452.7444 without restraints) Performing minimization step: 420. Total energy = 6446.2650 kcal/mol (6437.0639 without restraints) Performing minimization step: 421. Total energy = 6430.6929 kcal/mol (6421.5061 without restraints) Performing minimization step: 422. Total energy = 6415.2418 kcal/mol (6406.0692 without restraints) Performing minimization step: 423. Total energy = 6399.9101 kcal/mol (6390.7515 without restraints) Performing minimization step: 424. Total energy = 6384.6962 kcal/mol (6375.5514 without restraints) Performing minimization step: 425. Total energy = 6369.5983 kcal/mol (6360.4672 without restraints) Performing minimization step: 426. Total energy = 6354.6150 kcal/mol (6345.4973 without restraints) Performing minimization step: 427. Total energy = 6339.7442 kcal/mol (6330.6397 without restraints) Performing minimization step: 428. Total energy = 6324.9853 kcal/mol (6315.8938 without restraints) Performing minimization step: 429. Total energy = 6310.3361 kcal/mol (6301.2576 without restraints) Performing minimization step: 430. Total energy = 6295.7952 kcal/mol (6286.7293 without restraints) Performing minimization step: 431. Total energy = 6281.3613 kcal/mol (6272.3079 without restraints) Performing minimization step: 432. Total energy = 6267.0329 kcal/mol (6257.9918 without restraints) Performing minimization step: 433. Total energy = 6252.8084 kcal/mol (6243.7795 without restraints) Performing minimization step: 434. Total energy = 6238.6863 kcal/mol (6229.6695 without restraints) Performing minimization step: 435. Total energy = 6224.6658 kcal/mol (6215.6608 without restraints) Performing minimization step: 436. Total energy = 6210.7446 kcal/mol (6201.7513 without restraints) Performing minimization step: 437. Total energy = 6196.9225 kcal/mol (6187.9408 without restraints) Performing minimization step: 438. Total energy = 6183.1974 kcal/mol (6174.2270 without restraints) Performing minimization step: 439. Total energy = 6169.5681 kcal/mol (6160.6090 without restraints) Performing minimization step: 440. Total energy = 6156.0334 kcal/mol (6147.0854 without restraints) Performing minimization step: 441. Total energy = 6142.5921 kcal/mol (6133.6550 without restraints) Performing minimization step: 442. Total energy = 6129.2427 kcal/mol (6120.3163 without restraints) Performing minimization step: 443. Total energy = 6115.9843 kcal/mol (6107.0686 without restraints) Performing minimization step: 444. Total energy = 6102.8156 kcal/mol (6093.9104 without restraints) Performing minimization step: 445. Total energy = 6089.7354 kcal/mol (6080.8407 without restraints) Performing minimization step: 446. Total energy = 6076.7426 kcal/mol (6067.8581 without restraints) Performing minimization step: 447. Total energy = 6063.8360 kcal/mol (6054.9616 without restraints) Performing minimization step: 448. Total energy = 6051.0145 kcal/mol (6042.1500 without restraints) Performing minimization step: 449. Total energy = 6038.2771 kcal/mol (6029.4226 without restraints) Performing minimization step: 450. Total energy = 6025.6226 kcal/mol (6016.7777 without restraints) Performing minimization step: 451. Total energy = 6013.0497 kcal/mol (6004.2144 without restraints) Performing minimization step: 452. Total energy = 6000.5578 kcal/mol (5991.7319 without restraints) Performing minimization step: 453. Total energy = 5988.1455 kcal/mol (5979.3290 without restraints) Performing minimization step: 454. Total energy = 5975.8121 kcal/mol (5967.0048 without restraints) Performing minimization step: 455. Total energy = 5963.5564 kcal/mol (5954.7582 without restraints) Performing minimization step: 456. Total energy = 5951.3771 kcal/mol (5942.5879 without restraints) Performing minimization step: 457. Total energy = 5939.2736 kcal/mol (5930.4933 without restraints) Performing minimization step: 458. Total energy = 5927.2450 kcal/mol (5918.4734 without restraints) Performing minimization step: 459. Total energy = 5915.2901 kcal/mol (5906.5272 without restraints) Performing minimization step: 460. Total energy = 5903.4082 kcal/mol (5894.6538 without restraints) Performing minimization step: 461. Total energy = 5891.5985 kcal/mol (5882.8528 without restraints) Performing minimization step: 462. Total energy = 5879.8600 kcal/mol (5871.1224 without restraints) Performing minimization step: 463. Total energy = 5868.1919 kcal/mol (5859.4626 without restraints) Performing minimization step: 464. Total energy = 5856.5928 kcal/mol (5847.8716 without restraints) Performing minimization step: 465. Total energy = 5845.0624 kcal/mol (5836.3492 without restraints) Performing minimization step: 466. Total energy = 5833.5994 kcal/mol (5824.8943 without restraints) Performing minimization step: 467. Total energy = 5822.2035 kcal/mol (5813.5060 without restraints) Performing minimization step: 468. Total energy = 5810.8735 kcal/mol (5802.1838 without restraints) Performing minimization step: 469. Total energy = 5799.6087 kcal/mol (5790.9267 without restraints) Performing minimization step: 470. Total energy = 5788.4089 kcal/mol (5779.7344 without restraints) Performing minimization step: 471. Total energy = 5777.2724 kcal/mol (5768.6054 without restraints) Performing minimization step: 472. Total energy = 5766.1988 kcal/mol (5757.5390 without restraints) Performing minimization step: 473. Total energy = 5755.1872 kcal/mol (5746.5349 without restraints) Performing minimization step: 474. Total energy = 5744.2373 kcal/mol (5735.5921 without restraints) Performing minimization step: 475. Total energy = 5733.3480 kcal/mol (5724.7100 without restraints) Performing minimization step: 476. Total energy = 5722.5188 kcal/mol (5713.8878 without restraints) Performing minimization step: 477. Total energy = 5711.7489 kcal/mol (5703.1249 without restraints) Performing minimization step: 478. Total energy = 5701.0376 kcal/mol (5692.4205 without restraints) Performing minimization step: 479. Total energy = 5690.3843 kcal/mol (5681.7739 without restraints) Performing minimization step: 480. Total energy = 5679.7882 kcal/mol (5671.1846 without restraints) Performing minimization step: 481. Total energy = 5669.2488 kcal/mol (5660.6518 without restraints) Performing minimization step: 482. Total energy = 5658.7653 kcal/mol (5650.1749 without restraints) Performing minimization step: 483. Total energy = 5648.3371 kcal/mol (5639.7531 without restraints) Performing minimization step: 484. Total energy = 5637.9637 kcal/mol (5629.3862 without restraints) Performing minimization step: 485. Total energy = 5627.6445 kcal/mol (5619.0733 without restraints) Performing minimization step: 486. Total energy = 5617.3789 kcal/mol (5608.8140 without restraints) Performing minimization step: 487. Total energy = 5607.1660 kcal/mol (5598.6073 without restraints) Performing minimization step: 488. Total energy = 5597.0055 kcal/mol (5588.4529 without restraints) Performing minimization step: 489. Total energy = 5586.8967 kcal/mol (5578.3502 without restraints) Performing minimization step: 490. Total energy = 5576.8390 kcal/mol (5568.2984 without restraints) Performing minimization step: 491. Total energy = 5566.8321 kcal/mol (5558.2975 without restraints) Performing minimization step: 492. Total energy = 5556.8752 kcal/mol (5548.3465 without restraints) Performing minimization step: 493. Total energy = 5546.9679 kcal/mol (5538.4450 without restraints) Performing minimization step: 494. Total energy = 5537.1093 kcal/mol (5528.5922 without restraints) Performing minimization step: 495. Total energy = 5527.2994 kcal/mol (5518.7880 without restraints) Performing minimization step: 496. Total energy = 5517.5375 kcal/mol (5509.0317 without restraints) Performing minimization step: 497. Total energy = 5507.8231 kcal/mol (5499.3228 without restraints) Performing minimization step: 498. Total energy = 5498.1556 kcal/mol (5489.6609 without restraints) Performing minimization step: 499. Total energy = 5488.5346 kcal/mol (5480.0453 without restraints) Performing minimization step: 500. Total energy = 5478.9597 kcal/mol (5470.4758 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 501. Total energy = 5469.4301 kcal/mol (5460.9514 without restraints) Performing minimization step: 502. Total energy = 5459.9455 kcal/mol (5451.4722 without restraints) Performing minimization step: 503. Total energy = 5450.5056 kcal/mol (5442.0376 without restraints) Performing minimization step: 504. Total energy = 5441.1098 kcal/mol (5432.6470 without restraints) Performing minimization step: 505. Total energy = 5431.7577 kcal/mol (5423.3000 without restraints) Performing minimization step: 506. Total energy = 5422.4493 kcal/mol (5413.9966 without restraints) Performing minimization step: 507. Total energy = 5413.1833 kcal/mol (5404.7356 without restraints) Performing minimization step: 508. Total energy = 5403.9594 kcal/mol (5395.5167 without restraints) Performing minimization step: 509. Total energy = 5394.7777 kcal/mol (5386.3400 without restraints) Performing minimization step: 510. Total energy = 5385.6375 kcal/mol (5377.2047 without restraints) Performing minimization step: 511. Total energy = 5376.5385 kcal/mol (5368.1105 without restraints) Performing minimization step: 512. Total energy = 5367.4803 kcal/mol (5359.0571 without restraints) Performing minimization step: 513. Total energy = 5358.4621 kcal/mol (5350.0437 without restraints) Performing minimization step: 514. Total energy = 5349.4845 kcal/mol (5341.0707 without restraints) Performing minimization step: 515. Total energy = 5340.5459 kcal/mol (5332.1367 without restraints) Performing minimization step: 516. Total energy = 5331.6468 kcal/mol (5323.2422 without restraints) Performing minimization step: 517. Total energy = 5322.7868 kcal/mol (5314.3868 without restraints) Performing minimization step: 518. Total energy = 5313.9650 kcal/mol (5305.5696 without restraints) Performing minimization step: 519. Total energy = 5305.1814 kcal/mol (5296.7904 without restraints) Performing minimization step: 520. Total energy = 5296.4356 kcal/mol (5288.0491 without restraints) Performing minimization step: 521. Total energy = 5287.7273 kcal/mol (5279.3452 without restraints) Performing minimization step: 522. Total energy = 5279.0562 kcal/mol (5270.6784 without restraints) Performing minimization step: 523. Total energy = 5270.4216 kcal/mol (5262.0481 without restraints) Performing minimization step: 524. Total energy = 5261.8233 kcal/mol (5253.4541 without restraints) Performing minimization step: 525. Total energy = 5253.2607 kcal/mol (5244.8958 without restraints) Performing minimization step: 526. Total energy = 5244.7344 kcal/mol (5236.3738 without restraints) Performing minimization step: 527. Total energy = 5236.2438 kcal/mol (5227.8873 without restraints) Performing minimization step: 528. Total energy = 5227.7880 kcal/mol (5219.4356 without restraints) Performing minimization step: 529. Total energy = 5219.3666 kcal/mol (5211.0182 without restraints) Performing minimization step: 530. Total energy = 5210.9801 kcal/mol (5202.6358 without restraints) Performing minimization step: 531. Total energy = 5202.6278 kcal/mol (5194.2875 without restraints) Performing minimization step: 532. Total energy = 5194.3096 kcal/mol (5185.9732 without restraints) Performing minimization step: 533. Total energy = 5186.0248 kcal/mol (5177.6925 without restraints) Performing minimization step: 534. Total energy = 5177.7735 kcal/mol (5169.4451 without restraints) Performing minimization step: 535. Total energy = 5169.5552 kcal/mol (5161.2307 without restraints) Performing minimization step: 536. Total energy = 5161.3699 kcal/mol (5153.0492 without restraints) Performing minimization step: 537. Total energy = 5153.2170 kcal/mol (5144.9001 without restraints) Performing minimization step: 538. Total energy = 5145.0962 kcal/mol (5136.7831 without restraints) Performing minimization step: 539. Total energy = 5137.0076 kcal/mol (5128.6983 without restraints) Performing minimization step: 540. Total energy = 5128.9506 kcal/mol (5120.6450 without restraints) Performing minimization step: 541. Total energy = 5120.9250 kcal/mol (5112.6232 without restraints) Performing minimization step: 542. Total energy = 5112.9305 kcal/mol (5104.6323 without restraints) Performing minimization step: 543. Total energy = 5104.9671 kcal/mol (5096.6725 without restraints) Performing minimization step: 544. Total energy = 5097.0344 kcal/mol (5088.7435 without restraints) Performing minimization step: 545. Total energy = 5089.1322 kcal/mol (5080.8448 without restraints) Performing minimization step: 546. Total energy = 5081.2602 kcal/mol (5072.9764 without restraints) Performing minimization step: 547. Total energy = 5073.4182 kcal/mol (5065.1379 without restraints) Performing minimization step: 548. Total energy = 5065.6059 kcal/mol (5057.3291 without restraints) Performing minimization step: 549. Total energy = 5057.8234 kcal/mol (5049.5501 without restraints) Performing minimization step: 550. Total energy = 5050.0702 kcal/mol (5041.8003 without restraints) Performing minimization step: 551. Total energy = 5042.3459 kcal/mol (5034.0795 without restraints) Performing minimization step: 552. Total energy = 5034.6504 kcal/mol (5026.3874 without restraints) Performing minimization step: 553. Total energy = 5026.9837 kcal/mol (5018.7240 without restraints) Performing minimization step: 554. Total energy = 5019.3453 kcal/mol (5011.0891 without restraints) Performing minimization step: 555. Total energy = 5011.7351 kcal/mol (5003.4822 without restraints) Performing minimization step: 556. Total energy = 5004.1530 kcal/mol (4995.9034 without restraints) Performing minimization step: 557. Total energy = 4996.5985 kcal/mol (4988.3521 without restraints) Performing minimization step: 558. Total energy = 4989.0716 kcal/mol (4980.8285 without restraints) Performing minimization step: 559. Total energy = 4981.5722 kcal/mol (4973.3324 without restraints) Performing minimization step: 560. Total energy = 4974.1000 kcal/mol (4965.8633 without restraints) Performing minimization step: 561. Total energy = 4966.6546 kcal/mol (4958.4211 without restraints) Performing minimization step: 562. Total energy = 4959.2360 kcal/mol (4951.0057 without restraints) Performing minimization step: 563. Total energy = 4951.8438 kcal/mol (4943.6166 without restraints) Performing minimization step: 564. Total energy = 4944.4782 kcal/mol (4936.2541 without restraints) Performing minimization step: 565. Total energy = 4937.1392 kcal/mol (4928.9182 without restraints) Performing minimization step: 566. Total energy = 4929.8259 kcal/mol (4921.6080 without restraints) Performing minimization step: 567. Total energy = 4922.5384 kcal/mol (4914.3235 without restraints) Performing minimization step: 568. Total energy = 4915.2766 kcal/mol (4907.0646 without restraints) Performing minimization step: 569. Total energy = 4908.0403 kcal/mol (4899.8314 without restraints) Performing minimization step: 570. Total energy = 4900.8292 kcal/mol (4892.6233 without restraints) Performing minimization step: 571. Total energy = 4893.6434 kcal/mol (4885.4405 without restraints) Performing minimization step: 572. Total energy = 4886.4826 kcal/mol (4878.2827 without restraints) Performing minimization step: 573. Total energy = 4879.3466 kcal/mol (4871.1495 without restraints) Performing minimization step: 574. Total energy = 4872.2353 kcal/mol (4864.0412 without restraints) Performing minimization step: 575. Total energy = 4865.1485 kcal/mol (4856.9573 without restraints) Performing minimization step: 576. Total energy = 4858.0861 kcal/mol (4849.8977 without restraints) Performing minimization step: 577. Total energy = 4851.0482 kcal/mol (4842.8628 without restraints) Performing minimization step: 578. Total energy = 4844.0334 kcal/mol (4835.8507 without restraints) Performing minimization step: 579. Total energy = 4837.0429 kcal/mol (4828.8631 without restraints) Performing minimization step: 580. Total energy = 4830.0763 kcal/mol (4821.8994 without restraints) Performing minimization step: 581. Total energy = 4823.1333 kcal/mol (4814.9590 without restraints) Performing minimization step: 582. Total energy = 4816.2135 kcal/mol (4808.0421 without restraints) Performing minimization step: 583. Total energy = 4809.3169 kcal/mol (4801.1483 without restraints) Performing minimization step: 584. Total energy = 4802.4436 kcal/mol (4794.2777 without restraints) Performing minimization step: 585. Total energy = 4795.5933 kcal/mol (4787.4300 without restraints) Performing minimization step: 586. Total energy = 4788.7655 kcal/mol (4780.6050 without restraints) Performing minimization step: 587. Total energy = 4781.9606 kcal/mol (4773.8027 without restraints) Performing minimization step: 588. Total energy = 4775.1784 kcal/mol (4767.0232 without restraints) Performing minimization step: 589. Total energy = 4768.4183 kcal/mol (4760.2656 without restraints) Performing minimization step: 590. Total energy = 4761.6800 kcal/mol (4753.5301 without restraints) Performing minimization step: 591. Total energy = 4754.9643 kcal/mol (4746.8171 without restraints) Performing minimization step: 592. Total energy = 4748.2702 kcal/mol (4740.1256 without restraints) Performing minimization step: 593. Total energy = 4741.5984 kcal/mol (4733.4563 without restraints) Performing minimization step: 594. Total energy = 4734.9484 kcal/mol (4726.8088 without restraints) Performing minimization step: 595. Total energy = 4728.3197 kcal/mol (4720.1827 without restraints) Performing minimization step: 596. Total energy = 4721.7125 kcal/mol (4713.5780 without restraints) Performing minimization step: 597. Total energy = 4715.1267 kcal/mol (4706.9948 without restraints) Performing minimization step: 598. Total energy = 4708.5620 kcal/mol (4700.4326 without restraints) Performing minimization step: 599. Total energy = 4702.0185 kcal/mol (4693.8916 without restraints) Performing minimization step: 600. Total energy = 4695.4960 kcal/mol (4687.3716 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 601. Total energy = 4688.9944 kcal/mol (4680.8725 without restraints) Performing minimization step: 602. Total energy = 4682.5134 kcal/mol (4674.3939 without restraints) Performing minimization step: 603. Total energy = 4676.0531 kcal/mol (4667.9361 without restraints) Performing minimization step: 604. Total energy = 4669.6134 kcal/mol (4661.4990 without restraints) Performing minimization step: 605. Total energy = 4663.1937 kcal/mol (4655.0815 without restraints) Performing minimization step: 606. Total energy = 4656.7949 kcal/mol (4648.6853 without restraints) Performing minimization step: 607. Total energy = 4650.4159 kcal/mol (4642.3086 without restraints) Performing minimization step: 608. Total energy = 4644.0570 kcal/mol (4635.9520 without restraints) Performing minimization step: 609. Total energy = 4637.7179 kcal/mol (4629.6153 without restraints) Performing minimization step: 610. Total energy = 4631.3986 kcal/mol (4623.2984 without restraints) Performing minimization step: 611. Total energy = 4625.0990 kcal/mol (4617.0011 without restraints) Performing minimization step: 612. Total energy = 4618.8190 kcal/mol (4610.7235 without restraints) Performing minimization step: 613. Total energy = 4612.5584 kcal/mol (4604.4652 without restraints) Performing minimization step: 614. Total energy = 4606.3172 kcal/mol (4598.2263 without restraints) Performing minimization step: 615. Total energy = 4600.0954 kcal/mol (4592.0067 without restraints) Performing minimization step: 616. Total energy = 4593.8926 kcal/mol (4585.8062 without restraints) Performing minimization step: 617. Total energy = 4587.7089 kcal/mol (4579.6248 without restraints) Performing minimization step: 618. Total energy = 4581.5441 kcal/mol (4573.4623 without restraints) Performing minimization step: 619. Total energy = 4575.3982 kcal/mol (4567.3187 without restraints) Performing minimization step: 620. Total energy = 4569.2709 kcal/mol (4561.1936 without restraints) Performing minimization step: 621. Total energy = 4563.1627 kcal/mol (4555.0876 without restraints) Performing minimization step: 622. Total energy = 4557.0730 kcal/mol (4549.0001 without restraints) Performing minimization step: 623. Total energy = 4551.0016 kcal/mol (4542.9310 without restraints) Performing minimization step: 624. Total energy = 4544.9483 kcal/mol (4536.8798 without restraints) Performing minimization step: 625. Total energy = 4538.9134 kcal/mol (4530.8471 without restraints) Performing minimization step: 626. Total energy = 4532.8969 kcal/mol (4524.8328 without restraints) Performing minimization step: 627. Total energy = 4526.8985 kcal/mol (4518.8365 without restraints) Performing minimization step: 628. Total energy = 4520.9179 kcal/mol (4512.8581 without restraints) Performing minimization step: 629. Total energy = 4514.9551 kcal/mol (4506.8974 without restraints) Performing minimization step: 630. Total energy = 4509.0094 kcal/mol (4500.9539 without restraints) Performing minimization step: 631. Total energy = 4503.0821 kcal/mol (4495.0287 without restraints) Performing minimization step: 632. Total energy = 4497.1726 kcal/mol (4489.1213 without restraints) Performing minimization step: 633. Total energy = 4491.2804 kcal/mol (4483.2312 without restraints) Performing minimization step: 634. Total energy = 4485.4053 kcal/mol (4477.3581 without restraints) Performing minimization step: 635. Total energy = 4479.5477 kcal/mol (4471.5026 without restraints) Performing minimization step: 636. Total energy = 4473.7077 kcal/mol (4465.6646 without restraints) Performing minimization step: 637. Total energy = 4467.8843 kcal/mol (4459.8432 without restraints) Performing minimization step: 638. Total energy = 4462.0782 kcal/mol (4454.0393 without restraints) Performing minimization step: 639. Total energy = 4456.2895 kcal/mol (4448.2527 without restraints) Performing minimization step: 640. Total energy = 4450.5175 kcal/mol (4442.4827 without restraints) Performing minimization step: 641. Total energy = 4444.7623 kcal/mol (4436.7294 without restraints) Performing minimization step: 642. Total energy = 4439.0238 kcal/mol (4430.9929 without restraints) Performing minimization step: 643. Total energy = 4433.3013 kcal/mol (4425.2725 without restraints) Performing minimization step: 644. Total energy = 4427.5960 kcal/mol (4419.5692 without restraints) Performing minimization step: 645. Total energy = 4421.9073 kcal/mol (4413.8824 without restraints) Performing minimization step: 646. Total energy = 4416.2347 kcal/mol (4408.2118 without restraints) Performing minimization step: 647. Total energy = 4410.5786 kcal/mol (4402.5577 without restraints) Performing minimization step: 648. Total energy = 4404.9389 kcal/mol (4396.9200 without restraints) Performing minimization step: 649. Total energy = 4399.3153 kcal/mol (4391.2983 without restraints) Performing minimization step: 650. Total energy = 4393.7077 kcal/mol (4385.6926 without restraints) Performing minimization step: 651. Total energy = 4388.1161 kcal/mol (4380.1030 without restraints) Performing minimization step: 652. Total energy = 4382.5408 kcal/mol (4374.5296 without restraints) Performing minimization step: 653. Total energy = 4376.9811 kcal/mol (4368.9718 without restraints) Performing minimization step: 654. Total energy = 4371.4372 kcal/mol (4363.4298 without restraints) Performing minimization step: 655. Total energy = 4365.9093 kcal/mol (4357.9038 without restraints) Performing minimization step: 656. Total energy = 4360.3967 kcal/mol (4352.3931 without restraints) Performing minimization step: 657. Total energy = 4354.8999 kcal/mol (4346.8983 without restraints) Performing minimization step: 658. Total energy = 4349.4184 kcal/mol (4341.4184 without restraints) Performing minimization step: 659. Total energy = 4343.9522 kcal/mol (4335.9542 without restraints) Performing minimization step: 660. Total energy = 4338.5017 kcal/mol (4330.5055 without restraints) Performing minimization step: 661. Total energy = 4333.0666 kcal/mol (4325.0723 without restraints) Performing minimization step: 662. Total energy = 4327.6463 kcal/mol (4319.6539 without restraints) Performing minimization step: 663. Total energy = 4322.2413 kcal/mol (4314.2507 without restraints) Performing minimization step: 664. Total energy = 4316.8515 kcal/mol (4308.8627 without restraints) Performing minimization step: 665. Total energy = 4311.4766 kcal/mol (4303.4897 without restraints) Performing minimization step: 666. Total energy = 4306.1165 kcal/mol (4298.1313 without restraints) Performing minimization step: 667. Total energy = 4300.7711 kcal/mol (4292.7877 without restraints) Performing minimization step: 668. Total energy = 4295.4405 kcal/mol (4287.4589 without restraints) Performing minimization step: 669. Total energy = 4290.1247 kcal/mol (4282.1449 without restraints) Performing minimization step: 670. Total energy = 4284.8235 kcal/mol (4276.8454 without restraints) Performing minimization step: 671. Total energy = 4279.5369 kcal/mol (4271.5608 without restraints) Performing minimization step: 672. Total energy = 4274.2648 kcal/mol (4266.2902 without restraints) Performing minimization step: 673. Total energy = 4269.0067 kcal/mol (4261.0340 without restraints) Performing minimization step: 674. Total energy = 4263.7634 kcal/mol (4255.7924 without restraints) Performing minimization step: 675. Total energy = 4258.5343 kcal/mol (4250.5651 without restraints) Performing minimization step: 676. Total energy = 4253.3195 kcal/mol (4245.3520 without restraints) Performing minimization step: 677. Total energy = 4248.1189 kcal/mol (4240.1531 without restraints) Performing minimization step: 678. Total energy = 4242.9324 kcal/mol (4234.9684 without restraints) Performing minimization step: 679. Total energy = 4237.7604 kcal/mol (4229.7980 without restraints) Performing minimization step: 680. Total energy = 4232.6016 kcal/mol (4224.6410 without restraints) Performing minimization step: 681. Total energy = 4227.4570 kcal/mol (4219.4981 without restraints) Performing minimization step: 682. Total energy = 4222.3267 kcal/mol (4214.3695 without restraints) Performing minimization step: 683. Total energy = 4217.2098 kcal/mol (4209.2542 without restraints) Performing minimization step: 684. Total energy = 4212.1067 kcal/mol (4204.1528 without restraints) Performing minimization step: 685. Total energy = 4207.0172 kcal/mol (4199.0650 without restraints) Performing minimization step: 686. Total energy = 4201.9412 kcal/mol (4193.9907 without restraints) Performing minimization step: 687. Total energy = 4196.8788 kcal/mol (4188.9299 without restraints) Performing minimization step: 688. Total energy = 4191.8299 kcal/mol (4183.8827 without restraints) Performing minimization step: 689. Total energy = 4186.7946 kcal/mol (4178.8490 without restraints) Performing minimization step: 690. Total energy = 4181.7728 kcal/mol (4173.8288 without restraints) Performing minimization step: 691. Total energy = 4176.7639 kcal/mol (4168.8216 without restraints) Performing minimization step: 692. Total energy = 4171.7685 kcal/mol (4163.8279 without restraints) Performing minimization step: 693. Total energy = 4166.7862 kcal/mol (4158.8471 without restraints) Performing minimization step: 694. Total energy = 4161.8170 kcal/mol (4153.8795 without restraints) Performing minimization step: 695. Total energy = 4156.8610 kcal/mol (4148.9250 without restraints) Performing minimization step: 696. Total energy = 4151.9178 kcal/mol (4143.9835 without restraints) Performing minimization step: 697. Total energy = 4146.9876 kcal/mol (4139.0549 without restraints) Performing minimization step: 698. Total energy = 4142.0702 kcal/mol (4134.1391 without restraints) Performing minimization step: 699. Total energy = 4137.1658 kcal/mol (4129.2362 without restraints) Performing minimization step: 700. Total energy = 4132.2741 kcal/mol (4124.3461 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 701. Total energy = 4127.3951 kcal/mol (4119.4687 without restraints) Performing minimization step: 702. Total energy = 4122.5288 kcal/mol (4114.6040 without restraints) Performing minimization step: 703. Total energy = 4117.6751 kcal/mol (4109.7519 without restraints) Performing minimization step: 704. Total energy = 4112.8342 kcal/mol (4104.9125 without restraints) Performing minimization step: 705. Total energy = 4108.0056 kcal/mol (4100.0855 without restraints) Performing minimization step: 706. Total energy = 4103.1895 kcal/mol (4095.2708 without restraints) Performing minimization step: 707. Total energy = 4098.3857 kcal/mol (4090.4686 without restraints) Performing minimization step: 708. Total energy = 4093.5942 kcal/mol (4085.6787 without restraints) Performing minimization step: 709. Total energy = 4088.8148 kcal/mol (4080.9006 without restraints) Performing minimization step: 710. Total energy = 4084.0478 kcal/mol (4076.1354 without restraints) Performing minimization step: 711. Total energy = 4079.2931 kcal/mol (4071.3821 without restraints) Performing minimization step: 712. Total energy = 4074.5505 kcal/mol (4066.6410 without restraints) Performing minimization step: 713. Total energy = 4069.8200 kcal/mol (4061.9121 without restraints) Performing minimization step: 714. Total energy = 4065.1018 kcal/mol (4057.1953 without restraints) Performing minimization step: 715. Total energy = 4060.3952 kcal/mol (4052.4902 without restraints) Performing minimization step: 716. Total energy = 4055.7008 kcal/mol (4047.7973 without restraints) Performing minimization step: 717. Total energy = 4051.0181 kcal/mol (4043.1160 without restraints) Performing minimization step: 718. Total energy = 4046.3471 kcal/mol (4038.4465 without restraints) Performing minimization step: 719. Total energy = 4041.6878 kcal/mol (4033.7886 without restraints) Performing minimization step: 720. Total energy = 4037.0403 kcal/mol (4029.1426 without restraints) Performing minimization step: 721. Total energy = 4032.4046 kcal/mol (4024.5086 without restraints) Performing minimization step: 722. Total energy = 4027.7806 kcal/mol (4019.8859 without restraints) Performing minimization step: 723. Total energy = 4023.1681 kcal/mol (4015.2749 without restraints) Performing minimization step: 724. Total energy = 4018.5671 kcal/mol (4010.6752 without restraints) Performing minimization step: 725. Total energy = 4013.9774 kcal/mol (4006.0870 without restraints) Performing minimization step: 726. Total energy = 4009.3994 kcal/mol (4001.5104 without restraints) Performing minimization step: 727. Total energy = 4004.8323 kcal/mol (3996.9448 without restraints) Performing minimization step: 728. Total energy = 4000.2764 kcal/mol (3992.3903 without restraints) Performing minimization step: 729. Total energy = 3995.7322 kcal/mol (3987.8474 without restraints) Performing minimization step: 730. Total energy = 3991.1991 kcal/mol (3983.3157 without restraints) Performing minimization step: 731. Total energy = 3986.6774 kcal/mol (3978.7954 without restraints) Performing minimization step: 732. Total energy = 3982.1666 kcal/mol (3974.2861 without restraints) Performing minimization step: 733. Total energy = 3977.6669 kcal/mol (3969.7878 without restraints) Performing minimization step: 734. Total energy = 3973.1783 kcal/mol (3965.3005 without restraints) Performing minimization step: 735. Total energy = 3968.7006 kcal/mol (3960.8242 without restraints) Performing minimization step: 736. Total energy = 3964.2338 kcal/mol (3956.3589 without restraints) Performing minimization step: 737. Total energy = 3959.7780 kcal/mol (3951.9044 without restraints) Performing minimization step: 738. Total energy = 3955.3330 kcal/mol (3947.4607 without restraints) Performing minimization step: 739. Total energy = 3950.8987 kcal/mol (3943.0277 without restraints) Performing minimization step: 740. Total energy = 3946.4751 kcal/mol (3938.6055 without restraints) Performing minimization step: 741. Total energy = 3942.0623 kcal/mol (3934.1942 without restraints) Performing minimization step: 742. Total energy = 3937.6602 kcal/mol (3929.7934 without restraints) Performing minimization step: 743. Total energy = 3933.2686 kcal/mol (3925.4033 without restraints) Performing minimization step: 744. Total energy = 3928.8878 kcal/mol (3921.0237 without restraints) Performing minimization step: 745. Total energy = 3924.5176 kcal/mol (3916.6549 without restraints) Performing minimization step: 746. Total energy = 3920.1581 kcal/mol (3912.2966 without restraints) Performing minimization step: 747. Total energy = 3915.8087 kcal/mol (3907.9485 without restraints) Performing minimization step: 748. Total energy = 3911.4696 kcal/mol (3903.6109 without restraints) Performing minimization step: 749. Total energy = 3907.1410 kcal/mol (3899.2835 without restraints) Performing minimization step: 750. Total energy = 3902.8226 kcal/mol (3894.9663 without restraints) Performing minimization step: 751. Total energy = 3898.5141 kcal/mol (3890.6592 without restraints) Performing minimization step: 752. Total energy = 3894.2162 kcal/mol (3886.3627 without restraints) Performing minimization step: 753. Total energy = 3889.9286 kcal/mol (3882.0763 without restraints) Performing minimization step: 754. Total energy = 3885.6510 kcal/mol (3877.8001 without restraints) Performing minimization step: 755. Total energy = 3881.3836 kcal/mol (3873.5339 without restraints) Performing minimization step: 756. Total energy = 3877.1262 kcal/mol (3869.2778 without restraints) Performing minimization step: 757. Total energy = 3872.8788 kcal/mol (3865.0317 without restraints) Performing minimization step: 758. Total energy = 3868.6415 kcal/mol (3860.7957 without restraints) Performing minimization step: 759. Total energy = 3864.4141 kcal/mol (3856.5697 without restraints) Performing minimization step: 760. Total energy = 3860.1966 kcal/mol (3852.3534 without restraints) Performing minimization step: 761. Total energy = 3855.9889 kcal/mol (3848.1469 without restraints) Performing minimization step: 762. Total energy = 3851.7910 kcal/mol (3843.9503 without restraints) Performing minimization step: 763. Total energy = 3847.6026 kcal/mol (3839.7631 without restraints) Performing minimization step: 764. Total energy = 3843.4242 kcal/mol (3835.5860 without restraints) Performing minimization step: 765. Total energy = 3839.2554 kcal/mol (3831.4185 without restraints) Performing minimization step: 766. Total energy = 3835.0964 kcal/mol (3827.2607 without restraints) Performing minimization step: 767. Total energy = 3830.9469 kcal/mol (3823.1125 without restraints) Performing minimization step: 768. Total energy = 3826.8070 kcal/mol (3818.9738 without restraints) Performing minimization step: 769. Total energy = 3822.6767 kcal/mol (3814.8447 without restraints) Performing minimization step: 770. Total energy = 3818.5558 kcal/mol (3810.7250 without restraints) Performing minimization step: 771. Total energy = 3814.4446 kcal/mol (3806.6151 without restraints) Performing minimization step: 772. Total energy = 3810.3426 kcal/mol (3802.5143 without restraints) Performing minimization step: 773. Total energy = 3806.2497 kcal/mol (3798.4226 without restraints) Performing minimization step: 774. Total energy = 3802.1664 kcal/mol (3794.3405 without restraints) Performing minimization step: 775. Total energy = 3798.0922 kcal/mol (3790.2675 without restraints) Performing minimization step: 776. Total energy = 3794.0277 kcal/mol (3786.2042 without restraints) Performing minimization step: 777. Total energy = 3789.9722 kcal/mol (3782.1499 without restraints) Performing minimization step: 778. Total energy = 3785.9258 kcal/mol (3778.1048 without restraints) Performing minimization step: 779. Total energy = 3781.8886 kcal/mol (3774.0687 without restraints) Performing minimization step: 780. Total energy = 3777.8606 kcal/mol (3770.0421 without restraints) Performing minimization step: 781. Total energy = 3773.8417 kcal/mol (3766.0243 without restraints) Performing minimization step: 782. Total energy = 3769.8318 kcal/mol (3762.0156 without restraints) Performing minimization step: 783. Total energy = 3765.8309 kcal/mol (3758.0158 without restraints) Performing minimization step: 784. Total energy = 3761.8389 kcal/mol (3754.0250 without restraints) Performing minimization step: 785. Total energy = 3757.8563 kcal/mol (3750.0435 without restraints) Performing minimization step: 786. Total energy = 3753.8822 kcal/mol (3746.0706 without restraints) Performing minimization step: 787. Total energy = 3749.9167 kcal/mol (3742.1062 without restraints) Performing minimization step: 788. Total energy = 3745.9601 kcal/mol (3738.1509 without restraints) Performing minimization step: 789. Total energy = 3742.0124 kcal/mol (3734.2044 without restraints) Performing minimization step: 790. Total energy = 3738.0735 kcal/mol (3730.2666 without restraints) Performing minimization step: 791. Total energy = 3734.1434 kcal/mol (3726.3378 without restraints) Performing minimization step: 792. Total energy = 3730.2220 kcal/mol (3722.4174 without restraints) Performing minimization step: 793. Total energy = 3726.3090 kcal/mol (3718.5055 without restraints) Performing minimization step: 794. Total energy = 3722.4048 kcal/mol (3714.6026 without restraints) Performing minimization step: 795. Total energy = 3718.5093 kcal/mol (3710.7081 without restraints) Performing minimization step: 796. Total energy = 3714.6222 kcal/mol (3706.8221 without restraints) Performing minimization step: 797. Total energy = 3710.7432 kcal/mol (3702.9444 without restraints) Performing minimization step: 798. Total energy = 3706.8732 kcal/mol (3699.0754 without restraints) Performing minimization step: 799. Total energy = 3703.0118 kcal/mol (3695.2151 without restraints) Performing minimization step: 800. Total energy = 3699.1588 kcal/mol (3691.3634 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 801. Total energy = 3695.3141 kcal/mol (3687.5197 without restraints) Performing minimization step: 802. Total energy = 3691.4773 kcal/mol (3683.6841 without restraints) Performing minimization step: 803. Total energy = 3687.6491 kcal/mol (3679.8570 without restraints) Performing minimization step: 804. Total energy = 3683.8292 kcal/mol (3676.0382 without restraints) Performing minimization step: 805. Total energy = 3680.0175 kcal/mol (3672.2276 without restraints) Performing minimization step: 806. Total energy = 3676.2141 kcal/mol (3668.4253 without restraints) Performing minimization step: 807. Total energy = 3672.4189 kcal/mol (3664.6312 without restraints) Performing minimization step: 808. Total energy = 3668.6321 kcal/mol (3660.8454 without restraints) Performing minimization step: 809. Total energy = 3664.8531 kcal/mol (3657.0675 without restraints) Performing minimization step: 810. Total energy = 3661.0822 kcal/mol (3653.2978 without restraints) Performing minimization step: 811. Total energy = 3657.3192 kcal/mol (3649.5358 without restraints) Performing minimization step: 812. Total energy = 3653.5643 kcal/mol (3645.7819 without restraints) Performing minimization step: 813. Total energy = 3649.8174 kcal/mol (3642.0362 without restraints) Performing minimization step: 814. Total energy = 3646.0791 kcal/mol (3638.2990 without restraints) Performing minimization step: 815. Total energy = 3642.3482 kcal/mol (3634.5692 without restraints) Performing minimization step: 816. Total energy = 3638.6252 kcal/mol (3630.8472 without restraints) Performing minimization step: 817. Total energy = 3634.9101 kcal/mol (3627.1332 without restraints) Performing minimization step: 818. Total energy = 3631.2027 kcal/mol (3623.4266 without restraints) Performing minimization step: 819. Total energy = 3627.5030 kcal/mol (3619.7283 without restraints) Performing minimization step: 820. Total energy = 3623.8113 kcal/mol (3616.0376 without restraints) Performing minimization step: 821. Total energy = 3620.1274 kcal/mol (3612.3548 without restraints) Performing minimization step: 822. Total energy = 3616.4513 kcal/mol (3608.6798 without restraints) Performing minimization step: 823. Total energy = 3612.7829 kcal/mol (3605.0124 without restraints) Performing minimization step: 824. Total energy = 3609.1221 kcal/mol (3601.3527 without restraints) Performing minimization step: 825. Total energy = 3605.4692 kcal/mol (3597.7008 without restraints) Performing minimization step: 826. Total energy = 3601.8239 kcal/mol (3594.0566 without restraints) Performing minimization step: 827. Total energy = 3598.1858 kcal/mol (3590.4195 without restraints) Performing minimization step: 828. Total energy = 3594.5557 kcal/mol (3586.7904 without restraints) Performing minimization step: 829. Total energy = 3590.9327 kcal/mol (3583.1685 without restraints) Performing minimization step: 830. Total energy = 3587.3176 kcal/mol (3579.5544 without restraints) Performing minimization step: 831. Total energy = 3583.7098 kcal/mol (3575.9477 without restraints) Performing minimization step: 832. Total energy = 3580.1094 kcal/mol (3572.3483 without restraints) Performing minimization step: 833. Total energy = 3576.5165 kcal/mol (3568.7564 without restraints) Performing minimization step: 834. Total energy = 3572.9309 kcal/mol (3565.1719 without restraints) Performing minimization step: 835. Total energy = 3569.3527 kcal/mol (3561.5947 without restraints) Performing minimization step: 836. Total energy = 3565.7819 kcal/mol (3558.0249 without restraints) Performing minimization step: 837. Total energy = 3562.2181 kcal/mol (3554.4622 without restraints) Performing minimization step: 838. Total energy = 3558.6617 kcal/mol (3550.9067 without restraints) Performing minimization step: 839. Total energy = 3555.1127 kcal/mol (3547.3588 without restraints) Performing minimization step: 840. Total energy = 3551.5707 kcal/mol (3543.8178 without restraints) Performing minimization step: 841. Total energy = 3548.0362 kcal/mol (3540.2843 without restraints) Performing minimization step: 842. Total energy = 3544.5088 kcal/mol (3536.7579 without restraints) Performing minimization step: 843. Total energy = 3540.9886 kcal/mol (3533.2387 without restraints) Performing minimization step: 844. Total energy = 3537.4755 kcal/mol (3529.7266 without restraints) Performing minimization step: 845. Total energy = 3533.9695 kcal/mol (3526.2216 without restraints) Performing minimization step: 846. Total energy = 3530.4706 kcal/mol (3522.7237 without restraints) Performing minimization step: 847. Total energy = 3526.9786 kcal/mol (3519.2328 without restraints) Performing minimization step: 848. Total energy = 3523.4937 kcal/mol (3515.7489 without restraints) Performing minimization step: 849. Total energy = 3520.0160 kcal/mol (3512.2721 without restraints) Performing minimization step: 850. Total energy = 3516.5451 kcal/mol (3508.8022 without restraints) Performing minimization step: 851. Total energy = 3513.0808 kcal/mol (3505.3389 without restraints) Performing minimization step: 852. Total energy = 3509.6239 kcal/mol (3501.8829 without restraints) Performing minimization step: 853. Total energy = 3506.1738 kcal/mol (3498.4339 without restraints) Performing minimization step: 854. Total energy = 3502.7306 kcal/mol (3494.9917 without restraints) Performing minimization step: 855. Total energy = 3499.2941 kcal/mol (3491.5561 without restraints) Performing minimization step: 856. Total energy = 3495.8646 kcal/mol (3488.1276 without restraints) Performing minimization step: 857. Total energy = 3492.4419 kcal/mol (3484.7059 without restraints) Performing minimization step: 858. Total energy = 3489.0260 kcal/mol (3481.2910 without restraints) Performing minimization step: 859. Total energy = 3485.6169 kcal/mol (3477.8828 without restraints) Performing minimization step: 860. Total energy = 3482.2144 kcal/mol (3474.4812 without restraints) Performing minimization step: 861. Total energy = 3478.8183 kcal/mol (3471.0862 without restraints) Performing minimization step: 862. Total energy = 3475.4293 kcal/mol (3467.6981 without restraints) Performing minimization step: 863. Total energy = 3472.0471 kcal/mol (3464.3169 without restraints) Performing minimization step: 864. Total energy = 3468.6715 kcal/mol (3460.9423 without restraints) Performing minimization step: 865. Total energy = 3465.3023 kcal/mol (3457.5740 without restraints) Performing minimization step: 866. Total energy = 3461.9398 kcal/mol (3454.2125 without restraints) Performing minimization step: 867. Total energy = 3458.5838 kcal/mol (3450.8574 without restraints) Performing minimization step: 868. Total energy = 3455.2345 kcal/mol (3447.5091 without restraints) Performing minimization step: 869. Total energy = 3451.8918 kcal/mol (3444.1673 without restraints) Performing minimization step: 870. Total energy = 3448.5556 kcal/mol (3440.8321 without restraints) Performing minimization step: 871. Total energy = 3445.2259 kcal/mol (3437.5033 without restraints) Performing minimization step: 872. Total energy = 3441.9026 kcal/mol (3434.1808 without restraints) Performing minimization step: 873. Total energy = 3438.5856 kcal/mol (3430.8649 without restraints) Performing minimization step: 874. Total energy = 3435.2753 kcal/mol (3427.5555 without restraints) Performing minimization step: 875. Total energy = 3431.9713 kcal/mol (3424.2524 without restraints) Performing minimization step: 876. Total energy = 3428.6737 kcal/mol (3420.9558 without restraints) Performing minimization step: 877. Total energy = 3425.3825 kcal/mol (3417.6656 without restraints) Performing minimization step: 878. Total energy = 3422.0976 kcal/mol (3414.3816 without restraints) Performing minimization step: 879. Total energy = 3418.8194 kcal/mol (3411.1043 without restraints) Performing minimization step: 880. Total energy = 3415.5472 kcal/mol (3407.8330 without restraints) Performing minimization step: 881. Total energy = 3412.2813 kcal/mol (3404.5682 without restraints) Performing minimization step: 882. Total energy = 3409.0217 kcal/mol (3401.3094 without restraints) Performing minimization step: 883. Total energy = 3405.7683 kcal/mol (3398.0569 without restraints) Performing minimization step: 884. Total energy = 3402.5206 kcal/mol (3394.8102 without restraints) Performing minimization step: 885. Total energy = 3399.2795 kcal/mol (3391.5700 without restraints) Performing minimization step: 886. Total energy = 3396.0443 kcal/mol (3388.3356 without restraints) Performing minimization step: 887. Total energy = 3392.8155 kcal/mol (3385.1079 without restraints) Performing minimization step: 888. Total energy = 3389.5930 kcal/mol (3381.8863 without restraints) Performing minimization step: 889. Total energy = 3386.3766 kcal/mol (3378.6707 without restraints) Performing minimization step: 890. Total energy = 3383.1663 kcal/mol (3375.4613 without restraints) Performing minimization step: 891. Total energy = 3379.9622 kcal/mol (3372.2582 without restraints) Performing minimization step: 892. Total energy = 3376.7645 kcal/mol (3369.0614 without restraints) Performing minimization step: 893. Total energy = 3373.5722 kcal/mol (3365.8700 without restraints) Performing minimization step: 894. Total energy = 3370.3861 kcal/mol (3362.6848 without restraints) Performing minimization step: 895. Total energy = 3367.2060 kcal/mol (3359.5056 without restraints) Performing minimization step: 896. Total energy = 3364.0319 kcal/mol (3356.3325 without restraints) Performing minimization step: 897. Total energy = 3360.8636 kcal/mol (3353.1650 without restraints) Performing minimization step: 898. Total energy = 3357.7015 kcal/mol (3350.0038 without restraints) Performing minimization step: 899. Total energy = 3354.5455 kcal/mol (3346.8488 without restraints) Performing minimization step: 900. Total energy = 3351.3952 kcal/mol (3343.6994 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 901. Total energy = 3348.2508 kcal/mol (3340.5558 without restraints) Performing minimization step: 902. Total energy = 3345.1120 kcal/mol (3337.4179 without restraints) Performing minimization step: 903. Total energy = 3341.9793 kcal/mol (3334.2861 without restraints) Performing minimization step: 904. Total energy = 3338.8529 kcal/mol (3331.1607 without restraints) Performing minimization step: 905. Total energy = 3335.7318 kcal/mol (3328.0404 without restraints) Performing minimization step: 906. Total energy = 3332.6166 kcal/mol (3324.9261 without restraints) Performing minimization step: 907. Total energy = 3329.5070 kcal/mol (3321.8174 without restraints) Performing minimization step: 908. Total energy = 3326.4033 kcal/mol (3318.7146 without restraints) Performing minimization step: 909. Total energy = 3323.3060 kcal/mol (3315.6181 without restraints) Performing minimization step: 910. Total energy = 3320.2141 kcal/mol (3312.5272 without restraints) Performing minimization step: 911. Total energy = 3317.1282 kcal/mol (3309.4421 without restraints) Performing minimization step: 912. Total energy = 3314.0476 kcal/mol (3306.3625 without restraints) Performing minimization step: 913. Total energy = 3310.9727 kcal/mol (3303.2884 without restraints) Performing minimization step: 914. Total energy = 3307.9032 kcal/mol (3300.2198 without restraints) Performing minimization step: 915. Total energy = 3304.8397 kcal/mol (3297.1572 without restraints) Performing minimization step: 916. Total energy = 3301.7819 kcal/mol (3294.1003 without restraints) Performing minimization step: 917. Total energy = 3298.7296 kcal/mol (3291.0488 without restraints) Performing minimization step: 918. Total energy = 3295.6829 kcal/mol (3288.0030 without restraints) Performing minimization step: 919. Total energy = 3292.6417 kcal/mol (3284.9627 without restraints) Performing minimization step: 920. Total energy = 3289.6060 kcal/mol (3281.9279 without restraints) Performing minimization step: 921. Total energy = 3286.5760 kcal/mol (3278.8988 without restraints) Performing minimization step: 922. Total energy = 3283.5516 kcal/mol (3275.8752 without restraints) Performing minimization step: 923. Total energy = 3280.5324 kcal/mol (3272.8569 without restraints) Performing minimization step: 924. Total energy = 3277.5191 kcal/mol (3269.8445 without restraints) Performing minimization step: 925. Total energy = 3274.5113 kcal/mol (3266.8375 without restraints) Performing minimization step: 926. Total energy = 3271.5089 kcal/mol (3263.8359 without restraints) Performing minimization step: 927. Total energy = 3268.5119 kcal/mol (3260.8398 without restraints) Performing minimization step: 928. Total energy = 3265.5206 kcal/mol (3257.8495 without restraints) Performing minimization step: 929. Total energy = 3262.5346 kcal/mol (3254.8643 without restraints) Performing minimization step: 930. Total energy = 3259.5539 kcal/mol (3251.8845 without restraints) Performing minimization step: 931. Total energy = 3256.5787 kcal/mol (3248.9101 without restraints) Performing minimization step: 932. Total energy = 3253.6089 kcal/mol (3245.9412 without restraints) Performing minimization step: 933. Total energy = 3250.6440 kcal/mol (3242.9772 without restraints) Performing minimization step: 934. Total energy = 3247.6849 kcal/mol (3240.0189 without restraints) Performing minimization step: 935. Total energy = 3244.7312 kcal/mol (3237.0661 without restraints) Performing minimization step: 936. Total energy = 3241.7830 kcal/mol (3234.1187 without restraints) Performing minimization step: 937. Total energy = 3238.8400 kcal/mol (3231.1767 without restraints) Performing minimization step: 938. Total energy = 3235.9023 kcal/mol (3228.2397 without restraints) Performing minimization step: 939. Total energy = 3232.9698 kcal/mol (3225.3081 without restraints) Performing minimization step: 940. Total energy = 3230.0426 kcal/mol (3222.3817 without restraints) Performing minimization step: 941. Total energy = 3227.1206 kcal/mol (3219.4606 without restraints) Performing minimization step: 942. Total energy = 3224.2040 kcal/mol (3216.5448 without restraints) Performing minimization step: 943. Total energy = 3221.2926 kcal/mol (3213.6343 without restraints) Performing minimization step: 944. Total energy = 3218.3866 kcal/mol (3210.7291 without restraints) Performing minimization step: 945. Total energy = 3215.4857 kcal/mol (3207.8292 without restraints) Performing minimization step: 946. Total energy = 3212.5900 kcal/mol (3204.9343 without restraints) Performing minimization step: 947. Total energy = 3209.6997 kcal/mol (3202.0448 without restraints) Performing minimization step: 948. Total energy = 3206.8136 kcal/mol (3199.1595 without restraints) Performing minimization step: 949. Total energy = 3203.9334 kcal/mol (3196.2801 without restraints) Performing minimization step: 950. Total energy = 3201.0582 kcal/mol (3193.4059 without restraints) Performing minimization step: 951. Total energy = 3198.1880 kcal/mol (3190.5364 without restraints) Performing minimization step: 952. Total energy = 3195.3236 kcal/mol (3187.6729 without restraints) Performing minimization step: 953. Total energy = 3192.4638 kcal/mol (3184.8140 without restraints) Performing minimization step: 954. Total energy = 3189.6092 kcal/mol (3181.9601 without restraints) Performing minimization step: 955. Total energy = 3186.7596 kcal/mol (3179.1114 without restraints) Performing minimization step: 956. Total energy = 3183.9150 kcal/mol (3176.2677 without restraints) Performing minimization step: 957. Total energy = 3181.0761 kcal/mol (3173.4296 without restraints) Performing minimization step: 958. Total energy = 3178.2416 kcal/mol (3170.5960 without restraints) Performing minimization step: 959. Total energy = 3175.4122 kcal/mol (3167.7674 without restraints) Performing minimization step: 960. Total energy = 3172.5879 kcal/mol (3164.9439 without restraints) Performing minimization step: 961. Total energy = 3169.7685 kcal/mol (3162.1254 without restraints) Performing minimization step: 962. Total energy = 3166.9541 kcal/mol (3159.3118 without restraints) Performing minimization step: 963. Total energy = 3164.1447 kcal/mol (3156.5032 without restraints) Performing minimization step: 964. Total energy = 3161.3403 kcal/mol (3153.6997 without restraints) Performing minimization step: 965. Total energy = 3158.5408 kcal/mol (3150.9010 without restraints) Performing minimization step: 966. Total energy = 3155.7463 kcal/mol (3148.1073 without restraints) Performing minimization step: 967. Total energy = 3152.9567 kcal/mol (3145.3186 without restraints) Performing minimization step: 968. Total energy = 3150.1720 kcal/mol (3142.5347 without restraints) Performing minimization step: 969. Total energy = 3147.3923 kcal/mol (3139.7558 without restraints) Performing minimization step: 970. Total energy = 3144.6174 kcal/mol (3136.9818 without restraints) Performing minimization step: 971. Total energy = 3141.8477 kcal/mol (3134.2129 without restraints) Performing minimization step: 972. Total energy = 3139.0826 kcal/mol (3131.4486 without restraints) Performing minimization step: 973. Total energy = 3136.3226 kcal/mol (3128.6894 without restraints) Performing minimization step: 974. Total energy = 3133.5670 kcal/mol (3125.9347 without restraints) Performing minimization step: 975. Total energy = 3130.8169 kcal/mol (3123.1854 without restraints) Performing minimization step: 976. Total energy = 3128.0711 kcal/mol (3120.4404 without restraints) Performing minimization step: 977. Total energy = 3125.3302 kcal/mol (3117.7003 without restraints) Performing minimization step: 978. Total energy = 3122.5943 kcal/mol (3114.9653 without restraints) Performing minimization step: 979. Total energy = 3119.8630 kcal/mol (3112.2348 without restraints) Performing minimization step: 980. Total energy = 3117.1365 kcal/mol (3109.5092 without restraints) Performing minimization step: 981. Total energy = 3114.4148 kcal/mol (3106.7883 without restraints) Performing minimization step: 982. Total energy = 3111.6979 kcal/mol (3104.0722 without restraints) Performing minimization step: 983. Total energy = 3108.9859 kcal/mol (3101.3611 without restraints) Performing minimization step: 984. Total energy = 3106.2785 kcal/mol (3098.6545 without restraints) Performing minimization step: 985. Total energy = 3103.5758 kcal/mol (3095.9526 without restraints) Performing minimization step: 986. Total energy = 3100.8774 kcal/mol (3093.2550 without restraints) Performing minimization step: 987. Total energy = 3098.1842 kcal/mol (3090.5626 without restraints) Performing minimization step: 988. Total energy = 3095.4955 kcal/mol (3087.8748 without restraints) Performing minimization step: 989. Total energy = 3092.8117 kcal/mol (3085.1918 without restraints) Performing minimization step: 990. Total energy = 3090.1323 kcal/mol (3082.5132 without restraints) Performing minimization step: 991. Total energy = 3087.4578 kcal/mol (3079.8395 without restraints) Performing minimization step: 992. Total energy = 3084.7878 kcal/mol (3077.1703 without restraints) Performing minimization step: 993. Total energy = 3082.1226 kcal/mol (3074.5059 without restraints) Performing minimization step: 994. Total energy = 3079.4620 kcal/mol (3071.8462 without restraints) Performing minimization step: 995. Total energy = 3076.8059 kcal/mol (3069.1908 without restraints) Performing minimization step: 996. Total energy = 3074.1546 kcal/mol (3066.5403 without restraints) Performing minimization step: 997. Total energy = 3071.5075 kcal/mol (3063.8941 without restraints) Performing minimization step: 998. Total energy = 3068.8654 kcal/mol (3061.2528 without restraints) Performing minimization step: 999. Total energy = 3066.2281 kcal/mol (3058.6163 without restraints) Performing minimization step: 1000. Total energy = 3063.5952 kcal/mol (3055.9843 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 3060.9672 kcal/mol (3053.3570 without restraints) Performing minimization step: 1002. Total energy = 3058.3434 kcal/mol (3050.7341 without restraints) Performing minimization step: 1003. Total energy = 3055.7241 kcal/mol (3048.1156 without restraints) Performing minimization step: 1004. Total energy = 3053.1094 kcal/mol (3045.5017 without restraints) Performing minimization step: 1005. Total energy = 3050.4991 kcal/mol (3042.8922 without restraints) Performing minimization step: 1006. Total energy = 3047.8935 kcal/mol (3040.2874 without restraints) Performing minimization step: 1007. Total energy = 3045.2924 kcal/mol (3037.6871 without restraints) Performing minimization step: 1008. Total energy = 3042.6956 kcal/mol (3035.0911 without restraints) Performing minimization step: 1009. Total energy = 3040.1035 kcal/mol (3032.4998 without restraints) Performing minimization step: 1010. Total energy = 3037.5158 kcal/mol (3029.9130 without restraints) Performing minimization step: 1011. Total energy = 3034.9328 kcal/mol (3027.3309 without restraints) Performing minimization step: 1012. Total energy = 3032.3546 kcal/mol (3024.7535 without restraints) Performing minimization step: 1013. Total energy = 3029.7805 kcal/mol (3022.1801 without restraints) Performing minimization step: 1014. Total energy = 3027.2105 kcal/mol (3019.6110 without restraints) Performing minimization step: 1015. Total energy = 3024.6457 kcal/mol (3017.0469 without restraints) Performing minimization step: 1016. Total energy = 3022.0848 kcal/mol (3014.4869 without restraints) Performing minimization step: 1017. Total energy = 3019.5284 kcal/mol (3011.9313 without restraints) Performing minimization step: 1018. Total energy = 3016.9764 kcal/mol (3009.3800 without restraints) Performing minimization step: 1019. Total energy = 3014.4287 kcal/mol (3006.8332 without restraints) Performing minimization step: 1020. Total energy = 3011.8855 kcal/mol (3004.2908 without restraints) Performing minimization step: 1021. Total energy = 3009.3468 kcal/mol (3001.7530 without restraints) Performing minimization step: 1022. Total energy = 3006.8124 kcal/mol (2999.2193 without restraints) Performing minimization step: 1023. Total energy = 3004.2824 kcal/mol (2996.6901 without restraints) Performing minimization step: 1024. Total energy = 3001.7569 kcal/mol (2994.1654 without restraints) Performing minimization step: 1025. Total energy = 2999.2356 kcal/mol (2991.6449 without restraints) Performing minimization step: 1026. Total energy = 2996.7186 kcal/mol (2989.1287 without restraints) Performing minimization step: 1027. Total energy = 2994.2060 kcal/mol (2986.6171 without restraints) Performing minimization step: 1028. Total energy = 2991.6978 kcal/mol (2984.1095 without restraints) Performing minimization step: 1029. Total energy = 2989.1938 kcal/mol (2981.6063 without restraints) Performing minimization step: 1030. Total energy = 2986.6941 kcal/mol (2979.1074 without restraints) Performing minimization step: 1031. Total energy = 2984.1986 kcal/mol (2976.6128 without restraints) Performing minimization step: 1032. Total energy = 2981.7073 kcal/mol (2974.1223 without restraints) Performing minimization step: 1033. Total energy = 2979.2205 kcal/mol (2971.6363 without restraints) Performing minimization step: 1034. Total energy = 2976.7383 kcal/mol (2969.1548 without restraints) Performing minimization step: 1035. Total energy = 2974.2600 kcal/mol (2966.6774 without restraints) Performing minimization step: 1036. Total energy = 2971.7862 kcal/mol (2964.2044 without restraints) Performing minimization step: 1037. Total energy = 2969.3165 kcal/mol (2961.7355 without restraints) Performing minimization step: 1038. Total energy = 2966.8510 kcal/mol (2959.2709 without restraints) Performing minimization step: 1039. Total energy = 2964.3898 kcal/mol (2956.8104 without restraints) Performing minimization step: 1040. Total energy = 2961.9328 kcal/mol (2954.3542 without restraints) Performing minimization step: 1041. Total energy = 2959.4800 kcal/mol (2951.9023 without restraints) Performing minimization step: 1042. Total energy = 2957.0317 kcal/mol (2949.4548 without restraints) Performing minimization step: 1043. Total energy = 2954.5874 kcal/mol (2947.0112 without restraints) Performing minimization step: 1044. Total energy = 2952.1472 kcal/mol (2944.5719 without restraints) Performing minimization step: 1045. Total energy = 2949.7113 kcal/mol (2942.1367 without restraints) Performing minimization step: 1046. Total energy = 2947.2795 kcal/mol (2939.7058 without restraints) Performing minimization step: 1047. Total energy = 2944.8519 kcal/mol (2937.2790 without restraints) Performing minimization step: 1048. Total energy = 2942.4292 kcal/mol (2934.8571 without restraints) Performing minimization step: 1049. Total energy = 2940.0099 kcal/mol (2932.4386 without restraints) Performing minimization step: 1050. Total energy = 2937.5948 kcal/mol (2930.0243 without restraints) Performing minimization step: 1051. Total energy = 2935.1842 kcal/mol (2927.6147 without restraints) Performing minimization step: 1052. Total energy = 2932.7773 kcal/mol (2925.2084 without restraints) Performing minimization step: 1053. Total energy = 2930.3747 kcal/mol (2922.8066 without restraints) Performing minimization step: 1054. Total energy = 2927.9761 kcal/mol (2920.4088 without restraints) Performing minimization step: 1055. Total energy = 2925.5818 kcal/mol (2918.0153 without restraints) Performing minimization step: 1056. Total energy = 2923.1914 kcal/mol (2915.6258 without restraints) Performing minimization step: 1057. Total energy = 2920.8052 kcal/mol (2913.2403 without restraints) Performing minimization step: 1058. Total energy = 2918.4230 kcal/mol (2910.8589 without restraints) Performing minimization step: 1059. Total energy = 2916.0450 kcal/mol (2908.4817 without restraints) Performing minimization step: 1060. Total energy = 2913.6710 kcal/mol (2906.1086 without restraints) Performing minimization step: 1061. Total energy = 2911.3012 kcal/mol (2903.7395 without restraints) Performing minimization step: 1062. Total energy = 2908.9353 kcal/mol (2901.3745 without restraints) Performing minimization step: 1063. Total energy = 2906.5736 kcal/mol (2899.0136 without restraints) Performing minimization step: 1064. Total energy = 2904.2160 kcal/mol (2896.6567 without restraints) Performing minimization step: 1065. Total energy = 2901.8624 kcal/mol (2894.3039 without restraints) Performing minimization step: 1066. Total energy = 2899.5124 kcal/mol (2891.9547 without restraints) Performing minimization step: 1067. Total energy = 2897.1668 kcal/mol (2889.6100 without restraints) Performing minimization step: 1068. Total energy = 2894.8253 kcal/mol (2887.2693 without restraints) Performing minimization step: 1069. Total energy = 2892.4878 kcal/mol (2884.9326 without restraints) Performing minimization step: 1070. Total energy = 2890.1543 kcal/mol (2882.5999 without restraints) Performing minimization step: 1071. Total energy = 2887.8249 kcal/mol (2880.2713 without restraints) Performing minimization step: 1072. Total energy = 2885.4996 kcal/mol (2877.9468 without restraints) Performing minimization step: 1073. Total energy = 2883.1784 kcal/mol (2875.6264 without restraints) Performing minimization step: 1074. Total energy = 2880.8610 kcal/mol (2873.3100 without restraints) Performing minimization step: 1075. Total energy = 2878.5476 kcal/mol (2870.9972 without restraints) Performing minimization step: 1076. Total energy = 2876.2383 kcal/mol (2868.6888 without restraints) Performing minimization step: 1077. Total energy = 2873.9330 kcal/mol (2866.3842 without restraints) Performing minimization step: 1078. Total energy = 2871.6317 kcal/mol (2864.0837 without restraints) Performing minimization step: 1079. Total energy = 2869.3343 kcal/mol (2861.7871 without restraints) Performing minimization step: 1080. Total energy = 2867.0408 kcal/mol (2859.4943 without restraints) Performing minimization step: 1081. Total energy = 2864.7510 kcal/mol (2857.2054 without restraints) Performing minimization step: 1082. Total energy = 2862.4652 kcal/mol (2854.9204 without restraints) Performing minimization step: 1083. Total energy = 2860.1836 kcal/mol (2852.6398 without restraints) Performing minimization step: 1084. Total energy = 2857.9057 kcal/mol (2850.3626 without restraints) Performing minimization step: 1085. Total energy = 2855.6319 kcal/mol (2848.0895 without restraints) Performing minimization step: 1086. Total energy = 2853.3617 kcal/mol (2845.8202 without restraints) Performing minimization step: 1087. Total energy = 2851.0954 kcal/mol (2843.5547 without restraints) Performing minimization step: 1088. Total energy = 2848.8330 kcal/mol (2841.2931 without restraints) Performing minimization step: 1089. Total energy = 2846.5746 kcal/mol (2839.0355 without restraints) Performing minimization step: 1090. Total energy = 2844.3200 kcal/mol (2836.7817 without restraints) Performing minimization step: 1091. Total energy = 2842.0693 kcal/mol (2834.5318 without restraints) Performing minimization step: 1092. Total energy = 2839.8227 kcal/mol (2832.2860 without restraints) Performing minimization step: 1093. Total energy = 2837.5795 kcal/mol (2830.0437 without restraints) Performing minimization step: 1094. Total energy = 2835.3404 kcal/mol (2827.8053 without restraints) Performing minimization step: 1095. Total energy = 2833.1051 kcal/mol (2825.5709 without restraints) Performing minimization step: 1096. Total energy = 2830.8739 kcal/mol (2823.3405 without restraints) Performing minimization step: 1097. Total energy = 2828.6464 kcal/mol (2821.1139 without restraints) Performing minimization step: 1098. Total energy = 2826.4225 kcal/mol (2818.8906 without restraints) Performing minimization step: 1099. Total energy = 2824.2021 kcal/mol (2816.6711 without restraints) Performing minimization step: 1100. Total energy = 2821.9860 kcal/mol (2814.4558 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 2819.7737 kcal/mol (2812.2443 without restraints) Performing minimization step: 1102. Total energy = 2817.5652 kcal/mol (2810.0366 without restraints) Performing minimization step: 1103. Total energy = 2815.3607 kcal/mol (2807.8329 without restraints) Performing minimization step: 1104. Total energy = 2813.1598 kcal/mol (2805.6328 without restraints) Performing minimization step: 1105. Total energy = 2810.9625 kcal/mol (2803.4363 without restraints) Performing minimization step: 1106. Total energy = 2808.7694 kcal/mol (2801.2440 without restraints) Performing minimization step: 1107. Total energy = 2806.5802 kcal/mol (2799.0556 without restraints) Performing minimization step: 1108. Total energy = 2804.3944 kcal/mol (2796.8706 without restraints) Performing minimization step: 1109. Total energy = 2802.2123 kcal/mol (2794.6894 without restraints) Performing minimization step: 1110. Total energy = 2800.0341 kcal/mol (2792.5119 without restraints) Performing minimization step: 1111. Total energy = 2797.8597 kcal/mol (2790.3383 without restraints) Performing minimization step: 1112. Total energy = 2795.6891 kcal/mol (2788.1686 without restraints) Performing minimization step: 1113. Total energy = 2793.5223 kcal/mol (2786.0026 without restraints) Performing minimization step: 1114. Total energy = 2791.3591 kcal/mol (2783.8402 without restraints) Performing minimization step: 1115. Total energy = 2789.1995 kcal/mol (2781.6814 without restraints) Performing minimization step: 1116. Total energy = 2787.0437 kcal/mol (2779.5264 without restraints) Performing minimization step: 1117. Total energy = 2784.8918 kcal/mol (2777.3753 without restraints) Performing minimization step: 1118. Total energy = 2782.7434 kcal/mol (2775.2279 without restraints) Performing minimization step: 1119. Total energy = 2780.5989 kcal/mol (2773.0840 without restraints) Performing minimization step: 1120. Total energy = 2778.4578 kcal/mol (2770.9438 without restraints) Performing minimization step: 1121. Total energy = 2776.3205 kcal/mol (2768.8073 without restraints) Performing minimization step: 1122. Total energy = 2774.1868 kcal/mol (2766.6744 without restraints) Performing minimization step: 1123. Total energy = 2772.0569 kcal/mol (2764.5453 without restraints) Performing minimization step: 1124. Total energy = 2769.9306 kcal/mol (2762.4198 without restraints) Performing minimization step: 1125. Total energy = 2767.8080 kcal/mol (2760.2980 without restraints) Performing minimization step: 1126. Total energy = 2765.6891 kcal/mol (2758.1799 without restraints) Performing minimization step: 1127. Total energy = 2763.5738 kcal/mol (2756.0655 without restraints) Performing minimization step: 1128. Total energy = 2761.4622 kcal/mol (2753.9546 without restraints) Performing minimization step: 1129. Total energy = 2759.3542 kcal/mol (2751.8475 without restraints) Performing minimization step: 1130. Total energy = 2757.2499 kcal/mol (2749.7440 without restraints) Performing minimization step: 1131. Total energy = 2755.1492 kcal/mol (2747.6441 without restraints) Performing minimization step: 1132. Total energy = 2753.0521 kcal/mol (2745.5478 without restraints) Performing minimization step: 1133. Total energy = 2750.9589 kcal/mol (2743.4554 without restraints) Performing minimization step: 1134. Total energy = 2748.8690 kcal/mol (2741.3663 without restraints) Performing minimization step: 1135. Total energy = 2746.7827 kcal/mol (2739.2809 without restraints) Performing minimization step: 1136. Total energy = 2744.7004 kcal/mol (2737.1993 without restraints) Performing minimization step: 1137. Total energy = 2742.6216 kcal/mol (2735.1214 without restraints) Performing minimization step: 1138. Total energy = 2740.5462 kcal/mol (2733.0468 without restraints) Performing minimization step: 1139. Total energy = 2738.4744 kcal/mol (2730.9758 without restraints) Performing minimization step: 1140. Total energy = 2736.4061 kcal/mol (2728.9083 without restraints) Performing minimization step: 1141. Total energy = 2734.3414 kcal/mol (2726.8445 without restraints) Performing minimization step: 1142. Total energy = 2732.2803 kcal/mol (2724.7842 without restraints) Performing minimization step: 1143. Total energy = 2730.2228 kcal/mol (2722.7275 without restraints) Performing minimization step: 1144. Total energy = 2728.1688 kcal/mol (2720.6743 without restraints) Performing minimization step: 1145. Total energy = 2726.1186 kcal/mol (2718.6249 without restraints) Performing minimization step: 1146. Total energy = 2724.0718 kcal/mol (2716.5789 without restraints) Performing minimization step: 1147. Total energy = 2722.0287 kcal/mol (2714.5366 without restraints) Performing minimization step: 1148. Total energy = 2719.9889 kcal/mol (2712.4976 without restraints) Performing minimization step: 1149. Total energy = 2717.9527 kcal/mol (2710.4623 without restraints) Performing minimization step: 1150. Total energy = 2715.9201 kcal/mol (2708.4307 without restraints) Performing minimization step: 1151. Total energy = 2713.8911 kcal/mol (2706.4023 without restraints) Performing minimization step: 1152. Total energy = 2711.8654 kcal/mol (2704.3775 without restraints) Performing minimization step: 1153. Total energy = 2709.8433 kcal/mol (2702.3562 without restraints) Performing minimization step: 1154. Total energy = 2707.8247 kcal/mol (2700.3384 without restraints) Performing minimization step: 1155. Total energy = 2705.8096 kcal/mol (2698.3241 without restraints) Performing minimization step: 1156. Total energy = 2703.7980 kcal/mol (2696.3133 without restraints) Performing minimization step: 1157. Total energy = 2701.7899 kcal/mol (2694.3061 without restraints) Performing minimization step: 1158. Total energy = 2699.7853 kcal/mol (2692.3022 without restraints) Performing minimization step: 1159. Total energy = 2697.7843 kcal/mol (2690.3021 without restraints) Performing minimization step: 1160. Total energy = 2695.7866 kcal/mol (2688.3052 without restraints) Performing minimization step: 1161. Total energy = 2693.7923 kcal/mol (2686.3117 without restraints) Performing minimization step: 1162. Total energy = 2691.8014 kcal/mol (2684.3216 without restraints) Performing minimization step: 1163. Total energy = 2689.8138 kcal/mol (2682.3349 without restraints) Performing minimization step: 1164. Total energy = 2687.8299 kcal/mol (2680.3518 without restraints) Performing minimization step: 1165. Total energy = 2685.8495 kcal/mol (2678.3722 without restraints) Performing minimization step: 1166. Total energy = 2683.8725 kcal/mol (2676.3961 without restraints) Performing minimization step: 1167. Total energy = 2681.8990 kcal/mol (2674.4234 without restraints) Performing minimization step: 1168. Total energy = 2679.9289 kcal/mol (2672.4541 without restraints) Performing minimization step: 1169. Total energy = 2677.9624 kcal/mol (2670.4885 without restraints) Performing minimization step: 1170. Total energy = 2675.9993 kcal/mol (2668.5262 without restraints) Performing minimization step: 1171. Total energy = 2674.0395 kcal/mol (2666.5672 without restraints) Performing minimization step: 1172. Total energy = 2672.0831 kcal/mol (2664.6116 without restraints) Performing minimization step: 1173. Total energy = 2670.1301 kcal/mol (2662.6594 without restraints) Performing minimization step: 1174. Total energy = 2668.1807 kcal/mol (2660.7108 without restraints) Performing minimization step: 1175. Total energy = 2666.2345 kcal/mol (2658.7654 without restraints) Performing minimization step: 1176. Total energy = 2664.2914 kcal/mol (2656.8233 without restraints) Performing minimization step: 1177. Total energy = 2662.3520 kcal/mol (2654.8846 without restraints) Performing minimization step: 1178. Total energy = 2660.4157 kcal/mol (2652.9490 without restraints) Performing minimization step: 1179. Total energy = 2658.4831 kcal/mol (2651.0174 without restraints) Performing minimization step: 1180. Total energy = 2656.5537 kcal/mol (2649.0889 without restraints) Performing minimization step: 1181. Total energy = 2654.6278 kcal/mol (2647.1638 without restraints) Performing minimization step: 1182. Total energy = 2652.7051 kcal/mol (2645.2419 without restraints) Performing minimization step: 1183. Total energy = 2650.7858 kcal/mol (2643.3234 without restraints) Performing minimization step: 1184. Total energy = 2648.8699 kcal/mol (2641.4084 without restraints) Performing minimization step: 1185. Total energy = 2646.9573 kcal/mol (2639.4964 without restraints) Performing minimization step: 1186. Total energy = 2645.0479 kcal/mol (2637.5881 without restraints) Performing minimization step: 1187. Total energy = 2643.1420 kcal/mol (2635.6830 without restraints) Performing minimization step: 1188. Total energy = 2641.2395 kcal/mol (2633.7812 without restraints) Performing minimization step: 1189. Total energy = 2639.3402 kcal/mol (2631.8828 without restraints) Performing minimization step: 1190. Total energy = 2637.4442 kcal/mol (2629.9875 without restraints) Performing minimization step: 1191. Total energy = 2635.5515 kcal/mol (2628.0957 without restraints) Performing minimization step: 1192. Total energy = 2633.6622 kcal/mol (2626.2073 without restraints) Performing minimization step: 1193. Total energy = 2631.7761 kcal/mol (2624.3221 without restraints) Performing minimization step: 1194. Total energy = 2629.8934 kcal/mol (2622.4402 without restraints) Performing minimization step: 1195. Total energy = 2628.0140 kcal/mol (2620.5616 without restraints) Performing minimization step: 1196. Total energy = 2626.1379 kcal/mol (2618.6863 without restraints) Performing minimization step: 1197. Total energy = 2624.2653 kcal/mol (2616.8146 without restraints) Performing minimization step: 1198. Total energy = 2622.3957 kcal/mol (2614.9458 without restraints) Performing minimization step: 1199. Total energy = 2620.5294 kcal/mol (2613.0803 without restraints) Performing minimization step: 1200. Total energy = 2618.6662 kcal/mol (2611.2179 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 2616.8063 kcal/mol (2609.3590 without restraints) Performing minimization step: 1202. Total energy = 2614.9497 kcal/mol (2607.5032 without restraints) Performing minimization step: 1203. Total energy = 2613.0965 kcal/mol (2605.6508 without restraints) Performing minimization step: 1204. Total energy = 2611.2464 kcal/mol (2603.8016 without restraints) Performing minimization step: 1205. Total energy = 2609.3996 kcal/mol (2601.9556 without restraints) Performing minimization step: 1206. Total energy = 2607.5561 kcal/mol (2600.1131 without restraints) Performing minimization step: 1207. Total energy = 2605.7159 kcal/mol (2598.2736 without restraints) Performing minimization step: 1208. Total energy = 2603.8788 kcal/mol (2596.4374 without restraints) Performing minimization step: 1209. Total energy = 2602.0450 kcal/mol (2594.6045 without restraints) Performing minimization step: 1210. Total energy = 2600.2147 kcal/mol (2592.7749 without restraints) Performing minimization step: 1211. Total energy = 2598.3874 kcal/mol (2590.9484 without restraints) Performing minimization step: 1212. Total energy = 2596.5635 kcal/mol (2589.1254 without restraints) Performing minimization step: 1213. Total energy = 2594.7424 kcal/mol (2587.3052 without restraints) Performing minimization step: 1214. Total energy = 2592.9244 kcal/mol (2585.4880 without restraints) Performing minimization step: 1215. Total energy = 2591.1100 kcal/mol (2583.6744 without restraints) Performing minimization step: 1216. Total energy = 2589.2987 kcal/mol (2581.8640 without restraints) Performing minimization step: 1217. Total energy = 2587.4907 kcal/mol (2580.0568 without restraints) Performing minimization step: 1218. Total energy = 2585.6855 kcal/mol (2578.2525 without restraints) Performing minimization step: 1219. Total energy = 2583.8840 kcal/mol (2576.4518 without restraints) Performing minimization step: 1220. Total energy = 2582.0847 kcal/mol (2574.6534 without restraints) Performing minimization step: 1221. Total energy = 2580.2890 kcal/mol (2572.8585 without restraints) Performing minimization step: 1222. Total energy = 2578.4967 kcal/mol (2571.0671 without restraints) Performing minimization step: 1223. Total energy = 2576.7073 kcal/mol (2569.2785 without restraints) Performing minimization step: 1224. Total energy = 2574.9210 kcal/mol (2567.4930 without restraints) Performing minimization step: 1225. Total energy = 2573.1377 kcal/mol (2565.7106 without restraints) Performing minimization step: 1226. Total energy = 2571.3576 kcal/mol (2563.9314 without restraints) Performing minimization step: 1227. Total energy = 2569.5808 kcal/mol (2562.1554 without restraints) Performing minimization step: 1228. Total energy = 2567.8070 kcal/mol (2560.3824 without restraints) Performing minimization step: 1229. Total energy = 2566.0363 kcal/mol (2558.6126 without restraints) Performing minimization step: 1230. Total energy = 2564.2688 kcal/mol (2556.8459 without restraints) Performing minimization step: 1231. Total energy = 2562.5043 kcal/mol (2555.0823 without restraints) Performing minimization step: 1232. Total energy = 2560.7430 kcal/mol (2553.3219 without restraints) Performing minimization step: 1233. Total energy = 2558.9848 kcal/mol (2551.5645 without restraints) Performing minimization step: 1234. Total energy = 2557.2299 kcal/mol (2549.8104 without restraints) Performing minimization step: 1235. Total energy = 2555.4778 kcal/mol (2548.0592 without restraints) Performing minimization step: 1236. Total energy = 2553.7290 kcal/mol (2546.3113 without restraints) Performing minimization step: 1237. Total energy = 2551.9831 kcal/mol (2544.5662 without restraints) Performing minimization step: 1238. Total energy = 2550.2402 kcal/mol (2542.8242 without restraints) Performing minimization step: 1239. Total energy = 2548.5005 kcal/mol (2541.0854 without restraints) Performing minimization step: 1240. Total energy = 2546.7639 kcal/mol (2539.3496 without restraints) Performing minimization step: 1241. Total energy = 2545.0302 kcal/mol (2537.6167 without restraints) Performing minimization step: 1242. Total energy = 2543.2995 kcal/mol (2535.8869 without restraints) Performing minimization step: 1243. Total energy = 2541.5718 kcal/mol (2534.1601 without restraints) Performing minimization step: 1244. Total energy = 2539.8473 kcal/mol (2532.4364 without restraints) Performing minimization step: 1245. Total energy = 2538.1262 kcal/mol (2530.7162 without restraints) Performing minimization step: 1246. Total energy = 2536.4077 kcal/mol (2528.9985 without restraints) Performing minimization step: 1247. Total energy = 2534.6923 kcal/mol (2527.2841 without restraints) Performing minimization step: 1248. Total energy = 2532.9799 kcal/mol (2525.5725 without restraints) Performing minimization step: 1249. Total energy = 2531.2704 kcal/mol (2523.8638 without restraints) Performing minimization step: 1250. Total energy = 2529.5640 kcal/mol (2522.1582 without restraints) Performing minimization step: 1251. Total energy = 2527.8600 kcal/mol (2520.4552 without restraints) Performing minimization step: 1252. Total energy = 2526.1596 kcal/mol (2518.7556 without restraints) Performing minimization step: 1253. Total energy = 2524.4618 kcal/mol (2517.0587 without restraints) Performing minimization step: 1254. Total energy = 2522.7671 kcal/mol (2515.3648 without restraints) Performing minimization step: 1255. Total energy = 2521.0755 kcal/mol (2513.6741 without restraints) Performing minimization step: 1256. Total energy = 2519.3869 kcal/mol (2511.9864 without restraints) Performing minimization step: 1257. Total energy = 2517.7014 kcal/mol (2510.3017 without restraints) Performing minimization step: 1258. Total energy = 2516.0186 kcal/mol (2508.6198 without restraints) Performing minimization step: 1259. Total energy = 2514.3389 kcal/mol (2506.9410 without restraints) Performing minimization step: 1260. Total energy = 2512.6623 kcal/mol (2505.2651 without restraints) Performing minimization step: 1261. Total energy = 2510.9887 kcal/mol (2503.5925 without restraints) Performing minimization step: 1262. Total energy = 2509.3178 kcal/mol (2501.9225 without restraints) Performing minimization step: 1263. Total energy = 2507.6499 kcal/mol (2500.2554 without restraints) Performing minimization step: 1264. Total energy = 2505.9852 kcal/mol (2498.5916 without restraints) Performing minimization step: 1265. Total energy = 2504.3231 kcal/mol (2496.9304 without restraints) Performing minimization step: 1266. Total energy = 2502.6640 kcal/mol (2495.2721 without restraints) Performing minimization step: 1267. Total energy = 2501.0078 kcal/mol (2493.6168 without restraints) Performing minimization step: 1268. Total energy = 2499.3543 kcal/mol (2491.9642 without restraints) Performing minimization step: 1269. Total energy = 2497.7039 kcal/mol (2490.3147 without restraints) Performing minimization step: 1270. Total energy = 2496.0564 kcal/mol (2488.6681 without restraints) Performing minimization step: 1271. Total energy = 2494.4119 kcal/mol (2487.0244 without restraints) Performing minimization step: 1272. Total energy = 2492.7700 kcal/mol (2485.3834 without restraints) Performing minimization step: 1273. Total energy = 2491.1312 kcal/mol (2483.7454 without restraints) Performing minimization step: 1274. Total energy = 2489.4952 kcal/mol (2482.1103 without restraints) Performing minimization step: 1275. Total energy = 2487.8621 kcal/mol (2480.4781 without restraints) Performing minimization step: 1276. Total energy = 2486.2319 kcal/mol (2478.8488 without restraints) Performing minimization step: 1277. Total energy = 2484.6046 kcal/mol (2477.2223 without restraints) Performing minimization step: 1278. Total energy = 2482.9802 kcal/mol (2475.5989 without restraints) Performing minimization step: 1279. Total energy = 2481.3589 kcal/mol (2473.9783 without restraints) Performing minimization step: 1280. Total energy = 2479.7402 kcal/mol (2472.3606 without restraints) Performing minimization step: 1281. Total energy = 2478.1244 kcal/mol (2470.7456 without restraints) Performing minimization step: 1282. Total energy = 2476.5112 kcal/mol (2469.1333 without restraints) Performing minimization step: 1283. Total energy = 2474.9007 kcal/mol (2467.5237 without restraints) Performing minimization step: 1284. Total energy = 2473.2932 kcal/mol (2465.9171 without restraints) Performing minimization step: 1285. Total energy = 2471.6886 kcal/mol (2464.3133 without restraints) Performing minimization step: 1286. Total energy = 2470.0869 kcal/mol (2462.7126 without restraints) Performing minimization step: 1287. Total energy = 2468.4879 kcal/mol (2461.1145 without restraints) Performing minimization step: 1288. Total energy = 2466.8916 kcal/mol (2459.5189 without restraints) Performing minimization step: 1289. Total energy = 2465.2983 kcal/mol (2457.9266 without restraints) Performing minimization step: 1290. Total energy = 2463.7077 kcal/mol (2456.3368 without restraints) Performing minimization step: 1291. Total energy = 2462.1196 kcal/mol (2454.7497 without restraints) Performing minimization step: 1292. Total energy = 2460.5346 kcal/mol (2453.1655 without restraints) Performing minimization step: 1293. Total energy = 2458.9525 kcal/mol (2451.5843 without restraints) Performing minimization step: 1294. Total energy = 2457.3730 kcal/mol (2450.0057 without restraints) Performing minimization step: 1295. Total energy = 2455.7962 kcal/mol (2448.4298 without restraints) Performing minimization step: 1296. Total energy = 2454.2225 kcal/mol (2446.8570 without restraints) Performing minimization step: 1297. Total energy = 2452.6513 kcal/mol (2445.2866 without restraints) Performing minimization step: 1298. Total energy = 2451.0830 kcal/mol (2443.7192 without restraints) Performing minimization step: 1299. Total energy = 2449.5172 kcal/mol (2442.1544 without restraints) Performing minimization step: 1300. Total energy = 2447.9542 kcal/mol (2440.5923 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 2446.3939 kcal/mol (2439.0328 without restraints) Performing minimization step: 1302. Total energy = 2444.8364 kcal/mol (2437.4762 without restraints) Performing minimization step: 1303. Total energy = 2443.2815 kcal/mol (2435.9222 without restraints) Performing minimization step: 1304. Total energy = 2441.7294 kcal/mol (2434.3710 without restraints) Performing minimization step: 1305. Total energy = 2440.1800 kcal/mol (2432.8225 without restraints) Performing minimization step: 1306. Total energy = 2438.6333 kcal/mol (2431.2767 without restraints) Performing minimization step: 1307. Total energy = 2437.0893 kcal/mol (2429.7336 without restraints) Performing minimization step: 1308. Total energy = 2435.5480 kcal/mol (2428.1932 without restraints) Performing minimization step: 1309. Total energy = 2434.0092 kcal/mol (2426.6552 without restraints) Performing minimization step: 1310. Total energy = 2432.4733 kcal/mol (2425.1202 without restraints) Performing minimization step: 1311. Total energy = 2430.9400 kcal/mol (2423.5878 without restraints) Performing minimization step: 1312. Total energy = 2429.4095 kcal/mol (2422.0583 without restraints) Performing minimization step: 1313. Total energy = 2427.8817 kcal/mol (2420.5313 without restraints) Performing minimization step: 1314. Total energy = 2426.3563 kcal/mol (2419.0068 without restraints) Performing minimization step: 1315. Total energy = 2424.8336 kcal/mol (2417.4850 without restraints) Performing minimization step: 1316. Total energy = 2423.3137 kcal/mol (2415.9660 without restraints) Performing minimization step: 1317. Total energy = 2421.7964 kcal/mol (2414.4496 without restraints) Performing minimization step: 1318. Total energy = 2420.2817 kcal/mol (2412.9358 without restraints) Performing minimization step: 1319. Total energy = 2418.7696 kcal/mol (2411.4246 without restraints) Performing minimization step: 1320. Total energy = 2417.2602 kcal/mol (2409.9161 without restraints) Performing minimization step: 1321. Total energy = 2415.7534 kcal/mol (2408.4102 without restraints) Performing minimization step: 1322. Total energy = 2414.2494 kcal/mol (2406.9071 without restraints) Performing minimization step: 1323. Total energy = 2412.7478 kcal/mol (2405.4063 without restraints) Performing minimization step: 1324. Total energy = 2411.2489 kcal/mol (2403.9086 without restraints) Performing minimization step: 1325. Total energy = 2409.7530 kcal/mol (2402.4134 without restraints) Performing minimization step: 1326. Total energy = 2408.2592 kcal/mol (2400.9205 without restraints) Performing minimization step: 1327. Total energy = 2406.7680 kcal/mol (2399.4302 without restraints) Performing minimization step: 1328. Total energy = 2405.2794 kcal/mol (2397.9425 without restraints) Performing minimization step: 1329. Total energy = 2403.7931 kcal/mol (2396.4571 without restraints) Performing minimization step: 1330. Total energy = 2402.3097 kcal/mol (2394.9746 without restraints) Performing minimization step: 1331. Total energy = 2400.8288 kcal/mol (2393.4946 without restraints) Performing minimization step: 1332. Total energy = 2399.3505 kcal/mol (2392.0172 without restraints) Performing minimization step: 1333. Total energy = 2397.8750 kcal/mol (2390.5426 without restraints) Performing minimization step: 1334. Total energy = 2396.4017 kcal/mol (2389.0702 without restraints) Performing minimization step: 1335. Total energy = 2394.9310 kcal/mol (2387.6005 without restraints) Performing minimization step: 1336. Total energy = 2393.4629 kcal/mol (2386.1332 without restraints) Performing minimization step: 1337. Total energy = 2391.9970 kcal/mol (2384.6683 without restraints) Performing minimization step: 1338. Total energy = 2390.5339 kcal/mol (2383.2061 without restraints) Performing minimization step: 1339. Total energy = 2389.0736 kcal/mol (2381.7467 without restraints) Performing minimization step: 1340. Total energy = 2387.6155 kcal/mol (2380.2895 without restraints) Performing minimization step: 1341. Total energy = 2386.1600 kcal/mol (2378.8349 without restraints) Performing minimization step: 1342. Total energy = 2384.7067 kcal/mol (2377.3825 without restraints) Performing minimization step: 1343. Total energy = 2383.2562 kcal/mol (2375.9329 without restraints) Performing minimization step: 1344. Total energy = 2381.8081 kcal/mol (2374.4857 without restraints) Performing minimization step: 1345. Total energy = 2380.3630 kcal/mol (2373.0415 without restraints) Performing minimization step: 1346. Total energy = 2378.9199 kcal/mol (2371.5994 without restraints) Performing minimization step: 1347. Total energy = 2377.4791 kcal/mol (2370.1594 without restraints) Performing minimization step: 1348. Total energy = 2376.0408 kcal/mol (2368.7219 without restraints) Performing minimization step: 1349. Total energy = 2374.6049 kcal/mol (2367.2871 without restraints) Performing minimization step: 1350. Total energy = 2373.1716 kcal/mol (2365.8548 without restraints) Performing minimization step: 1351. Total energy = 2371.7406 kcal/mol (2364.4246 without restraints) Performing minimization step: 1352. Total energy = 2370.3123 kcal/mol (2362.9972 without restraints) Performing minimization step: 1353. Total energy = 2368.8863 kcal/mol (2361.5722 without restraints) Performing minimization step: 1354. Total energy = 2367.4629 kcal/mol (2360.1497 without restraints) Performing minimization step: 1355. Total energy = 2366.0418 kcal/mol (2358.7295 without restraints) Performing minimization step: 1356. Total energy = 2364.6232 kcal/mol (2357.3119 without restraints) Performing minimization step: 1357. Total energy = 2363.2070 kcal/mol (2355.8966 without restraints) Performing minimization step: 1358. Total energy = 2361.7933 kcal/mol (2354.4839 without restraints) Performing minimization step: 1359. Total energy = 2360.3823 kcal/mol (2353.0737 without restraints) Performing minimization step: 1360. Total energy = 2358.9735 kcal/mol (2351.6658 without restraints) Performing minimization step: 1361. Total energy = 2357.5668 kcal/mol (2350.2599 without restraints) Performing minimization step: 1362. Total energy = 2356.1624 kcal/mol (2348.8566 without restraints) Performing minimization step: 1363. Total energy = 2354.7608 kcal/mol (2347.4559 without restraints) Performing minimization step: 1364. Total energy = 2353.3615 kcal/mol (2346.0575 without restraints) Performing minimization step: 1365. Total energy = 2351.9643 kcal/mol (2344.6612 without restraints) Performing minimization step: 1366. Total energy = 2350.5693 kcal/mol (2343.2672 without restraints) Performing minimization step: 1367. Total energy = 2349.1770 kcal/mol (2341.8758 without restraints) Performing minimization step: 1368. Total energy = 2347.7868 kcal/mol (2340.4864 without restraints) Performing minimization step: 1369. Total energy = 2346.3990 kcal/mol (2339.0996 without restraints) Performing minimization step: 1370. Total energy = 2345.0136 kcal/mol (2337.7152 without restraints) Performing minimization step: 1371. Total energy = 2343.6306 kcal/mol (2336.3331 without restraints) Performing minimization step: 1372. Total energy = 2342.2500 kcal/mol (2334.9534 without restraints) Performing minimization step: 1373. Total energy = 2340.8716 kcal/mol (2333.5759 without restraints) Performing minimization step: 1374. Total energy = 2339.4955 kcal/mol (2332.2008 without restraints) Performing minimization step: 1375. Total energy = 2338.1218 kcal/mol (2330.8281 without restraints) Performing minimization step: 1376. Total energy = 2336.7504 kcal/mol (2329.4576 without restraints) Performing minimization step: 1377. Total energy = 2335.3813 kcal/mol (2328.0893 without restraints) Performing minimization step: 1378. Total energy = 2334.0144 kcal/mol (2326.7234 without restraints) Performing minimization step: 1379. Total energy = 2332.6498 kcal/mol (2325.3598 without restraints) Performing minimization step: 1380. Total energy = 2331.2876 kcal/mol (2323.9984 without restraints) Performing minimization step: 1381. Total energy = 2329.9275 kcal/mol (2322.6393 without restraints) Performing minimization step: 1382. Total energy = 2328.5697 kcal/mol (2321.2824 without restraints) Performing minimization step: 1383. Total energy = 2327.2141 kcal/mol (2319.9277 without restraints) Performing minimization step: 1384. Total energy = 2325.8608 kcal/mol (2318.5754 without restraints) Performing minimization step: 1385. Total energy = 2324.5097 kcal/mol (2317.2252 without restraints) Performing minimization step: 1386. Total energy = 2323.1609 kcal/mol (2315.8774 without restraints) Performing minimization step: 1387. Total energy = 2321.8145 kcal/mol (2314.5319 without restraints) Performing minimization step: 1388. Total energy = 2320.4704 kcal/mol (2313.1887 without restraints) Performing minimization step: 1389. Total energy = 2319.1284 kcal/mol (2311.8477 without restraints) Performing minimization step: 1390. Total energy = 2317.7885 kcal/mol (2310.5087 without restraints) Performing minimization step: 1391. Total energy = 2316.4508 kcal/mol (2309.1719 without restraints) Performing minimization step: 1392. Total energy = 2315.1153 kcal/mol (2307.8373 without restraints) Performing minimization step: 1393. Total energy = 2313.7820 kcal/mol (2306.5051 without restraints) Performing minimization step: 1394. Total energy = 2312.4510 kcal/mol (2305.1749 without restraints) Performing minimization step: 1395. Total energy = 2311.1223 kcal/mol (2303.8472 without restraints) Performing minimization step: 1396. Total energy = 2309.7955 kcal/mol (2302.5213 without restraints) Performing minimization step: 1397. Total energy = 2308.4709 kcal/mol (2301.1977 without restraints) Performing minimization step: 1398. Total energy = 2307.1485 kcal/mol (2299.8762 without restraints) Performing minimization step: 1399. Total energy = 2305.8284 kcal/mol (2298.5571 without restraints) Performing minimization step: 1400. Total energy = 2304.5103 kcal/mol (2297.2399 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 2303.1943 kcal/mol (2295.9249 without restraints) Performing minimization step: 1402. Total energy = 2301.8805 kcal/mol (2294.6120 without restraints) Performing minimization step: 1403. Total energy = 2300.5689 kcal/mol (2293.3013 without restraints) Performing minimization step: 1404. Total energy = 2299.2591 kcal/mol (2291.9925 without restraints) Performing minimization step: 1405. Total energy = 2297.9516 kcal/mol (2290.6860 without restraints) Performing minimization step: 1406. Total energy = 2296.6463 kcal/mol (2289.3816 without restraints) Performing minimization step: 1407. Total energy = 2295.3431 kcal/mol (2288.0793 without restraints) Performing minimization step: 1408. Total energy = 2294.0422 kcal/mol (2286.7793 without restraints) Performing minimization step: 1409. Total energy = 2292.7431 kcal/mol (2285.4812 without restraints) Performing minimization step: 1410. Total energy = 2291.4462 kcal/mol (2284.1852 without restraints) Performing minimization step: 1411. Total energy = 2290.1513 kcal/mol (2282.8913 without restraints) Performing minimization step: 1412. Total energy = 2288.8582 kcal/mol (2281.5992 without restraints) Performing minimization step: 1413. Total energy = 2287.5675 kcal/mol (2280.3094 without restraints) Performing minimization step: 1414. Total energy = 2286.2788 kcal/mol (2279.0217 without restraints) Performing minimization step: 1415. Total energy = 2284.9922 kcal/mol (2277.7360 without restraints) Performing minimization step: 1416. Total energy = 2283.7076 kcal/mol (2276.4523 without restraints) Performing minimization step: 1417. Total energy = 2282.4251 kcal/mol (2275.1707 without restraints) Performing minimization step: 1418. Total energy = 2281.1446 kcal/mol (2273.8912 without restraints) Performing minimization step: 1419. Total energy = 2279.8661 kcal/mol (2272.6137 without restraints) Performing minimization step: 1420. Total energy = 2278.5897 kcal/mol (2271.3382 without restraints) Performing minimization step: 1421. Total energy = 2277.3151 kcal/mol (2270.0646 without restraints) Performing minimization step: 1422. Total energy = 2276.0427 kcal/mol (2268.7931 without restraints) Performing minimization step: 1423. Total energy = 2274.7725 kcal/mol (2267.5239 without restraints) Performing minimization step: 1424. Total energy = 2273.5045 kcal/mol (2266.2569 without restraints) Performing minimization step: 1425. Total energy = 2272.2381 kcal/mol (2264.9914 without restraints) Performing minimization step: 1426. Total energy = 2270.9737 kcal/mol (2263.7280 without restraints) Performing minimization step: 1427. Total energy = 2269.7112 kcal/mol (2262.4664 without restraints) Performing minimization step: 1428. Total energy = 2268.4507 kcal/mol (2261.2068 without restraints) Performing minimization step: 1429. Total energy = 2267.1924 kcal/mol (2259.9495 without restraints) Performing minimization step: 1430. Total energy = 2265.9362 kcal/mol (2258.6943 without restraints) Performing minimization step: 1431. Total energy = 2264.6817 kcal/mol (2257.4407 without restraints) Performing minimization step: 1432. Total energy = 2263.4290 kcal/mol (2256.1890 without restraints) Performing minimization step: 1433. Total energy = 2262.1787 kcal/mol (2254.9397 without restraints) Performing minimization step: 1434. Total energy = 2260.9298 kcal/mol (2253.6917 without restraints) Performing minimization step: 1435. Total energy = 2259.6830 kcal/mol (2252.4458 without restraints) Performing minimization step: 1436. Total energy = 2258.4386 kcal/mol (2251.2025 without restraints) Performing minimization step: 1437. Total energy = 2257.1950 kcal/mol (2249.9598 without restraints) Performing minimization step: 1438. Total energy = 2255.9539 kcal/mol (2248.7196 without restraints) Performing minimization step: 1439. Total energy = 2254.7147 kcal/mol (2247.4815 without restraints) Performing minimization step: 1440. Total energy = 2253.4778 kcal/mol (2246.2455 without restraints) Performing minimization step: 1441. Total energy = 2252.2423 kcal/mol (2245.0110 without restraints) Performing minimization step: 1442. Total energy = 2251.0087 kcal/mol (2243.7782 without restraints) Performing minimization step: 1443. Total energy = 2249.7769 kcal/mol (2242.5474 without restraints) Performing minimization step: 1444. Total energy = 2248.5470 kcal/mol (2241.3186 without restraints) Performing minimization step: 1445. Total energy = 2247.3191 kcal/mol (2240.0916 without restraints) Performing minimization step: 1446. Total energy = 2246.0925 kcal/mol (2238.8659 without restraints) Performing minimization step: 1447. Total energy = 2244.8683 kcal/mol (2237.6427 without restraints) Performing minimization step: 1448. Total energy = 2243.6457 kcal/mol (2236.4210 without restraints) Performing minimization step: 1449. Total energy = 2242.4249 kcal/mol (2235.2010 without restraints) Performing minimization step: 1450. Total energy = 2241.2060 kcal/mol (2233.9833 without restraints) Performing minimization step: 1451. Total energy = 2239.9890 kcal/mol (2232.7672 without restraints) Performing minimization step: 1452. Total energy = 2238.7738 kcal/mol (2231.5531 without restraints) Performing minimization step: 1453. Total energy = 2237.5605 kcal/mol (2230.3407 without restraints) Performing minimization step: 1454. Total energy = 2236.3490 kcal/mol (2229.1301 without restraints) Performing minimization step: 1455. Total energy = 2235.1393 kcal/mol (2227.9214 without restraints) Performing minimization step: 1456. Total energy = 2233.9313 kcal/mol (2226.7144 without restraints) Performing minimization step: 1457. Total energy = 2232.7251 kcal/mol (2225.5092 without restraints) Performing minimization step: 1458. Total energy = 2231.5210 kcal/mol (2224.3060 without restraints) Performing minimization step: 1459. Total energy = 2230.3183 kcal/mol (2223.1043 without restraints) Performing minimization step: 1460. Total energy = 2229.1173 kcal/mol (2221.9043 without restraints) Performing minimization step: 1461. Total energy = 2227.9182 kcal/mol (2220.7061 without restraints) Performing minimization step: 1462. Total energy = 2226.7209 kcal/mol (2219.5098 without restraints) Performing minimization step: 1463. Total energy = 2225.5253 kcal/mol (2218.3151 without restraints) Performing minimization step: 1464. Total energy = 2224.3314 kcal/mol (2217.1222 without restraints) Performing minimization step: 1465. Total energy = 2223.1392 kcal/mol (2215.9310 without restraints) Performing minimization step: 1466. Total energy = 2221.9488 kcal/mol (2214.7416 without restraints) Performing minimization step: 1467. Total energy = 2220.7601 kcal/mol (2213.5539 without restraints) Performing minimization step: 1468. Total energy = 2219.5733 kcal/mol (2212.3680 without restraints) Performing minimization step: 1469. Total energy = 2218.3882 kcal/mol (2211.1839 without restraints) Performing minimization step: 1470. Total energy = 2217.2046 kcal/mol (2210.0013 without restraints) Performing minimization step: 1471. Total energy = 2216.0226 kcal/mol (2208.8203 without restraints) Performing minimization step: 1472. Total energy = 2214.8424 kcal/mol (2207.6410 without restraints) Performing minimization step: 1473. Total energy = 2213.6638 kcal/mol (2206.4634 without restraints) Performing minimization step: 1474. Total energy = 2212.4868 kcal/mol (2205.2874 without restraints) Performing minimization step: 1475. Total energy = 2211.3116 kcal/mol (2204.1131 without restraints) Performing minimization step: 1476. Total energy = 2210.1380 kcal/mol (2202.9404 without restraints) Performing minimization step: 1477. Total energy = 2208.9660 kcal/mol (2201.7695 without restraints) Performing minimization step: 1478. Total energy = 2207.7956 kcal/mol (2200.6001 without restraints) Performing minimization step: 1479. Total energy = 2206.6270 kcal/mol (2199.4324 without restraints) Performing minimization step: 1480. Total energy = 2205.4599 kcal/mol (2198.2663 without restraints) Performing minimization step: 1481. Total energy = 2204.2944 kcal/mol (2197.1018 without restraints) Performing minimization step: 1482. Total energy = 2203.1306 kcal/mol (2195.9390 without restraints) Performing minimization step: 1483. Total energy = 2201.9686 kcal/mol (2194.7778 without restraints) Performing minimization step: 1484. Total energy = 2200.8079 kcal/mol (2193.6184 without restraints) Performing minimization step: 1485. Total energy = 2199.6490 kcal/mol (2192.4603 without restraints) Performing minimization step: 1486. Total energy = 2198.4918 kcal/mol (2191.3041 without restraints) Performing minimization step: 1487. Total energy = 2197.3359 kcal/mol (2190.1491 without restraints) Performing minimization step: 1488. Total energy = 2196.1816 kcal/mol (2188.9958 without restraints) Performing minimization step: 1489. Total energy = 2195.0288 kcal/mol (2187.8440 without restraints) Performing minimization step: 1490. Total energy = 2193.8779 kcal/mol (2186.6941 without restraints) Performing minimization step: 1491. Total energy = 2192.7281 kcal/mol (2185.5453 without restraints) Performing minimization step: 1492. Total energy = 2191.5801 kcal/mol (2184.3982 without restraints) Performing minimization step: 1493. Total energy = 2190.4335 kcal/mol (2183.2526 without restraints) Performing minimization step: 1494. Total energy = 2189.2885 kcal/mol (2182.1086 without restraints) Performing minimization step: 1495. Total energy = 2188.1450 kcal/mol (2180.9661 without restraints) Performing minimization step: 1496. Total energy = 2187.0030 kcal/mol (2179.8251 without restraints) Performing minimization step: 1497. Total energy = 2185.8626 kcal/mol (2178.6856 without restraints) Performing minimization step: 1498. Total energy = 2184.7236 kcal/mol (2177.5476 without restraints) Performing minimization step: 1499. Total energy = 2183.5860 kcal/mol (2176.4109 without restraints) Performing minimization step: 1500. Total energy = 2182.4500 kcal/mol (2175.2759 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 2181.3155 kcal/mol (2174.1424 without restraints) Performing minimization step: 1502. Total energy = 2180.1825 kcal/mol (2173.0104 without restraints) Performing minimization step: 1503. Total energy = 2179.0509 kcal/mol (2171.8798 without restraints) Performing minimization step: 1504. Total energy = 2177.9209 kcal/mol (2170.7508 without restraints) Performing minimization step: 1505. Total energy = 2176.7922 kcal/mol (2169.6231 without restraints) Performing minimization step: 1506. Total energy = 2175.6651 kcal/mol (2168.4969 without restraints) Performing minimization step: 1507. Total energy = 2174.5393 kcal/mol (2167.3722 without restraints) Performing minimization step: 1508. Total energy = 2173.4151 kcal/mol (2166.2490 without restraints) Performing minimization step: 1509. Total energy = 2172.2923 kcal/mol (2165.1271 without restraints) Performing minimization step: 1510. Total energy = 2171.1709 kcal/mol (2164.0067 without restraints) Performing minimization step: 1511. Total energy = 2170.0509 kcal/mol (2162.8877 without restraints) Performing minimization step: 1512. Total energy = 2168.9326 kcal/mol (2161.7707 without restraints) Performing minimization step: 1513. Total energy = 2167.8157 kcal/mol (2160.6545 without restraints) Performing minimization step: 1514. Total energy = 2166.7002 kcal/mol (2159.5399 without restraints) Performing minimization step: 1515. Total energy = 2165.5858 kcal/mol (2158.4265 without restraints) Performing minimization step: 1516. Total energy = 2164.4726 kcal/mol (2157.3143 without restraints) Performing minimization step: 1517. Total energy = 2163.3614 kcal/mol (2156.2041 without restraints) Performing minimization step: 1518. Total energy = 2162.2511 kcal/mol (2155.0948 without restraints) Performing minimization step: 1519. Total energy = 2161.1421 kcal/mol (2153.9866 without restraints) Performing minimization step: 1520. Total energy = 2160.0346 kcal/mol (2152.8802 without restraints) Performing minimization step: 1521. Total energy = 2158.9284 kcal/mol (2151.7751 without restraints) Performing minimization step: 1522. Total energy = 2157.8236 kcal/mol (2150.6712 without restraints) Performing minimization step: 1523. Total energy = 2156.7200 kcal/mol (2149.5686 without restraints) Performing minimization step: 1524. Total energy = 2155.6179 kcal/mol (2148.4674 without restraints) Performing minimization step: 1525. Total energy = 2154.5171 kcal/mol (2147.3676 without restraints) Performing minimization step: 1526. Total energy = 2153.4173 kcal/mol (2146.2689 without restraints) Performing minimization step: 1527. Total energy = 2152.3191 kcal/mol (2145.1717 without restraints) Performing minimization step: 1528. Total energy = 2151.2224 kcal/mol (2144.0760 without restraints) Performing minimization step: 1529. Total energy = 2150.1268 kcal/mol (2142.9813 without restraints) Performing minimization step: 1530. Total energy = 2149.0325 kcal/mol (2141.8880 without restraints) Performing minimization step: 1531. Total energy = 2147.9394 kcal/mol (2140.7959 without restraints) Performing minimization step: 1532. Total energy = 2146.8479 kcal/mol (2139.7054 without restraints) Performing minimization step: 1533. Total energy = 2145.7574 kcal/mol (2138.6159 without restraints) Performing minimization step: 1534. Total energy = 2144.6682 kcal/mol (2137.5276 without restraints) Performing minimization step: 1535. Total energy = 2143.5797 kcal/mol (2136.4400 without restraints) Performing minimization step: 1536. Total energy = 2142.4929 kcal/mol (2135.3543 without restraints) Performing minimization step: 1537. Total energy = 2141.4076 kcal/mol (2134.2700 without restraints) Performing minimization step: 1538. Total energy = 2140.3234 kcal/mol (2133.1868 without restraints) Performing minimization step: 1539. Total energy = 2139.2406 kcal/mol (2132.1050 without restraints) Performing minimization step: 1540. Total energy = 2138.1588 kcal/mol (2131.0242 without restraints) Performing minimization step: 1541. Total energy = 2137.0783 kcal/mol (2129.9447 without restraints) Performing minimization step: 1542. Total energy = 2135.9990 kcal/mol (2128.8664 without restraints) Performing minimization step: 1543. Total energy = 2134.9206 kcal/mol (2127.7890 without restraints) Performing minimization step: 1544. Total energy = 2133.8440 kcal/mol (2126.7133 without restraints) Performing minimization step: 1545. Total energy = 2132.7682 kcal/mol (2125.6386 without restraints) Performing minimization step: 1546. Total energy = 2131.6937 kcal/mol (2124.5650 without restraints) Performing minimization step: 1547. Total energy = 2130.6206 kcal/mol (2123.4929 without restraints) Performing minimization step: 1548. Total energy = 2129.5484 kcal/mol (2122.4217 without restraints) Performing minimization step: 1549. Total energy = 2128.4772 kcal/mol (2121.3515 without restraints) Performing minimization step: 1550. Total energy = 2127.4074 kcal/mol (2120.2826 without restraints) Performing minimization step: 1551. Total energy = 2126.3385 kcal/mol (2119.2147 without restraints) Performing minimization step: 1552. Total energy = 2125.2709 kcal/mol (2118.1482 without restraints) Performing minimization step: 1553. Total energy = 2124.2045 kcal/mol (2117.0828 without restraints) Performing minimization step: 1554. Total energy = 2123.1393 kcal/mol (2116.0186 without restraints) Performing minimization step: 1555. Total energy = 2122.0753 kcal/mol (2114.9555 without restraints) Performing minimization step: 1556. Total energy = 2121.0123 kcal/mol (2113.8935 without restraints) Performing minimization step: 1557. Total energy = 2119.9504 kcal/mol (2112.8327 without restraints) Performing minimization step: 1558. Total energy = 2118.8896 kcal/mol (2111.7728 without restraints) Performing minimization step: 1559. Total energy = 2117.8299 kcal/mol (2110.7141 without restraints) Performing minimization step: 1560. Total energy = 2116.7714 kcal/mol (2109.6566 without restraints) Performing minimization step: 1561. Total energy = 2115.7140 kcal/mol (2108.6002 without restraints) Performing minimization step: 1562. Total energy = 2114.6577 kcal/mol (2107.5449 without restraints) Performing minimization step: 1563. Total energy = 2113.6026 kcal/mol (2106.4909 without restraints) Performing minimization step: 1564. Total energy = 2112.5488 kcal/mol (2105.4379 without restraints) Performing minimization step: 1565. Total energy = 2111.4957 kcal/mol (2104.3858 without restraints) Performing minimization step: 1566. Total energy = 2110.4437 kcal/mol (2103.3348 without restraints) Performing minimization step: 1567. Total energy = 2109.3927 kcal/mol (2102.2849 without restraints) Performing minimization step: 1568. Total energy = 2108.3428 kcal/mol (2101.2360 without restraints) Performing minimization step: 1569. Total energy = 2107.2941 kcal/mol (2100.1883 without restraints) Performing minimization step: 1570. Total energy = 2106.2462 kcal/mol (2099.1413 without restraints) Performing minimization step: 1571. Total energy = 2105.1994 kcal/mol (2098.0955 without restraints) Performing minimization step: 1572. Total energy = 2104.1536 kcal/mol (2097.0507 without restraints) Performing minimization step: 1573. Total energy = 2103.1089 kcal/mol (2096.0070 without restraints) Performing minimization step: 1574. Total energy = 2102.0652 kcal/mol (2094.9643 without restraints) Performing minimization step: 1575. Total energy = 2101.0229 kcal/mol (2093.9229 without restraints) Performing minimization step: 1576. Total energy = 2099.9812 kcal/mol (2092.8823 without restraints) Performing minimization step: 1577. Total energy = 2098.9406 kcal/mol (2091.8426 without restraints) Performing minimization step: 1578. Total energy = 2097.9007 kcal/mol (2090.8037 without restraints) Performing minimization step: 1579. Total energy = 2096.8620 kcal/mol (2089.7661 without restraints) Performing minimization step: 1580. Total energy = 2095.8244 kcal/mol (2088.7294 without restraints) Performing minimization step: 1581. Total energy = 2094.7877 kcal/mol (2087.6937 without restraints) Performing minimization step: 1582. Total energy = 2093.7520 kcal/mol (2086.6590 without restraints) Performing minimization step: 1583. Total energy = 2092.7173 kcal/mol (2085.6255 without restraints) Performing minimization step: 1584. Total energy = 2091.6837 kcal/mol (2084.5927 without restraints) Performing minimization step: 1585. Total energy = 2090.6509 kcal/mol (2083.5609 without restraints) Performing minimization step: 1586. Total energy = 2089.6190 kcal/mol (2082.5299 without restraints) Performing minimization step: 1587. Total energy = 2088.5882 kcal/mol (2081.5002 without restraints) Performing minimization step: 1588. Total energy = 2087.5582 kcal/mol (2080.4712 without restraints) Performing minimization step: 1589. Total energy = 2086.5292 kcal/mol (2079.4431 without restraints) Performing minimization step: 1590. Total energy = 2085.5011 kcal/mol (2078.4160 without restraints) Performing minimization step: 1591. Total energy = 2084.4739 kcal/mol (2077.3898 without restraints) Performing minimization step: 1592. Total energy = 2083.4478 kcal/mol (2076.3647 without restraints) Performing minimization step: 1593. Total energy = 2082.4227 kcal/mol (2075.3406 without restraints) Performing minimization step: 1594. Total energy = 2081.3982 kcal/mol (2074.3171 without restraints) Performing minimization step: 1595. Total energy = 2080.3747 kcal/mol (2073.2946 without restraints) Performing minimization step: 1596. Total energy = 2079.3521 kcal/mol (2072.2730 without restraints) Performing minimization step: 1597. Total energy = 2078.3304 kcal/mol (2071.2523 without restraints) Performing minimization step: 1598. Total energy = 2077.3096 kcal/mol (2070.2325 without restraints) Performing minimization step: 1599. Total energy = 2076.2896 kcal/mol (2069.2135 without restraints) Performing minimization step: 1600. Total energy = 2075.2705 kcal/mol (2068.1954 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 2074.2521 kcal/mol (2067.1779 without restraints) Performing minimization step: 1602. Total energy = 2073.2346 kcal/mol (2066.1615 without restraints) Performing minimization step: 1603. Total energy = 2072.2182 kcal/mol (2065.1460 without restraints) Performing minimization step: 1604. Total energy = 2071.2023 kcal/mol (2064.1312 without restraints) Performing minimization step: 1605. Total energy = 2070.1876 kcal/mol (2063.1174 without restraints) Performing minimization step: 1606. Total energy = 2069.1739 kcal/mol (2062.1047 without restraints) Performing minimization step: 1607. Total energy = 2068.1608 kcal/mol (2061.0926 without restraints) Performing minimization step: 1608. Total energy = 2067.1484 kcal/mol (2060.0812 without restraints) Performing minimization step: 1609. Total energy = 2066.1370 kcal/mol (2059.0708 without restraints) Performing minimization step: 1610. Total energy = 2065.1264 kcal/mol (2058.0612 without restraints) Performing minimization step: 1611. Total energy = 2064.1167 kcal/mol (2057.0524 without restraints) Performing minimization step: 1612. Total energy = 2063.1079 kcal/mol (2056.0447 without restraints) Performing minimization step: 1613. Total energy = 2062.0998 kcal/mol (2055.0376 without restraints) Performing minimization step: 1614. Total energy = 2061.0925 kcal/mol (2054.0313 without restraints) Performing minimization step: 1615. Total energy = 2060.0860 kcal/mol (2053.0258 without restraints) Performing minimization step: 1616. Total energy = 2059.0803 kcal/mol (2052.0211 without restraints) Performing minimization step: 1617. Total energy = 2058.0755 kcal/mol (2051.0172 without restraints) Performing minimization step: 1618. Total energy = 2057.0714 kcal/mol (2050.0141 without restraints) Performing minimization step: 1619. Total energy = 2056.0678 kcal/mol (2049.0116 without restraints) Performing minimization step: 1620. Total energy = 2055.0654 kcal/mol (2048.0102 without restraints) Performing minimization step: 1621. Total energy = 2054.0637 kcal/mol (2047.0094 without restraints) Performing minimization step: 1622. Total energy = 2053.0629 kcal/mol (2046.0096 without restraints) Performing minimization step: 1623. Total energy = 2052.0627 kcal/mol (2045.0104 without restraints) Performing minimization step: 1624. Total energy = 2051.0631 kcal/mol (2044.0118 without restraints) Performing minimization step: 1625. Total energy = 2050.0648 kcal/mol (2043.0145 without restraints) Performing minimization step: 1626. Total energy = 2049.0669 kcal/mol (2042.0175 without restraints) Performing minimization step: 1627. Total energy = 2048.0698 kcal/mol (2041.0214 without restraints) Performing minimization step: 1628. Total energy = 2047.0733 kcal/mol (2040.0260 without restraints) Performing minimization step: 1629. Total energy = 2046.0776 kcal/mol (2039.0313 without restraints) Performing minimization step: 1630. Total energy = 2045.0828 kcal/mol (2038.0375 without restraints) Performing minimization step: 1631. Total energy = 2044.0889 kcal/mol (2037.0445 without restraints) Performing minimization step: 1632. Total energy = 2043.0954 kcal/mol (2036.0521 without restraints) Performing minimization step: 1633. Total energy = 2042.1027 kcal/mol (2035.0603 without restraints) Performing minimization step: 1634. Total energy = 2041.1106 kcal/mol (2034.0692 without restraints) Performing minimization step: 1635. Total energy = 2040.1189 kcal/mol (2033.0785 without restraints) Performing minimization step: 1636. Total energy = 2039.1282 kcal/mol (2032.0888 without restraints) Performing minimization step: 1637. Total energy = 2038.1384 kcal/mol (2031.1002 without restraints) Performing minimization step: 1638. Total energy = 2037.1496 kcal/mol (2030.1122 without restraints) Performing minimization step: 1639. Total energy = 2036.1609 kcal/mol (2029.1244 without restraints) Performing minimization step: 1640. Total energy = 2035.1731 kcal/mol (2028.1377 without restraints) Performing minimization step: 1641. Total energy = 2034.1861 kcal/mol (2027.1516 without restraints) Performing minimization step: 1642. Total energy = 2033.2000 kcal/mol (2026.1666 without restraints) Performing minimization step: 1643. Total energy = 2032.2144 kcal/mol (2025.1819 without restraints) Performing minimization step: 1644. Total energy = 2031.2293 kcal/mol (2024.1978 without restraints) Performing minimization step: 1645. Total energy = 2030.2449 kcal/mol (2023.2144 without restraints) Performing minimization step: 1646. Total energy = 2029.2614 kcal/mol (2022.2320 without restraints) Performing minimization step: 1647. Total energy = 2028.2784 kcal/mol (2021.2499 without restraints) Performing minimization step: 1648. Total energy = 2027.2961 kcal/mol (2020.2685 without restraints) Performing minimization step: 1649. Total energy = 2026.3144 kcal/mol (2019.2879 without restraints) Performing minimization step: 1650. Total energy = 2025.3333 kcal/mol (2018.3078 without restraints) Performing minimization step: 1651. Total energy = 2024.3530 kcal/mol (2017.3285 without restraints) Performing minimization step: 1652. Total energy = 2023.3735 kcal/mol (2016.3500 without restraints) Performing minimization step: 1653. Total energy = 2022.3942 kcal/mol (2015.3717 without restraints) Performing minimization step: 1654. Total energy = 2021.4158 kcal/mol (2014.3943 without restraints) Performing minimization step: 1655. Total energy = 2020.4380 kcal/mol (2013.4175 without restraints) Performing minimization step: 1656. Total energy = 2019.4609 kcal/mol (2012.4413 without restraints) Performing minimization step: 1657. Total energy = 2018.4844 kcal/mol (2011.4658 without restraints) Performing minimization step: 1658. Total energy = 2017.5085 kcal/mol (2010.4909 without restraints) Performing minimization step: 1659. Total energy = 2016.5332 kcal/mol (2009.5166 without restraints) Performing minimization step: 1660. Total energy = 2015.5586 kcal/mol (2008.5431 without restraints) Performing minimization step: 1661. Total energy = 2014.5845 kcal/mol (2007.5699 without restraints) Performing minimization step: 1662. Total energy = 2013.6111 kcal/mol (2006.5975 without restraints) Performing minimization step: 1663. Total energy = 2012.6383 kcal/mol (2005.6257 without restraints) Performing minimization step: 1664. Total energy = 2011.6664 kcal/mol (2004.6547 without restraints) Performing minimization step: 1665. Total energy = 2010.6948 kcal/mol (2003.6841 without restraints) Performing minimization step: 1666. Total energy = 2009.7238 kcal/mol (2002.7142 without restraints) Performing minimization step: 1667. Total energy = 2008.7537 kcal/mol (2001.7450 without restraints) Performing minimization step: 1668. Total energy = 2007.7840 kcal/mol (2000.7763 without restraints) Performing minimization step: 1669. Total energy = 2006.8148 kcal/mol (1999.8081 without restraints) Performing minimization step: 1670. Total energy = 2005.8463 kcal/mol (1998.8406 without restraints) Performing minimization step: 1671. Total energy = 2004.8785 kcal/mol (1997.8739 without restraints) Performing minimization step: 1672. Total energy = 2003.9112 kcal/mol (1996.9075 without restraints) Performing minimization step: 1673. Total energy = 2002.9445 kcal/mol (1995.9417 without restraints) Performing minimization step: 1674. Total energy = 2001.9780 kcal/mol (1994.9763 without restraints) Performing minimization step: 1675. Total energy = 2001.0124 kcal/mol (1994.0117 without restraints) Performing minimization step: 1676. Total energy = 2000.0474 kcal/mol (1993.0477 without restraints) Performing minimization step: 1677. Total energy = 1999.0830 kcal/mol (1992.0842 without restraints) Performing minimization step: 1678. Total energy = 1998.1191 kcal/mol (1991.1213 without restraints) Performing minimization step: 1679. Total energy = 1997.1558 kcal/mol (1990.1590 without restraints) Performing minimization step: 1680. Total energy = 1996.1932 kcal/mol (1989.1973 without restraints) Performing minimization step: 1681. Total energy = 1995.2311 kcal/mol (1988.2363 without restraints) Performing minimization step: 1682. Total energy = 1994.2695 kcal/mol (1987.2757 without restraints) Performing minimization step: 1683. Total energy = 1993.3084 kcal/mol (1986.3156 without restraints) Performing minimization step: 1684. Total energy = 1992.3480 kcal/mol (1985.3562 without restraints) Performing minimization step: 1685. Total energy = 1991.3881 kcal/mol (1984.3973 without restraints) Performing minimization step: 1686. Total energy = 1990.4285 kcal/mol (1983.4386 without restraints) Performing minimization step: 1687. Total energy = 1989.4696 kcal/mol (1982.4808 without restraints) Performing minimization step: 1688. Total energy = 1988.5114 kcal/mol (1981.5235 without restraints) Performing minimization step: 1689. Total energy = 1987.5535 kcal/mol (1980.5667 without restraints) Performing minimization step: 1690. Total energy = 1986.5964 kcal/mol (1979.6105 without restraints) Performing minimization step: 1691. Total energy = 1985.6398 kcal/mol (1978.6549 without restraints) Performing minimization step: 1692. Total energy = 1984.6834 kcal/mol (1977.6995 without restraints) Performing minimization step: 1693. Total energy = 1983.7276 kcal/mol (1976.7447 without restraints) Performing minimization step: 1694. Total energy = 1982.7728 kcal/mol (1975.7909 without restraints) Performing minimization step: 1695. Total energy = 1981.8183 kcal/mol (1974.8374 without restraints) Performing minimization step: 1696. Total energy = 1980.8644 kcal/mol (1973.8845 without restraints) Performing minimization step: 1697. Total energy = 1979.9109 kcal/mol (1972.9320 without restraints) Performing minimization step: 1698. Total energy = 1978.9583 kcal/mol (1971.9803 without restraints) Performing minimization step: 1699. Total energy = 1978.0059 kcal/mol (1971.0289 without restraints) Performing minimization step: 1700. Total energy = 1977.0540 kcal/mol (1970.0781 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 1976.1027 kcal/mol (1969.1278 without restraints) Performing minimization step: 1702. Total energy = 1975.1519 kcal/mol (1968.1780 without restraints) Performing minimization step: 1703. Total energy = 1974.2020 kcal/mol (1967.2292 without restraints) Performing minimization step: 1704. Total energy = 1973.2526 kcal/mol (1966.2806 without restraints) Performing minimization step: 1705. Total energy = 1972.3034 kcal/mol (1965.3324 without restraints) Performing minimization step: 1706. Total energy = 1971.3546 kcal/mol (1964.3846 without restraints) Performing minimization step: 1707. Total energy = 1970.4064 kcal/mol (1963.4374 without restraints) Performing minimization step: 1708. Total energy = 1969.4587 kcal/mol (1962.4907 without restraints) Performing minimization step: 1709. Total energy = 1968.5115 kcal/mol (1961.5444 without restraints) Performing minimization step: 1710. Total energy = 1967.5648 kcal/mol (1960.5987 without restraints) Performing minimization step: 1711. Total energy = 1966.6186 kcal/mol (1959.6535 without restraints) Performing minimization step: 1712. Total energy = 1965.6729 kcal/mol (1958.7088 without restraints) Performing minimization step: 1713. Total energy = 1964.7277 kcal/mol (1957.7646 without restraints) Performing minimization step: 1714. Total energy = 1963.7830 kcal/mol (1956.8209 without restraints) Performing minimization step: 1715. Total energy = 1962.8390 kcal/mol (1955.8779 without restraints) Performing minimization step: 1716. Total energy = 1961.8953 kcal/mol (1954.9352 without restraints) Performing minimization step: 1717. Total energy = 1960.9522 kcal/mol (1953.9931 without restraints) Performing minimization step: 1718. Total energy = 1960.0097 kcal/mol (1953.0516 without restraints) Performing minimization step: 1719. Total energy = 1959.0675 kcal/mol (1952.1104 without restraints) Performing minimization step: 1720. Total energy = 1958.1259 kcal/mol (1951.1697 without restraints) Performing minimization step: 1721. Total energy = 1957.1846 kcal/mol (1950.2295 without restraints) Performing minimization step: 1722. Total energy = 1956.2439 kcal/mol (1949.2898 without restraints) Performing minimization step: 1723. Total energy = 1955.3033 kcal/mol (1948.3502 without restraints) Performing minimization step: 1724. Total energy = 1954.3636 kcal/mol (1947.4115 without restraints) Performing minimization step: 1725. Total energy = 1953.4242 kcal/mol (1946.4730 without restraints) Performing minimization step: 1726. Total energy = 1952.4855 kcal/mol (1945.5355 without restraints) Performing minimization step: 1727. Total energy = 1951.5474 kcal/mol (1944.5982 without restraints) Performing minimization step: 1728. Total energy = 1950.6094 kcal/mol (1943.6612 without restraints) Performing minimization step: 1729. Total energy = 1949.6721 kcal/mol (1942.7249 without restraints) Performing minimization step: 1730. Total energy = 1948.7354 kcal/mol (1941.7892 without restraints) Performing minimization step: 1731. Total energy = 1947.7991 kcal/mol (1940.8539 without restraints) Performing minimization step: 1732. Total energy = 1946.8632 kcal/mol (1939.9190 without restraints) Performing minimization step: 1733. Total energy = 1945.9279 kcal/mol (1938.9847 without restraints) Performing minimization step: 1734. Total energy = 1944.9929 kcal/mol (1938.0506 without restraints) Performing minimization step: 1735. Total energy = 1944.0585 kcal/mol (1937.1172 without restraints) Performing minimization step: 1736. Total energy = 1943.1246 kcal/mol (1936.1844 without restraints) Performing minimization step: 1737. Total energy = 1942.1912 kcal/mol (1935.2520 without restraints) Performing minimization step: 1738. Total energy = 1941.2583 kcal/mol (1934.3201 without restraints) Performing minimization step: 1739. Total energy = 1940.3259 kcal/mol (1933.3886 without restraints) Performing minimization step: 1740. Total energy = 1939.3942 kcal/mol (1932.4579 without restraints) Performing minimization step: 1741. Total energy = 1938.4626 kcal/mol (1931.5274 without restraints) Performing minimization step: 1742. Total energy = 1937.5316 kcal/mol (1930.5974 without restraints) Performing minimization step: 1743. Total energy = 1936.6011 kcal/mol (1929.6678 without restraints) Performing minimization step: 1744. Total energy = 1935.6711 kcal/mol (1928.7388 without restraints) Performing minimization step: 1745. Total energy = 1934.7415 kcal/mol (1927.8102 without restraints) Performing minimization step: 1746. Total energy = 1933.8125 kcal/mol (1926.8822 without restraints) Performing minimization step: 1747. Total energy = 1932.8839 kcal/mol (1925.9546 without restraints) Performing minimization step: 1748. Total energy = 1931.9557 kcal/mol (1925.0273 without restraints) Performing minimization step: 1749. Total energy = 1931.0279 kcal/mol (1924.1006 without restraints) Performing minimization step: 1750. Total energy = 1930.1007 kcal/mol (1923.1744 without restraints) Performing minimization step: 1751. Total energy = 1929.1740 kcal/mol (1922.2487 without restraints) Performing minimization step: 1752. Total energy = 1928.2479 kcal/mol (1921.3236 without restraints) Performing minimization step: 1753. Total energy = 1927.3226 kcal/mol (1920.3993 without restraints) Performing minimization step: 1754. Total energy = 1926.3975 kcal/mol (1919.4753 without restraints) Performing minimization step: 1755. Total energy = 1925.4729 kcal/mol (1918.5515 without restraints) Performing minimization step: 1756. Total energy = 1924.5490 kcal/mol (1917.6286 without restraints) Performing minimization step: 1757. Total energy = 1923.6251 kcal/mol (1916.7058 without restraints) Performing minimization step: 1758. Total energy = 1922.7018 kcal/mol (1915.7834 without restraints) Performing minimization step: 1759. Total energy = 1921.7789 kcal/mol (1914.8615 without restraints) Performing minimization step: 1760. Total energy = 1920.8567 kcal/mol (1913.9403 without restraints) Performing minimization step: 1761. Total energy = 1919.9350 kcal/mol (1913.0196 without restraints) Performing minimization step: 1762. Total energy = 1919.0135 kcal/mol (1912.0992 without restraints) Performing minimization step: 1763. Total energy = 1918.0926 kcal/mol (1911.1792 without restraints) Performing minimization step: 1764. Total energy = 1917.1721 kcal/mol (1910.2598 without restraints) Performing minimization step: 1765. Total energy = 1916.2519 kcal/mol (1909.3406 without restraints) Performing minimization step: 1766. Total energy = 1915.3324 kcal/mol (1908.4221 without restraints) Performing minimization step: 1767. Total energy = 1914.4134 kcal/mol (1907.5040 without restraints) Performing minimization step: 1768. Total energy = 1913.4948 kcal/mol (1906.5865 without restraints) Performing minimization step: 1769. Total energy = 1912.5766 kcal/mol (1905.6692 without restraints) Performing minimization step: 1770. Total energy = 1911.6591 kcal/mol (1904.7528 without restraints) Performing minimization step: 1771. Total energy = 1910.7420 kcal/mol (1903.8366 without restraints) Performing minimization step: 1772. Total energy = 1909.8254 kcal/mol (1902.9211 without restraints) Performing minimization step: 1773. Total energy = 1908.9093 kcal/mol (1902.0060 without restraints) Performing minimization step: 1774. Total energy = 1907.9938 kcal/mol (1901.0914 without restraints) Performing minimization step: 1775. Total energy = 1907.0783 kcal/mol (1900.1770 without restraints) Performing minimization step: 1776. Total energy = 1906.1639 kcal/mol (1899.2635 without restraints) Performing minimization step: 1777. Total energy = 1905.2496 kcal/mol (1898.3502 without restraints) Performing minimization step: 1778. Total energy = 1904.3359 kcal/mol (1897.4375 without restraints) Performing minimization step: 1779. Total energy = 1903.4227 kcal/mol (1896.5253 without restraints) Performing minimization step: 1780. Total energy = 1902.5099 kcal/mol (1895.6135 without restraints) Performing minimization step: 1781. Total energy = 1901.5976 kcal/mol (1894.7023 without restraints) Performing minimization step: 1782. Total energy = 1900.6859 kcal/mol (1893.7915 without restraints) Performing minimization step: 1783. Total energy = 1899.7746 kcal/mol (1892.8812 without restraints) Performing minimization step: 1784. Total energy = 1898.8638 kcal/mol (1891.9714 without restraints) Performing minimization step: 1785. Total energy = 1897.9535 kcal/mol (1891.0621 without restraints) Performing minimization step: 1786. Total energy = 1897.0437 kcal/mol (1890.1533 without restraints) Performing minimization step: 1787. Total energy = 1896.1344 kcal/mol (1889.2450 without restraints) Performing minimization step: 1788. Total energy = 1895.2257 kcal/mol (1888.3374 without restraints) Performing minimization step: 1789. Total energy = 1894.3176 kcal/mol (1887.4302 without restraints) Performing minimization step: 1790. Total energy = 1893.4098 kcal/mol (1886.5234 without restraints) Performing minimization step: 1791. Total energy = 1892.5024 kcal/mol (1885.6171 without restraints) Performing minimization step: 1792. Total energy = 1891.5956 kcal/mol (1884.7112 without restraints) Performing minimization step: 1793. Total energy = 1890.6894 kcal/mol (1883.8061 without restraints) Performing minimization step: 1794. Total energy = 1889.7836 kcal/mol (1882.9013 without restraints) Performing minimization step: 1795. Total energy = 1888.8783 kcal/mol (1881.9970 without restraints) Performing minimization step: 1796. Total energy = 1887.9735 kcal/mol (1881.0931 without restraints) Performing minimization step: 1797. Total energy = 1887.0692 kcal/mol (1880.1899 without restraints) Performing minimization step: 1798. Total energy = 1886.1653 kcal/mol (1879.2870 without restraints) Performing minimization step: 1799. Total energy = 1885.2621 kcal/mol (1878.3848 without restraints) Performing minimization step: 1800. Total energy = 1884.3592 kcal/mol (1877.4829 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 1883.4572 kcal/mol (1876.5819 without restraints) Performing minimization step: 1802. Total energy = 1882.5551 kcal/mol (1875.6808 without restraints) Performing minimization step: 1803. Total energy = 1881.6538 kcal/mol (1874.7805 without restraints) Performing minimization step: 1804. Total energy = 1880.7532 kcal/mol (1873.8810 without restraints) Performing minimization step: 1805. Total energy = 1879.8532 kcal/mol (1872.9819 without restraints) Performing minimization step: 1806. Total energy = 1878.9534 kcal/mol (1872.0832 without restraints) Performing minimization step: 1807. Total energy = 1878.0542 kcal/mol (1871.1850 without restraints) Performing minimization step: 1808. Total energy = 1877.1555 kcal/mol (1870.2873 without restraints) Performing minimization step: 1809. Total energy = 1876.2573 kcal/mol (1869.3901 without restraints) Performing minimization step: 1810. Total energy = 1875.3597 kcal/mol (1868.4934 without restraints) Performing minimization step: 1811. Total energy = 1874.4627 kcal/mol (1867.5974 without restraints) Performing minimization step: 1812. Total energy = 1873.5661 kcal/mol (1866.7019 without restraints) Performing minimization step: 1813. Total energy = 1872.6700 kcal/mol (1865.8068 without restraints) Performing minimization step: 1814. Total energy = 1871.7747 kcal/mol (1864.9125 without restraints) Performing minimization step: 1815. Total energy = 1870.8796 kcal/mol (1864.0184 without restraints) Performing minimization step: 1816. Total energy = 1869.9851 kcal/mol (1863.1249 without restraints) Performing minimization step: 1817. Total energy = 1869.0913 kcal/mol (1862.2322 without restraints) Performing minimization step: 1818. Total energy = 1868.1981 kcal/mol (1861.3402 without restraints) Performing minimization step: 1819. Total energy = 1867.3054 kcal/mol (1860.4483 without restraints) Performing minimization step: 1820. Total energy = 1866.4131 kcal/mol (1859.5570 without restraints) Performing minimization step: 1821. Total energy = 1865.5214 kcal/mol (1858.6664 without restraints) Performing minimization step: 1822. Total energy = 1864.6302 kcal/mol (1857.7762 without restraints) Performing minimization step: 1823. Total energy = 1863.7396 kcal/mol (1856.8864 without restraints) Performing minimization step: 1824. Total energy = 1862.8493 kcal/mol (1855.9972 without restraints) Performing minimization step: 1825. Total energy = 1861.9598 kcal/mol (1855.1088 without restraints) Performing minimization step: 1826. Total energy = 1861.0708 kcal/mol (1854.2209 without restraints) Performing minimization step: 1827. Total energy = 1860.1823 kcal/mol (1853.3333 without restraints) Performing minimization step: 1828. Total energy = 1859.2943 kcal/mol (1852.4463 without restraints) Performing minimization step: 1829. Total energy = 1858.4068 kcal/mol (1851.5599 without restraints) Performing minimization step: 1830. Total energy = 1857.5201 kcal/mol (1850.6742 without restraints) Performing minimization step: 1831. Total energy = 1856.6341 kcal/mol (1849.7892 without restraints) Performing minimization step: 1832. Total energy = 1855.7484 kcal/mol (1848.9045 without restraints) Performing minimization step: 1833. Total energy = 1854.8631 kcal/mol (1848.0203 without restraints) Performing minimization step: 1834. Total energy = 1853.9785 kcal/mol (1847.1367 without restraints) Performing minimization step: 1835. Total energy = 1853.0943 kcal/mol (1846.2534 without restraints) Performing minimization step: 1836. Total energy = 1852.2107 kcal/mol (1845.3709 without restraints) Performing minimization step: 1837. Total energy = 1851.3278 kcal/mol (1844.4890 without restraints) Performing minimization step: 1838. Total energy = 1850.4454 kcal/mol (1843.6076 without restraints) Performing minimization step: 1839. Total energy = 1849.5636 kcal/mol (1842.7268 without restraints) Performing minimization step: 1840. Total energy = 1848.6824 kcal/mol (1841.8467 without restraints) Performing minimization step: 1841. Total energy = 1847.8017 kcal/mol (1840.9670 without restraints) Performing minimization step: 1842. Total energy = 1846.9216 kcal/mol (1840.0879 without restraints) Performing minimization step: 1843. Total energy = 1846.0421 kcal/mol (1839.2095 without restraints) Performing minimization step: 1844. Total energy = 1845.1632 kcal/mol (1838.3315 without restraints) Performing minimization step: 1845. Total energy = 1844.2849 kcal/mol (1837.4544 without restraints) Performing minimization step: 1846. Total energy = 1843.4073 kcal/mol (1836.5777 without restraints) Performing minimization step: 1847. Total energy = 1842.5303 kcal/mol (1835.7018 without restraints) Performing minimization step: 1848. Total energy = 1841.6538 kcal/mol (1834.8263 without restraints) Performing minimization step: 1849. Total energy = 1840.7779 kcal/mol (1833.9514 without restraints) Performing minimization step: 1850. Total energy = 1839.9025 kcal/mol (1833.0770 without restraints) Performing minimization step: 1851. Total energy = 1839.0277 kcal/mol (1832.2033 without restraints) Performing minimization step: 1852. Total energy = 1838.1535 kcal/mol (1831.3301 without restraints) Performing minimization step: 1853. Total energy = 1837.2802 kcal/mol (1830.4580 without restraints) Performing minimization step: 1854. Total energy = 1836.4074 kcal/mol (1829.5861 without restraints) Performing minimization step: 1855. Total energy = 1835.5351 kcal/mol (1828.7147 without restraints) Performing minimization step: 1856. Total energy = 1834.6633 kcal/mol (1827.8440 without restraints) Performing minimization step: 1857. Total energy = 1833.7922 kcal/mol (1826.9739 without restraints) Performing minimization step: 1858. Total energy = 1832.9217 kcal/mol (1826.1044 without restraints) Performing minimization step: 1859. Total energy = 1832.0520 kcal/mol (1825.2358 without restraints) Performing minimization step: 1860. Total energy = 1831.1827 kcal/mol (1824.3675 without restraints) Performing minimization step: 1861. Total energy = 1830.3140 kcal/mol (1823.4998 without restraints) Performing minimization step: 1862. Total energy = 1829.4457 kcal/mol (1822.6326 without restraints) Performing minimization step: 1863. Total energy = 1828.5782 kcal/mol (1821.7660 without restraints) Performing minimization step: 1864. Total energy = 1827.7113 kcal/mol (1820.9003 without restraints) Performing minimization step: 1865. Total energy = 1826.8451 kcal/mol (1820.0351 without restraints) Performing minimization step: 1866. Total energy = 1825.9796 kcal/mol (1819.1706 without restraints) Performing minimization step: 1867. Total energy = 1825.1147 kcal/mol (1818.3068 without restraints) Performing minimization step: 1868. Total energy = 1824.2504 kcal/mol (1817.4435 without restraints) Performing minimization step: 1869. Total energy = 1823.3868 kcal/mol (1816.5810 without restraints) Performing minimization step: 1870. Total energy = 1822.5239 kcal/mol (1815.7191 without restraints) Performing minimization step: 1871. Total energy = 1821.6616 kcal/mol (1814.8578 without restraints) Performing minimization step: 1872. Total energy = 1820.7999 kcal/mol (1813.9972 without restraints) Performing minimization step: 1873. Total energy = 1819.9389 kcal/mol (1813.1372 without restraints) Performing minimization step: 1874. Total energy = 1819.0786 kcal/mol (1812.2779 without restraints) Performing minimization step: 1875. Total energy = 1818.2188 kcal/mol (1811.4192 without restraints) Performing minimization step: 1876. Total energy = 1817.3598 kcal/mol (1810.5612 without restraints) Performing minimization step: 1877. Total energy = 1816.5014 kcal/mol (1809.7039 without restraints) Performing minimization step: 1878. Total energy = 1815.6437 kcal/mol (1808.8472 without restraints) Performing minimization step: 1879. Total energy = 1814.7866 kcal/mol (1807.9912 without restraints) Performing minimization step: 1880. Total energy = 1813.9302 kcal/mol (1807.1358 without restraints) Performing minimization step: 1881. Total energy = 1813.0745 kcal/mol (1806.2811 without restraints) Performing minimization step: 1882. Total energy = 1812.2197 kcal/mol (1805.4274 without restraints) Performing minimization step: 1883. Total energy = 1811.3653 kcal/mol (1804.5741 without restraints) Performing minimization step: 1884. Total energy = 1810.5116 kcal/mol (1803.7214 without restraints) Performing minimization step: 1885. Total energy = 1809.6586 kcal/mol (1802.8694 without restraints) Performing minimization step: 1886. Total energy = 1808.8063 kcal/mol (1802.0182 without restraints) Performing minimization step: 1887. Total energy = 1807.9546 kcal/mol (1801.1676 without restraints) Performing minimization step: 1888. Total energy = 1807.1037 kcal/mol (1800.3176 without restraints) Performing minimization step: 1889. Total energy = 1806.2534 kcal/mol (1799.4684 without restraints) Performing minimization step: 1890. Total energy = 1805.4036 kcal/mol (1798.6197 without restraints) Performing minimization step: 1891. Total energy = 1804.5547 kcal/mol (1797.7718 without restraints) Performing minimization step: 1892. Total energy = 1803.7066 kcal/mol (1796.9247 without restraints) Performing minimization step: 1893. Total energy = 1802.8591 kcal/mol (1796.0783 without restraints) Performing minimization step: 1894. Total energy = 1802.0123 kcal/mol (1795.2326 without restraints) Performing minimization step: 1895. Total energy = 1801.1663 kcal/mol (1794.3877 without restraints) Performing minimization step: 1896. Total energy = 1800.3209 kcal/mol (1793.5433 without restraints) Performing minimization step: 1897. Total energy = 1799.4763 kcal/mol (1792.6998 without restraints) Performing minimization step: 1898. Total energy = 1798.6321 kcal/mol (1791.8566 without restraints) Performing minimization step: 1899. Total energy = 1797.7889 kcal/mol (1791.0144 without restraints) Performing minimization step: 1900. Total energy = 1796.9464 kcal/mol (1790.1730 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 1796.1047 kcal/mol (1789.3323 without restraints) Performing minimization step: 1902. Total energy = 1795.2636 kcal/mol (1788.4924 without restraints) Performing minimization step: 1903. Total energy = 1794.4234 kcal/mol (1787.6531 without restraints) Performing minimization step: 1904. Total energy = 1793.5835 kcal/mol (1786.8144 without restraints) Performing minimization step: 1905. Total energy = 1792.7446 kcal/mol (1785.9766 without restraints) Performing minimization step: 1906. Total energy = 1791.9066 kcal/mol (1785.1395 without restraints) Performing minimization step: 1907. Total energy = 1791.0690 kcal/mol (1784.3031 without restraints) Performing minimization step: 1908. Total energy = 1790.2325 kcal/mol (1783.4678 without restraints) Performing minimization step: 1909. Total energy = 1789.3968 kcal/mol (1782.6330 without restraints) Performing minimization step: 1910. Total energy = 1788.5617 kcal/mol (1781.7990 without restraints) Performing minimization step: 1911. Total energy = 1787.7273 kcal/mol (1780.9656 without restraints) Performing minimization step: 1912. Total energy = 1786.8940 kcal/mol (1780.1334 without restraints) Performing minimization step: 1913. Total energy = 1786.0611 kcal/mol (1779.3016 without restraints) Performing minimization step: 1914. Total energy = 1785.2291 kcal/mol (1778.4706 without restraints) Performing minimization step: 1915. Total energy = 1784.3977 kcal/mol (1777.6403 without restraints) Performing minimization step: 1916. Total energy = 1783.5673 kcal/mol (1776.8110 without restraints) Performing minimization step: 1917. Total energy = 1782.7376 kcal/mol (1775.9823 without restraints) Performing minimization step: 1918. Total energy = 1781.9086 kcal/mol (1775.1543 without restraints) Performing minimization step: 1919. Total energy = 1781.0803 kcal/mol (1774.3271 without restraints) Performing minimization step: 1920. Total energy = 1780.2528 kcal/mol (1773.5007 without restraints) Performing minimization step: 1921. Total energy = 1779.4261 kcal/mol (1772.6751 without restraints) Performing minimization step: 1922. Total energy = 1778.6002 kcal/mol (1771.8503 without restraints) Performing minimization step: 1923. Total energy = 1777.7753 kcal/mol (1771.0264 without restraints) Performing minimization step: 1924. Total energy = 1776.9510 kcal/mol (1770.2032 without restraints) Performing minimization step: 1925. Total energy = 1776.1274 kcal/mol (1769.3808 without restraints) Performing minimization step: 1926. Total energy = 1775.3048 kcal/mol (1768.5593 without restraints) Performing minimization step: 1927. Total energy = 1774.4830 kcal/mol (1767.7384 without restraints) Performing minimization step: 1928. Total energy = 1773.6618 kcal/mol (1766.9184 without restraints) Performing minimization step: 1929. Total energy = 1772.8413 kcal/mol (1766.0989 without restraints) Performing minimization step: 1930. Total energy = 1772.0217 kcal/mol (1765.2804 without restraints) Performing minimization step: 1931. Total energy = 1771.2031 kcal/mol (1764.4628 without restraints) Performing minimization step: 1932. Total energy = 1770.3852 kcal/mol (1763.6462 without restraints) Performing minimization step: 1933. Total energy = 1769.5682 kcal/mol (1762.8302 without restraints) Performing minimization step: 1934. Total energy = 1768.7519 kcal/mol (1762.0150 without restraints) Performing minimization step: 1935. Total energy = 1767.9367 kcal/mol (1761.2008 without restraints) Performing minimization step: 1936. Total energy = 1767.1220 kcal/mol (1760.3872 without restraints) Performing minimization step: 1937. Total energy = 1766.3082 kcal/mol (1759.5745 without restraints) Performing minimization step: 1938. Total energy = 1765.4952 kcal/mol (1758.7626 without restraints) Performing minimization step: 1939. Total energy = 1764.6831 kcal/mol (1757.9515 without restraints) Performing minimization step: 1940. Total energy = 1763.8717 kcal/mol (1757.1413 without restraints) Performing minimization step: 1941. Total energy = 1763.0612 kcal/mol (1756.3319 without restraints) Performing minimization step: 1942. Total energy = 1762.2515 kcal/mol (1755.5233 without restraints) Performing minimization step: 1943. Total energy = 1761.4427 kcal/mol (1754.7155 without restraints) Performing minimization step: 1944. Total energy = 1760.6347 kcal/mol (1753.9087 without restraints) Performing minimization step: 1945. Total energy = 1759.8276 kcal/mol (1753.1026 without restraints) Performing minimization step: 1946. Total energy = 1759.0213 kcal/mol (1752.2974 without restraints) Performing minimization step: 1947. Total energy = 1758.2158 kcal/mol (1751.4930 without restraints) Performing minimization step: 1948. Total energy = 1757.4113 kcal/mol (1750.6896 without restraints) Performing minimization step: 1949. Total energy = 1756.6076 kcal/mol (1749.8870 without restraints) Performing minimization step: 1950. Total energy = 1755.8047 kcal/mol (1749.0852 without restraints) Performing minimization step: 1951. Total energy = 1755.0027 kcal/mol (1748.2843 without restraints) Performing minimization step: 1952. Total energy = 1754.2016 kcal/mol (1747.4843 without restraints) Performing minimization step: 1953. Total energy = 1753.4013 kcal/mol (1746.6851 without restraints) Performing minimization step: 1954. Total energy = 1752.6019 kcal/mol (1745.8868 without restraints) Performing minimization step: 1955. Total energy = 1751.8036 kcal/mol (1745.0896 without restraints) Performing minimization step: 1956. Total energy = 1751.0060 kcal/mol (1744.2932 without restraints) Performing minimization step: 1957. Total energy = 1750.2093 kcal/mol (1743.4975 without restraints) Performing minimization step: 1958. Total energy = 1749.4135 kcal/mol (1742.7028 without restraints) Performing minimization step: 1959. Total energy = 1748.6185 kcal/mol (1741.9089 without restraints) Performing minimization step: 1960. Total energy = 1747.8244 kcal/mol (1741.1159 without restraints) Performing minimization step: 1961. Total energy = 1747.0312 kcal/mol (1740.3238 without restraints) Performing minimization step: 1962. Total energy = 1746.2388 kcal/mol (1739.5326 without restraints) Performing minimization step: 1963. Total energy = 1745.4473 kcal/mol (1738.7421 without restraints) Performing minimization step: 1964. Total energy = 1744.6567 kcal/mol (1737.9527 without restraints) Performing minimization step: 1965. Total energy = 1743.8673 kcal/mol (1737.1644 without restraints) Performing minimization step: 1966. Total energy = 1743.0788 kcal/mol (1736.3769 without restraints) Performing minimization step: 1967. Total energy = 1742.2910 kcal/mol (1735.5903 without restraints) Performing minimization step: 1968. Total energy = 1741.5040 kcal/mol (1734.8044 without restraints) Performing minimization step: 1969. Total energy = 1740.7181 kcal/mol (1734.0197 without restraints) Performing minimization step: 1970. Total energy = 1739.9331 kcal/mol (1733.2357 without restraints) Performing minimization step: 1971. Total energy = 1739.1489 kcal/mol (1732.4526 without restraints) Performing minimization step: 1972. Total energy = 1738.3656 kcal/mol (1731.6705 without restraints) Performing minimization step: 1973. Total energy = 1737.5836 kcal/mol (1730.8896 without restraints) Performing minimization step: 1974. Total energy = 1736.8022 kcal/mol (1730.1093 without restraints) Performing minimization step: 1975. Total energy = 1736.0218 kcal/mol (1729.3300 without restraints) Performing minimization step: 1976. Total energy = 1735.2423 kcal/mol (1728.5516 without restraints) Performing minimization step: 1977. Total energy = 1734.4637 kcal/mol (1727.7741 without restraints) Performing minimization step: 1978. Total energy = 1733.6860 kcal/mol (1726.9976 without restraints) Performing minimization step: 1979. Total energy = 1732.9094 kcal/mol (1726.2222 without restraints) Performing minimization step: 1980. Total energy = 1732.1337 kcal/mol (1725.4476 without restraints) Performing minimization step: 1981. Total energy = 1731.3589 kcal/mol (1724.6739 without restraints) Performing minimization step: 1982. Total energy = 1730.5850 kcal/mol (1723.9011 without restraints) Performing minimization step: 1983. Total energy = 1729.8120 kcal/mol (1723.1293 without restraints) Performing minimization step: 1984. Total energy = 1729.0401 kcal/mol (1722.3584 without restraints) Performing minimization step: 1985. Total energy = 1728.2690 kcal/mol (1721.5885 without restraints) Performing minimization step: 1986. Total energy = 1727.4988 kcal/mol (1720.8195 without restraints) Performing minimization step: 1987. Total energy = 1726.7297 kcal/mol (1720.0514 without restraints) Performing minimization step: 1988. Total energy = 1725.9615 kcal/mol (1719.2844 without restraints) Performing minimization step: 1989. Total energy = 1725.1943 kcal/mol (1718.5183 without restraints) Performing minimization step: 1990. Total energy = 1724.4281 kcal/mol (1717.7532 without restraints) Performing minimization step: 1991. Total energy = 1723.6628 kcal/mol (1716.9891 without restraints) Performing minimization step: 1992. Total energy = 1722.8986 kcal/mol (1716.2261 without restraints) Performing minimization step: 1993. Total energy = 1722.1354 kcal/mol (1715.4639 without restraints) Performing minimization step: 1994. Total energy = 1721.3729 kcal/mol (1714.7026 without restraints) Performing minimization step: 1995. Total energy = 1720.6115 kcal/mol (1713.9424 without restraints) Performing minimization step: 1996. Total energy = 1719.8511 kcal/mol (1713.1831 without restraints) Performing minimization step: 1997. Total energy = 1719.0916 kcal/mol (1712.4247 without restraints) Performing minimization step: 1998. Total energy = 1718.3331 kcal/mol (1711.6674 without restraints) Performing minimization step: 1999. Total energy = 1717.5757 kcal/mol (1710.9111 without restraints) Performing minimization step: 2000. Total energy = 1716.8192 kcal/mol (1710.1558 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 1716.0638 kcal/mol (1709.4015 without restraints) Performing minimization step: 2002. Total energy = 1715.3093 kcal/mol (1708.6482 without restraints) Performing minimization step: 2003. Total energy = 1714.5559 kcal/mol (1707.8959 without restraints) Performing minimization step: 2004. Total energy = 1713.8035 kcal/mol (1707.1447 without restraints) Performing minimization step: 2005. Total energy = 1713.0520 kcal/mol (1706.3943 without restraints) Performing minimization step: 2006. Total energy = 1712.3016 kcal/mol (1705.6450 without restraints) Performing minimization step: 2007. Total energy = 1711.5521 kcal/mol (1704.8967 without restraints) Performing minimization step: 2008. Total energy = 1710.8036 kcal/mol (1704.1494 without restraints) Performing minimization step: 2009. Total energy = 1710.0562 kcal/mol (1703.4032 without restraints) Performing minimization step: 2010. Total energy = 1709.3100 kcal/mol (1702.6581 without restraints) Performing minimization step: 2011. Total energy = 1708.5646 kcal/mol (1701.9139 without restraints) Performing minimization step: 2012. Total energy = 1707.8202 kcal/mol (1701.1707 without restraints) Performing minimization step: 2013. Total energy = 1707.0769 kcal/mol (1700.4285 without restraints) Performing minimization step: 2014. Total energy = 1706.3346 kcal/mol (1699.6873 without restraints) Performing minimization step: 2015. Total energy = 1705.5935 kcal/mol (1698.9474 without restraints) Performing minimization step: 2016. Total energy = 1704.8533 kcal/mol (1698.2084 without restraints) Performing minimization step: 2017. Total energy = 1704.1141 kcal/mol (1697.4703 without restraints) Performing minimization step: 2018. Total energy = 1703.3762 kcal/mol (1696.7336 without restraints) Performing minimization step: 2019. Total energy = 1702.6391 kcal/mol (1695.9976 without restraints) Performing minimization step: 2020. Total energy = 1701.9029 kcal/mol (1695.2627 without restraints) Performing minimization step: 2021. Total energy = 1701.1678 kcal/mol (1694.5287 without restraints) Performing minimization step: 2022. Total energy = 1700.4340 kcal/mol (1693.7961 without restraints) Performing minimization step: 2023. Total energy = 1699.7010 kcal/mol (1693.0643 without restraints) Performing minimization step: 2024. Total energy = 1698.9690 kcal/mol (1692.3335 without restraints) Performing minimization step: 2025. Total energy = 1698.2381 kcal/mol (1691.6037 without restraints) Performing minimization step: 2026. Total energy = 1697.5083 kcal/mol (1690.8750 without restraints) Performing minimization step: 2027. Total energy = 1696.7794 kcal/mol (1690.1474 without restraints) Performing minimization step: 2028. Total energy = 1696.0517 kcal/mol (1689.4208 without restraints) Performing minimization step: 2029. Total energy = 1695.3250 kcal/mol (1688.6953 without restraints) Performing minimization step: 2030. Total energy = 1694.5993 kcal/mol (1687.9708 without restraints) Performing minimization step: 2031. Total energy = 1693.8749 kcal/mol (1687.2477 without restraints) Performing minimization step: 2032. Total energy = 1693.1515 kcal/mol (1686.5254 without restraints) Performing minimization step: 2033. Total energy = 1692.4292 kcal/mol (1685.8042 without restraints) Performing minimization step: 2034. Total energy = 1691.7078 kcal/mol (1685.0840 without restraints) Performing minimization step: 2035. Total energy = 1690.9875 kcal/mol (1684.3649 without restraints) Performing minimization step: 2036. Total energy = 1690.2685 kcal/mol (1683.6471 without restraints) Performing minimization step: 2037. Total energy = 1689.5503 kcal/mol (1682.9301 without restraints) Performing minimization step: 2038. Total energy = 1688.8333 kcal/mol (1682.2142 without restraints) Performing minimization step: 2039. Total energy = 1688.1172 kcal/mol (1681.4994 without restraints) Performing minimization step: 2040. Total energy = 1687.4023 kcal/mol (1680.7858 without restraints) Performing minimization step: 2041. Total energy = 1686.6886 kcal/mol (1680.0731 without restraints) Performing minimization step: 2042. Total energy = 1685.9758 kcal/mol (1679.3615 without restraints) Performing minimization step: 2043. Total energy = 1685.2641 kcal/mol (1678.6510 without restraints) Performing minimization step: 2044. Total energy = 1684.5532 kcal/mol (1677.9413 without restraints) Performing minimization step: 2045. Total energy = 1683.8437 kcal/mol (1677.2330 without restraints) Performing minimization step: 2046. Total energy = 1683.1353 kcal/mol (1676.5260 without restraints) Performing minimization step: 2047. Total energy = 1682.4279 kcal/mol (1675.8197 without restraints) Performing minimization step: 2048. Total energy = 1681.7217 kcal/mol (1675.1146 without restraints) Performing minimization step: 2049. Total energy = 1681.0161 kcal/mol (1674.4103 without restraints) Performing minimization step: 2050. Total energy = 1680.3125 kcal/mol (1673.7078 without restraints) Performing minimization step: 2051. Total energy = 1679.6095 kcal/mol (1673.0060 without restraints) Performing minimization step: 2052. Total energy = 1678.9076 kcal/mol (1672.3054 without restraints) Performing minimization step: 2053. Total energy = 1678.2069 kcal/mol (1671.6058 without restraints) Performing minimization step: 2054. Total energy = 1677.5072 kcal/mol (1670.9074 without restraints) Performing minimization step: 2055. Total energy = 1676.8087 kcal/mol (1670.2100 without restraints) Performing minimization step: 2056. Total energy = 1676.1114 kcal/mol (1669.5140 without restraints) Performing minimization step: 2057. Total energy = 1675.4151 kcal/mol (1668.8189 without restraints) Performing minimization step: 2058. Total energy = 1674.7198 kcal/mol (1668.1248 without restraints) Performing minimization step: 2059. Total energy = 1674.0261 kcal/mol (1667.4323 without restraints) Performing minimization step: 2060. Total energy = 1673.3331 kcal/mol (1666.7406 without restraints) Performing minimization step: 2061. Total energy = 1672.6412 kcal/mol (1666.0499 without restraints) Performing minimization step: 2062. Total energy = 1671.9504 kcal/mol (1665.3601 without restraints) Performing minimization step: 2063. Total energy = 1671.2606 kcal/mol (1664.6717 without restraints) Performing minimization step: 2064. Total energy = 1670.5721 kcal/mol (1663.9844 without restraints) Performing minimization step: 2065. Total energy = 1669.8846 kcal/mol (1663.2982 without restraints) Performing minimization step: 2066. Total energy = 1669.1986 kcal/mol (1662.6133 without restraints) Performing minimization step: 2067. Total energy = 1668.5133 kcal/mol (1661.9293 without restraints) Performing minimization step: 2068. Total energy = 1667.8294 kcal/mol (1661.2466 without restraints) Performing minimization step: 2069. Total energy = 1667.1463 kcal/mol (1660.5647 without restraints) Performing minimization step: 2070. Total energy = 1666.4647 kcal/mol (1659.8843 without restraints) Performing minimization step: 2071. Total energy = 1665.7840 kcal/mol (1659.2049 without restraints) Performing minimization step: 2072. Total energy = 1665.1045 kcal/mol (1658.5267 without restraints) Performing minimization step: 2073. Total energy = 1664.4263 kcal/mol (1657.8497 without restraints) Performing minimization step: 2074. Total energy = 1663.7491 kcal/mol (1657.1737 without restraints) Performing minimization step: 2075. Total energy = 1663.0724 kcal/mol (1656.4981 without restraints) Performing minimization step: 2076. Total energy = 1662.3975 kcal/mol (1655.8246 without restraints) Performing minimization step: 2077. Total energy = 1661.7238 kcal/mol (1655.1522 without restraints) Performing minimization step: 2078. Total energy = 1661.0512 kcal/mol (1654.4807 without restraints) Performing minimization step: 2079. Total energy = 1660.3796 kcal/mol (1653.8103 without restraints) Performing minimization step: 2080. Total energy = 1659.7091 kcal/mol (1653.1412 without restraints) Performing minimization step: 2081. Total energy = 1659.0399 kcal/mol (1652.4731 without restraints) Performing minimization step: 2082. Total energy = 1658.3717 kcal/mol (1651.8062 without restraints) Performing minimization step: 2083. Total energy = 1657.7047 kcal/mol (1651.1405 without restraints) Performing minimization step: 2084. Total energy = 1657.0389 kcal/mol (1650.4759 without restraints) Performing minimization step: 2085. Total energy = 1656.3742 kcal/mol (1649.8125 without restraints) Performing minimization step: 2086. Total energy = 1655.7107 kcal/mol (1649.1502 without restraints) Performing minimization step: 2087. Total energy = 1655.0483 kcal/mol (1648.4890 without restraints) Performing minimization step: 2088. Total energy = 1654.3871 kcal/mol (1647.8291 without restraints) Performing minimization step: 2089. Total energy = 1653.7270 kcal/mol (1647.1702 without restraints) Performing minimization step: 2090. Total energy = 1653.0681 kcal/mol (1646.5126 without restraints) Performing minimization step: 2091. Total energy = 1652.4103 kcal/mol (1645.8560 without restraints) Performing minimization step: 2092. Total energy = 1651.7539 kcal/mol (1645.2009 without restraints) Performing minimization step: 2093. Total energy = 1651.0984 kcal/mol (1644.5467 without restraints) Performing minimization step: 2094. Total energy = 1650.4444 kcal/mol (1643.8939 without restraints) Performing minimization step: 2095. Total energy = 1649.7915 kcal/mol (1643.2423 without restraints) Performing minimization step: 2096. Total energy = 1649.1397 kcal/mol (1642.5918 without restraints) Performing minimization step: 2097. Total energy = 1648.4889 kcal/mol (1641.9422 without restraints) Performing minimization step: 2098. Total energy = 1647.8393 kcal/mol (1641.2939 without restraints) Performing minimization step: 2099. Total energy = 1647.1908 kcal/mol (1640.6466 without restraints) Performing minimization step: 2100. Total energy = 1646.5435 kcal/mol (1640.0006 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 1645.8973 kcal/mol (1639.3557 without restraints) Performing minimization step: 2102. Total energy = 1645.2525 kcal/mol (1638.7122 without restraints) Performing minimization step: 2103. Total energy = 1644.6089 kcal/mol (1638.0699 without restraints) Performing minimization step: 2104. Total energy = 1643.9663 kcal/mol (1637.4285 without restraints) Performing minimization step: 2105. Total energy = 1643.3248 kcal/mol (1636.7883 without restraints) Performing minimization step: 2106. Total energy = 1642.6845 kcal/mol (1636.1493 without restraints) Performing minimization step: 2107. Total energy = 1642.0454 kcal/mol (1635.5114 without restraints) Performing minimization step: 2108. Total energy = 1641.4072 kcal/mol (1634.8745 without restraints) Performing minimization step: 2109. Total energy = 1640.7704 kcal/mol (1634.2390 without restraints) Performing minimization step: 2110. Total energy = 1640.1348 kcal/mol (1633.6047 without restraints) Performing minimization step: 2111. Total energy = 1639.5003 kcal/mol (1632.9715 without restraints) Performing minimization step: 2112. Total energy = 1638.8670 kcal/mol (1632.3395 without restraints) Performing minimization step: 2113. Total energy = 1638.2351 kcal/mol (1631.7089 without restraints) Performing minimization step: 2114. Total energy = 1637.6044 kcal/mol (1631.0795 without restraints) Performing minimization step: 2115. Total energy = 1636.9746 kcal/mol (1630.4510 without restraints) Performing minimization step: 2116. Total energy = 1636.3461 kcal/mol (1629.8237 without restraints) Performing minimization step: 2117. Total energy = 1635.7187 kcal/mol (1629.1976 without restraints) Performing minimization step: 2118. Total energy = 1635.0925 kcal/mol (1628.5727 without restraints) Performing minimization step: 2119. Total energy = 1634.4674 kcal/mol (1627.9489 without restraints) Performing minimization step: 2120. Total energy = 1633.8435 kcal/mol (1627.3263 without restraints) Performing minimization step: 2121. Total energy = 1633.2208 kcal/mol (1626.7049 without restraints) Performing minimization step: 2122. Total energy = 1632.5993 kcal/mol (1626.0847 without restraints) Performing minimization step: 2123. Total energy = 1631.9790 kcal/mol (1625.4657 without restraints) Performing minimization step: 2124. Total energy = 1631.3598 kcal/mol (1624.8478 without restraints) Performing minimization step: 2125. Total energy = 1630.7419 kcal/mol (1624.2311 without restraints) Performing minimization step: 2126. Total energy = 1630.1253 kcal/mol (1623.6159 without restraints) Performing minimization step: 2127. Total energy = 1629.5099 kcal/mol (1623.0018 without restraints) Performing minimization step: 2128. Total energy = 1628.8955 kcal/mol (1622.3887 without restraints) Performing minimization step: 2129. Total energy = 1628.2822 kcal/mol (1621.7767 without restraints) Performing minimization step: 2130. Total energy = 1627.6702 kcal/mol (1621.1660 without restraints) Performing minimization step: 2131. Total energy = 1627.0593 kcal/mol (1620.5565 without restraints) Performing minimization step: 2132. Total energy = 1626.4499 kcal/mol (1619.9484 without restraints) Performing minimization step: 2133. Total energy = 1625.8415 kcal/mol (1619.3414 without restraints) Performing minimization step: 2134. Total energy = 1625.2343 kcal/mol (1618.7354 without restraints) Performing minimization step: 2135. Total energy = 1624.6282 kcal/mol (1618.1306 without restraints) Performing minimization step: 2136. Total energy = 1624.0233 kcal/mol (1617.5270 without restraints) Performing minimization step: 2137. Total energy = 1623.4196 kcal/mol (1616.9246 without restraints) Performing minimization step: 2138. Total energy = 1622.8172 kcal/mol (1616.3236 without restraints) Performing minimization step: 2139. Total energy = 1622.2158 kcal/mol (1615.7235 without restraints) Performing minimization step: 2140. Total energy = 1621.6156 kcal/mol (1615.1246 without restraints) Performing minimization step: 2141. Total energy = 1621.0166 kcal/mol (1614.5269 without restraints) Performing minimization step: 2142. Total energy = 1620.4188 kcal/mol (1613.9305 without restraints) Performing minimization step: 2143. Total energy = 1619.8221 kcal/mol (1613.3351 without restraints) Performing minimization step: 2144. Total energy = 1619.2265 kcal/mol (1612.7408 without restraints) Performing minimization step: 2145. Total energy = 1618.6322 kcal/mol (1612.1479 without restraints) Performing minimization step: 2146. Total energy = 1618.0394 kcal/mol (1611.5564 without restraints) Performing minimization step: 2147. Total energy = 1617.4475 kcal/mol (1610.9659 without restraints) Performing minimization step: 2148. Total energy = 1616.8569 kcal/mol (1610.3765 without restraints) Performing minimization step: 2149. Total energy = 1616.2674 kcal/mol (1609.7884 without restraints) Performing minimization step: 2150. Total energy = 1615.6791 kcal/mol (1609.2014 without restraints) Performing minimization step: 2151. Total energy = 1615.0919 kcal/mol (1608.6156 without restraints) Performing minimization step: 2152. Total energy = 1614.5060 kcal/mol (1608.0311 without restraints) Performing minimization step: 2153. Total energy = 1613.9209 kcal/mol (1607.4473 without restraints) Performing minimization step: 2154. Total energy = 1613.3374 kcal/mol (1606.8651 without restraints) Performing minimization step: 2155. Total energy = 1612.7550 kcal/mol (1606.2841 without restraints) Performing minimization step: 2156. Total energy = 1612.1738 kcal/mol (1605.7043 without restraints) Performing minimization step: 2157. Total energy = 1611.5938 kcal/mol (1605.1256 without restraints) Performing minimization step: 2158. Total energy = 1611.0149 kcal/mol (1604.5479 without restraints) Performing minimization step: 2159. Total energy = 1610.4372 kcal/mol (1603.9716 without restraints) Performing minimization step: 2160. Total energy = 1609.8607 kcal/mol (1603.3965 without restraints) Performing minimization step: 2161. Total energy = 1609.2855 kcal/mol (1602.8227 without restraints) Performing minimization step: 2162. Total energy = 1608.7114 kcal/mol (1602.2499 without restraints) Performing minimization step: 2163. Total energy = 1608.1385 kcal/mol (1601.6784 without restraints) Performing minimization step: 2164. Total energy = 1607.5669 kcal/mol (1601.1083 without restraints) Performing minimization step: 2165. Total energy = 1606.9964 kcal/mol (1600.5390 without restraints) Performing minimization step: 2166. Total energy = 1606.4271 kcal/mol (1599.9711 without restraints) Performing minimization step: 2167. Total energy = 1605.8590 kcal/mol (1599.4043 without restraints) Performing minimization step: 2168. Total energy = 1605.2920 kcal/mol (1598.8387 without restraints) Performing minimization step: 2169. Total energy = 1604.7264 kcal/mol (1598.2746 without restraints) Performing minimization step: 2170. Total energy = 1604.1619 kcal/mol (1597.7114 without restraints) Performing minimization step: 2171. Total energy = 1603.5985 kcal/mol (1597.1494 without restraints) Performing minimization step: 2172. Total energy = 1603.0362 kcal/mol (1596.5885 without restraints) Performing minimization step: 2173. Total energy = 1602.4752 kcal/mol (1596.0288 without restraints) Performing minimization step: 2174. Total energy = 1601.9154 kcal/mol (1595.4703 without restraints) Performing minimization step: 2175. Total energy = 1601.3567 kcal/mol (1594.9130 without restraints) Performing minimization step: 2176. Total energy = 1600.7992 kcal/mol (1594.3569 without restraints) Performing minimization step: 2177. Total energy = 1600.2429 kcal/mol (1593.8020 without restraints) Performing minimization step: 2178. Total energy = 1599.6880 kcal/mol (1593.2486 without restraints) Performing minimization step: 2179. Total energy = 1599.1343 kcal/mol (1592.6962 without restraints) Performing minimization step: 2180. Total energy = 1598.5818 kcal/mol (1592.1452 without restraints) Performing minimization step: 2181. Total energy = 1598.0305 kcal/mol (1591.5952 without restraints) Performing minimization step: 2182. Total energy = 1597.4801 kcal/mol (1591.0461 without restraints) Performing minimization step: 2183. Total energy = 1596.9308 kcal/mol (1590.4982 without restraints) Performing minimization step: 2184. Total energy = 1596.3827 kcal/mol (1589.9515 without restraints) Performing minimization step: 2185. Total energy = 1595.8358 kcal/mol (1589.4060 without restraints) Performing minimization step: 2186. Total energy = 1595.2898 kcal/mol (1588.8614 without restraints) Performing minimization step: 2187. Total energy = 1594.7453 kcal/mol (1588.3183 without restraints) Performing minimization step: 2188. Total energy = 1594.2019 kcal/mol (1587.7763 without restraints) Performing minimization step: 2189. Total energy = 1593.6597 kcal/mol (1587.2355 without restraints) Performing minimization step: 2190. Total energy = 1593.1187 kcal/mol (1586.6959 without restraints) Performing minimization step: 2191. Total energy = 1592.5788 kcal/mol (1586.1574 without restraints) Performing minimization step: 2192. Total energy = 1592.0401 kcal/mol (1585.6201 without restraints) Performing minimization step: 2193. Total energy = 1591.5026 kcal/mol (1585.0840 without restraints) Performing minimization step: 2194. Total energy = 1590.9662 kcal/mol (1584.5490 without restraints) Performing minimization step: 2195. Total energy = 1590.4308 kcal/mol (1584.0150 without restraints) Performing minimization step: 2196. Total energy = 1589.8967 kcal/mol (1583.4823 without restraints) Performing minimization step: 2197. Total energy = 1589.3639 kcal/mol (1582.9509 without restraints) Performing minimization step: 2198. Total energy = 1588.8321 kcal/mol (1582.4206 without restraints) Performing minimization step: 2199. Total energy = 1588.3015 kcal/mol (1581.8914 without restraints) Performing minimization step: 2200. Total energy = 1587.7722 kcal/mol (1581.3635 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 1587.2440 kcal/mol (1580.8367 without restraints) Performing minimization step: 2202. Total energy = 1586.7171 kcal/mol (1580.3113 without restraints) Performing minimization step: 2203. Total energy = 1586.1912 kcal/mol (1579.7868 without restraints) Performing minimization step: 2204. Total energy = 1585.6662 kcal/mol (1579.2632 without restraints) Performing minimization step: 2205. Total energy = 1585.1427 kcal/mol (1578.7411 without restraints) Performing minimization step: 2206. Total energy = 1584.6207 kcal/mol (1578.2205 without restraints) Performing minimization step: 2207. Total energy = 1584.0994 kcal/mol (1577.7007 without restraints) Performing minimization step: 2208. Total energy = 1583.5792 kcal/mol (1577.1816 without restraints) Performing minimization step: 2209. Total energy = 1583.0600 kcal/mol (1576.6641 without restraints) Performing minimization step: 2210. Total energy = 1582.5422 kcal/mol (1576.1478 without restraints) Performing minimization step: 2211. Total energy = 1582.0255 kcal/mol (1575.6325 without restraints) Performing minimization step: 2212. Total energy = 1581.5099 kcal/mol (1575.1182 without restraints) Performing minimization step: 2213. Total energy = 1580.9957 kcal/mol (1574.6055 without restraints) Performing minimization step: 2214. Total energy = 1580.4827 kcal/mol (1574.0940 without restraints) Performing minimization step: 2215. Total energy = 1579.9705 kcal/mol (1573.5832 without restraints) Performing minimization step: 2216. Total energy = 1579.4598 kcal/mol (1573.0740 without restraints) Performing minimization step: 2217. Total energy = 1578.9501 kcal/mol (1572.5657 without restraints) Performing minimization step: 2218. Total energy = 1578.4414 kcal/mol (1572.0584 without restraints) Performing minimization step: 2219. Total energy = 1577.9339 kcal/mol (1571.5524 without restraints) Performing minimization step: 2220. Total energy = 1577.4276 kcal/mol (1571.0475 without restraints) Performing minimization step: 2221. Total energy = 1576.9224 kcal/mol (1570.5438 without restraints) Performing minimization step: 2222. Total energy = 1576.4182 kcal/mol (1570.0410 without restraints) Performing minimization step: 2223. Total energy = 1575.9155 kcal/mol (1569.5398 without restraints) Performing minimization step: 2224. Total energy = 1575.4136 kcal/mol (1569.0394 without restraints) Performing minimization step: 2225. Total energy = 1574.9134 kcal/mol (1568.5406 without restraints) Performing minimization step: 2226. Total energy = 1574.4139 kcal/mol (1568.0425 without restraints) Performing minimization step: 2227. Total energy = 1573.9155 kcal/mol (1567.5456 without restraints) Performing minimization step: 2228. Total energy = 1573.4182 kcal/mol (1567.0498 without restraints) Performing minimization step: 2229. Total energy = 1572.9221 kcal/mol (1566.5551 without restraints) Performing minimization step: 2230. Total energy = 1572.4271 kcal/mol (1566.0616 without restraints) Performing minimization step: 2231. Total energy = 1571.9334 kcal/mol (1565.5694 without restraints) Performing minimization step: 2232. Total energy = 1571.4405 kcal/mol (1565.0779 without restraints) Performing minimization step: 2233. Total energy = 1570.9486 kcal/mol (1564.5875 without restraints) Performing minimization step: 2234. Total energy = 1570.4579 kcal/mol (1564.0982 without restraints) Performing minimization step: 2235. Total energy = 1569.9685 kcal/mol (1563.6103 without restraints) Performing minimization step: 2236. Total energy = 1569.4804 kcal/mol (1563.1237 without restraints) Performing minimization step: 2237. Total energy = 1568.9932 kcal/mol (1562.6380 without restraints) Performing minimization step: 2238. Total energy = 1568.5071 kcal/mol (1562.1534 without restraints) Performing minimization step: 2239. Total energy = 1568.0223 kcal/mol (1561.6701 without restraints) Performing minimization step: 2240. Total energy = 1567.5386 kcal/mol (1561.1878 without restraints) Performing minimization step: 2241. Total energy = 1567.0562 kcal/mol (1560.7069 without restraints) Performing minimization step: 2242. Total energy = 1566.5748 kcal/mol (1560.2270 without restraints) Performing minimization step: 2243. Total energy = 1566.0945 kcal/mol (1559.7482 without restraints) Performing minimization step: 2244. Total energy = 1565.6152 kcal/mol (1559.2703 without restraints) Performing minimization step: 2245. Total energy = 1565.1369 kcal/mol (1558.7937 without restraints) Performing minimization step: 2246. Total energy = 1564.6599 kcal/mol (1558.3180 without restraints) Performing minimization step: 2247. Total energy = 1564.1839 kcal/mol (1557.8435 without restraints) Performing minimization step: 2248. Total energy = 1563.7087 kcal/mol (1557.3698 without restraints) Performing minimization step: 2249. Total energy = 1563.2348 kcal/mol (1556.8974 without restraints) Performing minimization step: 2250. Total energy = 1562.7622 kcal/mol (1556.4263 without restraints) Performing minimization step: 2251. Total energy = 1562.2905 kcal/mol (1555.9561 without restraints) Performing minimization step: 2252. Total energy = 1561.8201 kcal/mol (1555.4872 without restraints) Performing minimization step: 2253. Total energy = 1561.3505 kcal/mol (1555.0191 without restraints) Performing minimization step: 2254. Total energy = 1560.8821 kcal/mol (1554.5522 without restraints) Performing minimization step: 2255. Total energy = 1560.4148 kcal/mol (1554.0864 without restraints) Performing minimization step: 2256. Total energy = 1559.9485 kcal/mol (1553.6217 without restraints) Performing minimization step: 2257. Total energy = 1559.4836 kcal/mol (1553.1582 without restraints) Performing minimization step: 2258. Total energy = 1559.0194 kcal/mol (1552.6956 without restraints) Performing minimization step: 2259. Total energy = 1558.5564 kcal/mol (1552.2341 without restraints) Performing minimization step: 2260. Total energy = 1558.0947 kcal/mol (1551.7741 without restraints) Performing minimization step: 2261. Total energy = 1557.6341 kcal/mol (1551.3147 without restraints) Performing minimization step: 2262. Total energy = 1557.1743 kcal/mol (1550.8564 without restraints) Performing minimization step: 2263. Total energy = 1556.7156 kcal/mol (1550.3993 without restraints) Performing minimization step: 2264. Total energy = 1556.2579 kcal/mol (1549.9431 without restraints) Performing minimization step: 2265. Total energy = 1555.8013 kcal/mol (1549.4880 without restraints) Performing minimization step: 2266. Total energy = 1555.3457 kcal/mol (1549.0340 without restraints) Performing minimization step: 2267. Total energy = 1554.8912 kcal/mol (1548.5809 without restraints) Performing minimization step: 2268. Total energy = 1554.4378 kcal/mol (1548.1291 without restraints) Performing minimization step: 2269. Total energy = 1553.9854 kcal/mol (1547.6782 without restraints) Performing minimization step: 2270. Total energy = 1553.5340 kcal/mol (1547.2283 without restraints) Performing minimization step: 2271. Total energy = 1553.0837 kcal/mol (1546.7796 without restraints) Performing minimization step: 2272. Total energy = 1552.6344 kcal/mol (1546.3317 without restraints) Performing minimization step: 2273. Total energy = 1552.1862 kcal/mol (1545.8851 without restraints) Performing minimization step: 2274. Total energy = 1551.7391 kcal/mol (1545.4396 without restraints) Performing minimization step: 2275. Total energy = 1551.2932 kcal/mol (1544.9953 without restraints) Performing minimization step: 2276. Total energy = 1550.8486 kcal/mol (1544.5521 without restraints) Performing minimization step: 2277. Total energy = 1550.4046 kcal/mol (1544.1097 without restraints) Performing minimization step: 2278. Total energy = 1549.9617 kcal/mol (1543.6683 without restraints) Performing minimization step: 2279. Total energy = 1549.5199 kcal/mol (1543.2280 without restraints) Performing minimization step: 2280. Total energy = 1549.0790 kcal/mol (1542.7887 without restraints) Performing minimization step: 2281. Total energy = 1548.6393 kcal/mol (1542.3505 without restraints) Performing minimization step: 2282. Total energy = 1548.2005 kcal/mol (1541.9133 without restraints) Performing minimization step: 2283. Total energy = 1547.7628 kcal/mol (1541.4771 without restraints) Performing minimization step: 2284. Total energy = 1547.3262 kcal/mol (1541.0420 without restraints) Performing minimization step: 2285. Total energy = 1546.8905 kcal/mol (1540.6078 without restraints) Performing minimization step: 2286. Total energy = 1546.4556 kcal/mol (1540.1744 without restraints) Performing minimization step: 2287. Total energy = 1546.0219 kcal/mol (1539.7424 without restraints) Performing minimization step: 2288. Total energy = 1545.5893 kcal/mol (1539.3113 without restraints) Performing minimization step: 2289. Total energy = 1545.1576 kcal/mol (1538.8811 without restraints) Performing minimization step: 2290. Total energy = 1544.7269 kcal/mol (1538.4521 without restraints) Performing minimization step: 2291. Total energy = 1544.2976 kcal/mol (1538.0243 without restraints) Performing minimization step: 2292. Total energy = 1543.8690 kcal/mol (1537.5974 without restraints) Performing minimization step: 2293. Total energy = 1543.4415 kcal/mol (1537.1714 without restraints) Performing minimization step: 2294. Total energy = 1543.0151 kcal/mol (1536.7465 without restraints) Performing minimization step: 2295. Total energy = 1542.5894 kcal/mol (1536.3224 without restraints) Performing minimization step: 2296. Total energy = 1542.1650 kcal/mol (1535.8996 without restraints) Performing minimization step: 2297. Total energy = 1541.7415 kcal/mol (1535.4776 without restraints) Performing minimization step: 2298. Total energy = 1541.3190 kcal/mol (1535.0567 without restraints) Performing minimization step: 2299. Total energy = 1540.8975 kcal/mol (1534.6367 without restraints) Performing minimization step: 2300. Total energy = 1540.4770 kcal/mol (1534.2178 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 1540.0572 kcal/mol (1533.7996 without restraints) Performing minimization step: 2302. Total energy = 1539.6386 kcal/mol (1533.3826 without restraints) Performing minimization step: 2303. Total energy = 1539.2211 kcal/mol (1532.9668 without restraints) Performing minimization step: 2304. Total energy = 1538.8047 kcal/mol (1532.5518 without restraints) Performing minimization step: 2305. Total energy = 1538.3892 kcal/mol (1532.1380 without restraints) Performing minimization step: 2306. Total energy = 1537.9748 kcal/mol (1531.7250 without restraints) Performing minimization step: 2307. Total energy = 1537.5617 kcal/mol (1531.3136 without restraints) Performing minimization step: 2308. Total energy = 1537.1491 kcal/mol (1530.9026 without restraints) Performing minimization step: 2309. Total energy = 1536.7374 kcal/mol (1530.4925 without restraints) Performing minimization step: 2310. Total energy = 1536.3267 kcal/mol (1530.0834 without restraints) Performing minimization step: 2311. Total energy = 1535.9170 kcal/mol (1529.6752 without restraints) Performing minimization step: 2312. Total energy = 1535.5082 kcal/mol (1529.2680 without restraints) Performing minimization step: 2313. Total energy = 1535.1004 kcal/mol (1528.8618 without restraints) Performing minimization step: 2314. Total energy = 1534.6934 kcal/mol (1528.4563 without restraints) Performing minimization step: 2315. Total energy = 1534.2873 kcal/mol (1528.0518 without restraints) Performing minimization step: 2316. Total energy = 1533.8825 kcal/mol (1527.6487 without restraints) Performing minimization step: 2317. Total energy = 1533.4785 kcal/mol (1527.2461 without restraints) Performing minimization step: 2318. Total energy = 1533.0753 kcal/mol (1526.8447 without restraints) Performing minimization step: 2319. Total energy = 1532.6733 kcal/mol (1526.4442 without restraints) Performing minimization step: 2320. Total energy = 1532.2723 kcal/mol (1526.0450 without restraints) Performing minimization step: 2321. Total energy = 1531.8722 kcal/mol (1525.6463 without restraints) Performing minimization step: 2322. Total energy = 1531.4730 kcal/mol (1525.2487 without restraints) Performing minimization step: 2323. Total energy = 1531.0747 kcal/mol (1524.8521 without restraints) Performing minimization step: 2324. Total energy = 1530.6778 kcal/mol (1524.4568 without restraints) Performing minimization step: 2325. Total energy = 1530.2811 kcal/mol (1524.0617 without restraints) Performing minimization step: 2326. Total energy = 1529.8857 kcal/mol (1523.6679 without restraints) Performing minimization step: 2327. Total energy = 1529.4912 kcal/mol (1523.2752 without restraints) Performing minimization step: 2328. Total energy = 1529.0977 kcal/mol (1522.8832 without restraints) Performing minimization step: 2329. Total energy = 1528.7050 kcal/mol (1522.4919 without restraints) Performing minimization step: 2330. Total energy = 1528.3128 kcal/mol (1522.1015 without restraints) Performing minimization step: 2331. Total energy = 1527.9218 kcal/mol (1521.7120 without restraints) Performing minimization step: 2332. Total energy = 1527.5319 kcal/mol (1521.3238 without restraints) Performing minimization step: 2333. Total energy = 1527.1431 kcal/mol (1520.9366 without restraints) Performing minimization step: 2334. Total energy = 1526.7550 kcal/mol (1520.5501 without restraints) Performing minimization step: 2335. Total energy = 1526.3679 kcal/mol (1520.1646 without restraints) Performing minimization step: 2336. Total energy = 1525.9816 kcal/mol (1519.7800 without restraints) Performing minimization step: 2337. Total energy = 1525.5963 kcal/mol (1519.3963 without restraints) Performing minimization step: 2338. Total energy = 1525.2121 kcal/mol (1519.0137 without restraints) Performing minimization step: 2339. Total energy = 1524.8285 kcal/mol (1518.6318 without restraints) Performing minimization step: 2340. Total energy = 1524.4460 kcal/mol (1518.2509 without restraints) Performing minimization step: 2341. Total energy = 1524.0643 kcal/mol (1517.8708 without restraints) Performing minimization step: 2342. Total energy = 1523.6835 kcal/mol (1517.4916 without restraints) Performing minimization step: 2343. Total energy = 1523.3035 kcal/mol (1517.1132 without restraints) Performing minimization step: 2344. Total energy = 1522.9244 kcal/mol (1516.7358 without restraints) Performing minimization step: 2345. Total energy = 1522.5463 kcal/mol (1516.3593 without restraints) Performing minimization step: 2346. Total energy = 1522.1690 kcal/mol (1515.9836 without restraints) Performing minimization step: 2347. Total energy = 1521.7926 kcal/mol (1515.6088 without restraints) Performing minimization step: 2348. Total energy = 1521.4170 kcal/mol (1515.2350 without restraints) Performing minimization step: 2349. Total energy = 1521.0425 kcal/mol (1514.8621 without restraints) Performing minimization step: 2350. Total energy = 1520.6687 kcal/mol (1514.4898 without restraints) Performing minimization step: 2351. Total energy = 1520.2958 kcal/mol (1514.1186 without restraints) Performing minimization step: 2352. Total energy = 1519.9238 kcal/mol (1513.7483 without restraints) Performing minimization step: 2353. Total energy = 1519.5526 kcal/mol (1513.3788 without restraints) Performing minimization step: 2354. Total energy = 1519.1826 kcal/mol (1513.0103 without restraints) Performing minimization step: 2355. Total energy = 1518.8131 kcal/mol (1512.6426 without restraints) Performing minimization step: 2356. Total energy = 1518.4446 kcal/mol (1512.2757 without restraints) Performing minimization step: 2357. Total energy = 1518.0773 kcal/mol (1511.9100 without restraints) Performing minimization step: 2358. Total energy = 1517.7103 kcal/mol (1511.5446 without restraints) Performing minimization step: 2359. Total energy = 1517.3444 kcal/mol (1511.1805 without restraints) Performing minimization step: 2360. Total energy = 1516.9794 kcal/mol (1510.8171 without restraints) Performing minimization step: 2361. Total energy = 1516.6151 kcal/mol (1510.4544 without restraints) Performing minimization step: 2362. Total energy = 1516.2517 kcal/mol (1510.0927 without restraints) Performing minimization step: 2363. Total energy = 1515.8891 kcal/mol (1509.7318 without restraints) Performing minimization step: 2364. Total energy = 1515.5272 kcal/mol (1509.3715 without restraints) Performing minimization step: 2365. Total energy = 1515.1661 kcal/mol (1509.0118 without restraints) Performing minimization step: 2366. Total energy = 1514.8057 kcal/mol (1508.6533 without restraints) Performing minimization step: 2367. Total energy = 1514.4465 kcal/mol (1508.2958 without restraints) Performing minimization step: 2368. Total energy = 1514.0882 kcal/mol (1507.9392 without restraints) Performing minimization step: 2369. Total energy = 1513.7308 kcal/mol (1507.5833 without restraints) Performing minimization step: 2370. Total energy = 1513.3741 kcal/mol (1507.2285 without restraints) Performing minimization step: 2371. Total energy = 1513.0183 kcal/mol (1506.8742 without restraints) Performing minimization step: 2372. Total energy = 1512.6632 kcal/mol (1506.5208 without restraints) Performing minimization step: 2373. Total energy = 1512.3089 kcal/mol (1506.1682 without restraints) Performing minimization step: 2374. Total energy = 1511.9555 kcal/mol (1505.8164 without restraints) Performing minimization step: 2375. Total energy = 1511.6030 kcal/mol (1505.4656 without restraints) Performing minimization step: 2376. Total energy = 1511.2512 kcal/mol (1505.1154 without restraints) Performing minimization step: 2377. Total energy = 1510.9001 kcal/mol (1504.7661 without restraints) Performing minimization step: 2378. Total energy = 1510.5499 kcal/mol (1504.4175 without restraints) Performing minimization step: 2379. Total energy = 1510.2005 kcal/mol (1504.0698 without restraints) Performing minimization step: 2380. Total energy = 1509.8519 kcal/mol (1503.7228 without restraints) Performing minimization step: 2381. Total energy = 1509.5044 kcal/mol (1503.3770 without restraints) Performing minimization step: 2382. Total energy = 1509.1573 kcal/mol (1503.0316 without restraints) Performing minimization step: 2383. Total energy = 1508.8112 kcal/mol (1502.6873 without restraints) Performing minimization step: 2384. Total energy = 1508.4659 kcal/mol (1502.3436 without restraints) Performing minimization step: 2385. Total energy = 1508.1213 kcal/mol (1502.0006 without restraints) Performing minimization step: 2386. Total energy = 1507.7774 kcal/mol (1501.6584 without restraints) Performing minimization step: 2387. Total energy = 1507.4344 kcal/mol (1501.3171 without restraints) Performing minimization step: 2388. Total energy = 1507.0922 kcal/mol (1500.9765 without restraints) Performing minimization step: 2389. Total energy = 1506.7507 kcal/mol (1500.6368 without restraints) Performing minimization step: 2390. Total energy = 1506.4101 kcal/mol (1500.2978 without restraints) Performing minimization step: 2391. Total energy = 1506.0701 kcal/mol (1499.9595 without restraints) Performing minimization step: 2392. Total energy = 1505.7310 kcal/mol (1499.6221 without restraints) Performing minimization step: 2393. Total energy = 1505.3926 kcal/mol (1499.2854 without restraints) Performing minimization step: 2394. Total energy = 1505.0550 kcal/mol (1498.9495 without restraints) Performing minimization step: 2395. Total energy = 1504.7184 kcal/mol (1498.6145 without restraints) Performing minimization step: 2396. Total energy = 1504.3823 kcal/mol (1498.2802 without restraints) Performing minimization step: 2397. Total energy = 1504.0471 kcal/mol (1497.9466 without restraints) Performing minimization step: 2398. Total energy = 1503.7125 kcal/mol (1497.6137 without restraints) Performing minimization step: 2399. Total energy = 1503.3787 kcal/mol (1497.2817 without restraints) Performing minimization step: 2400. Total energy = 1503.0455 kcal/mol (1496.9501 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 1502.7134 kcal/mol (1496.6197 without restraints) Performing minimization step: 2402. Total energy = 1502.3819 kcal/mol (1496.2899 without restraints) Performing minimization step: 2403. Total energy = 1502.0511 kcal/mol (1495.9608 without restraints) Performing minimization step: 2404. Total energy = 1501.7209 kcal/mol (1495.6323 without restraints) Performing minimization step: 2405. Total energy = 1501.3915 kcal/mol (1495.3046 without restraints) Performing minimization step: 2406. Total energy = 1501.0634 kcal/mol (1494.9782 without restraints) Performing minimization step: 2407. Total energy = 1500.7356 kcal/mol (1494.6521 without restraints) Performing minimization step: 2408. Total energy = 1500.4088 kcal/mol (1494.3270 without restraints) Performing minimization step: 2409. Total energy = 1500.0825 kcal/mol (1494.0024 without restraints) Performing minimization step: 2410. Total energy = 1499.7569 kcal/mol (1493.6785 without restraints) Performing minimization step: 2411. Total energy = 1499.4321 kcal/mol (1493.3554 without restraints) Performing minimization step: 2412. Total energy = 1499.1080 kcal/mol (1493.0330 without restraints) Performing minimization step: 2413. Total energy = 1498.7846 kcal/mol (1492.7113 without restraints) Performing minimization step: 2414. Total energy = 1498.4619 kcal/mol (1492.3903 without restraints) Performing minimization step: 2415. Total energy = 1498.1399 kcal/mol (1492.0701 without restraints) Performing minimization step: 2416. Total energy = 1497.8187 kcal/mol (1491.7505 without restraints) Performing minimization step: 2417. Total energy = 1497.4984 kcal/mol (1491.4319 without restraints) Performing minimization step: 2418. Total energy = 1497.1786 kcal/mol (1491.1138 without restraints) Performing minimization step: 2419. Total energy = 1496.8594 kcal/mol (1490.7963 without restraints) Performing minimization step: 2420. Total energy = 1496.5409 kcal/mol (1490.4796 without restraints) Performing minimization step: 2421. Total energy = 1496.2233 kcal/mol (1490.1637 without restraints) Performing minimization step: 2422. Total energy = 1495.9063 kcal/mol (1489.8484 without restraints) Performing minimization step: 2423. Total energy = 1495.5901 kcal/mol (1489.5339 without restraints) Performing minimization step: 2424. Total energy = 1495.2745 kcal/mol (1489.2200 without restraints) Performing minimization step: 2425. Total energy = 1494.9597 kcal/mol (1488.9069 without restraints) Performing minimization step: 2426. Total energy = 1494.6455 kcal/mol (1488.5945 without restraints) Performing minimization step: 2427. Total energy = 1494.3320 kcal/mol (1488.2827 without restraints) Performing minimization step: 2428. Total energy = 1494.0193 kcal/mol (1487.9717 without restraints) Performing minimization step: 2429. Total energy = 1493.7073 kcal/mol (1487.6614 without restraints) Performing minimization step: 2430. Total energy = 1493.3959 kcal/mol (1487.3517 without restraints) Performing minimization step: 2431. Total energy = 1493.0852 kcal/mol (1487.0427 without restraints) Performing minimization step: 2432. Total energy = 1492.7750 kcal/mol (1486.7342 without restraints) Performing minimization step: 2433. Total energy = 1492.4659 kcal/mol (1486.4268 without restraints) Performing minimization step: 2434. Total energy = 1492.1572 kcal/mol (1486.1199 without restraints) Performing minimization step: 2435. Total energy = 1491.8492 kcal/mol (1485.8136 without restraints) Performing minimization step: 2436. Total energy = 1491.5419 kcal/mol (1485.5080 without restraints) Performing minimization step: 2437. Total energy = 1491.2352 kcal/mol (1485.2030 without restraints) Performing minimization step: 2438. Total energy = 1490.9292 kcal/mol (1484.8988 without restraints) Performing minimization step: 2439. Total energy = 1490.6240 kcal/mol (1484.5954 without restraints) Performing minimization step: 2440. Total energy = 1490.3195 kcal/mol (1484.2925 without restraints) Performing minimization step: 2441. Total energy = 1490.0155 kcal/mol (1483.9903 without restraints) Performing minimization step: 2442. Total energy = 1489.7122 kcal/mol (1483.6887 without restraints) Performing minimization step: 2443. Total energy = 1489.4095 kcal/mol (1483.3877 without restraints) Performing minimization step: 2444. Total energy = 1489.1078 kcal/mol (1483.0879 without restraints) Performing minimization step: 2445. Total energy = 1488.8066 kcal/mol (1482.7883 without restraints) Performing minimization step: 2446. Total energy = 1488.5056 kcal/mol (1482.4890 without restraints) Performing minimization step: 2447. Total energy = 1488.2056 kcal/mol (1482.1907 without restraints) Performing minimization step: 2448. Total energy = 1487.9060 kcal/mol (1481.8929 without restraints) Performing minimization step: 2449. Total energy = 1487.6073 kcal/mol (1481.5959 without restraints) Performing minimization step: 2450. Total energy = 1487.3093 kcal/mol (1481.2995 without restraints) Performing minimization step: 2451. Total energy = 1487.0118 kcal/mol (1481.0038 without restraints) Performing minimization step: 2452. Total energy = 1486.7150 kcal/mol (1480.7087 without restraints) Performing minimization step: 2453. Total energy = 1486.4188 kcal/mol (1480.4142 without restraints) Performing minimization step: 2454. Total energy = 1486.1228 kcal/mol (1480.1200 without restraints) Performing minimization step: 2455. Total energy = 1485.8279 kcal/mol (1479.8268 without restraints) Performing minimization step: 2456. Total energy = 1485.5336 kcal/mol (1479.5343 without restraints) Performing minimization step: 2457. Total energy = 1485.2402 kcal/mol (1479.2426 without restraints) Performing minimization step: 2458. Total energy = 1484.9471 kcal/mol (1478.9513 without restraints) Performing minimization step: 2459. Total energy = 1484.6547 kcal/mol (1478.6606 without restraints) Performing minimization step: 2460. Total energy = 1484.3630 kcal/mol (1478.3705 without restraints) Performing minimization step: 2461. Total energy = 1484.0718 kcal/mol (1478.0811 without restraints) Performing minimization step: 2462. Total energy = 1483.7815 kcal/mol (1477.7925 without restraints) Performing minimization step: 2463. Total energy = 1483.4916 kcal/mol (1477.5044 without restraints) Performing minimization step: 2464. Total energy = 1483.2022 kcal/mol (1477.2166 without restraints) Performing minimization step: 2465. Total energy = 1482.9135 kcal/mol (1476.9297 without restraints) Performing minimization step: 2466. Total energy = 1482.6254 kcal/mol (1476.6434 without restraints) Performing minimization step: 2467. Total energy = 1482.3383 kcal/mol (1476.3581 without restraints) Performing minimization step: 2468. Total energy = 1482.0518 kcal/mol (1476.0732 without restraints) Performing minimization step: 2469. Total energy = 1481.7655 kcal/mol (1475.7887 without restraints) Performing minimization step: 2470. Total energy = 1481.4797 kcal/mol (1475.5046 without restraints) Performing minimization step: 2471. Total energy = 1481.1946 kcal/mol (1475.2213 without restraints) Performing minimization step: 2472. Total energy = 1480.9104 kcal/mol (1474.9388 without restraints) Performing minimization step: 2473. Total energy = 1480.6271 kcal/mol (1474.6572 without restraints) Performing minimization step: 2474. Total energy = 1480.3438 kcal/mol (1474.3757 without restraints) Performing minimization step: 2475. Total energy = 1480.0610 kcal/mol (1474.0946 without restraints) Performing minimization step: 2476. Total energy = 1479.7789 kcal/mol (1473.8142 without restraints) Performing minimization step: 2477. Total energy = 1479.4975 kcal/mol (1473.5346 without restraints) Performing minimization step: 2478. Total energy = 1479.2167 kcal/mol (1473.2555 without restraints) Performing minimization step: 2479. Total energy = 1478.9364 kcal/mol (1472.9771 without restraints) Performing minimization step: 2480. Total energy = 1478.6569 kcal/mol (1472.6992 without restraints) Performing minimization step: 2481. Total energy = 1478.3780 kcal/mol (1472.4221 without restraints) Performing minimization step: 2482. Total energy = 1478.0996 kcal/mol (1472.1453 without restraints) Performing minimization step: 2483. Total energy = 1477.8218 kcal/mol (1471.8693 without restraints) Performing minimization step: 2484. Total energy = 1477.5445 kcal/mol (1471.5939 without restraints) Performing minimization step: 2485. Total energy = 1477.2678 kcal/mol (1471.3188 without restraints) Performing minimization step: 2486. Total energy = 1476.9921 kcal/mol (1471.0448 without restraints) Performing minimization step: 2487. Total energy = 1476.7164 kcal/mol (1470.7709 without restraints) Performing minimization step: 2488. Total energy = 1476.4414 kcal/mol (1470.4975 without restraints) Performing minimization step: 2489. Total energy = 1476.1670 kcal/mol (1470.2249 without restraints) Performing minimization step: 2490. Total energy = 1475.8931 kcal/mol (1469.9527 without restraints) Performing minimization step: 2491. Total energy = 1475.6197 kcal/mol (1469.6811 without restraints) Performing minimization step: 2492. Total energy = 1475.3467 kcal/mol (1469.4097 without restraints) Performing minimization step: 2493. Total energy = 1475.0743 kcal/mol (1469.1392 without restraints) Performing minimization step: 2494. Total energy = 1474.8026 kcal/mol (1468.8692 without restraints) Performing minimization step: 2495. Total energy = 1474.5316 kcal/mol (1468.6000 without restraints) Performing minimization step: 2496. Total energy = 1474.2611 kcal/mol (1468.3312 without restraints) Performing minimization step: 2497. Total energy = 1473.9911 kcal/mol (1468.0629 without restraints) Performing minimization step: 2498. Total energy = 1473.7214 kcal/mol (1467.7950 without restraints) Performing minimization step: 2499. Total energy = 1473.4522 kcal/mol (1467.5276 without restraints) Performing minimization step: 2500. Total energy = 1473.1839 kcal/mol (1467.2609 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 1472.9160 kcal/mol (1466.9948 without restraints) Performing minimization step: 2502. Total energy = 1472.6487 kcal/mol (1466.7292 without restraints) Performing minimization step: 2503. Total energy = 1472.3819 kcal/mol (1466.4642 without restraints) Performing minimization step: 2504. Total energy = 1472.1157 kcal/mol (1466.1997 without restraints) Performing minimization step: 2505. Total energy = 1471.8503 kcal/mol (1465.9361 without restraints) Performing minimization step: 2506. Total energy = 1471.5853 kcal/mol (1465.6727 without restraints) Performing minimization step: 2507. Total energy = 1471.3207 kcal/mol (1465.4099 without restraints) Performing minimization step: 2508. Total energy = 1471.0566 kcal/mol (1465.1474 without restraints) Performing minimization step: 2509. Total energy = 1470.7928 kcal/mol (1464.8854 without restraints) Performing minimization step: 2510. Total energy = 1470.5297 kcal/mol (1464.6241 without restraints) Performing minimization step: 2511. Total energy = 1470.2673 kcal/mol (1464.3634 without restraints) Performing minimization step: 2512. Total energy = 1470.0053 kcal/mol (1464.1032 without restraints) Performing minimization step: 2513. Total energy = 1469.7441 kcal/mol (1463.8437 without restraints) Performing minimization step: 2514. Total energy = 1469.4832 kcal/mol (1463.5846 without restraints) Performing minimization step: 2515. Total energy = 1469.2228 kcal/mol (1463.3259 without restraints) Performing minimization step: 2516. Total energy = 1468.9630 kcal/mol (1463.0679 without restraints) Performing minimization step: 2517. Total energy = 1468.7040 kcal/mol (1462.8106 without restraints) Performing minimization step: 2518. Total energy = 1468.4453 kcal/mol (1462.5536 without restraints) Performing minimization step: 2519. Total energy = 1468.1870 kcal/mol (1462.2971 without restraints) Performing minimization step: 2520. Total energy = 1467.9292 kcal/mol (1462.0410 without restraints) Performing minimization step: 2521. Total energy = 1467.6718 kcal/mol (1461.7853 without restraints) Performing minimization step: 2522. Total energy = 1467.4150 kcal/mol (1461.5302 without restraints) Performing minimization step: 2523. Total energy = 1467.1587 kcal/mol (1461.2757 without restraints) Performing minimization step: 2524. Total energy = 1466.9028 kcal/mol (1461.0215 without restraints) Performing minimization step: 2525. Total energy = 1466.6475 kcal/mol (1460.7679 without restraints) Performing minimization step: 2526. Total energy = 1466.3927 kcal/mol (1460.5149 without restraints) Performing minimization step: 2527. Total energy = 1466.1385 kcal/mol (1460.2624 without restraints) Performing minimization step: 2528. Total energy = 1465.8848 kcal/mol (1460.0104 without restraints) Performing minimization step: 2529. Total energy = 1465.6315 kcal/mol (1459.7589 without restraints) Performing minimization step: 2530. Total energy = 1465.3789 kcal/mol (1459.5080 without restraints) Performing minimization step: 2531. Total energy = 1465.1266 kcal/mol (1459.2574 without restraints) Performing minimization step: 2532. Total energy = 1464.8748 kcal/mol (1459.0074 without restraints) Performing minimization step: 2533. Total energy = 1464.6234 kcal/mol (1458.7577 without restraints) Performing minimization step: 2534. Total energy = 1464.3726 kcal/mol (1458.5086 without restraints) Performing minimization step: 2535. Total energy = 1464.1222 kcal/mol (1458.2600 without restraints) Performing minimization step: 2536. Total energy = 1463.8725 kcal/mol (1458.0120 without restraints) Performing minimization step: 2537. Total energy = 1463.6232 kcal/mol (1457.7645 without restraints) Performing minimization step: 2538. Total energy = 1463.3748 kcal/mol (1457.5177 without restraints) Performing minimization step: 2539. Total energy = 1463.1267 kcal/mol (1457.2714 without restraints) Performing minimization step: 2540. Total energy = 1462.8788 kcal/mol (1457.0252 without restraints) Performing minimization step: 2541. Total energy = 1462.6310 kcal/mol (1456.7791 without restraints) Performing minimization step: 2542. Total energy = 1462.3841 kcal/mol (1456.5339 without restraints) Performing minimization step: 2543. Total energy = 1462.1374 kcal/mol (1456.2890 without restraints) Performing minimization step: 2544. Total energy = 1461.8915 kcal/mol (1456.0448 without restraints) Performing minimization step: 2545. Total energy = 1461.6460 kcal/mol (1455.8011 without restraints) Performing minimization step: 2546. Total energy = 1461.4011 kcal/mol (1455.5579 without restraints) Performing minimization step: 2547. Total energy = 1461.1563 kcal/mol (1455.3148 without restraints) Performing minimization step: 2548. Total energy = 1460.9121 kcal/mol (1455.0723 without restraints) Performing minimization step: 2549. Total energy = 1460.6685 kcal/mol (1454.8305 without restraints) Performing minimization step: 2550. Total energy = 1460.4254 kcal/mol (1454.5891 without restraints) Performing minimization step: 2551. Total energy = 1460.1830 kcal/mol (1454.3484 without restraints) Performing minimization step: 2552. Total energy = 1459.9408 kcal/mol (1454.1079 without restraints) Performing minimization step: 2553. Total energy = 1459.6991 kcal/mol (1453.8679 without restraints) Performing minimization step: 2554. Total energy = 1459.4579 kcal/mol (1453.6286 without restraints) Performing minimization step: 2555. Total energy = 1459.2172 kcal/mol (1453.3895 without restraints) Performing minimization step: 2556. Total energy = 1458.9766 kcal/mol (1453.1506 without restraints) Performing minimization step: 2557. Total energy = 1458.7365 kcal/mol (1452.9122 without restraints) Performing minimization step: 2558. Total energy = 1458.4971 kcal/mol (1452.6745 without restraints) Performing minimization step: 2559. Total energy = 1458.2583 kcal/mol (1452.4376 without restraints) Performing minimization step: 2560. Total energy = 1458.0197 kcal/mol (1452.2006 without restraints) Performing minimization step: 2561. Total energy = 1457.7816 kcal/mol (1451.9642 without restraints) Performing minimization step: 2562. Total energy = 1457.5440 kcal/mol (1451.7283 without restraints) Performing minimization step: 2563. Total energy = 1457.3077 kcal/mol (1451.4937 without restraints) Performing minimization step: 2564. Total energy = 1457.0707 kcal/mol (1451.2584 without restraints) Performing minimization step: 2565. Total energy = 1456.8343 kcal/mol (1451.0238 without restraints) Performing minimization step: 2566. Total energy = 1456.5984 kcal/mol (1450.7896 without restraints) Performing minimization step: 2567. Total energy = 1456.3630 kcal/mol (1450.5559 without restraints) Performing minimization step: 2568. Total energy = 1456.1282 kcal/mol (1450.3229 without restraints) Performing minimization step: 2569. Total energy = 1455.8938 kcal/mol (1450.0901 without restraints) Performing minimization step: 2570. Total energy = 1455.6597 kcal/mol (1449.8577 without restraints) Performing minimization step: 2571. Total energy = 1455.4260 kcal/mol (1449.6257 without restraints) Performing minimization step: 2572. Total energy = 1455.1927 kcal/mol (1449.3942 without restraints) Performing minimization step: 2573. Total energy = 1454.9600 kcal/mol (1449.1633 without restraints) Performing minimization step: 2574. Total energy = 1454.7278 kcal/mol (1448.9326 without restraints) Performing minimization step: 2575. Total energy = 1454.4958 kcal/mol (1448.7024 without restraints) Performing minimization step: 2576. Total energy = 1454.2641 kcal/mol (1448.4724 without restraints) Performing minimization step: 2577. Total energy = 1454.0331 kcal/mol (1448.2431 without restraints) Performing minimization step: 2578. Total energy = 1453.8026 kcal/mol (1448.0143 without restraints) Performing minimization step: 2579. Total energy = 1453.5724 kcal/mol (1447.7858 without restraints) Performing minimization step: 2580. Total energy = 1453.3427 kcal/mol (1447.5578 without restraints) Performing minimization step: 2581. Total energy = 1453.1135 kcal/mol (1447.3303 without restraints) Performing minimization step: 2582. Total energy = 1452.8846 kcal/mol (1447.1031 without restraints) Performing minimization step: 2583. Total energy = 1452.6561 kcal/mol (1446.8763 without restraints) Performing minimization step: 2584. Total energy = 1452.4280 kcal/mol (1446.6499 without restraints) Performing minimization step: 2585. Total energy = 1452.2001 kcal/mol (1446.4237 without restraints) Performing minimization step: 2586. Total energy = 1451.9728 kcal/mol (1446.1981 without restraints) Performing minimization step: 2587. Total energy = 1451.7459 kcal/mol (1445.9729 without restraints) Performing minimization step: 2588. Total energy = 1451.5197 kcal/mol (1445.7483 without restraints) Performing minimization step: 2589. Total energy = 1451.2932 kcal/mol (1445.5235 without restraints) Performing minimization step: 2590. Total energy = 1451.0675 kcal/mol (1445.2995 without restraints) Performing minimization step: 2591. Total energy = 1450.8420 kcal/mol (1445.0758 without restraints) Performing minimization step: 2592. Total energy = 1450.6172 kcal/mol (1444.8527 without restraints) Performing minimization step: 2593. Total energy = 1450.3928 kcal/mol (1444.6300 without restraints) Performing minimization step: 2594. Total energy = 1450.1689 kcal/mol (1444.4077 without restraints) Performing minimization step: 2595. Total energy = 1449.9453 kcal/mol (1444.1858 without restraints) Performing minimization step: 2596. Total energy = 1449.7221 kcal/mol (1443.9643 without restraints) Performing minimization step: 2597. Total energy = 1449.4994 kcal/mol (1443.7432 without restraints) Performing minimization step: 2598. Total energy = 1449.2770 kcal/mol (1443.5226 without restraints) Performing minimization step: 2599. Total energy = 1449.0553 kcal/mol (1443.3025 without restraints) Performing minimization step: 2600. Total energy = 1448.8341 kcal/mol (1443.0830 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 1448.6129 kcal/mol (1442.8635 without restraints) Performing minimization step: 2602. Total energy = 1448.3926 kcal/mol (1442.6448 without restraints) Performing minimization step: 2603. Total energy = 1448.1723 kcal/mol (1442.4262 without restraints) Performing minimization step: 2604. Total energy = 1447.9523 kcal/mol (1442.2079 without restraints) Performing minimization step: 2605. Total energy = 1447.7326 kcal/mol (1441.9900 without restraints) Performing minimization step: 2606. Total energy = 1447.5134 kcal/mol (1441.7725 without restraints) Performing minimization step: 2607. Total energy = 1447.2946 kcal/mol (1441.5553 without restraints) Performing minimization step: 2608. Total energy = 1447.0762 kcal/mol (1441.3385 without restraints) Performing minimization step: 2609. Total energy = 1446.8583 kcal/mol (1441.1225 without restraints) Performing minimization step: 2610. Total energy = 1446.6408 kcal/mol (1440.9066 without restraints) Performing minimization step: 2611. Total energy = 1446.4236 kcal/mol (1440.6910 without restraints) Performing minimization step: 2612. Total energy = 1446.2069 kcal/mol (1440.4760 without restraints) Performing minimization step: 2613. Total energy = 1445.9905 kcal/mol (1440.2612 without restraints) Performing minimization step: 2614. Total energy = 1445.7744 kcal/mol (1440.0468 without restraints) Performing minimization step: 2615. Total energy = 1445.5587 kcal/mol (1439.8328 without restraints) Performing minimization step: 2616. Total energy = 1445.3431 kcal/mol (1439.6189 without restraints) Performing minimization step: 2617. Total energy = 1445.1278 kcal/mol (1439.4052 without restraints) Performing minimization step: 2618. Total energy = 1444.9132 kcal/mol (1439.1923 without restraints) Performing minimization step: 2619. Total energy = 1444.6991 kcal/mol (1438.9800 without restraints) Performing minimization step: 2620. Total energy = 1444.4855 kcal/mol (1438.7678 without restraints) Performing minimization step: 2621. Total energy = 1444.2718 kcal/mol (1438.5558 without restraints) Performing minimization step: 2622. Total energy = 1444.0586 kcal/mol (1438.3444 without restraints) Performing minimization step: 2623. Total energy = 1443.8460 kcal/mol (1438.1333 without restraints) Performing minimization step: 2624. Total energy = 1443.6336 kcal/mol (1437.9227 without restraints) Performing minimization step: 2625. Total energy = 1443.4217 kcal/mol (1437.7124 without restraints) Performing minimization step: 2626. Total energy = 1443.2102 kcal/mol (1437.5025 without restraints) Performing minimization step: 2627. Total energy = 1442.9990 kcal/mol (1437.2930 without restraints) Performing minimization step: 2628. Total energy = 1442.7882 kcal/mol (1437.0838 without restraints) Performing minimization step: 2629. Total energy = 1442.5778 kcal/mol (1436.8752 without restraints) Performing minimization step: 2630. Total energy = 1442.3681 kcal/mol (1436.6670 without restraints) Performing minimization step: 2631. Total energy = 1442.1583 kcal/mol (1436.4589 without restraints) Performing minimization step: 2632. Total energy = 1441.9485 kcal/mol (1436.2507 without restraints) Performing minimization step: 2633. Total energy = 1441.7394 kcal/mol (1436.0433 without restraints) Performing minimization step: 2634. Total energy = 1441.5308 kcal/mol (1435.8363 without restraints) Performing minimization step: 2635. Total energy = 1441.3225 kcal/mol (1435.6296 without restraints) Performing minimization step: 2636. Total energy = 1441.1146 kcal/mol (1435.4234 without restraints) Performing minimization step: 2637. Total energy = 1440.9071 kcal/mol (1435.2175 without restraints) Performing minimization step: 2638. Total energy = 1440.6998 kcal/mol (1435.0119 without restraints) Performing minimization step: 2639. Total energy = 1440.4930 kcal/mol (1434.8067 without restraints) Performing minimization step: 2640. Total energy = 1440.2864 kcal/mol (1434.6017 without restraints) Performing minimization step: 2641. Total energy = 1440.0803 kcal/mol (1434.3973 without restraints) Performing minimization step: 2642. Total energy = 1439.8745 kcal/mol (1434.1932 without restraints) Performing minimization step: 2643. Total energy = 1439.6691 kcal/mol (1433.9894 without restraints) Performing minimization step: 2644. Total energy = 1439.4642 kcal/mol (1433.7861 without restraints) Performing minimization step: 2645. Total energy = 1439.2593 kcal/mol (1433.5828 without restraints) Performing minimization step: 2646. Total energy = 1439.0549 kcal/mol (1433.3800 without restraints) Performing minimization step: 2647. Total energy = 1438.8508 kcal/mol (1433.1775 without restraints) Performing minimization step: 2648. Total energy = 1438.6470 kcal/mol (1432.9754 without restraints) Performing minimization step: 2649. Total energy = 1438.4437 kcal/mol (1432.7737 without restraints) Performing minimization step: 2650. Total energy = 1438.2407 kcal/mol (1432.5723 without restraints) Performing minimization step: 2651. Total energy = 1438.0377 kcal/mol (1432.3710 without restraints) Performing minimization step: 2652. Total energy = 1437.8355 kcal/mol (1432.1704 without restraints) Performing minimization step: 2653. Total energy = 1437.6336 kcal/mol (1431.9701 without restraints) Performing minimization step: 2654. Total energy = 1437.4317 kcal/mol (1431.7699 without restraints) Performing minimization step: 2655. Total energy = 1437.2305 kcal/mol (1431.5702 without restraints) Performing minimization step: 2656. Total energy = 1437.0297 kcal/mol (1431.3711 without restraints) Performing minimization step: 2657. Total energy = 1436.8291 kcal/mol (1431.1720 without restraints) Performing minimization step: 2658. Total energy = 1436.6286 kcal/mol (1430.9731 without restraints) Performing minimization step: 2659. Total energy = 1436.4285 kcal/mol (1430.7747 without restraints) Performing minimization step: 2660. Total energy = 1436.2288 kcal/mol (1430.5764 without restraints) Performing minimization step: 2661. Total energy = 1436.0294 kcal/mol (1430.3788 without restraints) Performing minimization step: 2662. Total energy = 1435.8304 kcal/mol (1430.1815 without restraints) Performing minimization step: 2663. Total energy = 1435.6319 kcal/mol (1429.9845 without restraints) Performing minimization step: 2664. Total energy = 1435.4336 kcal/mol (1429.7878 without restraints) Performing minimization step: 2665. Total energy = 1435.2360 kcal/mol (1429.5918 without restraints) Performing minimization step: 2666. Total energy = 1435.0384 kcal/mol (1429.3959 without restraints) Performing minimization step: 2667. Total energy = 1434.8412 kcal/mol (1429.2002 without restraints) Performing minimization step: 2668. Total energy = 1434.6442 kcal/mol (1429.0048 without restraints) Performing minimization step: 2669. Total energy = 1434.4474 kcal/mol (1428.8096 without restraints) Performing minimization step: 2670. Total energy = 1434.2511 kcal/mol (1428.6149 without restraints) Performing minimization step: 2671. Total energy = 1434.0551 kcal/mol (1428.4205 without restraints) Performing minimization step: 2672. Total energy = 1433.8595 kcal/mol (1428.2265 without restraints) Performing minimization step: 2673. Total energy = 1433.6640 kcal/mol (1428.0326 without restraints) Performing minimization step: 2674. Total energy = 1433.4688 kcal/mol (1427.8390 without restraints) Performing minimization step: 2675. Total energy = 1433.2739 kcal/mol (1427.6456 without restraints) Performing minimization step: 2676. Total energy = 1433.0795 kcal/mol (1427.4528 without restraints) Performing minimization step: 2677. Total energy = 1432.8855 kcal/mol (1427.2604 without restraints) Performing minimization step: 2678. Total energy = 1432.6920 kcal/mol (1427.0685 without restraints) Performing minimization step: 2679. Total energy = 1432.4986 kcal/mol (1426.8767 without restraints) Performing minimization step: 2680. Total energy = 1432.3055 kcal/mol (1426.6851 without restraints) Performing minimization step: 2681. Total energy = 1432.1127 kcal/mol (1426.4939 without restraints) Performing minimization step: 2682. Total energy = 1431.9203 kcal/mol (1426.3030 without restraints) Performing minimization step: 2683. Total energy = 1431.7281 kcal/mol (1426.1125 without restraints) Performing minimization step: 2684. Total energy = 1431.5364 kcal/mol (1425.9223 without restraints) Performing minimization step: 2685. Total energy = 1431.3448 kcal/mol (1425.7322 without restraints) Performing minimization step: 2686. Total energy = 1431.1536 kcal/mol (1425.5426 without restraints) Performing minimization step: 2687. Total energy = 1430.9626 kcal/mol (1425.3532 without restraints) Performing minimization step: 2688. Total energy = 1430.7721 kcal/mol (1425.1643 without restraints) Performing minimization step: 2689. Total energy = 1430.5818 kcal/mol (1424.9755 without restraints) Performing minimization step: 2690. Total energy = 1430.3919 kcal/mol (1424.7872 without restraints) Performing minimization step: 2691. Total energy = 1430.2022 kcal/mol (1424.5990 without restraints) Performing minimization step: 2692. Total energy = 1430.0128 kcal/mol (1424.4113 without restraints) Performing minimization step: 2693. Total energy = 1429.8239 kcal/mol (1424.2238 without restraints) Performing minimization step: 2694. Total energy = 1429.6354 kcal/mol (1424.0372 without restraints) Performing minimization step: 2695. Total energy = 1429.4473 kcal/mol (1423.8504 without restraints) Performing minimization step: 2696. Total energy = 1429.2593 kcal/mol (1423.6639 without restraints) Performing minimization step: 2697. Total energy = 1429.0717 kcal/mol (1423.4779 without restraints) Performing minimization step: 2698. Total energy = 1428.8840 kcal/mol (1423.2917 without restraints) Performing minimization step: 2699. Total energy = 1428.6968 kcal/mol (1423.1061 without restraints) Performing minimization step: 2700. Total energy = 1428.5102 kcal/mol (1422.9211 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 1428.3239 kcal/mol (1422.7362 without restraints) Performing minimization step: 2702. Total energy = 1428.1375 kcal/mol (1422.5513 without restraints) Performing minimization step: 2703. Total energy = 1427.9515 kcal/mol (1422.3669 without restraints) Performing minimization step: 2704. Total energy = 1427.7659 kcal/mol (1422.1830 without restraints) Performing minimization step: 2705. Total energy = 1427.5807 kcal/mol (1421.9992 without restraints) Performing minimization step: 2706. Total energy = 1427.3955 kcal/mol (1421.8154 without restraints) Performing minimization step: 2707. Total energy = 1427.2106 kcal/mol (1421.6321 without restraints) Performing minimization step: 2708. Total energy = 1427.0261 kcal/mol (1421.4492 without restraints) Performing minimization step: 2709. Total energy = 1426.8420 kcal/mol (1421.2667 without restraints) Performing minimization step: 2710. Total energy = 1426.6582 kcal/mol (1421.0843 without restraints) Performing minimization step: 2711. Total energy = 1426.4742 kcal/mol (1420.9018 without restraints) Performing minimization step: 2712. Total energy = 1426.2907 kcal/mol (1420.7199 without restraints) Performing minimization step: 2713. Total energy = 1426.1077 kcal/mol (1420.5384 without restraints) Performing minimization step: 2714. Total energy = 1425.9250 kcal/mol (1420.3572 without restraints) Performing minimization step: 2715. Total energy = 1425.7426 kcal/mol (1420.1763 without restraints) Performing minimization step: 2716. Total energy = 1425.5604 kcal/mol (1419.9957 without restraints) Performing minimization step: 2717. Total energy = 1425.3787 kcal/mol (1419.8155 without restraints) Performing minimization step: 2718. Total energy = 1425.1972 kcal/mol (1419.6355 without restraints) Performing minimization step: 2719. Total energy = 1425.0161 kcal/mol (1419.4559 without restraints) Performing minimization step: 2720. Total energy = 1424.8351 kcal/mol (1419.2765 without restraints) Performing minimization step: 2721. Total energy = 1424.6545 kcal/mol (1419.0973 without restraints) Performing minimization step: 2722. Total energy = 1424.4740 kcal/mol (1418.9184 without restraints) Performing minimization step: 2723. Total energy = 1424.2939 kcal/mol (1418.7397 without restraints) Performing minimization step: 2724. Total energy = 1424.1138 kcal/mol (1418.5611 without restraints) Performing minimization step: 2725. Total energy = 1423.9339 kcal/mol (1418.3827 without restraints) Performing minimization step: 2726. Total energy = 1423.7544 kcal/mol (1418.2047 without restraints) Performing minimization step: 2727. Total energy = 1423.5754 kcal/mol (1418.0272 without restraints) Performing minimization step: 2728. Total energy = 1423.3969 kcal/mol (1417.8502 without restraints) Performing minimization step: 2729. Total energy = 1423.2185 kcal/mol (1417.6733 without restraints) Performing minimization step: 2730. Total energy = 1423.0403 kcal/mol (1417.4966 without restraints) Performing minimization step: 2731. Total energy = 1422.8622 kcal/mol (1417.3200 without restraints) Performing minimization step: 2732. Total energy = 1422.6847 kcal/mol (1417.1438 without restraints) Performing minimization step: 2733. Total energy = 1422.5073 kcal/mol (1416.9680 without restraints) Performing minimization step: 2734. Total energy = 1422.3303 kcal/mol (1416.7925 without restraints) Performing minimization step: 2735. Total energy = 1422.1535 kcal/mol (1416.6172 without restraints) Performing minimization step: 2736. Total energy = 1421.9770 kcal/mol (1416.4422 without restraints) Performing minimization step: 2737. Total energy = 1421.8008 kcal/mol (1416.2674 without restraints) Performing minimization step: 2738. Total energy = 1421.6249 kcal/mol (1416.0930 without restraints) Performing minimization step: 2739. Total energy = 1421.4492 kcal/mol (1415.9188 without restraints) Performing minimization step: 2740. Total energy = 1421.2738 kcal/mol (1415.7449 without restraints) Performing minimization step: 2741. Total energy = 1421.0985 kcal/mol (1415.5710 without restraints) Performing minimization step: 2742. Total energy = 1420.9236 kcal/mol (1415.3976 without restraints) Performing minimization step: 2743. Total energy = 1420.7489 kcal/mol (1415.2243 without restraints) Performing minimization step: 2744. Total energy = 1420.5747 kcal/mol (1415.0517 without restraints) Performing minimization step: 2745. Total energy = 1420.4008 kcal/mol (1414.8791 without restraints) Performing minimization step: 2746. Total energy = 1420.2266 kcal/mol (1414.7064 without restraints) Performing minimization step: 2747. Total energy = 1420.0531 kcal/mol (1414.5344 without restraints) Performing minimization step: 2748. Total energy = 1419.8799 kcal/mol (1414.3626 without restraints) Performing minimization step: 2749. Total energy = 1419.7070 kcal/mol (1414.1911 without restraints) Performing minimization step: 2750. Total energy = 1419.5343 kcal/mol (1414.0200 without restraints) Performing minimization step: 2751. Total energy = 1419.3621 kcal/mol (1413.8492 without restraints) Performing minimization step: 2752. Total energy = 1419.1900 kcal/mol (1413.6785 without restraints) Performing minimization step: 2753. Total energy = 1419.0181 kcal/mol (1413.5081 without restraints) Performing minimization step: 2754. Total energy = 1418.8464 kcal/mol (1413.3378 without restraints) Performing minimization step: 2755. Total energy = 1418.6753 kcal/mol (1413.1682 without restraints) Performing minimization step: 2756. Total energy = 1418.5042 kcal/mol (1412.9985 without restraints) Performing minimization step: 2757. Total energy = 1418.3335 kcal/mol (1412.8292 without restraints) Performing minimization step: 2758. Total energy = 1418.1631 kcal/mol (1412.6603 without restraints) Performing minimization step: 2759. Total energy = 1417.9927 kcal/mol (1412.4912 without restraints) Performing minimization step: 2760. Total energy = 1417.8224 kcal/mol (1412.3224 without restraints) Performing minimization step: 2761. Total energy = 1417.6527 kcal/mol (1412.1541 without restraints) Performing minimization step: 2762. Total energy = 1417.4829 kcal/mol (1411.9858 without restraints) Performing minimization step: 2763. Total energy = 1417.3137 kcal/mol (1411.8180 without restraints) Performing minimization step: 2764. Total energy = 1417.1447 kcal/mol (1411.6504 without restraints) Performing minimization step: 2765. Total energy = 1416.9759 kcal/mol (1411.4831 without restraints) Performing minimization step: 2766. Total energy = 1416.8074 kcal/mol (1411.3160 without restraints) Performing minimization step: 2767. Total energy = 1416.6392 kcal/mol (1411.1492 without restraints) Performing minimization step: 2768. Total energy = 1416.4713 kcal/mol (1410.9826 without restraints) Performing minimization step: 2769. Total energy = 1416.3036 kcal/mol (1410.8163 without restraints) Performing minimization step: 2770. Total energy = 1416.1361 kcal/mol (1410.6503 without restraints) Performing minimization step: 2771. Total energy = 1415.9689 kcal/mol (1410.4846 without restraints) Performing minimization step: 2772. Total energy = 1415.8020 kcal/mol (1410.3190 without restraints) Performing minimization step: 2773. Total energy = 1415.6353 kcal/mol (1410.1537 without restraints) Performing minimization step: 2774. Total energy = 1415.4688 kcal/mol (1409.9886 without restraints) Performing minimization step: 2775. Total energy = 1415.3026 kcal/mol (1409.8238 without restraints) Performing minimization step: 2776. Total energy = 1415.1366 kcal/mol (1409.6591 without restraints) Performing minimization step: 2777. Total energy = 1414.9710 kcal/mol (1409.4950 without restraints) Performing minimization step: 2778. Total energy = 1414.8056 kcal/mol (1409.3310 without restraints) Performing minimization step: 2779. Total energy = 1414.6406 kcal/mol (1409.1674 without restraints) Performing minimization step: 2780. Total energy = 1414.4757 kcal/mol (1409.0039 without restraints) Performing minimization step: 2781. Total energy = 1414.3112 kcal/mol (1408.8408 without restraints) Performing minimization step: 2782. Total energy = 1414.1467 kcal/mol (1408.6776 without restraints) Performing minimization step: 2783. Total energy = 1413.9827 kcal/mol (1408.5150 without restraints) Performing minimization step: 2784. Total energy = 1413.8188 kcal/mol (1408.3525 without restraints) Performing minimization step: 2785. Total energy = 1413.6552 kcal/mol (1408.1904 without restraints) Performing minimization step: 2786. Total energy = 1413.4919 kcal/mol (1408.0283 without restraints) Performing minimization step: 2787. Total energy = 1413.3284 kcal/mol (1407.8663 without restraints) Performing minimization step: 2788. Total energy = 1413.1654 kcal/mol (1407.7046 without restraints) Performing minimization step: 2789. Total energy = 1413.0025 kcal/mol (1407.5431 without restraints) Performing minimization step: 2790. Total energy = 1412.8400 kcal/mol (1407.3820 without restraints) Performing minimization step: 2791. Total energy = 1412.6778 kcal/mol (1407.2211 without restraints) Performing minimization step: 2792. Total energy = 1412.5158 kcal/mol (1407.0605 without restraints) Performing minimization step: 2793. Total energy = 1412.3540 kcal/mol (1406.9001 without restraints) Performing minimization step: 2794. Total energy = 1412.1923 kcal/mol (1406.7396 without restraints) Performing minimization step: 2795. Total energy = 1412.0309 kcal/mol (1406.5797 without restraints) Performing minimization step: 2796. Total energy = 1411.8699 kcal/mol (1406.4200 without restraints) Performing minimization step: 2797. Total energy = 1411.7090 kcal/mol (1406.2604 without restraints) Performing minimization step: 2798. Total energy = 1411.5485 kcal/mol (1406.1013 without restraints) Performing minimization step: 2799. Total energy = 1411.3882 kcal/mol (1405.9424 without restraints) Performing minimization step: 2800. Total energy = 1411.2282 kcal/mol (1405.7837 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 1411.0684 kcal/mol (1405.6252 without restraints) Performing minimization step: 2802. Total energy = 1410.9088 kcal/mol (1405.4670 without restraints) Performing minimization step: 2803. Total energy = 1410.7496 kcal/mol (1405.3092 without restraints) Performing minimization step: 2804. Total energy = 1410.5906 kcal/mol (1405.1515 without restraints) Performing minimization step: 2805. Total energy = 1410.4317 kcal/mol (1404.9939 without restraints) Performing minimization step: 2806. Total energy = 1410.2731 kcal/mol (1404.8366 without restraints) Performing minimization step: 2807. Total energy = 1410.1147 kcal/mol (1404.6796 without restraints) Performing minimization step: 2808. Total energy = 1409.9562 kcal/mol (1404.5223 without restraints) Performing minimization step: 2809. Total energy = 1409.7982 kcal/mol (1404.3657 without restraints) Performing minimization step: 2810. Total energy = 1409.6407 kcal/mol (1404.2096 without restraints) Performing minimization step: 2811. Total energy = 1409.4833 kcal/mol (1404.0534 without restraints) Performing minimization step: 2812. Total energy = 1409.3259 kcal/mol (1403.8973 without restraints) Performing minimization step: 2813. Total energy = 1409.1689 kcal/mol (1403.7417 without restraints) Performing minimization step: 2814. Total energy = 1409.0123 kcal/mol (1403.5864 without restraints) Performing minimization step: 2815. Total energy = 1408.8558 kcal/mol (1403.4312 without restraints) Performing minimization step: 2816. Total energy = 1408.6991 kcal/mol (1403.2758 without restraints) Performing minimization step: 2817. Total energy = 1408.5430 kcal/mol (1403.1210 without restraints) Performing minimization step: 2818. Total energy = 1408.3873 kcal/mol (1402.9666 without restraints) Performing minimization step: 2819. Total energy = 1408.2316 kcal/mol (1402.8123 without restraints) Performing minimization step: 2820. Total energy = 1408.0763 kcal/mol (1402.6582 without restraints) Performing minimization step: 2821. Total energy = 1407.9215 kcal/mol (1402.5047 without restraints) Performing minimization step: 2822. Total energy = 1407.7668 kcal/mol (1402.3514 without restraints) Performing minimization step: 2823. Total energy = 1407.6122 kcal/mol (1402.1981 without restraints) Performing minimization step: 2824. Total energy = 1407.4576 kcal/mol (1402.0448 without restraints) Performing minimization step: 2825. Total energy = 1407.3035 kcal/mol (1401.8919 without restraints) Performing minimization step: 2826. Total energy = 1407.1495 kcal/mol (1401.7392 without restraints) Performing minimization step: 2827. Total energy = 1406.9956 kcal/mol (1401.5866 without restraints) Performing minimization step: 2828. Total energy = 1406.8420 kcal/mol (1401.4343 without restraints) Performing minimization step: 2829. Total energy = 1406.6886 kcal/mol (1401.2820 without restraints) Performing minimization step: 2830. Total energy = 1406.5354 kcal/mol (1401.1302 without restraints) Performing minimization step: 2831. Total energy = 1406.3825 kcal/mol (1400.9786 without restraints) Performing minimization step: 2832. Total energy = 1406.2298 kcal/mol (1400.8271 without restraints) Performing minimization step: 2833. Total energy = 1406.0773 kcal/mol (1400.6760 without restraints) Performing minimization step: 2834. Total energy = 1405.9251 kcal/mol (1400.5250 without restraints) Performing minimization step: 2835. Total energy = 1405.7731 kcal/mol (1400.3743 without restraints) Performing minimization step: 2836. Total energy = 1405.6213 kcal/mol (1400.2238 without restraints) Performing minimization step: 2837. Total energy = 1405.4698 kcal/mol (1400.0735 without restraints) Performing minimization step: 2838. Total energy = 1405.3185 kcal/mol (1399.9235 without restraints) Performing minimization step: 2839. Total energy = 1405.1674 kcal/mol (1399.7736 without restraints) Performing minimization step: 2840. Total energy = 1405.0165 kcal/mol (1399.6240 without restraints) Performing minimization step: 2841. Total energy = 1404.8658 kcal/mol (1399.4745 without restraints) Performing minimization step: 2842. Total energy = 1404.7153 kcal/mol (1399.3253 without restraints) Performing minimization step: 2843. Total energy = 1404.5651 kcal/mol (1399.1763 without restraints) Performing minimization step: 2844. Total energy = 1404.4151 kcal/mol (1399.0276 without restraints) Performing minimization step: 2845. Total energy = 1404.2650 kcal/mol (1398.8788 without restraints) Performing minimization step: 2846. Total energy = 1404.1157 kcal/mol (1398.7307 without restraints) Performing minimization step: 2847. Total energy = 1403.9667 kcal/mol (1398.5830 without restraints) Performing minimization step: 2848. Total energy = 1403.8176 kcal/mol (1398.4351 without restraints) Performing minimization step: 2849. Total energy = 1403.6687 kcal/mol (1398.2874 without restraints) Performing minimization step: 2850. Total energy = 1403.5199 kcal/mol (1398.1399 without restraints) Performing minimization step: 2851. Total energy = 1403.3714 kcal/mol (1397.9926 without restraints) Performing minimization step: 2852. Total energy = 1403.2229 kcal/mol (1397.8453 without restraints) Performing minimization step: 2853. Total energy = 1403.0749 kcal/mol (1397.6985 without restraints) Performing minimization step: 2854. Total energy = 1402.9270 kcal/mol (1397.5519 without restraints) Performing minimization step: 2855. Total energy = 1402.7797 kcal/mol (1397.4058 without restraints) Performing minimization step: 2856. Total energy = 1402.6323 kcal/mol (1397.2597 without restraints) Performing minimization step: 2857. Total energy = 1402.4852 kcal/mol (1397.1137 without restraints) Performing minimization step: 2858. Total energy = 1402.3382 kcal/mol (1396.9679 without restraints) Performing minimization step: 2859. Total energy = 1402.1914 kcal/mol (1396.8223 without restraints) Performing minimization step: 2860. Total energy = 1402.0447 kcal/mol (1396.6767 without restraints) Performing minimization step: 2861. Total energy = 1401.8983 kcal/mol (1396.5318 without restraints) Performing minimization step: 2862. Total energy = 1401.7521 kcal/mol (1396.3866 without restraints) Performing minimization step: 2863. Total energy = 1401.6061 kcal/mol (1396.2419 without restraints) Performing minimization step: 2864. Total energy = 1401.4604 kcal/mol (1396.0973 without restraints) Performing minimization step: 2865. Total energy = 1401.3148 kcal/mol (1395.9530 without restraints) Performing minimization step: 2866. Total energy = 1401.1694 kcal/mol (1395.8088 without restraints) Performing minimization step: 2867. Total energy = 1401.0242 kcal/mol (1395.6647 without restraints) Performing minimization step: 2868. Total energy = 1400.8794 kcal/mol (1395.5211 without restraints) Performing minimization step: 2869. Total energy = 1400.7346 kcal/mol (1395.3776 without restraints) Performing minimization step: 2870. Total energy = 1400.5901 kcal/mol (1395.2343 without restraints) Performing minimization step: 2871. Total energy = 1400.4459 kcal/mol (1395.0912 without restraints) Performing minimization step: 2872. Total energy = 1400.3018 kcal/mol (1394.9483 without restraints) Performing minimization step: 2873. Total energy = 1400.1579 kcal/mol (1394.8056 without restraints) Performing minimization step: 2874. Total energy = 1400.0141 kcal/mol (1394.6628 without restraints) Performing minimization step: 2875. Total energy = 1399.8705 kcal/mol (1394.5205 without restraints) Performing minimization step: 2876. Total energy = 1399.7272 kcal/mol (1394.3785 without restraints) Performing minimization step: 2877. Total energy = 1399.5841 kcal/mol (1394.2365 without restraints) Performing minimization step: 2878. Total energy = 1399.4410 kcal/mol (1394.0946 without restraints) Performing minimization step: 2879. Total energy = 1399.2984 kcal/mol (1393.9531 without restraints) Performing minimization step: 2880. Total energy = 1399.1559 kcal/mol (1393.8118 without restraints) Performing minimization step: 2881. Total energy = 1399.0133 kcal/mol (1393.6703 without restraints) Performing minimization step: 2882. Total energy = 1398.8712 kcal/mol (1393.5294 without restraints) Performing minimization step: 2883. Total energy = 1398.7295 kcal/mol (1393.3889 without restraints) Performing minimization step: 2884. Total energy = 1398.5879 kcal/mol (1393.2484 without restraints) Performing minimization step: 2885. Total energy = 1398.4464 kcal/mol (1393.1081 without restraints) Performing minimization step: 2886. Total energy = 1398.3051 kcal/mol (1392.9680 without restraints) Performing minimization step: 2887. Total energy = 1398.1641 kcal/mol (1392.8280 without restraints) Performing minimization step: 2888. Total energy = 1398.0234 kcal/mol (1392.6886 without restraints) Performing minimization step: 2889. Total energy = 1397.8828 kcal/mol (1392.5491 without restraints) Performing minimization step: 2890. Total energy = 1397.7429 kcal/mol (1392.4103 without restraints) Performing minimization step: 2891. Total energy = 1397.6023 kcal/mol (1392.2709 without restraints) Performing minimization step: 2892. Total energy = 1397.4623 kcal/mol (1392.1320 without restraints) Performing minimization step: 2893. Total energy = 1397.3225 kcal/mol (1391.9933 without restraints) Performing minimization step: 2894. Total energy = 1397.1825 kcal/mol (1391.8543 without restraints) Performing minimization step: 2895. Total energy = 1397.0429 kcal/mol (1391.7160 without restraints) Performing minimization step: 2896. Total energy = 1396.9036 kcal/mol (1391.5779 without restraints) Performing minimization step: 2897. Total energy = 1396.7646 kcal/mol (1391.4399 without restraints) Performing minimization step: 2898. Total energy = 1396.6255 kcal/mol (1391.3019 without restraints) Performing minimization step: 2899. Total energy = 1396.4865 kcal/mol (1391.1641 without restraints) Performing minimization step: 2900. Total energy = 1396.3480 kcal/mol (1391.0267 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 1396.2099 kcal/mol (1390.8898 without restraints) Performing minimization step: 2902. Total energy = 1396.0715 kcal/mol (1390.7524 without restraints) Performing minimization step: 2903. Total energy = 1395.9336 kcal/mol (1390.6156 without restraints) Performing minimization step: 2904. Total energy = 1395.7961 kcal/mol (1390.4792 without restraints) Performing minimization step: 2905. Total energy = 1395.6585 kcal/mol (1390.3428 without restraints) Performing minimization step: 2906. Total energy = 1395.5210 kcal/mol (1390.2064 without restraints) Performing minimization step: 2907. Total energy = 1395.3838 kcal/mol (1390.0701 without restraints) Performing minimization step: 2908. Total energy = 1395.2469 kcal/mol (1389.9345 without restraints) Performing minimization step: 2909. Total energy = 1395.1104 kcal/mol (1389.7991 without restraints) Performing minimization step: 2910. Total energy = 1394.9736 kcal/mol (1389.6634 without restraints) Performing minimization step: 2911. Total energy = 1394.8370 kcal/mol (1389.5278 without restraints) Performing minimization step: 2912. Total energy = 1394.7008 kcal/mol (1389.3927 without restraints) Performing minimization step: 2913. Total energy = 1394.5646 kcal/mol (1389.2575 without restraints) Performing minimization step: 2914. Total energy = 1394.4289 kcal/mol (1389.1230 without restraints) Performing minimization step: 2915. Total energy = 1394.2935 kcal/mol (1388.9887 without restraints) Performing minimization step: 2916. Total energy = 1394.1581 kcal/mol (1388.8544 without restraints) Performing minimization step: 2917. Total energy = 1394.0227 kcal/mol (1388.7198 without restraints) Performing minimization step: 2918. Total energy = 1393.8874 kcal/mol (1388.5858 without restraints) Performing minimization step: 2919. Total energy = 1393.7525 kcal/mol (1388.4520 without restraints) Performing minimization step: 2920. Total energy = 1393.6178 kcal/mol (1388.3182 without restraints) Performing minimization step: 2921. Total energy = 1393.4831 kcal/mol (1388.1846 without restraints) Performing minimization step: 2922. Total energy = 1393.3488 kcal/mol (1388.0516 without restraints) Performing minimization step: 2923. Total energy = 1393.2146 kcal/mol (1387.9184 without restraints) Performing minimization step: 2924. Total energy = 1393.0807 kcal/mol (1387.7855 without restraints) Performing minimization step: 2925. Total energy = 1392.9469 kcal/mol (1387.6528 without restraints) Performing minimization step: 2926. Total energy = 1392.8134 kcal/mol (1387.5203 without restraints) Performing minimization step: 2927. Total energy = 1392.6800 kcal/mol (1387.3880 without restraints) Performing minimization step: 2928. Total energy = 1392.5470 kcal/mol (1387.2561 without restraints) Performing minimization step: 2929. Total energy = 1392.4140 kcal/mol (1387.1241 without restraints) Performing minimization step: 2930. Total energy = 1392.2812 kcal/mol (1386.9924 without restraints) Performing minimization step: 2931. Total energy = 1392.1488 kcal/mol (1386.8610 without restraints) Performing minimization step: 2932. Total energy = 1392.0164 kcal/mol (1386.7296 without restraints) Performing minimization step: 2933. Total energy = 1391.8839 kcal/mol (1386.5982 without restraints) Performing minimization step: 2934. Total energy = 1391.7518 kcal/mol (1386.4672 without restraints) Performing minimization step: 2935. Total energy = 1391.6197 kcal/mol (1386.3361 without restraints) Performing minimization step: 2936. Total energy = 1391.4882 kcal/mol (1386.2056 without restraints) Performing minimization step: 2937. Total energy = 1391.3568 kcal/mol (1386.0752 without restraints) Performing minimization step: 2938. Total energy = 1391.2251 kcal/mol (1385.9445 without restraints) Performing minimization step: 2939. Total energy = 1391.0936 kcal/mol (1385.8141 without restraints) Performing minimization step: 2940. Total energy = 1390.9626 kcal/mol (1385.6841 without restraints) Performing minimization step: 2941. Total energy = 1390.8323 kcal/mol (1385.5548 without restraints) Performing minimization step: 2942. Total energy = 1390.7015 kcal/mol (1385.4250 without restraints) Performing minimization step: 2943. Total energy = 1390.5710 kcal/mol (1385.2955 without restraints) Performing minimization step: 2944. Total energy = 1390.4407 kcal/mol (1385.1663 without restraints) Performing minimization step: 2945. Total energy = 1390.3106 kcal/mol (1385.0372 without restraints) Performing minimization step: 2946. Total energy = 1390.1804 kcal/mol (1384.9080 without restraints) Performing minimization step: 2947. Total energy = 1390.0509 kcal/mol (1384.7795 without restraints) Performing minimization step: 2948. Total energy = 1389.9216 kcal/mol (1384.6511 without restraints) Performing minimization step: 2949. Total energy = 1389.7925 kcal/mol (1384.5231 without restraints) Performing minimization step: 2950. Total energy = 1389.6634 kcal/mol (1384.3950 without restraints) Performing minimization step: 2951. Total energy = 1389.5346 kcal/mol (1384.2672 without restraints) Performing minimization step: 2952. Total energy = 1389.4056 kcal/mol (1384.1391 without restraints) Performing minimization step: 2953. Total energy = 1389.2768 kcal/mol (1384.0114 without restraints) Performing minimization step: 2954. Total energy = 1389.1482 kcal/mol (1383.8839 without restraints) Performing minimization step: 2955. Total energy = 1389.0199 kcal/mol (1383.7565 without restraints) Performing minimization step: 2956. Total energy = 1388.8919 kcal/mol (1383.6295 without restraints) Performing minimization step: 2957. Total energy = 1388.7640 kcal/mol (1383.5025 without restraints) Performing minimization step: 2958. Total energy = 1388.6362 kcal/mol (1383.3757 without restraints) Performing minimization step: 2959. Total energy = 1388.5085 kcal/mol (1383.2491 without restraints) Performing minimization step: 2960. Total energy = 1388.3807 kcal/mol (1383.1222 without restraints) Performing minimization step: 2961. Total energy = 1388.2534 kcal/mol (1382.9959 without restraints) Performing minimization step: 2962. Total energy = 1388.1263 kcal/mol (1382.8697 without restraints) Performing minimization step: 2963. Total energy = 1387.9994 kcal/mol (1382.7438 without restraints) Performing minimization step: 2964. Total energy = 1387.8726 kcal/mol (1382.6179 without restraints) Performing minimization step: 2965. Total energy = 1387.7459 kcal/mol (1382.4923 without restraints) Performing minimization step: 2966. Total energy = 1387.6193 kcal/mol (1382.3666 without restraints) Performing minimization step: 2967. Total energy = 1387.4931 kcal/mol (1382.2414 without restraints) Performing minimization step: 2968. Total energy = 1387.3670 kcal/mol (1382.1162 without restraints) Performing minimization step: 2969. Total energy = 1387.2410 kcal/mol (1381.9911 without restraints) Performing minimization step: 2970. Total energy = 1387.1152 kcal/mol (1381.8663 without restraints) Performing minimization step: 2971. Total energy = 1386.9893 kcal/mol (1381.7414 without restraints) Performing minimization step: 2972. Total energy = 1386.8639 kcal/mol (1381.6169 without restraints) Performing minimization step: 2973. Total energy = 1386.7387 kcal/mol (1381.4927 without restraints) Performing minimization step: 2974. Total energy = 1386.6137 kcal/mol (1381.3686 without restraints) Performing minimization step: 2975. Total energy = 1386.4886 kcal/mol (1381.2444 without restraints) Performing minimization step: 2976. Total energy = 1386.3638 kcal/mol (1381.1206 without restraints) Performing minimization step: 2977. Total energy = 1386.2392 kcal/mol (1380.9969 without restraints) Performing minimization step: 2978. Total energy = 1386.1148 kcal/mol (1380.8735 without restraints) Performing minimization step: 2979. Total energy = 1385.9906 kcal/mol (1380.7502 without restraints) Performing minimization step: 2980. Total energy = 1385.8665 kcal/mol (1380.6271 without restraints) Performing minimization step: 2981. Total energy = 1385.7427 kcal/mol (1380.5042 without restraints) Performing minimization step: 2982. Total energy = 1385.6190 kcal/mol (1380.3813 without restraints) Performing minimization step: 2983. Total energy = 1385.4955 kcal/mol (1380.2588 without restraints) Performing minimization step: 2984. Total energy = 1385.3723 kcal/mol (1380.1365 without restraints) Performing minimization step: 2985. Total energy = 1385.2491 kcal/mol (1380.0142 without restraints) Performing minimization step: 2986. Total energy = 1385.1262 kcal/mol (1379.8923 without restraints) Performing minimization step: 2987. Total energy = 1385.0035 kcal/mol (1379.7706 without restraints) Performing minimization step: 2988. Total energy = 1384.8809 kcal/mol (1379.6488 without restraints) Performing minimization step: 2989. Total energy = 1384.7584 kcal/mol (1379.5272 without restraints) Performing minimization step: 2990. Total energy = 1384.6361 kcal/mol (1379.4057 without restraints) Performing minimization step: 2991. Total energy = 1384.5140 kcal/mol (1379.2846 without restraints) Performing minimization step: 2992. Total energy = 1384.3920 kcal/mol (1379.1635 without restraints) Performing minimization step: 2993. Total energy = 1384.2701 kcal/mol (1379.0425 without restraints) Performing minimization step: 2994. Total energy = 1384.1481 kcal/mol (1378.9214 without restraints) Performing minimization step: 2995. Total energy = 1384.0266 kcal/mol (1378.8007 without restraints) Performing minimization step: 2996. Total energy = 1383.9052 kcal/mol (1378.6802 without restraints) Performing minimization step: 2997. Total energy = 1383.7839 kcal/mol (1378.5599 without restraints) Performing minimization step: 2998. Total energy = 1383.6628 kcal/mol (1378.4397 without restraints) Performing minimization step: 2999. Total energy = 1383.5419 kcal/mol (1378.3196 without restraints) Performing minimization step: 3000. Total energy = 1383.4212 kcal/mol (1378.1998 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 1383.3006 kcal/mol (1378.0801 without restraints) Performing minimization step: 3002. Total energy = 1383.1801 kcal/mol (1377.9603 without restraints) Performing minimization step: 3003. Total energy = 1383.0594 kcal/mol (1377.8407 without restraints) Performing minimization step: 3004. Total energy = 1382.9391 kcal/mol (1377.7212 without restraints) Performing minimization step: 3005. Total energy = 1382.8189 kcal/mol (1377.6019 without restraints) Performing minimization step: 3006. Total energy = 1382.6991 kcal/mol (1377.4830 without restraints) Performing minimization step: 3007. Total energy = 1382.5797 kcal/mol (1377.3644 without restraints) Performing minimization step: 3008. Total energy = 1382.4604 kcal/mol (1377.2460 without restraints) Performing minimization step: 3009. Total energy = 1382.3410 kcal/mol (1377.1275 without restraints) Performing minimization step: 3010. Total energy = 1382.2218 kcal/mol (1377.0090 without restraints) Performing minimization step: 3011. Total energy = 1382.1027 kcal/mol (1376.8909 without restraints) Performing minimization step: 3012. Total energy = 1381.9836 kcal/mol (1376.7726 without restraints) Performing minimization step: 3013. Total energy = 1381.8650 kcal/mol (1376.6549 without restraints) Performing minimization step: 3014. Total energy = 1381.7466 kcal/mol (1376.5372 without restraints) Performing minimization step: 3015. Total energy = 1381.6283 kcal/mol (1376.4197 without restraints) Performing minimization step: 3016. Total energy = 1381.5099 kcal/mol (1376.3023 without restraints) Performing minimization step: 3017. Total energy = 1381.3914 kcal/mol (1376.1847 without restraints) Performing minimization step: 3018. Total energy = 1381.2735 kcal/mol (1376.0676 without restraints) Performing minimization step: 3019. Total energy = 1381.1559 kcal/mol (1375.9509 without restraints) Performing minimization step: 3020. Total energy = 1381.0384 kcal/mol (1375.8341 without restraints) Performing minimization step: 3021. Total energy = 1380.9210 kcal/mol (1375.7176 without restraints) Performing minimization step: 3022. Total energy = 1380.8034 kcal/mol (1375.6008 without restraints) Performing minimization step: 3023. Total energy = 1380.6862 kcal/mol (1375.4843 without restraints) Performing minimization step: 3024. Total energy = 1380.5691 kcal/mol (1375.3681 without restraints) Performing minimization step: 3025. Total energy = 1380.4523 kcal/mol (1375.2521 without restraints) Performing minimization step: 3026. Total energy = 1380.3356 kcal/mol (1375.1363 without restraints) Performing minimization step: 3027. Total energy = 1380.2191 kcal/mol (1375.0206 without restraints) Performing minimization step: 3028. Total energy = 1380.1025 kcal/mol (1374.9048 without restraints) Performing minimization step: 3029. Total energy = 1379.9863 kcal/mol (1374.7894 without restraints) Performing minimization step: 3030. Total energy = 1379.8702 kcal/mol (1374.6742 without restraints) Performing minimization step: 3031. Total energy = 1379.7539 kcal/mol (1374.5587 without restraints) Performing minimization step: 3032. Total energy = 1379.6381 kcal/mol (1374.4437 without restraints) Performing minimization step: 3033. Total energy = 1379.5224 kcal/mol (1374.3286 without restraints) Performing minimization step: 3034. Total energy = 1379.4068 kcal/mol (1374.2140 without restraints) Performing minimization step: 3035. Total energy = 1379.2915 kcal/mol (1374.0995 without restraints) Performing minimization step: 3036. Total energy = 1379.1766 kcal/mol (1373.9853 without restraints) Performing minimization step: 3037. Total energy = 1379.0616 kcal/mol (1373.8712 without restraints) Performing minimization step: 3038. Total energy = 1378.9467 kcal/mol (1373.7571 without restraints) Performing minimization step: 3039. Total energy = 1378.8320 kcal/mol (1373.6432 without restraints) Performing minimization step: 3040. Total energy = 1378.7174 kcal/mol (1373.5294 without restraints) Performing minimization step: 3041. Total energy = 1378.6030 kcal/mol (1373.4158 without restraints) Performing minimization step: 3042. Total energy = 1378.4890 kcal/mol (1373.3025 without restraints) Performing minimization step: 3043. Total energy = 1378.3749 kcal/mol (1373.1892 without restraints) Performing minimization step: 3044. Total energy = 1378.2609 kcal/mol (1373.0760 without restraints) Performing minimization step: 3045. Total energy = 1378.1471 kcal/mol (1372.9629 without restraints) Performing minimization step: 3046. Total energy = 1378.0332 kcal/mol (1372.8498 without restraints) Performing minimization step: 3047. Total energy = 1377.9195 kcal/mol (1372.7368 without restraints) Performing minimization step: 3048. Total energy = 1377.8061 kcal/mol (1372.6242 without restraints) Performing minimization step: 3049. Total energy = 1377.6928 kcal/mol (1372.5118 without restraints) Performing minimization step: 3050. Total energy = 1377.5797 kcal/mol (1372.3994 without restraints) Performing minimization step: 3051. Total energy = 1377.4662 kcal/mol (1372.2867 without restraints) Performing minimization step: 3052. Total energy = 1377.3532 kcal/mol (1372.1744 without restraints) Performing minimization step: 3053. Total energy = 1377.2403 kcal/mol (1372.0622 without restraints) Performing minimization step: 3054. Total energy = 1377.1277 kcal/mol (1371.9504 without restraints) Performing minimization step: 3055. Total energy = 1377.0153 kcal/mol (1371.8388 without restraints) Performing minimization step: 3056. Total energy = 1376.9031 kcal/mol (1371.7273 without restraints) Performing minimization step: 3057. Total energy = 1376.7913 kcal/mol (1371.6163 without restraints) Performing minimization step: 3058. Total energy = 1376.6793 kcal/mol (1371.5050 without restraints) Performing minimization step: 3059. Total energy = 1376.5675 kcal/mol (1371.3940 without restraints) Performing minimization step: 3060. Total energy = 1376.4558 kcal/mol (1371.2831 without restraints) Performing minimization step: 3061. Total energy = 1376.3443 kcal/mol (1371.1723 without restraints) Performing minimization step: 3062. Total energy = 1376.2330 kcal/mol (1371.0617 without restraints) Performing minimization step: 3063. Total energy = 1376.1218 kcal/mol (1370.9512 without restraints) Performing minimization step: 3064. Total energy = 1376.0104 kcal/mol (1370.8404 without restraints) Performing minimization step: 3065. Total energy = 1375.8993 kcal/mol (1370.7302 without restraints) Performing minimization step: 3066. Total energy = 1375.7886 kcal/mol (1370.6202 without restraints) Performing minimization step: 3067. Total energy = 1375.6778 kcal/mol (1370.5101 without restraints) Performing minimization step: 3068. Total energy = 1375.5677 kcal/mol (1370.4007 without restraints) Performing minimization step: 3069. Total energy = 1375.4573 kcal/mol (1370.2911 without restraints) Performing minimization step: 3070. Total energy = 1375.3472 kcal/mol (1370.1818 without restraints) Performing minimization step: 3071. Total energy = 1375.2372 kcal/mol (1370.0724 without restraints) Performing minimization step: 3072. Total energy = 1375.1273 kcal/mol (1369.9632 without restraints) Performing minimization step: 3073. Total energy = 1375.0170 kcal/mol (1369.8536 without restraints) Performing minimization step: 3074. Total energy = 1374.9073 kcal/mol (1369.7447 without restraints) Performing minimization step: 3075. Total energy = 1374.7975 kcal/mol (1369.6355 without restraints) Performing minimization step: 3076. Total energy = 1374.6883 kcal/mol (1369.5272 without restraints) Performing minimization step: 3077. Total energy = 1374.5797 kcal/mol (1369.4191 without restraints) Performing minimization step: 3078. Total energy = 1374.4708 kcal/mol (1369.3110 without restraints) Performing minimization step: 3079. Total energy = 1374.3617 kcal/mol (1369.2025 without restraints) Performing minimization step: 3080. Total energy = 1374.2526 kcal/mol (1369.0942 without restraints) Performing minimization step: 3081. Total energy = 1374.1440 kcal/mol (1368.9862 without restraints) Performing minimization step: 3082. Total energy = 1374.0352 kcal/mol (1368.8781 without restraints) Performing minimization step: 3083. Total energy = 1373.9272 kcal/mol (1368.7708 without restraints) Performing minimization step: 3084. Total energy = 1373.8189 kcal/mol (1368.6632 without restraints) Performing minimization step: 3085. Total energy = 1373.7108 kcal/mol (1368.5558 without restraints) Performing minimization step: 3086. Total energy = 1373.6028 kcal/mol (1368.4484 without restraints) Performing minimization step: 3087. Total energy = 1373.4948 kcal/mol (1368.3412 without restraints) Performing minimization step: 3088. Total energy = 1373.3877 kcal/mol (1368.2348 without restraints) Performing minimization step: 3089. Total energy = 1373.2798 kcal/mol (1368.1274 without restraints) Performing minimization step: 3090. Total energy = 1373.1722 kcal/mol (1368.0206 without restraints) Performing minimization step: 3091. Total energy = 1373.0647 kcal/mol (1367.9138 without restraints) Performing minimization step: 3092. Total energy = 1372.9575 kcal/mol (1367.8072 without restraints) Performing minimization step: 3093. Total energy = 1372.8507 kcal/mol (1367.7011 without restraints) Performing minimization step: 3094. Total energy = 1372.7437 kcal/mol (1367.5946 without restraints) Performing minimization step: 3095. Total energy = 1372.6368 kcal/mol (1367.4885 without restraints) Performing minimization step: 3096. Total energy = 1372.5302 kcal/mol (1367.3825 without restraints) Performing minimization step: 3097. Total energy = 1372.4236 kcal/mol (1367.2766 without restraints) Performing minimization step: 3098. Total energy = 1372.3170 kcal/mol (1367.1707 without restraints) Performing minimization step: 3099. Total energy = 1372.2107 kcal/mol (1367.0651 without restraints) Performing minimization step: 3100. Total energy = 1372.1047 kcal/mol (1366.9597 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 1371.9988 kcal/mol (1366.8544 without restraints) Performing minimization step: 3102. Total energy = 1371.8928 kcal/mol (1366.7490 without restraints) Performing minimization step: 3103. Total energy = 1371.7868 kcal/mol (1366.6437 without restraints) Performing minimization step: 3104. Total energy = 1371.6812 kcal/mol (1366.5387 without restraints) Performing minimization step: 3105. Total energy = 1371.5758 kcal/mol (1366.4339 without restraints) Performing minimization step: 3106. Total energy = 1371.4704 kcal/mol (1366.3292 without restraints) Performing minimization step: 3107. Total energy = 1371.3652 kcal/mol (1366.2247 without restraints) Performing minimization step: 3108. Total energy = 1371.2602 kcal/mol (1366.1203 without restraints) Performing minimization step: 3109. Total energy = 1371.1552 kcal/mol (1366.0160 without restraints) Performing minimization step: 3110. Total energy = 1371.0505 kcal/mol (1365.9118 without restraints) Performing minimization step: 3111. Total energy = 1370.9459 kcal/mol (1365.8078 without restraints) Performing minimization step: 3112. Total energy = 1370.8413 kcal/mol (1365.7039 without restraints) Performing minimization step: 3113. Total energy = 1370.7367 kcal/mol (1365.5999 without restraints) Performing minimization step: 3114. Total energy = 1370.6325 kcal/mol (1365.4963 without restraints) Performing minimization step: 3115. Total energy = 1370.5283 kcal/mol (1365.3928 without restraints) Performing minimization step: 3116. Total energy = 1370.4241 kcal/mol (1365.2891 without restraints) Performing minimization step: 3117. Total energy = 1370.3198 kcal/mol (1365.1854 without restraints) Performing minimization step: 3118. Total energy = 1370.2158 kcal/mol (1365.0821 without restraints) Performing minimization step: 3119. Total energy = 1370.1122 kcal/mol (1364.9791 without restraints) Performing minimization step: 3120. Total energy = 1370.0089 kcal/mol (1364.8764 without restraints) Performing minimization step: 3121. Total energy = 1369.9057 kcal/mol (1364.7736 without restraints) Performing minimization step: 3122. Total energy = 1369.8023 kcal/mol (1364.6710 without restraints) Performing minimization step: 3123. Total energy = 1369.6992 kcal/mol (1364.5685 without restraints) Performing minimization step: 3124. Total energy = 1369.5958 kcal/mol (1364.4657 without restraints) Performing minimization step: 3125. Total energy = 1369.4930 kcal/mol (1364.3635 without restraints) Performing minimization step: 3126. Total energy = 1369.3903 kcal/mol (1364.2614 without restraints) Performing minimization step: 3127. Total energy = 1369.2877 kcal/mol (1364.1593 without restraints) Performing minimization step: 3128. Total energy = 1369.1854 kcal/mol (1364.0579 without restraints) Performing minimization step: 3129. Total energy = 1369.0835 kcal/mol (1363.9563 without restraints) Performing minimization step: 3130. Total energy = 1368.9812 kcal/mol (1363.8546 without restraints) Performing minimization step: 3131. Total energy = 1368.8790 kcal/mol (1363.7531 without restraints) Performing minimization step: 3132. Total energy = 1368.7772 kcal/mol (1363.6517 without restraints) Performing minimization step: 3133. Total energy = 1368.6751 kcal/mol (1363.5502 without restraints) Performing minimization step: 3134. Total energy = 1368.5734 kcal/mol (1363.4491 without restraints) Performing minimization step: 3135. Total energy = 1368.4716 kcal/mol (1363.3479 without restraints) Performing minimization step: 3136. Total energy = 1368.3701 kcal/mol (1363.2470 without restraints) Performing minimization step: 3137. Total energy = 1368.2685 kcal/mol (1363.1459 without restraints) Performing minimization step: 3138. Total energy = 1368.1671 kcal/mol (1363.0450 without restraints) Performing minimization step: 3139. Total energy = 1368.0659 kcal/mol (1362.9444 without restraints) Performing minimization step: 3140. Total energy = 1367.9650 kcal/mol (1362.8442 without restraints) Performing minimization step: 3141. Total energy = 1367.8640 kcal/mol (1362.7436 without restraints) Performing minimization step: 3142. Total energy = 1367.7630 kcal/mol (1362.6433 without restraints) Performing minimization step: 3143. Total energy = 1367.6624 kcal/mol (1362.5432 without restraints) Performing minimization step: 3144. Total energy = 1367.5619 kcal/mol (1362.4433 without restraints) Performing minimization step: 3145. Total energy = 1367.4616 kcal/mol (1362.3435 without restraints) Performing minimization step: 3146. Total energy = 1367.3613 kcal/mol (1362.2437 without restraints) Performing minimization step: 3147. Total energy = 1367.2612 kcal/mol (1362.1441 without restraints) Performing minimization step: 3148. Total energy = 1367.1610 kcal/mol (1362.0445 without restraints) Performing minimization step: 3149. Total energy = 1367.0615 kcal/mol (1361.9456 without restraints) Performing minimization step: 3150. Total energy = 1366.9617 kcal/mol (1361.8463 without restraints) Performing minimization step: 3151. Total energy = 1366.8621 kcal/mol (1361.7472 without restraints) Performing minimization step: 3152. Total energy = 1366.7625 kcal/mol (1361.6482 without restraints) Performing minimization step: 3153. Total energy = 1366.6631 kcal/mol (1361.5493 without restraints) Performing minimization step: 3154. Total energy = 1366.5638 kcal/mol (1361.4505 without restraints) Performing minimization step: 3155. Total energy = 1366.4644 kcal/mol (1361.3517 without restraints) Performing minimization step: 3156. Total energy = 1366.3652 kcal/mol (1361.2529 without restraints) Performing minimization step: 3157. Total energy = 1366.2660 kcal/mol (1361.1543 without restraints) Performing minimization step: 3158. Total energy = 1366.1672 kcal/mol (1361.0560 without restraints) Performing minimization step: 3159. Total energy = 1366.0685 kcal/mol (1360.9578 without restraints) Performing minimization step: 3160. Total energy = 1365.9699 kcal/mol (1360.8595 without restraints) Performing minimization step: 3161. Total energy = 1365.8712 kcal/mol (1360.7616 without restraints) Performing minimization step: 3162. Total energy = 1365.7726 kcal/mol (1360.6635 without restraints) Performing minimization step: 3163. Total energy = 1365.6741 kcal/mol (1360.5655 without restraints) Performing minimization step: 3164. Total energy = 1365.5758 kcal/mol (1360.4677 without restraints) Performing minimization step: 3165. Total energy = 1365.4778 kcal/mol (1360.3702 without restraints) Performing minimization step: 3166. Total energy = 1365.3806 kcal/mol (1360.2735 without restraints) Performing minimization step: 3167. Total energy = 1365.2831 kcal/mol (1360.1765 without restraints) Performing minimization step: 3168. Total energy = 1365.1854 kcal/mol (1360.0794 without restraints) Performing minimization step: 3169. Total energy = 1365.0880 kcal/mol (1359.9824 without restraints) Performing minimization step: 3170. Total energy = 1364.9905 kcal/mol (1359.8855 without restraints) Performing minimization step: 3171. Total energy = 1364.8933 kcal/mol (1359.7886 without restraints) Performing minimization step: 3172. Total energy = 1364.7960 kcal/mol (1359.6919 without restraints) Performing minimization step: 3173. Total energy = 1364.6987 kcal/mol (1359.5951 without restraints) Performing minimization step: 3174. Total energy = 1364.6018 kcal/mol (1359.4987 without restraints) Performing minimization step: 3175. Total energy = 1364.5052 kcal/mol (1359.4026 without restraints) Performing minimization step: 3176. Total energy = 1364.4081 kcal/mol (1359.3060 without restraints) Performing minimization step: 3177. Total energy = 1364.3115 kcal/mol (1359.2099 without restraints) Performing minimization step: 3178. Total energy = 1364.2148 kcal/mol (1359.1136 without restraints) Performing minimization step: 3179. Total energy = 1364.1186 kcal/mol (1359.0179 without restraints) Performing minimization step: 3180. Total energy = 1364.0223 kcal/mol (1358.9221 without restraints) Performing minimization step: 3181. Total energy = 1363.9262 kcal/mol (1358.8264 without restraints) Performing minimization step: 3182. Total energy = 1363.8301 kcal/mol (1358.7308 without restraints) Performing minimization step: 3183. Total energy = 1363.7344 kcal/mol (1358.6356 without restraints) Performing minimization step: 3184. Total energy = 1363.6386 kcal/mol (1358.5402 without restraints) Performing minimization step: 3185. Total energy = 1363.5431 kcal/mol (1358.4452 without restraints) Performing minimization step: 3186. Total energy = 1363.4475 kcal/mol (1358.3501 without restraints) Performing minimization step: 3187. Total energy = 1363.3521 kcal/mol (1358.2553 without restraints) Performing minimization step: 3188. Total energy = 1363.2564 kcal/mol (1358.1599 without restraints) Performing minimization step: 3189. Total energy = 1363.1611 kcal/mol (1358.0651 without restraints) Performing minimization step: 3190. Total energy = 1363.0663 kcal/mol (1357.9707 without restraints) Performing minimization step: 3191. Total energy = 1362.9714 kcal/mol (1357.8762 without restraints) Performing minimization step: 3192. Total energy = 1362.8764 kcal/mol (1357.7817 without restraints) Performing minimization step: 3193. Total energy = 1362.7816 kcal/mol (1357.6873 without restraints) Performing minimization step: 3194. Total energy = 1362.6870 kcal/mol (1357.5931 without restraints) Performing minimization step: 3195. Total energy = 1362.5922 kcal/mol (1357.4988 without restraints) Performing minimization step: 3196. Total energy = 1362.4975 kcal/mol (1357.4045 without restraints) Performing minimization step: 3197. Total energy = 1362.4027 kcal/mol (1357.3102 without restraints) Performing minimization step: 3198. Total energy = 1362.3084 kcal/mol (1357.2164 without restraints) Performing minimization step: 3199. Total energy = 1362.2145 kcal/mol (1357.1228 without restraints) Performing minimization step: 3200. Total energy = 1362.1202 kcal/mol (1357.0290 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 1362.0265 kcal/mol (1356.9357 without restraints) Performing minimization step: 3202. Total energy = 1361.9329 kcal/mol (1356.8425 without restraints) Performing minimization step: 3203. Total energy = 1361.8389 kcal/mol (1356.7490 without restraints) Performing minimization step: 3204. Total energy = 1361.7453 kcal/mol (1356.6558 without restraints) Performing minimization step: 3205. Total energy = 1361.6518 kcal/mol (1356.5627 without restraints) Performing minimization step: 3206. Total energy = 1361.5584 kcal/mol (1356.4698 without restraints) Performing minimization step: 3207. Total energy = 1361.4647 kcal/mol (1356.3765 without restraints) Performing minimization step: 3208. Total energy = 1361.3715 kcal/mol (1356.2837 without restraints) Performing minimization step: 3209. Total energy = 1361.2784 kcal/mol (1356.1910 without restraints) Performing minimization step: 3210. Total energy = 1361.1855 kcal/mol (1356.0985 without restraints) Performing minimization step: 3211. Total energy = 1361.0924 kcal/mol (1356.0058 without restraints) Performing minimization step: 3212. Total energy = 1360.9994 kcal/mol (1355.9132 without restraints) Performing minimization step: 3213. Total energy = 1360.9070 kcal/mol (1355.8212 without restraints) Performing minimization step: 3214. Total energy = 1360.8141 kcal/mol (1355.7288 without restraints) Performing minimization step: 3215. Total energy = 1360.7217 kcal/mol (1355.6367 without restraints) Performing minimization step: 3216. Total energy = 1360.6293 kcal/mol (1355.5447 without restraints) Performing minimization step: 3217. Total energy = 1360.5372 kcal/mol (1355.4531 without restraints) Performing minimization step: 3218. Total energy = 1360.4450 kcal/mol (1355.3612 without restraints) Performing minimization step: 3219. Total energy = 1360.3529 kcal/mol (1355.2695 without restraints) Performing minimization step: 3220. Total energy = 1360.2610 kcal/mol (1355.1780 without restraints) Performing minimization step: 3221. Total energy = 1360.1691 kcal/mol (1355.0865 without restraints) Performing minimization step: 3222. Total energy = 1360.0774 kcal/mol (1354.9952 without restraints) Performing minimization step: 3223. Total energy = 1359.9860 kcal/mol (1354.9042 without restraints) Performing minimization step: 3224. Total energy = 1359.8942 kcal/mol (1354.8127 without restraints) Performing minimization step: 3225. Total energy = 1359.8027 kcal/mol (1354.7217 without restraints) Performing minimization step: 3226. Total energy = 1359.7114 kcal/mol (1354.6307 without restraints) Performing minimization step: 3227. Total energy = 1359.6202 kcal/mol (1354.5399 without restraints) Performing minimization step: 3228. Total energy = 1359.5291 kcal/mol (1354.4491 without restraints) Performing minimization step: 3229. Total energy = 1359.4383 kcal/mol (1354.3587 without restraints) Performing minimization step: 3230. Total energy = 1359.3477 kcal/mol (1354.2685 without restraints) Performing minimization step: 3231. Total energy = 1359.2569 kcal/mol (1354.1780 without restraints) Performing minimization step: 3232. Total energy = 1359.1661 kcal/mol (1354.0877 without restraints) Performing minimization step: 3233. Total energy = 1359.0755 kcal/mol (1353.9975 without restraints) Performing minimization step: 3234. Total energy = 1358.9849 kcal/mol (1353.9072 without restraints) Performing minimization step: 3235. Total energy = 1358.8945 kcal/mol (1353.8172 without restraints) Performing minimization step: 3236. Total energy = 1358.8040 kcal/mol (1353.7270 without restraints) Performing minimization step: 3237. Total energy = 1358.7140 kcal/mol (1353.6374 without restraints) Performing minimization step: 3238. Total energy = 1358.6239 kcal/mol (1353.5476 without restraints) Performing minimization step: 3239. Total energy = 1358.5339 kcal/mol (1353.4579 without restraints) Performing minimization step: 3240. Total energy = 1358.4437 kcal/mol (1353.3681 without restraints) Performing minimization step: 3241. Total energy = 1358.3540 kcal/mol (1353.2787 without restraints) Performing minimization step: 3242. Total energy = 1358.2639 kcal/mol (1353.1888 without restraints) Performing minimization step: 3243. Total energy = 1358.1742 kcal/mol (1353.0996 without restraints) Performing minimization step: 3244. Total energy = 1358.0848 kcal/mol (1353.0107 without restraints) Performing minimization step: 3245. Total energy = 1357.9955 kcal/mol (1352.9217 without restraints) Performing minimization step: 3246. Total energy = 1357.9056 kcal/mol (1352.8321 without restraints) Performing minimization step: 3247. Total energy = 1357.8164 kcal/mol (1352.7432 without restraints) Performing minimization step: 3248. Total energy = 1357.7273 kcal/mol (1352.6544 without restraints) Performing minimization step: 3249. Total energy = 1357.6383 kcal/mol (1352.5657 without restraints) Performing minimization step: 3250. Total energy = 1357.5496 kcal/mol (1352.4774 without restraints) Performing minimization step: 3251. Total energy = 1357.4607 kcal/mol (1352.3889 without restraints) Performing minimization step: 3252. Total energy = 1357.3723 kcal/mol (1352.3007 without restraints) Performing minimization step: 3253. Total energy = 1357.2834 kcal/mol (1352.2121 without restraints) Performing minimization step: 3254. Total energy = 1357.1948 kcal/mol (1352.1239 without restraints) Performing minimization step: 3255. Total energy = 1357.1062 kcal/mol (1352.0356 without restraints) Performing minimization step: 3256. Total energy = 1357.0179 kcal/mol (1351.9477 without restraints) Performing minimization step: 3257. Total energy = 1356.9297 kcal/mol (1351.8598 without restraints) Performing minimization step: 3258. Total energy = 1356.8416 kcal/mol (1351.7720 without restraints) Performing minimization step: 3259. Total energy = 1356.7536 kcal/mol (1351.6843 without restraints) Performing minimization step: 3260. Total energy = 1356.6657 kcal/mol (1351.5967 without restraints) Performing minimization step: 3261. Total energy = 1356.5779 kcal/mol (1351.5092 without restraints) Performing minimization step: 3262. Total energy = 1356.4905 kcal/mol (1351.4220 without restraints) Performing minimization step: 3263. Total energy = 1356.4027 kcal/mol (1351.3346 without restraints) Performing minimization step: 3264. Total energy = 1356.3151 kcal/mol (1351.2474 without restraints) Performing minimization step: 3265. Total energy = 1356.2279 kcal/mol (1351.1604 without restraints) Performing minimization step: 3266. Total energy = 1356.1407 kcal/mol (1351.0736 without restraints) Performing minimization step: 3267. Total energy = 1356.0534 kcal/mol (1350.9865 without restraints) Performing minimization step: 3268. Total energy = 1355.9659 kcal/mol (1350.8993 without restraints) Performing minimization step: 3269. Total energy = 1355.8788 kcal/mol (1350.8126 without restraints) Performing minimization step: 3270. Total energy = 1355.7916 kcal/mol (1350.7257 without restraints) Performing minimization step: 3271. Total energy = 1355.7050 kcal/mol (1350.6393 without restraints) Performing minimization step: 3272. Total energy = 1355.6182 kcal/mol (1350.5528 without restraints) Performing minimization step: 3273. Total energy = 1355.5315 kcal/mol (1350.4664 without restraints) Performing minimization step: 3274. Total energy = 1355.4447 kcal/mol (1350.3799 without restraints) Performing minimization step: 3275. Total energy = 1355.3582 kcal/mol (1350.2936 without restraints) Performing minimization step: 3276. Total energy = 1355.2718 kcal/mol (1350.2075 without restraints) Performing minimization step: 3277. Total energy = 1355.1854 kcal/mol (1350.1215 without restraints) Performing minimization step: 3278. Total energy = 1355.0992 kcal/mol (1350.0355 without restraints) Performing minimization step: 3279. Total energy = 1355.0131 kcal/mol (1349.9497 without restraints) Performing minimization step: 3280. Total energy = 1354.9269 kcal/mol (1349.8637 without restraints) Performing minimization step: 3281. Total energy = 1354.8406 kcal/mol (1349.7777 without restraints) Performing minimization step: 3282. Total energy = 1354.7548 kcal/mol (1349.6922 without restraints) Performing minimization step: 3283. Total energy = 1354.6690 kcal/mol (1349.6066 without restraints) Performing minimization step: 3284. Total energy = 1354.5833 kcal/mol (1349.5213 without restraints) Performing minimization step: 3285. Total energy = 1354.4977 kcal/mol (1349.4358 without restraints) Performing minimization step: 3286. Total energy = 1354.4124 kcal/mol (1349.3509 without restraints) Performing minimization step: 3287. Total energy = 1354.3271 kcal/mol (1349.2658 without restraints) Performing minimization step: 3288. Total energy = 1354.2419 kcal/mol (1349.1809 without restraints) Performing minimization step: 3289. Total energy = 1354.1566 kcal/mol (1349.0957 without restraints) Performing minimization step: 3290. Total energy = 1354.0714 kcal/mol (1349.0108 without restraints) Performing minimization step: 3291. Total energy = 1353.9866 kcal/mol (1348.9263 without restraints) Performing minimization step: 3292. Total energy = 1353.9016 kcal/mol (1348.8416 without restraints) Performing minimization step: 3293. Total energy = 1353.8167 kcal/mol (1348.7570 without restraints) Performing minimization step: 3294. Total energy = 1353.7317 kcal/mol (1348.6722 without restraints) Performing minimization step: 3295. Total energy = 1353.6468 kcal/mol (1348.5875 without restraints) Performing minimization step: 3296. Total energy = 1353.5622 kcal/mol (1348.5031 without restraints) Performing minimization step: 3297. Total energy = 1353.4777 kcal/mol (1348.4189 without restraints) Performing minimization step: 3298. Total energy = 1353.3938 kcal/mol (1348.3352 without restraints) Performing minimization step: 3299. Total energy = 1353.3097 kcal/mol (1348.2514 without restraints) Performing minimization step: 3300. Total energy = 1353.2254 kcal/mol (1348.1673 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 1353.1417 kcal/mol (1348.0838 without restraints) Performing minimization step: 3302. Total energy = 1353.0576 kcal/mol (1348.0000 without restraints) Performing minimization step: 3303. Total energy = 1352.9736 kcal/mol (1347.9162 without restraints) Performing minimization step: 3304. Total energy = 1352.8898 kcal/mol (1347.8325 without restraints) Performing minimization step: 3305. Total energy = 1352.8059 kcal/mol (1347.7489 without restraints) Performing minimization step: 3306. Total energy = 1352.7219 kcal/mol (1347.6652 without restraints) Performing minimization step: 3307. Total energy = 1352.6383 kcal/mol (1347.5818 without restraints) Performing minimization step: 3308. Total energy = 1352.5547 kcal/mol (1347.4985 without restraints) Performing minimization step: 3309. Total energy = 1352.4714 kcal/mol (1347.4154 without restraints) Performing minimization step: 3310. Total energy = 1352.3880 kcal/mol (1347.3322 without restraints) Performing minimization step: 3311. Total energy = 1352.3045 kcal/mol (1347.2487 without restraints) Performing minimization step: 3312. Total energy = 1352.2211 kcal/mol (1347.1657 without restraints) Performing minimization step: 3313. Total energy = 1352.1379 kcal/mol (1347.0828 without restraints) Performing minimization step: 3314. Total energy = 1352.0547 kcal/mol (1346.9997 without restraints) Performing minimization step: 3315. Total energy = 1351.9717 kcal/mol (1346.9169 without restraints) Performing minimization step: 3316. Total energy = 1351.8890 kcal/mol (1346.8345 without restraints) Performing minimization step: 3317. Total energy = 1351.8061 kcal/mol (1346.7516 without restraints) Performing minimization step: 3318. Total energy = 1351.7233 kcal/mol (1346.6692 without restraints) Performing minimization step: 3319. Total energy = 1351.6407 kcal/mol (1346.5868 without restraints) Performing minimization step: 3320. Total energy = 1351.5582 kcal/mol (1346.5045 without restraints) Performing minimization step: 3321. Total energy = 1351.4758 kcal/mol (1346.4222 without restraints) Performing minimization step: 3322. Total energy = 1351.3936 kcal/mol (1346.3403 without restraints) Performing minimization step: 3323. Total energy = 1351.3116 kcal/mol (1346.2585 without restraints) Performing minimization step: 3324. Total energy = 1351.2294 kcal/mol (1346.1765 without restraints) Performing minimization step: 3325. Total energy = 1351.1473 kcal/mol (1346.0946 without restraints) Performing minimization step: 3326. Total energy = 1351.0653 kcal/mol (1346.0127 without restraints) Performing minimization step: 3327. Total energy = 1350.9834 kcal/mol (1345.9310 without restraints) Performing minimization step: 3328. Total energy = 1350.9014 kcal/mol (1345.8491 without restraints) Performing minimization step: 3329. Total energy = 1350.8199 kcal/mol (1345.7678 without restraints) Performing minimization step: 3330. Total energy = 1350.7383 kcal/mol (1345.6865 without restraints) Performing minimization step: 3331. Total energy = 1350.6568 kcal/mol (1345.6052 without restraints) Performing minimization step: 3332. Total energy = 1350.5755 kcal/mol (1345.5241 without restraints) Performing minimization step: 3333. Total energy = 1350.4941 kcal/mol (1345.4428 without restraints) Performing minimization step: 3334. Total energy = 1350.4129 kcal/mol (1345.3618 without restraints) Performing minimization step: 3335. Total energy = 1350.3316 kcal/mol (1345.2807 without restraints) Performing minimization step: 3336. Total energy = 1350.2504 kcal/mol (1345.1996 without restraints) Performing minimization step: 3337. Total energy = 1350.1693 kcal/mol (1345.1186 without restraints) Performing minimization step: 3338. Total energy = 1350.0882 kcal/mol (1345.0378 without restraints) Performing minimization step: 3339. Total energy = 1350.0073 kcal/mol (1344.9570 without restraints) Performing minimization step: 3340. Total energy = 1349.9264 kcal/mol (1344.8763 without restraints) Performing minimization step: 3341. Total energy = 1349.8456 kcal/mol (1344.7956 without restraints) Performing minimization step: 3342. Total energy = 1349.7652 kcal/mol (1344.7154 without restraints) Performing minimization step: 3343. Total energy = 1349.6846 kcal/mol (1344.6351 without restraints) Performing minimization step: 3344. Total energy = 1349.6040 kcal/mol (1344.5546 without restraints) Performing minimization step: 3345. Total energy = 1349.5235 kcal/mol (1344.4740 without restraints) Performing minimization step: 3346. Total energy = 1349.4430 kcal/mol (1344.3938 without restraints) Performing minimization step: 3347. Total energy = 1349.3627 kcal/mol (1344.3137 without restraints) Performing minimization step: 3348. Total energy = 1349.2826 kcal/mol (1344.2338 without restraints) Performing minimization step: 3349. Total energy = 1349.2022 kcal/mol (1344.1535 without restraints) Performing minimization step: 3350. Total energy = 1349.1221 kcal/mol (1344.0736 without restraints) Performing minimization step: 3351. Total energy = 1349.0424 kcal/mol (1343.9940 without restraints) Performing minimization step: 3352. Total energy = 1348.9625 kcal/mol (1343.9142 without restraints) Performing minimization step: 3353. Total energy = 1348.8828 kcal/mol (1343.8347 without restraints) Performing minimization step: 3354. Total energy = 1348.8031 kcal/mol (1343.7551 without restraints) Performing minimization step: 3355. Total energy = 1348.7236 kcal/mol (1343.6757 without restraints) Performing minimization step: 3356. Total energy = 1348.6440 kcal/mol (1343.5963 without restraints) Performing minimization step: 3357. Total energy = 1348.5647 kcal/mol (1343.5171 without restraints) Performing minimization step: 3358. Total energy = 1348.4850 kcal/mol (1343.4376 without restraints) Performing minimization step: 3359. Total energy = 1348.4055 kcal/mol (1343.3580 without restraints) Performing minimization step: 3360. Total energy = 1348.3260 kcal/mol (1343.2788 without restraints) Performing minimization step: 3361. Total energy = 1348.2466 kcal/mol (1343.1996 without restraints) Performing minimization step: 3362. Total energy = 1348.1672 kcal/mol (1343.1202 without restraints) Performing minimization step: 3363. Total energy = 1348.0881 kcal/mol (1343.0411 without restraints) Performing minimization step: 3364. Total energy = 1348.0090 kcal/mol (1342.9623 without restraints) Performing minimization step: 3365. Total energy = 1347.9301 kcal/mol (1342.8835 without restraints) Performing minimization step: 3366. Total energy = 1347.8512 kcal/mol (1342.8048 without restraints) Performing minimization step: 3367. Total energy = 1347.7727 kcal/mol (1342.7264 without restraints) Performing minimization step: 3368. Total energy = 1347.6939 kcal/mol (1342.6478 without restraints) Performing minimization step: 3369. Total energy = 1347.6155 kcal/mol (1342.5693 without restraints) Performing minimization step: 3370. Total energy = 1347.5368 kcal/mol (1342.4909 without restraints) Performing minimization step: 3371. Total energy = 1347.4584 kcal/mol (1342.4126 without restraints) Performing minimization step: 3372. Total energy = 1347.3799 kcal/mol (1342.3342 without restraints) Performing minimization step: 3373. Total energy = 1347.3013 kcal/mol (1342.2556 without restraints) Performing minimization step: 3374. Total energy = 1347.2230 kcal/mol (1342.1775 without restraints) Performing minimization step: 3375. Total energy = 1347.1447 kcal/mol (1342.0992 without restraints) Performing minimization step: 3376. Total energy = 1347.0666 kcal/mol (1342.0213 without restraints) Performing minimization step: 3377. Total energy = 1346.9883 kcal/mol (1341.9431 without restraints) Performing minimization step: 3378. Total energy = 1346.9105 kcal/mol (1341.8654 without restraints) Performing minimization step: 3379. Total energy = 1346.8325 kcal/mol (1341.7875 without restraints) Performing minimization step: 3380. Total energy = 1346.7547 kcal/mol (1341.7098 without restraints) Performing minimization step: 3381. Total energy = 1346.6771 kcal/mol (1341.6324 without restraints) Performing minimization step: 3382. Total energy = 1346.5996 kcal/mol (1341.5549 without restraints) Performing minimization step: 3383. Total energy = 1346.5221 kcal/mol (1341.4775 without restraints) Performing minimization step: 3384. Total energy = 1346.4446 kcal/mol (1341.4001 without restraints) Performing minimization step: 3385. Total energy = 1346.3672 kcal/mol (1341.3228 without restraints) Performing minimization step: 3386. Total energy = 1346.2897 kcal/mol (1341.2453 without restraints) Performing minimization step: 3387. Total energy = 1346.2124 kcal/mol (1341.1681 without restraints) Performing minimization step: 3388. Total energy = 1346.1353 kcal/mol (1341.0912 without restraints) Performing minimization step: 3389. Total energy = 1346.0584 kcal/mol (1341.0142 without restraints) Performing minimization step: 3390. Total energy = 1345.9813 kcal/mol (1340.9373 without restraints) Performing minimization step: 3391. Total energy = 1345.9041 kcal/mol (1340.8600 without restraints) Performing minimization step: 3392. Total energy = 1345.8270 kcal/mol (1340.7832 without restraints) Performing minimization step: 3393. Total energy = 1345.7504 kcal/mol (1340.7067 without restraints) Performing minimization step: 3394. Total energy = 1345.6737 kcal/mol (1340.6300 without restraints) Performing minimization step: 3395. Total energy = 1345.5971 kcal/mol (1340.5534 without restraints) Performing minimization step: 3396. Total energy = 1345.5202 kcal/mol (1340.4767 without restraints) Performing minimization step: 3397. Total energy = 1345.4437 kcal/mol (1340.4002 without restraints) Performing minimization step: 3398. Total energy = 1345.3672 kcal/mol (1340.3237 without restraints) Performing minimization step: 3399. Total energy = 1345.2906 kcal/mol (1340.2473 without restraints) Performing minimization step: 3400. Total energy = 1345.2143 kcal/mol (1340.1710 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 1345.1381 kcal/mol (1340.0950 without restraints) Performing minimization step: 3402. Total energy = 1345.0623 kcal/mol (1340.0192 without restraints) Performing minimization step: 3403. Total energy = 1344.9861 kcal/mol (1339.9429 without restraints) Performing minimization step: 3404. Total energy = 1344.9100 kcal/mol (1339.8670 without restraints) Performing minimization step: 3405. Total energy = 1344.8340 kcal/mol (1339.7911 without restraints) Performing minimization step: 3406. Total energy = 1344.7581 kcal/mol (1339.7152 without restraints) Performing minimization step: 3407. Total energy = 1344.6821 kcal/mol (1339.6392 without restraints) Performing minimization step: 3408. Total energy = 1344.6063 kcal/mol (1339.5635 without restraints) Performing minimization step: 3409. Total energy = 1344.5302 kcal/mol (1339.4875 without restraints) Performing minimization step: 3410. Total energy = 1344.4544 kcal/mol (1339.4117 without restraints) Performing minimization step: 3411. Total energy = 1344.3791 kcal/mol (1339.3364 without restraints) Performing minimization step: 3412. Total energy = 1344.3036 kcal/mol (1339.2610 without restraints) Performing minimization step: 3413. Total energy = 1344.2282 kcal/mol (1339.1857 without restraints) Performing minimization step: 3414. Total energy = 1344.1529 kcal/mol (1339.1104 without restraints) Performing minimization step: 3415. Total energy = 1344.0776 kcal/mol (1339.0352 without restraints) Performing minimization step: 3416. Total energy = 1344.0024 kcal/mol (1338.9600 without restraints) Performing minimization step: 3417. Total energy = 1343.9271 kcal/mol (1338.8847 without restraints) Performing minimization step: 3418. Total energy = 1343.8520 kcal/mol (1338.8096 without restraints) Performing minimization step: 3419. Total energy = 1343.7770 kcal/mol (1338.7347 without restraints) Performing minimization step: 3420. Total energy = 1343.7021 kcal/mol (1338.6598 without restraints) Performing minimization step: 3421. Total energy = 1343.6272 kcal/mol (1338.5849 without restraints) Performing minimization step: 3422. Total energy = 1343.5524 kcal/mol (1338.5102 without restraints) Performing minimization step: 3423. Total energy = 1343.4775 kcal/mol (1338.4353 without restraints) Performing minimization step: 3424. Total energy = 1343.4026 kcal/mol (1338.3602 without restraints) Performing minimization step: 3425. Total energy = 1343.3278 kcal/mol (1338.2856 without restraints) Performing minimization step: 3426. Total energy = 1343.2534 kcal/mol (1338.2112 without restraints) Performing minimization step: 3427. Total energy = 1343.1788 kcal/mol (1338.1368 without restraints) Performing minimization step: 3428. Total energy = 1343.1044 kcal/mol (1338.0624 without restraints) Performing minimization step: 3429. Total energy = 1343.0303 kcal/mol (1337.9883 without restraints) Performing minimization step: 3430. Total energy = 1342.9559 kcal/mol (1337.9139 without restraints) Performing minimization step: 3431. Total energy = 1342.8817 kcal/mol (1337.8397 without restraints) Performing minimization step: 3432. Total energy = 1342.8075 kcal/mol (1337.7656 without restraints) Performing minimization step: 3433. Total energy = 1342.7336 kcal/mol (1337.6918 without restraints) Performing minimization step: 3434. Total energy = 1342.6599 kcal/mol (1337.6180 without restraints) Performing minimization step: 3435. Total energy = 1342.5860 kcal/mol (1337.5441 without restraints) Performing minimization step: 3436. Total energy = 1342.5121 kcal/mol (1337.4702 without restraints) Performing minimization step: 3437. Total energy = 1342.4383 kcal/mol (1337.3964 without restraints) Performing minimization step: 3438. Total energy = 1342.3646 kcal/mol (1337.3227 without restraints) Performing minimization step: 3439. Total energy = 1342.2910 kcal/mol (1337.2491 without restraints) Performing minimization step: 3440. Total energy = 1342.2174 kcal/mol (1337.1755 without restraints) Performing minimization step: 3441. Total energy = 1342.1439 kcal/mol (1337.1020 without restraints) Performing minimization step: 3442. Total energy = 1342.0704 kcal/mol (1337.0286 without restraints) Performing minimization step: 3443. Total energy = 1341.9972 kcal/mol (1336.9553 without restraints) Performing minimization step: 3444. Total energy = 1341.9239 kcal/mol (1336.8820 without restraints) Performing minimization step: 3445. Total energy = 1341.8505 kcal/mol (1336.8085 without restraints) Performing minimization step: 3446. Total energy = 1341.7772 kcal/mol (1336.7353 without restraints) Performing minimization step: 3447. Total energy = 1341.7041 kcal/mol (1336.6624 without restraints) Performing minimization step: 3448. Total energy = 1341.6312 kcal/mol (1336.5893 without restraints) Performing minimization step: 3449. Total energy = 1341.5582 kcal/mol (1336.5163 without restraints) Performing minimization step: 3450. Total energy = 1341.4852 kcal/mol (1336.4434 without restraints) Performing minimization step: 3451. Total energy = 1341.4123 kcal/mol (1336.3704 without restraints) Performing minimization step: 3452. Total energy = 1341.3393 kcal/mol (1336.2974 without restraints) Performing minimization step: 3453. Total energy = 1341.2665 kcal/mol (1336.2246 without restraints) Performing minimization step: 3454. Total energy = 1341.1938 kcal/mol (1336.1519 without restraints) Performing minimization step: 3455. Total energy = 1341.1212 kcal/mol (1336.0793 without restraints) Performing minimization step: 3456. Total energy = 1341.0487 kcal/mol (1336.0067 without restraints) Performing minimization step: 3457. Total energy = 1340.9761 kcal/mol (1335.9341 without restraints) Performing minimization step: 3458. Total energy = 1340.9035 kcal/mol (1335.8614 without restraints) Performing minimization step: 3459. Total energy = 1340.8310 kcal/mol (1335.7890 without restraints) Performing minimization step: 3460. Total energy = 1340.7587 kcal/mol (1335.7167 without restraints) Performing minimization step: 3461. Total energy = 1340.6863 kcal/mol (1335.6441 without restraints) Performing minimization step: 3462. Total energy = 1340.6140 kcal/mol (1335.5719 without restraints) Performing minimization step: 3463. Total energy = 1340.5419 kcal/mol (1335.4998 without restraints) Performing minimization step: 3464. Total energy = 1340.4696 kcal/mol (1335.4275 without restraints) Performing minimization step: 3465. Total energy = 1340.3974 kcal/mol (1335.3552 without restraints) Performing minimization step: 3466. Total energy = 1340.3252 kcal/mol (1335.2830 without restraints) Performing minimization step: 3467. Total energy = 1340.2533 kcal/mol (1335.2110 without restraints) Performing minimization step: 3468. Total energy = 1340.1812 kcal/mol (1335.1390 without restraints) Performing minimization step: 3469. Total energy = 1340.1093 kcal/mol (1335.0670 without restraints) Performing minimization step: 3470. Total energy = 1340.0376 kcal/mol (1334.9952 without restraints) Performing minimization step: 3471. Total energy = 1339.9659 kcal/mol (1334.9235 without restraints) Performing minimization step: 3472. Total energy = 1339.8944 kcal/mol (1334.8519 without restraints) Performing minimization step: 3473. Total energy = 1339.8228 kcal/mol (1334.7803 without restraints) Performing minimization step: 3474. Total energy = 1339.7513 kcal/mol (1334.7088 without restraints) Performing minimization step: 3475. Total energy = 1339.6799 kcal/mol (1334.6374 without restraints) Performing minimization step: 3476. Total energy = 1339.6086 kcal/mol (1334.5660 without restraints) Performing minimization step: 3477. Total energy = 1339.5372 kcal/mol (1334.4946 without restraints) Performing minimization step: 3478. Total energy = 1339.4662 kcal/mol (1334.4236 without restraints) Performing minimization step: 3479. Total energy = 1339.3953 kcal/mol (1334.3525 without restraints) Performing minimization step: 3480. Total energy = 1339.3242 kcal/mol (1334.2814 without restraints) Performing minimization step: 3481. Total energy = 1339.2532 kcal/mol (1334.2103 without restraints) Performing minimization step: 3482. Total energy = 1339.1821 kcal/mol (1334.1393 without restraints) Performing minimization step: 3483. Total energy = 1339.1112 kcal/mol (1334.0683 without restraints) Performing minimization step: 3484. Total energy = 1339.0403 kcal/mol (1333.9973 without restraints) Performing minimization step: 3485. Total energy = 1338.9697 kcal/mol (1333.9266 without restraints) Performing minimization step: 3486. Total energy = 1338.8989 kcal/mol (1333.8558 without restraints) Performing minimization step: 3487. Total energy = 1338.8281 kcal/mol (1333.7848 without restraints) Performing minimization step: 3488. Total energy = 1338.7572 kcal/mol (1333.7140 without restraints) Performing minimization step: 3489. Total energy = 1338.6866 kcal/mol (1333.6434 without restraints) Performing minimization step: 3490. Total energy = 1338.6160 kcal/mol (1333.5728 without restraints) Performing minimization step: 3491. Total energy = 1338.5457 kcal/mol (1333.5023 without restraints) Performing minimization step: 3492. Total energy = 1338.4754 kcal/mol (1333.4320 without restraints) Performing minimization step: 3493. Total energy = 1338.4048 kcal/mol (1333.3613 without restraints) Performing minimization step: 3494. Total energy = 1338.3341 kcal/mol (1333.2905 without restraints) Performing minimization step: 3495. Total energy = 1338.2636 kcal/mol (1333.2200 without restraints) Performing minimization step: 3496. Total energy = 1338.1936 kcal/mol (1333.1500 without restraints) Performing minimization step: 3497. Total energy = 1338.1237 kcal/mol (1333.0799 without restraints) Performing minimization step: 3498. Total energy = 1338.0536 kcal/mol (1333.0097 without restraints) Performing minimization step: 3499. Total energy = 1337.9836 kcal/mol (1332.9397 without restraints) Performing minimization step: 3500. Total energy = 1337.9135 kcal/mol (1332.8694 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 1337.8433 kcal/mol (1332.7991 without restraints) Performing minimization step: 3502. Total energy = 1337.7732 kcal/mol (1332.7290 without restraints) Performing minimization step: 3503. Total energy = 1337.7034 kcal/mol (1332.6591 without restraints) Performing minimization step: 3504. Total energy = 1337.6337 kcal/mol (1332.5893 without restraints) Performing minimization step: 3505. Total energy = 1337.5645 kcal/mol (1332.5199 without restraints) Performing minimization step: 3506. Total energy = 1337.4948 kcal/mol (1332.4503 without restraints) Performing minimization step: 3507. Total energy = 1337.4250 kcal/mol (1332.3805 without restraints) Performing minimization step: 3508. Total energy = 1337.3556 kcal/mol (1332.3109 without restraints) Performing minimization step: 3509. Total energy = 1337.2859 kcal/mol (1332.2412 without restraints) Performing minimization step: 3510. Total energy = 1337.2164 kcal/mol (1332.1716 without restraints) Performing minimization step: 3511. Total energy = 1337.1471 kcal/mol (1332.1022 without restraints) Performing minimization step: 3512. Total energy = 1337.0779 kcal/mol (1332.0329 without restraints) Performing minimization step: 3513. Total energy = 1337.0085 kcal/mol (1331.9634 without restraints) Performing minimization step: 3514. Total energy = 1336.9394 kcal/mol (1331.8942 without restraints) Performing minimization step: 3515. Total energy = 1336.8699 kcal/mol (1331.8245 without restraints) Performing minimization step: 3516. Total energy = 1336.8008 kcal/mol (1331.7554 without restraints) Performing minimization step: 3517. Total energy = 1336.7319 kcal/mol (1331.6864 without restraints) Performing minimization step: 3518. Total energy = 1336.6629 kcal/mol (1331.6174 without restraints) Performing minimization step: 3519. Total energy = 1336.5940 kcal/mol (1331.5481 without restraints) Performing minimization step: 3520. Total energy = 1336.5250 kcal/mol (1331.4792 without restraints) Performing minimization step: 3521. Total energy = 1336.4563 kcal/mol (1331.4104 without restraints) Performing minimization step: 3522. Total energy = 1336.3876 kcal/mol (1331.3415 without restraints) Performing minimization step: 3523. Total energy = 1336.3189 kcal/mol (1331.2728 without restraints) Performing minimization step: 3524. Total energy = 1336.2504 kcal/mol (1331.2042 without restraints) Performing minimization step: 3525. Total energy = 1336.1818 kcal/mol (1331.1355 without restraints) Performing minimization step: 3526. Total energy = 1336.1133 kcal/mol (1331.0669 without restraints) Performing minimization step: 3527. Total energy = 1336.0447 kcal/mol (1330.9982 without restraints) Performing minimization step: 3528. Total energy = 1335.9763 kcal/mol (1330.9297 without restraints) Performing minimization step: 3529. Total energy = 1335.9078 kcal/mol (1330.8611 without restraints) Performing minimization step: 3530. Total energy = 1335.8392 kcal/mol (1330.7923 without restraints) Performing minimization step: 3531. Total energy = 1335.7710 kcal/mol (1330.7240 without restraints) Performing minimization step: 3532. Total energy = 1335.7027 kcal/mol (1330.6555 without restraints) Performing minimization step: 3533. Total energy = 1335.6346 kcal/mol (1330.5874 without restraints) Performing minimization step: 3534. Total energy = 1335.5666 kcal/mol (1330.5192 without restraints) Performing minimization step: 3535. Total energy = 1335.4985 kcal/mol (1330.4511 without restraints) Performing minimization step: 3536. Total energy = 1335.4305 kcal/mol (1330.3828 without restraints) Performing minimization step: 3537. Total energy = 1335.3624 kcal/mol (1330.3147 without restraints) Performing minimization step: 3538. Total energy = 1335.2946 kcal/mol (1330.2468 without restraints) Performing minimization step: 3539. Total energy = 1335.2268 kcal/mol (1330.1788 without restraints) Performing minimization step: 3540. Total energy = 1335.1590 kcal/mol (1330.1110 without restraints) Performing minimization step: 3541. Total energy = 1335.0914 kcal/mol (1330.0432 without restraints) Performing minimization step: 3542. Total energy = 1335.0237 kcal/mol (1329.9755 without restraints) Performing minimization step: 3543. Total energy = 1334.9559 kcal/mol (1329.9075 without restraints) Performing minimization step: 3544. Total energy = 1334.8884 kcal/mol (1329.8398 without restraints) Performing minimization step: 3545. Total energy = 1334.8209 kcal/mol (1329.7722 without restraints) Performing minimization step: 3546. Total energy = 1334.7534 kcal/mol (1329.7046 without restraints) Performing minimization step: 3547. Total energy = 1334.6861 kcal/mol (1329.6372 without restraints) Performing minimization step: 3548. Total energy = 1334.6188 kcal/mol (1329.5698 without restraints) Performing minimization step: 3549. Total energy = 1334.5517 kcal/mol (1329.5026 without restraints) Performing minimization step: 3550. Total energy = 1334.4846 kcal/mol (1329.4353 without restraints) Performing minimization step: 3551. Total energy = 1334.4175 kcal/mol (1329.3681 without restraints) Performing minimization step: 3552. Total energy = 1334.3507 kcal/mol (1329.3011 without restraints) Performing minimization step: 3553. Total energy = 1334.2837 kcal/mol (1329.2339 without restraints) Performing minimization step: 3554. Total energy = 1334.2166 kcal/mol (1329.1668 without restraints) Performing minimization step: 3555. Total energy = 1334.1494 kcal/mol (1329.0994 without restraints) Performing minimization step: 3556. Total energy = 1334.0828 kcal/mol (1329.0326 without restraints) Performing minimization step: 3557. Total energy = 1334.0160 kcal/mol (1328.9657 without restraints) Performing minimization step: 3558. Total energy = 1333.9491 kcal/mol (1328.8985 without restraints) Performing minimization step: 3559. Total energy = 1333.8823 kcal/mol (1328.8317 without restraints) Performing minimization step: 3560. Total energy = 1333.8154 kcal/mol (1328.7647 without restraints) Performing minimization step: 3561. Total energy = 1333.7489 kcal/mol (1328.6980 without restraints) Performing minimization step: 3562. Total energy = 1333.6824 kcal/mol (1328.6313 without restraints) Performing minimization step: 3563. Total energy = 1333.6158 kcal/mol (1328.5647 without restraints) Performing minimization step: 3564. Total energy = 1333.5493 kcal/mol (1328.4980 without restraints) Performing minimization step: 3565. Total energy = 1333.4829 kcal/mol (1328.4315 without restraints) Performing minimization step: 3566. Total energy = 1333.4165 kcal/mol (1328.3649 without restraints) Performing minimization step: 3567. Total energy = 1333.3502 kcal/mol (1328.2984 without restraints) Performing minimization step: 3568. Total energy = 1333.2837 kcal/mol (1328.2318 without restraints) Performing minimization step: 3569. Total energy = 1333.2175 kcal/mol (1328.1655 without restraints) Performing minimization step: 3570. Total energy = 1333.1514 kcal/mol (1328.0991 without restraints) Performing minimization step: 3571. Total energy = 1333.0853 kcal/mol (1328.0329 without restraints) Performing minimization step: 3572. Total energy = 1333.0194 kcal/mol (1327.9668 without restraints) Performing minimization step: 3573. Total energy = 1332.9534 kcal/mol (1327.9006 without restraints) Performing minimization step: 3574. Total energy = 1332.8874 kcal/mol (1327.8345 without restraints) Performing minimization step: 3575. Total energy = 1332.8214 kcal/mol (1327.7684 without restraints) Performing minimization step: 3576. Total energy = 1332.7555 kcal/mol (1327.7023 without restraints) Performing minimization step: 3577. Total energy = 1332.6897 kcal/mol (1327.6363 without restraints) Performing minimization step: 3578. Total energy = 1332.6239 kcal/mol (1327.5704 without restraints) Performing minimization step: 3579. Total energy = 1332.5583 kcal/mol (1327.5046 without restraints) Performing minimization step: 3580. Total energy = 1332.4924 kcal/mol (1327.4385 without restraints) Performing minimization step: 3581. Total energy = 1332.4265 kcal/mol (1327.3725 without restraints) Performing minimization step: 3582. Total energy = 1332.3609 kcal/mol (1327.3067 without restraints) Performing minimization step: 3583. Total energy = 1332.2954 kcal/mol (1327.2410 without restraints) Performing minimization step: 3584. Total energy = 1332.2301 kcal/mol (1327.1755 without restraints) Performing minimization step: 3585. Total energy = 1332.1650 kcal/mol (1327.1103 without restraints) Performing minimization step: 3586. Total energy = 1332.0996 kcal/mol (1327.0446 without restraints) Performing minimization step: 3587. Total energy = 1332.0340 kcal/mol (1326.9789 without restraints) Performing minimization step: 3588. Total energy = 1331.9686 kcal/mol (1326.9134 without restraints) Performing minimization step: 3589. Total energy = 1331.9034 kcal/mol (1326.8480 without restraints) Performing minimization step: 3590. Total energy = 1331.8384 kcal/mol (1326.7828 without restraints) Performing minimization step: 3591. Total energy = 1331.7731 kcal/mol (1326.7173 without restraints) Performing minimization step: 3592. Total energy = 1331.7080 kcal/mol (1326.6520 without restraints) Performing minimization step: 3593. Total energy = 1331.6431 kcal/mol (1326.5870 without restraints) Performing minimization step: 3594. Total energy = 1331.5781 kcal/mol (1326.5218 without restraints) Performing minimization step: 3595. Total energy = 1331.5131 kcal/mol (1326.4566 without restraints) Performing minimization step: 3596. Total energy = 1331.4480 kcal/mol (1326.3913 without restraints) Performing minimization step: 3597. Total energy = 1331.3830 kcal/mol (1326.3260 without restraints) Performing minimization step: 3598. Total energy = 1331.3174 kcal/mol (1326.2604 without restraints) Performing minimization step: 3599. Total energy = 1331.2526 kcal/mol (1326.1954 without restraints) Performing minimization step: 3600. Total energy = 1331.1885 kcal/mol (1326.1311 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 1331.1238 kcal/mol (1326.0662 without restraints) Performing minimization step: 3602. Total energy = 1331.0590 kcal/mol (1326.0012 without restraints) Performing minimization step: 3603. Total energy = 1330.9943 kcal/mol (1325.9364 without restraints) Performing minimization step: 3604. Total energy = 1330.9298 kcal/mol (1325.8716 without restraints) Performing minimization step: 3605. Total energy = 1330.8654 kcal/mol (1325.8070 without restraints) Performing minimization step: 3606. Total energy = 1330.8005 kcal/mol (1325.7419 without restraints) Performing minimization step: 3607. Total energy = 1330.7361 kcal/mol (1325.6773 without restraints) Performing minimization step: 3608. Total energy = 1330.6717 kcal/mol (1325.6127 without restraints) Performing minimization step: 3609. Total energy = 1330.6070 kcal/mol (1325.5478 without restraints) Performing minimization step: 3610. Total energy = 1330.5425 kcal/mol (1325.4831 without restraints) Performing minimization step: 3611. Total energy = 1330.4784 kcal/mol (1325.4189 without restraints) Performing minimization step: 3612. Total energy = 1330.4140 kcal/mol (1325.3542 without restraints) Performing minimization step: 3613. Total energy = 1330.3498 kcal/mol (1325.2899 without restraints) Performing minimization step: 3614. Total energy = 1330.2856 kcal/mol (1325.2254 without restraints) Performing minimization step: 3615. Total energy = 1330.2215 kcal/mol (1325.1611 without restraints) Performing minimization step: 3616. Total energy = 1330.1573 kcal/mol (1325.0967 without restraints) Performing minimization step: 3617. Total energy = 1330.0931 kcal/mol (1325.0324 without restraints) Performing minimization step: 3618. Total energy = 1330.0290 kcal/mol (1324.9681 without restraints) Performing minimization step: 3619. Total energy = 1329.9652 kcal/mol (1324.9040 without restraints) Performing minimization step: 3620. Total energy = 1329.9015 kcal/mol (1324.8401 without restraints) Performing minimization step: 3621. Total energy = 1329.8377 kcal/mol (1324.7762 without restraints) Performing minimization step: 3622. Total energy = 1329.7742 kcal/mol (1324.7124 without restraints) Performing minimization step: 3623. Total energy = 1329.7105 kcal/mol (1324.6485 without restraints) Performing minimization step: 3624. Total energy = 1329.6470 kcal/mol (1324.5848 without restraints) Performing minimization step: 3625. Total energy = 1329.5833 kcal/mol (1324.5209 without restraints) Performing minimization step: 3626. Total energy = 1329.5198 kcal/mol (1324.4571 without restraints) Performing minimization step: 3627. Total energy = 1329.4562 kcal/mol (1324.3934 without restraints) Performing minimization step: 3628. Total energy = 1329.3931 kcal/mol (1324.3302 without restraints) Performing minimization step: 3629. Total energy = 1329.3297 kcal/mol (1324.2665 without restraints) Performing minimization step: 3630. Total energy = 1329.2661 kcal/mol (1324.2026 without restraints) Performing minimization step: 3631. Total energy = 1329.2028 kcal/mol (1324.1391 without restraints) Performing minimization step: 3632. Total energy = 1329.1396 kcal/mol (1324.0757 without restraints) Performing minimization step: 3633. Total energy = 1329.0763 kcal/mol (1324.0122 without restraints) Performing minimization step: 3634. Total energy = 1329.0130 kcal/mol (1323.9485 without restraints) Performing minimization step: 3635. Total energy = 1328.9499 kcal/mol (1323.8855 without restraints) Performing minimization step: 3636. Total energy = 1328.8869 kcal/mol (1323.8222 without restraints) Performing minimization step: 3637. Total energy = 1328.8239 kcal/mol (1323.7589 without restraints) Performing minimization step: 3638. Total energy = 1328.7608 kcal/mol (1323.6956 without restraints) Performing minimization step: 3639. Total energy = 1328.6978 kcal/mol (1323.6323 without restraints) Performing minimization step: 3640. Total energy = 1328.6348 kcal/mol (1323.5691 without restraints) Performing minimization step: 3641. Total energy = 1328.5719 kcal/mol (1323.5060 without restraints) Performing minimization step: 3642. Total energy = 1328.5090 kcal/mol (1323.4429 without restraints) Performing minimization step: 3643. Total energy = 1328.4464 kcal/mol (1323.3801 without restraints) Performing minimization step: 3644. Total energy = 1328.3834 kcal/mol (1323.3168 without restraints) Performing minimization step: 3645. Total energy = 1328.3205 kcal/mol (1323.2534 without restraints) Performing minimization step: 3646. Total energy = 1328.2575 kcal/mol (1323.1904 without restraints) Performing minimization step: 3647. Total energy = 1328.1948 kcal/mol (1323.1275 without restraints) Performing minimization step: 3648. Total energy = 1328.1322 kcal/mol (1323.0647 without restraints) Performing minimization step: 3649. Total energy = 1328.0694 kcal/mol (1323.0017 without restraints) Performing minimization step: 3650. Total energy = 1328.0069 kcal/mol (1322.9390 without restraints) Performing minimization step: 3651. Total energy = 1327.9447 kcal/mol (1322.8765 without restraints) Performing minimization step: 3652. Total energy = 1327.8820 kcal/mol (1322.8136 without restraints) Performing minimization step: 3653. Total energy = 1327.8196 kcal/mol (1322.7509 without restraints) Performing minimization step: 3654. Total energy = 1327.7570 kcal/mol (1322.6881 without restraints) Performing minimization step: 3655. Total energy = 1327.6945 kcal/mol (1322.6253 without restraints) Performing minimization step: 3656. Total energy = 1327.6322 kcal/mol (1322.5628 without restraints) Performing minimization step: 3657. Total energy = 1327.5700 kcal/mol (1322.5004 without restraints) Performing minimization step: 3658. Total energy = 1327.5075 kcal/mol (1322.4376 without restraints) Performing minimization step: 3659. Total energy = 1327.4454 kcal/mol (1322.3753 without restraints) Performing minimization step: 3660. Total energy = 1327.3834 kcal/mol (1322.3131 without restraints) Performing minimization step: 3661. Total energy = 1327.3214 kcal/mol (1322.2507 without restraints) Performing minimization step: 3662. Total energy = 1327.2593 kcal/mol (1322.1885 without restraints) Performing minimization step: 3663. Total energy = 1327.1973 kcal/mol (1322.1262 without restraints) Performing minimization step: 3664. Total energy = 1327.1352 kcal/mol (1322.0638 without restraints) Performing minimization step: 3665. Total energy = 1327.0732 kcal/mol (1322.0016 without restraints) Performing minimization step: 3666. Total energy = 1327.0112 kcal/mol (1321.9393 without restraints) Performing minimization step: 3667. Total energy = 1326.9495 kcal/mol (1321.8775 without restraints) Performing minimization step: 3668. Total energy = 1326.8878 kcal/mol (1321.8155 without restraints) Performing minimization step: 3669. Total energy = 1326.8263 kcal/mol (1321.7537 without restraints) Performing minimization step: 3670. Total energy = 1326.7647 kcal/mol (1321.6920 without restraints) Performing minimization step: 3671. Total energy = 1326.7031 kcal/mol (1321.6301 without restraints) Performing minimization step: 3672. Total energy = 1326.6415 kcal/mol (1321.5682 without restraints) Performing minimization step: 3673. Total energy = 1326.5798 kcal/mol (1321.5062 without restraints) Performing minimization step: 3674. Total energy = 1326.5182 kcal/mol (1321.4444 without restraints) Performing minimization step: 3675. Total energy = 1326.4567 kcal/mol (1321.3826 without restraints) Performing minimization step: 3676. Total energy = 1326.3950 kcal/mol (1321.3207 without restraints) Performing minimization step: 3677. Total energy = 1326.3340 kcal/mol (1321.2595 without restraints) Performing minimization step: 3678. Total energy = 1326.2727 kcal/mol (1321.1979 without restraints) Performing minimization step: 3679. Total energy = 1326.2116 kcal/mol (1321.1365 without restraints) Performing minimization step: 3680. Total energy = 1326.1503 kcal/mol (1321.0750 without restraints) Performing minimization step: 3681. Total energy = 1326.0890 kcal/mol (1321.0133 without restraints) Performing minimization step: 3682. Total energy = 1326.0279 kcal/mol (1320.9521 without restraints) Performing minimization step: 3683. Total energy = 1325.9668 kcal/mol (1320.8907 without restraints) Performing minimization step: 3684. Total energy = 1325.9056 kcal/mol (1320.8293 without restraints) Performing minimization step: 3685. Total energy = 1325.8441 kcal/mol (1320.7675 without restraints) Performing minimization step: 3686. Total energy = 1325.7830 kcal/mol (1320.7061 without restraints) Performing minimization step: 3687. Total energy = 1325.7220 kcal/mol (1320.6448 without restraints) Performing minimization step: 3688. Total energy = 1325.6610 kcal/mol (1320.5836 without restraints) Performing minimization step: 3689. Total energy = 1325.6004 kcal/mol (1320.5228 without restraints) Performing minimization step: 3690. Total energy = 1325.5393 kcal/mol (1320.4614 without restraints) Performing minimization step: 3691. Total energy = 1325.4783 kcal/mol (1320.4001 without restraints) Performing minimization step: 3692. Total energy = 1325.4175 kcal/mol (1320.3390 without restraints) Performing minimization step: 3693. Total energy = 1325.3564 kcal/mol (1320.2777 without restraints) Performing minimization step: 3694. Total energy = 1325.2957 kcal/mol (1320.2167 without restraints) Performing minimization step: 3695. Total energy = 1325.2350 kcal/mol (1320.1557 without restraints) Performing minimization step: 3696. Total energy = 1325.1745 kcal/mol (1320.0950 without restraints) Performing minimization step: 3697. Total energy = 1325.1139 kcal/mol (1320.0341 without restraints) Performing minimization step: 3698. Total energy = 1325.0535 kcal/mol (1319.9734 without restraints) Performing minimization step: 3699. Total energy = 1324.9932 kcal/mol (1319.9128 without restraints) Performing minimization step: 3700. Total energy = 1324.9322 kcal/mol (1319.8515 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 1324.8717 kcal/mol (1319.7908 without restraints) Performing minimization step: 3702. Total energy = 1324.8113 kcal/mol (1319.7301 without restraints) Performing minimization step: 3703. Total energy = 1324.7509 kcal/mol (1319.6695 without restraints) Performing minimization step: 3704. Total energy = 1324.6906 kcal/mol (1319.6089 without restraints) Performing minimization step: 3705. Total energy = 1324.6302 kcal/mol (1319.5482 without restraints) Performing minimization step: 3706. Total energy = 1324.5699 kcal/mol (1319.4875 without restraints) Performing minimization step: 3707. Total energy = 1324.5095 kcal/mol (1319.4270 without restraints) Performing minimization step: 3708. Total energy = 1324.4492 kcal/mol (1319.3664 without restraints) Performing minimization step: 3709. Total energy = 1324.3890 kcal/mol (1319.3059 without restraints) Performing minimization step: 3710. Total energy = 1324.3288 kcal/mol (1319.2453 without restraints) Performing minimization step: 3711. Total energy = 1324.2686 kcal/mol (1319.1849 without restraints) Performing minimization step: 3712. Total energy = 1324.2086 kcal/mol (1319.1246 without restraints) Performing minimization step: 3713. Total energy = 1324.1486 kcal/mol (1319.0645 without restraints) Performing minimization step: 3714. Total energy = 1324.0887 kcal/mol (1319.0042 without restraints) Performing minimization step: 3715. Total energy = 1324.0288 kcal/mol (1318.9440 without restraints) Performing minimization step: 3716. Total energy = 1323.9687 kcal/mol (1318.8837 without restraints) Performing minimization step: 3717. Total energy = 1323.9089 kcal/mol (1318.8236 without restraints) Performing minimization step: 3718. Total energy = 1323.8491 kcal/mol (1318.7634 without restraints) Performing minimization step: 3719. Total energy = 1323.7893 kcal/mol (1318.7034 without restraints) Performing minimization step: 3720. Total energy = 1323.7295 kcal/mol (1318.6433 without restraints) Performing minimization step: 3721. Total energy = 1323.6699 kcal/mol (1318.5834 without restraints) Performing minimization step: 3722. Total energy = 1323.6102 kcal/mol (1318.5234 without restraints) Performing minimization step: 3723. Total energy = 1323.5506 kcal/mol (1318.4635 without restraints) Performing minimization step: 3724. Total energy = 1323.4911 kcal/mol (1318.4038 without restraints) Performing minimization step: 3725. Total energy = 1323.4316 kcal/mol (1318.3440 without restraints) Performing minimization step: 3726. Total energy = 1323.3723 kcal/mol (1318.2844 without restraints) Performing minimization step: 3727. Total energy = 1323.3128 kcal/mol (1318.2246 without restraints) Performing minimization step: 3728. Total energy = 1323.2534 kcal/mol (1318.1649 without restraints) Performing minimization step: 3729. Total energy = 1323.1941 kcal/mol (1318.1053 without restraints) Performing minimization step: 3730. Total energy = 1323.1347 kcal/mol (1318.0456 without restraints) Performing minimization step: 3731. Total energy = 1323.0754 kcal/mol (1317.9860 without restraints) Performing minimization step: 3732. Total energy = 1323.0162 kcal/mol (1317.9264 without restraints) Performing minimization step: 3733. Total energy = 1322.9569 kcal/mol (1317.8670 without restraints) Performing minimization step: 3734. Total energy = 1322.8974 kcal/mol (1317.8071 without restraints) Performing minimization step: 3735. Total energy = 1322.8382 kcal/mol (1317.7477 without restraints) Performing minimization step: 3736. Total energy = 1322.7790 kcal/mol (1317.6882 without restraints) Performing minimization step: 3737. Total energy = 1322.7201 kcal/mol (1317.6290 without restraints) Performing minimization step: 3738. Total energy = 1322.6610 kcal/mol (1317.5696 without restraints) Performing minimization step: 3739. Total energy = 1322.6020 kcal/mol (1317.5103 without restraints) Performing minimization step: 3740. Total energy = 1322.5430 kcal/mol (1317.4509 without restraints) Performing minimization step: 3741. Total energy = 1322.4840 kcal/mol (1317.3916 without restraints) Performing minimization step: 3742. Total energy = 1322.4250 kcal/mol (1317.3324 without restraints) Performing minimization step: 3743. Total energy = 1322.3659 kcal/mol (1317.2730 without restraints) Performing minimization step: 3744. Total energy = 1322.3070 kcal/mol (1317.2137 without restraints) Performing minimization step: 3745. Total energy = 1322.2480 kcal/mol (1317.1545 without restraints) Performing minimization step: 3746. Total energy = 1322.1892 kcal/mol (1317.0954 without restraints) Performing minimization step: 3747. Total energy = 1322.1307 kcal/mol (1317.0366 without restraints) Performing minimization step: 3748. Total energy = 1322.0720 kcal/mol (1316.9775 without restraints) Performing minimization step: 3749. Total energy = 1322.0133 kcal/mol (1316.9186 without restraints) Performing minimization step: 3750. Total energy = 1321.9547 kcal/mol (1316.8597 without restraints) Performing minimization step: 3751. Total energy = 1321.8963 kcal/mol (1316.8009 without restraints) Performing minimization step: 3752. Total energy = 1321.8378 kcal/mol (1316.7423 without restraints) Performing minimization step: 3753. Total energy = 1321.7794 kcal/mol (1316.6835 without restraints) Performing minimization step: 3754. Total energy = 1321.7209 kcal/mol (1316.6246 without restraints) Performing minimization step: 3755. Total energy = 1321.6626 kcal/mol (1316.5660 without restraints) Performing minimization step: 3756. Total energy = 1321.6041 kcal/mol (1316.5072 without restraints) Performing minimization step: 3757. Total energy = 1321.5455 kcal/mol (1316.4481 without restraints) Performing minimization step: 3758. Total energy = 1321.4869 kcal/mol (1316.3894 without restraints) Performing minimization step: 3759. Total energy = 1321.4284 kcal/mol (1316.3306 without restraints) Performing minimization step: 3760. Total energy = 1321.3701 kcal/mol (1316.2720 without restraints) Performing minimization step: 3761. Total energy = 1321.3115 kcal/mol (1316.2130 without restraints) Performing minimization step: 3762. Total energy = 1321.2532 kcal/mol (1316.1544 without restraints) Performing minimization step: 3763. Total energy = 1321.1947 kcal/mol (1316.0957 without restraints) Performing minimization step: 3764. Total energy = 1321.1366 kcal/mol (1316.0372 without restraints) Performing minimization step: 3765. Total energy = 1321.0784 kcal/mol (1315.9787 without restraints) Performing minimization step: 3766. Total energy = 1321.0203 kcal/mol (1315.9203 without restraints) Performing minimization step: 3767. Total energy = 1320.9621 kcal/mol (1315.8617 without restraints) Performing minimization step: 3768. Total energy = 1320.9042 kcal/mol (1315.8036 without restraints) Performing minimization step: 3769. Total energy = 1320.8462 kcal/mol (1315.7453 without restraints) Performing minimization step: 3770. Total energy = 1320.7882 kcal/mol (1315.6870 without restraints) Performing minimization step: 3771. Total energy = 1320.7303 kcal/mol (1315.6288 without restraints) Performing minimization step: 3772. Total energy = 1320.6722 kcal/mol (1315.5703 without restraints) Performing minimization step: 3773. Total energy = 1320.6146 kcal/mol (1315.5124 without restraints) Performing minimization step: 3774. Total energy = 1320.5568 kcal/mol (1315.4543 without restraints) Performing minimization step: 3775. Total energy = 1320.4992 kcal/mol (1315.3963 without restraints) Performing minimization step: 3776. Total energy = 1320.4414 kcal/mol (1315.3383 without restraints) Performing minimization step: 3777. Total energy = 1320.3837 kcal/mol (1315.2802 without restraints) Performing minimization step: 3778. Total energy = 1320.3260 kcal/mol (1315.2223 without restraints) Performing minimization step: 3779. Total energy = 1320.2682 kcal/mol (1315.1641 without restraints) Performing minimization step: 3780. Total energy = 1320.2106 kcal/mol (1315.1062 without restraints) Performing minimization step: 3781. Total energy = 1320.1530 kcal/mol (1315.0483 without restraints) Performing minimization step: 3782. Total energy = 1320.0957 kcal/mol (1314.9907 without restraints) Performing minimization step: 3783. Total energy = 1320.0386 kcal/mol (1314.9332 without restraints) Performing minimization step: 3784. Total energy = 1319.9811 kcal/mol (1314.8754 without restraints) Performing minimization step: 3785. Total energy = 1319.9236 kcal/mol (1314.8176 without restraints) Performing minimization step: 3786. Total energy = 1319.8662 kcal/mol (1314.7599 without restraints) Performing minimization step: 3787. Total energy = 1319.8089 kcal/mol (1314.7022 without restraints) Performing minimization step: 3788. Total energy = 1319.7515 kcal/mol (1314.6445 without restraints) Performing minimization step: 3789. Total energy = 1319.6942 kcal/mol (1314.5869 without restraints) Performing minimization step: 3790. Total energy = 1319.6369 kcal/mol (1314.5292 without restraints) Performing minimization step: 3791. Total energy = 1319.5796 kcal/mol (1314.4716 without restraints) Performing minimization step: 3792. Total energy = 1319.5226 kcal/mol (1314.4143 without restraints) Performing minimization step: 3793. Total energy = 1319.4654 kcal/mol (1314.3568 without restraints) Performing minimization step: 3794. Total energy = 1319.4085 kcal/mol (1314.2995 without restraints) Performing minimization step: 3795. Total energy = 1319.3513 kcal/mol (1314.2420 without restraints) Performing minimization step: 3796. Total energy = 1319.2942 kcal/mol (1314.1846 without restraints) Performing minimization step: 3797. Total energy = 1319.2372 kcal/mol (1314.1272 without restraints) Performing minimization step: 3798. Total energy = 1319.1800 kcal/mol (1314.0696 without restraints) Performing minimization step: 3799. Total energy = 1319.1229 kcal/mol (1314.0122 without restraints) Performing minimization step: 3800. Total energy = 1319.0661 kcal/mol (1313.9552 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 1319.0092 kcal/mol (1313.8979 without restraints) Performing minimization step: 3802. Total energy = 1318.9523 kcal/mol (1313.8407 without restraints) Performing minimization step: 3803. Total energy = 1318.8954 kcal/mol (1313.7835 without restraints) Performing minimization step: 3804. Total energy = 1318.8386 kcal/mol (1313.7263 without restraints) Performing minimization step: 3805. Total energy = 1318.7819 kcal/mol (1313.6694 without restraints) Performing minimization step: 3806. Total energy = 1318.7250 kcal/mol (1313.6121 without restraints) Performing minimization step: 3807. Total energy = 1318.6683 kcal/mol (1313.5550 without restraints) Performing minimization step: 3808. Total energy = 1318.6116 kcal/mol (1313.4979 without restraints) Performing minimization step: 3809. Total energy = 1318.5549 kcal/mol (1313.4410 without restraints) Performing minimization step: 3810. Total energy = 1318.4983 kcal/mol (1313.3840 without restraints) Performing minimization step: 3811. Total energy = 1318.4419 kcal/mol (1313.3273 without restraints) Performing minimization step: 3812. Total energy = 1318.3853 kcal/mol (1313.2704 without restraints) Performing minimization step: 3813. Total energy = 1318.3288 kcal/mol (1313.2136 without restraints) Performing minimization step: 3814. Total energy = 1318.2721 kcal/mol (1313.1565 without restraints) Performing minimization step: 3815. Total energy = 1318.2156 kcal/mol (1313.0997 without restraints) Performing minimization step: 3816. Total energy = 1318.1592 kcal/mol (1313.0429 without restraints) Performing minimization step: 3817. Total energy = 1318.1028 kcal/mol (1312.9861 without restraints) Performing minimization step: 3818. Total energy = 1318.0463 kcal/mol (1312.9292 without restraints) Performing minimization step: 3819. Total energy = 1317.9892 kcal/mol (1312.8717 without restraints) Performing minimization step: 3820. Total energy = 1317.9327 kcal/mol (1312.8151 without restraints) Performing minimization step: 3821. Total energy = 1317.8762 kcal/mol (1312.7581 without restraints) Performing minimization step: 3822. Total energy = 1317.8199 kcal/mol (1312.7016 without restraints) Performing minimization step: 3823. Total energy = 1317.7637 kcal/mol (1312.6450 without restraints) Performing minimization step: 3824. Total energy = 1317.7079 kcal/mol (1312.5889 without restraints) Performing minimization step: 3825. Total energy = 1317.6522 kcal/mol (1312.5329 without restraints) Performing minimization step: 3826. Total energy = 1317.5961 kcal/mol (1312.4764 without restraints) Performing minimization step: 3827. Total energy = 1317.5402 kcal/mol (1312.4202 without restraints) Performing minimization step: 3828. Total energy = 1317.4841 kcal/mol (1312.3637 without restraints) Performing minimization step: 3829. Total energy = 1317.4281 kcal/mol (1312.3074 without restraints) Performing minimization step: 3830. Total energy = 1317.3723 kcal/mol (1312.2512 without restraints) Performing minimization step: 3831. Total energy = 1317.3164 kcal/mol (1312.1950 without restraints) Performing minimization step: 3832. Total energy = 1317.2603 kcal/mol (1312.1385 without restraints) Performing minimization step: 3833. Total energy = 1317.2045 kcal/mol (1312.0825 without restraints) Performing minimization step: 3834. Total energy = 1317.1487 kcal/mol (1312.0262 without restraints) Performing minimization step: 3835. Total energy = 1317.0928 kcal/mol (1311.9700 without restraints) Performing minimization step: 3836. Total energy = 1317.0367 kcal/mol (1311.9136 without restraints) Performing minimization step: 3837. Total energy = 1316.9813 kcal/mol (1311.8578 without restraints) Performing minimization step: 3838. Total energy = 1316.9253 kcal/mol (1311.8015 without restraints) Performing minimization step: 3839. Total energy = 1316.8696 kcal/mol (1311.7454 without restraints) Performing minimization step: 3840. Total energy = 1316.8138 kcal/mol (1311.6893 without restraints) Performing minimization step: 3841. Total energy = 1316.7582 kcal/mol (1311.6333 without restraints) Performing minimization step: 3842. Total energy = 1316.7023 kcal/mol (1311.5772 without restraints) Performing minimization step: 3843. Total energy = 1316.6468 kcal/mol (1311.5213 without restraints) Performing minimization step: 3844. Total energy = 1316.5912 kcal/mol (1311.4653 without restraints) Performing minimization step: 3845. Total energy = 1316.5354 kcal/mol (1311.4091 without restraints) Performing minimization step: 3846. Total energy = 1316.4797 kcal/mol (1311.3530 without restraints) Performing minimization step: 3847. Total energy = 1316.4241 kcal/mol (1311.2971 without restraints) Performing minimization step: 3848. Total energy = 1316.3689 kcal/mol (1311.2415 without restraints) Performing minimization step: 3849. Total energy = 1316.3134 kcal/mol (1311.1857 without restraints) Performing minimization step: 3850. Total energy = 1316.2578 kcal/mol (1311.1299 without restraints) Performing minimization step: 3851. Total energy = 1316.2025 kcal/mol (1311.0741 without restraints) Performing minimization step: 3852. Total energy = 1316.1466 kcal/mol (1311.0179 without restraints) Performing minimization step: 3853. Total energy = 1316.0911 kcal/mol (1310.9619 without restraints) Performing minimization step: 3854. Total energy = 1316.0359 kcal/mol (1310.9065 without restraints) Performing minimization step: 3855. Total energy = 1315.9804 kcal/mol (1310.8506 without restraints) Performing minimization step: 3856. Total energy = 1315.9252 kcal/mol (1310.7951 without restraints) Performing minimization step: 3857. Total energy = 1315.8700 kcal/mol (1310.7395 without restraints) Performing minimization step: 3858. Total energy = 1315.8149 kcal/mol (1310.6841 without restraints) Performing minimization step: 3859. Total energy = 1315.7597 kcal/mol (1310.6284 without restraints) Performing minimization step: 3860. Total energy = 1315.7045 kcal/mol (1310.5729 without restraints) Performing minimization step: 3861. Total energy = 1315.6494 kcal/mol (1310.5175 without restraints) Performing minimization step: 3862. Total energy = 1315.5944 kcal/mol (1310.4621 without restraints) Performing minimization step: 3863. Total energy = 1315.5395 kcal/mol (1310.4070 without restraints) Performing minimization step: 3864. Total energy = 1315.4846 kcal/mol (1310.3516 without restraints) Performing minimization step: 3865. Total energy = 1315.4296 kcal/mol (1310.2963 without restraints) Performing minimization step: 3866. Total energy = 1315.3741 kcal/mol (1310.2404 without restraints) Performing minimization step: 3867. Total energy = 1315.3199 kcal/mol (1310.1857 without restraints) Performing minimization step: 3868. Total energy = 1315.2649 kcal/mol (1310.1305 without restraints) Performing minimization step: 3869. Total energy = 1315.2101 kcal/mol (1310.0753 without restraints) Performing minimization step: 3870. Total energy = 1315.1552 kcal/mol (1310.0201 without restraints) Performing minimization step: 3871. Total energy = 1315.1005 kcal/mol (1309.9649 without restraints) Performing minimization step: 3872. Total energy = 1315.0457 kcal/mol (1309.9098 without restraints) Performing minimization step: 3873. Total energy = 1314.9909 kcal/mol (1309.8547 without restraints) Performing minimization step: 3874. Total energy = 1314.9356 kcal/mol (1309.7991 without restraints) Performing minimization step: 3875. Total energy = 1314.8809 kcal/mol (1309.7439 without restraints) Performing minimization step: 3876. Total energy = 1314.8264 kcal/mol (1309.6892 without restraints) Performing minimization step: 3877. Total energy = 1314.7716 kcal/mol (1309.6340 without restraints) Performing minimization step: 3878. Total energy = 1314.7171 kcal/mol (1309.5791 without restraints) Performing minimization step: 3879. Total energy = 1314.6627 kcal/mol (1309.5243 without restraints) Performing minimization step: 3880. Total energy = 1314.6082 kcal/mol (1309.4694 without restraints) Performing minimization step: 3881. Total energy = 1314.5537 kcal/mol (1309.4146 without restraints) Performing minimization step: 3882. Total energy = 1314.4992 kcal/mol (1309.3597 without restraints) Performing minimization step: 3883. Total energy = 1314.4446 kcal/mol (1309.3047 without restraints) Performing minimization step: 3884. Total energy = 1314.3900 kcal/mol (1309.2497 without restraints) Performing minimization step: 3885. Total energy = 1314.3355 kcal/mol (1309.1949 without restraints) Performing minimization step: 3886. Total energy = 1314.2811 kcal/mol (1309.1402 without restraints) Performing minimization step: 3887. Total energy = 1314.2266 kcal/mol (1309.0853 without restraints) Performing minimization step: 3888. Total energy = 1314.1725 kcal/mol (1309.0309 without restraints) Performing minimization step: 3889. Total energy = 1314.1183 kcal/mol (1308.9762 without restraints) Performing minimization step: 3890. Total energy = 1314.0637 kcal/mol (1308.9212 without restraints) Performing minimization step: 3891. Total energy = 1314.0094 kcal/mol (1308.8666 without restraints) Performing minimization step: 3892. Total energy = 1313.9552 kcal/mol (1308.8121 without restraints) Performing minimization step: 3893. Total energy = 1313.9010 kcal/mol (1308.7575 without restraints) Performing minimization step: 3894. Total energy = 1313.8469 kcal/mol (1308.7030 without restraints) Performing minimization step: 3895. Total energy = 1313.7928 kcal/mol (1308.6487 without restraints) Performing minimization step: 3896. Total energy = 1313.7388 kcal/mol (1308.5942 without restraints) Performing minimization step: 3897. Total energy = 1313.6846 kcal/mol (1308.5396 without restraints) Performing minimization step: 3898. Total energy = 1313.6305 kcal/mol (1308.4852 without restraints) Performing minimization step: 3899. Total energy = 1313.5764 kcal/mol (1308.4306 without restraints) Performing minimization step: 3900. Total energy = 1313.5223 kcal/mol (1308.3762 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 1313.4684 kcal/mol (1308.3221 without restraints) Performing minimization step: 3902. Total energy = 1313.4147 kcal/mol (1308.2679 without restraints) Performing minimization step: 3903. Total energy = 1313.3609 kcal/mol (1308.2137 without restraints) Performing minimization step: 3904. Total energy = 1313.3070 kcal/mol (1308.1595 without restraints) Performing minimization step: 3905. Total energy = 1313.2536 kcal/mol (1308.1058 without restraints) Performing minimization step: 3906. Total energy = 1313.1999 kcal/mol (1308.0516 without restraints) Performing minimization step: 3907. Total energy = 1313.1461 kcal/mol (1307.9974 without restraints) Performing minimization step: 3908. Total energy = 1313.0923 kcal/mol (1307.9433 without restraints) Performing minimization step: 3909. Total energy = 1313.0385 kcal/mol (1307.8892 without restraints) Performing minimization step: 3910. Total energy = 1312.9849 kcal/mol (1307.8352 without restraints) Performing minimization step: 3911. Total energy = 1312.9310 kcal/mol (1307.7809 without restraints) Performing minimization step: 3912. Total energy = 1312.8774 kcal/mol (1307.7269 without restraints) Performing minimization step: 3913. Total energy = 1312.8238 kcal/mol (1307.6730 without restraints) Performing minimization step: 3914. Total energy = 1312.7702 kcal/mol (1307.6190 without restraints) Performing minimization step: 3915. Total energy = 1312.7167 kcal/mol (1307.5651 without restraints) Performing minimization step: 3916. Total energy = 1312.6633 kcal/mol (1307.5112 without restraints) Performing minimization step: 3917. Total energy = 1312.6098 kcal/mol (1307.4577 without restraints) Performing minimization step: 3918. Total energy = 1312.5565 kcal/mol (1307.4038 without restraints) Performing minimization step: 3919. Total energy = 1312.5035 kcal/mol (1307.3503 without restraints) Performing minimization step: 3920. Total energy = 1312.4500 kcal/mol (1307.2965 without restraints) Performing minimization step: 3921. Total energy = 1312.3967 kcal/mol (1307.2428 without restraints) Performing minimization step: 3922. Total energy = 1312.3434 kcal/mol (1307.1892 without restraints) Performing minimization step: 3923. Total energy = 1312.2901 kcal/mol (1307.1355 without restraints) Performing minimization step: 3924. Total energy = 1312.2368 kcal/mol (1307.0818 without restraints) Performing minimization step: 3925. Total energy = 1312.1835 kcal/mol (1307.0282 without restraints) Performing minimization step: 3926. Total energy = 1312.1302 kcal/mol (1306.9745 without restraints) Performing minimization step: 3927. Total energy = 1312.0769 kcal/mol (1306.9208 without restraints) Performing minimization step: 3928. Total energy = 1312.0237 kcal/mol (1306.8671 without restraints) Performing minimization step: 3929. Total energy = 1311.9706 kcal/mol (1306.8137 without restraints) Performing minimization step: 3930. Total energy = 1311.9174 kcal/mol (1306.7602 without restraints) Performing minimization step: 3931. Total energy = 1311.8645 kcal/mol (1306.7069 without restraints) Performing minimization step: 3932. Total energy = 1311.8114 kcal/mol (1306.6534 without restraints) Performing minimization step: 3933. Total energy = 1311.7582 kcal/mol (1306.5999 without restraints) Performing minimization step: 3934. Total energy = 1311.7053 kcal/mol (1306.5467 without restraints) Performing minimization step: 3935. Total energy = 1311.6522 kcal/mol (1306.4931 without restraints) Performing minimization step: 3936. Total energy = 1311.5992 kcal/mol (1306.4397 without restraints) Performing minimization step: 3937. Total energy = 1311.5460 kcal/mol (1306.3861 without restraints) Performing minimization step: 3938. Total energy = 1311.4928 kcal/mol (1306.3325 without restraints) Performing minimization step: 3939. Total energy = 1311.4396 kcal/mol (1306.2790 without restraints) Performing minimization step: 3940. Total energy = 1311.3867 kcal/mol (1306.2258 without restraints) Performing minimization step: 3941. Total energy = 1311.3339 kcal/mol (1306.1726 without restraints) Performing minimization step: 3942. Total energy = 1311.2811 kcal/mol (1306.1193 without restraints) Performing minimization step: 3943. Total energy = 1311.2282 kcal/mol (1306.0661 without restraints) Performing minimization step: 3944. Total energy = 1311.1752 kcal/mol (1306.0126 without restraints) Performing minimization step: 3945. Total energy = 1311.1224 kcal/mol (1305.9595 without restraints) Performing minimization step: 3946. Total energy = 1311.0696 kcal/mol (1305.9063 without restraints) Performing minimization step: 3947. Total energy = 1311.0169 kcal/mol (1305.8532 without restraints) Performing minimization step: 3948. Total energy = 1310.9639 kcal/mol (1305.7999 without restraints) Performing minimization step: 3949. Total energy = 1310.9113 kcal/mol (1305.7468 without restraints) Performing minimization step: 3950. Total energy = 1310.8586 kcal/mol (1305.6938 without restraints) Performing minimization step: 3951. Total energy = 1310.8059 kcal/mol (1305.6406 without restraints) Performing minimization step: 3952. Total energy = 1310.7534 kcal/mol (1305.5880 without restraints) Performing minimization step: 3953. Total energy = 1310.7010 kcal/mol (1305.5351 without restraints) Performing minimization step: 3954. Total energy = 1310.6484 kcal/mol (1305.4821 without restraints) Performing minimization step: 3955. Total energy = 1310.5959 kcal/mol (1305.4292 without restraints) Performing minimization step: 3956. Total energy = 1310.5434 kcal/mol (1305.3763 without restraints) Performing minimization step: 3957. Total energy = 1310.4911 kcal/mol (1305.3236 without restraints) Performing minimization step: 3958. Total energy = 1310.4387 kcal/mol (1305.2708 without restraints) Performing minimization step: 3959. Total energy = 1310.3863 kcal/mol (1305.2181 without restraints) Performing minimization step: 3960. Total energy = 1310.3337 kcal/mol (1305.1649 without restraints) Performing minimization step: 3961. Total energy = 1310.2811 kcal/mol (1305.1121 without restraints) Performing minimization step: 3962. Total energy = 1310.2288 kcal/mol (1305.0594 without restraints) Performing minimization step: 3963. Total energy = 1310.1765 kcal/mol (1305.0067 without restraints) Performing minimization step: 3964. Total energy = 1310.1239 kcal/mol (1304.9536 without restraints) Performing minimization step: 3965. Total energy = 1310.0711 kcal/mol (1304.9006 without restraints) Performing minimization step: 3966. Total energy = 1310.0189 kcal/mol (1304.8480 without restraints) Performing minimization step: 3967. Total energy = 1309.9667 kcal/mol (1304.7954 without restraints) Performing minimization step: 3968. Total energy = 1309.9145 kcal/mol (1304.7428 without restraints) Performing minimization step: 3969. Total energy = 1309.8623 kcal/mol (1304.6903 without restraints) Performing minimization step: 3970. Total energy = 1309.8100 kcal/mol (1304.6376 without restraints) Performing minimization step: 3971. Total energy = 1309.7582 kcal/mol (1304.5854 without restraints) Performing minimization step: 3972. Total energy = 1309.7061 kcal/mol (1304.5329 without restraints) Performing minimization step: 3973. Total energy = 1309.6545 kcal/mol (1304.4810 without restraints) Performing minimization step: 3974. Total energy = 1309.6026 kcal/mol (1304.4286 without restraints) Performing minimization step: 3975. Total energy = 1309.5503 kcal/mol (1304.3759 without restraints) Performing minimization step: 3976. Total energy = 1309.4982 kcal/mol (1304.3235 without restraints) Performing minimization step: 3977. Total energy = 1309.4463 kcal/mol (1304.2711 without restraints) Performing minimization step: 3978. Total energy = 1309.3944 kcal/mol (1304.2189 without restraints) Performing minimization step: 3979. Total energy = 1309.3425 kcal/mol (1304.1665 without restraints) Performing minimization step: 3980. Total energy = 1309.2906 kcal/mol (1304.1143 without restraints) Performing minimization step: 3981. Total energy = 1309.2383 kcal/mol (1304.0616 without restraints) Performing minimization step: 3982. Total energy = 1309.1862 kcal/mol (1304.0092 without restraints) Performing minimization step: 3983. Total energy = 1309.1338 kcal/mol (1303.9564 without restraints) Performing minimization step: 3984. Total energy = 1309.0820 kcal/mol (1303.9042 without restraints) Performing minimization step: 3985. Total energy = 1309.0305 kcal/mol (1303.8523 without restraints) Performing minimization step: 3986. Total energy = 1308.9787 kcal/mol (1303.8001 without restraints) Performing minimization step: 3987. Total energy = 1308.9270 kcal/mol (1303.7480 without restraints) Performing minimization step: 3988. Total energy = 1308.8753 kcal/mol (1303.6959 without restraints) Performing minimization step: 3989. Total energy = 1308.8238 kcal/mol (1303.6440 without restraints) Performing minimization step: 3990. Total energy = 1308.7719 kcal/mol (1303.5918 without restraints) Performing minimization step: 3991. Total energy = 1308.7203 kcal/mol (1303.5398 without restraints) Performing minimization step: 3992. Total energy = 1308.6686 kcal/mol (1303.4876 without restraints) Performing minimization step: 3993. Total energy = 1308.6172 kcal/mol (1303.4359 without restraints) Performing minimization step: 3994. Total energy = 1308.5653 kcal/mol (1303.3836 without restraints) Performing minimization step: 3995. Total energy = 1308.5138 kcal/mol (1303.3318 without restraints) Performing minimization step: 3996. Total energy = 1308.4626 kcal/mol (1303.2801 without restraints) Performing minimization step: 3997. Total energy = 1308.4111 kcal/mol (1303.2282 without restraints) Performing minimization step: 3998. Total energy = 1308.3597 kcal/mol (1303.1765 without restraints) Performing minimization step: 3999. Total energy = 1308.3081 kcal/mol (1303.1245 without restraints) Performing minimization step: 4000. Total energy = 1308.2567 kcal/mol (1303.0727 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 1308.2053 kcal/mol (1303.0209 without restraints) Performing minimization step: 4002. Total energy = 1308.1539 kcal/mol (1302.9691 without restraints) Performing minimization step: 4003. Total energy = 1308.1025 kcal/mol (1302.9173 without restraints) Performing minimization step: 4004. Total energy = 1308.0512 kcal/mol (1302.8656 without restraints) Performing minimization step: 4005. Total energy = 1307.9999 kcal/mol (1302.8139 without restraints) Performing minimization step: 4006. Total energy = 1307.9488 kcal/mol (1302.7625 without restraints) Performing minimization step: 4007. Total energy = 1307.8976 kcal/mol (1302.7108 without restraints) Performing minimization step: 4008. Total energy = 1307.8464 kcal/mol (1302.6592 without restraints) Performing minimization step: 4009. Total energy = 1307.7952 kcal/mol (1302.6077 without restraints) Performing minimization step: 4010. Total energy = 1307.7442 kcal/mol (1302.5563 without restraints) Performing minimization step: 4011. Total energy = 1307.6930 kcal/mol (1302.5047 without restraints) Performing minimization step: 4012. Total energy = 1307.6420 kcal/mol (1302.4534 without restraints) Performing minimization step: 4013. Total energy = 1307.5908 kcal/mol (1302.4016 without restraints) Performing minimization step: 4014. Total energy = 1307.5396 kcal/mol (1302.3501 without restraints) Performing minimization step: 4015. Total energy = 1307.4883 kcal/mol (1302.2985 without restraints) Performing minimization step: 4016. Total energy = 1307.4373 kcal/mol (1302.2470 without restraints) Performing minimization step: 4017. Total energy = 1307.3862 kcal/mol (1302.1955 without restraints) Performing minimization step: 4018. Total energy = 1307.3348 kcal/mol (1302.1438 without restraints) Performing minimization step: 4019. Total energy = 1307.2837 kcal/mol (1302.0922 without restraints) Performing minimization step: 4020. Total energy = 1307.2327 kcal/mol (1302.0409 without restraints) Performing minimization step: 4021. Total energy = 1307.1820 kcal/mol (1301.9899 without restraints) Performing minimization step: 4022. Total energy = 1307.1312 kcal/mol (1301.9386 without restraints) Performing minimization step: 4023. Total energy = 1307.0803 kcal/mol (1301.8874 without restraints) Performing minimization step: 4024. Total energy = 1307.0294 kcal/mol (1301.8361 without restraints) Performing minimization step: 4025. Total energy = 1306.9786 kcal/mol (1301.7849 without restraints) Performing minimization step: 4026. Total energy = 1306.9278 kcal/mol (1301.7337 without restraints) Performing minimization step: 4027. Total energy = 1306.8768 kcal/mol (1301.6822 without restraints) Performing minimization step: 4028. Total energy = 1306.8260 kcal/mol (1301.6311 without restraints) Performing minimization step: 4029. Total energy = 1306.7752 kcal/mol (1301.5799 without restraints) Performing minimization step: 4030. Total energy = 1306.7245 kcal/mol (1301.5288 without restraints) Performing minimization step: 4031. Total energy = 1306.6737 kcal/mol (1301.4776 without restraints) Performing minimization step: 4032. Total energy = 1306.6228 kcal/mol (1301.4263 without restraints) Performing minimization step: 4033. Total energy = 1306.5722 kcal/mol (1301.3753 without restraints) Performing minimization step: 4034. Total energy = 1306.5216 kcal/mol (1301.3243 without restraints) Performing minimization step: 4035. Total energy = 1306.4710 kcal/mol (1301.2733 without restraints) Performing minimization step: 4036. Total energy = 1306.4204 kcal/mol (1301.2224 without restraints) Performing minimization step: 4037. Total energy = 1306.3701 kcal/mol (1301.1716 without restraints) Performing minimization step: 4038. Total energy = 1306.3195 kcal/mol (1301.1207 without restraints) Performing minimization step: 4039. Total energy = 1306.2690 kcal/mol (1301.0698 without restraints) Performing minimization step: 4040. Total energy = 1306.2188 kcal/mol (1301.0192 without restraints) Performing minimization step: 4041. Total energy = 1306.1684 kcal/mol (1300.9684 without restraints) Performing minimization step: 4042. Total energy = 1306.1179 kcal/mol (1300.9176 without restraints) Performing minimization step: 4043. Total energy = 1306.0676 kcal/mol (1300.8668 without restraints) Performing minimization step: 4044. Total energy = 1306.0172 kcal/mol (1300.8160 without restraints) Performing minimization step: 4045. Total energy = 1305.9670 kcal/mol (1300.7654 without restraints) Performing minimization step: 4046. Total energy = 1305.9165 kcal/mol (1300.7144 without restraints) Performing minimization step: 4047. Total energy = 1305.8661 kcal/mol (1300.6638 without restraints) Performing minimization step: 4048. Total energy = 1305.8159 kcal/mol (1300.6131 without restraints) Performing minimization step: 4049. Total energy = 1305.7655 kcal/mol (1300.5624 without restraints) Performing minimization step: 4050. Total energy = 1305.7157 kcal/mol (1300.5121 without restraints) Performing minimization step: 4051. Total energy = 1305.6654 kcal/mol (1300.4614 without restraints) Performing minimization step: 4052. Total energy = 1305.6151 kcal/mol (1300.4108 without restraints) Performing minimization step: 4053. Total energy = 1305.5649 kcal/mol (1300.3602 without restraints) Performing minimization step: 4054. Total energy = 1305.5147 kcal/mol (1300.3096 without restraints) Performing minimization step: 4055. Total energy = 1305.4648 kcal/mol (1300.2593 without restraints) Performing minimization step: 4056. Total energy = 1305.4149 kcal/mol (1300.2090 without restraints) Performing minimization step: 4057. Total energy = 1305.3647 kcal/mol (1300.1584 without restraints) Performing minimization step: 4058. Total energy = 1305.3149 kcal/mol (1300.1082 without restraints) Performing minimization step: 4059. Total energy = 1305.2648 kcal/mol (1300.0577 without restraints) Performing minimization step: 4060. Total energy = 1305.2150 kcal/mol (1300.0075 without restraints) Performing minimization step: 4061. Total energy = 1305.1650 kcal/mol (1299.9571 without restraints) Performing minimization step: 4062. Total energy = 1305.1150 kcal/mol (1299.9067 without restraints) Performing minimization step: 4063. Total energy = 1305.0650 kcal/mol (1299.8564 without restraints) Performing minimization step: 4064. Total energy = 1305.0154 kcal/mol (1299.8064 without restraints) Performing minimization step: 4065. Total energy = 1304.9653 kcal/mol (1299.7559 without restraints) Performing minimization step: 4066. Total energy = 1304.9154 kcal/mol (1299.7056 without restraints) Performing minimization step: 4067. Total energy = 1304.8655 kcal/mol (1299.6553 without restraints) Performing minimization step: 4068. Total energy = 1304.8156 kcal/mol (1299.6050 without restraints) Performing minimization step: 4069. Total energy = 1304.7657 kcal/mol (1299.5547 without restraints) Performing minimization step: 4070. Total energy = 1304.7159 kcal/mol (1299.5045 without restraints) Performing minimization step: 4071. Total energy = 1304.6661 kcal/mol (1299.4543 without restraints) Performing minimization step: 4072. Total energy = 1304.6163 kcal/mol (1299.4041 without restraints) Performing minimization step: 4073. Total energy = 1304.5665 kcal/mol (1299.3539 without restraints) Performing minimization step: 4074. Total energy = 1304.5168 kcal/mol (1299.3039 without restraints) Performing minimization step: 4075. Total energy = 1304.4671 kcal/mol (1299.2537 without restraints) Performing minimization step: 4076. Total energy = 1304.4174 kcal/mol (1299.2037 without restraints) Performing minimization step: 4077. Total energy = 1304.3678 kcal/mol (1299.1536 without restraints) Performing minimization step: 4078. Total energy = 1304.3179 kcal/mol (1299.1033 without restraints) Performing minimization step: 4079. Total energy = 1304.2681 kcal/mol (1299.0533 without restraints) Performing minimization step: 4080. Total energy = 1304.2187 kcal/mol (1299.0033 without restraints) Performing minimization step: 4081. Total energy = 1304.1688 kcal/mol (1298.9531 without restraints) Performing minimization step: 4082. Total energy = 1304.1192 kcal/mol (1298.9031 without restraints) Performing minimization step: 4083. Total energy = 1304.0695 kcal/mol (1298.8530 without restraints) Performing minimization step: 4084. Total energy = 1304.0202 kcal/mol (1298.8033 without restraints) Performing minimization step: 4085. Total energy = 1303.9708 kcal/mol (1298.7534 without restraints) Performing minimization step: 4086. Total energy = 1303.9214 kcal/mol (1298.7037 without restraints) Performing minimization step: 4087. Total energy = 1303.8719 kcal/mol (1298.6538 without restraints) Performing minimization step: 4088. Total energy = 1303.8225 kcal/mol (1298.6040 without restraints) Performing minimization step: 4089. Total energy = 1303.7730 kcal/mol (1298.5542 without restraints) Performing minimization step: 4090. Total energy = 1303.7235 kcal/mol (1298.5042 without restraints) Performing minimization step: 4091. Total energy = 1303.6737 kcal/mol (1298.4540 without restraints) Performing minimization step: 4092. Total energy = 1303.6245 kcal/mol (1298.4045 without restraints) Performing minimization step: 4093. Total energy = 1303.5752 kcal/mol (1298.3547 without restraints) Performing minimization step: 4094. Total energy = 1303.5259 kcal/mol (1298.3050 without restraints) Performing minimization step: 4095. Total energy = 1303.4766 kcal/mol (1298.2553 without restraints) Performing minimization step: 4096. Total energy = 1303.4274 kcal/mol (1298.2057 without restraints) Performing minimization step: 4097. Total energy = 1303.3781 kcal/mol (1298.1561 without restraints) Performing minimization step: 4098. Total energy = 1303.3289 kcal/mol (1298.1065 without restraints) Performing minimization step: 4099. Total energy = 1303.2797 kcal/mol (1298.0569 without restraints) Performing minimization step: 4100. Total energy = 1303.2305 kcal/mol (1298.0072 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 1303.1813 kcal/mol (1297.9577 without restraints) Performing minimization step: 4102. Total energy = 1303.1322 kcal/mol (1297.9082 without restraints) Performing minimization step: 4103. Total energy = 1303.0828 kcal/mol (1297.8584 without restraints) Performing minimization step: 4104. Total energy = 1303.0340 kcal/mol (1297.8092 without restraints) Performing minimization step: 4105. Total energy = 1302.9849 kcal/mol (1297.7597 without restraints) Performing minimization step: 4106. Total energy = 1302.9358 kcal/mol (1297.7102 without restraints) Performing minimization step: 4107. Total energy = 1302.8866 kcal/mol (1297.6604 without restraints) Performing minimization step: 4108. Total energy = 1302.8376 kcal/mol (1297.6112 without restraints) Performing minimization step: 4109. Total energy = 1302.7886 kcal/mol (1297.5618 without restraints) Performing minimization step: 4110. Total energy = 1302.7396 kcal/mol (1297.5124 without restraints) Performing minimization step: 4111. Total energy = 1302.6907 kcal/mol (1297.4631 without restraints) Performing minimization step: 4112. Total energy = 1302.6417 kcal/mol (1297.4138 without restraints) Performing minimization step: 4113. Total energy = 1302.5929 kcal/mol (1297.3646 without restraints) Performing minimization step: 4114. Total energy = 1302.5439 kcal/mol (1297.3152 without restraints) Performing minimization step: 4115. Total energy = 1302.4950 kcal/mol (1297.2658 without restraints) Performing minimization step: 4116. Total energy = 1302.4463 kcal/mol (1297.2168 without restraints) Performing minimization step: 4117. Total energy = 1302.3977 kcal/mol (1297.1680 without restraints) Performing minimization step: 4118. Total energy = 1302.3491 kcal/mol (1297.1187 without restraints) Performing minimization step: 4119. Total energy = 1302.3003 kcal/mol (1297.0696 without restraints) Performing minimization step: 4120. Total energy = 1302.2512 kcal/mol (1297.0201 without restraints) Performing minimization step: 4121. Total energy = 1302.2026 kcal/mol (1296.9711 without restraints) Performing minimization step: 4122. Total energy = 1302.1539 kcal/mol (1296.9220 without restraints) Performing minimization step: 4123. Total energy = 1302.1050 kcal/mol (1296.8727 without restraints) Performing minimization step: 4124. Total energy = 1302.0563 kcal/mol (1296.8237 without restraints) Performing minimization step: 4125. Total energy = 1302.0075 kcal/mol (1296.7744 without restraints) Performing minimization step: 4126. Total energy = 1301.9589 kcal/mol (1296.7255 without restraints) Performing minimization step: 4127. Total energy = 1301.9100 kcal/mol (1296.6762 without restraints) Performing minimization step: 4128. Total energy = 1301.8612 kcal/mol (1296.6270 without restraints) Performing minimization step: 4129. Total energy = 1301.8125 kcal/mol (1296.5777 without restraints) Performing minimization step: 4130. Total energy = 1301.7639 kcal/mol (1296.5288 without restraints) Performing minimization step: 4131. Total energy = 1301.7154 kcal/mol (1296.4799 without restraints) Performing minimization step: 4132. Total energy = 1301.6668 kcal/mol (1296.4310 without restraints) Performing minimization step: 4133. Total energy = 1301.6185 kcal/mol (1296.3825 without restraints) Performing minimization step: 4134. Total energy = 1301.5700 kcal/mol (1296.3334 without restraints) Performing minimization step: 4135. Total energy = 1301.5216 kcal/mol (1296.2846 without restraints) Performing minimization step: 4136. Total energy = 1301.4731 kcal/mol (1296.2358 without restraints) Performing minimization step: 4137. Total energy = 1301.4249 kcal/mol (1296.1871 without restraints) Performing minimization step: 4138. Total energy = 1301.3767 kcal/mol (1296.1386 without restraints) Performing minimization step: 4139. Total energy = 1301.3284 kcal/mol (1296.0898 without restraints) Performing minimization step: 4140. Total energy = 1301.2802 kcal/mol (1296.0413 without restraints) Performing minimization step: 4141. Total energy = 1301.2321 kcal/mol (1295.9927 without restraints) Performing minimization step: 4142. Total energy = 1301.1837 kcal/mol (1295.9440 without restraints) Performing minimization step: 4143. Total energy = 1301.1354 kcal/mol (1295.8952 without restraints) Performing minimization step: 4144. Total energy = 1301.0867 kcal/mol (1295.8461 without restraints) Performing minimization step: 4145. Total energy = 1301.0384 kcal/mol (1295.7975 without restraints) Performing minimization step: 4146. Total energy = 1300.9902 kcal/mol (1295.7488 without restraints) Performing minimization step: 4147. Total energy = 1300.9417 kcal/mol (1295.6999 without restraints) Performing minimization step: 4148. Total energy = 1300.8935 kcal/mol (1295.6513 without restraints) Performing minimization step: 4149. Total energy = 1300.8453 kcal/mol (1295.6028 without restraints) Performing minimization step: 4150. Total energy = 1300.7976 kcal/mol (1295.5546 without restraints) Performing minimization step: 4151. Total energy = 1300.7494 kcal/mol (1295.5060 without restraints) Performing minimization step: 4152. Total energy = 1300.7012 kcal/mol (1295.4575 without restraints) Performing minimization step: 4153. Total energy = 1300.6531 kcal/mol (1295.4090 without restraints) Performing minimization step: 4154. Total energy = 1300.6050 kcal/mol (1295.3605 without restraints) Performing minimization step: 4155. Total energy = 1300.5567 kcal/mol (1295.3118 without restraints) Performing minimization step: 4156. Total energy = 1300.5086 kcal/mol (1295.2633 without restraints) Performing minimization step: 4157. Total energy = 1300.4604 kcal/mol (1295.2147 without restraints) Performing minimization step: 4158. Total energy = 1300.4123 kcal/mol (1295.1663 without restraints) Performing minimization step: 4159. Total energy = 1300.3644 kcal/mol (1295.1179 without restraints) Performing minimization step: 4160. Total energy = 1300.3164 kcal/mol (1295.0696 without restraints) Performing minimization step: 4161. Total energy = 1300.2681 kcal/mol (1295.0208 without restraints) Performing minimization step: 4162. Total energy = 1300.2196 kcal/mol (1294.9720 without restraints) Performing minimization step: 4163. Total energy = 1300.1719 kcal/mol (1294.9241 without restraints) Performing minimization step: 4164. Total energy = 1300.1243 kcal/mol (1294.8759 without restraints) Performing minimization step: 4165. Total energy = 1300.0764 kcal/mol (1294.8276 without restraints) Performing minimization step: 4166. Total energy = 1300.0285 kcal/mol (1294.7793 without restraints) Performing minimization step: 4167. Total energy = 1299.9804 kcal/mol (1294.7308 without restraints) Performing minimization step: 4168. Total energy = 1299.9326 kcal/mol (1294.6826 without restraints) Performing minimization step: 4169. Total energy = 1299.8848 kcal/mol (1294.6344 without restraints) Performing minimization step: 4170. Total energy = 1299.8374 kcal/mol (1294.5866 without restraints) Performing minimization step: 4171. Total energy = 1299.7896 kcal/mol (1294.5385 without restraints) Performing minimization step: 4172. Total energy = 1299.7419 kcal/mol (1294.4904 without restraints) Performing minimization step: 4173. Total energy = 1299.6939 kcal/mol (1294.4420 without restraints) Performing minimization step: 4174. Total energy = 1299.6461 kcal/mol (1294.3938 without restraints) Performing minimization step: 4175. Total energy = 1299.5981 kcal/mol (1294.3454 without restraints) Performing minimization step: 4176. Total energy = 1299.5504 kcal/mol (1294.2973 without restraints) Performing minimization step: 4177. Total energy = 1299.5028 kcal/mol (1294.2493 without restraints) Performing minimization step: 4178. Total energy = 1299.4551 kcal/mol (1294.2012 without restraints) Performing minimization step: 4179. Total energy = 1299.4075 kcal/mol (1294.1532 without restraints) Performing minimization step: 4180. Total energy = 1299.3593 kcal/mol (1294.1046 without restraints) Performing minimization step: 4181. Total energy = 1299.3117 kcal/mol (1294.0566 without restraints) Performing minimization step: 4182. Total energy = 1299.2642 kcal/mol (1294.0087 without restraints) Performing minimization step: 4183. Total energy = 1299.2169 kcal/mol (1293.9611 without restraints) Performing minimization step: 4184. Total energy = 1299.1696 kcal/mol (1293.9134 without restraints) Performing minimization step: 4185. Total energy = 1299.1221 kcal/mol (1293.8655 without restraints) Performing minimization step: 4186. Total energy = 1299.0747 kcal/mol (1293.8176 without restraints) Performing minimization step: 4187. Total energy = 1299.0274 kcal/mol (1293.7701 without restraints) Performing minimization step: 4188. Total energy = 1298.9802 kcal/mol (1293.7224 without restraints) Performing minimization step: 4189. Total energy = 1298.9325 kcal/mol (1293.6743 without restraints) Performing minimization step: 4190. Total energy = 1298.8854 kcal/mol (1293.6268 without restraints) Performing minimization step: 4191. Total energy = 1298.8379 kcal/mol (1293.5790 without restraints) Performing minimization step: 4192. Total energy = 1298.7907 kcal/mol (1293.5314 without restraints) Performing minimization step: 4193. Total energy = 1298.7434 kcal/mol (1293.4836 without restraints) Performing minimization step: 4194. Total energy = 1298.6961 kcal/mol (1293.4359 without restraints) Performing minimization step: 4195. Total energy = 1298.6485 kcal/mol (1293.3880 without restraints) Performing minimization step: 4196. Total energy = 1298.6012 kcal/mol (1293.3403 without restraints) Performing minimization step: 4197. Total energy = 1298.5539 kcal/mol (1293.2926 without restraints) Performing minimization step: 4198. Total energy = 1298.5067 kcal/mol (1293.2450 without restraints) Performing minimization step: 4199. Total energy = 1298.4594 kcal/mol (1293.1973 without restraints) Performing minimization step: 4200. Total energy = 1298.4123 kcal/mol (1293.1498 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 1298.3651 kcal/mol (1293.1020 without restraints) Performing minimization step: 4202. Total energy = 1298.3178 kcal/mol (1293.0545 without restraints) Performing minimization step: 4203. Total energy = 1298.2705 kcal/mol (1293.0068 without restraints) Performing minimization step: 4204. Total energy = 1298.2232 kcal/mol (1292.9592 without restraints) Performing minimization step: 4205. Total energy = 1298.1761 kcal/mol (1292.9116 without restraints) Performing minimization step: 4206. Total energy = 1298.1289 kcal/mol (1292.8641 without restraints) Performing minimization step: 4207. Total energy = 1298.0819 kcal/mol (1292.8167 without restraints) Performing minimization step: 4208. Total energy = 1298.0349 kcal/mol (1292.7693 without restraints) Performing minimization step: 4209. Total energy = 1297.9878 kcal/mol (1292.7218 without restraints) Performing minimization step: 4210. Total energy = 1297.9408 kcal/mol (1292.6744 without restraints) Performing minimization step: 4211. Total energy = 1297.8938 kcal/mol (1292.6270 without restraints) Performing minimization step: 4212. Total energy = 1297.8468 kcal/mol (1292.5796 without restraints) Performing minimization step: 4213. Total energy = 1297.8000 kcal/mol (1292.5324 without restraints) Performing minimization step: 4214. Total energy = 1297.7528 kcal/mol (1292.4849 without restraints) Performing minimization step: 4215. Total energy = 1297.7059 kcal/mol (1292.4376 without restraints) Performing minimization step: 4216. Total energy = 1297.6591 kcal/mol (1292.3904 without restraints) Performing minimization step: 4217. Total energy = 1297.6119 kcal/mol (1292.3428 without restraints) Performing minimization step: 4218. Total energy = 1297.5650 kcal/mol (1292.2955 without restraints) Performing minimization step: 4219. Total energy = 1297.5183 kcal/mol (1292.2484 without restraints) Performing minimization step: 4220. Total energy = 1297.4712 kcal/mol (1292.2009 without restraints) Performing minimization step: 4221. Total energy = 1297.4243 kcal/mol (1292.1537 without restraints) Performing minimization step: 4222. Total energy = 1297.3774 kcal/mol (1292.1063 without restraints) Performing minimization step: 4223. Total energy = 1297.3306 kcal/mol (1292.0592 without restraints) Performing minimization step: 4224. Total energy = 1297.2838 kcal/mol (1292.0120 without restraints) Performing minimization step: 4225. Total energy = 1297.2371 kcal/mol (1291.9650 without restraints) Performing minimization step: 4226. Total energy = 1297.1905 kcal/mol (1291.9179 without restraints) Performing minimization step: 4227. Total energy = 1297.1439 kcal/mol (1291.8710 without restraints) Performing minimization step: 4228. Total energy = 1297.0972 kcal/mol (1291.8239 without restraints) Performing minimization step: 4229. Total energy = 1297.0505 kcal/mol (1291.7768 without restraints) Performing minimization step: 4230. Total energy = 1297.0038 kcal/mol (1291.7297 without restraints) Performing minimization step: 4231. Total energy = 1296.9574 kcal/mol (1291.6829 without restraints) Performing minimization step: 4232. Total energy = 1296.9107 kcal/mol (1291.6358 without restraints) Performing minimization step: 4233. Total energy = 1296.8640 kcal/mol (1291.5887 without restraints) Performing minimization step: 4234. Total energy = 1296.8171 kcal/mol (1291.5414 without restraints) Performing minimization step: 4235. Total energy = 1296.7703 kcal/mol (1291.4942 without restraints) Performing minimization step: 4236. Total energy = 1296.7237 kcal/mol (1291.4472 without restraints) Performing minimization step: 4237. Total energy = 1296.6771 kcal/mol (1291.4003 without restraints) Performing minimization step: 4238. Total energy = 1296.6306 kcal/mol (1291.3534 without restraints) Performing minimization step: 4239. Total energy = 1296.5842 kcal/mol (1291.3064 without restraints) Performing minimization step: 4240. Total energy = 1296.5380 kcal/mol (1291.2600 without restraints) Performing minimization step: 4241. Total energy = 1296.4918 kcal/mol (1291.2134 without restraints) Performing minimization step: 4242. Total energy = 1296.4453 kcal/mol (1291.1665 without restraints) Performing minimization step: 4243. Total energy = 1296.3989 kcal/mol (1291.1197 without restraints) Performing minimization step: 4244. Total energy = 1296.3522 kcal/mol (1291.0724 without restraints) Performing minimization step: 4245. Total energy = 1296.3055 kcal/mol (1291.0256 without restraints) Performing minimization step: 4246. Total energy = 1296.2591 kcal/mol (1290.9788 without restraints) Performing minimization step: 4247. Total energy = 1296.2125 kcal/mol (1290.9318 without restraints) Performing minimization step: 4248. Total energy = 1296.1661 kcal/mol (1290.8850 without restraints) Performing minimization step: 4249. Total energy = 1296.1195 kcal/mol (1290.8381 without restraints) Performing minimization step: 4250. Total energy = 1296.0733 kcal/mol (1290.7916 without restraints) Performing minimization step: 4251. Total energy = 1296.0271 kcal/mol (1290.7449 without restraints) Performing minimization step: 4252. Total energy = 1295.9808 kcal/mol (1290.6982 without restraints) Performing minimization step: 4253. Total energy = 1295.9345 kcal/mol (1290.6515 without restraints) Performing minimization step: 4254. Total energy = 1295.8876 kcal/mol (1290.6042 without restraints) Performing minimization step: 4255. Total energy = 1295.8412 kcal/mol (1290.5574 without restraints) Performing minimization step: 4256. Total energy = 1295.7950 kcal/mol (1290.5108 without restraints) Performing minimization step: 4257. Total energy = 1295.7486 kcal/mol (1290.4640 without restraints) Performing minimization step: 4258. Total energy = 1295.7024 kcal/mol (1290.4175 without restraints) Performing minimization step: 4259. Total energy = 1295.6562 kcal/mol (1290.3709 without restraints) Performing minimization step: 4260. Total energy = 1295.6106 kcal/mol (1290.3249 without restraints) Performing minimization step: 4261. Total energy = 1295.5644 kcal/mol (1290.2784 without restraints) Performing minimization step: 4262. Total energy = 1295.5183 kcal/mol (1290.2318 without restraints) Performing minimization step: 4263. Total energy = 1295.4722 kcal/mol (1290.1854 without restraints) Performing minimization step: 4264. Total energy = 1295.4264 kcal/mol (1290.1391 without restraints) Performing minimization step: 4265. Total energy = 1295.3807 kcal/mol (1290.0931 without restraints) Performing minimization step: 4266. Total energy = 1295.3347 kcal/mol (1290.0467 without restraints) Performing minimization step: 4267. Total energy = 1295.2886 kcal/mol (1290.0003 without restraints) Performing minimization step: 4268. Total energy = 1295.2425 kcal/mol (1289.9537 without restraints) Performing minimization step: 4269. Total energy = 1295.1968 kcal/mol (1289.9077 without restraints) Performing minimization step: 4270. Total energy = 1295.1507 kcal/mol (1289.8612 without restraints) Performing minimization step: 4271. Total energy = 1295.1048 kcal/mol (1289.8149 without restraints) Performing minimization step: 4272. Total energy = 1295.0586 kcal/mol (1289.7683 without restraints) Performing minimization step: 4273. Total energy = 1295.0127 kcal/mol (1289.7220 without restraints) Performing minimization step: 4274. Total energy = 1294.9664 kcal/mol (1289.6753 without restraints) Performing minimization step: 4275. Total energy = 1294.9205 kcal/mol (1289.6290 without restraints) Performing minimization step: 4276. Total energy = 1294.8749 kcal/mol (1289.5830 without restraints) Performing minimization step: 4277. Total energy = 1294.8290 kcal/mol (1289.5368 without restraints) Performing minimization step: 4278. Total energy = 1294.7826 kcal/mol (1289.4900 without restraints) Performing minimization step: 4279. Total energy = 1294.7368 kcal/mol (1289.4438 without restraints) Performing minimization step: 4280. Total energy = 1294.6908 kcal/mol (1289.3974 without restraints) Performing minimization step: 4281. Total energy = 1294.6450 kcal/mol (1289.3513 without restraints) Performing minimization step: 4282. Total energy = 1294.5992 kcal/mol (1289.3049 without restraints) Performing minimization step: 4283. Total energy = 1294.5533 kcal/mol (1289.2588 without restraints) Performing minimization step: 4284. Total energy = 1294.5075 kcal/mol (1289.2127 without restraints) Performing minimization step: 4285. Total energy = 1294.4619 kcal/mol (1289.1666 without restraints) Performing minimization step: 4286. Total energy = 1294.4162 kcal/mol (1289.1205 without restraints) Performing minimization step: 4287. Total energy = 1294.3705 kcal/mol (1289.0745 without restraints) Performing minimization step: 4288. Total energy = 1294.3243 kcal/mol (1289.0279 without restraints) Performing minimization step: 4289. Total energy = 1294.2788 kcal/mol (1288.9821 without restraints) Performing minimization step: 4290. Total energy = 1294.2332 kcal/mol (1288.9361 without restraints) Performing minimization step: 4291. Total energy = 1294.1876 kcal/mol (1288.8900 without restraints) Performing minimization step: 4292. Total energy = 1294.1420 kcal/mol (1288.8441 without restraints) Performing minimization step: 4293. Total energy = 1294.0962 kcal/mol (1288.7979 without restraints) Performing minimization step: 4294. Total energy = 1294.0504 kcal/mol (1288.7517 without restraints) Performing minimization step: 4295. Total energy = 1294.0049 kcal/mol (1288.7058 without restraints) Performing minimization step: 4296. Total energy = 1293.9593 kcal/mol (1288.6598 without restraints) Performing minimization step: 4297. Total energy = 1293.9140 kcal/mol (1288.6141 without restraints) Performing minimization step: 4298. Total energy = 1293.8684 kcal/mol (1288.5682 without restraints) Performing minimization step: 4299. Total energy = 1293.8231 kcal/mol (1288.5226 without restraints) Performing minimization step: 4300. Total energy = 1293.7777 kcal/mol (1288.4768 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 1293.7323 kcal/mol (1288.4310 without restraints) Performing minimization step: 4302. Total energy = 1293.6868 kcal/mol (1288.3851 without restraints) Performing minimization step: 4303. Total energy = 1293.6413 kcal/mol (1288.3392 without restraints) Performing minimization step: 4304. Total energy = 1293.5959 kcal/mol (1288.2935 without restraints) Performing minimization step: 4305. Total energy = 1293.5504 kcal/mol (1288.2475 without restraints) Performing minimization step: 4306. Total energy = 1293.5049 kcal/mol (1288.2017 without restraints) Performing minimization step: 4307. Total energy = 1293.4596 kcal/mol (1288.1560 without restraints) Performing minimization step: 4308. Total energy = 1293.4141 kcal/mol (1288.1101 without restraints) Performing minimization step: 4309. Total energy = 1293.3687 kcal/mol (1288.0644 without restraints) Performing minimization step: 4310. Total energy = 1293.3232 kcal/mol (1288.0185 without restraints) Performing minimization step: 4311. Total energy = 1293.2779 kcal/mol (1287.9728 without restraints) Performing minimization step: 4312. Total energy = 1293.2326 kcal/mol (1287.9271 without restraints) Performing minimization step: 4313. Total energy = 1293.1873 kcal/mol (1287.8815 without restraints) Performing minimization step: 4314. Total energy = 1293.1421 kcal/mol (1287.8359 without restraints) Performing minimization step: 4315. Total energy = 1293.0969 kcal/mol (1287.7903 without restraints) Performing minimization step: 4316. Total energy = 1293.0517 kcal/mol (1287.7447 without restraints) Performing minimization step: 4317. Total energy = 1293.0065 kcal/mol (1287.6992 without restraints) Performing minimization step: 4318. Total energy = 1292.9613 kcal/mol (1287.6536 without restraints) Performing minimization step: 4319. Total energy = 1292.9161 kcal/mol (1287.6080 without restraints) Performing minimization step: 4320. Total energy = 1292.8710 kcal/mol (1287.5625 without restraints) Performing minimization step: 4321. Total energy = 1292.8258 kcal/mol (1287.5170 without restraints) Performing minimization step: 4322. Total energy = 1292.7805 kcal/mol (1287.4713 without restraints) Performing minimization step: 4323. Total energy = 1292.7352 kcal/mol (1287.4256 without restraints) Performing minimization step: 4324. Total energy = 1292.6902 kcal/mol (1287.3803 without restraints) Performing minimization step: 4325. Total energy = 1292.6453 kcal/mol (1287.3349 without restraints) Performing minimization step: 4326. Total energy = 1292.6004 kcal/mol (1287.2897 without restraints) Performing minimization step: 4327. Total energy = 1292.5556 kcal/mol (1287.2445 without restraints) Performing minimization step: 4328. Total energy = 1292.5106 kcal/mol (1287.1991 without restraints) Performing minimization step: 4329. Total energy = 1292.4658 kcal/mol (1287.1539 without restraints) Performing minimization step: 4330. Total energy = 1292.4208 kcal/mol (1287.1086 without restraints) Performing minimization step: 4331. Total energy = 1292.3761 kcal/mol (1287.0634 without restraints) Performing minimization step: 4332. Total energy = 1292.3311 kcal/mol (1287.0181 without restraints) Performing minimization step: 4333. Total energy = 1292.2862 kcal/mol (1286.9728 without restraints) Performing minimization step: 4334. Total energy = 1292.2413 kcal/mol (1286.9275 without restraints) Performing minimization step: 4335. Total energy = 1292.1963 kcal/mol (1286.8822 without restraints) Performing minimization step: 4336. Total energy = 1292.1516 kcal/mol (1286.8373 without restraints) Performing minimization step: 4337. Total energy = 1292.1069 kcal/mol (1286.7921 without restraints) Performing minimization step: 4338. Total energy = 1292.0621 kcal/mol (1286.7468 without restraints) Performing minimization step: 4339. Total energy = 1292.0171 kcal/mol (1286.7014 without restraints) Performing minimization step: 4340. Total energy = 1291.9723 kcal/mol (1286.6564 without restraints) Performing minimization step: 4341. Total energy = 1291.9278 kcal/mol (1286.6116 without restraints) Performing minimization step: 4342. Total energy = 1291.8831 kcal/mol (1286.5664 without restraints) Performing minimization step: 4343. Total energy = 1291.8381 kcal/mol (1286.5211 without restraints) Performing minimization step: 4344. Total energy = 1291.7934 kcal/mol (1286.4760 without restraints) Performing minimization step: 4345. Total energy = 1291.7487 kcal/mol (1286.4310 without restraints) Performing minimization step: 4346. Total energy = 1291.7043 kcal/mol (1286.3861 without restraints) Performing minimization step: 4347. Total energy = 1291.6597 kcal/mol (1286.3412 without restraints) Performing minimization step: 4348. Total energy = 1291.6150 kcal/mol (1286.2961 without restraints) Performing minimization step: 4349. Total energy = 1291.5702 kcal/mol (1286.2508 without restraints) Performing minimization step: 4350. Total energy = 1291.5254 kcal/mol (1286.2057 without restraints) Performing minimization step: 4351. Total energy = 1291.4806 kcal/mol (1286.1605 without restraints) Performing minimization step: 4352. Total energy = 1291.4356 kcal/mol (1286.1151 without restraints) Performing minimization step: 4353. Total energy = 1291.3909 kcal/mol (1286.0701 without restraints) Performing minimization step: 4354. Total energy = 1291.3467 kcal/mol (1286.0256 without restraints) Performing minimization step: 4355. Total energy = 1291.3021 kcal/mol (1285.9806 without restraints) Performing minimization step: 4356. Total energy = 1291.2576 kcal/mol (1285.9356 without restraints) Performing minimization step: 4357. Total energy = 1291.2128 kcal/mol (1285.8905 without restraints) Performing minimization step: 4358. Total energy = 1291.1682 kcal/mol (1285.8456 without restraints) Performing minimization step: 4359. Total energy = 1291.1233 kcal/mol (1285.8002 without restraints) Performing minimization step: 4360. Total energy = 1291.0788 kcal/mol (1285.7554 without restraints) Performing minimization step: 4361. Total energy = 1291.0343 kcal/mol (1285.7105 without restraints) Performing minimization step: 4362. Total energy = 1290.9899 kcal/mol (1285.6659 without restraints) Performing minimization step: 4363. Total energy = 1290.9455 kcal/mol (1285.6210 without restraints) Performing minimization step: 4364. Total energy = 1290.9010 kcal/mol (1285.5762 without restraints) Performing minimization step: 4365. Total energy = 1290.8565 kcal/mol (1285.5313 without restraints) Performing minimization step: 4366. Total energy = 1290.8121 kcal/mol (1285.4865 without restraints) Performing minimization step: 4367. Total energy = 1290.7677 kcal/mol (1285.4417 without restraints) Performing minimization step: 4368. Total energy = 1290.7233 kcal/mol (1285.3970 without restraints) Performing minimization step: 4369. Total energy = 1290.6792 kcal/mol (1285.3524 without restraints) Performing minimization step: 4370. Total energy = 1290.6348 kcal/mol (1285.3077 without restraints) Performing minimization step: 4371. Total energy = 1290.5904 kcal/mol (1285.2630 without restraints) Performing minimization step: 4372. Total energy = 1290.5461 kcal/mol (1285.2183 without restraints) Performing minimization step: 4373. Total energy = 1290.5018 kcal/mol (1285.1736 without restraints) Performing minimization step: 4374. Total energy = 1290.4575 kcal/mol (1285.1289 without restraints) Performing minimization step: 4375. Total energy = 1290.4128 kcal/mol (1285.0838 without restraints) Performing minimization step: 4376. Total energy = 1290.3687 kcal/mol (1285.0394 without restraints) Performing minimization step: 4377. Total energy = 1290.3244 kcal/mol (1284.9948 without restraints) Performing minimization step: 4378. Total energy = 1290.2802 kcal/mol (1284.9502 without restraints) Performing minimization step: 4379. Total energy = 1290.2361 kcal/mol (1284.9058 without restraints) Performing minimization step: 4380. Total energy = 1290.1919 kcal/mol (1284.8612 without restraints) Performing minimization step: 4381. Total energy = 1290.1475 kcal/mol (1284.8164 without restraints) Performing minimization step: 4382. Total energy = 1290.1035 kcal/mol (1284.7722 without restraints) Performing minimization step: 4383. Total energy = 1290.0595 kcal/mol (1284.7276 without restraints) Performing minimization step: 4384. Total energy = 1290.0153 kcal/mol (1284.6831 without restraints) Performing minimization step: 4385. Total energy = 1289.9712 kcal/mol (1284.6386 without restraints) Performing minimization step: 4386. Total energy = 1289.9270 kcal/mol (1284.5941 without restraints) Performing minimization step: 4387. Total energy = 1289.8829 kcal/mol (1284.5496 without restraints) Performing minimization step: 4388. Total energy = 1289.8388 kcal/mol (1284.5052 without restraints) Performing minimization step: 4389. Total energy = 1289.7947 kcal/mol (1284.4607 without restraints) Performing minimization step: 4390. Total energy = 1289.7507 kcal/mol (1284.4163 without restraints) Performing minimization step: 4391. Total energy = 1289.7066 kcal/mol (1284.3719 without restraints) Performing minimization step: 4392. Total energy = 1289.6628 kcal/mol (1284.3277 without restraints) Performing minimization step: 4393. Total energy = 1289.6190 kcal/mol (1284.2836 without restraints) Performing minimization step: 4394. Total energy = 1289.5750 kcal/mol (1284.2392 without restraints) Performing minimization step: 4395. Total energy = 1289.5310 kcal/mol (1284.1948 without restraints) Performing minimization step: 4396. Total energy = 1289.4872 kcal/mol (1284.1506 without restraints) Performing minimization step: 4397. Total energy = 1289.4432 kcal/mol (1284.1063 without restraints) Performing minimization step: 4398. Total energy = 1289.3990 kcal/mol (1284.0617 without restraints) Performing minimization step: 4399. Total energy = 1289.3551 kcal/mol (1284.0174 without restraints) Performing minimization step: 4400. Total energy = 1289.3112 kcal/mol (1283.9732 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 1289.2675 kcal/mol (1283.9291 without restraints) Performing minimization step: 4402. Total energy = 1289.2239 kcal/mol (1283.8851 without restraints) Performing minimization step: 4403. Total energy = 1289.1800 kcal/mol (1283.8409 without restraints) Performing minimization step: 4404. Total energy = 1289.1364 kcal/mol (1283.7970 without restraints) Performing minimization step: 4405. Total energy = 1289.0930 kcal/mol (1283.7532 without restraints) Performing minimization step: 4406. Total energy = 1289.0492 kcal/mol (1283.7090 without restraints) Performing minimization step: 4407. Total energy = 1289.0055 kcal/mol (1283.6651 without restraints) Performing minimization step: 4408. Total energy = 1288.9616 kcal/mol (1283.6208 without restraints) Performing minimization step: 4409. Total energy = 1288.9179 kcal/mol (1283.5766 without restraints) Performing minimization step: 4410. Total energy = 1288.8739 kcal/mol (1283.5323 without restraints) Performing minimization step: 4411. Total energy = 1288.8302 kcal/mol (1283.4882 without restraints) Performing minimization step: 4412. Total energy = 1288.7866 kcal/mol (1283.4443 without restraints) Performing minimization step: 4413. Total energy = 1288.7432 kcal/mol (1283.4006 without restraints) Performing minimization step: 4414. Total energy = 1288.6997 kcal/mol (1283.3567 without restraints) Performing minimization step: 4415. Total energy = 1288.6563 kcal/mol (1283.3129 without restraints) Performing minimization step: 4416. Total energy = 1288.6125 kcal/mol (1283.2686 without restraints) Performing minimization step: 4417. Total energy = 1288.5685 kcal/mol (1283.2244 without restraints) Performing minimization step: 4418. Total energy = 1288.5249 kcal/mol (1283.1803 without restraints) Performing minimization step: 4419. Total energy = 1288.4817 kcal/mol (1283.1368 without restraints) Performing minimization step: 4420. Total energy = 1288.4380 kcal/mol (1283.0928 without restraints) Performing minimization step: 4421. Total energy = 1288.3944 kcal/mol (1283.0488 without restraints) Performing minimization step: 4422. Total energy = 1288.3508 kcal/mol (1283.0049 without restraints) Performing minimization step: 4423. Total energy = 1288.3072 kcal/mol (1282.9609 without restraints) Performing minimization step: 4424. Total energy = 1288.2634 kcal/mol (1282.9168 without restraints) Performing minimization step: 4425. Total energy = 1288.2199 kcal/mol (1282.8728 without restraints) Performing minimization step: 4426. Total energy = 1288.1761 kcal/mol (1282.8287 without restraints) Performing minimization step: 4427. Total energy = 1288.1326 kcal/mol (1282.7848 without restraints) Performing minimization step: 4428. Total energy = 1288.0892 kcal/mol (1282.7411 without restraints) Performing minimization step: 4429. Total energy = 1288.0458 kcal/mol (1282.6973 without restraints) Performing minimization step: 4430. Total energy = 1288.0025 kcal/mol (1282.6536 without restraints) Performing minimization step: 4431. Total energy = 1287.9590 kcal/mol (1282.6098 without restraints) Performing minimization step: 4432. Total energy = 1287.9155 kcal/mol (1282.5660 without restraints) Performing minimization step: 4433. Total energy = 1287.8720 kcal/mol (1282.5222 without restraints) Performing minimization step: 4434. Total energy = 1287.8288 kcal/mol (1282.4786 without restraints) Performing minimization step: 4435. Total energy = 1287.7852 kcal/mol (1282.4346 without restraints) Performing minimization step: 4436. Total energy = 1287.7417 kcal/mol (1282.3906 without restraints) Performing minimization step: 4437. Total energy = 1287.6980 kcal/mol (1282.3467 without restraints) Performing minimization step: 4438. Total energy = 1287.6547 kcal/mol (1282.3031 without restraints) Performing minimization step: 4439. Total energy = 1287.6117 kcal/mol (1282.2596 without restraints) Performing minimization step: 4440. Total energy = 1287.5683 kcal/mol (1282.2159 without restraints) Performing minimization step: 4441. Total energy = 1287.5254 kcal/mol (1282.1729 without restraints) Performing minimization step: 4442. Total energy = 1287.4823 kcal/mol (1282.1292 without restraints) Performing minimization step: 4443. Total energy = 1287.4390 kcal/mol (1282.0855 without restraints) Performing minimization step: 4444. Total energy = 1287.3957 kcal/mol (1282.0419 without restraints) Performing minimization step: 4445. Total energy = 1287.3524 kcal/mol (1281.9982 without restraints) Performing minimization step: 4446. Total energy = 1287.3091 kcal/mol (1281.9546 without restraints) Performing minimization step: 4447. Total energy = 1287.2659 kcal/mol (1281.9110 without restraints) Performing minimization step: 4448. Total energy = 1287.2226 kcal/mol (1281.8674 without restraints) Performing minimization step: 4449. Total energy = 1287.1795 kcal/mol (1281.8239 without restraints) Performing minimization step: 4450. Total energy = 1287.1363 kcal/mol (1281.7804 without restraints) Performing minimization step: 4451. Total energy = 1287.0931 kcal/mol (1281.7369 without restraints) Performing minimization step: 4452. Total energy = 1287.0497 kcal/mol (1281.6931 without restraints) Performing minimization step: 4453. Total energy = 1287.0063 kcal/mol (1281.6493 without restraints) Performing minimization step: 4454. Total energy = 1286.9629 kcal/mol (1281.6056 without restraints) Performing minimization step: 4455. Total energy = 1286.9196 kcal/mol (1281.5618 without restraints) Performing minimization step: 4456. Total energy = 1286.8764 kcal/mol (1281.5183 without restraints) Performing minimization step: 4457. Total energy = 1286.8332 kcal/mol (1281.4748 without restraints) Performing minimization step: 4458. Total energy = 1286.7901 kcal/mol (1281.4314 without restraints) Performing minimization step: 4459. Total energy = 1286.7470 kcal/mol (1281.3879 without restraints) Performing minimization step: 4460. Total energy = 1286.7041 kcal/mol (1281.3447 without restraints) Performing minimization step: 4461. Total energy = 1286.6614 kcal/mol (1281.3017 without restraints) Performing minimization step: 4462. Total energy = 1286.6185 kcal/mol (1281.2583 without restraints) Performing minimization step: 4463. Total energy = 1286.5754 kcal/mol (1281.2149 without restraints) Performing minimization step: 4464. Total energy = 1286.5324 kcal/mol (1281.1715 without restraints) Performing minimization step: 4465. Total energy = 1286.4897 kcal/mol (1281.1286 without restraints) Performing minimization step: 4466. Total energy = 1286.4466 kcal/mol (1281.0851 without restraints) Performing minimization step: 4467. Total energy = 1286.4036 kcal/mol (1281.0417 without restraints) Performing minimization step: 4468. Total energy = 1286.3605 kcal/mol (1280.9982 without restraints) Performing minimization step: 4469. Total energy = 1286.3175 kcal/mol (1280.9549 without restraints) Performing minimization step: 4470. Total energy = 1286.2743 kcal/mol (1280.9114 without restraints) Performing minimization step: 4471. Total energy = 1286.2314 kcal/mol (1280.8681 without restraints) Performing minimization step: 4472. Total energy = 1286.1883 kcal/mol (1280.8246 without restraints) Performing minimization step: 4473. Total energy = 1286.1457 kcal/mol (1280.7817 without restraints) Performing minimization step: 4474. Total energy = 1286.1028 kcal/mol (1280.7385 without restraints) Performing minimization step: 4475. Total energy = 1286.0600 kcal/mol (1280.6953 without restraints) Performing minimization step: 4476. Total energy = 1286.0167 kcal/mol (1280.6516 without restraints) Performing minimization step: 4477. Total energy = 1285.9736 kcal/mol (1280.6081 without restraints) Performing minimization step: 4478. Total energy = 1285.9307 kcal/mol (1280.5649 without restraints) Performing minimization step: 4479. Total energy = 1285.8878 kcal/mol (1280.5217 without restraints) Performing minimization step: 4480. Total energy = 1285.8450 kcal/mol (1280.4785 without restraints) Performing minimization step: 4481. Total energy = 1285.8024 kcal/mol (1280.4356 without restraints) Performing minimization step: 4482. Total energy = 1285.7599 kcal/mol (1280.3927 without restraints) Performing minimization step: 4483. Total energy = 1285.7171 kcal/mol (1280.3496 without restraints) Performing minimization step: 4484. Total energy = 1285.6744 kcal/mol (1280.3067 without restraints) Performing minimization step: 4485. Total energy = 1285.6317 kcal/mol (1280.2635 without restraints) Performing minimization step: 4486. Total energy = 1285.5890 kcal/mol (1280.2203 without restraints) Performing minimization step: 4487. Total energy = 1285.5461 kcal/mol (1280.1772 without restraints) Performing minimization step: 4488. Total energy = 1285.5032 kcal/mol (1280.1339 without restraints) Performing minimization step: 4489. Total energy = 1285.4604 kcal/mol (1280.0909 without restraints) Performing minimization step: 4490. Total energy = 1285.4176 kcal/mol (1280.0476 without restraints) Performing minimization step: 4491. Total energy = 1285.3748 kcal/mol (1280.0046 without restraints) Performing minimization step: 4492. Total energy = 1285.3321 kcal/mol (1279.9615 without restraints) Performing minimization step: 4493. Total energy = 1285.2892 kcal/mol (1279.9183 without restraints) Performing minimization step: 4494. Total energy = 1285.2466 kcal/mol (1279.8753 without restraints) Performing minimization step: 4495. Total energy = 1285.2040 kcal/mol (1279.8323 without restraints) Performing minimization step: 4496. Total energy = 1285.1622 kcal/mol (1279.7902 without restraints) Performing minimization step: 4497. Total energy = 1285.1196 kcal/mol (1279.7473 without restraints) Performing minimization step: 4498. Total energy = 1285.0770 kcal/mol (1279.7043 without restraints) Performing minimization step: 4499. Total energy = 1285.0348 kcal/mol (1279.6618 without restraints) Performing minimization step: 4500. Total energy = 1284.9921 kcal/mol (1279.6187 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 1284.9492 kcal/mol (1279.5754 without restraints) Performing minimization step: 4502. Total energy = 1284.9065 kcal/mol (1279.5325 without restraints) Performing minimization step: 4503. Total energy = 1284.8640 kcal/mol (1279.4896 without restraints) Performing minimization step: 4504. Total energy = 1284.8215 kcal/mol (1279.4468 without restraints) Performing minimization step: 4505. Total energy = 1284.7795 kcal/mol (1279.4044 without restraints) Performing minimization step: 4506. Total energy = 1284.7370 kcal/mol (1279.3615 without restraints) Performing minimization step: 4507. Total energy = 1284.6945 kcal/mol (1279.3187 without restraints) Performing minimization step: 4508. Total energy = 1284.6522 kcal/mol (1279.2759 without restraints) Performing minimization step: 4509. Total energy = 1284.6096 kcal/mol (1279.2331 without restraints) Performing minimization step: 4510. Total energy = 1284.5671 kcal/mol (1279.1903 without restraints) Performing minimization step: 4511. Total energy = 1284.5247 kcal/mol (1279.1475 without restraints) Performing minimization step: 4512. Total energy = 1284.4823 kcal/mol (1279.1048 without restraints) Performing minimization step: 4513. Total energy = 1284.4399 kcal/mol (1279.0620 without restraints) Performing minimization step: 4514. Total energy = 1284.3973 kcal/mol (1279.0190 without restraints) Performing minimization step: 4515. Total energy = 1284.3549 kcal/mol (1278.9764 without restraints) Performing minimization step: 4516. Total energy = 1284.3125 kcal/mol (1278.9337 without restraints) Performing minimization step: 4517. Total energy = 1284.2702 kcal/mol (1278.8910 without restraints) Performing minimization step: 4518. Total energy = 1284.2281 kcal/mol (1278.8486 without restraints) Performing minimization step: 4519. Total energy = 1284.1858 kcal/mol (1278.8059 without restraints) Performing minimization step: 4520. Total energy = 1284.1435 kcal/mol (1278.7633 without restraints) Performing minimization step: 4521. Total energy = 1284.1012 kcal/mol (1278.7206 without restraints) Performing minimization step: 4522. Total energy = 1284.0589 kcal/mol (1278.6780 without restraints) Performing minimization step: 4523. Total energy = 1284.0166 kcal/mol (1278.6352 without restraints) Performing minimization step: 4524. Total energy = 1283.9740 kcal/mol (1278.5924 without restraints) Performing minimization step: 4525. Total energy = 1283.9318 kcal/mol (1278.5499 without restraints) Performing minimization step: 4526. Total energy = 1283.8894 kcal/mol (1278.5071 without restraints) Performing minimization step: 4527. Total energy = 1283.8471 kcal/mol (1278.4645 without restraints) Performing minimization step: 4528. Total energy = 1283.8046 kcal/mol (1278.4217 without restraints) Performing minimization step: 4529. Total energy = 1283.7622 kcal/mol (1278.3789 without restraints) Performing minimization step: 4530. Total energy = 1283.7200 kcal/mol (1278.3364 without restraints) Performing minimization step: 4531. Total energy = 1283.6778 kcal/mol (1278.2939 without restraints) Performing minimization step: 4532. Total energy = 1283.6356 kcal/mol (1278.2513 without restraints) Performing minimization step: 4533. Total energy = 1283.5934 kcal/mol (1278.2088 without restraints) Performing minimization step: 4534. Total energy = 1283.5512 kcal/mol (1278.1663 without restraints) Performing minimization step: 4535. Total energy = 1283.5093 kcal/mol (1278.1240 without restraints) Performing minimization step: 4536. Total energy = 1283.4671 kcal/mol (1278.0815 without restraints) Performing minimization step: 4537. Total energy = 1283.4250 kcal/mol (1278.0391 without restraints) Performing minimization step: 4538. Total energy = 1283.3829 kcal/mol (1277.9966 without restraints) Performing minimization step: 4539. Total energy = 1283.3408 kcal/mol (1277.9541 without restraints) Performing minimization step: 4540. Total energy = 1283.2988 kcal/mol (1277.9118 without restraints) Performing minimization step: 4541. Total energy = 1283.2569 kcal/mol (1277.8696 without restraints) Performing minimization step: 4542. Total energy = 1283.2147 kcal/mol (1277.8270 without restraints) Performing minimization step: 4543. Total energy = 1283.1726 kcal/mol (1277.7846 without restraints) Performing minimization step: 4544. Total energy = 1283.1306 kcal/mol (1277.7423 without restraints) Performing minimization step: 4545. Total energy = 1283.0886 kcal/mol (1277.6999 without restraints) Performing minimization step: 4546. Total energy = 1283.0468 kcal/mol (1277.6578 without restraints) Performing minimization step: 4547. Total energy = 1283.0048 kcal/mol (1277.6155 without restraints) Performing minimization step: 4548. Total energy = 1282.9628 kcal/mol (1277.5731 without restraints) Performing minimization step: 4549. Total energy = 1282.9208 kcal/mol (1277.5308 without restraints) Performing minimization step: 4550. Total energy = 1282.8789 kcal/mol (1277.4885 without restraints) Performing minimization step: 4551. Total energy = 1282.8369 kcal/mol (1277.4463 without restraints) Performing minimization step: 4552. Total energy = 1282.7952 kcal/mol (1277.4042 without restraints) Performing minimization step: 4553. Total energy = 1282.7531 kcal/mol (1277.3618 without restraints) Performing minimization step: 4554. Total energy = 1282.7111 kcal/mol (1277.3193 without restraints) Performing minimization step: 4555. Total energy = 1282.6688 kcal/mol (1277.2768 without restraints) Performing minimization step: 4556. Total energy = 1282.6269 kcal/mol (1277.2346 without restraints) Performing minimization step: 4557. Total energy = 1282.5850 kcal/mol (1277.1923 without restraints) Performing minimization step: 4558. Total energy = 1282.5429 kcal/mol (1277.1499 without restraints) Performing minimization step: 4559. Total energy = 1282.5010 kcal/mol (1277.1077 without restraints) Performing minimization step: 4560. Total energy = 1282.4592 kcal/mol (1277.0655 without restraints) Performing minimization step: 4561. Total energy = 1282.4173 kcal/mol (1277.0233 without restraints) Performing minimization step: 4562. Total energy = 1282.3757 kcal/mol (1276.9813 without restraints) Performing minimization step: 4563. Total energy = 1282.3339 kcal/mol (1276.9392 without restraints) Performing minimization step: 4564. Total energy = 1282.2922 kcal/mol (1276.8971 without restraints) Performing minimization step: 4565. Total energy = 1282.2504 kcal/mol (1276.8550 without restraints) Performing minimization step: 4566. Total energy = 1282.2084 kcal/mol (1276.8127 without restraints) Performing minimization step: 4567. Total energy = 1282.1666 kcal/mol (1276.7706 without restraints) Performing minimization step: 4568. Total energy = 1282.1251 kcal/mol (1276.7287 without restraints) Performing minimization step: 4569. Total energy = 1282.0833 kcal/mol (1276.6866 without restraints) Performing minimization step: 4570. Total energy = 1282.0416 kcal/mol (1276.6446 without restraints) Performing minimization step: 4571. Total energy = 1281.9998 kcal/mol (1276.6025 without restraints) Performing minimization step: 4572. Total energy = 1281.9583 kcal/mol (1276.5606 without restraints) Performing minimization step: 4573. Total energy = 1281.9166 kcal/mol (1276.5187 without restraints) Performing minimization step: 4574. Total energy = 1281.8747 kcal/mol (1276.4764 without restraints) Performing minimization step: 4575. Total energy = 1281.8330 kcal/mol (1276.4344 without restraints) Performing minimization step: 4576. Total energy = 1281.7913 kcal/mol (1276.3923 without restraints) Performing minimization step: 4577. Total energy = 1281.7497 kcal/mol (1276.3504 without restraints) Performing minimization step: 4578. Total energy = 1281.7080 kcal/mol (1276.3084 without restraints) Performing minimization step: 4579. Total energy = 1281.6664 kcal/mol (1276.2664 without restraints) Performing minimization step: 4580. Total energy = 1281.6248 kcal/mol (1276.2245 without restraints) Performing minimization step: 4581. Total energy = 1281.5832 kcal/mol (1276.1826 without restraints) Performing minimization step: 4582. Total energy = 1281.5416 kcal/mol (1276.1407 without restraints) Performing minimization step: 4583. Total energy = 1281.4999 kcal/mol (1276.0985 without restraints) Performing minimization step: 4584. Total energy = 1281.4582 kcal/mol (1276.0566 without restraints) Performing minimization step: 4585. Total energy = 1281.4164 kcal/mol (1276.0144 without restraints) Performing minimization step: 4586. Total energy = 1281.3748 kcal/mol (1275.9725 without restraints) Performing minimization step: 4587. Total energy = 1281.3332 kcal/mol (1275.9306 without restraints) Performing minimization step: 4588. Total energy = 1281.2915 kcal/mol (1275.8886 without restraints) Performing minimization step: 4589. Total energy = 1281.2503 kcal/mol (1275.8471 without restraints) Performing minimization step: 4590. Total energy = 1281.2090 kcal/mol (1275.8054 without restraints) Performing minimization step: 4591. Total energy = 1281.1675 kcal/mol (1275.7636 without restraints) Performing minimization step: 4592. Total energy = 1281.1260 kcal/mol (1275.7218 without restraints) Performing minimization step: 4593. Total energy = 1281.0851 kcal/mol (1275.6806 without restraints) Performing minimization step: 4594. Total energy = 1281.0436 kcal/mol (1275.6388 without restraints) Performing minimization step: 4595. Total energy = 1281.0022 kcal/mol (1275.5969 without restraints) Performing minimization step: 4596. Total energy = 1280.9607 kcal/mol (1275.5551 without restraints) Performing minimization step: 4597. Total energy = 1280.9192 kcal/mol (1275.5134 without restraints) Performing minimization step: 4598. Total energy = 1280.8782 kcal/mol (1275.4720 without restraints) Performing minimization step: 4599. Total energy = 1280.8369 kcal/mol (1275.4304 without restraints) Performing minimization step: 4600. Total energy = 1280.7955 kcal/mol (1275.3887 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 1280.7541 kcal/mol (1275.3469 without restraints) Performing minimization step: 4602. Total energy = 1280.7127 kcal/mol (1275.3053 without restraints) Performing minimization step: 4603. Total energy = 1280.6711 kcal/mol (1275.2633 without restraints) Performing minimization step: 4604. Total energy = 1280.6298 kcal/mol (1275.2216 without restraints) Performing minimization step: 4605. Total energy = 1280.5884 kcal/mol (1275.1799 without restraints) Performing minimization step: 4606. Total energy = 1280.5471 kcal/mol (1275.1383 without restraints) Performing minimization step: 4607. Total energy = 1280.5058 kcal/mol (1275.0967 without restraints) Performing minimization step: 4608. Total energy = 1280.4645 kcal/mol (1275.0551 without restraints) Performing minimization step: 4609. Total energy = 1280.4231 kcal/mol (1275.0134 without restraints) Performing minimization step: 4610. Total energy = 1280.3818 kcal/mol (1274.9717 without restraints) Performing minimization step: 4611. Total energy = 1280.3405 kcal/mol (1274.9301 without restraints) Performing minimization step: 4612. Total energy = 1280.2995 kcal/mol (1274.8888 without restraints) Performing minimization step: 4613. Total energy = 1280.2586 kcal/mol (1274.8475 without restraints) Performing minimization step: 4614. Total energy = 1280.2173 kcal/mol (1274.8059 without restraints) Performing minimization step: 4615. Total energy = 1280.1760 kcal/mol (1274.7643 without restraints) Performing minimization step: 4616. Total energy = 1280.1348 kcal/mol (1274.7227 without restraints) Performing minimization step: 4617. Total energy = 1280.0938 kcal/mol (1274.6814 without restraints) Performing minimization step: 4618. Total energy = 1280.0524 kcal/mol (1274.6397 without restraints) Performing minimization step: 4619. Total energy = 1280.0112 kcal/mol (1274.5982 without restraints) Performing minimization step: 4620. Total energy = 1279.9697 kcal/mol (1274.5564 without restraints) Performing minimization step: 4621. Total energy = 1279.9290 kcal/mol (1274.5154 without restraints) Performing minimization step: 4622. Total energy = 1279.8876 kcal/mol (1274.4737 without restraints) Performing minimization step: 4623. Total energy = 1279.8462 kcal/mol (1274.4319 without restraints) Performing minimization step: 4624. Total energy = 1279.8048 kcal/mol (1274.3902 without restraints) Performing minimization step: 4625. Total energy = 1279.7636 kcal/mol (1274.3487 without restraints) Performing minimization step: 4626. Total energy = 1279.7226 kcal/mol (1274.3074 without restraints) Performing minimization step: 4627. Total energy = 1279.6810 kcal/mol (1274.2655 without restraints) Performing minimization step: 4628. Total energy = 1279.6399 kcal/mol (1274.2240 without restraints) Performing minimization step: 4629. Total energy = 1279.5987 kcal/mol (1274.1825 without restraints) Performing minimization step: 4630. Total energy = 1279.5577 kcal/mol (1274.1412 without restraints) Performing minimization step: 4631. Total energy = 1279.5163 kcal/mol (1274.0995 without restraints) Performing minimization step: 4632. Total energy = 1279.4750 kcal/mol (1274.0579 without restraints) Performing minimization step: 4633. Total energy = 1279.4343 kcal/mol (1274.0169 without restraints) Performing minimization step: 4634. Total energy = 1279.3937 kcal/mol (1273.9759 without restraints) Performing minimization step: 4635. Total energy = 1279.3529 kcal/mol (1273.9348 without restraints) Performing minimization step: 4636. Total energy = 1279.3118 kcal/mol (1273.8934 without restraints) Performing minimization step: 4637. Total energy = 1279.2709 kcal/mol (1273.8522 without restraints) Performing minimization step: 4638. Total energy = 1279.2299 kcal/mol (1273.8108 without restraints) Performing minimization step: 4639. Total energy = 1279.1888 kcal/mol (1273.7695 without restraints) Performing minimization step: 4640. Total energy = 1279.1475 kcal/mol (1273.7279 without restraints) Performing minimization step: 4641. Total energy = 1279.1069 kcal/mol (1273.6869 without restraints) Performing minimization step: 4642. Total energy = 1279.0659 kcal/mol (1273.6456 without restraints) Performing minimization step: 4643. Total energy = 1279.0251 kcal/mol (1273.6045 without restraints) Performing minimization step: 4644. Total energy = 1278.9843 kcal/mol (1273.5634 without restraints) Performing minimization step: 4645. Total energy = 1278.9433 kcal/mol (1273.5219 without restraints) Performing minimization step: 4646. Total energy = 1278.9022 kcal/mol (1273.4806 without restraints) Performing minimization step: 4647. Total energy = 1278.8612 kcal/mol (1273.4392 without restraints) Performing minimization step: 4648. Total energy = 1278.8202 kcal/mol (1273.3981 without restraints) Performing minimization step: 4649. Total energy = 1278.7793 kcal/mol (1273.3568 without restraints) Performing minimization step: 4650. Total energy = 1278.7386 kcal/mol (1273.3157 without restraints) Performing minimization step: 4651. Total energy = 1278.6975 kcal/mol (1273.2742 without restraints) Performing minimization step: 4652. Total energy = 1278.6563 kcal/mol (1273.2327 without restraints) Performing minimization step: 4653. Total energy = 1278.6153 kcal/mol (1273.1915 without restraints) Performing minimization step: 4654. Total energy = 1278.5740 kcal/mol (1273.1499 without restraints) Performing minimization step: 4655. Total energy = 1278.5331 kcal/mol (1273.1087 without restraints) Performing minimization step: 4656. Total energy = 1278.4922 kcal/mol (1273.0675 without restraints) Performing minimization step: 4657. Total energy = 1278.4511 kcal/mol (1273.0261 without restraints) Performing minimization step: 4658. Total energy = 1278.4103 kcal/mol (1272.9849 without restraints) Performing minimization step: 4659. Total energy = 1278.3695 kcal/mol (1272.9439 without restraints) Performing minimization step: 4660. Total energy = 1278.3287 kcal/mol (1272.9027 without restraints) Performing minimization step: 4661. Total energy = 1278.2879 kcal/mol (1272.8616 without restraints) Performing minimization step: 4662. Total energy = 1278.2468 kcal/mol (1272.8202 without restraints) Performing minimization step: 4663. Total energy = 1278.2063 kcal/mol (1272.7793 without restraints) Performing minimization step: 4664. Total energy = 1278.1655 kcal/mol (1272.7382 without restraints) Performing minimization step: 4665. Total energy = 1278.1247 kcal/mol (1272.6971 without restraints) Performing minimization step: 4666. Total energy = 1278.0839 kcal/mol (1272.6560 without restraints) Performing minimization step: 4667. Total energy = 1278.0431 kcal/mol (1272.6149 without restraints) Performing minimization step: 4668. Total energy = 1278.0026 kcal/mol (1272.5741 without restraints) Performing minimization step: 4669. Total energy = 1277.9621 kcal/mol (1272.5332 without restraints) Performing minimization step: 4670. Total energy = 1277.9211 kcal/mol (1272.4920 without restraints) Performing minimization step: 4671. Total energy = 1277.8804 kcal/mol (1272.4510 without restraints) Performing minimization step: 4672. Total energy = 1277.8396 kcal/mol (1272.4099 without restraints) Performing minimization step: 4673. Total energy = 1277.7989 kcal/mol (1272.3689 without restraints) Performing minimization step: 4674. Total energy = 1277.7585 kcal/mol (1272.3282 without restraints) Performing minimization step: 4675. Total energy = 1277.7178 kcal/mol (1272.2871 without restraints) Performing minimization step: 4676. Total energy = 1277.6773 kcal/mol (1272.2463 without restraints) Performing minimization step: 4677. Total energy = 1277.6368 kcal/mol (1272.2055 without restraints) Performing minimization step: 4678. Total energy = 1277.5961 kcal/mol (1272.1645 without restraints) Performing minimization step: 4679. Total energy = 1277.5554 kcal/mol (1272.1235 without restraints) Performing minimization step: 4680. Total energy = 1277.5147 kcal/mol (1272.0824 without restraints) Performing minimization step: 4681. Total energy = 1277.4740 kcal/mol (1272.0415 without restraints) Performing minimization step: 4682. Total energy = 1277.4334 kcal/mol (1272.0005 without restraints) Performing minimization step: 4683. Total energy = 1277.3927 kcal/mol (1271.9596 without restraints) Performing minimization step: 4684. Total energy = 1277.3523 kcal/mol (1271.9188 without restraints) Performing minimization step: 4685. Total energy = 1277.3115 kcal/mol (1271.8776 without restraints) Performing minimization step: 4686. Total energy = 1277.2703 kcal/mol (1271.8361 without restraints) Performing minimization step: 4687. Total energy = 1277.2296 kcal/mol (1271.7952 without restraints) Performing minimization step: 4688. Total energy = 1277.1890 kcal/mol (1271.7543 without restraints) Performing minimization step: 4689. Total energy = 1277.1482 kcal/mol (1271.7132 without restraints) Performing minimization step: 4690. Total energy = 1277.1075 kcal/mol (1271.6721 without restraints) Performing minimization step: 4691. Total energy = 1277.0668 kcal/mol (1271.6312 without restraints) Performing minimization step: 4692. Total energy = 1277.0262 kcal/mol (1271.5903 without restraints) Performing minimization step: 4693. Total energy = 1276.9862 kcal/mol (1271.5500 without restraints) Performing minimization step: 4694. Total energy = 1276.9456 kcal/mol (1271.5091 without restraints) Performing minimization step: 4695. Total energy = 1276.9050 kcal/mol (1271.4682 without restraints) Performing minimization step: 4696. Total energy = 1276.8643 kcal/mol (1271.4271 without restraints) Performing minimization step: 4697. Total energy = 1276.8238 kcal/mol (1271.3863 without restraints) Performing minimization step: 4698. Total energy = 1276.7832 kcal/mol (1271.3454 without restraints) Performing minimization step: 4699. Total energy = 1276.7424 kcal/mol (1271.3044 without restraints) Performing minimization step: 4700. Total energy = 1276.7018 kcal/mol (1271.2634 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 1276.6613 kcal/mol (1271.2225 without restraints) Performing minimization step: 4702. Total energy = 1276.6207 kcal/mol (1271.1817 without restraints) Performing minimization step: 4703. Total energy = 1276.5802 kcal/mol (1271.1409 without restraints) Performing minimization step: 4704. Total energy = 1276.5397 kcal/mol (1271.1001 without restraints) Performing minimization step: 4705. Total energy = 1276.4992 kcal/mol (1271.0593 without restraints) Performing minimization step: 4706. Total energy = 1276.4587 kcal/mol (1271.0185 without restraints) Performing minimization step: 4707. Total energy = 1276.4183 kcal/mol (1270.9779 without restraints) Performing minimization step: 4708. Total energy = 1276.3780 kcal/mol (1270.9372 without restraints) Performing minimization step: 4709. Total energy = 1276.3378 kcal/mol (1270.8967 without restraints) Performing minimization step: 4710. Total energy = 1276.2971 kcal/mol (1270.8557 without restraints) Performing minimization step: 4711. Total energy = 1276.2565 kcal/mol (1270.8146 without restraints) Performing minimization step: 4712. Total energy = 1276.2159 kcal/mol (1270.7739 without restraints) Performing minimization step: 4713. Total energy = 1276.1755 kcal/mol (1270.7331 without restraints) Performing minimization step: 4714. Total energy = 1276.1352 kcal/mol (1270.6926 without restraints) Performing minimization step: 4715. Total energy = 1276.0948 kcal/mol (1270.6519 without restraints) Performing minimization step: 4716. Total energy = 1276.0546 kcal/mol (1270.6114 without restraints) Performing minimization step: 4717. Total energy = 1276.0143 kcal/mol (1270.5708 without restraints) Performing minimization step: 4718. Total energy = 1275.9742 kcal/mol (1270.5303 without restraints) Performing minimization step: 4719. Total energy = 1275.9338 kcal/mol (1270.4897 without restraints) Performing minimization step: 4720. Total energy = 1275.8935 kcal/mol (1270.4490 without restraints) Performing minimization step: 4721. Total energy = 1275.8534 kcal/mol (1270.4086 without restraints) Performing minimization step: 4722. Total energy = 1275.8132 kcal/mol (1270.3681 without restraints) Performing minimization step: 4723. Total energy = 1275.7729 kcal/mol (1270.3275 without restraints) Performing minimization step: 4724. Total energy = 1275.7325 kcal/mol (1270.2868 without restraints) Performing minimization step: 4725. Total energy = 1275.6921 kcal/mol (1270.2462 without restraints) Performing minimization step: 4726. Total energy = 1275.6519 kcal/mol (1270.2056 without restraints) Performing minimization step: 4727. Total energy = 1275.6117 kcal/mol (1270.1652 without restraints) Performing minimization step: 4728. Total energy = 1275.5712 kcal/mol (1270.1244 without restraints) Performing minimization step: 4729. Total energy = 1275.5308 kcal/mol (1270.0836 without restraints) Performing minimization step: 4730. Total energy = 1275.4904 kcal/mol (1270.0430 without restraints) Performing minimization step: 4731. Total energy = 1275.4503 kcal/mol (1270.0026 without restraints) Performing minimization step: 4732. Total energy = 1275.4100 kcal/mol (1269.9620 without restraints) Performing minimization step: 4733. Total energy = 1275.3698 kcal/mol (1269.9214 without restraints) Performing minimization step: 4734. Total energy = 1275.3296 kcal/mol (1269.8809 without restraints) Performing minimization step: 4735. Total energy = 1275.2893 kcal/mol (1269.8404 without restraints) Performing minimization step: 4736. Total energy = 1275.2491 kcal/mol (1269.7998 without restraints) Performing minimization step: 4737. Total energy = 1275.2088 kcal/mol (1269.7593 without restraints) Performing minimization step: 4738. Total energy = 1275.1688 kcal/mol (1269.7190 without restraints) Performing minimization step: 4739. Total energy = 1275.1286 kcal/mol (1269.6784 without restraints) Performing minimization step: 4740. Total energy = 1275.0883 kcal/mol (1269.6379 without restraints) Performing minimization step: 4741. Total energy = 1275.0481 kcal/mol (1269.5974 without restraints) Performing minimization step: 4742. Total energy = 1275.0079 kcal/mol (1269.5568 without restraints) Performing minimization step: 4743. Total energy = 1274.9676 kcal/mol (1269.5163 without restraints) Performing minimization step: 4744. Total energy = 1274.9274 kcal/mol (1269.4758 without restraints) Performing minimization step: 4745. Total energy = 1274.8871 kcal/mol (1269.4352 without restraints) Performing minimization step: 4746. Total energy = 1274.8467 kcal/mol (1269.3945 without restraints) Performing minimization step: 4747. Total energy = 1274.8065 kcal/mol (1269.3540 without restraints) Performing minimization step: 4748. Total energy = 1274.7664 kcal/mol (1269.3136 without restraints) Performing minimization step: 4749. Total energy = 1274.7262 kcal/mol (1269.2731 without restraints) Performing minimization step: 4750. Total energy = 1274.6860 kcal/mol (1269.2326 without restraints) Performing minimization step: 4751. Total energy = 1274.6459 kcal/mol (1269.1922 without restraints) Performing minimization step: 4752. Total energy = 1274.6060 kcal/mol (1269.1520 without restraints) Performing minimization step: 4753. Total energy = 1274.5660 kcal/mol (1269.1118 without restraints) Performing minimization step: 4754. Total energy = 1274.5260 kcal/mol (1269.0714 without restraints) Performing minimization step: 4755. Total energy = 1274.4859 kcal/mol (1269.0310 without restraints) Performing minimization step: 4756. Total energy = 1274.4458 kcal/mol (1268.9906 without restraints) Performing minimization step: 4757. Total energy = 1274.4056 kcal/mol (1268.9502 without restraints) Performing minimization step: 4758. Total energy = 1274.3654 kcal/mol (1268.9096 without restraints) Performing minimization step: 4759. Total energy = 1274.3253 kcal/mol (1268.8692 without restraints) Performing minimization step: 4760. Total energy = 1274.2849 kcal/mol (1268.8286 without restraints) Performing minimization step: 4761. Total energy = 1274.2448 kcal/mol (1268.7882 without restraints) Performing minimization step: 4762. Total energy = 1274.2048 kcal/mol (1268.7478 without restraints) Performing minimization step: 4763. Total energy = 1274.1648 kcal/mol (1268.7076 without restraints) Performing minimization step: 4764. Total energy = 1274.1248 kcal/mol (1268.6673 without restraints) Performing minimization step: 4765. Total energy = 1274.0848 kcal/mol (1268.6269 without restraints) Performing minimization step: 4766. Total energy = 1274.0449 kcal/mol (1268.5868 without restraints) Performing minimization step: 4767. Total energy = 1274.0048 kcal/mol (1268.5465 without restraints) Performing minimization step: 4768. Total energy = 1273.9649 kcal/mol (1268.5063 without restraints) Performing minimization step: 4769. Total energy = 1273.9252 kcal/mol (1268.4662 without restraints) Performing minimization step: 4770. Total energy = 1273.8851 kcal/mol (1268.4259 without restraints) Performing minimization step: 4771. Total energy = 1273.8453 kcal/mol (1268.3857 without restraints) Performing minimization step: 4772. Total energy = 1273.8053 kcal/mol (1268.3454 without restraints) Performing minimization step: 4773. Total energy = 1273.7653 kcal/mol (1268.3052 without restraints) Performing minimization step: 4774. Total energy = 1273.7253 kcal/mol (1268.2648 without restraints) Performing minimization step: 4775. Total energy = 1273.6853 kcal/mol (1268.2245 without restraints) Performing minimization step: 4776. Total energy = 1273.6457 kcal/mol (1268.1846 without restraints) Performing minimization step: 4777. Total energy = 1273.6056 kcal/mol (1268.1443 without restraints) Performing minimization step: 4778. Total energy = 1273.5661 kcal/mol (1268.1045 without restraints) Performing minimization step: 4779. Total energy = 1273.5262 kcal/mol (1268.0643 without restraints) Performing minimization step: 4780. Total energy = 1273.4862 kcal/mol (1268.0240 without restraints) Performing minimization step: 4781. Total energy = 1273.4463 kcal/mol (1267.9838 without restraints) Performing minimization step: 4782. Total energy = 1273.4063 kcal/mol (1267.9435 without restraints) Performing minimization step: 4783. Total energy = 1273.3667 kcal/mol (1267.9037 without restraints) Performing minimization step: 4784. Total energy = 1273.3267 kcal/mol (1267.8633 without restraints) Performing minimization step: 4785. Total energy = 1273.2867 kcal/mol (1267.8230 without restraints) Performing minimization step: 4786. Total energy = 1273.2468 kcal/mol (1267.7829 without restraints) Performing minimization step: 4787. Total energy = 1273.2067 kcal/mol (1267.7426 without restraints) Performing minimization step: 4788. Total energy = 1273.1671 kcal/mol (1267.7026 without restraints) Performing minimization step: 4789. Total energy = 1273.1272 kcal/mol (1267.6624 without restraints) Performing minimization step: 4790. Total energy = 1273.0876 kcal/mol (1267.6225 without restraints) Performing minimization step: 4791. Total energy = 1273.0477 kcal/mol (1267.5823 without restraints) Performing minimization step: 4792. Total energy = 1273.0078 kcal/mol (1267.5421 without restraints) Performing minimization step: 4793. Total energy = 1272.9681 kcal/mol (1267.5022 without restraints) Performing minimization step: 4794. Total energy = 1272.9283 kcal/mol (1267.4620 without restraints) Performing minimization step: 4795. Total energy = 1272.8884 kcal/mol (1267.4219 without restraints) Performing minimization step: 4796. Total energy = 1272.8487 kcal/mol (1267.3819 without restraints) Performing minimization step: 4797. Total energy = 1272.8091 kcal/mol (1267.3420 without restraints) Performing minimization step: 4798. Total energy = 1272.7692 kcal/mol (1267.3019 without restraints) Performing minimization step: 4799. Total energy = 1272.7294 kcal/mol (1267.2617 without restraints) Performing minimization step: 4800. Total energy = 1272.6897 kcal/mol (1267.2218 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 1272.6497 kcal/mol (1267.1814 without restraints) Performing minimization step: 4802. Total energy = 1272.6099 kcal/mol (1267.1413 without restraints) Performing minimization step: 4803. Total energy = 1272.5700 kcal/mol (1267.1012 without restraints) Performing minimization step: 4804. Total energy = 1272.5302 kcal/mol (1267.0611 without restraints) Performing minimization step: 4805. Total energy = 1272.4905 kcal/mol (1267.0211 without restraints) Performing minimization step: 4806. Total energy = 1272.4507 kcal/mol (1266.9810 without restraints) Performing minimization step: 4807. Total energy = 1272.4109 kcal/mol (1266.9409 without restraints) Performing minimization step: 4808. Total energy = 1272.3711 kcal/mol (1266.9009 without restraints) Performing minimization step: 4809. Total energy = 1272.3313 kcal/mol (1266.8608 without restraints) Performing minimization step: 4810. Total energy = 1272.2913 kcal/mol (1266.8205 without restraints) Performing minimization step: 4811. Total energy = 1272.2517 kcal/mol (1266.7807 without restraints) Performing minimization step: 4812. Total energy = 1272.2120 kcal/mol (1266.7406 without restraints) Performing minimization step: 4813. Total energy = 1272.1722 kcal/mol (1266.7004 without restraints) Performing minimization step: 4814. Total energy = 1272.1327 kcal/mol (1266.6608 without restraints) Performing minimization step: 4815. Total energy = 1272.0929 kcal/mol (1266.6207 without restraints) Performing minimization step: 4816. Total energy = 1272.0532 kcal/mol (1266.5807 without restraints) Performing minimization step: 4817. Total energy = 1272.0131 kcal/mol (1266.5405 without restraints) Performing minimization step: 4818. Total energy = 1271.9735 kcal/mol (1266.5005 without restraints) Performing minimization step: 4819. Total energy = 1271.9338 kcal/mol (1266.4605 without restraints) Performing minimization step: 4820. Total energy = 1271.8941 kcal/mol (1266.4205 without restraints) Performing minimization step: 4821. Total energy = 1271.8544 kcal/mol (1266.3805 without restraints) Performing minimization step: 4822. Total energy = 1271.8148 kcal/mol (1266.3407 without restraints) Performing minimization step: 4823. Total energy = 1271.7753 kcal/mol (1266.3009 without restraints) Performing minimization step: 4824. Total energy = 1271.7358 kcal/mol (1266.2611 without restraints) Performing minimization step: 4825. Total energy = 1271.6960 kcal/mol (1266.2209 without restraints) Performing minimization step: 4826. Total energy = 1271.6562 kcal/mol (1266.1809 without restraints) Performing minimization step: 4827. Total energy = 1271.6161 kcal/mol (1266.1405 without restraints) Performing minimization step: 4828. Total energy = 1271.5762 kcal/mol (1266.1004 without restraints) Performing minimization step: 4829. Total energy = 1271.5366 kcal/mol (1266.0604 without restraints) Performing minimization step: 4830. Total energy = 1271.4969 kcal/mol (1266.0205 without restraints) Performing minimization step: 4831. Total energy = 1271.4570 kcal/mol (1265.9803 without restraints) Performing minimization step: 4832. Total energy = 1271.4174 kcal/mol (1265.9404 without restraints) Performing minimization step: 4833. Total energy = 1271.3779 kcal/mol (1265.9007 without restraints) Performing minimization step: 4834. Total energy = 1271.3383 kcal/mol (1265.8607 without restraints) Performing minimization step: 4835. Total energy = 1271.2986 kcal/mol (1265.8208 without restraints) Performing minimization step: 4836. Total energy = 1271.2590 kcal/mol (1265.7809 without restraints) Performing minimization step: 4837. Total energy = 1271.2199 kcal/mol (1265.7415 without restraints) Performing minimization step: 4838. Total energy = 1271.1801 kcal/mol (1265.7014 without restraints) Performing minimization step: 4839. Total energy = 1271.1405 kcal/mol (1265.6616 without restraints) Performing minimization step: 4840. Total energy = 1271.1009 kcal/mol (1265.6217 without restraints) Performing minimization step: 4841. Total energy = 1271.0613 kcal/mol (1265.5816 without restraints) Performing minimization step: 4842. Total energy = 1271.0216 kcal/mol (1265.5419 without restraints) Performing minimization step: 4843. Total energy = 1270.9823 kcal/mol (1265.5023 without restraints) Performing minimization step: 4844. Total energy = 1270.9428 kcal/mol (1265.4624 without restraints) Performing minimization step: 4845. Total energy = 1270.9032 kcal/mol (1265.4226 without restraints) Performing minimization step: 4846. Total energy = 1270.8636 kcal/mol (1265.3827 without restraints) Performing minimization step: 4847. Total energy = 1270.8241 kcal/mol (1265.3429 without restraints) Performing minimization step: 4848. Total energy = 1270.7842 kcal/mol (1265.3028 without restraints) Performing minimization step: 4849. Total energy = 1270.7447 kcal/mol (1265.2630 without restraints) Performing minimization step: 4850. Total energy = 1270.7053 kcal/mol (1265.2233 without restraints) Performing minimization step: 4851. Total energy = 1270.6656 kcal/mol (1265.1833 without restraints) Performing minimization step: 4852. Total energy = 1270.6258 kcal/mol (1265.1433 without restraints) Performing minimization step: 4853. Total energy = 1270.5862 kcal/mol (1265.1034 without restraints) Performing minimization step: 4854. Total energy = 1270.5467 kcal/mol (1265.0636 without restraints) Performing minimization step: 4855. Total energy = 1270.5070 kcal/mol (1265.0236 without restraints) Performing minimization step: 4856. Total energy = 1270.4672 kcal/mol (1264.9836 without restraints) Performing minimization step: 4857. Total energy = 1270.4276 kcal/mol (1264.9438 without restraints) Performing minimization step: 4858. Total energy = 1270.3882 kcal/mol (1264.9042 without restraints) Performing minimization step: 4859. Total energy = 1270.3487 kcal/mol (1264.8643 without restraints) Performing minimization step: 4860. Total energy = 1270.3095 kcal/mol (1264.8248 without restraints) Performing minimization step: 4861. Total energy = 1270.2698 kcal/mol (1264.7849 without restraints) Performing minimization step: 4862. Total energy = 1270.2303 kcal/mol (1264.7450 without restraints) Performing minimization step: 4863. Total energy = 1270.1908 kcal/mol (1264.7053 without restraints) Performing minimization step: 4864. Total energy = 1270.1511 kcal/mol (1264.6653 without restraints) Performing minimization step: 4865. Total energy = 1270.1113 kcal/mol (1264.6253 without restraints) Performing minimization step: 4866. Total energy = 1270.0719 kcal/mol (1264.5856 without restraints) Performing minimization step: 4867. Total energy = 1270.0326 kcal/mol (1264.5461 without restraints) Performing minimization step: 4868. Total energy = 1269.9935 kcal/mol (1264.5066 without restraints) Performing minimization step: 4869. Total energy = 1269.9542 kcal/mol (1264.4671 without restraints) Performing minimization step: 4870. Total energy = 1269.9151 kcal/mol (1264.4277 without restraints) Performing minimization step: 4871. Total energy = 1269.8756 kcal/mol (1264.3879 without restraints) Performing minimization step: 4872. Total energy = 1269.8362 kcal/mol (1264.3482 without restraints) Performing minimization step: 4873. Total energy = 1269.7966 kcal/mol (1264.3082 without restraints) Performing minimization step: 4874. Total energy = 1269.7570 kcal/mol (1264.2685 without restraints) Performing minimization step: 4875. Total energy = 1269.7178 kcal/mol (1264.2290 without restraints) Performing minimization step: 4876. Total energy = 1269.6784 kcal/mol (1264.1893 without restraints) Performing minimization step: 4877. Total energy = 1269.6390 kcal/mol (1264.1497 without restraints) Performing minimization step: 4878. Total energy = 1269.5996 kcal/mol (1264.1100 without restraints) Performing minimization step: 4879. Total energy = 1269.5602 kcal/mol (1264.0703 without restraints) Performing minimization step: 4880. Total energy = 1269.5207 kcal/mol (1264.0305 without restraints) Performing minimization step: 4881. Total energy = 1269.4812 kcal/mol (1263.9908 without restraints) Performing minimization step: 4882. Total energy = 1269.4421 kcal/mol (1263.9514 without restraints) Performing minimization step: 4883. Total energy = 1269.4027 kcal/mol (1263.9118 without restraints) Performing minimization step: 4884. Total energy = 1269.3634 kcal/mol (1263.8722 without restraints) Performing minimization step: 4885. Total energy = 1269.3240 kcal/mol (1263.8325 without restraints) Performing minimization step: 4886. Total energy = 1269.2846 kcal/mol (1263.7929 without restraints) Performing minimization step: 4887. Total energy = 1269.2452 kcal/mol (1263.7532 without restraints) Performing minimization step: 4888. Total energy = 1269.2058 kcal/mol (1263.7136 without restraints) Performing minimization step: 4889. Total energy = 1269.1665 kcal/mol (1263.6739 without restraints) Performing minimization step: 4890. Total energy = 1269.1271 kcal/mol (1263.6343 without restraints) Performing minimization step: 4891. Total energy = 1269.0877 kcal/mol (1263.5946 without restraints) Performing minimization step: 4892. Total energy = 1269.0483 kcal/mol (1263.5550 without restraints) Performing minimization step: 4893. Total energy = 1269.0090 kcal/mol (1263.5154 without restraints) Performing minimization step: 4894. Total energy = 1268.9696 kcal/mol (1263.4758 without restraints) Performing minimization step: 4895. Total energy = 1268.9303 kcal/mol (1263.4361 without restraints) Performing minimization step: 4896. Total energy = 1268.8909 kcal/mol (1263.3966 without restraints) Performing minimization step: 4897. Total energy = 1268.8516 kcal/mol (1263.3570 without restraints) Performing minimization step: 4898. Total energy = 1268.8123 kcal/mol (1263.3174 without restraints) Performing minimization step: 4899. Total energy = 1268.7728 kcal/mol (1263.2776 without restraints) Performing minimization step: 4900. Total energy = 1268.7334 kcal/mol (1263.2380 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 1268.6941 kcal/mol (1263.1984 without restraints) Performing minimization step: 4902. Total energy = 1268.6548 kcal/mol (1263.1588 without restraints) Performing minimization step: 4903. Total energy = 1268.6153 kcal/mol (1263.1189 without restraints) Performing minimization step: 4904. Total energy = 1268.5759 kcal/mol (1263.0794 without restraints) Performing minimization step: 4905. Total energy = 1268.5368 kcal/mol (1263.0400 without restraints) Performing minimization step: 4906. Total energy = 1268.4975 kcal/mol (1263.0004 without restraints) Performing minimization step: 4907. Total energy = 1268.4582 kcal/mol (1262.9608 without restraints) Performing minimization step: 4908. Total energy = 1268.4191 kcal/mol (1262.9215 without restraints) Performing minimization step: 4909. Total energy = 1268.3800 kcal/mol (1262.8821 without restraints) Performing minimization step: 4910. Total energy = 1268.3407 kcal/mol (1262.8427 without restraints) Performing minimization step: 4911. Total energy = 1268.3017 kcal/mol (1262.8033 without restraints) Performing minimization step: 4912. Total energy = 1268.2624 kcal/mol (1262.7638 without restraints) Performing minimization step: 4913. Total energy = 1268.2233 kcal/mol (1262.7242 without restraints) Performing minimization step: 4914. Total energy = 1268.1838 kcal/mol (1262.6847 without restraints) Performing minimization step: 4915. Total energy = 1268.1446 kcal/mol (1262.6452 without restraints) Performing minimization step: 4916. Total energy = 1268.1054 kcal/mol (1262.6057 without restraints) Performing minimization step: 4917. Total energy = 1268.0663 kcal/mol (1262.5664 without restraints) Performing minimization step: 4918. Total energy = 1268.0271 kcal/mol (1262.5269 without restraints) Performing minimization step: 4919. Total energy = 1267.9876 kcal/mol (1262.4872 without restraints) Performing minimization step: 4920. Total energy = 1267.9481 kcal/mol (1262.4474 without restraints) Performing minimization step: 4921. Total energy = 1267.9086 kcal/mol (1262.4076 without restraints) Performing minimization step: 4922. Total energy = 1267.8694 kcal/mol (1262.3683 without restraints) Performing minimization step: 4923. Total energy = 1267.8300 kcal/mol (1262.3285 without restraints) Performing minimization step: 4924. Total energy = 1267.7912 kcal/mol (1262.2895 without restraints) Performing minimization step: 4925. Total energy = 1267.7520 kcal/mol (1262.2500 without restraints) Performing minimization step: 4926. Total energy = 1267.7125 kcal/mol (1262.2103 without restraints) Performing minimization step: 4927. Total energy = 1267.6734 kcal/mol (1262.1708 without restraints) Performing minimization step: 4928. Total energy = 1267.6342 kcal/mol (1262.1314 without restraints) Performing minimization step: 4929. Total energy = 1267.5950 kcal/mol (1262.0919 without restraints) Performing minimization step: 4930. Total energy = 1267.5559 kcal/mol (1262.0527 without restraints) Performing minimization step: 4931. Total energy = 1267.5169 kcal/mol (1262.0134 without restraints) Performing minimization step: 4932. Total energy = 1267.4778 kcal/mol (1261.9739 without restraints) Performing minimization step: 4933. Total energy = 1267.4386 kcal/mol (1261.9345 without restraints) Performing minimization step: 4934. Total energy = 1267.3993 kcal/mol (1261.8950 without restraints) Performing minimization step: 4935. Total energy = 1267.3606 kcal/mol (1261.8560 without restraints) Performing minimization step: 4936. Total energy = 1267.3214 kcal/mol (1261.8166 without restraints) Performing minimization step: 4937. Total energy = 1267.2820 kcal/mol (1261.7769 without restraints) Performing minimization step: 4938. Total energy = 1267.2431 kcal/mol (1261.7378 without restraints) Performing minimization step: 4939. Total energy = 1267.2038 kcal/mol (1261.6981 without restraints) Performing minimization step: 4940. Total energy = 1267.1646 kcal/mol (1261.6587 without restraints) Performing minimization step: 4941. Total energy = 1267.1255 kcal/mol (1261.6194 without restraints) Performing minimization step: 4942. Total energy = 1267.0861 kcal/mol (1261.5797 without restraints) Performing minimization step: 4943. Total energy = 1267.0469 kcal/mol (1261.5403 without restraints) Performing minimization step: 4944. Total energy = 1267.0075 kcal/mol (1261.5006 without restraints) Performing minimization step: 4945. Total energy = 1266.9686 kcal/mol (1261.4615 without restraints) Performing minimization step: 4946. Total energy = 1266.9291 kcal/mol (1261.4218 without restraints) Performing minimization step: 4947. Total energy = 1266.8903 kcal/mol (1261.3827 without restraints) Performing minimization step: 4948. Total energy = 1266.8512 kcal/mol (1261.3433 without restraints) Performing minimization step: 4949. Total energy = 1266.8130 kcal/mol (1261.3048 without restraints) Performing minimization step: 4950. Total energy = 1266.7738 kcal/mol (1261.2654 without restraints) Performing minimization step: 4951. Total energy = 1266.7343 kcal/mol (1261.2256 without restraints) Performing minimization step: 4952. Total energy = 1266.6951 kcal/mol (1261.1862 without restraints) Performing minimization step: 4953. Total energy = 1266.6561 kcal/mol (1261.1469 without restraints) Performing minimization step: 4954. Total energy = 1266.6167 kcal/mol (1261.1073 without restraints) Performing minimization step: 4955. Total energy = 1266.5772 kcal/mol (1261.0675 without restraints) Performing minimization step: 4956. Total energy = 1266.5381 kcal/mol (1261.0281 without restraints) Performing minimization step: 4957. Total energy = 1266.4989 kcal/mol (1260.9887 without restraints) Performing minimization step: 4958. Total energy = 1266.4601 kcal/mol (1260.9496 without restraints) Performing minimization step: 4959. Total energy = 1266.4210 kcal/mol (1260.9103 without restraints) Performing minimization step: 4960. Total energy = 1266.3819 kcal/mol (1260.8709 without restraints) Performing minimization step: 4961. Total energy = 1266.3426 kcal/mol (1260.8314 without restraints) Performing minimization step: 4962. Total energy = 1266.3034 kcal/mol (1260.7920 without restraints) Performing minimization step: 4963. Total energy = 1266.2644 kcal/mol (1260.7527 without restraints) Performing minimization step: 4964. Total energy = 1266.2253 kcal/mol (1260.7133 without restraints) Performing minimization step: 4965. Total energy = 1266.1857 kcal/mol (1260.6735 without restraints) Performing minimization step: 4966. Total energy = 1266.1471 kcal/mol (1260.6347 without restraints) Performing minimization step: 4967. Total energy = 1266.1083 kcal/mol (1260.5956 without restraints) Performing minimization step: 4968. Total energy = 1266.0692 kcal/mol (1260.5563 without restraints) Performing minimization step: 4969. Total energy = 1266.0301 kcal/mol (1260.5169 without restraints) Performing minimization step: 4970. Total energy = 1265.9910 kcal/mol (1260.4776 without restraints) Performing minimization step: 4971. Total energy = 1265.9519 kcal/mol (1260.4382 without restraints) Performing minimization step: 4972. Total energy = 1265.9129 kcal/mol (1260.3989 without restraints) Performing minimization step: 4973. Total energy = 1265.8738 kcal/mol (1260.3596 without restraints) Performing minimization step: 4974. Total energy = 1265.8349 kcal/mol (1260.3205 without restraints) Performing minimization step: 4975. Total energy = 1265.7959 kcal/mol (1260.2812 without restraints) Performing minimization step: 4976. Total energy = 1265.7568 kcal/mol (1260.2419 without restraints) Performing minimization step: 4977. Total energy = 1265.7178 kcal/mol (1260.2026 without restraints) Performing minimization step: 4978. Total energy = 1265.6788 kcal/mol (1260.1635 without restraints) Performing minimization step: 4979. Total energy = 1265.6399 kcal/mol (1260.1242 without restraints) Performing minimization step: 4980. Total energy = 1265.6009 kcal/mol (1260.0850 without restraints) Performing minimization step: 4981. Total energy = 1265.5618 kcal/mol (1260.0457 without restraints) Performing minimization step: 4982. Total energy = 1265.5228 kcal/mol (1260.0064 without restraints) Performing minimization step: 4983. Total energy = 1265.4835 kcal/mol (1259.9669 without restraints) Performing minimization step: 4984. Total energy = 1265.4445 kcal/mol (1259.9276 without restraints) Performing minimization step: 4985. Total energy = 1265.4054 kcal/mol (1259.8883 without restraints) Performing minimization step: 4986. Total energy = 1265.3665 kcal/mol (1259.8491 without restraints) Performing minimization step: 4987. Total energy = 1265.3272 kcal/mol (1259.8096 without restraints) Performing minimization step: 4988. Total energy = 1265.2886 kcal/mol (1259.7707 without restraints) Performing minimization step: 4989. Total energy = 1265.2494 kcal/mol (1259.7313 without restraints) Performing minimization step: 4990. Total energy = 1265.2104 kcal/mol (1259.6920 without restraints) Performing minimization step: 4991. Total energy = 1265.1709 kcal/mol (1259.6522 without restraints) Performing minimization step: 4992. Total energy = 1265.1318 kcal/mol (1259.6130 without restraints) Performing minimization step: 4993. Total energy = 1265.0928 kcal/mol (1259.5737 without restraints) Performing minimization step: 4994. Total energy = 1265.0538 kcal/mol (1259.5345 without restraints) Performing minimization step: 4995. Total energy = 1265.0148 kcal/mol (1259.4952 without restraints) Performing minimization step: 4996. Total energy = 1264.9758 kcal/mol (1259.4560 without restraints) Performing minimization step: 4997. Total energy = 1264.9369 kcal/mol (1259.4169 without restraints) Performing minimization step: 4998. Total energy = 1264.8980 kcal/mol (1259.3777 without restraints) Performing minimization step: 4999. Total energy = 1264.8590 kcal/mol (1259.3384 without restraints) Performing minimization step: 5000. Total energy = 1264.8207 kcal/mol (1259.2999 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/b76a8b88/tmp/m2d14.pred2.min-rev_refx/m2d14.pred2.min-rev_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to m2d14.pred2.min-rev_refx.pdb DONE!