============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2.pdb ============================================================================= Error: recognition of atom ATOM 19 'H5' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 20 'HO5 DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 24 1H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 25 2H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 47 C5M DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 51 HN3 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 52 1HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 53 2HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 54 3HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 81 'H5' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 85 1H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 86 2H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 114 'H5' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 118 1H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 119 2H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 144 'H5' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 148 1H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 149 2H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 176 'H5' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 180 1H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 181 2H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 203 C5M DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 207 HN3 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 208 1HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 209 2HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 210 3HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 238 'H5' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 242 1H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 243 2H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 270 'H5' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 274 1H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 275 2H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 302 'H5' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 306 1H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 307 2H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 329 C5M DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 333 HN3 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 334 1HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 335 2HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 336 3HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 358 C5M DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 362 HN3 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 363 1HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 364 2HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 365 3HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 390 'H5' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 394 1H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 395 2H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 420 'H5' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 424 1H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 425 2H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 450 'H5' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 454 1H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 455 2H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 483 'H5' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 487 1H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 488 2H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 515 'H5' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 519 1H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 520 2H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 547 'H5' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 551 1H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 552 2H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 580 'H5' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 584 1H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 585 2H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 612 'H5' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 616 1H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 617 2H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 642 'H5' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 646 1H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 647 2H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 675 'H5' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 679 1H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 680 2H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 705 'H5' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 709 1H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 710 2H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 738 'H5' DG A 24 ... failed. Atom erased. Error: recognition of atom ATOM 742 1H2' DG A 24 ... failed. Atom erased. Error: recognition of atom ATOM 743 2H2' DG A 24 ... failed. Atom erased. Error: recognition of atom ATOM 765 C5M DT A 25 ... failed. Atom erased. Error: recognition of atom ATOM 769 HN3 DT A 25 ... failed. Atom erased. Error: recognition of atom ATOM 770 1HM5 DT A 25 ... failed. Atom erased. Error: recognition of atom ATOM 771 2HM5 DT A 25 ... failed. Atom erased. Error: recognition of atom ATOM 772 3HM5 DT A 25 ... failed. Atom erased. Error: recognition of atom ATOM 797 'H5' DC A 26 ... failed. Atom erased. Error: recognition of atom ATOM 801 1H2' DC A 26 ... failed. Atom erased. Error: recognition of atom ATOM 802 2H2' DC A 26 ... failed. Atom erased. Error: recognition of atom ATOM 827 'H5' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 831 1H2' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 832 2H2' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 860 'H5' DG A 28 ... failed. Atom erased. Error: recognition of atom ATOM 864 1H2' DG A 28 ... failed. Atom erased. Error: recognition of atom ATOM 865 2H2' DG A 28 ... failed. Atom erased. Error: recognition of atom ATOM 893 'H5' DG A 29 ... failed. Atom erased. Error: recognition of atom ATOM 897 1H2' DG A 29 ... failed. Atom erased. Error: recognition of atom ATOM 898 2H2' DG A 29 ... failed. Atom erased. Error: recognition of atom ATOM 926 'H5' DG A 30 ... failed. Atom erased. Error: recognition of atom ATOM 930 1H2' DG A 30 ... failed. Atom erased. Error: recognition of atom ATOM 931 2H2' DG A 30 ... failed. Atom erased. Error: recognition of atom ATOM 956 'H5' DC A 31 ... failed. Atom erased. Error: recognition of atom ATOM 960 1H2' DC A 31 ... failed. Atom erased. Error: recognition of atom ATOM 961 2H2' DC A 31 ... failed. Atom erased. Error: recognition of atom ATOM 988 'H5' DA A 32 ... failed. Atom erased. Error: recognition of atom ATOM 992 1H2' DA A 32 ... failed. Atom erased. Error: recognition of atom ATOM 993 2H2' DA A 32 ... failed. Atom erased. Error: recognition of atom ATOM 1015 C5M DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1019 HN3 DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1020 1HM5 DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1021 2HM5 DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1022 3HM5 DT A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1049 'H5' DA A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1053 1H2' DA A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1054 2H2' DA A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1079 'H5' DC A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1083 1H2' DC A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1084 2H2' DC A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1106 C5M DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1110 HN3 DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1111 1HM5 DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1112 2HM5 DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1113 3HM5 DT A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1135 C5M DT A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1139 HN3 DT A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1140 1HM5 DT A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1141 2HM5 DT A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1142 3HM5 DT A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1169 'H5' DA A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1173 1H2' DA A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1174 2H2' DA A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1199 'H5' DC A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1203 1H2' DC A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1204 2H2' DC A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1226 C5M DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1230 HN3 DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1231 1HM5 DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1232 2HM5 DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1233 3HM5 DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1255 C5M DT A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1259 HN3 DT A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1260 1HM5 DT A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1261 2HM5 DT A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1262 3HM5 DT A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1289 'H5' DA A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1293 1H2' DA A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1294 2H2' DA A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1316 C5M DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1320 HN3 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1321 1HM5 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1322 2HM5 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1323 3HM5 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1345 C5M DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1349 HN3 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1350 1HM5 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1351 2HM5 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1352 3HM5 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1377 'H5' DC A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1381 1H2' DC A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1382 2H2' DC A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1410 'H5' DG A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1414 1H2' DG A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1415 2H2' DG A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1443 'H5' DG A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1447 1H2' DG A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1448 2H2' DG A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1473 'H5' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1477 1H2' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1478 2H2' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1500 C5M DT A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1504 HN3 DT A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1505 1HM5 DT A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1506 2HM5 DT A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1507 3HM5 DT A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1532 'H5' DC A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1536 1H2' DC A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1537 2H2' DC A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1562 'H5' DC A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1566 1H2' DC A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1567 2H2' DC A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1594 'H5' DA A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1598 1H2' DA A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1599 2H2' DA A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1624 'H5' DC A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1628 1H2' DC A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1629 2H2' DC A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1651 C5M DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1655 HN3 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1656 1HM5 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1657 2HM5 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1658 3HM5 DT A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1685 'H5' DA A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1689 1H2' DA A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1690 2H2' DA A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1712 C5M DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1716 HN3 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1717 1HM5 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1718 2HM5 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1719 3HM5 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1741 C5M DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1745 HN3 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1746 1HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1747 2HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1748 3HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1776 'H5' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1780 1H2' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1781 2H2' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1808 'H5' DA A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1812 1H2' DA A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1813 2H2' DA A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1840 'H5' DA A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1844 1H2' DA A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1845 2H2' DA A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1870 'H5' DC A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1874 1H2' DC A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1875 2H2' DC A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1900 'H5' DC A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1904 1H2' DC A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1905 2H2' DC A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1932 'H5' DA A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1936 1H2' DA A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1937 2H2' DA A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1965 'H5' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1969 1H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1970 2H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1992 C5M DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 1996 HN3 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 1997 1HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 1998 2HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 1999 3HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2024 'H5' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2028 1H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2029 2H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2057 'H5' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2061 1H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2062 2H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2089 'H5' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2093 1H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2094 2H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2119 'H5' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2123 1H2' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2124 2H2' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2152 'H5' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2156 1H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2157 2H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2184 'H5' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2188 1H2' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2189 2H2' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2217 'H5' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2221 1H2' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2222 2H2' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2250 'H5' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2254 1H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2255 2H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2277 C5M DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2281 HN3 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2282 1HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2283 2HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2284 3HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2309 'H5' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2313 1H2' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2314 2H2' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2336 C5M DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2340 HN3 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2341 1HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2342 2HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2343 3HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2370 'H5' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2374 1H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2375 2H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2403 'H5' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2407 1H2' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2408 2H2' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2435 'H5' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2439 1H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2440 2H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2467 'H5' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2471 1H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2472 2H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2494 C5M DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2498 HN3 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2499 1HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2500 2HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2501 3HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2528 'H5' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2532 1H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2533 2H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2558 'H5' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2562 1H2' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2563 2H2' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2588 'H5' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2592 1H2' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2593 2H2' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2620 'H5' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2624 1H2' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2625 2H2' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2653 'H5' DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2654 'HO3 DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2658 1H2' DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2659 2H2' DG A 86 ... failed. Atom erased. Missing atom added: HETATM 1 P DA A 1 0.836 2.025 -2.070 1.00 0.00 P Missing atom added: HETATM 24 H5'2 DA A 1 1.965 -0.296 -0.666 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 1 2.195 -0.636 3.805 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 1 0.216 -0.365 3.898 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 2 0.250 -4.944 3.176 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 2 -3.050 -2.432 5.981 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 2 -3.452 -3.951 6.772 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 2 -5.275 1.220 5.102 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 2 -4.307 -1.119 1.289 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 2 -3.877 -0.295 0.715 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 2 -5.370 -1.207 1.046 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 2 -3.803 -2.047 1.011 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 3 -5.330 -6.813 6.799 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 3 -7.945 -4.913 9.588 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 3 -9.023 -4.361 7.998 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 4 -11.574 -8.129 7.427 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 4 -15.048 -5.135 7.528 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 4 -14.522 -4.599 5.675 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 5 -17.279 -7.023 4.136 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 5 -19.577 -3.871 2.001 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 5 -18.325 -4.360 0.522 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 6 -19.457 -7.203 -1.638 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 6 -20.092 -4.527 -3.241 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 6 -18.545 -5.152 -4.341 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 7 -22.361 -8.468 -6.772 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 7 -17.797 -6.787 -8.334 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 7 -18.109 -7.223 -10.010 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 7 -14.110 -6.774 -5.713 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 7 -16.929 -10.360 -4.805 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 7 -16.965 -10.221 -3.730 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 7 -16.163 -11.086 -5.064 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 7 -17.894 -10.691 -5.172 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 8 -18.805 -9.515 -12.628 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 8 -16.818 -6.683 -15.523 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 8 -15.155 -7.559 -14.843 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 9 -14.613 -10.536 -17.292 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 9 -10.444 -9.896 -16.047 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 9 -10.658 -11.521 -14.902 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 10 -10.755 -15.755 -17.276 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 10 -6.476 -13.700 -16.195 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 10 -6.631 -15.148 -14.826 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 11 -6.113 -18.689 -15.652 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 11 -8.206 -19.934 -11.489 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 11 -7.108 -21.305 -11.580 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 11 -7.153 -18.322 -6.955 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 11 -11.022 -17.609 -9.329 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 11 -11.144 -16.549 -9.105 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 11 -11.603 -18.198 -8.616 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 11 -11.386 -17.808 -10.337 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 12 -5.645 -23.988 -13.226 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 12 -2.978 -25.271 -17.265 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 12 -2.654 -26.792 -16.443 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 12 -0.313 -21.525 -17.394 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 12 -4.557 -19.957 -17.021 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 12 -4.427 -19.320 -17.877 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 12 -4.362 -19.430 -16.102 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 12 -5.532 -20.413 -17.012 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 13 -2.453 -25.321 -11.283 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 13 -4.029 -27.620 -7.595 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 13 -2.483 -28.881 -7.722 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 14 -0.703 -26.098 -4.964 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 14 -0.726 -28.802 -1.526 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 14 0.963 -29.461 -2.368 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 15 3.114 -27.370 -0.060 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 15 5.087 -31.127 1.290 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 15 6.191 -30.871 -0.357 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 16 9.152 -28.004 1.527 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 16 12.235 -31.227 0.822 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 16 12.148 -30.695 -1.104 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 17 14.255 -28.251 -2.526 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 17 16.083 -31.397 -3.262 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 17 15.546 -30.517 -4.975 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 18 17.193 -26.950 -6.921 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 18 15.188 -29.953 -10.153 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 18 15.109 -28.195 -11.102 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 19 16.710 -29.960 -12.163 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 19 16.535 -29.496 -16.982 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 19 15.765 -27.651 -16.955 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 20 19.339 -23.668 -15.624 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 20 15.053 -23.010 -17.720 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 20 14.795 -21.346 -16.643 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 21 17.239 -18.433 -18.728 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 21 13.887 -17.952 -21.253 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 21 13.219 -19.483 -20.154 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 22 12.788 -16.060 -15.875 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 22 10.884 -14.632 -13.359 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 22 11.268 -12.963 -14.390 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 23 6.275 -16.169 -16.202 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 23 4.491 -19.062 -15.483 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 23 3.117 -17.804 -16.209 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 24 3.329 -22.514 -19.625 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 24 4.473 -23.430 -22.191 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 24 5.922 -24.142 -21.013 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 25 4.871 -27.725 -20.209 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 25 5.296 -28.034 -17.206 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 25 6.847 -28.411 -16.466 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 25 7.762 -25.337 -12.716 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 25 4.582 -23.003 -15.082 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 25 5.038 -22.008 -15.034 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 25 3.889 -23.111 -14.239 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 25 4.010 -23.079 -16.013 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 26 8.672 -31.763 -17.815 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 26 9.245 -32.216 -14.492 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 26 8.528 -33.714 -15.604 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 27 12.504 -34.776 -13.759 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 27 12.952 -37.806 -10.325 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 27 11.162 -37.539 -9.477 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 28 9.236 -40.638 -9.375 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 28 8.874 -40.859 -5.040 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 28 7.254 -39.745 -5.403 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 29 4.828 -42.661 -5.609 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 29 3.094 -40.700 -2.119 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 29 2.013 -39.637 -3.423 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 30 -0.920 -42.025 -3.477 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 30 -2.944 -38.642 -1.733 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 30 -3.363 -38.068 -3.602 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 31 -6.923 -39.748 -3.941 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 31 -8.219 -35.598 -4.941 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 31 -7.492 -35.957 -6.768 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 32 -11.286 -36.953 -7.592 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 32 -10.293 -32.792 -9.489 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 32 -9.333 -33.744 -10.961 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 33 -12.918 -33.492 -13.092 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 33 -8.793 -32.718 -15.398 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 33 -9.800 -32.198 -16.744 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 33 -5.184 -35.168 -14.910 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 33 -8.837 -37.338 -13.117 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 33 -8.382 -37.543 -12.154 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 33 -8.709 -38.191 -13.779 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 33 -9.893 -37.122 -12.991 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 34 -11.711 -32.522 -19.491 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 34 -7.384 -31.817 -21.105 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 34 -7.118 -33.795 -21.230 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 35 -7.937 -34.162 -25.148 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 35 -4.000 -36.270 -25.351 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 35 -4.972 -37.854 -24.616 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 36 -5.042 -38.283 -28.621 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 36 -2.805 -41.114 -25.291 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 36 -2.222 -42.073 -26.646 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 36 -4.371 -42.088 -21.361 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 36 -7.694 -40.269 -23.983 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 36 -7.960 -39.479 -23.293 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 36 -8.328 -41.135 -23.831 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 36 -7.771 -39.920 -25.005 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 37 -2.349 -44.362 -29.239 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 37 -2.623 -46.094 -24.566 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 37 -1.976 -47.602 -25.200 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 37 -5.588 -45.596 -21.582 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 37 -7.118 -43.665 -25.450 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 37 -7.410 -42.706 -25.020 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 37 -7.988 -44.327 -25.475 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 37 -6.763 -43.506 -26.470 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 38 -2.247 -50.878 -26.508 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 38 -2.572 -52.108 -22.206 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 38 -4.551 -51.852 -22.327 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 39 -4.984 -55.857 -22.950 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 39 -7.113 -55.465 -18.893 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 39 -8.645 -54.714 -19.936 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 40 -9.795 -58.506 -19.724 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 40 -12.409 -54.333 -18.830 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 40 -13.603 -55.321 -17.996 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 40 -12.572 -50.830 -21.499 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 40 -11.895 -54.659 -23.983 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 40 -11.064 -54.290 -24.580 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 40 -12.829 -54.516 -24.525 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 40 -11.754 -55.716 -23.771 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 41 -16.542 -57.815 -17.819 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 41 -17.732 -53.326 -19.248 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 41 -19.381 -53.680 -18.748 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 41 -16.042 -51.031 -22.563 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 41 -15.434 -55.562 -23.155 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 41 -14.371 -55.549 -23.406 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 41 -16.018 -55.542 -24.081 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 41 -15.660 -56.485 -22.616 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 42 -22.947 -55.299 -19.335 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 42 -23.646 -50.976 -20.718 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 42 -22.947 -51.492 -22.519 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 43 -26.782 -51.993 -23.290 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 43 -24.051 -49.827 -26.603 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 43 -25.564 -49.250 -27.293 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 43 -20.345 -51.426 -28.228 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 43 -22.768 -54.793 -26.230 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 43 -21.939 -55.249 -25.692 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 43 -22.910 -55.305 -27.183 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 43 -23.676 -54.875 -25.636 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 44 -29.205 -49.831 -28.773 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 44 -25.027 -49.533 -31.510 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 44 -25.944 -48.809 -32.826 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 44 -21.537 -52.124 -31.721 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 44 -24.931 -54.477 -29.761 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 44 -24.433 -54.746 -28.823 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 44 -24.780 -55.293 -30.481 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 44 -26.006 -54.383 -29.568 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 45 -26.386 -50.397 -34.877 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 45 -26.167 -52.928 -37.747 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 45 -25.105 -54.393 -36.898 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 46 -27.830 -56.895 -37.804 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 46 -24.952 -57.002 -41.519 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 46 -23.696 -57.972 -40.302 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 47 -24.931 -61.057 -42.021 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 47 -21.567 -62.438 -44.317 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 47 -21.011 -63.212 -42.560 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 48 -22.346 -66.868 -42.887 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 48 -18.594 -68.210 -40.909 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 48 -19.574 -67.902 -39.194 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 49 -20.873 -71.849 -39.767 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 49 -19.288 -71.124 -35.399 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 49 -19.358 -72.874 -35.229 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 49 -21.047 -68.152 -32.747 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 49 -22.728 -67.417 -36.940 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 49 -22.521 -66.349 -36.953 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 49 -23.750 -67.589 -36.605 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 49 -22.597 -67.828 -37.939 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 50 -21.195 -76.220 -34.571 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 50 -20.360 -75.252 -30.126 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 50 -22.092 -74.253 -30.130 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 51 -25.683 -75.929 -29.627 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 51 -25.141 -74.678 -25.848 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 51 -26.708 -73.852 -26.775 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 52 -29.326 -75.961 -24.783 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 52 -30.536 -72.487 -22.508 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 52 -31.578 -72.050 -24.157 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 53 -35.053 -73.056 -23.351 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 53 -36.519 -69.234 -25.368 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 53 -36.424 -70.236 -27.095 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 54 -39.713 -72.875 -23.607 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 54 -40.673 -71.640 -28.575 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 54 -42.412 -71.787 -28.357 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 54 -37.879 -72.299 -31.818 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 54 -37.078 -75.398 -28.519 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 54 -35.992 -75.279 -28.520 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 54 -37.342 -76.252 -29.151 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 54 -37.412 -75.598 -27.498 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 55 -42.910 -75.030 -29.686 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 55 -44.716 -73.888 -33.512 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 55 -44.496 -71.973 -32.981 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 56 -39.155 -74.472 -32.933 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 56 -40.912 -70.255 -35.108 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 56 -39.546 -70.037 -36.195 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 56 -43.388 -67.035 -34.290 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 56 -41.533 -68.688 -30.421 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 56 -42.449 -68.732 -29.829 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 56 -41.033 -67.733 -30.237 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 56 -40.871 -69.501 -30.117 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 57 -36.066 -69.596 -37.684 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 57 -36.988 -65.120 -38.345 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 57 -35.529 -65.186 -39.326 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 57 -37.880 -62.559 -34.869 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 57 -38.471 -66.909 -33.495 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 57 -39.488 -66.787 -33.135 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 57 -37.768 -66.752 -32.679 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 57 -38.341 -67.905 -33.907 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 58 -31.419 -66.160 -38.138 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 58 -31.397 -61.989 -36.150 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 58 -31.818 -62.883 -34.412 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 59 -28.197 -64.376 -32.366 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 59 -30.709 -59.993 -31.534 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 59 -29.501 -59.070 -32.832 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 60 -32.120 -58.127 -31.250 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 60 -33.740 -59.141 -27.148 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 60 -32.603 -60.779 -27.291 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 61 -29.476 -59.423 -25.239 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 61 -28.844 -62.513 -22.191 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 61 -27.571 -63.234 -23.554 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 62 -23.594 -60.429 -22.923 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 62 -21.968 -64.722 -23.009 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 62 -22.140 -64.582 -24.996 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 63 -18.112 -63.245 -24.529 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 63 -16.370 -66.931 -25.952 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 63 -16.649 -66.128 -27.761 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 64 -13.253 -64.653 -27.930 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 64 -12.777 -67.492 -31.094 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 64 -13.509 -66.104 -32.334 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 65 -10.180 -64.108 -33.408 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 65 -14.071 -62.880 -36.020 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 65 -12.923 -62.248 -37.195 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 65 -17.115 -60.568 -35.183 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 65 -15.217 -61.518 -31.131 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 65 -16.163 -61.728 -30.615 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 65 -14.969 -60.457 -30.974 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 65 -14.430 -62.124 -30.663 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 66 -10.293 -59.640 -38.664 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 66 -13.301 -58.417 -41.761 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 66 -14.076 -57.254 -40.331 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 67 -11.379 -54.234 -41.812 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 67 -15.727 -52.961 -43.183 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 67 -15.987 -52.233 -41.339 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 68 -14.170 -48.506 -43.317 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 68 -18.014 -46.676 -42.572 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 68 -17.350 -46.397 -40.707 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 69 -16.295 -42.691 -42.733 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 69 -19.640 -40.646 -40.539 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 69 -18.310 -40.609 -39.047 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 70 -16.396 -36.448 -40.550 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 70 -17.671 -34.033 -37.494 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 70 -16.511 -35.261 -36.425 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 71 -13.602 -32.923 -35.948 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 71 -13.052 -33.918 -31.666 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 71 -11.845 -35.304 -32.454 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 72 -8.721 -33.402 -32.116 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 72 -6.133 -36.808 -30.874 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 72 -5.420 -36.366 -32.689 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 73 -2.850 -34.339 -30.582 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 73 -0.522 -37.731 -32.708 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 73 -0.459 -36.603 -34.358 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 74 3.247 -35.845 -33.431 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 74 3.349 -36.183 -37.936 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 74 5.081 -35.954 -37.736 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 74 0.457 -33.799 -40.371 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 74 -0.585 -33.287 -35.924 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 74 -1.633 -33.567 -35.988 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 74 -0.484 -32.207 -36.006 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 74 -0.169 -33.625 -34.979 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 75 7.699 -33.564 -36.964 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 75 7.744 -33.016 -41.403 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 75 6.629 -31.389 -41.078 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 76 10.172 -28.659 -40.556 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 76 5.444 -27.311 -40.710 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 76 5.910 -25.706 -41.258 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 76 2.175 -26.939 -38.529 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 76 5.255 -29.261 -36.103 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 76 4.624 -30.116 -35.825 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 76 5.180 -28.507 -35.305 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 76 6.297 -29.607 -36.146 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 77 8.090 -23.822 -39.454 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 77 9.361 -21.025 -41.178 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 77 9.062 -22.537 -42.451 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 78 4.412 -20.325 -40.319 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 78 1.047 -20.027 -42.382 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 78 1.277 -21.696 -41.307 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 79 -0.514 -22.153 -37.668 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 79 -2.356 -22.958 -35.796 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 79 -3.386 -22.579 -37.467 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 80 -4.037 -25.142 -40.965 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 80 -4.169 -23.027 -44.883 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 80 -2.641 -24.273 -45.219 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 81 -4.794 -27.204 -46.290 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 81 -0.182 -27.937 -47.166 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 81 -0.758 -28.944 -48.488 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 81 2.740 -29.040 -44.173 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 81 -1.137 -28.069 -41.923 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 81 -0.707 -27.370 -41.211 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 81 -1.162 -29.068 -41.490 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 81 -2.145 -27.756 -42.182 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 82 -1.912 -32.232 -49.884 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 82 2.104 -33.732 -48.235 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 82 1.141 -34.308 -46.581 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 83 -0.656 -37.218 -45.747 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 83 2.528 -38.386 -43.135 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 83 0.678 -38.578 -42.401 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 84 -1.561 -41.866 -42.649 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 84 -0.380 -43.090 -38.800 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 84 -2.320 -42.673 -39.042 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 85 -3.245 -47.138 -39.447 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 85 -5.920 -45.919 -35.855 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 85 -7.285 -45.410 -37.224 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 86 -8.765 -49.705 -36.675 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 86 -12.693 -47.914 -35.348 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 86 -13.142 -47.505 -37.253 1.00 0.00 H Number of atoms: 2723 Number of residues: 86 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. A 1 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. A 1 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. A 1 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. A 1 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. A 1 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2937 Number of angles built: 5334 Number of dihedrals built: 7967 Number of impropers built: 578 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 3697732 Number of van der Waals pairs: 300128 Number of H-bonds built: 37 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 7 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 109584.8076 kcal/mol (109352.5727 without restraints) Performing minimization step: 2. Total energy = 107712.2098 kcal/mol (107486.8107 without restraints) Performing minimization step: 3. Total energy = 105896.2641 kcal/mol (105677.4048 without restraints) Performing minimization step: 4. Total energy = 104134.5383 kcal/mol (103921.9405 without restraints) Performing minimization step: 5. Total energy = 102424.7432 kcal/mol (102218.1447 without restraints) Performing minimization step: 6. Total energy = 100764.7221 kcal/mol (100563.8757 without restraints) Performing minimization step: 7. Total energy = 99152.4411 kcal/mol (98957.1138 without restraints) Performing minimization step: 8. Total energy = 97585.9807 kcal/mol (97395.9523 without restraints) Performing minimization step: 9. Total energy = 96063.5275 kcal/mol (95878.5902 without restraints) Performing minimization step: 10. Total energy = 94583.3667 kcal/mol (94403.3234 without restraints) Performing minimization step: 11. Total energy = 93143.8755 kcal/mol (92968.5400 without restraints) Performing minimization step: 12. Total energy = 91743.5169 kcal/mol (91572.7126 without restraints) Performing minimization step: 13. Total energy = 90380.8336 kcal/mol (90214.3930 without restraints) Performing minimization step: 14. Total energy = 89054.4430 kcal/mol (88892.2071 without restraints) Performing minimization step: 15. Total energy = 87763.0319 kcal/mol (87604.8496 without restraints) Performing minimization step: 16. Total energy = 86505.3524 kcal/mol (86351.0801 without restraints) Performing minimization step: 17. Total energy = 85280.2171 kcal/mol (85129.7182 without restraints) Performing minimization step: 18. Total energy = 84086.4959 kcal/mol (83939.6403 without restraints) Performing minimization step: 19. Total energy = 82923.1120 kcal/mol (82779.7754 without restraints) Performing minimization step: 20. Total energy = 81789.0383 kcal/mol (81649.1025 without restraints) Performing minimization step: 21. Total energy = 80683.2954 kcal/mol (80546.6474 without restraints) Performing minimization step: 22. Total energy = 79604.9480 kcal/mol (79471.4798 without restraints) Performing minimization step: 23. Total energy = 78553.1009 kcal/mol (78422.7095 without restraints) Performing minimization step: 24. Total energy = 77526.8997 kcal/mol (77399.4862 without restraints) Performing minimization step: 25. Total energy = 76525.5260 kcal/mol (76400.9960 without restraints) Performing minimization step: 26. Total energy = 75548.1964 kcal/mol (75426.4594 without restraints) Performing minimization step: 27. Total energy = 74594.1598 kcal/mol (74475.1290 without restraints) Performing minimization step: 28. Total energy = 73662.6968 kcal/mol (73546.2891 without restraints) Performing minimization step: 29. Total energy = 72753.1167 kcal/mol (72639.2522 without restraints) Performing minimization step: 30. Total energy = 71864.7564 kcal/mol (71753.3583 without restraints) Performing minimization step: 31. Total energy = 70996.9794 kcal/mol (70887.9743 without restraints) Performing minimization step: 32. Total energy = 70149.1739 kcal/mol (70042.4910 without restraints) Performing minimization step: 33. Total energy = 69320.7517 kcal/mol (69216.3228 without restraints) Performing minimization step: 34. Total energy = 68511.1468 kcal/mol (68408.9063 without restraints) Performing minimization step: 35. Total energy = 67719.8147 kcal/mol (67619.6997 without restraints) Performing minimization step: 36. Total energy = 66946.2309 kcal/mol (66848.1806 without restraints) Performing minimization step: 37. Total energy = 66189.8904 kcal/mol (66093.8463 without restraints) Performing minimization step: 38. Total energy = 65450.3063 kcal/mol (65356.2120 without restraints) Performing minimization step: 39. Total energy = 64727.0094 kcal/mol (64634.8105 without restraints) Performing minimization step: 40. Total energy = 64019.5470 kcal/mol (63929.1910 without restraints) Performing minimization step: 41. Total energy = 63327.4823 kcal/mol (63238.9185 without restraints) Performing minimization step: 42. Total energy = 62650.3937 kcal/mol (62563.5733 without restraints) Performing minimization step: 43. Total energy = 61987.8741 kcal/mol (61902.7499 without restraints) Performing minimization step: 44. Total energy = 61339.5304 kcal/mol (61256.0567 without restraints) Performing minimization step: 45. Total energy = 60704.9825 kcal/mol (60623.1153 without restraints) Performing minimization step: 46. Total energy = 60083.8638 kcal/mol (60003.5604 without restraints) Performing minimization step: 47. Total energy = 59475.8183 kcal/mol (59397.0377 without restraints) Performing minimization step: 48. Total energy = 58880.5029 kcal/mol (58803.2049 without restraints) Performing minimization step: 49. Total energy = 58297.5853 kcal/mol (58221.7315 without restraints) Performing minimization step: 50. Total energy = 57726.7440 kcal/mol (57652.2971 without restraints) Performing minimization step: 51. Total energy = 57167.6681 kcal/mol (57094.5919 without restraints) Performing minimization step: 52. Total energy = 56620.0557 kcal/mol (56548.3152 without restraints) Performing minimization step: 53. Total energy = 56083.6151 kcal/mol (56013.1764 without restraints) Performing minimization step: 54. Total energy = 55558.0636 kcal/mol (55488.8939 without restraints) Performing minimization step: 55. Total energy = 55043.1272 kcal/mol (54975.1946 without restraints) Performing minimization step: 56. Total energy = 54538.5400 kcal/mol (54471.8137 without restraints) Performing minimization step: 57. Total energy = 54044.0450 kcal/mol (53978.4950 without restraints) Performing minimization step: 58. Total energy = 53559.3922 kcal/mol (53494.9895 without restraints) Performing minimization step: 59. Total energy = 53084.3400 kcal/mol (53021.0564 without restraints) Performing minimization step: 60. Total energy = 52618.6524 kcal/mol (52556.4607 without restraints) Performing minimization step: 61. Total energy = 52162.1022 kcal/mol (52100.9758 without restraints) Performing minimization step: 62. Total energy = 51714.4675 kcal/mol (51654.3808 without restraints) Performing minimization step: 63. Total energy = 51275.5339 kcal/mol (51216.4617 without restraints) Performing minimization step: 64. Total energy = 50845.0926 kcal/mol (50787.0108 without restraints) Performing minimization step: 65. Total energy = 50422.9414 kcal/mol (50365.8263 without restraints) Performing minimization step: 66. Total energy = 50008.8829 kcal/mol (49952.7118 without restraints) Performing minimization step: 67. Total energy = 49602.7262 kcal/mol (49547.4768 without restraints) Performing minimization step: 68. Total energy = 49204.2859 kcal/mol (49149.9365 without restraints) Performing minimization step: 69. Total energy = 48813.3809 kcal/mol (48759.9105 without restraints) Performing minimization step: 70. Total energy = 48429.8359 kcal/mol (48377.2241 without restraints) Performing minimization step: 71. Total energy = 48053.4802 kcal/mol (48001.7071 without restraints) Performing minimization step: 72. Total energy = 47684.1479 kcal/mol (47633.1943 without restraints) Performing minimization step: 73. Total energy = 47321.6774 kcal/mol (47271.5244 without restraints) Performing minimization step: 74. Total energy = 46965.9121 kcal/mol (46916.5415 without restraints) Performing minimization step: 75. Total energy = 46616.6991 kcal/mol (46568.0931 without restraints) Performing minimization step: 76. Total energy = 46273.8896 kcal/mol (46226.0309 without restraints) Performing minimization step: 77. Total energy = 45937.3389 kcal/mol (45890.2106 without restraints) Performing minimization step: 78. Total energy = 45606.9062 kcal/mol (45560.4918 without restraints) Performing minimization step: 79. Total energy = 45282.4543 kcal/mol (45236.7381 without restraints) Performing minimization step: 80. Total energy = 44963.8500 kcal/mol (44918.8162 without restraints) Performing minimization step: 81. Total energy = 44650.9627 kcal/mol (44606.5963 without restraints) Performing minimization step: 82. Total energy = 44343.6663 kcal/mol (44299.9525 without restraints) Performing minimization step: 83. Total energy = 44041.8372 kcal/mol (43998.7616 without restraints) Performing minimization step: 84. Total energy = 43745.3552 kcal/mol (43702.9039 without restraints) Performing minimization step: 85. Total energy = 43454.1033 kcal/mol (43412.2625 without restraints) Performing minimization step: 86. Total energy = 43167.9671 kcal/mol (43126.7236 without restraints) Performing minimization step: 87. Total energy = 42886.8355 kcal/mol (42846.1763 without restraints) Performing minimization step: 88. Total energy = 42610.5998 kcal/mol (42570.5123 without restraints) Performing minimization step: 89. Total energy = 42339.1545 kcal/mol (42299.6263 without restraints) Performing minimization step: 90. Total energy = 42072.3963 kcal/mol (42033.4155 without restraints) Performing minimization step: 91. Total energy = 41810.2252 kcal/mol (41771.7801 without restraints) Performing minimization step: 92. Total energy = 41552.5422 kcal/mol (41514.6212 without restraints) Performing minimization step: 93. Total energy = 41299.2519 kcal/mol (41261.8438 without restraints) Performing minimization step: 94. Total energy = 41050.2611 kcal/mol (41013.3552 without restraints) Performing minimization step: 95. Total energy = 40805.4785 kcal/mol (40769.0641 without restraints) Performing minimization step: 96. Total energy = 40564.8153 kcal/mol (40528.8820 without restraints) Performing minimization step: 97. Total energy = 40328.1846 kcal/mol (40292.7224 without restraints) Performing minimization step: 98. Total energy = 40095.5019 kcal/mol (40060.5008 without restraints) Performing minimization step: 99. Total energy = 39866.6844 kcal/mol (39832.1348 without restraints) Performing minimization step: 100. Total energy = 39641.6516 kcal/mol (39607.5442 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 101. Total energy = 39420.3243 kcal/mol (39386.6497 without restraints) Performing minimization step: 102. Total energy = 39202.6258 kcal/mol (39169.3752 without restraints) Performing minimization step: 103. Total energy = 38988.4815 kcal/mol (38955.6460 without restraints) Performing minimization step: 104. Total energy = 38777.8169 kcal/mol (38745.3880 without restraints) Performing minimization step: 105. Total energy = 38570.5608 kcal/mol (38538.5302 without restraints) Performing minimization step: 106. Total energy = 38366.6430 kcal/mol (38335.0025 without restraints) Performing minimization step: 107. Total energy = 38165.9953 kcal/mol (38134.7368 without restraints) Performing minimization step: 108. Total energy = 37968.5507 kcal/mol (37937.6666 without restraints) Performing minimization step: 109. Total energy = 37774.2442 kcal/mol (37743.7267 without restraints) Performing minimization step: 110. Total energy = 37583.0116 kcal/mol (37552.8534 without restraints) Performing minimization step: 111. Total energy = 37394.7903 kcal/mol (37364.9840 without restraints) Performing minimization step: 112. Total energy = 37209.5200 kcal/mol (37180.0585 without restraints) Performing minimization step: 113. Total energy = 37027.1405 kcal/mol (36998.0169 without restraints) Performing minimization step: 114. Total energy = 36847.5939 kcal/mol (36818.8013 without restraints) Performing minimization step: 115. Total energy = 36670.8229 kcal/mol (36642.3548 without restraints) Performing minimization step: 116. Total energy = 36496.7719 kcal/mol (36468.6217 without restraints) Performing minimization step: 117. Total energy = 36325.3865 kcal/mol (36297.5479 without restraints) Performing minimization step: 118. Total energy = 36156.6133 kcal/mol (36129.0800 without restraints) Performing minimization step: 119. Total energy = 35990.4003 kcal/mol (35963.1663 without restraints) Performing minimization step: 120. Total energy = 35826.6965 kcal/mol (35799.7559 without restraints) Performing minimization step: 121. Total energy = 35665.4524 kcal/mol (35638.7993 without restraints) Performing minimization step: 122. Total energy = 35506.6187 kcal/mol (35480.2474 without restraints) Performing minimization step: 123. Total energy = 35350.1481 kcal/mol (35324.0531 without restraints) Performing minimization step: 124. Total energy = 35195.9936 kcal/mol (35170.1694 without restraints) Performing minimization step: 125. Total energy = 35044.1099 kcal/mol (35018.5511 without restraints) Performing minimization step: 126. Total energy = 34894.4521 kcal/mol (34869.1536 without restraints) Performing minimization step: 127. Total energy = 34746.9767 kcal/mol (34721.9334 without restraints) Performing minimization step: 128. Total energy = 34601.6404 kcal/mol (34576.8473 without restraints) Performing minimization step: 129. Total energy = 34458.4023 kcal/mol (34433.8545 without restraints) Performing minimization step: 130. Total energy = 34317.2207 kcal/mol (34292.9134 without restraints) Performing minimization step: 131. Total energy = 34178.0563 kcal/mol (34153.9849 without restraints) Performing minimization step: 132. Total energy = 34040.8695 kcal/mol (34017.0294 without restraints) Performing minimization step: 133. Total energy = 33905.6215 kcal/mol (33882.0081 without restraints) Performing minimization step: 134. Total energy = 33772.2753 kcal/mol (33748.8844 without restraints) Performing minimization step: 135. Total energy = 33640.7942 kcal/mol (33617.6214 without restraints) Performing minimization step: 136. Total energy = 33511.1416 kcal/mol (33488.1827 without restraints) Performing minimization step: 137. Total energy = 33383.2831 kcal/mol (33360.5341 without restraints) Performing minimization step: 138. Total energy = 33257.1838 kcal/mol (33234.6405 without restraints) Performing minimization step: 139. Total energy = 33132.8098 kcal/mol (33110.4684 without restraints) Performing minimization step: 140. Total energy = 33010.1284 kcal/mol (32987.9850 without restraints) Performing minimization step: 141. Total energy = 32889.1068 kcal/mol (32867.1576 without restraints) Performing minimization step: 142. Total energy = 32769.7134 kcal/mol (32747.9547 without restraints) Performing minimization step: 143. Total energy = 32651.9175 kcal/mol (32630.3457 without restraints) Performing minimization step: 144. Total energy = 32535.6882 kcal/mol (32514.2998 without restraints) Performing minimization step: 145. Total energy = 32420.9961 kcal/mol (32399.7875 without restraints) Performing minimization step: 146. Total energy = 32307.8120 kcal/mol (32286.7799 without restraints) Performing minimization step: 147. Total energy = 32196.1073 kcal/mol (32175.2483 without restraints) Performing minimization step: 148. Total energy = 32085.8540 kcal/mol (32065.1649 without restraints) Performing minimization step: 149. Total energy = 31977.0247 kcal/mol (31956.5023 without restraints) Performing minimization step: 150. Total energy = 31869.5929 kcal/mol (31849.2340 without restraints) Performing minimization step: 151. Total energy = 31763.5323 kcal/mol (31743.3340 without restraints) Performing minimization step: 152. Total energy = 31658.8171 kcal/mol (31638.7761 without restraints) Performing minimization step: 153. Total energy = 31555.4218 kcal/mol (31535.5354 without restraints) Performing minimization step: 154. Total energy = 31453.3221 kcal/mol (31433.5873 without restraints) Performing minimization step: 155. Total energy = 31352.4936 kcal/mol (31332.9077 without restraints) Performing minimization step: 156. Total energy = 31252.9124 kcal/mol (31233.4726 without restraints) Performing minimization step: 157. Total energy = 31154.5561 kcal/mol (31135.2596 without restraints) Performing minimization step: 158. Total energy = 31057.4011 kcal/mol (31038.2454 without restraints) Performing minimization step: 159. Total energy = 30961.4258 kcal/mol (30942.4080 without restraints) Performing minimization step: 160. Total energy = 30866.6090 kcal/mol (30847.7271 without restraints) Performing minimization step: 161. Total energy = 30772.9279 kcal/mol (30754.1789 without restraints) Performing minimization step: 162. Total energy = 30680.3622 kcal/mol (30661.7440 without restraints) Performing minimization step: 163. Total energy = 30588.8913 kcal/mol (30570.4012 without restraints) Performing minimization step: 164. Total energy = 30498.4953 kcal/mol (30480.1312 without restraints) Performing minimization step: 165. Total energy = 30409.1546 kcal/mol (30390.9141 without restraints) Performing minimization step: 166. Total energy = 30320.8497 kcal/mol (30302.7306 without restraints) Performing minimization step: 167. Total energy = 30233.5618 kcal/mol (30215.5618 without restraints) Performing minimization step: 168. Total energy = 30147.2724 kcal/mol (30129.3894 without restraints) Performing minimization step: 169. Total energy = 30061.9633 kcal/mol (30044.1952 without restraints) Performing minimization step: 170. Total energy = 29977.6171 kcal/mol (29959.9618 without restraints) Performing minimization step: 171. Total energy = 29894.2158 kcal/mol (29876.6712 without restraints) Performing minimization step: 172. Total energy = 29811.7426 kcal/mol (29794.3068 without restraints) Performing minimization step: 173. Total energy = 29730.1802 kcal/mol (29712.8514 without restraints) Performing minimization step: 174. Total energy = 29649.5137 kcal/mol (29632.2897 without restraints) Performing minimization step: 175. Total energy = 29569.7260 kcal/mol (29552.6051 without restraints) Performing minimization step: 176. Total energy = 29490.8014 kcal/mol (29473.7816 without restraints) Performing minimization step: 177. Total energy = 29412.7245 kcal/mol (29395.8042 without restraints) Performing minimization step: 178. Total energy = 29335.4803 kcal/mol (29318.6577 without restraints) Performing minimization step: 179. Total energy = 29259.0540 kcal/mol (29242.3273 without restraints) Performing minimization step: 180. Total energy = 29183.4309 kcal/mol (29166.7982 without restraints) Performing minimization step: 181. Total energy = 29108.5971 kcal/mol (29092.0573 without restraints) Performing minimization step: 182. Total energy = 29034.5385 kcal/mol (29018.0895 without restraints) Performing minimization step: 183. Total energy = 28961.2416 kcal/mol (28944.8819 without restraints) Performing minimization step: 184. Total energy = 28888.6928 kcal/mol (28872.4210 without restraints) Performing minimization step: 185. Total energy = 28816.8794 kcal/mol (28800.6938 without restraints) Performing minimization step: 186. Total energy = 28745.7878 kcal/mol (28729.6870 without restraints) Performing minimization step: 187. Total energy = 28675.4063 kcal/mol (28659.3888 without restraints) Performing minimization step: 188. Total energy = 28605.7218 kcal/mol (28589.7861 without restraints) Performing minimization step: 189. Total energy = 28536.7221 kcal/mol (28520.8668 without restraints) Performing minimization step: 190. Total energy = 28468.3958 kcal/mol (28452.6196 without restraints) Performing minimization step: 191. Total energy = 28400.7306 kcal/mol (28385.0319 without restraints) Performing minimization step: 192. Total energy = 28333.7161 kcal/mol (28318.0939 without restraints) Performing minimization step: 193. Total energy = 28267.3411 kcal/mol (28251.7940 without restraints) Performing minimization step: 194. Total energy = 28201.5939 kcal/mol (28186.1206 without restraints) Performing minimization step: 195. Total energy = 28136.4641 kcal/mol (28121.0633 without restraints) Performing minimization step: 196. Total energy = 28071.9409 kcal/mol (28056.6115 without restraints) Performing minimization step: 197. Total energy = 28008.0146 kcal/mol (27992.7553 without restraints) Performing minimization step: 198. Total energy = 27944.6748 kcal/mol (27929.4846 without restraints) Performing minimization step: 199. Total energy = 27881.9115 kcal/mol (27866.7889 without restraints) Performing minimization step: 200. Total energy = 27819.7148 kcal/mol (27804.6588 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 201. Total energy = 27758.0756 kcal/mol (27743.0852 without restraints) Performing minimization step: 202. Total energy = 27696.9841 kcal/mol (27682.0581 without restraints) Performing minimization step: 203. Total energy = 27636.4314 kcal/mol (27621.5687 without restraints) Performing minimization step: 204. Total energy = 27576.4079 kcal/mol (27561.6076 without restraints) Performing minimization step: 205. Total energy = 27516.9061 kcal/mol (27502.1670 without restraints) Performing minimization step: 206. Total energy = 27457.9165 kcal/mol (27443.2378 without restraints) Performing minimization step: 207. Total energy = 27399.4313 kcal/mol (27384.8118 without restraints) Performing minimization step: 208. Total energy = 27341.4412 kcal/mol (27326.8802 without restraints) Performing minimization step: 209. Total energy = 27283.9386 kcal/mol (27269.4349 without restraints) Performing minimization step: 210. Total energy = 27226.9156 kcal/mol (27212.4683 without restraints) Performing minimization step: 211. Total energy = 27170.3638 kcal/mol (27155.9721 without restraints) Performing minimization step: 212. Total energy = 27114.2761 kcal/mol (27099.9392 without restraints) Performing minimization step: 213. Total energy = 27058.6452 kcal/mol (27044.3618 without restraints) Performing minimization step: 214. Total energy = 27003.4630 kcal/mol (26989.2326 without restraints) Performing minimization step: 215. Total energy = 26948.7229 kcal/mol (26934.5445 without restraints) Performing minimization step: 216. Total energy = 26894.4175 kcal/mol (26880.2903 without restraints) Performing minimization step: 217. Total energy = 26840.5398 kcal/mol (26826.4631 without restraints) Performing minimization step: 218. Total energy = 26787.0831 kcal/mol (26773.0561 without restraints) Performing minimization step: 219. Total energy = 26734.0414 kcal/mol (26720.0635 without restraints) Performing minimization step: 220. Total energy = 26681.4075 kcal/mol (26667.4776 without restraints) Performing minimization step: 221. Total energy = 26629.1749 kcal/mol (26615.2922 without restraints) Performing minimization step: 222. Total energy = 26577.3367 kcal/mol (26563.5007 without restraints) Performing minimization step: 223. Total energy = 26525.8880 kcal/mol (26512.0980 without restraints) Performing minimization step: 224. Total energy = 26474.8223 kcal/mol (26461.0773 without restraints) Performing minimization step: 225. Total energy = 26424.1333 kcal/mol (26410.4329 without restraints) Performing minimization step: 226. Total energy = 26373.8153 kcal/mol (26360.1587 without restraints) Performing minimization step: 227. Total energy = 26323.8625 kcal/mol (26310.2490 without restraints) Performing minimization step: 228. Total energy = 26274.2696 kcal/mol (26260.6986 without restraints) Performing minimization step: 229. Total energy = 26225.0309 kcal/mol (26211.5018 without restraints) Performing minimization step: 230. Total energy = 26176.1413 kcal/mol (26162.6534 without restraints) Performing minimization step: 231. Total energy = 26127.5951 kcal/mol (26114.1478 without restraints) Performing minimization step: 232. Total energy = 26079.3868 kcal/mol (26065.9796 without restraints) Performing minimization step: 233. Total energy = 26031.5122 kcal/mol (26018.1444 without restraints) Performing minimization step: 234. Total energy = 25983.9658 kcal/mol (25970.6369 without restraints) Performing minimization step: 235. Total energy = 25936.7430 kcal/mol (25923.4524 without restraints) Performing minimization step: 236. Total energy = 25889.8387 kcal/mol (25876.5857 without restraints) Performing minimization step: 237. Total energy = 25843.2481 kcal/mol (25830.0323 without restraints) Performing minimization step: 238. Total energy = 25796.9668 kcal/mol (25783.7876 without restraints) Performing minimization step: 239. Total energy = 25750.9897 kcal/mol (25737.8466 without restraints) Performing minimization step: 240. Total energy = 25705.3132 kcal/mol (25692.2057 without restraints) Performing minimization step: 241. Total energy = 25659.9323 kcal/mol (25646.8599 without restraints) Performing minimization step: 242. Total energy = 25614.8432 kcal/mol (25601.8053 without restraints) Performing minimization step: 243. Total energy = 25570.0419 kcal/mol (25557.0382 without restraints) Performing minimization step: 244. Total energy = 25525.5237 kcal/mol (25512.5534 without restraints) Performing minimization step: 245. Total energy = 25481.2846 kcal/mol (25468.3474 without restraints) Performing minimization step: 246. Total energy = 25437.3207 kcal/mol (25424.4162 without restraints) Performing minimization step: 247. Total energy = 25393.6280 kcal/mol (25380.7558 without restraints) Performing minimization step: 248. Total energy = 25350.2033 kcal/mol (25337.3628 without restraints) Performing minimization step: 249. Total energy = 25307.0420 kcal/mol (25294.2329 without restraints) Performing minimization step: 250. Total energy = 25264.1409 kcal/mol (25251.3626 without restraints) Performing minimization step: 251. Total energy = 25221.4958 kcal/mol (25208.7481 without restraints) Performing minimization step: 252. Total energy = 25179.1040 kcal/mol (25166.3863 without restraints) Performing minimization step: 253. Total energy = 25136.9616 kcal/mol (25124.2735 without restraints) Performing minimization step: 254. Total energy = 25095.0648 kcal/mol (25082.4060 without restraints) Performing minimization step: 255. Total energy = 25053.4112 kcal/mol (25040.7814 without restraints) Performing minimization step: 256. Total energy = 25011.9971 kcal/mol (24999.3957 without restraints) Performing minimization step: 257. Total energy = 24970.8188 kcal/mol (24958.2455 without restraints) Performing minimization step: 258. Total energy = 24929.8735 kcal/mol (24917.3279 without restraints) Performing minimization step: 259. Total energy = 24889.1582 kcal/mol (24876.6400 without restraints) Performing minimization step: 260. Total energy = 24848.6696 kcal/mol (24836.1784 without restraints) Performing minimization step: 261. Total energy = 24808.4049 kcal/mol (24795.9405 without restraints) Performing minimization step: 262. Total energy = 24768.3611 kcal/mol (24755.9229 without restraints) Performing minimization step: 263. Total energy = 24728.5346 kcal/mol (24716.1225 without restraints) Performing minimization step: 264. Total energy = 24688.9237 kcal/mol (24676.5373 without restraints) Performing minimization step: 265. Total energy = 24649.5249 kcal/mol (24637.1636 without restraints) Performing minimization step: 266. Total energy = 24610.3357 kcal/mol (24597.9997 without restraints) Performing minimization step: 267. Total energy = 24571.3536 kcal/mol (24559.0422 without restraints) Performing minimization step: 268. Total energy = 24532.5756 kcal/mol (24520.2886 without restraints) Performing minimization step: 269. Total energy = 24493.9993 kcal/mol (24481.7366 without restraints) Performing minimization step: 270. Total energy = 24455.6227 kcal/mol (24443.3837 without restraints) Performing minimization step: 271. Total energy = 24417.4421 kcal/mol (24405.2267 without restraints) Performing minimization step: 272. Total energy = 24379.4560 kcal/mol (24367.2638 without restraints) Performing minimization step: 273. Total energy = 24341.6616 kcal/mol (24329.4923 without restraints) Performing minimization step: 274. Total energy = 24304.0567 kcal/mol (24291.9101 without restraints) Performing minimization step: 275. Total energy = 24266.6392 kcal/mol (24254.5151 without restraints) Performing minimization step: 276. Total energy = 24229.4061 kcal/mol (24217.3041 without restraints) Performing minimization step: 277. Total energy = 24192.3555 kcal/mol (24180.2754 without restraints) Performing minimization step: 278. Total energy = 24155.4858 kcal/mol (24143.4271 without restraints) Performing minimization step: 279. Total energy = 24118.7939 kcal/mol (24106.7568 without restraints) Performing minimization step: 280. Total energy = 24082.2784 kcal/mol (24070.2624 without restraints) Performing minimization step: 281. Total energy = 24045.9362 kcal/mol (24033.9411 without restraints) Performing minimization step: 282. Total energy = 24009.7664 kcal/mol (23997.7918 without restraints) Performing minimization step: 283. Total energy = 23973.7661 kcal/mol (23961.8121 without restraints) Performing minimization step: 284. Total energy = 23937.9342 kcal/mol (23926.0003 without restraints) Performing minimization step: 285. Total energy = 23902.2680 kcal/mol (23890.3541 without restraints) Performing minimization step: 286. Total energy = 23866.7659 kcal/mol (23854.8717 without restraints) Performing minimization step: 287. Total energy = 23831.4262 kcal/mol (23819.5516 without restraints) Performing minimization step: 288. Total energy = 23796.2471 kcal/mol (23784.3918 without restraints) Performing minimization step: 289. Total energy = 23761.2264 kcal/mol (23749.3902 without restraints) Performing minimization step: 290. Total energy = 23726.3626 kcal/mol (23714.5452 without restraints) Performing minimization step: 291. Total energy = 23691.6537 kcal/mol (23679.8551 without restraints) Performing minimization step: 292. Total energy = 23657.0985 kcal/mol (23645.3185 without restraints) Performing minimization step: 293. Total energy = 23622.6947 kcal/mol (23610.9330 without restraints) Performing minimization step: 294. Total energy = 23588.4407 kcal/mol (23576.6969 without restraints) Performing minimization step: 295. Total energy = 23554.3354 kcal/mol (23542.6096 without restraints) Performing minimization step: 296. Total energy = 23520.3762 kcal/mol (23508.6681 without restraints) Performing minimization step: 297. Total energy = 23486.5625 kcal/mol (23474.8720 without restraints) Performing minimization step: 298. Total energy = 23452.8925 kcal/mol (23441.2193 without restraints) Performing minimization step: 299. Total energy = 23419.3649 kcal/mol (23407.7089 without restraints) Performing minimization step: 300. Total energy = 23385.9775 kcal/mol (23374.3385 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 301. Total energy = 23352.7295 kcal/mol (23341.1073 without restraints) Performing minimization step: 302. Total energy = 23319.6189 kcal/mol (23308.0135 without restraints) Performing minimization step: 303. Total energy = 23286.6447 kcal/mol (23275.0557 without restraints) Performing minimization step: 304. Total energy = 23253.8051 kcal/mol (23242.2325 without restraints) Performing minimization step: 305. Total energy = 23221.0991 kcal/mol (23209.5427 without restraints) Performing minimization step: 306. Total energy = 23188.5256 kcal/mol (23176.9853 without restraints) Performing minimization step: 307. Total energy = 23156.0832 kcal/mol (23144.5588 without restraints) Performing minimization step: 308. Total energy = 23123.7698 kcal/mol (23112.2611 without restraints) Performing minimization step: 309. Total energy = 23091.5845 kcal/mol (23080.0913 without restraints) Performing minimization step: 310. Total energy = 23059.5261 kcal/mol (23048.0482 without restraints) Performing minimization step: 311. Total energy = 23027.5932 kcal/mol (23016.1307 without restraints) Performing minimization step: 312. Total energy = 22995.7840 kcal/mol (22984.3367 without restraints) Performing minimization step: 313. Total energy = 22964.0986 kcal/mol (22952.6662 without restraints) Performing minimization step: 314. Total energy = 22932.5353 kcal/mol (22921.1178 without restraints) Performing minimization step: 315. Total energy = 22901.0931 kcal/mol (22889.6903 without restraints) Performing minimization step: 316. Total energy = 22869.7706 kcal/mol (22858.3825 without restraints) Performing minimization step: 317. Total energy = 22838.5671 kcal/mol (22827.1934 without restraints) Performing minimization step: 318. Total energy = 22807.4811 kcal/mol (22796.1218 without restraints) Performing minimization step: 319. Total energy = 22776.5113 kcal/mol (22765.1661 without restraints) Performing minimization step: 320. Total energy = 22745.6561 kcal/mol (22734.3250 without restraints) Performing minimization step: 321. Total energy = 22714.9156 kcal/mol (22703.5985 without restraints) Performing minimization step: 322. Total energy = 22684.2887 kcal/mol (22672.9854 without restraints) Performing minimization step: 323. Total energy = 22653.7737 kcal/mol (22642.4842 without restraints) Performing minimization step: 324. Total energy = 22623.3695 kcal/mol (22612.0936 without restraints) Performing minimization step: 325. Total energy = 22593.0760 kcal/mol (22581.8136 without restraints) Performing minimization step: 326. Total energy = 22562.8919 kcal/mol (22551.6429 without restraints) Performing minimization step: 327. Total energy = 22532.8162 kcal/mol (22521.5804 without restraints) Performing minimization step: 328. Total energy = 22502.8478 kcal/mol (22491.6254 without restraints) Performing minimization step: 329. Total energy = 22472.9860 kcal/mol (22461.7764 without restraints) Performing minimization step: 330. Total energy = 22443.2297 kcal/mol (22432.0331 without restraints) Performing minimization step: 331. Total energy = 22413.5778 kcal/mol (22402.3939 without restraints) Performing minimization step: 332. Total energy = 22384.0295 kcal/mol (22372.8584 without restraints) Performing minimization step: 333. Total energy = 22354.5835 kcal/mol (22343.4251 without restraints) Performing minimization step: 334. Total energy = 22325.2399 kcal/mol (22314.0940 without restraints) Performing minimization step: 335. Total energy = 22295.9976 kcal/mol (22284.8643 without restraints) Performing minimization step: 336. Total energy = 22266.8558 kcal/mol (22255.7344 without restraints) Performing minimization step: 337. Total energy = 22237.8131 kcal/mol (22226.7043 without restraints) Performing minimization step: 338. Total energy = 22208.8689 kcal/mol (22197.7723 without restraints) Performing minimization step: 339. Total energy = 22180.0225 kcal/mol (22168.9378 without restraints) Performing minimization step: 340. Total energy = 22151.2726 kcal/mol (22140.1998 without restraints) Performing minimization step: 341. Total energy = 22122.6197 kcal/mol (22111.5590 without restraints) Performing minimization step: 342. Total energy = 22094.0625 kcal/mol (22083.0136 without restraints) Performing minimization step: 343. Total energy = 22065.6000 kcal/mol (22054.5626 without restraints) Performing minimization step: 344. Total energy = 22037.2317 kcal/mol (22026.2060 without restraints) Performing minimization step: 345. Total energy = 22008.9563 kcal/mol (21997.9421 without restraints) Performing minimization step: 346. Total energy = 21980.7740 kcal/mol (21969.7713 without restraints) Performing minimization step: 347. Total energy = 21952.6834 kcal/mol (21941.6921 without restraints) Performing minimization step: 348. Total energy = 21924.6840 kcal/mol (21913.7040 without restraints) Performing minimization step: 349. Total energy = 21896.7751 kcal/mol (21885.8063 without restraints) Performing minimization step: 350. Total energy = 21868.9562 kcal/mol (21857.9986 without restraints) Performing minimization step: 351. Total energy = 21841.2264 kcal/mol (21830.2798 without restraints) Performing minimization step: 352. Total energy = 21813.5852 kcal/mol (21802.6496 without restraints) Performing minimization step: 353. Total energy = 21786.0319 kcal/mol (21775.1071 without restraints) Performing minimization step: 354. Total energy = 21758.5655 kcal/mol (21747.6516 without restraints) Performing minimization step: 355. Total energy = 21731.1859 kcal/mol (21720.2828 without restraints) Performing minimization step: 356. Total energy = 21703.8919 kcal/mol (21692.9995 without restraints) Performing minimization step: 357. Total energy = 21676.6837 kcal/mol (21665.8018 without restraints) Performing minimization step: 358. Total energy = 21649.5600 kcal/mol (21638.6886 without restraints) Performing minimization step: 359. Total energy = 21622.5204 kcal/mol (21611.6597 without restraints) Performing minimization step: 360. Total energy = 21595.5645 kcal/mol (21584.7144 without restraints) Performing minimization step: 361. Total energy = 21568.6918 kcal/mol (21557.8517 without restraints) Performing minimization step: 362. Total energy = 21541.9009 kcal/mol (21531.0709 without restraints) Performing minimization step: 363. Total energy = 21515.1916 kcal/mol (21504.3721 without restraints) Performing minimization step: 364. Total energy = 21488.5644 kcal/mol (21477.7550 without restraints) Performing minimization step: 365. Total energy = 21462.0175 kcal/mol (21451.2181 without restraints) Performing minimization step: 366. Total energy = 21435.5512 kcal/mol (21424.7619 without restraints) Performing minimization step: 367. Total energy = 21409.1644 kcal/mol (21398.3850 without restraints) Performing minimization step: 368. Total energy = 21382.8567 kcal/mol (21372.0871 without restraints) Performing minimization step: 369. Total energy = 21356.6278 kcal/mol (21345.8684 without restraints) Performing minimization step: 370. Total energy = 21330.4770 kcal/mol (21319.7271 without restraints) Performing minimization step: 371. Total energy = 21304.4040 kcal/mol (21293.6639 without restraints) Performing minimization step: 372. Total energy = 21278.4076 kcal/mol (21267.6771 without restraints) Performing minimization step: 373. Total energy = 21252.4881 kcal/mol (21241.7672 without restraints) Performing minimization step: 374. Total energy = 21226.6456 kcal/mol (21215.9345 without restraints) Performing minimization step: 375. Total energy = 21200.8781 kcal/mol (21190.1763 without restraints) Performing minimization step: 376. Total energy = 21175.1861 kcal/mol (21164.4939 without restraints) Performing minimization step: 377. Total energy = 21149.5685 kcal/mol (21138.8855 without restraints) Performing minimization step: 378. Total energy = 21124.0249 kcal/mol (21113.3513 without restraints) Performing minimization step: 379. Total energy = 21098.5553 kcal/mol (21087.8909 without restraints) Performing minimization step: 380. Total energy = 21073.1591 kcal/mol (21062.5041 without restraints) Performing minimization step: 381. Total energy = 21047.8358 kcal/mol (21037.1899 without restraints) Performing minimization step: 382. Total energy = 21022.5845 kcal/mol (21011.9475 without restraints) Performing minimization step: 383. Total energy = 20997.4056 kcal/mol (20986.7779 without restraints) Performing minimization step: 384. Total energy = 20972.2982 kcal/mol (20961.6795 without restraints) Performing minimization step: 385. Total energy = 20947.2618 kcal/mol (20936.6521 without restraints) Performing minimization step: 386. Total energy = 20922.2966 kcal/mol (20911.6959 without restraints) Performing minimization step: 387. Total energy = 20897.4021 kcal/mol (20886.8103 without restraints) Performing minimization step: 388. Total energy = 20872.5774 kcal/mol (20861.9944 without restraints) Performing minimization step: 389. Total energy = 20847.8221 kcal/mol (20837.2478 without restraints) Performing minimization step: 390. Total energy = 20823.1357 kcal/mol (20812.5702 without restraints) Performing minimization step: 391. Total energy = 20798.5186 kcal/mol (20787.9619 without restraints) Performing minimization step: 392. Total energy = 20773.9697 kcal/mol (20763.4216 without restraints) Performing minimization step: 393. Total energy = 20749.4893 kcal/mol (20738.9498 without restraints) Performing minimization step: 394. Total energy = 20725.0761 kcal/mol (20714.5452 without restraints) Performing minimization step: 395. Total energy = 20700.7306 kcal/mol (20690.2083 without restraints) Performing minimization step: 396. Total energy = 20676.4519 kcal/mol (20665.9380 without restraints) Performing minimization step: 397. Total energy = 20652.2393 kcal/mol (20641.7339 without restraints) Performing minimization step: 398. Total energy = 20628.0927 kcal/mol (20617.5957 without restraints) Performing minimization step: 399. Total energy = 20604.0126 kcal/mol (20593.5240 without restraints) Performing minimization step: 400. Total energy = 20579.9981 kcal/mol (20569.5177 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 401. Total energy = 20556.0485 kcal/mol (20545.5763 without restraints) Performing minimization step: 402. Total energy = 20532.1639 kcal/mol (20521.7001 without restraints) Performing minimization step: 403. Total energy = 20508.3444 kcal/mol (20497.8888 without restraints) Performing minimization step: 404. Total energy = 20484.5887 kcal/mol (20474.1413 without restraints) Performing minimization step: 405. Total energy = 20460.8967 kcal/mol (20450.4574 without restraints) Performing minimization step: 406. Total energy = 20437.2686 kcal/mol (20426.8375 without restraints) Performing minimization step: 407. Total energy = 20413.7035 kcal/mol (20403.2803 without restraints) Performing minimization step: 408. Total energy = 20390.2016 kcal/mol (20379.7865 without restraints) Performing minimization step: 409. Total energy = 20366.7618 kcal/mol (20356.3547 without restraints) Performing minimization step: 410. Total energy = 20343.3840 kcal/mol (20332.9848 without restraints) Performing minimization step: 411. Total energy = 20320.0683 kcal/mol (20309.6771 without restraints) Performing minimization step: 412. Total energy = 20296.8141 kcal/mol (20286.4307 without restraints) Performing minimization step: 413. Total energy = 20273.6209 kcal/mol (20263.2454 without restraints) Performing minimization step: 414. Total energy = 20250.4898 kcal/mol (20240.1222 without restraints) Performing minimization step: 415. Total energy = 20227.4182 kcal/mol (20217.0584 without restraints) Performing minimization step: 416. Total energy = 20204.4076 kcal/mol (20194.0554 without restraints) Performing minimization step: 417. Total energy = 20181.4573 kcal/mol (20171.1128 without restraints) Performing minimization step: 418. Total energy = 20158.5661 kcal/mol (20148.2293 without restraints) Performing minimization step: 419. Total energy = 20135.7350 kcal/mol (20125.4058 without restraints) Performing minimization step: 420. Total energy = 20112.9629 kcal/mol (20102.6414 without restraints) Performing minimization step: 421. Total energy = 20090.2504 kcal/mol (20079.9364 without restraints) Performing minimization step: 422. Total energy = 20067.5963 kcal/mol (20057.2899 without restraints) Performing minimization step: 423. Total energy = 20045.0009 kcal/mol (20034.7020 without restraints) Performing minimization step: 424. Total energy = 20022.4634 kcal/mol (20012.1720 without restraints) Performing minimization step: 425. Total energy = 19999.9843 kcal/mol (19989.7003 without restraints) Performing minimization step: 426. Total energy = 19977.5623 kcal/mol (19967.2858 without restraints) Performing minimization step: 427. Total energy = 19955.1978 kcal/mol (19944.9287 without restraints) Performing minimization step: 428. Total energy = 19932.8907 kcal/mol (19922.6289 without restraints) Performing minimization step: 429. Total energy = 19910.6403 kcal/mol (19900.3859 without restraints) Performing minimization step: 430. Total energy = 19888.4462 kcal/mol (19878.1991 without restraints) Performing minimization step: 431. Total energy = 19866.3091 kcal/mol (19856.0693 without restraints) Performing minimization step: 432. Total energy = 19844.2283 kcal/mol (19833.9960 without restraints) Performing minimization step: 433. Total energy = 19822.2026 kcal/mol (19811.9772 without restraints) Performing minimization step: 434. Total energy = 19800.2333 kcal/mol (19790.0151 without restraints) Performing minimization step: 435. Total energy = 19778.3191 kcal/mol (19768.1080 without restraints) Performing minimization step: 436. Total energy = 19756.4606 kcal/mol (19746.2568 without restraints) Performing minimization step: 437. Total energy = 19734.6566 kcal/mol (19724.4598 without restraints) Performing minimization step: 438. Total energy = 19712.9074 kcal/mol (19702.7178 without restraints) Performing minimization step: 439. Total energy = 19691.2130 kcal/mol (19681.0306 without restraints) Performing minimization step: 440. Total energy = 19669.5731 kcal/mol (19659.3976 without restraints) Performing minimization step: 441. Total energy = 19647.9867 kcal/mol (19637.8182 without restraints) Performing minimization step: 442. Total energy = 19626.4541 kcal/mol (19616.2926 without restraints) Performing minimization step: 443. Total energy = 19604.9752 kcal/mol (19594.8204 without restraints) Performing minimization step: 444. Total energy = 19583.5498 kcal/mol (19573.4022 without restraints) Performing minimization step: 445. Total energy = 19562.1775 kcal/mol (19552.0368 without restraints) Performing minimization step: 446. Total energy = 19540.8589 kcal/mol (19530.7251 without restraints) Performing minimization step: 447. Total energy = 19519.5922 kcal/mol (19509.4653 without restraints) Performing minimization step: 448. Total energy = 19498.3782 kcal/mol (19488.2581 without restraints) Performing minimization step: 449. Total energy = 19477.2164 kcal/mol (19467.1031 without restraints) Performing minimization step: 450. Total energy = 19456.1070 kcal/mol (19446.0005 without restraints) Performing minimization step: 451. Total energy = 19435.0492 kcal/mol (19424.9494 without restraints) Performing minimization step: 452. Total energy = 19414.0431 kcal/mol (19403.9501 without restraints) Performing minimization step: 453. Total energy = 19393.0887 kcal/mol (19383.0024 without restraints) Performing minimization step: 454. Total energy = 19372.1851 kcal/mol (19362.1055 without restraints) Performing minimization step: 455. Total energy = 19351.3327 kcal/mol (19341.2598 without restraints) Performing minimization step: 456. Total energy = 19330.5314 kcal/mol (19320.4652 without restraints) Performing minimization step: 457. Total energy = 19309.7817 kcal/mol (19299.7222 without restraints) Performing minimization step: 458. Total energy = 19289.0819 kcal/mol (19279.0289 without restraints) Performing minimization step: 459. Total energy = 19268.4318 kcal/mol (19258.3855 without restraints) Performing minimization step: 460. Total energy = 19247.8326 kcal/mol (19237.7927 without restraints) Performing minimization step: 461. Total energy = 19227.2829 kcal/mol (19217.2497 without restraints) Performing minimization step: 462. Total energy = 19206.7826 kcal/mol (19196.7557 without restraints) Performing minimization step: 463. Total energy = 19186.3319 kcal/mol (19176.3116 without restraints) Performing minimization step: 464. Total energy = 19165.9308 kcal/mol (19155.9169 without restraints) Performing minimization step: 465. Total energy = 19145.5782 kcal/mol (19135.5708 without restraints) Performing minimization step: 466. Total energy = 19125.2753 kcal/mol (19115.2744 without restraints) Performing minimization step: 467. Total energy = 19105.0213 kcal/mol (19095.0267 without restraints) Performing minimization step: 468. Total energy = 19084.8149 kcal/mol (19074.8267 without restraints) Performing minimization step: 469. Total energy = 19064.6578 kcal/mol (19054.6761 without restraints) Performing minimization step: 470. Total energy = 19044.5492 kcal/mol (19034.5738 without restraints) Performing minimization step: 471. Total energy = 19024.4886 kcal/mol (19014.5195 without restraints) Performing minimization step: 472. Total energy = 19004.4758 kcal/mol (18994.5131 without restraints) Performing minimization step: 473. Total energy = 18984.5108 kcal/mol (18974.5544 without restraints) Performing minimization step: 474. Total energy = 18964.5937 kcal/mol (18954.6435 without restraints) Performing minimization step: 475. Total energy = 18944.7241 kcal/mol (18934.7802 without restraints) Performing minimization step: 476. Total energy = 18924.9013 kcal/mol (18914.9636 without restraints) Performing minimization step: 477. Total energy = 18905.1256 kcal/mol (18895.1941 without restraints) Performing minimization step: 478. Total energy = 18885.3970 kcal/mol (18875.4717 without restraints) Performing minimization step: 479. Total energy = 18865.7150 kcal/mol (18855.7959 without restraints) Performing minimization step: 480. Total energy = 18846.0799 kcal/mol (18836.1668 without restraints) Performing minimization step: 481. Total energy = 18826.4907 kcal/mol (18816.5839 without restraints) Performing minimization step: 482. Total energy = 18806.9479 kcal/mol (18797.0472 without restraints) Performing minimization step: 483. Total energy = 18787.4512 kcal/mol (18777.5567 without restraints) Performing minimization step: 484. Total energy = 18768.0003 kcal/mol (18758.1118 without restraints) Performing minimization step: 485. Total energy = 18748.5954 kcal/mol (18738.7130 without restraints) Performing minimization step: 486. Total energy = 18729.2360 kcal/mol (18719.3596 without restraints) Performing minimization step: 487. Total energy = 18709.9218 kcal/mol (18700.0514 without restraints) Performing minimization step: 488. Total energy = 18690.6532 kcal/mol (18680.7889 without restraints) Performing minimization step: 489. Total energy = 18671.4295 kcal/mol (18661.5712 without restraints) Performing minimization step: 490. Total energy = 18652.2510 kcal/mol (18642.3987 without restraints) Performing minimization step: 491. Total energy = 18633.1178 kcal/mol (18623.2714 without restraints) Performing minimization step: 492. Total energy = 18614.0284 kcal/mol (18604.1880 without restraints) Performing minimization step: 493. Total energy = 18594.9837 kcal/mol (18585.1492 without restraints) Performing minimization step: 494. Total energy = 18575.9837 kcal/mol (18566.1551 without restraints) Performing minimization step: 495. Total energy = 18557.0279 kcal/mol (18547.2053 without restraints) Performing minimization step: 496. Total energy = 18538.1161 kcal/mol (18528.2993 without restraints) Performing minimization step: 497. Total energy = 18519.2482 kcal/mol (18509.4373 without restraints) Performing minimization step: 498. Total energy = 18500.4243 kcal/mol (18490.6192 without restraints) Performing minimization step: 499. Total energy = 18481.6440 kcal/mol (18471.8446 without restraints) Performing minimization step: 500. Total energy = 18462.9072 kcal/mol (18453.1137 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 501. Total energy = 18444.2140 kcal/mol (18434.4264 without restraints) Performing minimization step: 502. Total energy = 18425.5639 kcal/mol (18415.7820 without restraints) Performing minimization step: 503. Total energy = 18406.9568 kcal/mol (18397.1807 without restraints) Performing minimization step: 504. Total energy = 18388.3932 kcal/mol (18378.6228 without restraints) Performing minimization step: 505. Total energy = 18369.8721 kcal/mol (18360.1075 without restraints) Performing minimization step: 506. Total energy = 18351.3931 kcal/mol (18341.6342 without restraints) Performing minimization step: 507. Total energy = 18332.9573 kcal/mol (18323.2041 without restraints) Performing minimization step: 508. Total energy = 18314.5637 kcal/mol (18304.8162 without restraints) Performing minimization step: 509. Total energy = 18296.2122 kcal/mol (18286.4703 without restraints) Performing minimization step: 510. Total energy = 18277.9025 kcal/mol (18268.1663 without restraints) Performing minimization step: 511. Total energy = 18259.6351 kcal/mol (18249.9046 without restraints) Performing minimization step: 512. Total energy = 18241.4094 kcal/mol (18231.6845 without restraints) Performing minimization step: 513. Total energy = 18223.2258 kcal/mol (18213.5066 without restraints) Performing minimization step: 514. Total energy = 18205.0837 kcal/mol (18195.3700 without restraints) Performing minimization step: 515. Total energy = 18186.9832 kcal/mol (18177.2750 without restraints) Performing minimization step: 516. Total energy = 18168.9237 kcal/mol (18159.2213 without restraints) Performing minimization step: 517. Total energy = 18150.9058 kcal/mol (18141.2088 without restraints) Performing minimization step: 518. Total energy = 18132.9286 kcal/mol (18123.2371 without restraints) Performing minimization step: 519. Total energy = 18114.9926 kcal/mol (18105.3066 without restraints) Performing minimization step: 520. Total energy = 18097.0972 kcal/mol (18087.4167 without restraints) Performing minimization step: 521. Total energy = 18079.2420 kcal/mol (18069.5670 without restraints) Performing minimization step: 522. Total energy = 18061.4278 kcal/mol (18051.7583 without restraints) Performing minimization step: 523. Total energy = 18043.6538 kcal/mol (18033.9898 without restraints) Performing minimization step: 524. Total energy = 18025.9203 kcal/mol (18016.2618 without restraints) Performing minimization step: 525. Total energy = 18008.2269 kcal/mol (17998.5737 without restraints) Performing minimization step: 526. Total energy = 17990.5734 kcal/mol (17980.9257 without restraints) Performing minimization step: 527. Total energy = 17972.9600 kcal/mol (17963.3178 without restraints) Performing minimization step: 528. Total energy = 17955.3862 kcal/mol (17945.7493 without restraints) Performing minimization step: 529. Total energy = 17937.8525 kcal/mol (17928.2210 without restraints) Performing minimization step: 530. Total energy = 17920.3577 kcal/mol (17910.7315 without restraints) Performing minimization step: 531. Total energy = 17902.9027 kcal/mol (17893.2819 without restraints) Performing minimization step: 532. Total energy = 17885.4870 kcal/mol (17875.8716 without restraints) Performing minimization step: 533. Total energy = 17868.1107 kcal/mol (17858.5006 without restraints) Performing minimization step: 534. Total energy = 17850.7735 kcal/mol (17841.1687 without restraints) Performing minimization step: 535. Total energy = 17833.4753 kcal/mol (17823.8760 without restraints) Performing minimization step: 536. Total energy = 17816.2159 kcal/mol (17806.6216 without restraints) Performing minimization step: 537. Total energy = 17798.9951 kcal/mol (17789.4061 without restraints) Performing minimization step: 538. Total energy = 17781.8131 kcal/mol (17772.2294 without restraints) Performing minimization step: 539. Total energy = 17764.6694 kcal/mol (17755.0909 without restraints) Performing minimization step: 540. Total energy = 17747.5639 kcal/mol (17737.9907 without restraints) Performing minimization step: 541. Total energy = 17730.4966 kcal/mol (17720.9285 without restraints) Performing minimization step: 542. Total energy = 17713.4673 kcal/mol (17703.9045 without restraints) Performing minimization step: 543. Total energy = 17696.4762 kcal/mol (17686.9186 without restraints) Performing minimization step: 544. Total energy = 17679.5235 kcal/mol (17669.9710 without restraints) Performing minimization step: 545. Total energy = 17662.6075 kcal/mol (17653.0603 without restraints) Performing minimization step: 546. Total energy = 17645.7299 kcal/mol (17636.1878 without restraints) Performing minimization step: 547. Total energy = 17628.8898 kcal/mol (17619.3528 without restraints) Performing minimization step: 548. Total energy = 17612.0873 kcal/mol (17602.5557 without restraints) Performing minimization step: 549. Total energy = 17595.3226 kcal/mol (17585.7960 without restraints) Performing minimization step: 550. Total energy = 17578.5948 kcal/mol (17569.0731 without restraints) Performing minimization step: 551. Total energy = 17561.9037 kcal/mol (17552.3872 without restraints) Performing minimization step: 552. Total energy = 17545.2500 kcal/mol (17535.7385 without restraints) Performing minimization step: 553. Total energy = 17528.6329 kcal/mol (17519.1265 without restraints) Performing minimization step: 554. Total energy = 17512.0527 kcal/mol (17502.5514 without restraints) Performing minimization step: 555. Total energy = 17495.5092 kcal/mol (17486.0129 without restraints) Performing minimization step: 556. Total energy = 17479.0019 kcal/mol (17469.5106 without restraints) Performing minimization step: 557. Total energy = 17462.5313 kcal/mol (17453.0452 without restraints) Performing minimization step: 558. Total energy = 17446.0970 kcal/mol (17436.6158 without restraints) Performing minimization step: 559. Total energy = 17429.6992 kcal/mol (17420.2230 without restraints) Performing minimization step: 560. Total energy = 17413.3371 kcal/mol (17403.8658 without restraints) Performing minimization step: 561. Total energy = 17397.0110 kcal/mol (17387.5449 without restraints) Performing minimization step: 562. Total energy = 17380.7209 kcal/mol (17371.2596 without restraints) Performing minimization step: 563. Total energy = 17364.4666 kcal/mol (17355.0102 without restraints) Performing minimization step: 564. Total energy = 17348.2482 kcal/mol (17338.7967 without restraints) Performing minimization step: 565. Total energy = 17332.0651 kcal/mol (17322.6186 without restraints) Performing minimization step: 566. Total energy = 17315.9173 kcal/mol (17306.4757 without restraints) Performing minimization step: 567. Total energy = 17299.8045 kcal/mol (17290.3678 without restraints) Performing minimization step: 568. Total energy = 17283.7269 kcal/mol (17274.2951 without restraints) Performing minimization step: 569. Total energy = 17267.6856 kcal/mol (17258.2588 without restraints) Performing minimization step: 570. Total energy = 17251.6793 kcal/mol (17242.2573 without restraints) Performing minimization step: 571. Total energy = 17235.7076 kcal/mol (17226.2903 without restraints) Performing minimization step: 572. Total energy = 17219.7712 kcal/mol (17210.3588 without restraints) Performing minimization step: 573. Total energy = 17203.8686 kcal/mol (17194.4611 without restraints) Performing minimization step: 574. Total energy = 17188.0012 kcal/mol (17178.5985 without restraints) Performing minimization step: 575. Total energy = 17172.1681 kcal/mol (17162.7702 without restraints) Performing minimization step: 576. Total energy = 17156.3696 kcal/mol (17146.9763 without restraints) Performing minimization step: 577. Total energy = 17140.6052 kcal/mol (17131.2168 without restraints) Performing minimization step: 578. Total energy = 17124.8753 kcal/mol (17115.4917 without restraints) Performing minimization step: 579. Total energy = 17109.1796 kcal/mol (17099.8008 without restraints) Performing minimization step: 580. Total energy = 17093.5176 kcal/mol (17084.1435 without restraints) Performing minimization step: 581. Total energy = 17077.8901 kcal/mol (17068.5208 without restraints) Performing minimization step: 582. Total energy = 17062.2960 kcal/mol (17052.9315 without restraints) Performing minimization step: 583. Total energy = 17046.7360 kcal/mol (17037.3762 without restraints) Performing minimization step: 584. Total energy = 17031.2096 kcal/mol (17021.8545 without restraints) Performing minimization step: 585. Total energy = 17015.7166 kcal/mol (17006.3660 without restraints) Performing minimization step: 586. Total energy = 17000.2573 kcal/mol (16990.9116 without restraints) Performing minimization step: 587. Total energy = 16984.8313 kcal/mol (16975.4902 without restraints) Performing minimization step: 588. Total energy = 16969.4385 kcal/mol (16960.1021 without restraints) Performing minimization step: 589. Total energy = 16954.0787 kcal/mol (16944.7469 without restraints) Performing minimization step: 590. Total energy = 16938.7522 kcal/mol (16929.4250 without restraints) Performing minimization step: 591. Total energy = 16923.4590 kcal/mol (16914.1365 without restraints) Performing minimization step: 592. Total energy = 16908.1977 kcal/mol (16898.8798 without restraints) Performing minimization step: 593. Total energy = 16892.9693 kcal/mol (16883.6560 without restraints) Performing minimization step: 594. Total energy = 16877.7737 kcal/mol (16868.4651 without restraints) Performing minimization step: 595. Total energy = 16862.6112 kcal/mol (16853.3072 without restraints) Performing minimization step: 596. Total energy = 16847.4812 kcal/mol (16838.1818 without restraints) Performing minimization step: 597. Total energy = 16832.3842 kcal/mol (16823.0893 without restraints) Performing minimization step: 598. Total energy = 16817.3187 kcal/mol (16808.0284 without restraints) Performing minimization step: 599. Total energy = 16802.2857 kcal/mol (16792.9999 without restraints) Performing minimization step: 600. Total energy = 16787.2840 kcal/mol (16778.0026 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 601. Total energy = 16772.3148 kcal/mol (16763.0381 without restraints) Performing minimization step: 602. Total energy = 16757.3779 kcal/mol (16748.1057 without restraints) Performing minimization step: 603. Total energy = 16742.4730 kcal/mol (16733.2053 without restraints) Performing minimization step: 604. Total energy = 16727.5993 kcal/mol (16718.3360 without restraints) Performing minimization step: 605. Total energy = 16712.7571 kcal/mol (16703.4983 without restraints) Performing minimization step: 606. Total energy = 16697.9469 kcal/mol (16688.6926 without restraints) Performing minimization step: 607. Total energy = 16683.1681 kcal/mol (16673.9184 without restraints) Performing minimization step: 608. Total energy = 16668.4214 kcal/mol (16659.1760 without restraints) Performing minimization step: 609. Total energy = 16653.7053 kcal/mol (16644.4644 without restraints) Performing minimization step: 610. Total energy = 16639.0208 kcal/mol (16629.7845 without restraints) Performing minimization step: 611. Total energy = 16624.3665 kcal/mol (16615.1346 without restraints) Performing minimization step: 612. Total energy = 16609.7435 kcal/mol (16600.5158 without restraints) Performing minimization step: 613. Total energy = 16595.1510 kcal/mol (16585.9278 without restraints) Performing minimization step: 614. Total energy = 16580.5897 kcal/mol (16571.3709 without restraints) Performing minimization step: 615. Total energy = 16566.0593 kcal/mol (16556.8449 without restraints) Performing minimization step: 616. Total energy = 16551.5595 kcal/mol (16542.3494 without restraints) Performing minimization step: 617. Total energy = 16537.0902 kcal/mol (16527.8846 without restraints) Performing minimization step: 618. Total energy = 16522.6516 kcal/mol (16513.4503 without restraints) Performing minimization step: 619. Total energy = 16508.2427 kcal/mol (16499.0458 without restraints) Performing minimization step: 620. Total energy = 16493.8644 kcal/mol (16484.6718 without restraints) Performing minimization step: 621. Total energy = 16479.5163 kcal/mol (16470.3279 without restraints) Performing minimization step: 622. Total energy = 16465.1984 kcal/mol (16456.0145 without restraints) Performing minimization step: 623. Total energy = 16450.9102 kcal/mol (16441.7305 without restraints) Performing minimization step: 624. Total energy = 16436.6524 kcal/mol (16427.4769 without restraints) Performing minimization step: 625. Total energy = 16422.4241 kcal/mol (16413.2530 without restraints) Performing minimization step: 626. Total energy = 16408.2258 kcal/mol (16399.0591 without restraints) Performing minimization step: 627. Total energy = 16394.0573 kcal/mol (16384.8948 without restraints) Performing minimization step: 628. Total energy = 16379.9188 kcal/mol (16370.7605 without restraints) Performing minimization step: 629. Total energy = 16365.8091 kcal/mol (16356.6551 without restraints) Performing minimization step: 630. Total energy = 16351.7291 kcal/mol (16342.5793 without restraints) Performing minimization step: 631. Total energy = 16337.6786 kcal/mol (16328.5332 without restraints) Performing minimization step: 632. Total energy = 16323.6571 kcal/mol (16314.5157 without restraints) Performing minimization step: 633. Total energy = 16309.6650 kcal/mol (16300.5279 without restraints) Performing minimization step: 634. Total energy = 16295.7018 kcal/mol (16286.5687 without restraints) Performing minimization step: 635. Total energy = 16281.7674 kcal/mol (16272.6386 without restraints) Performing minimization step: 636. Total energy = 16267.8620 kcal/mol (16258.7374 without restraints) Performing minimization step: 637. Total energy = 16253.9855 kcal/mol (16244.8651 without restraints) Performing minimization step: 638. Total energy = 16240.1379 kcal/mol (16231.0216 without restraints) Performing minimization step: 639. Total energy = 16226.3187 kcal/mol (16217.2066 without restraints) Performing minimization step: 640. Total energy = 16212.5281 kcal/mol (16203.4202 without restraints) Performing minimization step: 641. Total energy = 16198.7661 kcal/mol (16189.6623 without restraints) Performing minimization step: 642. Total energy = 16185.0324 kcal/mol (16175.9327 without restraints) Performing minimization step: 643. Total energy = 16171.3269 kcal/mol (16162.2314 without restraints) Performing minimization step: 644. Total energy = 16157.6497 kcal/mol (16148.5582 without restraints) Performing minimization step: 645. Total energy = 16144.0005 kcal/mol (16134.9131 without restraints) Performing minimization step: 646. Total energy = 16130.3793 kcal/mol (16121.2961 without restraints) Performing minimization step: 647. Total energy = 16116.7860 kcal/mol (16107.7069 without restraints) Performing minimization step: 648. Total energy = 16103.2209 kcal/mol (16094.1458 without restraints) Performing minimization step: 649. Total energy = 16089.6839 kcal/mol (16080.6129 without restraints) Performing minimization step: 650. Total energy = 16076.1744 kcal/mol (16067.1074 without restraints) Performing minimization step: 651. Total energy = 16062.6925 kcal/mol (16053.6297 without restraints) Performing minimization step: 652. Total energy = 16049.2381 kcal/mol (16040.1794 without restraints) Performing minimization step: 653. Total energy = 16035.8113 kcal/mol (16026.7565 without restraints) Performing minimization step: 654. Total energy = 16022.4118 kcal/mol (16013.3609 without restraints) Performing minimization step: 655. Total energy = 16009.0398 kcal/mol (15999.9930 without restraints) Performing minimization step: 656. Total energy = 15995.6951 kcal/mol (15986.6523 without restraints) Performing minimization step: 657. Total energy = 15982.3778 kcal/mol (15973.3389 without restraints) Performing minimization step: 658. Total energy = 15969.0872 kcal/mol (15960.0524 without restraints) Performing minimization step: 659. Total energy = 15955.8236 kcal/mol (15946.7927 without restraints) Performing minimization step: 660. Total energy = 15942.5864 kcal/mol (15933.5596 without restraints) Performing minimization step: 661. Total energy = 15929.3764 kcal/mol (15920.3534 without restraints) Performing minimization step: 662. Total energy = 15916.1936 kcal/mol (15907.1747 without restraints) Performing minimization step: 663. Total energy = 15903.0374 kcal/mol (15894.0225 without restraints) Performing minimization step: 664. Total energy = 15889.9077 kcal/mol (15880.8966 without restraints) Performing minimization step: 665. Total energy = 15876.8044 kcal/mol (15867.7973 without restraints) Performing minimization step: 666. Total energy = 15863.7279 kcal/mol (15854.7247 without restraints) Performing minimization step: 667. Total energy = 15850.6774 kcal/mol (15841.6781 without restraints) Performing minimization step: 668. Total energy = 15837.6535 kcal/mol (15828.6581 without restraints) Performing minimization step: 669. Total energy = 15824.6556 kcal/mol (15815.6641 without restraints) Performing minimization step: 670. Total energy = 15811.6833 kcal/mol (15802.6955 without restraints) Performing minimization step: 671. Total energy = 15798.7375 kcal/mol (15789.7537 without restraints) Performing minimization step: 672. Total energy = 15785.8177 kcal/mol (15776.8378 without restraints) Performing minimization step: 673. Total energy = 15772.9241 kcal/mol (15763.9480 without restraints) Performing minimization step: 674. Total energy = 15760.0559 kcal/mol (15751.0836 without restraints) Performing minimization step: 675. Total energy = 15747.2136 kcal/mol (15738.2452 without restraints) Performing minimization step: 676. Total energy = 15734.3970 kcal/mol (15725.4325 without restraints) Performing minimization step: 677. Total energy = 15721.6059 kcal/mol (15712.6452 without restraints) Performing minimization step: 678. Total energy = 15708.8402 kcal/mol (15699.8834 without restraints) Performing minimization step: 679. Total energy = 15696.1000 kcal/mol (15687.1469 without restraints) Performing minimization step: 680. Total energy = 15683.3852 kcal/mol (15674.4359 without restraints) Performing minimization step: 681. Total energy = 15670.6958 kcal/mol (15661.7503 without restraints) Performing minimization step: 682. Total energy = 15658.0320 kcal/mol (15649.0904 without restraints) Performing minimization step: 683. Total energy = 15645.3927 kcal/mol (15636.4546 without restraints) Performing minimization step: 684. Total energy = 15632.7783 kcal/mol (15623.8442 without restraints) Performing minimization step: 685. Total energy = 15620.1892 kcal/mol (15611.2589 without restraints) Performing minimization step: 686. Total energy = 15607.6252 kcal/mol (15598.6987 without restraints) Performing minimization step: 687. Total energy = 15595.0866 kcal/mol (15586.1637 without restraints) Performing minimization step: 688. Total energy = 15582.5723 kcal/mol (15573.6532 without restraints) Performing minimization step: 689. Total energy = 15570.0826 kcal/mol (15561.1672 without restraints) Performing minimization step: 690. Total energy = 15557.6180 kcal/mol (15548.7063 without restraints) Performing minimization step: 691. Total energy = 15545.1774 kcal/mol (15536.2693 without restraints) Performing minimization step: 692. Total energy = 15532.7614 kcal/mol (15523.8571 without restraints) Performing minimization step: 693. Total energy = 15520.3697 kcal/mol (15511.4692 without restraints) Performing minimization step: 694. Total energy = 15508.0024 kcal/mol (15499.1057 without restraints) Performing minimization step: 695. Total energy = 15495.6596 kcal/mol (15486.7663 without restraints) Performing minimization step: 696. Total energy = 15483.3410 kcal/mol (15474.4513 without restraints) Performing minimization step: 697. Total energy = 15471.0456 kcal/mol (15462.1598 without restraints) Performing minimization step: 698. Total energy = 15458.7750 kcal/mol (15449.8928 without restraints) Performing minimization step: 699. Total energy = 15446.5280 kcal/mol (15437.6494 without restraints) Performing minimization step: 700. Total energy = 15434.3049 kcal/mol (15425.4300 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 701. Total energy = 15422.1065 kcal/mol (15413.2354 without restraints) Performing minimization step: 702. Total energy = 15409.9312 kcal/mol (15401.0636 without restraints) Performing minimization step: 703. Total energy = 15397.7796 kcal/mol (15388.9154 without restraints) Performing minimization step: 704. Total energy = 15385.6513 kcal/mol (15376.7910 without restraints) Performing minimization step: 705. Total energy = 15373.5469 kcal/mol (15364.6901 without restraints) Performing minimization step: 706. Total energy = 15361.4659 kcal/mol (15352.6127 without restraints) Performing minimization step: 707. Total energy = 15349.4082 kcal/mol (15340.5584 without restraints) Performing minimization step: 708. Total energy = 15337.3740 kcal/mol (15328.5279 without restraints) Performing minimization step: 709. Total energy = 15325.3632 kcal/mol (15316.5207 without restraints) Performing minimization step: 710. Total energy = 15313.3754 kcal/mol (15304.5366 without restraints) Performing minimization step: 711. Total energy = 15301.4107 kcal/mol (15292.5754 without restraints) Performing minimization step: 712. Total energy = 15289.4690 kcal/mol (15280.6372 without restraints) Performing minimization step: 713. Total energy = 15277.5503 kcal/mol (15268.7220 without restraints) Performing minimization step: 714. Total energy = 15265.6546 kcal/mol (15256.8298 without restraints) Performing minimization step: 715. Total energy = 15253.7821 kcal/mol (15244.9610 without restraints) Performing minimization step: 716. Total energy = 15241.9318 kcal/mol (15233.1141 without restraints) Performing minimization step: 717. Total energy = 15230.1043 kcal/mol (15221.2902 without restraints) Performing minimization step: 718. Total energy = 15218.2995 kcal/mol (15209.4887 without restraints) Performing minimization step: 719. Total energy = 15206.5168 kcal/mol (15197.7097 without restraints) Performing minimization step: 720. Total energy = 15194.7573 kcal/mol (15185.9536 without restraints) Performing minimization step: 721. Total energy = 15183.0204 kcal/mol (15174.2202 without restraints) Performing minimization step: 722. Total energy = 15171.3054 kcal/mol (15162.5087 without restraints) Performing minimization step: 723. Total energy = 15159.6127 kcal/mol (15150.8194 without restraints) Performing minimization step: 724. Total energy = 15147.9420 kcal/mol (15139.1522 without restraints) Performing minimization step: 725. Total energy = 15136.2937 kcal/mol (15127.5074 without restraints) Performing minimization step: 726. Total energy = 15124.6675 kcal/mol (15115.8846 without restraints) Performing minimization step: 727. Total energy = 15113.0634 kcal/mol (15104.2840 without restraints) Performing minimization step: 728. Total energy = 15101.4810 kcal/mol (15092.7050 without restraints) Performing minimization step: 729. Total energy = 15089.9206 kcal/mol (15081.1480 without restraints) Performing minimization step: 730. Total energy = 15078.3818 kcal/mol (15069.6125 without restraints) Performing minimization step: 731. Total energy = 15066.8653 kcal/mol (15058.0995 without restraints) Performing minimization step: 732. Total energy = 15055.3696 kcal/mol (15046.6073 without restraints) Performing minimization step: 733. Total energy = 15043.8960 kcal/mol (15035.1371 without restraints) Performing minimization step: 734. Total energy = 15032.4441 kcal/mol (15023.6885 without restraints) Performing minimization step: 735. Total energy = 15021.0137 kcal/mol (15012.2615 without restraints) Performing minimization step: 736. Total energy = 15009.6048 kcal/mol (15000.8562 without restraints) Performing minimization step: 737. Total energy = 14998.2180 kcal/mol (14989.4726 without restraints) Performing minimization step: 738. Total energy = 14986.8517 kcal/mol (14978.1097 without restraints) Performing minimization step: 739. Total energy = 14975.5066 kcal/mol (14966.7678 without restraints) Performing minimization step: 740. Total energy = 14964.1825 kcal/mol (14955.4471 without restraints) Performing minimization step: 741. Total energy = 14952.8797 kcal/mol (14944.1476 without restraints) Performing minimization step: 742. Total energy = 14941.5977 kcal/mol (14932.8690 without restraints) Performing minimization step: 743. Total energy = 14930.3367 kcal/mol (14921.6114 without restraints) Performing minimization step: 744. Total energy = 14919.0972 kcal/mol (14910.3754 without restraints) Performing minimization step: 745. Total energy = 14907.8785 kcal/mol (14899.1599 without restraints) Performing minimization step: 746. Total energy = 14896.6803 kcal/mol (14887.9650 without restraints) Performing minimization step: 747. Total energy = 14885.5033 kcal/mol (14876.7912 without restraints) Performing minimization step: 748. Total energy = 14874.3468 kcal/mol (14865.6380 without restraints) Performing minimization step: 749. Total energy = 14863.2106 kcal/mol (14854.5051 without restraints) Performing minimization step: 750. Total energy = 14852.0947 kcal/mol (14843.3926 without restraints) Performing minimization step: 751. Total energy = 14840.9996 kcal/mol (14832.3007 without restraints) Performing minimization step: 752. Total energy = 14829.9248 kcal/mol (14821.2292 without restraints) Performing minimization step: 753. Total energy = 14818.8705 kcal/mol (14810.1781 without restraints) Performing minimization step: 754. Total energy = 14807.8364 kcal/mol (14799.1473 without restraints) Performing minimization step: 755. Total energy = 14796.8223 kcal/mol (14788.1362 without restraints) Performing minimization step: 756. Total energy = 14785.8284 kcal/mol (14777.1459 without restraints) Performing minimization step: 757. Total energy = 14774.8549 kcal/mol (14766.1755 without restraints) Performing minimization step: 758. Total energy = 14763.9013 kcal/mol (14755.2252 without restraints) Performing minimization step: 759. Total energy = 14752.9678 kcal/mol (14744.2949 without restraints) Performing minimization step: 760. Total energy = 14742.0544 kcal/mol (14733.3846 without restraints) Performing minimization step: 761. Total energy = 14731.1611 kcal/mol (14722.4947 without restraints) Performing minimization step: 762. Total energy = 14720.2872 kcal/mol (14711.6240 without restraints) Performing minimization step: 763. Total energy = 14709.4334 kcal/mol (14700.7733 without restraints) Performing minimization step: 764. Total energy = 14698.5994 kcal/mol (14689.9425 without restraints) Performing minimization step: 765. Total energy = 14687.7846 kcal/mol (14679.1310 without restraints) Performing minimization step: 766. Total energy = 14676.9894 kcal/mol (14668.3389 without restraints) Performing minimization step: 767. Total energy = 14666.2140 kcal/mol (14657.5669 without restraints) Performing minimization step: 768. Total energy = 14655.4577 kcal/mol (14646.8136 without restraints) Performing minimization step: 769. Total energy = 14644.7215 kcal/mol (14636.0807 without restraints) Performing minimization step: 770. Total energy = 14634.0044 kcal/mol (14625.3666 without restraints) Performing minimization step: 771. Total energy = 14623.3059 kcal/mol (14614.6712 without restraints) Performing minimization step: 772. Total energy = 14612.6265 kcal/mol (14603.9950 without restraints) Performing minimization step: 773. Total energy = 14601.9665 kcal/mol (14593.3381 without restraints) Performing minimization step: 774. Total energy = 14591.3257 kcal/mol (14582.7004 without restraints) Performing minimization step: 775. Total energy = 14580.7037 kcal/mol (14572.0817 without restraints) Performing minimization step: 776. Total energy = 14570.1010 kcal/mol (14561.4820 without restraints) Performing minimization step: 777. Total energy = 14559.5171 kcal/mol (14550.9012 without restraints) Performing minimization step: 778. Total energy = 14548.9522 kcal/mol (14540.3394 without restraints) Performing minimization step: 779. Total energy = 14538.4051 kcal/mol (14529.7954 without restraints) Performing minimization step: 780. Total energy = 14527.8774 kcal/mol (14519.2708 without restraints) Performing minimization step: 781. Total energy = 14517.3689 kcal/mol (14508.7654 without restraints) Performing minimization step: 782. Total energy = 14506.8788 kcal/mol (14498.2784 without restraints) Performing minimization step: 783. Total energy = 14496.4076 kcal/mol (14487.8103 without restraints) Performing minimization step: 784. Total energy = 14485.9546 kcal/mol (14477.3604 without restraints) Performing minimization step: 785. Total energy = 14475.5201 kcal/mol (14466.9290 without restraints) Performing minimization step: 786. Total energy = 14465.1034 kcal/mol (14456.5152 without restraints) Performing minimization step: 787. Total energy = 14454.7061 kcal/mol (14446.1212 without restraints) Performing minimization step: 788. Total energy = 14444.3269 kcal/mol (14435.7449 without restraints) Performing minimization step: 789. Total energy = 14433.9656 kcal/mol (14425.3868 without restraints) Performing minimization step: 790. Total energy = 14423.6228 kcal/mol (14415.0469 without restraints) Performing minimization step: 791. Total energy = 14413.2977 kcal/mol (14404.7248 without restraints) Performing minimization step: 792. Total energy = 14402.9909 kcal/mol (14394.4210 without restraints) Performing minimization step: 793. Total energy = 14392.7019 kcal/mol (14384.1349 without restraints) Performing minimization step: 794. Total energy = 14382.4309 kcal/mol (14373.8671 without restraints) Performing minimization step: 795. Total energy = 14372.1787 kcal/mol (14363.6179 without restraints) Performing minimization step: 796. Total energy = 14361.9440 kcal/mol (14353.3860 without restraints) Performing minimization step: 797. Total energy = 14351.7266 kcal/mol (14343.1718 without restraints) Performing minimization step: 798. Total energy = 14341.5277 kcal/mol (14332.9759 without restraints) Performing minimization step: 799. Total energy = 14331.3459 kcal/mol (14322.7969 without restraints) Performing minimization step: 800. Total energy = 14321.1818 kcal/mol (14312.6360 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 801. Total energy = 14311.0359 kcal/mol (14302.4929 without restraints) Performing minimization step: 802. Total energy = 14300.9075 kcal/mol (14292.3676 without restraints) Performing minimization step: 803. Total energy = 14290.7963 kcal/mol (14282.2594 without restraints) Performing minimization step: 804. Total energy = 14280.7024 kcal/mol (14272.1685 without restraints) Performing minimization step: 805. Total energy = 14270.6263 kcal/mol (14262.0953 without restraints) Performing minimization step: 806. Total energy = 14260.5679 kcal/mol (14252.0401 without restraints) Performing minimization step: 807. Total energy = 14250.5265 kcal/mol (14242.0014 without restraints) Performing minimization step: 808. Total energy = 14240.5021 kcal/mol (14231.9799 without restraints) Performing minimization step: 809. Total energy = 14230.4953 kcal/mol (14221.9761 without restraints) Performing minimization step: 810. Total energy = 14220.5055 kcal/mol (14211.9892 without restraints) Performing minimization step: 811. Total energy = 14210.5326 kcal/mol (14202.0192 without restraints) Performing minimization step: 812. Total energy = 14200.5767 kcal/mol (14192.0663 without restraints) Performing minimization step: 813. Total energy = 14190.6381 kcal/mol (14182.1305 without restraints) Performing minimization step: 814. Total energy = 14180.7162 kcal/mol (14172.2118 without restraints) Performing minimization step: 815. Total energy = 14170.8113 kcal/mol (14162.3096 without restraints) Performing minimization step: 816. Total energy = 14160.9235 kcal/mol (14152.4248 without restraints) Performing minimization step: 817. Total energy = 14151.0522 kcal/mol (14142.5564 without restraints) Performing minimization step: 818. Total energy = 14141.1973 kcal/mol (14132.7043 without restraints) Performing minimization step: 819. Total energy = 14131.3593 kcal/mol (14122.8692 without restraints) Performing minimization step: 820. Total energy = 14121.5379 kcal/mol (14113.0505 without restraints) Performing minimization step: 821. Total energy = 14111.7330 kcal/mol (14103.2486 without restraints) Performing minimization step: 822. Total energy = 14101.9452 kcal/mol (14093.4637 without restraints) Performing minimization step: 823. Total energy = 14092.1740 kcal/mol (14083.6953 without restraints) Performing minimization step: 824. Total energy = 14082.4184 kcal/mol (14073.9426 without restraints) Performing minimization step: 825. Total energy = 14072.6798 kcal/mol (14064.2069 without restraints) Performing minimization step: 826. Total energy = 14062.9571 kcal/mol (14054.4870 without restraints) Performing minimization step: 827. Total energy = 14053.2521 kcal/mol (14044.7849 without restraints) Performing minimization step: 828. Total energy = 14043.5627 kcal/mol (14035.0983 without restraints) Performing minimization step: 829. Total energy = 14033.8888 kcal/mol (14025.4272 without restraints) Performing minimization step: 830. Total energy = 14024.2314 kcal/mol (14015.7727 without restraints) Performing minimization step: 831. Total energy = 14014.5903 kcal/mol (14006.1344 without restraints) Performing minimization step: 832. Total energy = 14004.9648 kcal/mol (13996.5117 without restraints) Performing minimization step: 833. Total energy = 13995.3556 kcal/mol (13986.9053 without restraints) Performing minimization step: 834. Total energy = 13985.7623 kcal/mol (13977.3148 without restraints) Performing minimization step: 835. Total energy = 13976.1854 kcal/mol (13967.7409 without restraints) Performing minimization step: 836. Total energy = 13966.6238 kcal/mol (13958.1818 without restraints) Performing minimization step: 837. Total energy = 13957.0782 kcal/mol (13948.6391 without restraints) Performing minimization step: 838. Total energy = 13947.5483 kcal/mol (13939.1121 without restraints) Performing minimization step: 839. Total energy = 13938.0348 kcal/mol (13929.6013 without restraints) Performing minimization step: 840. Total energy = 13928.5363 kcal/mol (13920.1058 without restraints) Performing minimization step: 841. Total energy = 13919.0537 kcal/mol (13910.6258 without restraints) Performing minimization step: 842. Total energy = 13909.5860 kcal/mol (13901.1609 without restraints) Performing minimization step: 843. Total energy = 13900.1345 kcal/mol (13891.7121 without restraints) Performing minimization step: 844. Total energy = 13890.6984 kcal/mol (13882.2786 without restraints) Performing minimization step: 845. Total energy = 13881.2773 kcal/mol (13872.8606 without restraints) Performing minimization step: 846. Total energy = 13871.8724 kcal/mol (13863.4584 without restraints) Performing minimization step: 847. Total energy = 13862.4825 kcal/mol (13854.0710 without restraints) Performing minimization step: 848. Total energy = 13853.1084 kcal/mol (13844.6999 without restraints) Performing minimization step: 849. Total energy = 13843.7493 kcal/mol (13835.3435 without restraints) Performing minimization step: 850. Total energy = 13834.4054 kcal/mol (13826.0023 without restraints) Performing minimization step: 851. Total energy = 13825.0770 kcal/mol (13816.6766 without restraints) Performing minimization step: 852. Total energy = 13815.7636 kcal/mol (13807.3660 without restraints) Performing minimization step: 853. Total energy = 13806.4653 kcal/mol (13798.0704 without restraints) Performing minimization step: 854. Total energy = 13797.1822 kcal/mol (13788.7899 without restraints) Performing minimization step: 855. Total energy = 13787.9141 kcal/mol (13779.5246 without restraints) Performing minimization step: 856. Total energy = 13778.6608 kcal/mol (13770.2740 without restraints) Performing minimization step: 857. Total energy = 13769.4225 kcal/mol (13761.0384 without restraints) Performing minimization step: 858. Total energy = 13760.1990 kcal/mol (13751.8175 without restraints) Performing minimization step: 859. Total energy = 13750.9904 kcal/mol (13742.6117 without restraints) Performing minimization step: 860. Total energy = 13741.7968 kcal/mol (13733.4208 without restraints) Performing minimization step: 861. Total energy = 13732.6180 kcal/mol (13724.2447 without restraints) Performing minimization step: 862. Total energy = 13723.4540 kcal/mol (13715.0836 without restraints) Performing minimization step: 863. Total energy = 13714.3045 kcal/mol (13705.9366 without restraints) Performing minimization step: 864. Total energy = 13705.1695 kcal/mol (13696.8043 without restraints) Performing minimization step: 865. Total energy = 13696.0494 kcal/mol (13687.6869 without restraints) Performing minimization step: 866. Total energy = 13686.9438 kcal/mol (13678.5839 without restraints) Performing minimization step: 867. Total energy = 13677.8528 kcal/mol (13669.4957 without restraints) Performing minimization step: 868. Total energy = 13668.7765 kcal/mol (13660.4219 without restraints) Performing minimization step: 869. Total energy = 13659.7143 kcal/mol (13651.3623 without restraints) Performing minimization step: 870. Total energy = 13650.6668 kcal/mol (13642.3175 without restraints) Performing minimization step: 871. Total energy = 13641.6334 kcal/mol (13633.2869 without restraints) Performing minimization step: 872. Total energy = 13632.6145 kcal/mol (13624.2706 without restraints) Performing minimization step: 873. Total energy = 13623.6098 kcal/mol (13615.2685 without restraints) Performing minimization step: 874. Total energy = 13614.6193 kcal/mol (13606.2806 without restraints) Performing minimization step: 875. Total energy = 13605.6431 kcal/mol (13597.3072 without restraints) Performing minimization step: 876. Total energy = 13596.6808 kcal/mol (13588.3474 without restraints) Performing minimization step: 877. Total energy = 13587.7325 kcal/mol (13579.4017 without restraints) Performing minimization step: 878. Total energy = 13578.7987 kcal/mol (13570.4705 without restraints) Performing minimization step: 879. Total energy = 13569.8788 kcal/mol (13561.5533 without restraints) Performing minimization step: 880. Total energy = 13560.9732 kcal/mol (13552.6502 without restraints) Performing minimization step: 881. Total energy = 13552.0814 kcal/mol (13543.7610 without restraints) Performing minimization step: 882. Total energy = 13543.2033 kcal/mol (13534.8854 without restraints) Performing minimization step: 883. Total energy = 13534.3392 kcal/mol (13526.0241 without restraints) Performing minimization step: 884. Total energy = 13525.4889 kcal/mol (13517.1762 without restraints) Performing minimization step: 885. Total energy = 13516.6524 kcal/mol (13508.3424 without restraints) Performing minimization step: 886. Total energy = 13507.8300 kcal/mol (13499.5226 without restraints) Performing minimization step: 887. Total energy = 13499.0215 kcal/mol (13490.7168 without restraints) Performing minimization step: 888. Total energy = 13490.2258 kcal/mol (13481.9236 without restraints) Performing minimization step: 889. Total energy = 13481.4447 kcal/mol (13473.1451 without restraints) Performing minimization step: 890. Total energy = 13472.6768 kcal/mol (13464.3798 without restraints) Performing minimization step: 891. Total energy = 13463.9226 kcal/mol (13455.6281 without restraints) Performing minimization step: 892. Total energy = 13455.1819 kcal/mol (13446.8900 without restraints) Performing minimization step: 893. Total energy = 13446.4541 kcal/mol (13438.1647 without restraints) Performing minimization step: 894. Total energy = 13437.7402 kcal/mol (13429.4535 without restraints) Performing minimization step: 895. Total energy = 13429.0398 kcal/mol (13420.7556 without restraints) Performing minimization step: 896. Total energy = 13420.3532 kcal/mol (13412.0716 without restraints) Performing minimization step: 897. Total energy = 13411.6799 kcal/mol (13403.4010 without restraints) Performing minimization step: 898. Total energy = 13403.0207 kcal/mol (13394.7443 without restraints) Performing minimization step: 899. Total energy = 13394.3741 kcal/mol (13386.1001 without restraints) Performing minimization step: 900. Total energy = 13385.7410 kcal/mol (13377.4695 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 901. Total energy = 13377.1207 kcal/mol (13368.8518 without restraints) Performing minimization step: 902. Total energy = 13368.5136 kcal/mol (13360.2472 without restraints) Performing minimization step: 903. Total energy = 13359.9193 kcal/mol (13351.6554 without restraints) Performing minimization step: 904. Total energy = 13351.3390 kcal/mol (13343.0777 without restraints) Performing minimization step: 905. Total energy = 13342.7714 kcal/mol (13334.5126 without restraints) Performing minimization step: 906. Total energy = 13334.2166 kcal/mol (13325.9603 without restraints) Performing minimization step: 907. Total energy = 13325.6748 kcal/mol (13317.4210 without restraints) Performing minimization step: 908. Total energy = 13317.1461 kcal/mol (13308.8948 without restraints) Performing minimization step: 909. Total energy = 13308.6294 kcal/mol (13300.3805 without restraints) Performing minimization step: 910. Total energy = 13300.1264 kcal/mol (13291.8801 without restraints) Performing minimization step: 911. Total energy = 13291.6365 kcal/mol (13283.3928 without restraints) Performing minimization step: 912. Total energy = 13283.1594 kcal/mol (13274.9181 without restraints) Performing minimization step: 913. Total energy = 13274.6949 kcal/mol (13266.4561 without restraints) Performing minimization step: 914. Total energy = 13266.2434 kcal/mol (13258.0071 without restraints) Performing minimization step: 915. Total energy = 13257.8046 kcal/mol (13249.5708 without restraints) Performing minimization step: 916. Total energy = 13249.3788 kcal/mol (13241.1475 without restraints) Performing minimization step: 917. Total energy = 13240.9654 kcal/mol (13232.7366 without restraints) Performing minimization step: 918. Total energy = 13232.5645 kcal/mol (13224.3382 without restraints) Performing minimization step: 919. Total energy = 13224.1767 kcal/mol (13215.9529 without restraints) Performing minimization step: 920. Total energy = 13215.8014 kcal/mol (13207.5800 without restraints) Performing minimization step: 921. Total energy = 13207.4386 kcal/mol (13199.2197 without restraints) Performing minimization step: 922. Total energy = 13199.0881 kcal/mol (13190.8717 without restraints) Performing minimization step: 923. Total energy = 13190.7499 kcal/mol (13182.5360 without restraints) Performing minimization step: 924. Total energy = 13182.4243 kcal/mol (13174.2128 without restraints) Performing minimization step: 925. Total energy = 13174.1114 kcal/mol (13165.9024 without restraints) Performing minimization step: 926. Total energy = 13165.8105 kcal/mol (13157.6039 without restraints) Performing minimization step: 927. Total energy = 13157.5215 kcal/mol (13149.3174 without restraints) Performing minimization step: 928. Total energy = 13149.2455 kcal/mol (13141.0438 without restraints) Performing minimization step: 929. Total energy = 13140.9819 kcal/mol (13132.7828 without restraints) Performing minimization step: 930. Total energy = 13132.7302 kcal/mol (13124.5334 without restraints) Performing minimization step: 931. Total energy = 13124.4908 kcal/mol (13116.2964 without restraints) Performing minimization step: 932. Total energy = 13116.2639 kcal/mol (13108.0720 without restraints) Performing minimization step: 933. Total energy = 13108.0490 kcal/mol (13099.8595 without restraints) Performing minimization step: 934. Total energy = 13099.8465 kcal/mol (13091.6595 without restraints) Performing minimization step: 935. Total energy = 13091.6557 kcal/mol (13083.4710 without restraints) Performing minimization step: 936. Total energy = 13083.4771 kcal/mol (13075.2948 without restraints) Performing minimization step: 937. Total energy = 13075.3104 kcal/mol (13067.1306 without restraints) Performing minimization step: 938. Total energy = 13067.1562 kcal/mol (13058.9789 without restraints) Performing minimization step: 939. Total energy = 13059.0133 kcal/mol (13050.8383 without restraints) Performing minimization step: 940. Total energy = 13050.8828 kcal/mol (13042.7105 without restraints) Performing minimization step: 941. Total energy = 13042.7645 kcal/mol (13034.5944 without restraints) Performing minimization step: 942. Total energy = 13034.6577 kcal/mol (13026.4900 without restraints) Performing minimization step: 943. Total energy = 13026.5627 kcal/mol (13018.3974 without restraints) Performing minimization step: 944. Total energy = 13018.4800 kcal/mol (13010.3171 without restraints) Performing minimization step: 945. Total energy = 13010.4085 kcal/mol (13002.2479 without restraints) Performing minimization step: 946. Total energy = 13002.3486 kcal/mol (12994.1905 without restraints) Performing minimization step: 947. Total energy = 12994.3011 kcal/mol (12986.1455 without restraints) Performing minimization step: 948. Total energy = 12986.2651 kcal/mol (12978.1119 without restraints) Performing minimization step: 949. Total energy = 12978.2404 kcal/mol (12970.0895 without restraints) Performing minimization step: 950. Total energy = 12970.2273 kcal/mol (12962.0786 without restraints) Performing minimization step: 951. Total energy = 12962.2262 kcal/mol (12954.0800 without restraints) Performing minimization step: 952. Total energy = 12954.2364 kcal/mol (12946.0925 without restraints) Performing minimization step: 953. Total energy = 12946.2583 kcal/mol (12938.1169 without restraints) Performing minimization step: 954. Total energy = 12938.2922 kcal/mol (12930.1533 without restraints) Performing minimization step: 955. Total energy = 12930.3379 kcal/mol (12922.2013 without restraints) Performing minimization step: 956. Total energy = 12922.3943 kcal/mol (12914.2600 without restraints) Performing minimization step: 957. Total energy = 12914.4624 kcal/mol (12906.3304 without restraints) Performing minimization step: 958. Total energy = 12906.5416 kcal/mol (12898.4120 without restraints) Performing minimization step: 959. Total energy = 12898.6321 kcal/mol (12890.5049 without restraints) Performing minimization step: 960. Total energy = 12890.7340 kcal/mol (12882.6093 without restraints) Performing minimization step: 961. Total energy = 12882.8475 kcal/mol (12874.7252 without restraints) Performing minimization step: 962. Total energy = 12874.9722 kcal/mol (12866.8520 without restraints) Performing minimization step: 963. Total energy = 12867.1079 kcal/mol (12858.9901 without restraints) Performing minimization step: 964. Total energy = 12859.2551 kcal/mol (12851.1397 without restraints) Performing minimization step: 965. Total energy = 12851.4136 kcal/mol (12843.3005 without restraints) Performing minimization step: 966. Total energy = 12843.5833 kcal/mol (12835.4726 without restraints) Performing minimization step: 967. Total energy = 12835.7641 kcal/mol (12827.6557 without restraints) Performing minimization step: 968. Total energy = 12827.9555 kcal/mol (12819.8496 without restraints) Performing minimization step: 969. Total energy = 12820.1587 kcal/mol (12812.0550 without restraints) Performing minimization step: 970. Total energy = 12812.3729 kcal/mol (12804.2716 without restraints) Performing minimization step: 971. Total energy = 12804.5982 kcal/mol (12796.4992 without restraints) Performing minimization step: 972. Total energy = 12796.8345 kcal/mol (12788.7379 without restraints) Performing minimization step: 973. Total energy = 12789.0815 kcal/mol (12780.9871 without restraints) Performing minimization step: 974. Total energy = 12781.3396 kcal/mol (12773.2475 without restraints) Performing minimization step: 975. Total energy = 12773.6087 kcal/mol (12765.5190 without restraints) Performing minimization step: 976. Total energy = 12765.8889 kcal/mol (12757.8015 without restraints) Performing minimization step: 977. Total energy = 12758.1800 kcal/mol (12750.0949 without restraints) Performing minimization step: 978. Total energy = 12750.4817 kcal/mol (12742.3989 without restraints) Performing minimization step: 979. Total energy = 12742.7943 kcal/mol (12734.7138 without restraints) Performing minimization step: 980. Total energy = 12735.1180 kcal/mol (12727.0400 without restraints) Performing minimization step: 981. Total energy = 12727.4528 kcal/mol (12719.3770 without restraints) Performing minimization step: 982. Total energy = 12719.7981 kcal/mol (12711.7246 without restraints) Performing minimization step: 983. Total energy = 12712.1539 kcal/mol (12704.0827 without restraints) Performing minimization step: 984. Total energy = 12704.5207 kcal/mol (12696.4517 without restraints) Performing minimization step: 985. Total energy = 12696.8981 kcal/mol (12688.8314 without restraints) Performing minimization step: 986. Total energy = 12689.2867 kcal/mol (12681.2223 without restraints) Performing minimization step: 987. Total energy = 12681.6854 kcal/mol (12673.6233 without restraints) Performing minimization step: 988. Total energy = 12674.0947 kcal/mol (12666.0349 without restraints) Performing minimization step: 989. Total energy = 12666.5146 kcal/mol (12658.4571 without restraints) Performing minimization step: 990. Total energy = 12658.9455 kcal/mol (12650.8904 without restraints) Performing minimization step: 991. Total energy = 12651.3866 kcal/mol (12643.3338 without restraints) Performing minimization step: 992. Total energy = 12643.8385 kcal/mol (12635.7880 without restraints) Performing minimization step: 993. Total energy = 12636.3006 kcal/mol (12628.2522 without restraints) Performing minimization step: 994. Total energy = 12628.7732 kcal/mol (12620.7271 without restraints) Performing minimization step: 995. Total energy = 12621.2561 kcal/mol (12613.2123 without restraints) Performing minimization step: 996. Total energy = 12613.7494 kcal/mol (12605.7079 without restraints) Performing minimization step: 997. Total energy = 12606.2536 kcal/mol (12598.2143 without restraints) Performing minimization step: 998. Total energy = 12598.7675 kcal/mol (12590.7303 without restraints) Performing minimization step: 999. Total energy = 12591.2919 kcal/mol (12583.2572 without restraints) Performing minimization step: 1000. Total energy = 12583.8265 kcal/mol (12575.7940 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 12576.3715 kcal/mol (12568.3413 without restraints) Performing minimization step: 1002. Total energy = 12568.9273 kcal/mol (12560.8994 without restraints) Performing minimization step: 1003. Total energy = 12561.4929 kcal/mol (12553.4673 without restraints) Performing minimization step: 1004. Total energy = 12554.0687 kcal/mol (12546.0453 without restraints) Performing minimization step: 1005. Total energy = 12546.6546 kcal/mol (12538.6336 without restraints) Performing minimization step: 1006. Total energy = 12539.2512 kcal/mol (12531.2323 without restraints) Performing minimization step: 1007. Total energy = 12531.8578 kcal/mol (12523.8411 without restraints) Performing minimization step: 1008. Total energy = 12524.4747 kcal/mol (12516.4604 without restraints) Performing minimization step: 1009. Total energy = 12517.1016 kcal/mol (12509.0895 without restraints) Performing minimization step: 1010. Total energy = 12509.7379 kcal/mol (12501.7279 without restraints) Performing minimization step: 1011. Total energy = 12502.3847 kcal/mol (12494.3771 without restraints) Performing minimization step: 1012. Total energy = 12495.0416 kcal/mol (12487.0362 without restraints) Performing minimization step: 1013. Total energy = 12487.7087 kcal/mol (12479.7054 without restraints) Performing minimization step: 1014. Total energy = 12480.3856 kcal/mol (12472.3846 without restraints) Performing minimization step: 1015. Total energy = 12473.0730 kcal/mol (12465.0743 without restraints) Performing minimization step: 1016. Total energy = 12465.7699 kcal/mol (12457.7734 without restraints) Performing minimization step: 1017. Total energy = 12458.4770 kcal/mol (12450.4828 without restraints) Performing minimization step: 1018. Total energy = 12451.1941 kcal/mol (12443.2021 without restraints) Performing minimization step: 1019. Total energy = 12443.9209 kcal/mol (12435.9310 without restraints) Performing minimization step: 1020. Total energy = 12436.6578 kcal/mol (12428.6703 without restraints) Performing minimization step: 1021. Total energy = 12429.4049 kcal/mol (12421.4194 without restraints) Performing minimization step: 1022. Total energy = 12422.1615 kcal/mol (12414.1784 without restraints) Performing minimization step: 1023. Total energy = 12414.9278 kcal/mol (12406.9469 without restraints) Performing minimization step: 1024. Total energy = 12407.7038 kcal/mol (12399.7251 without restraints) Performing minimization step: 1025. Total energy = 12400.4899 kcal/mol (12392.5135 without restraints) Performing minimization step: 1026. Total energy = 12393.2856 kcal/mol (12385.3114 without restraints) Performing minimization step: 1027. Total energy = 12386.0910 kcal/mol (12378.1189 without restraints) Performing minimization step: 1028. Total energy = 12378.9065 kcal/mol (12370.9367 without restraints) Performing minimization step: 1029. Total energy = 12371.7311 kcal/mol (12363.7635 without restraints) Performing minimization step: 1030. Total energy = 12364.5653 kcal/mol (12356.5998 without restraints) Performing minimization step: 1031. Total energy = 12357.4093 kcal/mol (12349.4461 without restraints) Performing minimization step: 1032. Total energy = 12350.2630 kcal/mol (12342.3020 without restraints) Performing minimization step: 1033. Total energy = 12343.1263 kcal/mol (12335.1675 without restraints) Performing minimization step: 1034. Total energy = 12335.9993 kcal/mol (12328.0427 without restraints) Performing minimization step: 1035. Total energy = 12328.8819 kcal/mol (12320.9275 without restraints) Performing minimization step: 1036. Total energy = 12321.7739 kcal/mol (12313.8217 without restraints) Performing minimization step: 1037. Total energy = 12314.6756 kcal/mol (12306.7256 without restraints) Performing minimization step: 1038. Total energy = 12307.5867 kcal/mol (12299.6388 without restraints) Performing minimization step: 1039. Total energy = 12300.5071 kcal/mol (12292.5615 without restraints) Performing minimization step: 1040. Total energy = 12293.4367 kcal/mol (12285.4933 without restraints) Performing minimization step: 1041. Total energy = 12286.3762 kcal/mol (12278.4350 without restraints) Performing minimization step: 1042. Total energy = 12279.3256 kcal/mol (12271.3865 without restraints) Performing minimization step: 1043. Total energy = 12272.2838 kcal/mol (12264.3469 without restraints) Performing minimization step: 1044. Total energy = 12265.2512 kcal/mol (12257.3165 without restraints) Performing minimization step: 1045. Total energy = 12258.2278 kcal/mol (12250.2953 without restraints) Performing minimization step: 1046. Total energy = 12251.2139 kcal/mol (12243.2836 without restraints) Performing minimization step: 1047. Total energy = 12244.2099 kcal/mol (12236.2819 without restraints) Performing minimization step: 1048. Total energy = 12237.2151 kcal/mol (12229.2892 without restraints) Performing minimization step: 1049. Total energy = 12230.2294 kcal/mol (12222.3055 without restraints) Performing minimization step: 1050. Total energy = 12223.2530 kcal/mol (12215.3314 without restraints) Performing minimization step: 1051. Total energy = 12216.2853 kcal/mol (12208.3658 without restraints) Performing minimization step: 1052. Total energy = 12209.3271 kcal/mol (12201.4098 without restraints) Performing minimization step: 1053. Total energy = 12202.3782 kcal/mol (12194.4630 without restraints) Performing minimization step: 1054. Total energy = 12195.4385 kcal/mol (12187.5255 without restraints) Performing minimization step: 1055. Total energy = 12188.5076 kcal/mol (12180.5968 without restraints) Performing minimization step: 1056. Total energy = 12181.5859 kcal/mol (12173.6772 without restraints) Performing minimization step: 1057. Total energy = 12174.6739 kcal/mol (12166.7675 without restraints) Performing minimization step: 1058. Total energy = 12167.7705 kcal/mol (12159.8662 without restraints) Performing minimization step: 1059. Total energy = 12160.8762 kcal/mol (12152.9741 without restraints) Performing minimization step: 1060. Total energy = 12153.9914 kcal/mol (12146.0914 without restraints) Performing minimization step: 1061. Total energy = 12147.1154 kcal/mol (12139.2176 without restraints) Performing minimization step: 1062. Total energy = 12140.2486 kcal/mol (12132.3529 without restraints) Performing minimization step: 1063. Total energy = 12133.3906 kcal/mol (12125.4970 without restraints) Performing minimization step: 1064. Total energy = 12126.5418 kcal/mol (12118.6504 without restraints) Performing minimization step: 1065. Total energy = 12119.7014 kcal/mol (12111.8122 without restraints) Performing minimization step: 1066. Total energy = 12112.8703 kcal/mol (12104.9832 without restraints) Performing minimization step: 1067. Total energy = 12106.0484 kcal/mol (12098.1635 without restraints) Performing minimization step: 1068. Total energy = 12099.2353 kcal/mol (12091.3525 without restraints) Performing minimization step: 1069. Total energy = 12092.4311 kcal/mol (12084.5503 without restraints) Performing minimization step: 1070. Total energy = 12085.6355 kcal/mol (12077.7570 without restraints) Performing minimization step: 1071. Total energy = 12078.8489 kcal/mol (12070.9724 without restraints) Performing minimization step: 1072. Total energy = 12072.0714 kcal/mol (12064.1971 without restraints) Performing minimization step: 1073. Total energy = 12065.3028 kcal/mol (12057.4307 without restraints) Performing minimization step: 1074. Total energy = 12058.5433 kcal/mol (12050.6733 without restraints) Performing minimization step: 1075. Total energy = 12051.7922 kcal/mol (12043.9244 without restraints) Performing minimization step: 1076. Total energy = 12045.0497 kcal/mol (12037.1841 without restraints) Performing minimization step: 1077. Total energy = 12038.3163 kcal/mol (12030.4528 without restraints) Performing minimization step: 1078. Total energy = 12031.5915 kcal/mol (12023.7301 without restraints) Performing minimization step: 1079. Total energy = 12024.8752 kcal/mol (12017.0158 without restraints) Performing minimization step: 1080. Total energy = 12018.1675 kcal/mol (12010.3103 without restraints) Performing minimization step: 1081. Total energy = 12011.4688 kcal/mol (12003.6137 without restraints) Performing minimization step: 1082. Total energy = 12004.7790 kcal/mol (11996.9260 without restraints) Performing minimization step: 1083. Total energy = 11998.0972 kcal/mol (11990.2464 without restraints) Performing minimization step: 1084. Total energy = 11991.4247 kcal/mol (11983.5763 without restraints) Performing minimization step: 1085. Total energy = 11984.7607 kcal/mol (11976.9143 without restraints) Performing minimization step: 1086. Total energy = 11978.1053 kcal/mol (11970.2609 without restraints) Performing minimization step: 1087. Total energy = 11971.4587 kcal/mol (11963.6165 without restraints) Performing minimization step: 1088. Total energy = 11964.8204 kcal/mol (11956.9801 without restraints) Performing minimization step: 1089. Total energy = 11958.1908 kcal/mol (11950.3527 without restraints) Performing minimization step: 1090. Total energy = 11951.5696 kcal/mol (11943.7336 without restraints) Performing minimization step: 1091. Total energy = 11944.9570 kcal/mol (11937.1231 without restraints) Performing minimization step: 1092. Total energy = 11938.3526 kcal/mol (11930.5209 without restraints) Performing minimization step: 1093. Total energy = 11931.7568 kcal/mol (11923.9273 without restraints) Performing minimization step: 1094. Total energy = 11925.1698 kcal/mol (11917.3422 without restraints) Performing minimization step: 1095. Total energy = 11918.5911 kcal/mol (11910.7657 without restraints) Performing minimization step: 1096. Total energy = 11912.0210 kcal/mol (11904.1978 without restraints) Performing minimization step: 1097. Total energy = 11905.4590 kcal/mol (11897.6376 without restraints) Performing minimization step: 1098. Total energy = 11898.9056 kcal/mol (11891.0865 without restraints) Performing minimization step: 1099. Total energy = 11892.3605 kcal/mol (11884.5435 without restraints) Performing minimization step: 1100. Total energy = 11885.8234 kcal/mol (11878.0084 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 11879.2948 kcal/mol (11871.4820 without restraints) Performing minimization step: 1102. Total energy = 11872.7748 kcal/mol (11864.9641 without restraints) Performing minimization step: 1103. Total energy = 11866.2629 kcal/mol (11858.4543 without restraints) Performing minimization step: 1104. Total energy = 11859.7595 kcal/mol (11851.9530 without restraints) Performing minimization step: 1105. Total energy = 11853.2643 kcal/mol (11845.4598 without restraints) Performing minimization step: 1106. Total energy = 11846.7777 kcal/mol (11838.9754 without restraints) Performing minimization step: 1107. Total energy = 11840.2993 kcal/mol (11832.4991 without restraints) Performing minimization step: 1108. Total energy = 11833.8290 kcal/mol (11826.0309 without restraints) Performing minimization step: 1109. Total energy = 11827.3670 kcal/mol (11819.5709 without restraints) Performing minimization step: 1110. Total energy = 11820.9136 kcal/mol (11813.1196 without restraints) Performing minimization step: 1111. Total energy = 11814.4678 kcal/mol (11806.6759 without restraints) Performing minimization step: 1112. Total energy = 11808.0306 kcal/mol (11800.2408 without restraints) Performing minimization step: 1113. Total energy = 11801.6010 kcal/mol (11793.8133 without restraints) Performing minimization step: 1114. Total energy = 11795.1799 kcal/mol (11787.3942 without restraints) Performing minimization step: 1115. Total energy = 11788.7671 kcal/mol (11780.9835 without restraints) Performing minimization step: 1116. Total energy = 11782.3622 kcal/mol (11774.5808 without restraints) Performing minimization step: 1117. Total energy = 11775.9659 kcal/mol (11768.1865 without restraints) Performing minimization step: 1118. Total energy = 11769.5774 kcal/mol (11761.8000 without restraints) Performing minimization step: 1119. Total energy = 11763.1968 kcal/mol (11755.4215 without restraints) Performing minimization step: 1120. Total energy = 11756.8243 kcal/mol (11749.0511 without restraints) Performing minimization step: 1121. Total energy = 11750.4599 kcal/mol (11742.6888 without restraints) Performing minimization step: 1122. Total energy = 11744.1038 kcal/mol (11736.3348 without restraints) Performing minimization step: 1123. Total energy = 11737.7556 kcal/mol (11729.9887 without restraints) Performing minimization step: 1124. Total energy = 11731.4154 kcal/mol (11723.6506 without restraints) Performing minimization step: 1125. Total energy = 11725.0833 kcal/mol (11717.3203 without restraints) Performing minimization step: 1126. Total energy = 11718.7591 kcal/mol (11710.9984 without restraints) Performing minimization step: 1127. Total energy = 11712.4427 kcal/mol (11704.6838 without restraints) Performing minimization step: 1128. Total energy = 11706.1339 kcal/mol (11698.3773 without restraints) Performing minimization step: 1129. Total energy = 11699.8333 kcal/mol (11692.0790 without restraints) Performing minimization step: 1130. Total energy = 11693.5408 kcal/mol (11685.7883 without restraints) Performing minimization step: 1131. Total energy = 11687.2558 kcal/mol (11679.5054 without restraints) Performing minimization step: 1132. Total energy = 11680.9787 kcal/mol (11673.2305 without restraints) Performing minimization step: 1133. Total energy = 11674.7101 kcal/mol (11666.9639 without restraints) Performing minimization step: 1134. Total energy = 11668.4490 kcal/mol (11660.7048 without restraints) Performing minimization step: 1135. Total energy = 11662.1957 kcal/mol (11654.4535 without restraints) Performing minimization step: 1136. Total energy = 11655.9502 kcal/mol (11648.2101 without restraints) Performing minimization step: 1137. Total energy = 11649.7125 kcal/mol (11641.9745 without restraints) Performing minimization step: 1138. Total energy = 11643.4827 kcal/mol (11635.7468 without restraints) Performing minimization step: 1139. Total energy = 11637.2609 kcal/mol (11629.5271 without restraints) Performing minimization step: 1140. Total energy = 11631.0466 kcal/mol (11623.3148 without restraints) Performing minimization step: 1141. Total energy = 11624.8399 kcal/mol (11617.1100 without restraints) Performing minimization step: 1142. Total energy = 11618.6411 kcal/mol (11610.9133 without restraints) Performing minimization step: 1143. Total energy = 11612.4502 kcal/mol (11604.7245 without restraints) Performing minimization step: 1144. Total energy = 11606.2670 kcal/mol (11598.5434 without restraints) Performing minimization step: 1145. Total energy = 11600.0914 kcal/mol (11592.3699 without restraints) Performing minimization step: 1146. Total energy = 11593.9237 kcal/mol (11586.2042 without restraints) Performing minimization step: 1147. Total energy = 11587.7634 kcal/mol (11580.0459 without restraints) Performing minimization step: 1148. Total energy = 11581.6109 kcal/mol (11573.8955 without restraints) Performing minimization step: 1149. Total energy = 11575.4660 kcal/mol (11567.7526 without restraints) Performing minimization step: 1150. Total energy = 11569.3288 kcal/mol (11561.6175 without restraints) Performing minimization step: 1151. Total energy = 11563.1986 kcal/mol (11555.4893 without restraints) Performing minimization step: 1152. Total energy = 11557.0769 kcal/mol (11549.3696 without restraints) Performing minimization step: 1153. Total energy = 11550.9619 kcal/mol (11543.2566 without restraints) Performing minimization step: 1154. Total energy = 11544.8551 kcal/mol (11537.1520 without restraints) Performing minimization step: 1155. Total energy = 11538.7564 kcal/mol (11531.0554 without restraints) Performing minimization step: 1156. Total energy = 11532.6649 kcal/mol (11524.9658 without restraints) Performing minimization step: 1157. Total energy = 11526.5809 kcal/mol (11518.8840 without restraints) Performing minimization step: 1158. Total energy = 11520.5042 kcal/mol (11512.8092 without restraints) Performing minimization step: 1159. Total energy = 11514.4352 kcal/mol (11506.7423 without restraints) Performing minimization step: 1160. Total energy = 11508.3735 kcal/mol (11500.6825 without restraints) Performing minimization step: 1161. Total energy = 11502.3193 kcal/mol (11494.6305 without restraints) Performing minimization step: 1162. Total energy = 11496.2726 kcal/mol (11488.5856 without restraints) Performing minimization step: 1163. Total energy = 11490.2328 kcal/mol (11482.5479 without restraints) Performing minimization step: 1164. Total energy = 11484.2009 kcal/mol (11476.5181 without restraints) Performing minimization step: 1165. Total energy = 11478.1765 kcal/mol (11470.4957 without restraints) Performing minimization step: 1166. Total energy = 11472.1593 kcal/mol (11464.4805 without restraints) Performing minimization step: 1167. Total energy = 11466.1498 kcal/mol (11458.4731 without restraints) Performing minimization step: 1168. Total energy = 11460.1478 kcal/mol (11452.4731 without restraints) Performing minimization step: 1169. Total energy = 11454.1533 kcal/mol (11446.4807 without restraints) Performing minimization step: 1170. Total energy = 11448.1661 kcal/mol (11440.4954 without restraints) Performing minimization step: 1171. Total energy = 11442.1861 kcal/mol (11434.5175 without restraints) Performing minimization step: 1172. Total energy = 11436.2132 kcal/mol (11428.5466 without restraints) Performing minimization step: 1173. Total energy = 11430.2481 kcal/mol (11422.5835 without restraints) Performing minimization step: 1174. Total energy = 11424.2901 kcal/mol (11416.6277 without restraints) Performing minimization step: 1175. Total energy = 11418.3396 kcal/mol (11410.6791 without restraints) Performing minimization step: 1176. Total energy = 11412.3964 kcal/mol (11404.7380 without restraints) Performing minimization step: 1177. Total energy = 11406.4603 kcal/mol (11398.8038 without restraints) Performing minimization step: 1178. Total energy = 11400.5313 kcal/mol (11392.8769 without restraints) Performing minimization step: 1179. Total energy = 11394.6099 kcal/mol (11386.9576 without restraints) Performing minimization step: 1180. Total energy = 11388.6955 kcal/mol (11381.0451 without restraints) Performing minimization step: 1181. Total energy = 11382.7885 kcal/mol (11375.1402 without restraints) Performing minimization step: 1182. Total energy = 11376.8886 kcal/mol (11369.2423 without restraints) Performing minimization step: 1183. Total energy = 11370.9955 kcal/mol (11363.3511 without restraints) Performing minimization step: 1184. Total energy = 11365.1098 kcal/mol (11357.4674 without restraints) Performing minimization step: 1185. Total energy = 11359.2308 kcal/mol (11351.5904 without restraints) Performing minimization step: 1186. Total energy = 11353.3595 kcal/mol (11345.7211 without restraints) Performing minimization step: 1187. Total energy = 11347.4949 kcal/mol (11339.8586 without restraints) Performing minimization step: 1188. Total energy = 11341.6379 kcal/mol (11334.0037 without restraints) Performing minimization step: 1189. Total energy = 11335.7885 kcal/mol (11328.1562 without restraints) Performing minimization step: 1190. Total energy = 11329.9462 kcal/mol (11322.3159 without restraints) Performing minimization step: 1191. Total energy = 11324.1106 kcal/mol (11316.4823 without restraints) Performing minimization step: 1192. Total energy = 11318.2823 kcal/mol (11310.6561 without restraints) Performing minimization step: 1193. Total energy = 11312.4613 kcal/mol (11304.8372 without restraints) Performing minimization step: 1194. Total energy = 11306.6471 kcal/mol (11299.0249 without restraints) Performing minimization step: 1195. Total energy = 11300.8396 kcal/mol (11293.2193 without restraints) Performing minimization step: 1196. Total energy = 11295.0393 kcal/mol (11287.4210 without restraints) Performing minimization step: 1197. Total energy = 11289.2460 kcal/mol (11281.6297 without restraints) Performing minimization step: 1198. Total energy = 11283.4596 kcal/mol (11275.8454 without restraints) Performing minimization step: 1199. Total energy = 11277.6806 kcal/mol (11270.0684 without restraints) Performing minimization step: 1200. Total energy = 11271.9085 kcal/mol (11264.2982 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 11266.1431 kcal/mol (11258.5350 without restraints) Performing minimization step: 1202. Total energy = 11260.3850 kcal/mol (11252.7788 without restraints) Performing minimization step: 1203. Total energy = 11254.6342 kcal/mol (11247.0299 without restraints) Performing minimization step: 1204. Total energy = 11248.8898 kcal/mol (11241.2876 without restraints) Performing minimization step: 1205. Total energy = 11243.1525 kcal/mol (11235.5522 without restraints) Performing minimization step: 1206. Total energy = 11237.4222 kcal/mol (11229.8240 without restraints) Performing minimization step: 1207. Total energy = 11231.6984 kcal/mol (11224.1021 without restraints) Performing minimization step: 1208. Total energy = 11225.9815 kcal/mol (11218.3872 without restraints) Performing minimization step: 1209. Total energy = 11220.2717 kcal/mol (11212.6793 without restraints) Performing minimization step: 1210. Total energy = 11214.5687 kcal/mol (11206.9784 without restraints) Performing minimization step: 1211. Total energy = 11208.8725 kcal/mol (11201.2842 without restraints) Performing minimization step: 1212. Total energy = 11203.1827 kcal/mol (11195.5963 without restraints) Performing minimization step: 1213. Total energy = 11197.5003 kcal/mol (11189.9159 without restraints) Performing minimization step: 1214. Total energy = 11191.8248 kcal/mol (11184.2425 without restraints) Performing minimization step: 1215. Total energy = 11186.1563 kcal/mol (11178.5759 without restraints) Performing minimization step: 1216. Total energy = 11180.4945 kcal/mol (11172.9162 without restraints) Performing minimization step: 1217. Total energy = 11174.8394 kcal/mol (11167.2630 without restraints) Performing minimization step: 1218. Total energy = 11169.1913 kcal/mol (11161.6169 without restraints) Performing minimization step: 1219. Total energy = 11163.5499 kcal/mol (11155.9775 without restraints) Performing minimization step: 1220. Total energy = 11157.9148 kcal/mol (11150.3445 without restraints) Performing minimization step: 1221. Total energy = 11152.2868 kcal/mol (11144.7185 without restraints) Performing minimization step: 1222. Total energy = 11146.6656 kcal/mol (11139.0992 without restraints) Performing minimization step: 1223. Total energy = 11141.0511 kcal/mol (11133.4866 without restraints) Performing minimization step: 1224. Total energy = 11135.4435 kcal/mol (11127.8810 without restraints) Performing minimization step: 1225. Total energy = 11129.8428 kcal/mol (11122.2823 without restraints) Performing minimization step: 1226. Total energy = 11124.2488 kcal/mol (11116.6903 without restraints) Performing minimization step: 1227. Total energy = 11118.6613 kcal/mol (11111.1048 without restraints) Performing minimization step: 1228. Total energy = 11113.0806 kcal/mol (11105.5261 without restraints) Performing minimization step: 1229. Total energy = 11107.5061 kcal/mol (11099.9536 without restraints) Performing minimization step: 1230. Total energy = 11101.9386 kcal/mol (11094.3881 without restraints) Performing minimization step: 1231. Total energy = 11096.3778 kcal/mol (11088.8292 without restraints) Performing minimization step: 1232. Total energy = 11090.8242 kcal/mol (11083.2776 without restraints) Performing minimization step: 1233. Total energy = 11085.2772 kcal/mol (11077.7325 without restraints) Performing minimization step: 1234. Total energy = 11079.7362 kcal/mol (11072.1936 without restraints) Performing minimization step: 1235. Total energy = 11074.2017 kcal/mol (11066.6610 without restraints) Performing minimization step: 1236. Total energy = 11068.6743 kcal/mol (11061.1357 without restraints) Performing minimization step: 1237. Total energy = 11063.1531 kcal/mol (11055.6164 without restraints) Performing minimization step: 1238. Total energy = 11057.6390 kcal/mol (11050.1043 without restraints) Performing minimization step: 1239. Total energy = 11052.1310 kcal/mol (11044.5982 without restraints) Performing minimization step: 1240. Total energy = 11046.6297 kcal/mol (11039.0987 without restraints) Performing minimization step: 1241. Total energy = 11041.1346 kcal/mol (11033.6058 without restraints) Performing minimization step: 1242. Total energy = 11035.6463 kcal/mol (11028.1194 without restraints) Performing minimization step: 1243. Total energy = 11030.1644 kcal/mol (11022.6395 without restraints) Performing minimization step: 1244. Total energy = 11024.6891 kcal/mol (11017.1662 without restraints) Performing minimization step: 1245. Total energy = 11019.2201 kcal/mol (11011.6991 without restraints) Performing minimization step: 1246. Total energy = 11013.7573 kcal/mol (11006.2383 without restraints) Performing minimization step: 1247. Total energy = 11008.3015 kcal/mol (11000.7845 without restraints) Performing minimization step: 1248. Total energy = 11002.8524 kcal/mol (10995.3374 without restraints) Performing minimization step: 1249. Total energy = 10997.4099 kcal/mol (10989.8970 without restraints) Performing minimization step: 1250. Total energy = 10991.9735 kcal/mol (10984.4624 without restraints) Performing minimization step: 1251. Total energy = 10986.5435 kcal/mol (10979.0344 without restraints) Performing minimization step: 1252. Total energy = 10981.1202 kcal/mol (10973.6130 without restraints) Performing minimization step: 1253. Total energy = 10975.7031 kcal/mol (10968.1979 without restraints) Performing minimization step: 1254. Total energy = 10970.2925 kcal/mol (10962.7894 without restraints) Performing minimization step: 1255. Total energy = 10964.8883 kcal/mol (10957.3870 without restraints) Performing minimization step: 1256. Total energy = 10959.4905 kcal/mol (10951.9913 without restraints) Performing minimization step: 1257. Total energy = 10954.0993 kcal/mol (10946.6019 without restraints) Performing minimization step: 1258. Total energy = 10948.7137 kcal/mol (10941.2183 without restraints) Performing minimization step: 1259. Total energy = 10943.3354 kcal/mol (10935.8419 without restraints) Performing minimization step: 1260. Total energy = 10937.9630 kcal/mol (10930.4715 without restraints) Performing minimization step: 1261. Total energy = 10932.5969 kcal/mol (10925.1074 without restraints) Performing minimization step: 1262. Total energy = 10927.2376 kcal/mol (10919.7500 without restraints) Performing minimization step: 1263. Total energy = 10921.8840 kcal/mol (10914.3983 without restraints) Performing minimization step: 1264. Total energy = 10916.5369 kcal/mol (10909.0533 without restraints) Performing minimization step: 1265. Total energy = 10911.1962 kcal/mol (10903.7145 without restraints) Performing minimization step: 1266. Total energy = 10905.8616 kcal/mol (10898.3819 without restraints) Performing minimization step: 1267. Total energy = 10900.5335 kcal/mol (10893.0557 without restraints) Performing minimization step: 1268. Total energy = 10895.2119 kcal/mol (10887.7361 without restraints) Performing minimization step: 1269. Total energy = 10889.8962 kcal/mol (10882.4224 without restraints) Performing minimization step: 1270. Total energy = 10884.5869 kcal/mol (10877.1150 without restraints) Performing minimization step: 1271. Total energy = 10879.2836 kcal/mol (10871.8136 without restraints) Performing minimization step: 1272. Total energy = 10873.9866 kcal/mol (10866.5186 without restraints) Performing minimization step: 1273. Total energy = 10868.6961 kcal/mol (10861.2300 without restraints) Performing minimization step: 1274. Total energy = 10863.4115 kcal/mol (10855.9474 without restraints) Performing minimization step: 1275. Total energy = 10858.1330 kcal/mol (10850.6709 without restraints) Performing minimization step: 1276. Total energy = 10852.8607 kcal/mol (10845.4005 without restraints) Performing minimization step: 1277. Total energy = 10847.5947 kcal/mol (10840.1364 without restraints) Performing minimization step: 1278. Total energy = 10842.3349 kcal/mol (10834.8786 without restraints) Performing minimization step: 1279. Total energy = 10837.0810 kcal/mol (10829.6265 without restraints) Performing minimization step: 1280. Total energy = 10831.8336 kcal/mol (10824.3813 without restraints) Performing minimization step: 1281. Total energy = 10826.5924 kcal/mol (10819.1419 without restraints) Performing minimization step: 1282. Total energy = 10821.3570 kcal/mol (10813.9084 without restraints) Performing minimization step: 1283. Total energy = 10816.1280 kcal/mol (10808.6814 without restraints) Performing minimization step: 1284. Total energy = 10810.9051 kcal/mol (10803.4605 without restraints) Performing minimization step: 1285. Total energy = 10805.6886 kcal/mol (10798.2460 without restraints) Performing minimization step: 1286. Total energy = 10800.4778 kcal/mol (10793.0370 without restraints) Performing minimization step: 1287. Total energy = 10795.2732 kcal/mol (10787.8344 without restraints) Performing minimization step: 1288. Total energy = 10790.0748 kcal/mol (10782.6379 without restraints) Performing minimization step: 1289. Total energy = 10784.8824 kcal/mol (10777.4475 without restraints) Performing minimization step: 1290. Total energy = 10779.6963 kcal/mol (10772.2634 without restraints) Performing minimization step: 1291. Total energy = 10774.5160 kcal/mol (10767.0850 without restraints) Performing minimization step: 1292. Total energy = 10769.3415 kcal/mol (10761.9124 without restraints) Performing minimization step: 1293. Total energy = 10764.1734 kcal/mol (10756.7463 without restraints) Performing minimization step: 1294. Total energy = 10759.0113 kcal/mol (10751.5861 without restraints) Performing minimization step: 1295. Total energy = 10753.8551 kcal/mol (10746.4316 without restraints) Performing minimization step: 1296. Total energy = 10748.7047 kcal/mol (10741.2834 without restraints) Performing minimization step: 1297. Total energy = 10743.5606 kcal/mol (10736.1412 without restraints) Performing minimization step: 1298. Total energy = 10738.4224 kcal/mol (10731.0050 without restraints) Performing minimization step: 1299. Total energy = 10733.2905 kcal/mol (10725.8751 without restraints) Performing minimization step: 1300. Total energy = 10728.1644 kcal/mol (10720.7509 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 10723.0441 kcal/mol (10715.6325 without restraints) Performing minimization step: 1302. Total energy = 10717.9303 kcal/mol (10710.5206 without restraints) Performing minimization step: 1303. Total energy = 10712.8220 kcal/mol (10705.4142 without restraints) Performing minimization step: 1304. Total energy = 10707.7198 kcal/mol (10700.3141 without restraints) Performing minimization step: 1305. Total energy = 10702.6225 kcal/mol (10695.2187 without restraints) Performing minimization step: 1306. Total energy = 10697.5322 kcal/mol (10690.1304 without restraints) Performing minimization step: 1307. Total energy = 10692.4474 kcal/mol (10685.0473 without restraints) Performing minimization step: 1308. Total energy = 10687.3686 kcal/mol (10679.9705 without restraints) Performing minimization step: 1309. Total energy = 10682.2958 kcal/mol (10674.8996 without restraints) Performing minimization step: 1310. Total energy = 10677.2286 kcal/mol (10669.8343 without restraints) Performing minimization step: 1311. Total energy = 10672.1673 kcal/mol (10664.7751 without restraints) Performing minimization step: 1312. Total energy = 10667.1122 kcal/mol (10659.7219 without restraints) Performing minimization step: 1313. Total energy = 10662.0624 kcal/mol (10654.6739 without restraints) Performing minimization step: 1314. Total energy = 10657.0191 kcal/mol (10649.6328 without restraints) Performing minimization step: 1315. Total energy = 10651.9808 kcal/mol (10644.5963 without restraints) Performing minimization step: 1316. Total energy = 10646.9489 kcal/mol (10639.5663 without restraints) Performing minimization step: 1317. Total energy = 10641.9231 kcal/mol (10634.5425 without restraints) Performing minimization step: 1318. Total energy = 10636.9029 kcal/mol (10629.5241 without restraints) Performing minimization step: 1319. Total energy = 10631.8883 kcal/mol (10624.5115 without restraints) Performing minimization step: 1320. Total energy = 10626.8797 kcal/mol (10619.5050 without restraints) Performing minimization step: 1321. Total energy = 10621.8773 kcal/mol (10614.5046 without restraints) Performing minimization step: 1322. Total energy = 10616.8803 kcal/mol (10609.5093 without restraints) Performing minimization step: 1323. Total energy = 10611.8890 kcal/mol (10604.5199 without restraints) Performing minimization step: 1324. Total energy = 10606.9031 kcal/mol (10599.5360 without restraints) Performing minimization step: 1325. Total energy = 10601.9236 kcal/mol (10594.5584 without restraints) Performing minimization step: 1326. Total energy = 10596.9499 kcal/mol (10589.5866 without restraints) Performing minimization step: 1327. Total energy = 10591.9817 kcal/mol (10584.6203 without restraints) Performing minimization step: 1328. Total energy = 10587.0190 kcal/mol (10579.6594 without restraints) Performing minimization step: 1329. Total energy = 10582.0621 kcal/mol (10574.7045 without restraints) Performing minimization step: 1330. Total energy = 10577.1110 kcal/mol (10569.7554 without restraints) Performing minimization step: 1331. Total energy = 10572.1654 kcal/mol (10564.8117 without restraints) Performing minimization step: 1332. Total energy = 10567.2259 kcal/mol (10559.8741 without restraints) Performing minimization step: 1333. Total energy = 10562.2919 kcal/mol (10554.9421 without restraints) Performing minimization step: 1334. Total energy = 10557.3639 kcal/mol (10550.0159 without restraints) Performing minimization step: 1335. Total energy = 10552.4410 kcal/mol (10545.0950 without restraints) Performing minimization step: 1336. Total energy = 10547.5240 kcal/mol (10540.1798 without restraints) Performing minimization step: 1337. Total energy = 10542.6127 kcal/mol (10535.2706 without restraints) Performing minimization step: 1338. Total energy = 10537.7068 kcal/mol (10530.3665 without restraints) Performing minimization step: 1339. Total energy = 10532.8070 kcal/mol (10525.4686 without restraints) Performing minimization step: 1340. Total energy = 10527.9125 kcal/mol (10520.5761 without restraints) Performing minimization step: 1341. Total energy = 10523.0238 kcal/mol (10515.6894 without restraints) Performing minimization step: 1342. Total energy = 10518.1404 kcal/mol (10510.8078 without restraints) Performing minimization step: 1343. Total energy = 10513.2627 kcal/mol (10505.9321 without restraints) Performing minimization step: 1344. Total energy = 10508.3909 kcal/mol (10501.0622 without restraints) Performing minimization step: 1345. Total energy = 10503.5247 kcal/mol (10496.1978 without restraints) Performing minimization step: 1346. Total energy = 10498.6638 kcal/mol (10491.3389 without restraints) Performing minimization step: 1347. Total energy = 10493.8085 kcal/mol (10486.4854 without restraints) Performing minimization step: 1348. Total energy = 10488.9590 kcal/mol (10481.6379 without restraints) Performing minimization step: 1349. Total energy = 10484.1150 kcal/mol (10476.7959 without restraints) Performing minimization step: 1350. Total energy = 10479.2765 kcal/mol (10471.9594 without restraints) Performing minimization step: 1351. Total energy = 10474.4435 kcal/mol (10467.1283 without restraints) Performing minimization step: 1352. Total energy = 10469.6162 kcal/mol (10462.3028 without restraints) Performing minimization step: 1353. Total energy = 10464.7945 kcal/mol (10457.4830 without restraints) Performing minimization step: 1354. Total energy = 10459.9780 kcal/mol (10452.6685 without restraints) Performing minimization step: 1355. Total energy = 10455.1670 kcal/mol (10447.8593 without restraints) Performing minimization step: 1356. Total energy = 10450.3616 kcal/mol (10443.0560 without restraints) Performing minimization step: 1357. Total energy = 10445.5620 kcal/mol (10438.2583 without restraints) Performing minimization step: 1358. Total energy = 10440.7674 kcal/mol (10433.4655 without restraints) Performing minimization step: 1359. Total energy = 10435.9783 kcal/mol (10428.6784 without restraints) Performing minimization step: 1360. Total energy = 10431.1949 kcal/mol (10423.8968 without restraints) Performing minimization step: 1361. Total energy = 10426.4169 kcal/mol (10419.1207 without restraints) Performing minimization step: 1362. Total energy = 10421.6439 kcal/mol (10414.3496 without restraints) Performing minimization step: 1363. Total energy = 10416.8764 kcal/mol (10409.5840 without restraints) Performing minimization step: 1364. Total energy = 10412.1146 kcal/mol (10404.8242 without restraints) Performing minimization step: 1365. Total energy = 10407.3583 kcal/mol (10400.0697 without restraints) Performing minimization step: 1366. Total energy = 10402.6068 kcal/mol (10395.3202 without restraints) Performing minimization step: 1367. Total energy = 10397.8611 kcal/mol (10390.5764 without restraints) Performing minimization step: 1368. Total energy = 10393.1209 kcal/mol (10385.8380 without restraints) Performing minimization step: 1369. Total energy = 10388.3860 kcal/mol (10381.1051 without restraints) Performing minimization step: 1370. Total energy = 10383.6567 kcal/mol (10376.3777 without restraints) Performing minimization step: 1371. Total energy = 10378.9327 kcal/mol (10371.6555 without restraints) Performing minimization step: 1372. Total energy = 10374.2145 kcal/mol (10366.9393 without restraints) Performing minimization step: 1373. Total energy = 10369.5009 kcal/mol (10362.2276 without restraints) Performing minimization step: 1374. Total energy = 10364.7927 kcal/mol (10357.5213 without restraints) Performing minimization step: 1375. Total energy = 10360.0895 kcal/mol (10352.8200 without restraints) Performing minimization step: 1376. Total energy = 10355.3926 kcal/mol (10348.1250 without restraints) Performing minimization step: 1377. Total energy = 10350.7007 kcal/mol (10343.4351 without restraints) Performing minimization step: 1378. Total energy = 10346.0142 kcal/mol (10338.7504 without restraints) Performing minimization step: 1379. Total energy = 10341.3326 kcal/mol (10334.0707 without restraints) Performing minimization step: 1380. Total energy = 10336.6563 kcal/mol (10329.3963 without restraints) Performing minimization step: 1381. Total energy = 10331.9852 kcal/mol (10324.7272 without restraints) Performing minimization step: 1382. Total energy = 10327.3198 kcal/mol (10320.0636 without restraints) Performing minimization step: 1383. Total energy = 10322.6593 kcal/mol (10315.4050 without restraints) Performing minimization step: 1384. Total energy = 10318.0044 kcal/mol (10310.7520 without restraints) Performing minimization step: 1385. Total energy = 10313.3541 kcal/mol (10306.1035 without restraints) Performing minimization step: 1386. Total energy = 10308.7095 kcal/mol (10301.4610 without restraints) Performing minimization step: 1387. Total energy = 10304.0710 kcal/mol (10296.8244 without restraints) Performing minimization step: 1388. Total energy = 10299.4369 kcal/mol (10292.1921 without restraints) Performing minimization step: 1389. Total energy = 10294.8085 kcal/mol (10287.5657 without restraints) Performing minimization step: 1390. Total energy = 10290.1850 kcal/mol (10282.9441 without restraints) Performing minimization step: 1391. Total energy = 10285.5667 kcal/mol (10278.3276 without restraints) Performing minimization step: 1392. Total energy = 10280.9532 kcal/mol (10273.7160 without restraints) Performing minimization step: 1393. Total energy = 10276.3453 kcal/mol (10269.1099 without restraints) Performing minimization step: 1394. Total energy = 10271.7424 kcal/mol (10264.5089 without restraints) Performing minimization step: 1395. Total energy = 10267.1450 kcal/mol (10259.9135 without restraints) Performing minimization step: 1396. Total energy = 10262.5528 kcal/mol (10255.3231 without restraints) Performing minimization step: 1397. Total energy = 10257.9659 kcal/mol (10250.7384 without restraints) Performing minimization step: 1398. Total energy = 10253.3841 kcal/mol (10246.1583 without restraints) Performing minimization step: 1399. Total energy = 10248.8076 kcal/mol (10241.5837 without restraints) Performing minimization step: 1400. Total energy = 10244.2359 kcal/mol (10237.0139 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 10239.6694 kcal/mol (10232.4493 without restraints) Performing minimization step: 1402. Total energy = 10235.1076 kcal/mol (10227.8893 without restraints) Performing minimization step: 1403. Total energy = 10230.5508 kcal/mol (10223.3345 without restraints) Performing minimization step: 1404. Total energy = 10225.9996 kcal/mol (10218.7850 without restraints) Performing minimization step: 1405. Total energy = 10221.4535 kcal/mol (10214.2410 without restraints) Performing minimization step: 1406. Total energy = 10216.9127 kcal/mol (10209.7020 without restraints) Performing minimization step: 1407. Total energy = 10212.3769 kcal/mol (10205.1681 without restraints) Performing minimization step: 1408. Total energy = 10207.8461 kcal/mol (10200.6390 without restraints) Performing minimization step: 1409. Total energy = 10203.3208 kcal/mol (10196.1157 without restraints) Performing minimization step: 1410. Total energy = 10198.8002 kcal/mol (10191.5969 without restraints) Performing minimization step: 1411. Total energy = 10194.2846 kcal/mol (10187.0833 without restraints) Performing minimization step: 1412. Total energy = 10189.7740 kcal/mol (10182.5746 without restraints) Performing minimization step: 1413. Total energy = 10185.2694 kcal/mol (10178.0720 without restraints) Performing minimization step: 1414. Total energy = 10180.7691 kcal/mol (10173.5735 without restraints) Performing minimization step: 1415. Total energy = 10176.2738 kcal/mol (10169.0801 without restraints) Performing minimization step: 1416. Total energy = 10171.7837 kcal/mol (10164.5920 without restraints) Performing minimization step: 1417. Total energy = 10167.2988 kcal/mol (10160.1089 without restraints) Performing minimization step: 1418. Total energy = 10162.8184 kcal/mol (10155.6303 without restraints) Performing minimization step: 1419. Total energy = 10158.3433 kcal/mol (10151.1573 without restraints) Performing minimization step: 1420. Total energy = 10153.8734 kcal/mol (10146.6892 without restraints) Performing minimization step: 1421. Total energy = 10149.4081 kcal/mol (10142.2257 without restraints) Performing minimization step: 1422. Total energy = 10144.9479 kcal/mol (10137.7675 without restraints) Performing minimization step: 1423. Total energy = 10140.4928 kcal/mol (10133.3142 without restraints) Performing minimization step: 1424. Total energy = 10136.0425 kcal/mol (10128.8658 without restraints) Performing minimization step: 1425. Total energy = 10131.5974 kcal/mol (10124.4226 without restraints) Performing minimization step: 1426. Total energy = 10127.1579 kcal/mol (10119.9849 without restraints) Performing minimization step: 1427. Total energy = 10122.7223 kcal/mol (10115.5511 without restraints) Performing minimization step: 1428. Total energy = 10118.2917 kcal/mol (10111.1225 without restraints) Performing minimization step: 1429. Total energy = 10113.8660 kcal/mol (10106.6988 without restraints) Performing minimization step: 1430. Total energy = 10109.4453 kcal/mol (10102.2799 without restraints) Performing minimization step: 1431. Total energy = 10105.0294 kcal/mol (10097.8658 without restraints) Performing minimization step: 1432. Total energy = 10100.6186 kcal/mol (10093.4570 without restraints) Performing minimization step: 1433. Total energy = 10096.2129 kcal/mol (10089.0531 without restraints) Performing minimization step: 1434. Total energy = 10091.8121 kcal/mol (10084.6543 without restraints) Performing minimization step: 1435. Total energy = 10087.4161 kcal/mol (10080.2601 without restraints) Performing minimization step: 1436. Total energy = 10083.0252 kcal/mol (10075.8711 without restraints) Performing minimization step: 1437. Total energy = 10078.6389 kcal/mol (10071.4867 without restraints) Performing minimization step: 1438. Total energy = 10074.2575 kcal/mol (10067.1072 without restraints) Performing minimization step: 1439. Total energy = 10069.8810 kcal/mol (10062.7325 without restraints) Performing minimization step: 1440. Total energy = 10065.5094 kcal/mol (10058.3628 without restraints) Performing minimization step: 1441. Total energy = 10061.1426 kcal/mol (10053.9979 without restraints) Performing minimization step: 1442. Total energy = 10056.7806 kcal/mol (10049.6378 without restraints) Performing minimization step: 1443. Total energy = 10052.4238 kcal/mol (10045.2828 without restraints) Performing minimization step: 1444. Total energy = 10048.0713 kcal/mol (10040.9322 without restraints) Performing minimization step: 1445. Total energy = 10043.7238 kcal/mol (10036.5866 without restraints) Performing minimization step: 1446. Total energy = 10039.3810 kcal/mol (10032.2457 without restraints) Performing minimization step: 1447. Total energy = 10035.0431 kcal/mol (10027.9097 without restraints) Performing minimization step: 1448. Total energy = 10030.7099 kcal/mol (10023.5783 without restraints) Performing minimization step: 1449. Total energy = 10026.3821 kcal/mol (10019.2524 without restraints) Performing minimization step: 1450. Total energy = 10022.0588 kcal/mol (10014.9310 without restraints) Performing minimization step: 1451. Total energy = 10017.7403 kcal/mol (10010.6144 without restraints) Performing minimization step: 1452. Total energy = 10013.4264 kcal/mol (10006.3024 without restraints) Performing minimization step: 1453. Total energy = 10009.1177 kcal/mol (10001.9955 without restraints) Performing minimization step: 1454. Total energy = 10004.8131 kcal/mol (9997.6928 without restraints) Performing minimization step: 1455. Total energy = 10000.5135 kcal/mol (9993.3950 without restraints) Performing minimization step: 1456. Total energy = 9996.2189 kcal/mol (9989.1023 without restraints) Performing minimization step: 1457. Total energy = 9991.9289 kcal/mol (9984.8142 without restraints) Performing minimization step: 1458. Total energy = 9987.6439 kcal/mol (9980.5311 without restraints) Performing minimization step: 1459. Total energy = 9983.3632 kcal/mol (9976.2523 without restraints) Performing minimization step: 1460. Total energy = 9979.0873 kcal/mol (9971.9782 without restraints) Performing minimization step: 1461. Total energy = 9974.8160 kcal/mol (9967.7088 without restraints) Performing minimization step: 1462. Total energy = 9970.5498 kcal/mol (9963.4444 without restraints) Performing minimization step: 1463. Total energy = 9966.2881 kcal/mol (9959.1846 without restraints) Performing minimization step: 1464. Total energy = 9962.0304 kcal/mol (9954.9288 without restraints) Performing minimization step: 1465. Total energy = 9957.7779 kcal/mol (9950.6782 without restraints) Performing minimization step: 1466. Total energy = 9953.5300 kcal/mol (9946.4321 without restraints) Performing minimization step: 1467. Total energy = 9949.2868 kcal/mol (9942.1908 without restraints) Performing minimization step: 1468. Total energy = 9945.0488 kcal/mol (9937.9549 without restraints) Performing minimization step: 1469. Total energy = 9940.8149 kcal/mol (9933.7226 without restraints) Performing minimization step: 1470. Total energy = 9936.5861 kcal/mol (9929.4957 without restraints) Performing minimization step: 1471. Total energy = 9932.3618 kcal/mol (9925.2735 without restraints) Performing minimization step: 1472. Total energy = 9928.1425 kcal/mol (9921.0558 without restraints) Performing minimization step: 1473. Total energy = 9923.9271 kcal/mol (9916.8423 without restraints) Performing minimization step: 1474. Total energy = 9919.7165 kcal/mol (9912.6337 without restraints) Performing minimization step: 1475. Total energy = 9915.5109 kcal/mol (9908.4298 without restraints) Performing minimization step: 1476. Total energy = 9911.3095 kcal/mol (9904.2303 without restraints) Performing minimization step: 1477. Total energy = 9907.1126 kcal/mol (9900.0353 without restraints) Performing minimization step: 1478. Total energy = 9902.9201 kcal/mol (9895.8445 without restraints) Performing minimization step: 1479. Total energy = 9898.7323 kcal/mol (9891.6587 without restraints) Performing minimization step: 1480. Total energy = 9894.5490 kcal/mol (9887.4772 without restraints) Performing minimization step: 1481. Total energy = 9890.3706 kcal/mol (9883.3007 without restraints) Performing minimization step: 1482. Total energy = 9886.1970 kcal/mol (9879.1290 without restraints) Performing minimization step: 1483. Total energy = 9882.0275 kcal/mol (9874.9613 without restraints) Performing minimization step: 1484. Total energy = 9877.8626 kcal/mol (9870.7983 without restraints) Performing minimization step: 1485. Total energy = 9873.7021 kcal/mol (9866.6397 without restraints) Performing minimization step: 1486. Total energy = 9869.5462 kcal/mol (9862.4855 without restraints) Performing minimization step: 1487. Total energy = 9865.3948 kcal/mol (9858.3363 without restraints) Performing minimization step: 1488. Total energy = 9861.2483 kcal/mol (9854.1915 without restraints) Performing minimization step: 1489. Total energy = 9857.1061 kcal/mol (9850.0511 without restraints) Performing minimization step: 1490. Total energy = 9852.9685 kcal/mol (9845.9155 without restraints) Performing minimization step: 1491. Total energy = 9848.8353 kcal/mol (9841.7841 without restraints) Performing minimization step: 1492. Total energy = 9844.7071 kcal/mol (9837.6579 without restraints) Performing minimization step: 1493. Total energy = 9840.5831 kcal/mol (9833.5355 without restraints) Performing minimization step: 1494. Total energy = 9836.4636 kcal/mol (9829.4177 without restraints) Performing minimization step: 1495. Total energy = 9832.3482 kcal/mol (9825.3043 without restraints) Performing minimization step: 1496. Total energy = 9828.2374 kcal/mol (9821.1954 without restraints) Performing minimization step: 1497. Total energy = 9824.1313 kcal/mol (9817.0913 without restraints) Performing minimization step: 1498. Total energy = 9820.0298 kcal/mol (9812.9915 without restraints) Performing minimization step: 1499. Total energy = 9815.9325 kcal/mol (9808.8961 without restraints) Performing minimization step: 1500. Total energy = 9811.8397 kcal/mol (9804.8051 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 9807.7515 kcal/mol (9800.7188 without restraints) Performing minimization step: 1502. Total energy = 9803.6674 kcal/mol (9796.6365 without restraints) Performing minimization step: 1503. Total energy = 9799.5879 kcal/mol (9792.5589 without restraints) Performing minimization step: 1504. Total energy = 9795.5129 kcal/mol (9788.4858 without restraints) Performing minimization step: 1505. Total energy = 9791.4421 kcal/mol (9784.4168 without restraints) Performing minimization step: 1506. Total energy = 9787.3760 kcal/mol (9780.3524 without restraints) Performing minimization step: 1507. Total energy = 9783.3142 kcal/mol (9776.2926 without restraints) Performing minimization step: 1508. Total energy = 9779.2567 kcal/mol (9772.2369 without restraints) Performing minimization step: 1509. Total energy = 9775.2035 kcal/mol (9768.1855 without restraints) Performing minimization step: 1510. Total energy = 9771.1545 kcal/mol (9764.1385 without restraints) Performing minimization step: 1511. Total energy = 9767.1106 kcal/mol (9760.0964 without restraints) Performing minimization step: 1512. Total energy = 9763.0704 kcal/mol (9756.0581 without restraints) Performing minimization step: 1513. Total energy = 9759.0348 kcal/mol (9752.0243 without restraints) Performing minimization step: 1514. Total energy = 9755.0033 kcal/mol (9747.9947 without restraints) Performing minimization step: 1515. Total energy = 9750.9759 kcal/mol (9743.9691 without restraints) Performing minimization step: 1516. Total energy = 9746.9531 kcal/mol (9739.9482 without restraints) Performing minimization step: 1517. Total energy = 9742.9345 kcal/mol (9735.9314 without restraints) Performing minimization step: 1518. Total energy = 9738.9199 kcal/mol (9731.9187 without restraints) Performing minimization step: 1519. Total energy = 9734.9100 kcal/mol (9727.9106 without restraints) Performing minimization step: 1520. Total energy = 9730.9046 kcal/mol (9723.9070 without restraints) Performing minimization step: 1521. Total energy = 9726.9033 kcal/mol (9719.9076 without restraints) Performing minimization step: 1522. Total energy = 9722.9066 kcal/mol (9715.9127 without restraints) Performing minimization step: 1523. Total energy = 9718.9137 kcal/mol (9711.9217 without restraints) Performing minimization step: 1524. Total energy = 9714.9253 kcal/mol (9707.9351 without restraints) Performing minimization step: 1525. Total energy = 9710.9411 kcal/mol (9703.9528 without restraints) Performing minimization step: 1526. Total energy = 9706.9614 kcal/mol (9699.9750 without restraints) Performing minimization step: 1527. Total energy = 9702.9860 kcal/mol (9696.0014 without restraints) Performing minimization step: 1528. Total energy = 9699.0145 kcal/mol (9692.0318 without restraints) Performing minimization step: 1529. Total energy = 9695.0475 kcal/mol (9688.0665 without restraints) Performing minimization step: 1530. Total energy = 9691.0841 kcal/mol (9684.1050 without restraints) Performing minimization step: 1531. Total energy = 9687.1255 kcal/mol (9680.1483 without restraints) Performing minimization step: 1532. Total energy = 9683.1711 kcal/mol (9676.1957 without restraints) Performing minimization step: 1533. Total energy = 9679.2210 kcal/mol (9672.2474 without restraints) Performing minimization step: 1534. Total energy = 9675.2750 kcal/mol (9668.3032 without restraints) Performing minimization step: 1535. Total energy = 9671.3333 kcal/mol (9664.3636 without restraints) Performing minimization step: 1536. Total energy = 9667.3965 kcal/mol (9660.4286 without restraints) Performing minimization step: 1537. Total energy = 9663.4635 kcal/mol (9656.4973 without restraints) Performing minimization step: 1538. Total energy = 9659.5343 kcal/mol (9652.5699 without restraints) Performing minimization step: 1539. Total energy = 9655.6089 kcal/mol (9648.6463 without restraints) Performing minimization step: 1540. Total energy = 9651.6881 kcal/mol (9644.7275 without restraints) Performing minimization step: 1541. Total energy = 9647.7715 kcal/mol (9640.8127 without restraints) Performing minimization step: 1542. Total energy = 9643.8592 kcal/mol (9636.9022 without restraints) Performing minimization step: 1543. Total energy = 9639.9508 kcal/mol (9632.9956 without restraints) Performing minimization step: 1544. Total energy = 9636.0466 kcal/mol (9629.0932 without restraints) Performing minimization step: 1545. Total energy = 9632.1469 kcal/mol (9625.1954 without restraints) Performing minimization step: 1546. Total energy = 9628.2512 kcal/mol (9621.3017 without restraints) Performing minimization step: 1547. Total energy = 9624.3599 kcal/mol (9617.4121 without restraints) Performing minimization step: 1548. Total energy = 9620.4723 kcal/mol (9613.5263 without restraints) Performing minimization step: 1549. Total energy = 9616.5888 kcal/mol (9609.6446 without restraints) Performing minimization step: 1550. Total energy = 9612.7093 kcal/mol (9605.7670 without restraints) Performing minimization step: 1551. Total energy = 9608.8339 kcal/mol (9601.8933 without restraints) Performing minimization step: 1552. Total energy = 9604.9625 kcal/mol (9598.0239 without restraints) Performing minimization step: 1553. Total energy = 9601.0955 kcal/mol (9594.1587 without restraints) Performing minimization step: 1554. Total energy = 9597.2326 kcal/mol (9590.2976 without restraints) Performing minimization step: 1555. Total energy = 9593.3736 kcal/mol (9586.4404 without restraints) Performing minimization step: 1556. Total energy = 9589.5186 kcal/mol (9582.5873 without restraints) Performing minimization step: 1557. Total energy = 9585.6677 kcal/mol (9578.7382 without restraints) Performing minimization step: 1558. Total energy = 9581.8210 kcal/mol (9574.8934 without restraints) Performing minimization step: 1559. Total energy = 9577.9783 kcal/mol (9571.0525 without restraints) Performing minimization step: 1560. Total energy = 9574.1395 kcal/mol (9567.2155 without restraints) Performing minimization step: 1561. Total energy = 9570.3048 kcal/mol (9563.3826 without restraints) Performing minimization step: 1562. Total energy = 9566.4740 kcal/mol (9559.5536 without restraints) Performing minimization step: 1563. Total energy = 9562.6474 kcal/mol (9555.7289 without restraints) Performing minimization step: 1564. Total energy = 9558.8248 kcal/mol (9551.9081 without restraints) Performing minimization step: 1565. Total energy = 9555.0058 kcal/mol (9548.0909 without restraints) Performing minimization step: 1566. Total energy = 9551.1912 kcal/mol (9544.2782 without restraints) Performing minimization step: 1567. Total energy = 9547.3807 kcal/mol (9540.4694 without restraints) Performing minimization step: 1568. Total energy = 9543.5742 kcal/mol (9536.6649 without restraints) Performing minimization step: 1569. Total energy = 9539.7720 kcal/mol (9532.8644 without restraints) Performing minimization step: 1570. Total energy = 9535.9731 kcal/mol (9529.0673 without restraints) Performing minimization step: 1571. Total energy = 9532.1782 kcal/mol (9525.2744 without restraints) Performing minimization step: 1572. Total energy = 9528.3875 kcal/mol (9521.4854 without restraints) Performing minimization step: 1573. Total energy = 9524.6005 kcal/mol (9517.7001 without restraints) Performing minimization step: 1574. Total energy = 9520.8175 kcal/mol (9513.9191 without restraints) Performing minimization step: 1575. Total energy = 9517.0388 kcal/mol (9510.1421 without restraints) Performing minimization step: 1576. Total energy = 9513.2638 kcal/mol (9506.3690 without restraints) Performing minimization step: 1577. Total energy = 9509.4929 kcal/mol (9502.6000 without restraints) Performing minimization step: 1578. Total energy = 9505.7259 kcal/mol (9498.8348 without restraints) Performing minimization step: 1579. Total energy = 9501.9624 kcal/mol (9495.0731 without restraints) Performing minimization step: 1580. Total energy = 9498.2033 kcal/mol (9491.3159 without restraints) Performing minimization step: 1581. Total energy = 9494.4478 kcal/mol (9487.5620 without restraints) Performing minimization step: 1582. Total energy = 9490.6967 kcal/mol (9483.8129 without restraints) Performing minimization step: 1583. Total energy = 9486.9491 kcal/mol (9480.0672 without restraints) Performing minimization step: 1584. Total energy = 9483.2056 kcal/mol (9476.3254 without restraints) Performing minimization step: 1585. Total energy = 9479.4658 kcal/mol (9472.5874 without restraints) Performing minimization step: 1586. Total energy = 9475.7299 kcal/mol (9468.8534 without restraints) Performing minimization step: 1587. Total energy = 9471.9981 kcal/mol (9465.1234 without restraints) Performing minimization step: 1588. Total energy = 9468.2702 kcal/mol (9461.3973 without restraints) Performing minimization step: 1589. Total energy = 9464.5457 kcal/mol (9457.6747 without restraints) Performing minimization step: 1590. Total energy = 9460.8253 kcal/mol (9453.9560 without restraints) Performing minimization step: 1591. Total energy = 9457.1086 kcal/mol (9450.2411 without restraints) Performing minimization step: 1592. Total energy = 9453.3958 kcal/mol (9446.5301 without restraints) Performing minimization step: 1593. Total energy = 9449.6867 kcal/mol (9442.8229 without restraints) Performing minimization step: 1594. Total energy = 9445.9815 kcal/mol (9439.1195 without restraints) Performing minimization step: 1595. Total energy = 9442.2797 kcal/mol (9435.4195 without restraints) Performing minimization step: 1596. Total energy = 9438.5822 kcal/mol (9431.7238 without restraints) Performing minimization step: 1597. Total energy = 9434.8880 kcal/mol (9428.0314 without restraints) Performing minimization step: 1598. Total energy = 9431.1981 kcal/mol (9424.3433 without restraints) Performing minimization step: 1599. Total energy = 9427.5119 kcal/mol (9420.6589 without restraints) Performing minimization step: 1600. Total energy = 9423.8297 kcal/mol (9416.9785 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 9420.1511 kcal/mol (9413.3017 without restraints) Performing minimization step: 1602. Total energy = 9416.4764 kcal/mol (9409.6287 without restraints) Performing minimization step: 1603. Total energy = 9412.8054 kcal/mol (9405.9597 without restraints) Performing minimization step: 1604. Total energy = 9409.1380 kcal/mol (9402.2941 without restraints) Performing minimization step: 1605. Total energy = 9405.4744 kcal/mol (9398.6323 without restraints) Performing minimization step: 1606. Total energy = 9401.8144 kcal/mol (9394.9741 without restraints) Performing minimization step: 1607. Total energy = 9398.1583 kcal/mol (9391.3198 without restraints) Performing minimization step: 1608. Total energy = 9394.5062 kcal/mol (9387.6694 without restraints) Performing minimization step: 1609. Total energy = 9390.8574 kcal/mol (9384.0226 without restraints) Performing minimization step: 1610. Total energy = 9387.2128 kcal/mol (9380.3797 without restraints) Performing minimization step: 1611. Total energy = 9383.5715 kcal/mol (9376.7402 without restraints) Performing minimization step: 1612. Total energy = 9379.9342 kcal/mol (9373.1050 without restraints) Performing minimization step: 1613. Total energy = 9376.3006 kcal/mol (9369.4729 without restraints) Performing minimization step: 1614. Total energy = 9372.6705 kcal/mol (9365.8446 without restraints) Performing minimization step: 1615. Total energy = 9369.0444 kcal/mol (9362.2203 without restraints) Performing minimization step: 1616. Total energy = 9365.4217 kcal/mol (9358.5995 without restraints) Performing minimization step: 1617. Total energy = 9361.8026 kcal/mol (9354.9821 without restraints) Performing minimization step: 1618. Total energy = 9358.1873 kcal/mol (9351.3686 without restraints) Performing minimization step: 1619. Total energy = 9354.5760 kcal/mol (9347.7593 without restraints) Performing minimization step: 1620. Total energy = 9350.9680 kcal/mol (9344.1530 without restraints) Performing minimization step: 1621. Total energy = 9347.3638 kcal/mol (9340.5506 without restraints) Performing minimization step: 1622. Total energy = 9343.7632 kcal/mol (9336.9517 without restraints) Performing minimization step: 1623. Total energy = 9340.1659 kcal/mol (9333.3563 without restraints) Performing minimization step: 1624. Total energy = 9336.5720 kcal/mol (9329.7642 without restraints) Performing minimization step: 1625. Total energy = 9332.9819 kcal/mol (9326.1759 without restraints) Performing minimization step: 1626. Total energy = 9329.3955 kcal/mol (9322.5913 without restraints) Performing minimization step: 1627. Total energy = 9325.8132 kcal/mol (9319.0107 without restraints) Performing minimization step: 1628. Total energy = 9322.2341 kcal/mol (9315.4335 without restraints) Performing minimization step: 1629. Total energy = 9318.6585 kcal/mol (9311.8597 without restraints) Performing minimization step: 1630. Total energy = 9315.0867 kcal/mol (9308.2896 without restraints) Performing minimization step: 1631. Total energy = 9311.5182 kcal/mol (9304.7230 without restraints) Performing minimization step: 1632. Total energy = 9307.9535 kcal/mol (9301.1600 without restraints) Performing minimization step: 1633. Total energy = 9304.3920 kcal/mol (9297.6003 without restraints) Performing minimization step: 1634. Total energy = 9300.8340 kcal/mol (9294.0441 without restraints) Performing minimization step: 1635. Total energy = 9297.2807 kcal/mol (9290.4927 without restraints) Performing minimization step: 1636. Total energy = 9293.7303 kcal/mol (9286.9441 without restraints) Performing minimization step: 1637. Total energy = 9290.1832 kcal/mol (9283.3988 without restraints) Performing minimization step: 1638. Total energy = 9286.6398 kcal/mol (9279.8571 without restraints) Performing minimization step: 1639. Total energy = 9283.1000 kcal/mol (9276.3191 without restraints) Performing minimization step: 1640. Total energy = 9279.5635 kcal/mol (9272.7844 without restraints) Performing minimization step: 1641. Total energy = 9276.0307 kcal/mol (9269.2534 without restraints) Performing minimization step: 1642. Total energy = 9272.5011 kcal/mol (9265.7256 without restraints) Performing minimization step: 1643. Total energy = 9268.9749 kcal/mol (9262.2011 without restraints) Performing minimization step: 1644. Total energy = 9265.4521 kcal/mol (9258.6803 without restraints) Performing minimization step: 1645. Total energy = 9261.9332 kcal/mol (9255.1630 without restraints) Performing minimization step: 1646. Total energy = 9258.4180 kcal/mol (9251.6497 without restraints) Performing minimization step: 1647. Total energy = 9254.9060 kcal/mol (9248.1394 without restraints) Performing minimization step: 1648. Total energy = 9251.3970 kcal/mol (9244.6322 without restraints) Performing minimization step: 1649. Total energy = 9247.8921 kcal/mol (9241.1291 without restraints) Performing minimization step: 1650. Total energy = 9244.3905 kcal/mol (9237.6292 without restraints) Performing minimization step: 1651. Total energy = 9240.8920 kcal/mol (9234.1326 without restraints) Performing minimization step: 1652. Total energy = 9237.3972 kcal/mol (9230.6393 without restraints) Performing minimization step: 1653. Total energy = 9233.9057 kcal/mol (9227.1498 without restraints) Performing minimization step: 1654. Total energy = 9230.4178 kcal/mol (9223.6637 without restraints) Performing minimization step: 1655. Total energy = 9226.9333 kcal/mol (9220.1810 without restraints) Performing minimization step: 1656. Total energy = 9223.4523 kcal/mol (9216.7017 without restraints) Performing minimization step: 1657. Total energy = 9219.9744 kcal/mol (9213.2256 without restraints) Performing minimization step: 1658. Total energy = 9216.5003 kcal/mol (9209.7533 without restraints) Performing minimization step: 1659. Total energy = 9213.0292 kcal/mol (9206.2840 without restraints) Performing minimization step: 1660. Total energy = 9209.5621 kcal/mol (9202.8188 without restraints) Performing minimization step: 1661. Total energy = 9206.0982 kcal/mol (9199.3567 without restraints) Performing minimization step: 1662. Total energy = 9202.6378 kcal/mol (9195.8979 without restraints) Performing minimization step: 1663. Total energy = 9199.1805 kcal/mol (9192.4424 without restraints) Performing minimization step: 1664. Total energy = 9195.7267 kcal/mol (9188.9904 without restraints) Performing minimization step: 1665. Total energy = 9192.2760 kcal/mol (9185.5416 without restraints) Performing minimization step: 1666. Total energy = 9188.8290 kcal/mol (9182.0965 without restraints) Performing minimization step: 1667. Total energy = 9185.3854 kcal/mol (9178.6544 without restraints) Performing minimization step: 1668. Total energy = 9181.9446 kcal/mol (9175.2153 without restraints) Performing minimization step: 1669. Total energy = 9178.5073 kcal/mol (9171.7799 without restraints) Performing minimization step: 1670. Total energy = 9175.0733 kcal/mol (9168.3477 without restraints) Performing minimization step: 1671. Total energy = 9171.6427 kcal/mol (9164.9188 without restraints) Performing minimization step: 1672. Total energy = 9168.2154 kcal/mol (9161.4933 without restraints) Performing minimization step: 1673. Total energy = 9164.7915 kcal/mol (9158.0711 without restraints) Performing minimization step: 1674. Total energy = 9161.3709 kcal/mol (9154.6522 without restraints) Performing minimization step: 1675. Total energy = 9157.9534 kcal/mol (9151.2366 without restraints) Performing minimization step: 1676. Total energy = 9154.5391 kcal/mol (9147.8240 without restraints) Performing minimization step: 1677. Total energy = 9151.1280 kcal/mol (9144.4147 without restraints) Performing minimization step: 1678. Total energy = 9147.7205 kcal/mol (9141.0091 without restraints) Performing minimization step: 1679. Total energy = 9144.3163 kcal/mol (9137.6066 without restraints) Performing minimization step: 1680. Total energy = 9140.9153 kcal/mol (9134.2073 without restraints) Performing minimization step: 1681. Total energy = 9137.5175 kcal/mol (9130.8113 without restraints) Performing minimization step: 1682. Total energy = 9134.1232 kcal/mol (9127.4187 without restraints) Performing minimization step: 1683. Total energy = 9130.7319 kcal/mol (9124.0293 without restraints) Performing minimization step: 1684. Total energy = 9127.3439 kcal/mol (9120.6431 without restraints) Performing minimization step: 1685. Total energy = 9123.9594 kcal/mol (9117.2603 without restraints) Performing minimization step: 1686. Total energy = 9120.5777 kcal/mol (9113.8804 without restraints) Performing minimization step: 1687. Total energy = 9117.1996 kcal/mol (9110.5040 without restraints) Performing minimization step: 1688. Total energy = 9113.8245 kcal/mol (9107.1306 without restraints) Performing minimization step: 1689. Total energy = 9110.4527 kcal/mol (9103.7607 without restraints) Performing minimization step: 1690. Total energy = 9107.0839 kcal/mol (9100.3935 without restraints) Performing minimization step: 1691. Total energy = 9103.7185 kcal/mol (9097.0299 without restraints) Performing minimization step: 1692. Total energy = 9100.3559 kcal/mol (9093.6691 without restraints) Performing minimization step: 1693. Total energy = 9096.9966 kcal/mol (9090.3116 without restraints) Performing minimization step: 1694. Total energy = 9093.6407 kcal/mol (9086.9574 without restraints) Performing minimization step: 1695. Total energy = 9090.2877 kcal/mol (9083.6062 without restraints) Performing minimization step: 1696. Total energy = 9086.9381 kcal/mol (9080.2583 without restraints) Performing minimization step: 1697. Total energy = 9083.5915 kcal/mol (9076.9135 without restraints) Performing minimization step: 1698. Total energy = 9080.2482 kcal/mol (9073.5719 without restraints) Performing minimization step: 1699. Total energy = 9076.9079 kcal/mol (9070.2334 without restraints) Performing minimization step: 1700. Total energy = 9073.5710 kcal/mol (9066.8983 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 9070.2366 kcal/mol (9063.5657 without restraints) Performing minimization step: 1702. Total energy = 9066.9065 kcal/mol (9060.2372 without restraints) Performing minimization step: 1703. Total energy = 9063.5786 kcal/mol (9056.9111 without restraints) Performing minimization step: 1704. Total energy = 9060.2539 kcal/mol (9053.5882 without restraints) Performing minimization step: 1705. Total energy = 9056.9324 kcal/mol (9050.2684 without restraints) Performing minimization step: 1706. Total energy = 9053.6145 kcal/mol (9046.9522 without restraints) Performing minimization step: 1707. Total energy = 9050.2991 kcal/mol (9043.6387 without restraints) Performing minimization step: 1708. Total energy = 9046.9870 kcal/mol (9040.3286 without restraints) Performing minimization step: 1709. Total energy = 9043.6781 kcal/mol (9037.0210 without restraints) Performing minimization step: 1710. Total energy = 9040.3725 kcal/mol (9033.7172 without restraints) Performing minimization step: 1711. Total energy = 9037.0698 kcal/mol (9030.4163 without restraints) Performing minimization step: 1712. Total energy = 9033.7697 kcal/mol (9027.1180 without restraints) Performing minimization step: 1713. Total energy = 9030.4727 kcal/mol (9023.8227 without restraints) Performing minimization step: 1714. Total energy = 9027.1788 kcal/mol (9020.5306 without restraints) Performing minimization step: 1715. Total energy = 9023.8879 kcal/mol (9017.2413 without restraints) Performing minimization step: 1716. Total energy = 9020.5999 kcal/mol (9013.9551 without restraints) Performing minimization step: 1717. Total energy = 9017.3157 kcal/mol (9010.6727 without restraints) Performing minimization step: 1718. Total energy = 9014.0342 kcal/mol (9007.3930 without restraints) Performing minimization step: 1719. Total energy = 9010.7548 kcal/mol (9004.1152 without restraints) Performing minimization step: 1720. Total energy = 9007.4787 kcal/mol (9000.8408 without restraints) Performing minimization step: 1721. Total energy = 9004.2058 kcal/mol (8997.5699 without restraints) Performing minimization step: 1722. Total energy = 9000.9358 kcal/mol (8994.3015 without restraints) Performing minimization step: 1723. Total energy = 8997.6691 kcal/mol (8991.0366 without restraints) Performing minimization step: 1724. Total energy = 8994.4050 kcal/mol (8987.7741 without restraints) Performing minimization step: 1725. Total energy = 8991.1442 kcal/mol (8984.5151 without restraints) Performing minimization step: 1726. Total energy = 8987.8862 kcal/mol (8981.2589 without restraints) Performing minimization step: 1727. Total energy = 8984.6312 kcal/mol (8978.0056 without restraints) Performing minimization step: 1728. Total energy = 8981.3792 kcal/mol (8974.7553 without restraints) Performing minimization step: 1729. Total energy = 8978.1300 kcal/mol (8971.5079 without restraints) Performing minimization step: 1730. Total energy = 8974.8837 kcal/mol (8968.2633 without restraints) Performing minimization step: 1731. Total energy = 8971.6405 kcal/mol (8965.0218 without restraints) Performing minimization step: 1732. Total energy = 8968.4005 kcal/mol (8961.7836 without restraints) Performing minimization step: 1733. Total energy = 8965.1629 kcal/mol (8958.5478 without restraints) Performing minimization step: 1734. Total energy = 8961.9287 kcal/mol (8955.3152 without restraints) Performing minimization step: 1735. Total energy = 8958.6970 kcal/mol (8952.0853 without restraints) Performing minimization step: 1736. Total energy = 8955.4682 kcal/mol (8948.8582 without restraints) Performing minimization step: 1737. Total energy = 8952.2424 kcal/mol (8945.6341 without restraints) Performing minimization step: 1738. Total energy = 8949.0194 kcal/mol (8942.4127 without restraints) Performing minimization step: 1739. Total energy = 8945.7992 kcal/mol (8939.1943 without restraints) Performing minimization step: 1740. Total energy = 8942.5816 kcal/mol (8935.9785 without restraints) Performing minimization step: 1741. Total energy = 8939.3673 kcal/mol (8932.7659 without restraints) Performing minimization step: 1742. Total energy = 8936.1557 kcal/mol (8929.5559 without restraints) Performing minimization step: 1743. Total energy = 8932.9472 kcal/mol (8926.3493 without restraints) Performing minimization step: 1744. Total energy = 8929.7415 kcal/mol (8923.1453 without restraints) Performing minimization step: 1745. Total energy = 8926.5387 kcal/mol (8919.9442 without restraints) Performing minimization step: 1746. Total energy = 8923.3386 kcal/mol (8916.7459 without restraints) Performing minimization step: 1747. Total energy = 8920.1417 kcal/mol (8913.5508 without restraints) Performing minimization step: 1748. Total energy = 8916.9476 kcal/mol (8910.3583 without restraints) Performing minimization step: 1749. Total energy = 8913.7560 kcal/mol (8907.1684 without restraints) Performing minimization step: 1750. Total energy = 8910.5672 kcal/mol (8903.9814 without restraints) Performing minimization step: 1751. Total energy = 8907.3812 kcal/mol (8900.7970 without restraints) Performing minimization step: 1752. Total energy = 8904.1984 kcal/mol (8897.6160 without restraints) Performing minimization step: 1753. Total energy = 8901.0182 kcal/mol (8894.4375 without restraints) Performing minimization step: 1754. Total energy = 8897.8406 kcal/mol (8891.2616 without restraints) Performing minimization step: 1755. Total energy = 8894.6658 kcal/mol (8888.0885 without restraints) Performing minimization step: 1756. Total energy = 8891.4935 kcal/mol (8884.9178 without restraints) Performing minimization step: 1757. Total energy = 8888.3241 kcal/mol (8881.7500 without restraints) Performing minimization step: 1758. Total energy = 8885.1574 kcal/mol (8878.5853 without restraints) Performing minimization step: 1759. Total energy = 8881.9937 kcal/mol (8875.4233 without restraints) Performing minimization step: 1760. Total energy = 8878.8328 kcal/mol (8872.2640 without restraints) Performing minimization step: 1761. Total energy = 8875.6746 kcal/mol (8869.1076 without restraints) Performing minimization step: 1762. Total energy = 8872.5193 kcal/mol (8865.9540 without restraints) Performing minimization step: 1763. Total energy = 8869.3665 kcal/mol (8862.8029 without restraints) Performing minimization step: 1764. Total energy = 8866.2165 kcal/mol (8859.6545 without restraints) Performing minimization step: 1765. Total energy = 8863.0690 kcal/mol (8856.5089 without restraints) Performing minimization step: 1766. Total energy = 8859.9245 kcal/mol (8853.3661 without restraints) Performing minimization step: 1767. Total energy = 8856.7822 kcal/mol (8850.2254 without restraints) Performing minimization step: 1768. Total energy = 8853.6428 kcal/mol (8847.0878 without restraints) Performing minimization step: 1769. Total energy = 8850.5064 kcal/mol (8843.9532 without restraints) Performing minimization step: 1770. Total energy = 8847.3728 kcal/mol (8840.8212 without restraints) Performing minimization step: 1771. Total energy = 8844.2417 kcal/mol (8837.6918 without restraints) Performing minimization step: 1772. Total energy = 8841.1136 kcal/mol (8834.5653 without restraints) Performing minimization step: 1773. Total energy = 8837.9874 kcal/mol (8831.4409 without restraints) Performing minimization step: 1774. Total energy = 8834.8640 kcal/mol (8828.3192 without restraints) Performing minimization step: 1775. Total energy = 8831.7435 kcal/mol (8825.2004 without restraints) Performing minimization step: 1776. Total energy = 8828.6258 kcal/mol (8822.0844 without restraints) Performing minimization step: 1777. Total energy = 8825.5106 kcal/mol (8818.9710 without restraints) Performing minimization step: 1778. Total energy = 8822.3981 kcal/mol (8815.8601 without restraints) Performing minimization step: 1779. Total energy = 8819.2879 kcal/mol (8812.7516 without restraints) Performing minimization step: 1780. Total energy = 8816.1805 kcal/mol (8809.6458 without restraints) Performing minimization step: 1781. Total energy = 8813.0756 kcal/mol (8806.5427 without restraints) Performing minimization step: 1782. Total energy = 8809.9734 kcal/mol (8803.4422 without restraints) Performing minimization step: 1783. Total energy = 8806.8738 kcal/mol (8800.3443 without restraints) Performing minimization step: 1784. Total energy = 8803.7770 kcal/mol (8797.2491 without restraints) Performing minimization step: 1785. Total energy = 8800.6827 kcal/mol (8794.1568 without restraints) Performing minimization step: 1786. Total energy = 8797.5910 kcal/mol (8791.0664 without restraints) Performing minimization step: 1787. Total energy = 8794.5018 kcal/mol (8787.9790 without restraints) Performing minimization step: 1788. Total energy = 8791.4152 kcal/mol (8784.8941 without restraints) Performing minimization step: 1789. Total energy = 8788.3311 kcal/mol (8781.8117 without restraints) Performing minimization step: 1790. Total energy = 8785.2499 kcal/mol (8778.7322 without restraints) Performing minimization step: 1791. Total energy = 8782.1710 kcal/mol (8775.6550 without restraints) Performing minimization step: 1792. Total energy = 8779.0945 kcal/mol (8772.5802 without restraints) Performing minimization step: 1793. Total energy = 8776.0213 kcal/mol (8769.5088 without restraints) Performing minimization step: 1794. Total energy = 8772.9500 kcal/mol (8766.4390 without restraints) Performing minimization step: 1795. Total energy = 8769.8811 kcal/mol (8763.3718 without restraints) Performing minimization step: 1796. Total energy = 8766.8147 kcal/mol (8760.3071 without restraints) Performing minimization step: 1797. Total energy = 8763.7508 kcal/mol (8757.2449 without restraints) Performing minimization step: 1798. Total energy = 8760.6894 kcal/mol (8754.1852 without restraints) Performing minimization step: 1799. Total energy = 8757.6310 kcal/mol (8751.1284 without restraints) Performing minimization step: 1800. Total energy = 8754.5746 kcal/mol (8748.0737 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 8751.5206 kcal/mol (8745.0214 without restraints) Performing minimization step: 1802. Total energy = 8748.4690 kcal/mol (8741.9716 without restraints) Performing minimization step: 1803. Total energy = 8745.4210 kcal/mol (8738.9252 without restraints) Performing minimization step: 1804. Total energy = 8742.3746 kcal/mol (8735.8805 without restraints) Performing minimization step: 1805. Total energy = 8739.3305 kcal/mol (8732.8379 without restraints) Performing minimization step: 1806. Total energy = 8736.2891 kcal/mol (8729.7983 without restraints) Performing minimization step: 1807. Total energy = 8733.2499 kcal/mol (8726.7608 without restraints) Performing minimization step: 1808. Total energy = 8730.2133 kcal/mol (8723.7259 without restraints) Performing minimization step: 1809. Total energy = 8727.1790 kcal/mol (8720.6933 without restraints) Performing minimization step: 1810. Total energy = 8724.1472 kcal/mol (8717.6632 without restraints) Performing minimization step: 1811. Total energy = 8721.1177 kcal/mol (8714.6353 without restraints) Performing minimization step: 1812. Total energy = 8718.0910 kcal/mol (8711.6102 without restraints) Performing minimization step: 1813. Total energy = 8715.0663 kcal/mol (8708.5872 without restraints) Performing minimization step: 1814. Total energy = 8712.0442 kcal/mol (8705.5668 without restraints) Performing minimization step: 1815. Total energy = 8709.0245 kcal/mol (8702.5487 without restraints) Performing minimization step: 1816. Total energy = 8706.0070 kcal/mol (8699.5329 without restraints) Performing minimization step: 1817. Total energy = 8702.9918 kcal/mol (8696.5193 without restraints) Performing minimization step: 1818. Total energy = 8699.9791 kcal/mol (8693.5084 without restraints) Performing minimization step: 1819. Total energy = 8696.9691 kcal/mol (8690.5002 without restraints) Performing minimization step: 1820. Total energy = 8693.9620 kcal/mol (8687.4947 without restraints) Performing minimization step: 1821. Total energy = 8690.9569 kcal/mol (8684.4911 without restraints) Performing minimization step: 1822. Total energy = 8687.9534 kcal/mol (8681.4893 without restraints) Performing minimization step: 1823. Total energy = 8684.9528 kcal/mol (8678.4904 without restraints) Performing minimization step: 1824. Total energy = 8681.9542 kcal/mol (8675.4936 without restraints) Performing minimization step: 1825. Total energy = 8678.9581 kcal/mol (8672.4989 without restraints) Performing minimization step: 1826. Total energy = 8675.9638 kcal/mol (8669.5064 without restraints) Performing minimization step: 1827. Total energy = 8672.9726 kcal/mol (8666.5168 without restraints) Performing minimization step: 1828. Total energy = 8669.9837 kcal/mol (8663.5296 without restraints) Performing minimization step: 1829. Total energy = 8666.9974 kcal/mol (8660.5449 without restraints) Performing minimization step: 1830. Total energy = 8664.0127 kcal/mol (8657.5618 without restraints) Performing minimization step: 1831. Total energy = 8661.0307 kcal/mol (8654.5814 without restraints) Performing minimization step: 1832. Total energy = 8658.0509 kcal/mol (8651.6034 without restraints) Performing minimization step: 1833. Total energy = 8655.0733 kcal/mol (8648.6274 without restraints) Performing minimization step: 1834. Total energy = 8652.0977 kcal/mol (8645.6535 without restraints) Performing minimization step: 1835. Total energy = 8649.1248 kcal/mol (8642.6822 without restraints) Performing minimization step: 1836. Total energy = 8646.1540 kcal/mol (8639.7130 without restraints) Performing minimization step: 1837. Total energy = 8643.1856 kcal/mol (8636.7463 without restraints) Performing minimization step: 1838. Total energy = 8640.2194 kcal/mol (8633.7819 without restraints) Performing minimization step: 1839. Total energy = 8637.2557 kcal/mol (8630.8198 without restraints) Performing minimization step: 1840. Total energy = 8634.2943 kcal/mol (8627.8600 without restraints) Performing minimization step: 1841. Total energy = 8631.3346 kcal/mol (8624.9020 without restraints) Performing minimization step: 1842. Total energy = 8628.3772 kcal/mol (8621.9462 without restraints) Performing minimization step: 1843. Total energy = 8625.4223 kcal/mol (8618.9930 without restraints) Performing minimization step: 1844. Total energy = 8622.4696 kcal/mol (8616.0418 without restraints) Performing minimization step: 1845. Total energy = 8619.5192 kcal/mol (8613.0931 without restraints) Performing minimization step: 1846. Total energy = 8616.5707 kcal/mol (8610.1462 without restraints) Performing minimization step: 1847. Total energy = 8613.6245 kcal/mol (8607.2016 without restraints) Performing minimization step: 1848. Total energy = 8610.6802 kcal/mol (8604.2590 without restraints) Performing minimization step: 1849. Total energy = 8607.7385 kcal/mol (8601.3190 without restraints) Performing minimization step: 1850. Total energy = 8604.7994 kcal/mol (8598.3815 without restraints) Performing minimization step: 1851. Total energy = 8601.8618 kcal/mol (8595.4454 without restraints) Performing minimization step: 1852. Total energy = 8598.9265 kcal/mol (8592.5118 without restraints) Performing minimization step: 1853. Total energy = 8595.9933 kcal/mol (8589.5803 without restraints) Performing minimization step: 1854. Total energy = 8593.0624 kcal/mol (8586.6510 without restraints) Performing minimization step: 1855. Total energy = 8590.1340 kcal/mol (8583.7244 without restraints) Performing minimization step: 1856. Total energy = 8587.2075 kcal/mol (8580.7995 without restraints) Performing minimization step: 1857. Total energy = 8584.2831 kcal/mol (8577.8766 without restraints) Performing minimization step: 1858. Total energy = 8581.3609 kcal/mol (8574.9561 without restraints) Performing minimization step: 1859. Total energy = 8578.4406 kcal/mol (8572.0374 without restraints) Performing minimization step: 1860. Total energy = 8575.5223 kcal/mol (8569.1207 without restraints) Performing minimization step: 1861. Total energy = 8572.6064 kcal/mol (8566.2064 without restraints) Performing minimization step: 1862. Total energy = 8569.6925 kcal/mol (8563.2942 without restraints) Performing minimization step: 1863. Total energy = 8566.7813 kcal/mol (8560.3847 without restraints) Performing minimization step: 1864. Total energy = 8563.8717 kcal/mol (8557.4766 without restraints) Performing minimization step: 1865. Total energy = 8560.9642 kcal/mol (8554.5709 without restraints) Performing minimization step: 1866. Total energy = 8558.0588 kcal/mol (8551.6669 without restraints) Performing minimization step: 1867. Total energy = 8555.1556 kcal/mol (8548.7653 without restraints) Performing minimization step: 1868. Total energy = 8552.2542 kcal/mol (8545.8656 without restraints) Performing minimization step: 1869. Total energy = 8549.3547 kcal/mol (8542.9677 without restraints) Performing minimization step: 1870. Total energy = 8546.4576 kcal/mol (8540.0723 without restraints) Performing minimization step: 1871. Total energy = 8543.5624 kcal/mol (8537.1786 without restraints) Performing minimization step: 1872. Total energy = 8540.6692 kcal/mol (8534.2871 without restraints) Performing minimization step: 1873. Total energy = 8537.7782 kcal/mol (8531.3976 without restraints) Performing minimization step: 1874. Total energy = 8534.8893 kcal/mol (8528.5103 without restraints) Performing minimization step: 1875. Total energy = 8532.0023 kcal/mol (8525.6249 without restraints) Performing minimization step: 1876. Total energy = 8529.1174 kcal/mol (8522.7417 without restraints) Performing minimization step: 1877. Total energy = 8526.2345 kcal/mol (8519.8604 without restraints) Performing minimization step: 1878. Total energy = 8523.3538 kcal/mol (8516.9813 without restraints) Performing minimization step: 1879. Total energy = 8520.4747 kcal/mol (8514.1038 without restraints) Performing minimization step: 1880. Total energy = 8517.5978 kcal/mol (8511.2285 without restraints) Performing minimization step: 1881. Total energy = 8514.7229 kcal/mol (8508.3553 without restraints) Performing minimization step: 1882. Total energy = 8511.8502 kcal/mol (8505.4842 without restraints) Performing minimization step: 1883. Total energy = 8508.9792 kcal/mol (8502.6148 without restraints) Performing minimization step: 1884. Total energy = 8506.1104 kcal/mol (8499.7475 without restraints) Performing minimization step: 1885. Total energy = 8503.2439 kcal/mol (8496.8827 without restraints) Performing minimization step: 1886. Total energy = 8500.3793 kcal/mol (8494.0197 without restraints) Performing minimization step: 1887. Total energy = 8497.5166 kcal/mol (8491.1586 without restraints) Performing minimization step: 1888. Total energy = 8494.6556 kcal/mol (8488.2992 without restraints) Performing minimization step: 1889. Total energy = 8491.7967 kcal/mol (8485.4419 without restraints) Performing minimization step: 1890. Total energy = 8488.9396 kcal/mol (8482.5863 without restraints) Performing minimization step: 1891. Total energy = 8486.0844 kcal/mol (8479.7328 without restraints) Performing minimization step: 1892. Total energy = 8483.2314 kcal/mol (8476.8814 without restraints) Performing minimization step: 1893. Total energy = 8480.3805 kcal/mol (8474.0321 without restraints) Performing minimization step: 1894. Total energy = 8477.5308 kcal/mol (8471.1840 without restraints) Performing minimization step: 1895. Total energy = 8474.6834 kcal/mol (8468.3381 without restraints) Performing minimization step: 1896. Total energy = 8471.8378 kcal/mol (8465.4940 without restraints) Performing minimization step: 1897. Total energy = 8468.9941 kcal/mol (8462.6520 without restraints) Performing minimization step: 1898. Total energy = 8466.1524 kcal/mol (8459.8119 without restraints) Performing minimization step: 1899. Total energy = 8463.3126 kcal/mol (8456.9738 without restraints) Performing minimization step: 1900. Total energy = 8460.4749 kcal/mol (8454.1377 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 8457.6390 kcal/mol (8451.3033 without restraints) Performing minimization step: 1902. Total energy = 8454.8048 kcal/mol (8448.4705 without restraints) Performing minimization step: 1903. Total energy = 8451.9724 kcal/mol (8445.6399 without restraints) Performing minimization step: 1904. Total energy = 8449.1423 kcal/mol (8442.8114 without restraints) Performing minimization step: 1905. Total energy = 8446.3138 kcal/mol (8439.9844 without restraints) Performing minimization step: 1906. Total energy = 8443.4871 kcal/mol (8437.1594 without restraints) Performing minimization step: 1907. Total energy = 8440.6624 kcal/mol (8434.3362 without restraints) Performing minimization step: 1908. Total energy = 8437.8395 kcal/mol (8431.5150 without restraints) Performing minimization step: 1909. Total energy = 8435.0185 kcal/mol (8428.6955 without restraints) Performing minimization step: 1910. Total energy = 8432.1993 kcal/mol (8425.8780 without restraints) Performing minimization step: 1911. Total energy = 8429.3821 kcal/mol (8423.0621 without restraints) Performing minimization step: 1912. Total energy = 8426.5662 kcal/mol (8420.2479 without restraints) Performing minimization step: 1913. Total energy = 8423.7522 kcal/mol (8417.4355 without restraints) Performing minimization step: 1914. Total energy = 8420.9399 kcal/mol (8414.6247 without restraints) Performing minimization step: 1915. Total energy = 8418.1298 kcal/mol (8411.8163 without restraints) Performing minimization step: 1916. Total energy = 8415.3215 kcal/mol (8409.0095 without restraints) Performing minimization step: 1917. Total energy = 8412.5150 kcal/mol (8406.2045 without restraints) Performing minimization step: 1918. Total energy = 8409.7100 kcal/mol (8403.4012 without restraints) Performing minimization step: 1919. Total energy = 8406.9070 kcal/mol (8400.5998 without restraints) Performing minimization step: 1920. Total energy = 8404.1061 kcal/mol (8397.8007 without restraints) Performing minimization step: 1921. Total energy = 8401.3072 kcal/mol (8395.0031 without restraints) Performing minimization step: 1922. Total energy = 8398.5095 kcal/mol (8392.2070 without restraints) Performing minimization step: 1923. Total energy = 8395.7137 kcal/mol (8389.4127 without restraints) Performing minimization step: 1924. Total energy = 8392.9192 kcal/mol (8386.6198 without restraints) Performing minimization step: 1925. Total energy = 8390.1266 kcal/mol (8383.8288 without restraints) Performing minimization step: 1926. Total energy = 8387.3361 kcal/mol (8381.0399 without restraints) Performing minimization step: 1927. Total energy = 8384.5475 kcal/mol (8378.2528 without restraints) Performing minimization step: 1928. Total energy = 8381.7606 kcal/mol (8375.4674 without restraints) Performing minimization step: 1929. Total energy = 8378.9750 kcal/mol (8372.6834 without restraints) Performing minimization step: 1930. Total energy = 8376.1910 kcal/mol (8369.9010 without restraints) Performing minimization step: 1931. Total energy = 8373.4091 kcal/mol (8367.1206 without restraints) Performing minimization step: 1932. Total energy = 8370.6289 kcal/mol (8364.3419 without restraints) Performing minimization step: 1933. Total energy = 8367.8510 kcal/mol (8361.5657 without restraints) Performing minimization step: 1934. Total energy = 8365.0741 kcal/mol (8358.7902 without restraints) Performing minimization step: 1935. Total energy = 8362.2990 kcal/mol (8356.0168 without restraints) Performing minimization step: 1936. Total energy = 8359.5256 kcal/mol (8353.2449 without restraints) Performing minimization step: 1937. Total energy = 8356.7543 kcal/mol (8350.4752 without restraints) Performing minimization step: 1938. Total energy = 8353.9844 kcal/mol (8347.7068 without restraints) Performing minimization step: 1939. Total energy = 8351.2161 kcal/mol (8344.9400 without restraints) Performing minimization step: 1940. Total energy = 8348.4497 kcal/mol (8342.1753 without restraints) Performing minimization step: 1941. Total energy = 8345.6848 kcal/mol (8339.4119 without restraints) Performing minimization step: 1942. Total energy = 8342.9218 kcal/mol (8336.6504 without restraints) Performing minimization step: 1943. Total energy = 8340.1601 kcal/mol (8333.8904 without restraints) Performing minimization step: 1944. Total energy = 8337.4003 kcal/mol (8331.1320 without restraints) Performing minimization step: 1945. Total energy = 8334.6420 kcal/mol (8328.3751 without restraints) Performing minimization step: 1946. Total energy = 8331.8852 kcal/mol (8325.6200 without restraints) Performing minimization step: 1947. Total energy = 8329.1310 kcal/mol (8322.8674 without restraints) Performing minimization step: 1948. Total energy = 8326.3776 kcal/mol (8320.1155 without restraints) Performing minimization step: 1949. Total energy = 8323.6265 kcal/mol (8317.3659 without restraints) Performing minimization step: 1950. Total energy = 8320.8762 kcal/mol (8314.6171 without restraints) Performing minimization step: 1951. Total energy = 8318.1279 kcal/mol (8311.8704 without restraints) Performing minimization step: 1952. Total energy = 8315.3810 kcal/mol (8309.1250 without restraints) Performing minimization step: 1953. Total energy = 8312.6357 kcal/mol (8306.3813 without restraints) Performing minimization step: 1954. Total energy = 8309.8928 kcal/mol (8303.6399 without restraints) Performing minimization step: 1955. Total energy = 8307.1504 kcal/mol (8300.8990 without restraints) Performing minimization step: 1956. Total energy = 8304.4099 kcal/mol (8298.1601 without restraints) Performing minimization step: 1957. Total energy = 8301.6711 kcal/mol (8295.4228 without restraints) Performing minimization step: 1958. Total energy = 8298.9338 kcal/mol (8292.6870 without restraints) Performing minimization step: 1959. Total energy = 8296.1981 kcal/mol (8289.9528 without restraints) Performing minimization step: 1960. Total energy = 8293.4634 kcal/mol (8287.2198 without restraints) Performing minimization step: 1961. Total energy = 8290.7309 kcal/mol (8284.4888 without restraints) Performing minimization step: 1962. Total energy = 8287.9997 kcal/mol (8281.7591 without restraints) Performing minimization step: 1963. Total energy = 8285.2703 kcal/mol (8279.0312 without restraints) Performing minimization step: 1964. Total energy = 8282.5425 kcal/mol (8276.3049 without restraints) Performing minimization step: 1965. Total energy = 8279.8162 kcal/mol (8273.5801 without restraints) Performing minimization step: 1966. Total energy = 8277.0914 kcal/mol (8270.8568 without restraints) Performing minimization step: 1967. Total energy = 8274.3682 kcal/mol (8268.1352 without restraints) Performing minimization step: 1968. Total energy = 8271.6462 kcal/mol (8265.4147 without restraints) Performing minimization step: 1969. Total energy = 8268.9259 kcal/mol (8262.6959 without restraints) Performing minimization step: 1970. Total energy = 8266.2071 kcal/mol (8259.9787 without restraints) Performing minimization step: 1971. Total energy = 8263.4900 kcal/mol (8257.2631 without restraints) Performing minimization step: 1972. Total energy = 8260.7747 kcal/mol (8254.5493 without restraints) Performing minimization step: 1973. Total energy = 8258.0610 kcal/mol (8251.8371 without restraints) Performing minimization step: 1974. Total energy = 8255.3480 kcal/mol (8249.1257 without restraints) Performing minimization step: 1975. Total energy = 8252.6370 kcal/mol (8246.4161 without restraints) Performing minimization step: 1976. Total energy = 8249.9276 kcal/mol (8243.7083 without restraints) Performing minimization step: 1977. Total energy = 8247.2197 kcal/mol (8241.0019 without restraints) Performing minimization step: 1978. Total energy = 8244.5134 kcal/mol (8238.2970 without restraints) Performing minimization step: 1979. Total energy = 8241.8086 kcal/mol (8235.5938 without restraints) Performing minimization step: 1980. Total energy = 8239.1046 kcal/mol (8232.8912 without restraints) Performing minimization step: 1981. Total energy = 8236.4021 kcal/mol (8230.1903 without restraints) Performing minimization step: 1982. Total energy = 8233.7014 kcal/mol (8227.4912 without restraints) Performing minimization step: 1983. Total energy = 8231.0021 kcal/mol (8224.7933 without restraints) Performing minimization step: 1984. Total energy = 8228.3041 kcal/mol (8222.0969 without restraints) Performing minimization step: 1985. Total energy = 8225.6079 kcal/mol (8219.4023 without restraints) Performing minimization step: 1986. Total energy = 8222.9133 kcal/mol (8216.7090 without restraints) Performing minimization step: 1987. Total energy = 8220.2198 kcal/mol (8214.0170 without restraints) Performing minimization step: 1988. Total energy = 8217.5281 kcal/mol (8211.3269 without restraints) Performing minimization step: 1989. Total energy = 8214.8375 kcal/mol (8208.6376 without restraints) Performing minimization step: 1990. Total energy = 8212.1480 kcal/mol (8205.9496 without restraints) Performing minimization step: 1991. Total energy = 8209.4606 kcal/mol (8203.2639 without restraints) Performing minimization step: 1992. Total energy = 8206.7744 kcal/mol (8200.5792 without restraints) Performing minimization step: 1993. Total energy = 8204.0898 kcal/mol (8197.8961 without restraints) Performing minimization step: 1994. Total energy = 8201.4066 kcal/mol (8195.2144 without restraints) Performing minimization step: 1995. Total energy = 8198.7246 kcal/mol (8192.5338 without restraints) Performing minimization step: 1996. Total energy = 8196.0434 kcal/mol (8189.8541 without restraints) Performing minimization step: 1997. Total energy = 8193.3644 kcal/mol (8187.1766 without restraints) Performing minimization step: 1998. Total energy = 8190.6868 kcal/mol (8184.5005 without restraints) Performing minimization step: 1999. Total energy = 8188.0100 kcal/mol (8181.8251 without restraints) Performing minimization step: 2000. Total energy = 8185.3346 kcal/mol (8179.1514 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 8182.6610 kcal/mol (8176.4792 without restraints) Performing minimization step: 2002. Total energy = 8179.9888 kcal/mol (8173.8085 without restraints) Performing minimization step: 2003. Total energy = 8177.3180 kcal/mol (8171.1392 without restraints) Performing minimization step: 2004. Total energy = 8174.6481 kcal/mol (8168.4707 without restraints) Performing minimization step: 2005. Total energy = 8171.9799 kcal/mol (8165.8041 without restraints) Performing minimization step: 2006. Total energy = 8169.3137 kcal/mol (8163.1396 without restraints) Performing minimization step: 2007. Total energy = 8166.6485 kcal/mol (8160.4756 without restraints) Performing minimization step: 2008. Total energy = 8163.9842 kcal/mol (8157.8128 without restraints) Performing minimization step: 2009. Total energy = 8161.3216 kcal/mol (8155.1517 without restraints) Performing minimization step: 2010. Total energy = 8158.6605 kcal/mol (8152.4923 without restraints) Performing minimization step: 2011. Total energy = 8156.0007 kcal/mol (8149.8338 without restraints) Performing minimization step: 2012. Total energy = 8153.3421 kcal/mol (8147.1767 without restraints) Performing minimization step: 2013. Total energy = 8150.6850 kcal/mol (8144.5210 without restraints) Performing minimization step: 2014. Total energy = 8148.0289 kcal/mol (8141.8665 without restraints) Performing minimization step: 2015. Total energy = 8145.3745 kcal/mol (8139.2135 without restraints) Performing minimization step: 2016. Total energy = 8142.7216 kcal/mol (8136.5620 without restraints) Performing minimization step: 2017. Total energy = 8140.0693 kcal/mol (8133.9112 without restraints) Performing minimization step: 2018. Total energy = 8137.4193 kcal/mol (8131.2627 without restraints) Performing minimization step: 2019. Total energy = 8134.7698 kcal/mol (8128.6146 without restraints) Performing minimization step: 2020. Total energy = 8132.1214 kcal/mol (8125.9677 without restraints) Performing minimization step: 2021. Total energy = 8129.4747 kcal/mol (8123.3225 without restraints) Performing minimization step: 2022. Total energy = 8126.8290 kcal/mol (8120.6783 without restraints) Performing minimization step: 2023. Total energy = 8124.1852 kcal/mol (8118.0359 without restraints) Performing minimization step: 2024. Total energy = 8121.5421 kcal/mol (8115.3943 without restraints) Performing minimization step: 2025. Total energy = 8118.9004 kcal/mol (8112.7541 without restraints) Performing minimization step: 2026. Total energy = 8116.2598 kcal/mol (8110.1149 without restraints) Performing minimization step: 2027. Total energy = 8113.6209 kcal/mol (8107.4776 without restraints) Performing minimization step: 2028. Total energy = 8110.9833 kcal/mol (8104.8414 without restraints) Performing minimization step: 2029. Total energy = 8108.3466 kcal/mol (8102.2062 without restraints) Performing minimization step: 2030. Total energy = 8105.7110 kcal/mol (8099.5718 without restraints) Performing minimization step: 2031. Total energy = 8103.0769 kcal/mol (8096.9393 without restraints) Performing minimization step: 2032. Total energy = 8100.4443 kcal/mol (8094.3081 without restraints) Performing minimization step: 2033. Total energy = 8097.8125 kcal/mol (8091.6779 without restraints) Performing minimization step: 2034. Total energy = 8095.1822 kcal/mol (8089.0491 without restraints) Performing minimization step: 2035. Total energy = 8092.5527 kcal/mol (8086.4209 without restraints) Performing minimization step: 2036. Total energy = 8089.9248 kcal/mol (8083.7945 without restraints) Performing minimization step: 2037. Total energy = 8087.2981 kcal/mol (8081.1693 without restraints) Performing minimization step: 2038. Total energy = 8084.6727 kcal/mol (8078.5454 without restraints) Performing minimization step: 2039. Total energy = 8082.0485 kcal/mol (8075.9226 without restraints) Performing minimization step: 2040. Total energy = 8079.4255 kcal/mol (8073.3010 without restraints) Performing minimization step: 2041. Total energy = 8076.8036 kcal/mol (8070.6806 without restraints) Performing minimization step: 2042. Total energy = 8074.1830 kcal/mol (8068.0614 without restraints) Performing minimization step: 2043. Total energy = 8071.5635 kcal/mol (8065.4433 without restraints) Performing minimization step: 2044. Total energy = 8068.9449 kcal/mol (8062.8263 without restraints) Performing minimization step: 2045. Total energy = 8066.3282 kcal/mol (8060.2109 without restraints) Performing minimization step: 2046. Total energy = 8063.7128 kcal/mol (8057.5970 without restraints) Performing minimization step: 2047. Total energy = 8061.0987 kcal/mol (8054.9842 without restraints) Performing minimization step: 2048. Total energy = 8058.4851 kcal/mol (8052.3723 without restraints) Performing minimization step: 2049. Total energy = 8055.8732 kcal/mol (8049.7617 without restraints) Performing minimization step: 2050. Total energy = 8053.2624 kcal/mol (8047.1523 without restraints) Performing minimization step: 2051. Total energy = 8050.6525 kcal/mol (8044.5439 without restraints) Performing minimization step: 2052. Total energy = 8048.0442 kcal/mol (8041.9371 without restraints) Performing minimization step: 2053. Total energy = 8045.4364 kcal/mol (8039.3308 without restraints) Performing minimization step: 2054. Total energy = 8042.8305 kcal/mol (8036.7262 without restraints) Performing minimization step: 2055. Total energy = 8040.2255 kcal/mol (8034.1228 without restraints) Performing minimization step: 2056. Total energy = 8037.6215 kcal/mol (8031.5201 without restraints) Performing minimization step: 2057. Total energy = 8035.0192 kcal/mol (8028.9193 without restraints) Performing minimization step: 2058. Total energy = 8032.4175 kcal/mol (8026.3190 without restraints) Performing minimization step: 2059. Total energy = 8029.8169 kcal/mol (8023.7198 without restraints) Performing minimization step: 2060. Total energy = 8027.2175 kcal/mol (8021.1218 without restraints) Performing minimization step: 2061. Total energy = 8024.6200 kcal/mol (8018.5258 without restraints) Performing minimization step: 2062. Total energy = 8022.0230 kcal/mol (8015.9303 without restraints) Performing minimization step: 2063. Total energy = 8019.4271 kcal/mol (8013.3357 without restraints) Performing minimization step: 2064. Total energy = 8016.8323 kcal/mol (8010.7424 without restraints) Performing minimization step: 2065. Total energy = 8014.2381 kcal/mol (8008.1495 without restraints) Performing minimization step: 2066. Total energy = 8011.6454 kcal/mol (8005.5583 without restraints) Performing minimization step: 2067. Total energy = 8009.0543 kcal/mol (8002.9688 without restraints) Performing minimization step: 2068. Total energy = 8006.4640 kcal/mol (8000.3797 without restraints) Performing minimization step: 2069. Total energy = 8003.8750 kcal/mol (7997.7921 without restraints) Performing minimization step: 2070. Total energy = 8001.2867 kcal/mol (7995.2053 without restraints) Performing minimization step: 2071. Total energy = 7998.6996 kcal/mol (7992.6196 without restraints) Performing minimization step: 2072. Total energy = 7996.1137 kcal/mol (7990.0352 without restraints) Performing minimization step: 2073. Total energy = 7993.5288 kcal/mol (7987.4516 without restraints) Performing minimization step: 2074. Total energy = 7990.9445 kcal/mol (7984.8688 without restraints) Performing minimization step: 2075. Total energy = 7988.3621 kcal/mol (7982.2878 without restraints) Performing minimization step: 2076. Total energy = 7985.7804 kcal/mol (7979.7075 without restraints) Performing minimization step: 2077. Total energy = 7983.2000 kcal/mol (7977.1285 without restraints) Performing minimization step: 2078. Total energy = 7980.6205 kcal/mol (7974.5505 without restraints) Performing minimization step: 2079. Total energy = 7978.0423 kcal/mol (7971.9736 without restraints) Performing minimization step: 2080. Total energy = 7975.4647 kcal/mol (7969.3975 without restraints) Performing minimization step: 2081. Total energy = 7972.8884 kcal/mol (7966.8226 without restraints) Performing minimization step: 2082. Total energy = 7970.3134 kcal/mol (7964.2490 without restraints) Performing minimization step: 2083. Total energy = 7967.7399 kcal/mol (7961.6769 without restraints) Performing minimization step: 2084. Total energy = 7965.1668 kcal/mol (7959.1053 without restraints) Performing minimization step: 2085. Total energy = 7962.5949 kcal/mol (7956.5346 without restraints) Performing minimization step: 2086. Total energy = 7960.0241 kcal/mol (7953.9652 without restraints) Performing minimization step: 2087. Total energy = 7957.4541 kcal/mol (7951.3967 without restraints) Performing minimization step: 2088. Total energy = 7954.8854 kcal/mol (7948.8294 without restraints) Performing minimization step: 2089. Total energy = 7952.3173 kcal/mol (7946.2627 without restraints) Performing minimization step: 2090. Total energy = 7949.7508 kcal/mol (7943.6976 without restraints) Performing minimization step: 2091. Total energy = 7947.1850 kcal/mol (7941.1331 without restraints) Performing minimization step: 2092. Total energy = 7944.6206 kcal/mol (7938.5702 without restraints) Performing minimization step: 2093. Total energy = 7942.0567 kcal/mol (7936.0077 without restraints) Performing minimization step: 2094. Total energy = 7939.4938 kcal/mol (7933.4462 without restraints) Performing minimization step: 2095. Total energy = 7936.9318 kcal/mol (7930.8856 without restraints) Performing minimization step: 2096. Total energy = 7934.3715 kcal/mol (7928.3267 without restraints) Performing minimization step: 2097. Total energy = 7931.8122 kcal/mol (7925.7689 without restraints) Performing minimization step: 2098. Total energy = 7929.2539 kcal/mol (7923.2120 without restraints) Performing minimization step: 2099. Total energy = 7926.6964 kcal/mol (7920.6557 without restraints) Performing minimization step: 2100. Total energy = 7924.1397 kcal/mol (7918.1005 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 7921.5843 kcal/mol (7915.5465 without restraints) Performing minimization step: 2102. Total energy = 7919.0299 kcal/mol (7912.9934 without restraints) Performing minimization step: 2103. Total energy = 7916.4762 kcal/mol (7910.4412 without restraints) Performing minimization step: 2104. Total energy = 7913.9234 kcal/mol (7907.8897 without restraints) Performing minimization step: 2105. Total energy = 7911.3717 kcal/mol (7905.3395 without restraints) Performing minimization step: 2106. Total energy = 7908.8211 kcal/mol (7902.7902 without restraints) Performing minimization step: 2107. Total energy = 7906.2715 kcal/mol (7900.2420 without restraints) Performing minimization step: 2108. Total energy = 7903.7228 kcal/mol (7897.6946 without restraints) Performing minimization step: 2109. Total energy = 7901.1750 kcal/mol (7895.1482 without restraints) Performing minimization step: 2110. Total energy = 7898.6282 kcal/mol (7892.6028 without restraints) Performing minimization step: 2111. Total energy = 7896.0826 kcal/mol (7890.0586 without restraints) Performing minimization step: 2112. Total energy = 7893.5379 kcal/mol (7887.5153 without restraints) Performing minimization step: 2113. Total energy = 7890.9942 kcal/mol (7884.9728 without restraints) Performing minimization step: 2114. Total energy = 7888.4511 kcal/mol (7882.4313 without restraints) Performing minimization step: 2115. Total energy = 7885.9095 kcal/mol (7879.8910 without restraints) Performing minimization step: 2116. Total energy = 7883.3683 kcal/mol (7877.3512 without restraints) Performing minimization step: 2117. Total energy = 7880.8282 kcal/mol (7874.8125 without restraints) Performing minimization step: 2118. Total energy = 7878.2891 kcal/mol (7872.2748 without restraints) Performing minimization step: 2119. Total energy = 7875.7510 kcal/mol (7869.7382 without restraints) Performing minimization step: 2120. Total energy = 7873.2143 kcal/mol (7867.2027 without restraints) Performing minimization step: 2121. Total energy = 7870.6780 kcal/mol (7864.6677 without restraints) Performing minimization step: 2122. Total energy = 7868.1425 kcal/mol (7862.1337 without restraints) Performing minimization step: 2123. Total energy = 7865.6085 kcal/mol (7859.6010 without restraints) Performing minimization step: 2124. Total energy = 7863.0748 kcal/mol (7857.0688 without restraints) Performing minimization step: 2125. Total energy = 7860.5424 kcal/mol (7854.5377 without restraints) Performing minimization step: 2126. Total energy = 7858.0104 kcal/mol (7852.0070 without restraints) Performing minimization step: 2127. Total energy = 7855.4796 kcal/mol (7849.4776 without restraints) Performing minimization step: 2128. Total energy = 7852.9501 kcal/mol (7846.9495 without restraints) Performing minimization step: 2129. Total energy = 7850.4215 kcal/mol (7844.4222 without restraints) Performing minimization step: 2130. Total energy = 7847.8934 kcal/mol (7841.8955 without restraints) Performing minimization step: 2131. Total energy = 7845.3663 kcal/mol (7839.3697 without restraints) Performing minimization step: 2132. Total energy = 7842.8398 kcal/mol (7836.8446 without restraints) Performing minimization step: 2133. Total energy = 7840.3146 kcal/mol (7834.3209 without restraints) Performing minimization step: 2134. Total energy = 7837.7906 kcal/mol (7831.7981 without restraints) Performing minimization step: 2135. Total energy = 7835.2677 kcal/mol (7829.2764 without restraints) Performing minimization step: 2136. Total energy = 7832.7450 kcal/mol (7826.7552 without restraints) Performing minimization step: 2137. Total energy = 7830.2233 kcal/mol (7824.2350 without restraints) Performing minimization step: 2138. Total energy = 7827.7032 kcal/mol (7821.7161 without restraints) Performing minimization step: 2139. Total energy = 7825.1832 kcal/mol (7819.1974 without restraints) Performing minimization step: 2140. Total energy = 7822.6641 kcal/mol (7816.6797 without restraints) Performing minimization step: 2141. Total energy = 7820.1459 kcal/mol (7814.1630 without restraints) Performing minimization step: 2142. Total energy = 7817.6290 kcal/mol (7811.6473 without restraints) Performing minimization step: 2143. Total energy = 7815.1126 kcal/mol (7809.1323 without restraints) Performing minimization step: 2144. Total energy = 7812.5973 kcal/mol (7806.6184 without restraints) Performing minimization step: 2145. Total energy = 7810.0829 kcal/mol (7804.1054 without restraints) Performing minimization step: 2146. Total energy = 7807.5693 kcal/mol (7801.5931 without restraints) Performing minimization step: 2147. Total energy = 7805.0565 kcal/mol (7799.0816 without restraints) Performing minimization step: 2148. Total energy = 7802.5443 kcal/mol (7796.5706 without restraints) Performing minimization step: 2149. Total energy = 7800.0332 kcal/mol (7794.0610 without restraints) Performing minimization step: 2150. Total energy = 7797.5230 kcal/mol (7791.5521 without restraints) Performing minimization step: 2151. Total energy = 7795.0136 kcal/mol (7789.0441 without restraints) Performing minimization step: 2152. Total energy = 7792.5052 kcal/mol (7786.5370 without restraints) Performing minimization step: 2153. Total energy = 7789.9977 kcal/mol (7784.0309 without restraints) Performing minimization step: 2154. Total energy = 7787.4909 kcal/mol (7781.5254 without restraints) Performing minimization step: 2155. Total energy = 7784.9850 kcal/mol (7779.0208 without restraints) Performing minimization step: 2156. Total energy = 7782.4794 kcal/mol (7776.5166 without restraints) Performing minimization step: 2157. Total energy = 7779.9753 kcal/mol (7774.0138 without restraints) Performing minimization step: 2158. Total energy = 7777.4719 kcal/mol (7771.5117 without restraints) Performing minimization step: 2159. Total energy = 7774.9690 kcal/mol (7769.0103 without restraints) Performing minimization step: 2160. Total energy = 7772.4670 kcal/mol (7766.5095 without restraints) Performing minimization step: 2161. Total energy = 7769.9661 kcal/mol (7764.0099 without restraints) Performing minimization step: 2162. Total energy = 7767.4662 kcal/mol (7761.5114 without restraints) Performing minimization step: 2163. Total energy = 7764.9671 kcal/mol (7759.0136 without restraints) Performing minimization step: 2164. Total energy = 7762.4688 kcal/mol (7756.5167 without restraints) Performing minimization step: 2165. Total energy = 7759.9712 kcal/mol (7754.0204 without restraints) Performing minimization step: 2166. Total energy = 7757.4745 kcal/mol (7751.5250 without restraints) Performing minimization step: 2167. Total energy = 7754.9789 kcal/mol (7749.0308 without restraints) Performing minimization step: 2168. Total energy = 7752.4840 kcal/mol (7746.5372 without restraints) Performing minimization step: 2169. Total energy = 7749.9900 kcal/mol (7744.0446 without restraints) Performing minimization step: 2170. Total energy = 7747.4964 kcal/mol (7741.5521 without restraints) Performing minimization step: 2171. Total energy = 7745.0037 kcal/mol (7739.0609 without restraints) Performing minimization step: 2172. Total energy = 7742.5114 kcal/mol (7736.5699 without restraints) Performing minimization step: 2173. Total energy = 7740.0207 kcal/mol (7734.0805 without restraints) Performing minimization step: 2174. Total energy = 7737.5302 kcal/mol (7731.5915 without restraints) Performing minimization step: 2175. Total energy = 7735.0409 kcal/mol (7729.1034 without restraints) Performing minimization step: 2176. Total energy = 7732.5524 kcal/mol (7726.6162 without restraints) Performing minimization step: 2177. Total energy = 7730.0645 kcal/mol (7724.1296 without restraints) Performing minimization step: 2178. Total energy = 7727.5774 kcal/mol (7721.6438 without restraints) Performing minimization step: 2179. Total energy = 7725.0913 kcal/mol (7719.1590 without restraints) Performing minimization step: 2180. Total energy = 7722.6057 kcal/mol (7716.6748 without restraints) Performing minimization step: 2181. Total energy = 7720.1211 kcal/mol (7714.1915 without restraints) Performing minimization step: 2182. Total energy = 7717.6371 kcal/mol (7711.7088 without restraints) Performing minimization step: 2183. Total energy = 7715.1543 kcal/mol (7709.2273 without restraints) Performing minimization step: 2184. Total energy = 7712.6719 kcal/mol (7706.7464 without restraints) Performing minimization step: 2185. Total energy = 7710.1905 kcal/mol (7704.2662 without restraints) Performing minimization step: 2186. Total energy = 7707.7097 kcal/mol (7701.7866 without restraints) Performing minimization step: 2187. Total energy = 7705.2297 kcal/mol (7699.3079 without restraints) Performing minimization step: 2188. Total energy = 7702.7505 kcal/mol (7696.8301 without restraints) Performing minimization step: 2189. Total energy = 7700.2720 kcal/mol (7694.3528 without restraints) Performing minimization step: 2190. Total energy = 7697.7942 kcal/mol (7691.8764 without restraints) Performing minimization step: 2191. Total energy = 7695.3173 kcal/mol (7689.4008 without restraints) Performing minimization step: 2192. Total energy = 7692.8411 kcal/mol (7686.9259 without restraints) Performing minimization step: 2193. Total energy = 7690.3652 kcal/mol (7684.4513 without restraints) Performing minimization step: 2194. Total energy = 7687.8905 kcal/mol (7681.9780 without restraints) Performing minimization step: 2195. Total energy = 7685.4171 kcal/mol (7679.5058 without restraints) Performing minimization step: 2196. Total energy = 7682.9441 kcal/mol (7677.0342 without restraints) Performing minimization step: 2197. Total energy = 7680.4722 kcal/mol (7674.5637 without restraints) Performing minimization step: 2198. Total energy = 7678.0009 kcal/mol (7672.0935 without restraints) Performing minimization step: 2199. Total energy = 7675.5302 kcal/mol (7669.6241 without restraints) Performing minimization step: 2200. Total energy = 7673.0599 kcal/mol (7667.1551 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 7670.5904 kcal/mol (7664.6869 without restraints) Performing minimization step: 2202. Total energy = 7668.1220 kcal/mol (7662.2198 without restraints) Performing minimization step: 2203. Total energy = 7665.6541 kcal/mol (7659.7533 without restraints) Performing minimization step: 2204. Total energy = 7663.1868 kcal/mol (7657.2873 without restraints) Performing minimization step: 2205. Total energy = 7660.7206 kcal/mol (7654.8223 without restraints) Performing minimization step: 2206. Total energy = 7658.2549 kcal/mol (7652.3580 without restraints) Performing minimization step: 2207. Total energy = 7655.7901 kcal/mol (7649.8944 without restraints) Performing minimization step: 2208. Total energy = 7653.3262 kcal/mol (7647.4318 without restraints) Performing minimization step: 2209. Total energy = 7650.8628 kcal/mol (7644.9696 without restraints) Performing minimization step: 2210. Total energy = 7648.4001 kcal/mol (7642.5084 without restraints) Performing minimization step: 2211. Total energy = 7645.9379 kcal/mol (7640.0473 without restraints) Performing minimization step: 2212. Total energy = 7643.4766 kcal/mol (7637.5874 without restraints) Performing minimization step: 2213. Total energy = 7641.0162 kcal/mol (7635.1282 without restraints) Performing minimization step: 2214. Total energy = 7638.5563 kcal/mol (7632.6696 without restraints) Performing minimization step: 2215. Total energy = 7636.0974 kcal/mol (7630.2120 without restraints) Performing minimization step: 2216. Total energy = 7633.6389 kcal/mol (7627.7548 without restraints) Performing minimization step: 2217. Total energy = 7631.1814 kcal/mol (7625.2986 without restraints) Performing minimization step: 2218. Total energy = 7628.7246 kcal/mol (7622.8431 without restraints) Performing minimization step: 2219. Total energy = 7626.2687 kcal/mol (7620.3885 without restraints) Performing minimization step: 2220. Total energy = 7623.8133 kcal/mol (7617.9344 without restraints) Performing minimization step: 2221. Total energy = 7621.3587 kcal/mol (7615.4813 without restraints) Performing minimization step: 2222. Total energy = 7618.9050 kcal/mol (7613.0286 without restraints) Performing minimization step: 2223. Total energy = 7616.4518 kcal/mol (7610.5767 without restraints) Performing minimization step: 2224. Total energy = 7613.9992 kcal/mol (7608.1255 without restraints) Performing minimization step: 2225. Total energy = 7611.5474 kcal/mol (7605.6749 without restraints) Performing minimization step: 2226. Total energy = 7609.0963 kcal/mol (7603.2250 without restraints) Performing minimization step: 2227. Total energy = 7606.6460 kcal/mol (7600.7760 without restraints) Performing minimization step: 2228. Total energy = 7604.1963 kcal/mol (7598.3276 without restraints) Performing minimization step: 2229. Total energy = 7601.7473 kcal/mol (7595.8800 without restraints) Performing minimization step: 2230. Total energy = 7599.2992 kcal/mol (7593.4331 without restraints) Performing minimization step: 2231. Total energy = 7596.8517 kcal/mol (7590.9869 without restraints) Performing minimization step: 2232. Total energy = 7594.4048 kcal/mol (7588.5411 without restraints) Performing minimization step: 2233. Total energy = 7591.9582 kcal/mol (7586.0959 without restraints) Performing minimization step: 2234. Total energy = 7589.5128 kcal/mol (7583.6518 without restraints) Performing minimization step: 2235. Total energy = 7587.0681 kcal/mol (7581.2083 without restraints) Performing minimization step: 2236. Total energy = 7584.6241 kcal/mol (7578.7658 without restraints) Performing minimization step: 2237. Total energy = 7582.1809 kcal/mol (7576.3237 without restraints) Performing minimization step: 2238. Total energy = 7579.7383 kcal/mol (7573.8824 without restraints) Performing minimization step: 2239. Total energy = 7577.2963 kcal/mol (7571.4417 without restraints) Performing minimization step: 2240. Total energy = 7574.8551 kcal/mol (7569.0017 without restraints) Performing minimization step: 2241. Total energy = 7572.4145 kcal/mol (7566.5624 without restraints) Performing minimization step: 2242. Total energy = 7569.9749 kcal/mol (7564.1241 without restraints) Performing minimization step: 2243. Total energy = 7567.5362 kcal/mol (7561.6866 without restraints) Performing minimization step: 2244. Total energy = 7565.0977 kcal/mol (7559.2494 without restraints) Performing minimization step: 2245. Total energy = 7562.6598 kcal/mol (7556.8127 without restraints) Performing minimization step: 2246. Total energy = 7560.2227 kcal/mol (7554.3769 without restraints) Performing minimization step: 2247. Total energy = 7557.7861 kcal/mol (7551.9415 without restraints) Performing minimization step: 2248. Total energy = 7555.3503 kcal/mol (7549.5070 without restraints) Performing minimization step: 2249. Total energy = 7552.9154 kcal/mol (7547.0734 without restraints) Performing minimization step: 2250. Total energy = 7550.4810 kcal/mol (7544.6403 without restraints) Performing minimization step: 2251. Total energy = 7548.0474 kcal/mol (7542.2080 without restraints) Performing minimization step: 2252. Total energy = 7545.6143 kcal/mol (7539.7761 without restraints) Performing minimization step: 2253. Total energy = 7543.1819 kcal/mol (7537.3450 without restraints) Performing minimization step: 2254. Total energy = 7540.7505 kcal/mol (7534.9150 without restraints) Performing minimization step: 2255. Total energy = 7538.3198 kcal/mol (7532.4853 without restraints) Performing minimization step: 2256. Total energy = 7535.8899 kcal/mol (7530.0567 without restraints) Performing minimization step: 2257. Total energy = 7533.4603 kcal/mol (7527.6284 without restraints) Performing minimization step: 2258. Total energy = 7531.0314 kcal/mol (7525.2007 without restraints) Performing minimization step: 2259. Total energy = 7528.6034 kcal/mol (7522.7740 without restraints) Performing minimization step: 2260. Total energy = 7526.1762 kcal/mol (7520.3482 without restraints) Performing minimization step: 2261. Total energy = 7523.7495 kcal/mol (7517.9226 without restraints) Performing minimization step: 2262. Total energy = 7521.3234 kcal/mol (7515.4979 without restraints) Performing minimization step: 2263. Total energy = 7518.8980 kcal/mol (7513.0737 without restraints) Performing minimization step: 2264. Total energy = 7516.4737 kcal/mol (7510.6506 without restraints) Performing minimization step: 2265. Total energy = 7514.0496 kcal/mol (7508.2277 without restraints) Performing minimization step: 2266. Total energy = 7511.6266 kcal/mol (7505.8059 without restraints) Performing minimization step: 2267. Total energy = 7509.2038 kcal/mol (7503.3844 without restraints) Performing minimization step: 2268. Total energy = 7506.7817 kcal/mol (7500.9635 without restraints) Performing minimization step: 2269. Total energy = 7504.3602 kcal/mol (7498.5433 without restraints) Performing minimization step: 2270. Total energy = 7501.9390 kcal/mol (7496.1233 without restraints) Performing minimization step: 2271. Total energy = 7499.5189 kcal/mol (7493.7046 without restraints) Performing minimization step: 2272. Total energy = 7497.0993 kcal/mol (7491.2861 without restraints) Performing minimization step: 2273. Total energy = 7494.6806 kcal/mol (7488.8687 without restraints) Performing minimization step: 2274. Total energy = 7492.2623 kcal/mol (7486.4516 without restraints) Performing minimization step: 2275. Total energy = 7489.8451 kcal/mol (7484.0357 without restraints) Performing minimization step: 2276. Total energy = 7487.4284 kcal/mol (7481.6202 without restraints) Performing minimization step: 2277. Total energy = 7485.0126 kcal/mol (7479.2056 without restraints) Performing minimization step: 2278. Total energy = 7482.5971 kcal/mol (7476.7914 without restraints) Performing minimization step: 2279. Total energy = 7480.1824 kcal/mol (7474.3781 without restraints) Performing minimization step: 2280. Total energy = 7477.7685 kcal/mol (7471.9654 without restraints) Performing minimization step: 2281. Total energy = 7475.3549 kcal/mol (7469.5529 without restraints) Performing minimization step: 2282. Total energy = 7472.9421 kcal/mol (7467.1414 without restraints) Performing minimization step: 2283. Total energy = 7470.5299 kcal/mol (7464.7304 without restraints) Performing minimization step: 2284. Total energy = 7468.1183 kcal/mol (7462.3200 without restraints) Performing minimization step: 2285. Total energy = 7465.7075 kcal/mol (7459.9106 without restraints) Performing minimization step: 2286. Total energy = 7463.2975 kcal/mol (7457.5017 without restraints) Performing minimization step: 2287. Total energy = 7460.8881 kcal/mol (7455.0936 without restraints) Performing minimization step: 2288. Total energy = 7458.4796 kcal/mol (7452.6863 without restraints) Performing minimization step: 2289. Total energy = 7456.0716 kcal/mol (7450.2796 without restraints) Performing minimization step: 2290. Total energy = 7453.6641 kcal/mol (7447.8733 without restraints) Performing minimization step: 2291. Total energy = 7451.2574 kcal/mol (7445.4679 without restraints) Performing minimization step: 2292. Total energy = 7448.8513 kcal/mol (7443.0629 without restraints) Performing minimization step: 2293. Total energy = 7446.4458 kcal/mol (7440.6586 without restraints) Performing minimization step: 2294. Total energy = 7444.0408 kcal/mol (7438.2549 without restraints) Performing minimization step: 2295. Total energy = 7441.6370 kcal/mol (7435.8523 without restraints) Performing minimization step: 2296. Total energy = 7439.2334 kcal/mol (7433.4500 without restraints) Performing minimization step: 2297. Total energy = 7436.8305 kcal/mol (7431.0482 without restraints) Performing minimization step: 2298. Total energy = 7434.4282 kcal/mol (7428.6472 without restraints) Performing minimization step: 2299. Total energy = 7432.0266 kcal/mol (7426.2468 without restraints) Performing minimization step: 2300. Total energy = 7429.6261 kcal/mol (7423.8475 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 7427.2258 kcal/mol (7421.4485 without restraints) Performing minimization step: 2302. Total energy = 7424.8261 kcal/mol (7419.0500 without restraints) Performing minimization step: 2303. Total energy = 7422.4271 kcal/mol (7416.6522 without restraints) Performing minimization step: 2304. Total energy = 7420.0288 kcal/mol (7414.2552 without restraints) Performing minimization step: 2305. Total energy = 7417.6312 kcal/mol (7411.8588 without restraints) Performing minimization step: 2306. Total energy = 7415.2342 kcal/mol (7409.4630 without restraints) Performing minimization step: 2307. Total energy = 7412.8381 kcal/mol (7407.0682 without restraints) Performing minimization step: 2308. Total energy = 7410.4425 kcal/mol (7404.6738 without restraints) Performing minimization step: 2309. Total energy = 7408.0475 kcal/mol (7402.2800 without restraints) Performing minimization step: 2310. Total energy = 7405.6530 kcal/mol (7399.8867 without restraints) Performing minimization step: 2311. Total energy = 7403.2594 kcal/mol (7397.4943 without restraints) Performing minimization step: 2312. Total energy = 7400.8663 kcal/mol (7395.1025 without restraints) Performing minimization step: 2313. Total energy = 7398.4736 kcal/mol (7392.7110 without restraints) Performing minimization step: 2314. Total energy = 7396.0819 kcal/mol (7390.3204 without restraints) Performing minimization step: 2315. Total energy = 7393.6908 kcal/mol (7387.9307 without restraints) Performing minimization step: 2316. Total energy = 7391.3004 kcal/mol (7385.5414 without restraints) Performing minimization step: 2317. Total energy = 7388.9106 kcal/mol (7383.1528 without restraints) Performing minimization step: 2318. Total energy = 7386.5214 kcal/mol (7380.7649 without restraints) Performing minimization step: 2319. Total energy = 7384.1329 kcal/mol (7378.3776 without restraints) Performing minimization step: 2320. Total energy = 7381.7449 kcal/mol (7375.9908 without restraints) Performing minimization step: 2321. Total energy = 7379.3580 kcal/mol (7373.6053 without restraints) Performing minimization step: 2322. Total energy = 7376.9716 kcal/mol (7371.2199 without restraints) Performing minimization step: 2323. Total energy = 7374.5857 kcal/mol (7368.8352 without restraints) Performing minimization step: 2324. Total energy = 7372.2002 kcal/mol (7366.4510 without restraints) Performing minimization step: 2325. Total energy = 7369.8157 kcal/mol (7364.0677 without restraints) Performing minimization step: 2326. Total energy = 7367.4319 kcal/mol (7361.6850 without restraints) Performing minimization step: 2327. Total energy = 7365.0486 kcal/mol (7359.3030 without restraints) Performing minimization step: 2328. Total energy = 7362.6660 kcal/mol (7356.9217 without restraints) Performing minimization step: 2329. Total energy = 7360.2841 kcal/mol (7354.5409 without restraints) Performing minimization step: 2330. Total energy = 7357.9031 kcal/mol (7352.1612 without restraints) Performing minimization step: 2331. Total energy = 7355.5223 kcal/mol (7349.7816 without restraints) Performing minimization step: 2332. Total energy = 7353.1424 kcal/mol (7347.4028 without restraints) Performing minimization step: 2333. Total energy = 7350.7632 kcal/mol (7345.0249 without restraints) Performing minimization step: 2334. Total energy = 7348.3848 kcal/mol (7342.6477 without restraints) Performing minimization step: 2335. Total energy = 7346.0065 kcal/mol (7340.2705 without restraints) Performing minimization step: 2336. Total energy = 7343.6294 kcal/mol (7337.8946 without restraints) Performing minimization step: 2337. Total energy = 7341.2527 kcal/mol (7335.5192 without restraints) Performing minimization step: 2338. Total energy = 7338.8766 kcal/mol (7333.1443 without restraints) Performing minimization step: 2339. Total energy = 7336.5013 kcal/mol (7330.7701 without restraints) Performing minimization step: 2340. Total energy = 7334.1268 kcal/mol (7328.3969 without restraints) Performing minimization step: 2341. Total energy = 7331.7530 kcal/mol (7326.0243 without restraints) Performing minimization step: 2342. Total energy = 7329.3796 kcal/mol (7323.6522 without restraints) Performing minimization step: 2343. Total energy = 7327.0073 kcal/mol (7321.2810 without restraints) Performing minimization step: 2344. Total energy = 7324.6358 kcal/mol (7318.9108 without restraints) Performing minimization step: 2345. Total energy = 7322.2646 kcal/mol (7316.5407 without restraints) Performing minimization step: 2346. Total energy = 7319.8938 kcal/mol (7314.1711 without restraints) Performing minimization step: 2347. Total energy = 7317.5238 kcal/mol (7311.8024 without restraints) Performing minimization step: 2348. Total energy = 7315.1546 kcal/mol (7309.4344 without restraints) Performing minimization step: 2349. Total energy = 7312.7863 kcal/mol (7307.0673 without restraints) Performing minimization step: 2350. Total energy = 7310.4183 kcal/mol (7304.7004 without restraints) Performing minimization step: 2351. Total energy = 7308.0511 kcal/mol (7302.3344 without restraints) Performing minimization step: 2352. Total energy = 7305.6846 kcal/mol (7299.9691 without restraints) Performing minimization step: 2353. Total energy = 7303.3187 kcal/mol (7297.6045 without restraints) Performing minimization step: 2354. Total energy = 7300.9534 kcal/mol (7295.2403 without restraints) Performing minimization step: 2355. Total energy = 7298.5887 kcal/mol (7292.8768 without restraints) Performing minimization step: 2356. Total energy = 7296.2250 kcal/mol (7290.5144 without restraints) Performing minimization step: 2357. Total energy = 7293.8617 kcal/mol (7288.1521 without restraints) Performing minimization step: 2358. Total energy = 7291.4989 kcal/mol (7285.7906 without restraints) Performing minimization step: 2359. Total energy = 7289.1368 kcal/mol (7283.4297 without restraints) Performing minimization step: 2360. Total energy = 7286.7754 kcal/mol (7281.0695 without restraints) Performing minimization step: 2361. Total energy = 7284.4147 kcal/mol (7278.7100 without restraints) Performing minimization step: 2362. Total energy = 7282.0547 kcal/mol (7276.3512 without restraints) Performing minimization step: 2363. Total energy = 7279.6953 kcal/mol (7273.9930 without restraints) Performing minimization step: 2364. Total energy = 7277.3362 kcal/mol (7271.6350 without restraints) Performing minimization step: 2365. Total energy = 7274.9778 kcal/mol (7269.2779 without restraints) Performing minimization step: 2366. Total energy = 7272.6205 kcal/mol (7266.9218 without restraints) Performing minimization step: 2367. Total energy = 7270.2641 kcal/mol (7264.5665 without restraints) Performing minimization step: 2368. Total energy = 7267.9081 kcal/mol (7262.2117 without restraints) Performing minimization step: 2369. Total energy = 7265.5528 kcal/mol (7259.8576 without restraints) Performing minimization step: 2370. Total energy = 7263.1981 kcal/mol (7257.5041 without restraints) Performing minimization step: 2371. Total energy = 7260.8442 kcal/mol (7255.1513 without restraints) Performing minimization step: 2372. Total energy = 7258.4912 kcal/mol (7252.7998 without restraints) Performing minimization step: 2373. Total energy = 7256.1388 kcal/mol (7250.4484 without restraints) Performing minimization step: 2374. Total energy = 7253.7868 kcal/mol (7248.0976 without restraints) Performing minimization step: 2375. Total energy = 7251.4361 kcal/mol (7245.7481 without restraints) Performing minimization step: 2376. Total energy = 7249.0855 kcal/mol (7243.3987 without restraints) Performing minimization step: 2377. Total energy = 7246.7356 kcal/mol (7241.0500 without restraints) Performing minimization step: 2378. Total energy = 7244.3867 kcal/mol (7238.7022 without restraints) Performing minimization step: 2379. Total energy = 7242.0379 kcal/mol (7236.3546 without restraints) Performing minimization step: 2380. Total energy = 7239.6900 kcal/mol (7234.0079 without restraints) Performing minimization step: 2381. Total energy = 7237.3428 kcal/mol (7231.6619 without restraints) Performing minimization step: 2382. Total energy = 7234.9962 kcal/mol (7229.3163 without restraints) Performing minimization step: 2383. Total energy = 7232.6504 kcal/mol (7226.9718 without restraints) Performing minimization step: 2384. Total energy = 7230.3053 kcal/mol (7224.6279 without restraints) Performing minimization step: 2385. Total energy = 7227.9611 kcal/mol (7222.2850 without restraints) Performing minimization step: 2386. Total energy = 7225.6179 kcal/mol (7219.9429 without restraints) Performing minimization step: 2387. Total energy = 7223.2749 kcal/mol (7217.6011 without restraints) Performing minimization step: 2388. Total energy = 7220.9326 kcal/mol (7215.2600 without restraints) Performing minimization step: 2389. Total energy = 7218.5910 kcal/mol (7212.9195 without restraints) Performing minimization step: 2390. Total energy = 7216.2505 kcal/mol (7210.5802 without restraints) Performing minimization step: 2391. Total energy = 7213.9102 kcal/mol (7208.2412 without restraints) Performing minimization step: 2392. Total energy = 7211.5708 kcal/mol (7205.9029 without restraints) Performing minimization step: 2393. Total energy = 7209.2321 kcal/mol (7203.5654 without restraints) Performing minimization step: 2394. Total energy = 7206.8942 kcal/mol (7201.2287 without restraints) Performing minimization step: 2395. Total energy = 7204.5568 kcal/mol (7198.8924 without restraints) Performing minimization step: 2396. Total energy = 7202.2198 kcal/mol (7196.5566 without restraints) Performing minimization step: 2397. Total energy = 7199.8838 kcal/mol (7194.2218 without restraints) Performing minimization step: 2398. Total energy = 7197.5485 kcal/mol (7191.8877 without restraints) Performing minimization step: 2399. Total energy = 7195.2138 kcal/mol (7189.5542 without restraints) Performing minimization step: 2400. Total energy = 7192.8799 kcal/mol (7187.2215 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 7190.5467 kcal/mol (7184.8894 without restraints) Performing minimization step: 2402. Total energy = 7188.2141 kcal/mol (7182.5581 without restraints) Performing minimization step: 2403. Total energy = 7185.8822 kcal/mol (7180.2272 without restraints) Performing minimization step: 2404. Total energy = 7183.5507 kcal/mol (7177.8971 without restraints) Performing minimization step: 2405. Total energy = 7181.2204 kcal/mol (7175.5679 without restraints) Performing minimization step: 2406. Total energy = 7178.8908 kcal/mol (7173.2394 without restraints) Performing minimization step: 2407. Total energy = 7176.5621 kcal/mol (7170.9118 without restraints) Performing minimization step: 2408. Total energy = 7174.2335 kcal/mol (7168.5845 without restraints) Performing minimization step: 2409. Total energy = 7171.9065 kcal/mol (7166.2587 without restraints) Performing minimization step: 2410. Total energy = 7169.5798 kcal/mol (7163.9332 without restraints) Performing minimization step: 2411. Total energy = 7167.2537 kcal/mol (7161.6082 without restraints) Performing minimization step: 2412. Total energy = 7164.9285 kcal/mol (7159.2842 without restraints) Performing minimization step: 2413. Total energy = 7162.6039 kcal/mol (7156.9607 without restraints) Performing minimization step: 2414. Total energy = 7160.2800 kcal/mol (7154.6380 without restraints) Performing minimization step: 2415. Total energy = 7157.9569 kcal/mol (7152.3161 without restraints) Performing minimization step: 2416. Total energy = 7155.6343 kcal/mol (7149.9946 without restraints) Performing minimization step: 2417. Total energy = 7153.3127 kcal/mol (7147.6742 without restraints) Performing minimization step: 2418. Total energy = 7150.9916 kcal/mol (7145.3543 without restraints) Performing minimization step: 2419. Total energy = 7148.6715 kcal/mol (7143.0353 without restraints) Performing minimization step: 2420. Total energy = 7146.3521 kcal/mol (7140.7172 without restraints) Performing minimization step: 2421. Total energy = 7144.0333 kcal/mol (7138.3995 without restraints) Performing minimization step: 2422. Total energy = 7141.7152 kcal/mol (7136.0826 without restraints) Performing minimization step: 2423. Total energy = 7139.3981 kcal/mol (7133.7666 without restraints) Performing minimization step: 2424. Total energy = 7137.0818 kcal/mol (7131.4516 without restraints) Performing minimization step: 2425. Total energy = 7134.7659 kcal/mol (7129.1369 without restraints) Performing minimization step: 2426. Total energy = 7132.4507 kcal/mol (7126.8228 without restraints) Performing minimization step: 2427. Total energy = 7130.1364 kcal/mol (7124.5097 without restraints) Performing minimization step: 2428. Total energy = 7127.8228 kcal/mol (7122.1972 without restraints) Performing minimization step: 2429. Total energy = 7125.5100 kcal/mol (7119.8856 without restraints) Performing minimization step: 2430. Total energy = 7123.1978 kcal/mol (7117.5746 without restraints) Performing minimization step: 2431. Total energy = 7120.8866 kcal/mol (7115.2645 without restraints) Performing minimization step: 2432. Total energy = 7118.5756 kcal/mol (7112.9547 without restraints) Performing minimization step: 2433. Total energy = 7116.2658 kcal/mol (7110.6462 without restraints) Performing minimization step: 2434. Total energy = 7113.9573 kcal/mol (7108.3387 without restraints) Performing minimization step: 2435. Total energy = 7111.6487 kcal/mol (7106.0314 without restraints) Performing minimization step: 2436. Total energy = 7109.3411 kcal/mol (7103.7248 without restraints) Performing minimization step: 2437. Total energy = 7107.0341 kcal/mol (7101.4190 without restraints) Performing minimization step: 2438. Total energy = 7104.7282 kcal/mol (7099.1143 without restraints) Performing minimization step: 2439. Total energy = 7102.4226 kcal/mol (7096.8099 without restraints) Performing minimization step: 2440. Total energy = 7100.1179 kcal/mol (7094.5063 without restraints) Performing minimization step: 2441. Total energy = 7097.8135 kcal/mol (7092.2031 without restraints) Performing minimization step: 2442. Total energy = 7095.5104 kcal/mol (7089.9011 without restraints) Performing minimization step: 2443. Total energy = 7093.2078 kcal/mol (7087.5998 without restraints) Performing minimization step: 2444. Total energy = 7090.9061 kcal/mol (7085.2992 without restraints) Performing minimization step: 2445. Total energy = 7088.6053 kcal/mol (7082.9995 without restraints) Performing minimization step: 2446. Total energy = 7086.3052 kcal/mol (7080.7006 without restraints) Performing minimization step: 2447. Total energy = 7084.0065 kcal/mol (7078.4033 without restraints) Performing minimization step: 2448. Total energy = 7081.7085 kcal/mol (7076.1063 without restraints) Performing minimization step: 2449. Total energy = 7079.4107 kcal/mol (7073.8096 without restraints) Performing minimization step: 2450. Total energy = 7077.1139 kcal/mol (7071.5139 without restraints) Performing minimization step: 2451. Total energy = 7074.8174 kcal/mol (7069.2186 without restraints) Performing minimization step: 2452. Total energy = 7072.5222 kcal/mol (7066.9246 without restraints) Performing minimization step: 2453. Total energy = 7070.2274 kcal/mol (7064.6308 without restraints) Performing minimization step: 2454. Total energy = 7067.9336 kcal/mol (7062.3383 without restraints) Performing minimization step: 2455. Total energy = 7065.6405 kcal/mol (7060.0464 without restraints) Performing minimization step: 2456. Total energy = 7063.3484 kcal/mol (7057.7554 without restraints) Performing minimization step: 2457. Total energy = 7061.0567 kcal/mol (7055.4649 without restraints) Performing minimization step: 2458. Total energy = 7058.7659 kcal/mol (7053.1752 without restraints) Performing minimization step: 2459. Total energy = 7056.4764 kcal/mol (7050.8869 without restraints) Performing minimization step: 2460. Total energy = 7054.1872 kcal/mol (7048.5988 without restraints) Performing minimization step: 2461. Total energy = 7051.8993 kcal/mol (7046.3123 without restraints) Performing minimization step: 2462. Total energy = 7049.6122 kcal/mol (7044.0262 without restraints) Performing minimization step: 2463. Total energy = 7047.3255 kcal/mol (7041.7405 without restraints) Performing minimization step: 2464. Total energy = 7045.0395 kcal/mol (7039.4556 without restraints) Performing minimization step: 2465. Total energy = 7042.7541 kcal/mol (7037.1716 without restraints) Performing minimization step: 2466. Total energy = 7040.4697 kcal/mol (7034.8883 without restraints) Performing minimization step: 2467. Total energy = 7038.1862 kcal/mol (7032.6060 without restraints) Performing minimization step: 2468. Total energy = 7035.9034 kcal/mol (7030.3243 without restraints) Performing minimization step: 2469. Total energy = 7033.6219 kcal/mol (7028.0440 without restraints) Performing minimization step: 2470. Total energy = 7031.3407 kcal/mol (7025.7641 without restraints) Performing minimization step: 2471. Total energy = 7029.0605 kcal/mol (7023.4849 without restraints) Performing minimization step: 2472. Total energy = 7026.7810 kcal/mol (7021.2065 without restraints) Performing minimization step: 2473. Total energy = 7024.5025 kcal/mol (7018.9292 without restraints) Performing minimization step: 2474. Total energy = 7022.2248 kcal/mol (7016.6526 without restraints) Performing minimization step: 2475. Total energy = 7019.9480 kcal/mol (7014.3772 without restraints) Performing minimization step: 2476. Total energy = 7017.6719 kcal/mol (7012.1021 without restraints) Performing minimization step: 2477. Total energy = 7015.3960 kcal/mol (7009.8274 without restraints) Performing minimization step: 2478. Total energy = 7013.1215 kcal/mol (7007.5540 without restraints) Performing minimization step: 2479. Total energy = 7010.8479 kcal/mol (7005.2816 without restraints) Performing minimization step: 2480. Total energy = 7008.5753 kcal/mol (7003.0103 without restraints) Performing minimization step: 2481. Total energy = 7006.3036 kcal/mol (7000.7397 without restraints) Performing minimization step: 2482. Total energy = 7004.0324 kcal/mol (6998.4696 without restraints) Performing minimization step: 2483. Total energy = 7001.7622 kcal/mol (6996.2005 without restraints) Performing minimization step: 2484. Total energy = 6999.4925 kcal/mol (6993.9320 without restraints) Performing minimization step: 2485. Total energy = 6997.2241 kcal/mol (6991.6647 without restraints) Performing minimization step: 2486. Total energy = 6994.9562 kcal/mol (6989.3980 without restraints) Performing minimization step: 2487. Total energy = 6992.6894 kcal/mol (6987.1324 without restraints) Performing minimization step: 2488. Total energy = 6990.4233 kcal/mol (6984.8674 without restraints) Performing minimization step: 2489. Total energy = 6988.1579 kcal/mol (6982.6031 without restraints) Performing minimization step: 2490. Total energy = 6985.8938 kcal/mol (6980.3403 without restraints) Performing minimization step: 2491. Total energy = 6983.6301 kcal/mol (6978.0777 without restraints) Performing minimization step: 2492. Total energy = 6981.3674 kcal/mol (6975.8164 without restraints) Performing minimization step: 2493. Total energy = 6979.1058 kcal/mol (6973.5556 without restraints) Performing minimization step: 2494. Total energy = 6976.8447 kcal/mol (6971.2958 without restraints) Performing minimization step: 2495. Total energy = 6974.5847 kcal/mol (6969.0368 without restraints) Performing minimization step: 2496. Total energy = 6972.3254 kcal/mol (6966.7788 without restraints) Performing minimization step: 2497. Total energy = 6970.0669 kcal/mol (6964.5213 without restraints) Performing minimization step: 2498. Total energy = 6967.8091 kcal/mol (6962.2647 without restraints) Performing minimization step: 2499. Total energy = 6965.5523 kcal/mol (6960.0092 without restraints) Performing minimization step: 2500. Total energy = 6963.2962 kcal/mol (6957.7541 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 6961.0412 kcal/mol (6955.5002 without restraints) Performing minimization step: 2502. Total energy = 6958.7872 kcal/mol (6953.2474 without restraints) Performing minimization step: 2503. Total energy = 6956.5340 kcal/mol (6950.9954 without restraints) Performing minimization step: 2504. Total energy = 6954.2813 kcal/mol (6948.7437 without restraints) Performing minimization step: 2505. Total energy = 6952.0297 kcal/mol (6946.4934 without restraints) Performing minimization step: 2506. Total energy = 6949.7791 kcal/mol (6944.2440 without restraints) Performing minimization step: 2507. Total energy = 6947.5293 kcal/mol (6941.9953 without restraints) Performing minimization step: 2508. Total energy = 6945.2805 kcal/mol (6939.7477 without restraints) Performing minimization step: 2509. Total energy = 6943.0327 kcal/mol (6937.5011 without restraints) Performing minimization step: 2510. Total energy = 6940.7860 kcal/mol (6935.2554 without restraints) Performing minimization step: 2511. Total energy = 6938.5398 kcal/mol (6933.0104 without restraints) Performing minimization step: 2512. Total energy = 6936.2942 kcal/mol (6930.7659 without restraints) Performing minimization step: 2513. Total energy = 6934.0496 kcal/mol (6928.5226 without restraints) Performing minimization step: 2514. Total energy = 6931.8064 kcal/mol (6926.2805 without restraints) Performing minimization step: 2515. Total energy = 6929.5637 kcal/mol (6924.0389 without restraints) Performing minimization step: 2516. Total energy = 6927.3219 kcal/mol (6921.7982 without restraints) Performing minimization step: 2517. Total energy = 6925.0811 kcal/mol (6919.5586 without restraints) Performing minimization step: 2518. Total energy = 6922.8412 kcal/mol (6917.3198 without restraints) Performing minimization step: 2519. Total energy = 6920.6021 kcal/mol (6915.0819 without restraints) Performing minimization step: 2520. Total energy = 6918.3648 kcal/mol (6912.8457 without restraints) Performing minimization step: 2521. Total energy = 6916.1271 kcal/mol (6910.6092 without restraints) Performing minimization step: 2522. Total energy = 6913.8908 kcal/mol (6908.3740 without restraints) Performing minimization step: 2523. Total energy = 6911.6551 kcal/mol (6906.1395 without restraints) Performing minimization step: 2524. Total energy = 6909.4206 kcal/mol (6903.9062 without restraints) Performing minimization step: 2525. Total energy = 6907.1871 kcal/mol (6901.6738 without restraints) Performing minimization step: 2526. Total energy = 6904.9547 kcal/mol (6899.4425 without restraints) Performing minimization step: 2527. Total energy = 6902.7233 kcal/mol (6897.2124 without restraints) Performing minimization step: 2528. Total energy = 6900.4923 kcal/mol (6894.9825 without restraints) Performing minimization step: 2529. Total energy = 6898.2625 kcal/mol (6892.7538 without restraints) Performing minimization step: 2530. Total energy = 6896.0338 kcal/mol (6890.5262 without restraints) Performing minimization step: 2531. Total energy = 6893.8058 kcal/mol (6888.2994 without restraints) Performing minimization step: 2532. Total energy = 6891.5787 kcal/mol (6886.0735 without restraints) Performing minimization step: 2533. Total energy = 6889.3528 kcal/mol (6883.8486 without restraints) Performing minimization step: 2534. Total energy = 6887.1275 kcal/mol (6881.6246 without restraints) Performing minimization step: 2535. Total energy = 6884.9033 kcal/mol (6879.4015 without restraints) Performing minimization step: 2536. Total energy = 6882.6798 kcal/mol (6877.1792 without restraints) Performing minimization step: 2537. Total energy = 6880.4577 kcal/mol (6874.9582 without restraints) Performing minimization step: 2538. Total energy = 6878.2365 kcal/mol (6872.7382 without restraints) Performing minimization step: 2539. Total energy = 6876.0161 kcal/mol (6870.5190 without restraints) Performing minimization step: 2540. Total energy = 6873.7967 kcal/mol (6868.3007 without restraints) Performing minimization step: 2541. Total energy = 6871.5784 kcal/mol (6866.0835 without restraints) Performing minimization step: 2542. Total energy = 6869.3607 kcal/mol (6863.8670 without restraints) Performing minimization step: 2543. Total energy = 6867.1439 kcal/mol (6861.6512 without restraints) Performing minimization step: 2544. Total energy = 6864.9282 kcal/mol (6859.4367 without restraints) Performing minimization step: 2545. Total energy = 6862.7138 kcal/mol (6857.2235 without restraints) Performing minimization step: 2546. Total energy = 6860.5004 kcal/mol (6855.0113 without restraints) Performing minimization step: 2547. Total energy = 6858.2883 kcal/mol (6852.8004 without restraints) Performing minimization step: 2548. Total energy = 6856.0769 kcal/mol (6850.5901 without restraints) Performing minimization step: 2549. Total energy = 6853.8663 kcal/mol (6848.3806 without restraints) Performing minimization step: 2550. Total energy = 6851.6566 kcal/mol (6846.1721 without restraints) Performing minimization step: 2551. Total energy = 6849.4479 kcal/mol (6843.9646 without restraints) Performing minimization step: 2552. Total energy = 6847.2402 kcal/mol (6841.7580 without restraints) Performing minimization step: 2553. Total energy = 6845.0337 kcal/mol (6839.5526 without restraints) Performing minimization step: 2554. Total energy = 6842.8280 kcal/mol (6837.3480 without restraints) Performing minimization step: 2555. Total energy = 6840.6236 kcal/mol (6835.1449 without restraints) Performing minimization step: 2556. Total energy = 6838.4200 kcal/mol (6832.9423 without restraints) Performing minimization step: 2557. Total energy = 6836.2174 kcal/mol (6830.7410 without restraints) Performing minimization step: 2558. Total energy = 6834.0162 kcal/mol (6828.5408 without restraints) Performing minimization step: 2559. Total energy = 6831.8152 kcal/mol (6826.3410 without restraints) Performing minimization step: 2560. Total energy = 6829.6157 kcal/mol (6824.1427 without restraints) Performing minimization step: 2561. Total energy = 6827.4175 kcal/mol (6821.9457 without restraints) Performing minimization step: 2562. Total energy = 6825.2198 kcal/mol (6819.7491 without restraints) Performing minimization step: 2563. Total energy = 6823.0232 kcal/mol (6817.5536 without restraints) Performing minimization step: 2564. Total energy = 6820.8274 kcal/mol (6815.3589 without restraints) Performing minimization step: 2565. Total energy = 6818.6328 kcal/mol (6813.1655 without restraints) Performing minimization step: 2566. Total energy = 6816.4394 kcal/mol (6810.9733 without restraints) Performing minimization step: 2567. Total energy = 6814.2473 kcal/mol (6808.7824 without restraints) Performing minimization step: 2568. Total energy = 6812.0558 kcal/mol (6806.5920 without restraints) Performing minimization step: 2569. Total energy = 6809.8651 kcal/mol (6804.4024 without restraints) Performing minimization step: 2570. Total energy = 6807.6758 kcal/mol (6802.2143 without restraints) Performing minimization step: 2571. Total energy = 6805.4874 kcal/mol (6800.0270 without restraints) Performing minimization step: 2572. Total energy = 6803.2998 kcal/mol (6797.8406 without restraints) Performing minimization step: 2573. Total energy = 6801.1139 kcal/mol (6795.6559 without restraints) Performing minimization step: 2574. Total energy = 6798.9287 kcal/mol (6793.4718 without restraints) Performing minimization step: 2575. Total energy = 6796.7446 kcal/mol (6791.2888 without restraints) Performing minimization step: 2576. Total energy = 6794.5614 kcal/mol (6789.1068 without restraints) Performing minimization step: 2577. Total energy = 6792.3794 kcal/mol (6786.9259 without restraints) Performing minimization step: 2578. Total energy = 6790.1984 kcal/mol (6784.7462 without restraints) Performing minimization step: 2579. Total energy = 6788.0183 kcal/mol (6782.5671 without restraints) Performing minimization step: 2580. Total energy = 6785.8396 kcal/mol (6780.3896 without restraints) Performing minimization step: 2581. Total energy = 6783.6617 kcal/mol (6778.2129 without restraints) Performing minimization step: 2582. Total energy = 6781.4852 kcal/mol (6776.0376 without restraints) Performing minimization step: 2583. Total energy = 6779.3096 kcal/mol (6773.8631 without restraints) Performing minimization step: 2584. Total energy = 6777.1350 kcal/mol (6771.6896 without restraints) Performing minimization step: 2585. Total energy = 6774.9615 kcal/mol (6769.5172 without restraints) Performing minimization step: 2586. Total energy = 6772.7891 kcal/mol (6767.3460 without restraints) Performing minimization step: 2587. Total energy = 6770.6178 kcal/mol (6765.1760 without restraints) Performing minimization step: 2588. Total energy = 6768.4477 kcal/mol (6763.0069 without restraints) Performing minimization step: 2589. Total energy = 6766.2785 kcal/mol (6760.8388 without restraints) Performing minimization step: 2590. Total energy = 6764.1103 kcal/mol (6758.6718 without restraints) Performing minimization step: 2591. Total energy = 6761.9433 kcal/mol (6756.5059 without restraints) Performing minimization step: 2592. Total energy = 6759.7771 kcal/mol (6754.3408 without restraints) Performing minimization step: 2593. Total energy = 6757.6125 kcal/mol (6752.1774 without restraints) Performing minimization step: 2594. Total energy = 6755.4490 kcal/mol (6750.0151 without restraints) Performing minimization step: 2595. Total energy = 6753.2861 kcal/mol (6747.8534 without restraints) Performing minimization step: 2596. Total energy = 6751.1242 kcal/mol (6745.6926 without restraints) Performing minimization step: 2597. Total energy = 6748.9637 kcal/mol (6743.5332 without restraints) Performing minimization step: 2598. Total energy = 6746.8048 kcal/mol (6741.3755 without restraints) Performing minimization step: 2599. Total energy = 6744.6466 kcal/mol (6739.2185 without restraints) Performing minimization step: 2600. Total energy = 6742.4896 kcal/mol (6737.0626 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 6740.3339 kcal/mol (6734.9080 without restraints) Performing minimization step: 2602. Total energy = 6738.1790 kcal/mol (6732.7543 without restraints) Performing minimization step: 2603. Total energy = 6736.0256 kcal/mol (6730.6020 without restraints) Performing minimization step: 2604. Total energy = 6733.8730 kcal/mol (6728.4507 without restraints) Performing minimization step: 2605. Total energy = 6731.7216 kcal/mol (6726.3002 without restraints) Performing minimization step: 2606. Total energy = 6729.5710 kcal/mol (6724.1509 without restraints) Performing minimization step: 2607. Total energy = 6727.4223 kcal/mol (6722.0034 without restraints) Performing minimization step: 2608. Total energy = 6725.2747 kcal/mol (6719.8569 without restraints) Performing minimization step: 2609. Total energy = 6723.1278 kcal/mol (6717.7112 without restraints) Performing minimization step: 2610. Total energy = 6720.9821 kcal/mol (6715.5667 without restraints) Performing minimization step: 2611. Total energy = 6718.8377 kcal/mol (6713.4233 without restraints) Performing minimization step: 2612. Total energy = 6716.6944 kcal/mol (6711.2813 without restraints) Performing minimization step: 2613. Total energy = 6714.5523 kcal/mol (6709.1403 without restraints) Performing minimization step: 2614. Total energy = 6712.4117 kcal/mol (6707.0008 without restraints) Performing minimization step: 2615. Total energy = 6710.2716 kcal/mol (6704.8619 without restraints) Performing minimization step: 2616. Total energy = 6708.1329 kcal/mol (6702.7243 without restraints) Performing minimization step: 2617. Total energy = 6705.9954 kcal/mol (6700.5881 without restraints) Performing minimization step: 2618. Total energy = 6703.8592 kcal/mol (6698.4530 without restraints) Performing minimization step: 2619. Total energy = 6701.7241 kcal/mol (6696.3190 without restraints) Performing minimization step: 2620. Total energy = 6699.5901 kcal/mol (6694.1862 without restraints) Performing minimization step: 2621. Total energy = 6697.4574 kcal/mol (6692.0547 without restraints) Performing minimization step: 2622. Total energy = 6695.3258 kcal/mol (6689.9242 without restraints) Performing minimization step: 2623. Total energy = 6693.1952 kcal/mol (6687.7947 without restraints) Performing minimization step: 2624. Total energy = 6691.0657 kcal/mol (6685.6664 without restraints) Performing minimization step: 2625. Total energy = 6688.9374 kcal/mol (6683.5392 without restraints) Performing minimization step: 2626. Total energy = 6686.8105 kcal/mol (6681.4135 without restraints) Performing minimization step: 2627. Total energy = 6684.6849 kcal/mol (6679.2892 without restraints) Performing minimization step: 2628. Total energy = 6682.5607 kcal/mol (6677.1660 without restraints) Performing minimization step: 2629. Total energy = 6680.4381 kcal/mol (6675.0446 without restraints) Performing minimization step: 2630. Total energy = 6678.3160 kcal/mol (6672.9236 without restraints) Performing minimization step: 2631. Total energy = 6676.1951 kcal/mol (6670.8039 without restraints) Performing minimization step: 2632. Total energy = 6674.0754 kcal/mol (6668.6854 without restraints) Performing minimization step: 2633. Total energy = 6671.9571 kcal/mol (6666.5683 without restraints) Performing minimization step: 2634. Total energy = 6669.8399 kcal/mol (6664.4522 without restraints) Performing minimization step: 2635. Total energy = 6667.7240 kcal/mol (6662.3376 without restraints) Performing minimization step: 2636. Total energy = 6665.6093 kcal/mol (6660.2239 without restraints) Performing minimization step: 2637. Total energy = 6663.4958 kcal/mol (6658.1116 without restraints) Performing minimization step: 2638. Total energy = 6661.3834 kcal/mol (6656.0004 without restraints) Performing minimization step: 2639. Total energy = 6659.2723 kcal/mol (6653.8903 without restraints) Performing minimization step: 2640. Total energy = 6657.1625 kcal/mol (6651.7818 without restraints) Performing minimization step: 2641. Total energy = 6655.0543 kcal/mol (6649.6748 without restraints) Performing minimization step: 2642. Total energy = 6652.9470 kcal/mol (6647.5685 without restraints) Performing minimization step: 2643. Total energy = 6650.8406 kcal/mol (6645.4633 without restraints) Performing minimization step: 2644. Total energy = 6648.7355 kcal/mol (6643.3594 without restraints) Performing minimization step: 2645. Total energy = 6646.6320 kcal/mol (6641.2570 without restraints) Performing minimization step: 2646. Total energy = 6644.5295 kcal/mol (6639.1556 without restraints) Performing minimization step: 2647. Total energy = 6642.4289 kcal/mol (6637.0563 without restraints) Performing minimization step: 2648. Total energy = 6640.3293 kcal/mol (6634.9578 without restraints) Performing minimization step: 2649. Total energy = 6638.2305 kcal/mol (6632.8601 without restraints) Performing minimization step: 2650. Total energy = 6636.1331 kcal/mol (6630.7639 without restraints) Performing minimization step: 2651. Total energy = 6634.0371 kcal/mol (6628.6691 without restraints) Performing minimization step: 2652. Total energy = 6631.9432 kcal/mol (6626.5763 without restraints) Performing minimization step: 2653. Total energy = 6629.8497 kcal/mol (6624.4840 without restraints) Performing minimization step: 2654. Total energy = 6627.7575 kcal/mol (6622.3929 without restraints) Performing minimization step: 2655. Total energy = 6625.6666 kcal/mol (6620.3034 without restraints) Performing minimization step: 2656. Total energy = 6623.5771 kcal/mol (6618.2149 without restraints) Performing minimization step: 2657. Total energy = 6621.4887 kcal/mol (6616.1276 without restraints) Performing minimization step: 2658. Total energy = 6619.4015 kcal/mol (6614.0417 without restraints) Performing minimization step: 2659. Total energy = 6617.3157 kcal/mol (6611.9570 without restraints) Performing minimization step: 2660. Total energy = 6615.2311 kcal/mol (6609.8736 without restraints) Performing minimization step: 2661. Total energy = 6613.1479 kcal/mol (6607.7915 without restraints) Performing minimization step: 2662. Total energy = 6611.0662 kcal/mol (6605.7109 without restraints) Performing minimization step: 2663. Total energy = 6608.9853 kcal/mol (6603.6313 without restraints) Performing minimization step: 2664. Total energy = 6606.9058 kcal/mol (6601.5529 without restraints) Performing minimization step: 2665. Total energy = 6604.8278 kcal/mol (6599.4761 without restraints) Performing minimization step: 2666. Total energy = 6602.7511 kcal/mol (6597.4005 without restraints) Performing minimization step: 2667. Total energy = 6600.6759 kcal/mol (6595.3265 without restraints) Performing minimization step: 2668. Total energy = 6598.6018 kcal/mol (6593.2535 without restraints) Performing minimization step: 2669. Total energy = 6596.5290 kcal/mol (6591.1819 without restraints) Performing minimization step: 2670. Total energy = 6594.4575 kcal/mol (6589.1115 without restraints) Performing minimization step: 2671. Total energy = 6592.3875 kcal/mol (6587.0427 without restraints) Performing minimization step: 2672. Total energy = 6590.3187 kcal/mol (6584.9751 without restraints) Performing minimization step: 2673. Total energy = 6588.2512 kcal/mol (6582.9088 without restraints) Performing minimization step: 2674. Total energy = 6586.1852 kcal/mol (6580.8439 without restraints) Performing minimization step: 2675. Total energy = 6584.1202 kcal/mol (6578.7801 without restraints) Performing minimization step: 2676. Total energy = 6582.0570 kcal/mol (6576.7181 without restraints) Performing minimization step: 2677. Total energy = 6579.9949 kcal/mol (6574.6571 without restraints) Performing minimization step: 2678. Total energy = 6577.9343 kcal/mol (6572.5977 without restraints) Performing minimization step: 2679. Total energy = 6575.8743 kcal/mol (6570.5388 without restraints) Performing minimization step: 2680. Total energy = 6573.8164 kcal/mol (6568.4821 without restraints) Performing minimization step: 2681. Total energy = 6571.7597 kcal/mol (6566.4266 without restraints) Performing minimization step: 2682. Total energy = 6569.7043 kcal/mol (6564.3724 without restraints) Performing minimization step: 2683. Total energy = 6567.6503 kcal/mol (6562.3196 without restraints) Performing minimization step: 2684. Total energy = 6565.5978 kcal/mol (6560.2682 without restraints) Performing minimization step: 2685. Total energy = 6563.5467 kcal/mol (6558.2183 without restraints) Performing minimization step: 2686. Total energy = 6561.4968 kcal/mol (6556.1695 without restraints) Performing minimization step: 2687. Total energy = 6559.4482 kcal/mol (6554.1221 without restraints) Performing minimization step: 2688. Total energy = 6557.4010 kcal/mol (6552.0761 without restraints) Performing minimization step: 2689. Total energy = 6555.3553 kcal/mol (6550.0315 without restraints) Performing minimization step: 2690. Total energy = 6553.3109 kcal/mol (6547.9884 without restraints) Performing minimization step: 2691. Total energy = 6551.2679 kcal/mol (6545.9465 without restraints) Performing minimization step: 2692. Total energy = 6549.2263 kcal/mol (6543.9061 without restraints) Performing minimization step: 2693. Total energy = 6547.1861 kcal/mol (6541.8670 without restraints) Performing minimization step: 2694. Total energy = 6545.1471 kcal/mol (6539.8293 without restraints) Performing minimization step: 2695. Total energy = 6543.1097 kcal/mol (6537.7930 without restraints) Performing minimization step: 2696. Total energy = 6541.0736 kcal/mol (6535.7580 without restraints) Performing minimization step: 2697. Total energy = 6539.0386 kcal/mol (6533.7243 without restraints) Performing minimization step: 2698. Total energy = 6537.0055 kcal/mol (6531.6924 without restraints) Performing minimization step: 2699. Total energy = 6534.9739 kcal/mol (6529.6618 without restraints) Performing minimization step: 2700. Total energy = 6532.9434 kcal/mol (6527.6326 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 6530.9143 kcal/mol (6525.6047 without restraints) Performing minimization step: 2702. Total energy = 6528.8866 kcal/mol (6523.5781 without restraints) Performing minimization step: 2703. Total energy = 6526.8608 kcal/mol (6521.5536 without restraints) Performing minimization step: 2704. Total energy = 6524.8362 kcal/mol (6519.5300 without restraints) Performing minimization step: 2705. Total energy = 6522.8128 kcal/mol (6517.5078 without restraints) Performing minimization step: 2706. Total energy = 6520.7908 kcal/mol (6515.4870 without restraints) Performing minimization step: 2707. Total energy = 6518.7702 kcal/mol (6513.4676 without restraints) Performing minimization step: 2708. Total energy = 6516.7514 kcal/mol (6511.4501 without restraints) Performing minimization step: 2709. Total energy = 6514.7336 kcal/mol (6509.4333 without restraints) Performing minimization step: 2710. Total energy = 6512.7176 kcal/mol (6507.4185 without restraints) Performing minimization step: 2711. Total energy = 6510.7027 kcal/mol (6505.4048 without restraints) Performing minimization step: 2712. Total energy = 6508.6894 kcal/mol (6503.3927 without restraints) Performing minimization step: 2713. Total energy = 6506.6774 kcal/mol (6501.3818 without restraints) Performing minimization step: 2714. Total energy = 6504.6671 kcal/mol (6499.3728 without restraints) Performing minimization step: 2715. Total energy = 6502.6579 kcal/mol (6497.3646 without restraints) Performing minimization step: 2716. Total energy = 6500.6502 kcal/mol (6495.3582 without restraints) Performing minimization step: 2717. Total energy = 6498.6442 kcal/mol (6493.3533 without restraints) Performing minimization step: 2718. Total energy = 6496.6394 kcal/mol (6491.3497 without restraints) Performing minimization step: 2719. Total energy = 6494.6360 kcal/mol (6489.3474 without restraints) Performing minimization step: 2720. Total energy = 6492.6340 kcal/mol (6487.3466 without restraints) Performing minimization step: 2721. Total energy = 6490.6338 kcal/mol (6485.3477 without restraints) Performing minimization step: 2722. Total energy = 6488.6347 kcal/mol (6483.3497 without restraints) Performing minimization step: 2723. Total energy = 6486.6373 kcal/mol (6481.3535 without restraints) Performing minimization step: 2724. Total energy = 6484.6413 kcal/mol (6479.3587 without restraints) Performing minimization step: 2725. Total energy = 6482.6472 kcal/mol (6477.3659 without restraints) Performing minimization step: 2726. Total energy = 6480.6542 kcal/mol (6475.3738 without restraints) Performing minimization step: 2727. Total energy = 6478.6627 kcal/mol (6473.3836 without restraints) Performing minimization step: 2728. Total energy = 6476.6725 kcal/mol (6471.3946 without restraints) Performing minimization step: 2729. Total energy = 6474.6839 kcal/mol (6469.4072 without restraints) Performing minimization step: 2730. Total energy = 6472.6969 kcal/mol (6467.4215 without restraints) Performing minimization step: 2731. Total energy = 6470.7112 kcal/mol (6465.4369 without restraints) Performing minimization step: 2732. Total energy = 6468.7271 kcal/mol (6463.4539 without restraints) Performing minimization step: 2733. Total energy = 6466.7444 kcal/mol (6461.4724 without restraints) Performing minimization step: 2734. Total energy = 6464.7633 kcal/mol (6459.4925 without restraints) Performing minimization step: 2735. Total energy = 6462.7839 kcal/mol (6457.5142 without restraints) Performing minimization step: 2736. Total energy = 6460.8061 kcal/mol (6455.5382 without restraints) Performing minimization step: 2737. Total energy = 6458.8299 kcal/mol (6453.5627 without restraints) Performing minimization step: 2738. Total energy = 6456.8546 kcal/mol (6451.5884 without restraints) Performing minimization step: 2739. Total energy = 6454.8805 kcal/mol (6449.6156 without restraints) Performing minimization step: 2740. Total energy = 6452.9080 kcal/mol (6447.6443 without restraints) Performing minimization step: 2741. Total energy = 6450.9372 kcal/mol (6445.6745 without restraints) Performing minimization step: 2742. Total energy = 6448.9679 kcal/mol (6443.7065 without restraints) Performing minimization step: 2743. Total energy = 6447.0002 kcal/mol (6441.7402 without restraints) Performing minimization step: 2744. Total energy = 6445.0344 kcal/mol (6439.7754 without restraints) Performing minimization step: 2745. Total energy = 6443.0699 kcal/mol (6437.8121 without restraints) Performing minimization step: 2746. Total energy = 6441.1067 kcal/mol (6435.8501 without restraints) Performing minimization step: 2747. Total energy = 6439.1453 kcal/mol (6433.8898 without restraints) Performing minimization step: 2748. Total energy = 6437.1854 kcal/mol (6431.9311 without restraints) Performing minimization step: 2749. Total energy = 6435.2268 kcal/mol (6429.9737 without restraints) Performing minimization step: 2750. Total energy = 6433.2702 kcal/mol (6428.0183 without restraints) Performing minimization step: 2751. Total energy = 6431.3141 kcal/mol (6426.0634 without restraints) Performing minimization step: 2752. Total energy = 6429.3601 kcal/mol (6424.1106 without restraints) Performing minimization step: 2753. Total energy = 6427.4079 kcal/mol (6422.1596 without restraints) Performing minimization step: 2754. Total energy = 6425.4572 kcal/mol (6420.2101 without restraints) Performing minimization step: 2755. Total energy = 6423.5080 kcal/mol (6418.2620 without restraints) Performing minimization step: 2756. Total energy = 6421.5601 kcal/mol (6416.3154 without restraints) Performing minimization step: 2757. Total energy = 6419.6139 kcal/mol (6414.3704 without restraints) Performing minimization step: 2758. Total energy = 6417.6691 kcal/mol (6412.4267 without restraints) Performing minimization step: 2759. Total energy = 6415.7258 kcal/mol (6410.4846 without restraints) Performing minimization step: 2760. Total energy = 6413.7843 kcal/mol (6408.5443 without restraints) Performing minimization step: 2761. Total energy = 6411.8438 kcal/mol (6406.6049 without restraints) Performing minimization step: 2762. Total energy = 6409.9053 kcal/mol (6404.6677 without restraints) Performing minimization step: 2763. Total energy = 6407.9683 kcal/mol (6402.7318 without restraints) Performing minimization step: 2764. Total energy = 6406.0329 kcal/mol (6400.7976 without restraints) Performing minimization step: 2765. Total energy = 6404.0992 kcal/mol (6398.8651 without restraints) Performing minimization step: 2766. Total energy = 6402.1671 kcal/mol (6396.9342 without restraints) Performing minimization step: 2767. Total energy = 6400.2360 kcal/mol (6395.0043 without restraints) Performing minimization step: 2768. Total energy = 6398.3068 kcal/mol (6393.0765 without restraints) Performing minimization step: 2769. Total energy = 6396.3795 kcal/mol (6391.1502 without restraints) Performing minimization step: 2770. Total energy = 6394.4536 kcal/mol (6389.2255 without restraints) Performing minimization step: 2771. Total energy = 6392.5291 kcal/mol (6387.3022 without restraints) Performing minimization step: 2772. Total energy = 6390.6061 kcal/mol (6385.3804 without restraints) Performing minimization step: 2773. Total energy = 6388.6848 kcal/mol (6383.4604 without restraints) Performing minimization step: 2774. Total energy = 6386.7653 kcal/mol (6381.5420 without restraints) Performing minimization step: 2775. Total energy = 6384.8473 kcal/mol (6379.6252 without restraints) Performing minimization step: 2776. Total energy = 6382.9309 kcal/mol (6377.7099 without restraints) Performing minimization step: 2777. Total energy = 6381.0160 kcal/mol (6375.7963 without restraints) Performing minimization step: 2778. Total energy = 6379.1025 kcal/mol (6373.8839 without restraints) Performing minimization step: 2779. Total energy = 6377.1906 kcal/mol (6371.9732 without restraints) Performing minimization step: 2780. Total energy = 6375.2803 kcal/mol (6370.0641 without restraints) Performing minimization step: 2781. Total energy = 6373.3715 kcal/mol (6368.1565 without restraints) Performing minimization step: 2782. Total energy = 6371.4648 kcal/mol (6366.2510 without restraints) Performing minimization step: 2783. Total energy = 6369.5594 kcal/mol (6364.3468 without restraints) Performing minimization step: 2784. Total energy = 6367.6553 kcal/mol (6362.4438 without restraints) Performing minimization step: 2785. Total energy = 6365.7530 kcal/mol (6360.5428 without restraints) Performing minimization step: 2786. Total energy = 6363.8519 kcal/mol (6358.6429 without restraints) Performing minimization step: 2787. Total energy = 6361.9530 kcal/mol (6356.7452 without restraints) Performing minimization step: 2788. Total energy = 6360.0556 kcal/mol (6354.8490 without restraints) Performing minimization step: 2789. Total energy = 6358.1600 kcal/mol (6352.9546 without restraints) Performing minimization step: 2790. Total energy = 6356.2655 kcal/mol (6351.0613 without restraints) Performing minimization step: 2791. Total energy = 6354.3730 kcal/mol (6349.1700 without restraints) Performing minimization step: 2792. Total energy = 6352.4820 kcal/mol (6347.2801 without restraints) Performing minimization step: 2793. Total energy = 6350.5927 kcal/mol (6345.3921 without restraints) Performing minimization step: 2794. Total energy = 6348.7049 kcal/mol (6343.5056 without restraints) Performing minimization step: 2795. Total energy = 6346.8186 kcal/mol (6341.6204 without restraints) Performing minimization step: 2796. Total energy = 6344.9337 kcal/mol (6339.7365 without restraints) Performing minimization step: 2797. Total energy = 6343.0501 kcal/mol (6337.8543 without restraints) Performing minimization step: 2798. Total energy = 6341.1686 kcal/mol (6335.9739 without restraints) Performing minimization step: 2799. Total energy = 6339.2885 kcal/mol (6334.0951 without restraints) Performing minimization step: 2800. Total energy = 6337.4102 kcal/mol (6332.2180 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 6335.5337 kcal/mol (6330.3428 without restraints) Performing minimization step: 2802. Total energy = 6333.6589 kcal/mol (6328.4692 without restraints) Performing minimization step: 2803. Total energy = 6331.7858 kcal/mol (6326.5972 without restraints) Performing minimization step: 2804. Total energy = 6329.9141 kcal/mol (6324.7266 without restraints) Performing minimization step: 2805. Total energy = 6328.0440 kcal/mol (6322.8579 without restraints) Performing minimization step: 2806. Total energy = 6326.1756 kcal/mol (6320.9906 without restraints) Performing minimization step: 2807. Total energy = 6324.3089 kcal/mol (6319.1251 without restraints) Performing minimization step: 2808. Total energy = 6322.4435 kcal/mol (6317.2610 without restraints) Performing minimization step: 2809. Total energy = 6320.5800 kcal/mol (6315.3986 without restraints) Performing minimization step: 2810. Total energy = 6318.7180 kcal/mol (6313.5378 without restraints) Performing minimization step: 2811. Total energy = 6316.8578 kcal/mol (6311.6788 without restraints) Performing minimization step: 2812. Total energy = 6314.9990 kcal/mol (6309.8212 without restraints) Performing minimization step: 2813. Total energy = 6313.1420 kcal/mol (6307.9656 without restraints) Performing minimization step: 2814. Total energy = 6311.2867 kcal/mol (6306.1113 without restraints) Performing minimization step: 2815. Total energy = 6309.4329 kcal/mol (6304.2588 without restraints) Performing minimization step: 2816. Total energy = 6307.5806 kcal/mol (6302.4075 without restraints) Performing minimization step: 2817. Total energy = 6305.7299 kcal/mol (6300.5581 without restraints) Performing minimization step: 2818. Total energy = 6303.8809 kcal/mol (6298.7102 without restraints) Performing minimization step: 2819. Total energy = 6302.0334 kcal/mol (6296.8641 without restraints) Performing minimization step: 2820. Total energy = 6300.1880 kcal/mol (6295.0199 without restraints) Performing minimization step: 2821. Total energy = 6298.3441 kcal/mol (6293.1771 without restraints) Performing minimization step: 2822. Total energy = 6296.5019 kcal/mol (6291.3362 without restraints) Performing minimization step: 2823. Total energy = 6294.6613 kcal/mol (6289.4967 without restraints) Performing minimization step: 2824. Total energy = 6292.8216 kcal/mol (6287.6583 without restraints) Performing minimization step: 2825. Total energy = 6290.9843 kcal/mol (6285.8222 without restraints) Performing minimization step: 2826. Total energy = 6289.1484 kcal/mol (6283.9873 without restraints) Performing minimization step: 2827. Total energy = 6287.3145 kcal/mol (6282.1546 without restraints) Performing minimization step: 2828. Total energy = 6285.4822 kcal/mol (6280.3238 without restraints) Performing minimization step: 2829. Total energy = 6283.6516 kcal/mol (6278.4942 without restraints) Performing minimization step: 2830. Total energy = 6281.8223 kcal/mol (6276.6662 without restraints) Performing minimization step: 2831. Total energy = 6279.9948 kcal/mol (6274.8399 without restraints) Performing minimization step: 2832. Total energy = 6278.1692 kcal/mol (6273.0155 without restraints) Performing minimization step: 2833. Total energy = 6276.3452 kcal/mol (6271.1927 without restraints) Performing minimization step: 2834. Total energy = 6274.5226 kcal/mol (6269.3713 without restraints) Performing minimization step: 2835. Total energy = 6272.7019 kcal/mol (6267.5518 without restraints) Performing minimization step: 2836. Total energy = 6270.8827 kcal/mol (6265.7339 without restraints) Performing minimization step: 2837. Total energy = 6269.0651 kcal/mol (6263.9175 without restraints) Performing minimization step: 2838. Total energy = 6267.2492 kcal/mol (6262.1028 without restraints) Performing minimization step: 2839. Total energy = 6265.4350 kcal/mol (6260.2898 without restraints) Performing minimization step: 2840. Total energy = 6263.6220 kcal/mol (6258.4779 without restraints) Performing minimization step: 2841. Total energy = 6261.8113 kcal/mol (6256.6685 without restraints) Performing minimization step: 2842. Total energy = 6260.0023 kcal/mol (6254.8607 without restraints) Performing minimization step: 2843. Total energy = 6258.1948 kcal/mol (6253.0544 without restraints) Performing minimization step: 2844. Total energy = 6256.3889 kcal/mol (6251.2497 without restraints) Performing minimization step: 2845. Total energy = 6254.5848 kcal/mol (6249.4469 without restraints) Performing minimization step: 2846. Total energy = 6252.7822 kcal/mol (6247.6455 without restraints) Performing minimization step: 2847. Total energy = 6250.9814 kcal/mol (6245.8459 without restraints) Performing minimization step: 2848. Total energy = 6249.1824 kcal/mol (6244.0480 without restraints) Performing minimization step: 2849. Total energy = 6247.3847 kcal/mol (6242.2516 without restraints) Performing minimization step: 2850. Total energy = 6245.5888 kcal/mol (6240.4569 without restraints) Performing minimization step: 2851. Total energy = 6243.7950 kcal/mol (6238.6644 without restraints) Performing minimization step: 2852. Total energy = 6242.0025 kcal/mol (6236.8730 without restraints) Performing minimization step: 2853. Total energy = 6240.2119 kcal/mol (6235.0836 without restraints) Performing minimization step: 2854. Total energy = 6238.4227 kcal/mol (6233.2956 without restraints) Performing minimization step: 2855. Total energy = 6236.6351 kcal/mol (6231.5093 without restraints) Performing minimization step: 2856. Total energy = 6234.8492 kcal/mol (6229.7246 without restraints) Performing minimization step: 2857. Total energy = 6233.0652 kcal/mol (6227.9418 without restraints) Performing minimization step: 2858. Total energy = 6231.2827 kcal/mol (6226.1605 without restraints) Performing minimization step: 2859. Total energy = 6229.5018 kcal/mol (6224.3808 without restraints) Performing minimization step: 2860. Total energy = 6227.7226 kcal/mol (6222.6028 without restraints) Performing minimization step: 2861. Total energy = 6225.9451 kcal/mol (6220.8266 without restraints) Performing minimization step: 2862. Total energy = 6224.1693 kcal/mol (6219.0520 without restraints) Performing minimization step: 2863. Total energy = 6222.3953 kcal/mol (6217.2791 without restraints) Performing minimization step: 2864. Total energy = 6220.6227 kcal/mol (6215.5078 without restraints) Performing minimization step: 2865. Total energy = 6218.8519 kcal/mol (6213.7381 without restraints) Performing minimization step: 2866. Total energy = 6217.0827 kcal/mol (6211.9702 without restraints) Performing minimization step: 2867. Total energy = 6215.3153 kcal/mol (6210.2040 without restraints) Performing minimization step: 2868. Total energy = 6213.5495 kcal/mol (6208.4394 without restraints) Performing minimization step: 2869. Total energy = 6211.7854 kcal/mol (6206.6765 without restraints) Performing minimization step: 2870. Total energy = 6210.0230 kcal/mol (6204.9153 without restraints) Performing minimization step: 2871. Total energy = 6208.2622 kcal/mol (6203.1558 without restraints) Performing minimization step: 2872. Total energy = 6206.5031 kcal/mol (6201.3979 without restraints) Performing minimization step: 2873. Total energy = 6204.7457 kcal/mol (6199.6417 without restraints) Performing minimization step: 2874. Total energy = 6202.9900 kcal/mol (6197.8874 without restraints) Performing minimization step: 2875. Total energy = 6201.2360 kcal/mol (6196.1344 without restraints) Performing minimization step: 2876. Total energy = 6199.4838 kcal/mol (6194.3834 without restraints) Performing minimization step: 2877. Total energy = 6197.7329 kcal/mol (6192.6338 without restraints) Performing minimization step: 2878. Total energy = 6195.9839 kcal/mol (6190.8861 without restraints) Performing minimization step: 2879. Total energy = 6194.2369 kcal/mol (6189.1404 without restraints) Performing minimization step: 2880. Total energy = 6192.4914 kcal/mol (6187.3959 without restraints) Performing minimization step: 2881. Total energy = 6190.7475 kcal/mol (6185.6532 without restraints) Performing minimization step: 2882. Total energy = 6189.0058 kcal/mol (6183.9127 without restraints) Performing minimization step: 2883. Total energy = 6187.2650 kcal/mol (6182.1732 without restraints) Performing minimization step: 2884. Total energy = 6185.5261 kcal/mol (6180.4355 without restraints) Performing minimization step: 2885. Total energy = 6183.7889 kcal/mol (6178.6995 without restraints) Performing minimization step: 2886. Total energy = 6182.0532 kcal/mol (6176.9650 without restraints) Performing minimization step: 2887. Total energy = 6180.3194 kcal/mol (6175.2324 without restraints) Performing minimization step: 2888. Total energy = 6178.5870 kcal/mol (6173.5013 without restraints) Performing minimization step: 2889. Total energy = 6176.8567 kcal/mol (6171.7722 without restraints) Performing minimization step: 2890. Total energy = 6175.1280 kcal/mol (6170.0447 without restraints) Performing minimization step: 2891. Total energy = 6173.4012 kcal/mol (6168.3192 without restraints) Performing minimization step: 2892. Total energy = 6171.6760 kcal/mol (6166.5951 without restraints) Performing minimization step: 2893. Total energy = 6169.9523 kcal/mol (6164.8727 without restraints) Performing minimization step: 2894. Total energy = 6168.2301 kcal/mol (6163.1517 without restraints) Performing minimization step: 2895. Total energy = 6166.5096 kcal/mol (6161.4324 without restraints) Performing minimization step: 2896. Total energy = 6164.7908 kcal/mol (6159.7148 without restraints) Performing minimization step: 2897. Total energy = 6163.0737 kcal/mol (6157.9990 without restraints) Performing minimization step: 2898. Total energy = 6161.3585 kcal/mol (6156.2850 without restraints) Performing minimization step: 2899. Total energy = 6159.6447 kcal/mol (6154.5724 without restraints) Performing minimization step: 2900. Total energy = 6157.9326 kcal/mol (6152.8615 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 6156.2221 kcal/mol (6151.1523 without restraints) Performing minimization step: 2902. Total energy = 6154.5134 kcal/mol (6149.4448 without restraints) Performing minimization step: 2903. Total energy = 6152.8063 kcal/mol (6147.7389 without restraints) Performing minimization step: 2904. Total energy = 6151.1010 kcal/mol (6146.0348 without restraints) Performing minimization step: 2905. Total energy = 6149.3972 kcal/mol (6144.3322 without restraints) Performing minimization step: 2906. Total energy = 6147.6951 kcal/mol (6142.6314 without restraints) Performing minimization step: 2907. Total energy = 6145.9947 kcal/mol (6140.9320 without restraints) Performing minimization step: 2908. Total energy = 6144.2960 kcal/mol (6139.2345 without restraints) Performing minimization step: 2909. Total energy = 6142.5990 kcal/mol (6137.5390 without restraints) Performing minimization step: 2910. Total energy = 6140.9038 kcal/mol (6135.8449 without restraints) Performing minimization step: 2911. Total energy = 6139.2101 kcal/mol (6134.1525 without restraints) Performing minimization step: 2912. Total energy = 6137.5188 kcal/mol (6132.4623 without restraints) Performing minimization step: 2913. Total energy = 6135.8287 kcal/mol (6130.7734 without restraints) Performing minimization step: 2914. Total energy = 6134.1400 kcal/mol (6129.0860 without restraints) Performing minimization step: 2915. Total energy = 6132.4530 kcal/mol (6127.4002 without restraints) Performing minimization step: 2916. Total energy = 6130.7676 kcal/mol (6125.7161 without restraints) Performing minimization step: 2917. Total energy = 6129.0841 kcal/mol (6124.0338 without restraints) Performing minimization step: 2918. Total energy = 6127.4024 kcal/mol (6122.3533 without restraints) Performing minimization step: 2919. Total energy = 6125.7220 kcal/mol (6120.6741 without restraints) Performing minimization step: 2920. Total energy = 6124.0435 kcal/mol (6118.9968 without restraints) Performing minimization step: 2921. Total energy = 6122.3673 kcal/mol (6117.3220 without restraints) Performing minimization step: 2922. Total energy = 6120.6919 kcal/mol (6115.6477 without restraints) Performing minimization step: 2923. Total energy = 6119.0183 kcal/mol (6113.9753 without restraints) Performing minimization step: 2924. Total energy = 6117.3463 kcal/mol (6112.3045 without restraints) Performing minimization step: 2925. Total energy = 6115.6764 kcal/mol (6110.6359 without restraints) Performing minimization step: 2926. Total energy = 6114.0084 kcal/mol (6108.9691 without restraints) Performing minimization step: 2927. Total energy = 6112.3414 kcal/mol (6107.3033 without restraints) Performing minimization step: 2928. Total energy = 6110.6760 kcal/mol (6105.6392 without restraints) Performing minimization step: 2929. Total energy = 6109.0123 kcal/mol (6103.9767 without restraints) Performing minimization step: 2930. Total energy = 6107.3505 kcal/mol (6102.3161 without restraints) Performing minimization step: 2931. Total energy = 6105.6902 kcal/mol (6100.6570 without restraints) Performing minimization step: 2932. Total energy = 6104.0315 kcal/mol (6098.9995 without restraints) Performing minimization step: 2933. Total energy = 6102.3744 kcal/mol (6097.3437 without restraints) Performing minimization step: 2934. Total energy = 6100.7188 kcal/mol (6095.6892 without restraints) Performing minimization step: 2935. Total energy = 6099.0647 kcal/mol (6094.0364 without restraints) Performing minimization step: 2936. Total energy = 6097.4127 kcal/mol (6092.3857 without restraints) Performing minimization step: 2937. Total energy = 6095.7625 kcal/mol (6090.7367 without restraints) Performing minimization step: 2938. Total energy = 6094.1137 kcal/mol (6089.0891 without restraints) Performing minimization step: 2939. Total energy = 6092.4667 kcal/mol (6087.4433 without restraints) Performing minimization step: 2940. Total energy = 6090.8214 kcal/mol (6085.7992 without restraints) Performing minimization step: 2941. Total energy = 6089.1773 kcal/mol (6084.1564 without restraints) Performing minimization step: 2942. Total energy = 6087.5352 kcal/mol (6082.5156 without restraints) Performing minimization step: 2943. Total energy = 6085.8948 kcal/mol (6080.8763 without restraints) Performing minimization step: 2944. Total energy = 6084.2564 kcal/mol (6079.2393 without restraints) Performing minimization step: 2945. Total energy = 6082.6196 kcal/mol (6077.6037 without restraints) Performing minimization step: 2946. Total energy = 6080.9843 kcal/mol (6075.9695 without restraints) Performing minimization step: 2947. Total energy = 6079.3500 kcal/mol (6074.3364 without restraints) Performing minimization step: 2948. Total energy = 6077.7177 kcal/mol (6072.7053 without restraints) Performing minimization step: 2949. Total energy = 6076.0870 kcal/mol (6071.0758 without restraints) Performing minimization step: 2950. Total energy = 6074.4579 kcal/mol (6069.4480 without restraints) Performing minimization step: 2951. Total energy = 6072.8304 kcal/mol (6067.8216 without restraints) Performing minimization step: 2952. Total energy = 6071.2047 kcal/mol (6066.1974 without restraints) Performing minimization step: 2953. Total energy = 6069.5812 kcal/mol (6064.5749 without restraints) Performing minimization step: 2954. Total energy = 6067.9589 kcal/mol (6062.9539 without restraints) Performing minimization step: 2955. Total energy = 6066.3380 kcal/mol (6061.3342 without restraints) Performing minimization step: 2956. Total energy = 6064.7187 kcal/mol (6059.7161 without restraints) Performing minimization step: 2957. Total energy = 6063.1008 kcal/mol (6058.0995 without restraints) Performing minimization step: 2958. Total energy = 6061.4848 kcal/mol (6056.4847 without restraints) Performing minimization step: 2959. Total energy = 6059.8705 kcal/mol (6054.8716 without restraints) Performing minimization step: 2960. Total energy = 6058.2578 kcal/mol (6053.2601 without restraints) Performing minimization step: 2961. Total energy = 6056.6468 kcal/mol (6051.6503 without restraints) Performing minimization step: 2962. Total energy = 6055.0377 kcal/mol (6050.0424 without restraints) Performing minimization step: 2963. Total energy = 6053.4298 kcal/mol (6048.4358 without restraints) Performing minimization step: 2964. Total energy = 6051.8237 kcal/mol (6046.8309 without restraints) Performing minimization step: 2965. Total energy = 6050.2191 kcal/mol (6045.2277 without restraints) Performing minimization step: 2966. Total energy = 6048.6163 kcal/mol (6043.6259 without restraints) Performing minimization step: 2967. Total energy = 6047.0148 kcal/mol (6042.0257 without restraints) Performing minimization step: 2968. Total energy = 6045.4151 kcal/mol (6040.4274 without restraints) Performing minimization step: 2969. Total energy = 6043.8173 kcal/mol (6038.8306 without restraints) Performing minimization step: 2970. Total energy = 6042.2208 kcal/mol (6037.2353 without restraints) Performing minimization step: 2971. Total energy = 6040.6258 kcal/mol (6035.6416 without restraints) Performing minimization step: 2972. Total energy = 6039.0327 kcal/mol (6034.0497 without restraints) Performing minimization step: 2973. Total energy = 6037.4410 kcal/mol (6032.4592 without restraints) Performing minimization step: 2974. Total energy = 6035.8508 kcal/mol (6030.8703 without restraints) Performing minimization step: 2975. Total energy = 6034.2623 kcal/mol (6029.2830 without restraints) Performing minimization step: 2976. Total energy = 6032.6754 kcal/mol (6027.6973 without restraints) Performing minimization step: 2977. Total energy = 6031.0900 kcal/mol (6026.1132 without restraints) Performing minimization step: 2978. Total energy = 6029.5062 kcal/mol (6024.5304 without restraints) Performing minimization step: 2979. Total energy = 6027.9239 kcal/mol (6022.9495 without restraints) Performing minimization step: 2980. Total energy = 6026.3433 kcal/mol (6021.3701 without restraints) Performing minimization step: 2981. Total energy = 6024.7643 kcal/mol (6019.7923 without restraints) Performing minimization step: 2982. Total energy = 6023.1870 kcal/mol (6018.2163 without restraints) Performing minimization step: 2983. Total energy = 6021.6114 kcal/mol (6016.6419 without restraints) Performing minimization step: 2984. Total energy = 6020.0372 kcal/mol (6015.0689 without restraints) Performing minimization step: 2985. Total energy = 6018.4647 kcal/mol (6013.4976 without restraints) Performing minimization step: 2986. Total energy = 6016.8940 kcal/mol (6011.9282 without restraints) Performing minimization step: 2987. Total energy = 6015.3246 kcal/mol (6010.3600 without restraints) Performing minimization step: 2988. Total energy = 6013.7572 kcal/mol (6008.7938 without restraints) Performing minimization step: 2989. Total energy = 6012.1910 kcal/mol (6007.2290 without restraints) Performing minimization step: 2990. Total energy = 6010.6264 kcal/mol (6005.6655 without restraints) Performing minimization step: 2991. Total energy = 6009.0633 kcal/mol (6004.1036 without restraints) Performing minimization step: 2992. Total energy = 6007.5017 kcal/mol (6002.5432 without restraints) Performing minimization step: 2993. Total energy = 6005.9419 kcal/mol (6000.9847 without restraints) Performing minimization step: 2994. Total energy = 6004.3835 kcal/mol (5999.4274 without restraints) Performing minimization step: 2995. Total energy = 6002.8267 kcal/mol (5997.8719 without restraints) Performing minimization step: 2996. Total energy = 6001.2718 kcal/mol (5996.3183 without restraints) Performing minimization step: 2997. Total energy = 5999.7181 kcal/mol (5994.7658 without restraints) Performing minimization step: 2998. Total energy = 5998.1658 kcal/mol (5993.2146 without restraints) Performing minimization step: 2999. Total energy = 5996.6151 kcal/mol (5991.6652 without restraints) Performing minimization step: 3000. Total energy = 5995.0663 kcal/mol (5990.1176 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 5993.5188 kcal/mol (5988.5713 without restraints) Performing minimization step: 3002. Total energy = 5991.9728 kcal/mol (5987.0266 without restraints) Performing minimization step: 3003. Total energy = 5990.4284 kcal/mol (5985.4834 without restraints) Performing minimization step: 3004. Total energy = 5988.8854 kcal/mol (5983.9416 without restraints) Performing minimization step: 3005. Total energy = 5987.3443 kcal/mol (5982.4017 without restraints) Performing minimization step: 3006. Total energy = 5985.8045 kcal/mol (5980.8631 without restraints) Performing minimization step: 3007. Total energy = 5984.2662 kcal/mol (5979.3261 without restraints) Performing minimization step: 3008. Total energy = 5982.7295 kcal/mol (5977.7906 without restraints) Performing minimization step: 3009. Total energy = 5981.1941 kcal/mol (5976.2564 without restraints) Performing minimization step: 3010. Total energy = 5979.6611 kcal/mol (5974.7246 without restraints) Performing minimization step: 3011. Total energy = 5978.1292 kcal/mol (5973.1939 without restraints) Performing minimization step: 3012. Total energy = 5976.5987 kcal/mol (5971.6647 without restraints) Performing minimization step: 3013. Total energy = 5975.0696 kcal/mol (5970.1368 without restraints) Performing minimization step: 3014. Total energy = 5973.5425 kcal/mol (5968.6109 without restraints) Performing minimization step: 3015. Total energy = 5972.0165 kcal/mol (5967.0861 without restraints) Performing minimization step: 3016. Total energy = 5970.4920 kcal/mol (5965.5629 without restraints) Performing minimization step: 3017. Total energy = 5968.9689 kcal/mol (5964.0409 without restraints) Performing minimization step: 3018. Total energy = 5967.4474 kcal/mol (5962.5207 without restraints) Performing minimization step: 3019. Total energy = 5965.9280 kcal/mol (5961.0025 without restraints) Performing minimization step: 3020. Total energy = 5964.4096 kcal/mol (5959.4853 without restraints) Performing minimization step: 3021. Total energy = 5962.8928 kcal/mol (5957.9699 without restraints) Performing minimization step: 3022. Total energy = 5961.3777 kcal/mol (5956.4559 without restraints) Performing minimization step: 3023. Total energy = 5959.8639 kcal/mol (5954.9433 without restraints) Performing minimization step: 3024. Total energy = 5958.3516 kcal/mol (5953.4322 without restraints) Performing minimization step: 3025. Total energy = 5956.8407 kcal/mol (5951.9226 without restraints) Performing minimization step: 3026. Total energy = 5955.3312 kcal/mol (5950.4140 without restraints) Performing minimization step: 3027. Total energy = 5953.8231 kcal/mol (5948.9074 without restraints) Performing minimization step: 3028. Total energy = 5952.3168 kcal/mol (5947.4023 without restraints) Performing minimization step: 3029. Total energy = 5950.8121 kcal/mol (5945.8990 without restraints) Performing minimization step: 3030. Total energy = 5949.3084 kcal/mol (5944.3964 without restraints) Performing minimization step: 3031. Total energy = 5947.8065 kcal/mol (5942.8957 without restraints) Performing minimization step: 3032. Total energy = 5946.3062 kcal/mol (5941.3967 without restraints) Performing minimization step: 3033. Total energy = 5944.8071 kcal/mol (5939.8987 without restraints) Performing minimization step: 3034. Total energy = 5943.3099 kcal/mol (5938.4027 without restraints) Performing minimization step: 3035. Total energy = 5941.8139 kcal/mol (5936.9079 without restraints) Performing minimization step: 3036. Total energy = 5940.3195 kcal/mol (5935.4148 without restraints) Performing minimization step: 3037. Total energy = 5938.8264 kcal/mol (5933.9229 without restraints) Performing minimization step: 3038. Total energy = 5937.3346 kcal/mol (5932.4323 without restraints) Performing minimization step: 3039. Total energy = 5935.8448 kcal/mol (5930.9437 without restraints) Performing minimization step: 3040. Total energy = 5934.3563 kcal/mol (5929.4564 without restraints) Performing minimization step: 3041. Total energy = 5932.8691 kcal/mol (5927.9704 without restraints) Performing minimization step: 3042. Total energy = 5931.3834 kcal/mol (5926.4859 without restraints) Performing minimization step: 3043. Total energy = 5929.8991 kcal/mol (5925.0029 without restraints) Performing minimization step: 3044. Total energy = 5928.4162 kcal/mol (5923.5212 without restraints) Performing minimization step: 3045. Total energy = 5926.9346 kcal/mol (5922.0408 without restraints) Performing minimization step: 3046. Total energy = 5925.4547 kcal/mol (5920.5622 without restraints) Performing minimization step: 3047. Total energy = 5923.9760 kcal/mol (5919.0847 without restraints) Performing minimization step: 3048. Total energy = 5922.4990 kcal/mol (5917.6089 without restraints) Performing minimization step: 3049. Total energy = 5921.0234 kcal/mol (5916.1345 without restraints) Performing minimization step: 3050. Total energy = 5919.5492 kcal/mol (5914.6615 without restraints) Performing minimization step: 3051. Total energy = 5918.0766 kcal/mol (5913.1901 without restraints) Performing minimization step: 3052. Total energy = 5916.6058 kcal/mol (5911.7206 without restraints) Performing minimization step: 3053. Total energy = 5915.1359 kcal/mol (5910.2520 without restraints) Performing minimization step: 3054. Total energy = 5913.6676 kcal/mol (5908.7847 without restraints) Performing minimization step: 3055. Total energy = 5912.2006 kcal/mol (5907.3190 without restraints) Performing minimization step: 3056. Total energy = 5910.7350 kcal/mol (5905.8546 without restraints) Performing minimization step: 3057. Total energy = 5909.2709 kcal/mol (5904.3917 without restraints) Performing minimization step: 3058. Total energy = 5907.8081 kcal/mol (5902.9301 without restraints) Performing minimization step: 3059. Total energy = 5906.3463 kcal/mol (5901.4692 without restraints) Performing minimization step: 3060. Total energy = 5904.8861 kcal/mol (5900.0105 without restraints) Performing minimization step: 3061. Total energy = 5903.4276 kcal/mol (5898.5532 without restraints) Performing minimization step: 3062. Total energy = 5901.9704 kcal/mol (5897.0973 without restraints) Performing minimization step: 3063. Total energy = 5900.5147 kcal/mol (5895.6428 without restraints) Performing minimization step: 3064. Total energy = 5899.0606 kcal/mol (5894.1901 without restraints) Performing minimization step: 3065. Total energy = 5897.6079 kcal/mol (5892.7384 without restraints) Performing minimization step: 3066. Total energy = 5896.1563 kcal/mol (5891.2880 without restraints) Performing minimization step: 3067. Total energy = 5894.7068 kcal/mol (5889.8397 without restraints) Performing minimization step: 3068. Total energy = 5893.2580 kcal/mol (5888.3921 without restraints) Performing minimization step: 3069. Total energy = 5891.8106 kcal/mol (5886.9459 without restraints) Performing minimization step: 3070. Total energy = 5890.3647 kcal/mol (5885.5014 without restraints) Performing minimization step: 3071. Total energy = 5888.9202 kcal/mol (5884.0579 without restraints) Performing minimization step: 3072. Total energy = 5887.4767 kcal/mol (5882.6156 without restraints) Performing minimization step: 3073. Total energy = 5886.0345 kcal/mol (5881.1747 without restraints) Performing minimization step: 3074. Total energy = 5884.5942 kcal/mol (5879.7356 without restraints) Performing minimization step: 3075. Total energy = 5883.1551 kcal/mol (5878.2977 without restraints) Performing minimization step: 3076. Total energy = 5881.7173 kcal/mol (5876.8611 without restraints) Performing minimization step: 3077. Total energy = 5880.2811 kcal/mol (5875.4261 without restraints) Performing minimization step: 3078. Total energy = 5878.8461 kcal/mol (5873.9923 without restraints) Performing minimization step: 3079. Total energy = 5877.4125 kcal/mol (5872.5598 without restraints) Performing minimization step: 3080. Total energy = 5875.9800 kcal/mol (5871.1287 without restraints) Performing minimization step: 3081. Total energy = 5874.5490 kcal/mol (5869.6989 without restraints) Performing minimization step: 3082. Total energy = 5873.1194 kcal/mol (5868.2704 without restraints) Performing minimization step: 3083. Total energy = 5871.6911 kcal/mol (5866.8433 without restraints) Performing minimization step: 3084. Total energy = 5870.2642 kcal/mol (5865.4178 without restraints) Performing minimization step: 3085. Total energy = 5868.8387 kcal/mol (5863.9934 without restraints) Performing minimization step: 3086. Total energy = 5867.4148 kcal/mol (5862.5707 without restraints) Performing minimization step: 3087. Total energy = 5865.9920 kcal/mol (5861.1491 without restraints) Performing minimization step: 3088. Total energy = 5864.5706 kcal/mol (5859.7289 without restraints) Performing minimization step: 3089. Total energy = 5863.1505 kcal/mol (5858.3100 without restraints) Performing minimization step: 3090. Total energy = 5861.7322 kcal/mol (5856.8929 without restraints) Performing minimization step: 3091. Total energy = 5860.3144 kcal/mol (5855.4763 without restraints) Performing minimization step: 3092. Total energy = 5858.8983 kcal/mol (5854.0614 without restraints) Performing minimization step: 3093. Total energy = 5857.4832 kcal/mol (5852.6475 without restraints) Performing minimization step: 3094. Total energy = 5856.0697 kcal/mol (5851.2352 without restraints) Performing minimization step: 3095. Total energy = 5854.6573 kcal/mol (5849.8240 without restraints) Performing minimization step: 3096. Total energy = 5853.2462 kcal/mol (5848.4142 without restraints) Performing minimization step: 3097. Total energy = 5851.8364 kcal/mol (5847.0055 without restraints) Performing minimization step: 3098. Total energy = 5850.4279 kcal/mol (5845.5982 without restraints) Performing minimization step: 3099. Total energy = 5849.0208 kcal/mol (5844.1923 without restraints) Performing minimization step: 3100. Total energy = 5847.6144 kcal/mol (5842.7872 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 5846.2098 kcal/mol (5841.3837 without restraints) Performing minimization step: 3102. Total energy = 5844.8065 kcal/mol (5839.9816 without restraints) Performing minimization step: 3103. Total energy = 5843.4045 kcal/mol (5838.5808 without restraints) Performing minimization step: 3104. Total energy = 5842.0040 kcal/mol (5837.1815 without restraints) Performing minimization step: 3105. Total energy = 5840.6045 kcal/mol (5835.7833 without restraints) Performing minimization step: 3106. Total energy = 5839.2063 kcal/mol (5834.3862 without restraints) Performing minimization step: 3107. Total energy = 5837.8095 kcal/mol (5832.9906 without restraints) Performing minimization step: 3108. Total energy = 5836.4141 kcal/mol (5831.5964 without restraints) Performing minimization step: 3109. Total energy = 5835.0200 kcal/mol (5830.2035 without restraints) Performing minimization step: 3110. Total energy = 5833.6268 kcal/mol (5828.8115 without restraints) Performing minimization step: 3111. Total energy = 5832.2348 kcal/mol (5827.4207 without restraints) Performing minimization step: 3112. Total energy = 5830.8441 kcal/mol (5826.0312 without restraints) Performing minimization step: 3113. Total energy = 5829.4551 kcal/mol (5824.6434 without restraints) Performing minimization step: 3114. Total energy = 5828.0673 kcal/mol (5823.2567 without restraints) Performing minimization step: 3115. Total energy = 5826.6808 kcal/mol (5821.8715 without restraints) Performing minimization step: 3116. Total energy = 5825.2953 kcal/mol (5820.4872 without restraints) Performing minimization step: 3117. Total energy = 5823.9111 kcal/mol (5819.1042 without restraints) Performing minimization step: 3118. Total energy = 5822.5279 kcal/mol (5817.7222 without restraints) Performing minimization step: 3119. Total energy = 5821.1461 kcal/mol (5816.3416 without restraints) Performing minimization step: 3120. Total energy = 5819.7656 kcal/mol (5814.9623 without restraints) Performing minimization step: 3121. Total energy = 5818.3862 kcal/mol (5813.5840 without restraints) Performing minimization step: 3122. Total energy = 5817.0081 kcal/mol (5812.2071 without restraints) Performing minimization step: 3123. Total energy = 5815.6310 kcal/mol (5810.8313 without restraints) Performing minimization step: 3124. Total energy = 5814.2552 kcal/mol (5809.4566 without restraints) Performing minimization step: 3125. Total energy = 5812.8806 kcal/mol (5808.0831 without restraints) Performing minimization step: 3126. Total energy = 5811.5070 kcal/mol (5806.7107 without restraints) Performing minimization step: 3127. Total energy = 5810.1347 kcal/mol (5805.3397 without restraints) Performing minimization step: 3128. Total energy = 5808.7637 kcal/mol (5803.9699 without restraints) Performing minimization step: 3129. Total energy = 5807.3940 kcal/mol (5802.6013 without restraints) Performing minimization step: 3130. Total energy = 5806.0252 kcal/mol (5801.2337 without restraints) Performing minimization step: 3131. Total energy = 5804.6578 kcal/mol (5799.8676 without restraints) Performing minimization step: 3132. Total energy = 5803.2922 kcal/mol (5798.5031 without restraints) Performing minimization step: 3133. Total energy = 5801.9269 kcal/mol (5797.1388 without restraints) Performing minimization step: 3134. Total energy = 5800.5630 kcal/mol (5795.7764 without restraints) Performing minimization step: 3135. Total energy = 5799.2006 kcal/mol (5794.4151 without restraints) Performing minimization step: 3136. Total energy = 5797.8393 kcal/mol (5793.0551 without restraints) Performing minimization step: 3137. Total energy = 5796.4796 kcal/mol (5791.6963 without restraints) Performing minimization step: 3138. Total energy = 5795.1204 kcal/mol (5790.3384 without restraints) Performing minimization step: 3139. Total energy = 5793.7628 kcal/mol (5788.9821 without restraints) Performing minimization step: 3140. Total energy = 5792.4068 kcal/mol (5787.6272 without restraints) Performing minimization step: 3141. Total energy = 5791.0514 kcal/mol (5786.2729 without restraints) Performing minimization step: 3142. Total energy = 5789.6970 kcal/mol (5784.9198 without restraints) Performing minimization step: 3143. Total energy = 5788.3436 kcal/mol (5783.5675 without restraints) Performing minimization step: 3144. Total energy = 5786.9913 kcal/mol (5782.2165 without restraints) Performing minimization step: 3145. Total energy = 5785.6403 kcal/mol (5780.8667 without restraints) Performing minimization step: 3146. Total energy = 5784.2908 kcal/mol (5779.5184 without restraints) Performing minimization step: 3147. Total energy = 5782.9422 kcal/mol (5778.1708 without restraints) Performing minimization step: 3148. Total energy = 5781.5949 kcal/mol (5776.8248 without restraints) Performing minimization step: 3149. Total energy = 5780.2489 kcal/mol (5775.4800 without restraints) Performing minimization step: 3150. Total energy = 5778.9038 kcal/mol (5774.1360 without restraints) Performing minimization step: 3151. Total energy = 5777.5599 kcal/mol (5772.7933 without restraints) Performing minimization step: 3152. Total energy = 5776.2171 kcal/mol (5771.4518 without restraints) Performing minimization step: 3153. Total energy = 5774.8755 kcal/mol (5770.1113 without restraints) Performing minimization step: 3154. Total energy = 5773.5347 kcal/mol (5768.7717 without restraints) Performing minimization step: 3155. Total energy = 5772.1950 kcal/mol (5767.4331 without restraints) Performing minimization step: 3156. Total energy = 5770.8577 kcal/mol (5766.0970 without restraints) Performing minimization step: 3157. Total energy = 5769.5206 kcal/mol (5764.7610 without restraints) Performing minimization step: 3158. Total energy = 5768.1845 kcal/mol (5763.4262 without restraints) Performing minimization step: 3159. Total energy = 5766.8498 kcal/mol (5762.0927 without restraints) Performing minimization step: 3160. Total energy = 5765.5163 kcal/mol (5760.7603 without restraints) Performing minimization step: 3161. Total energy = 5764.1835 kcal/mol (5759.4287 without restraints) Performing minimization step: 3162. Total energy = 5762.8521 kcal/mol (5758.0985 without restraints) Performing minimization step: 3163. Total energy = 5761.5216 kcal/mol (5756.7691 without restraints) Performing minimization step: 3164. Total energy = 5760.1922 kcal/mol (5755.4409 without restraints) Performing minimization step: 3165. Total energy = 5758.8638 kcal/mol (5754.1137 without restraints) Performing minimization step: 3166. Total energy = 5757.5366 kcal/mol (5752.7877 without restraints) Performing minimization step: 3167. Total energy = 5756.2106 kcal/mol (5751.4628 without restraints) Performing minimization step: 3168. Total energy = 5754.8856 kcal/mol (5750.1390 without restraints) Performing minimization step: 3169. Total energy = 5753.5616 kcal/mol (5748.8162 without restraints) Performing minimization step: 3170. Total energy = 5752.2391 kcal/mol (5747.4949 without restraints) Performing minimization step: 3171. Total energy = 5750.9171 kcal/mol (5746.1741 without restraints) Performing minimization step: 3172. Total energy = 5749.5965 kcal/mol (5744.8546 without restraints) Performing minimization step: 3173. Total energy = 5748.2771 kcal/mol (5743.5364 without restraints) Performing minimization step: 3174. Total energy = 5746.9588 kcal/mol (5742.2193 without restraints) Performing minimization step: 3175. Total energy = 5745.6415 kcal/mol (5740.9031 without restraints) Performing minimization step: 3176. Total energy = 5744.3252 kcal/mol (5739.5880 without restraints) Performing minimization step: 3177. Total energy = 5743.0101 kcal/mol (5738.2743 without restraints) Performing minimization step: 3178. Total energy = 5741.6964 kcal/mol (5736.9616 without restraints) Performing minimization step: 3179. Total energy = 5740.3836 kcal/mol (5735.6499 without restraints) Performing minimization step: 3180. Total energy = 5739.0716 kcal/mol (5734.3391 without restraints) Performing minimization step: 3181. Total energy = 5737.7608 kcal/mol (5733.0295 without restraints) Performing minimization step: 3182. Total energy = 5736.4510 kcal/mol (5731.7208 without restraints) Performing minimization step: 3183. Total energy = 5735.1418 kcal/mol (5730.4128 without restraints) Performing minimization step: 3184. Total energy = 5733.8339 kcal/mol (5729.1061 without restraints) Performing minimization step: 3185. Total energy = 5732.5273 kcal/mol (5727.8007 without restraints) Performing minimization step: 3186. Total energy = 5731.2221 kcal/mol (5726.4965 without restraints) Performing minimization step: 3187. Total energy = 5729.9176 kcal/mol (5725.1932 without restraints) Performing minimization step: 3188. Total energy = 5728.6142 kcal/mol (5723.8911 without restraints) Performing minimization step: 3189. Total energy = 5727.3118 kcal/mol (5722.5898 without restraints) Performing minimization step: 3190. Total energy = 5726.0105 kcal/mol (5721.2896 without restraints) Performing minimization step: 3191. Total energy = 5724.7102 kcal/mol (5719.9905 without restraints) Performing minimization step: 3192. Total energy = 5723.4107 kcal/mol (5718.6922 without restraints) Performing minimization step: 3193. Total energy = 5722.1127 kcal/mol (5717.3954 without restraints) Performing minimization step: 3194. Total energy = 5720.8156 kcal/mol (5716.0994 without restraints) Performing minimization step: 3195. Total energy = 5719.5197 kcal/mol (5714.8047 without restraints) Performing minimization step: 3196. Total energy = 5718.2244 kcal/mol (5713.5106 without restraints) Performing minimization step: 3197. Total energy = 5716.9305 kcal/mol (5712.2178 without restraints) Performing minimization step: 3198. Total energy = 5715.6376 kcal/mol (5710.9261 without restraints) Performing minimization step: 3199. Total energy = 5714.3457 kcal/mol (5709.6354 without restraints) Performing minimization step: 3200. Total energy = 5713.0551 kcal/mol (5708.3459 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 5711.7656 kcal/mol (5707.0577 without restraints) Performing minimization step: 3202. Total energy = 5710.4771 kcal/mol (5705.7702 without restraints) Performing minimization step: 3203. Total energy = 5709.1894 kcal/mol (5704.4837 without restraints) Performing minimization step: 3204. Total energy = 5707.9027 kcal/mol (5703.1982 without restraints) Performing minimization step: 3205. Total energy = 5706.6174 kcal/mol (5701.9140 without restraints) Performing minimization step: 3206. Total energy = 5705.3329 kcal/mol (5700.6307 without restraints) Performing minimization step: 3207. Total energy = 5704.0503 kcal/mol (5699.3493 without restraints) Performing minimization step: 3208. Total energy = 5702.7681 kcal/mol (5698.0682 without restraints) Performing minimization step: 3209. Total energy = 5701.4869 kcal/mol (5696.7882 without restraints) Performing minimization step: 3210. Total energy = 5700.2065 kcal/mol (5695.5089 without restraints) Performing minimization step: 3211. Total energy = 5698.9272 kcal/mol (5694.2308 without restraints) Performing minimization step: 3212. Total energy = 5697.6489 kcal/mol (5692.9536 without restraints) Performing minimization step: 3213. Total energy = 5696.3716 kcal/mol (5691.6775 without restraints) Performing minimization step: 3214. Total energy = 5695.0955 kcal/mol (5690.4025 without restraints) Performing minimization step: 3215. Total energy = 5693.8205 kcal/mol (5689.1289 without restraints) Performing minimization step: 3216. Total energy = 5692.5465 kcal/mol (5687.8558 without restraints) Performing minimization step: 3217. Total energy = 5691.2733 kcal/mol (5686.5838 without restraints) Performing minimization step: 3218. Total energy = 5690.0016 kcal/mol (5685.3133 without restraints) Performing minimization step: 3219. Total energy = 5688.7302 kcal/mol (5684.0430 without restraints) Performing minimization step: 3220. Total energy = 5687.4602 kcal/mol (5682.7742 without restraints) Performing minimization step: 3221. Total energy = 5686.1913 kcal/mol (5681.5065 without restraints) Performing minimization step: 3222. Total energy = 5684.9233 kcal/mol (5680.2396 without restraints) Performing minimization step: 3223. Total energy = 5683.6568 kcal/mol (5678.9743 without restraints) Performing minimization step: 3224. Total energy = 5682.3910 kcal/mol (5677.7096 without restraints) Performing minimization step: 3225. Total energy = 5681.1263 kcal/mol (5676.4461 without restraints) Performing minimization step: 3226. Total energy = 5679.8624 kcal/mol (5675.1834 without restraints) Performing minimization step: 3227. Total energy = 5678.6002 kcal/mol (5673.9223 without restraints) Performing minimization step: 3228. Total energy = 5677.3384 kcal/mol (5672.6616 without restraints) Performing minimization step: 3229. Total energy = 5676.0776 kcal/mol (5671.4020 without restraints) Performing minimization step: 3230. Total energy = 5674.8182 kcal/mol (5670.1438 without restraints) Performing minimization step: 3231. Total energy = 5673.5598 kcal/mol (5668.8865 without restraints) Performing minimization step: 3232. Total energy = 5672.3019 kcal/mol (5667.6298 without restraints) Performing minimization step: 3233. Total energy = 5671.0457 kcal/mol (5666.3748 without restraints) Performing minimization step: 3234. Total energy = 5669.7905 kcal/mol (5665.1210 without restraints) Performing minimization step: 3235. Total energy = 5668.5363 kcal/mol (5663.8675 without restraints) Performing minimization step: 3236. Total energy = 5667.2827 kcal/mol (5662.6152 without restraints) Performing minimization step: 3237. Total energy = 5666.0302 kcal/mol (5661.3639 without restraints) Performing minimization step: 3238. Total energy = 5664.7788 kcal/mol (5660.1136 without restraints) Performing minimization step: 3239. Total energy = 5663.5286 kcal/mol (5658.8646 without restraints) Performing minimization step: 3240. Total energy = 5662.2797 kcal/mol (5657.6170 without restraints) Performing minimization step: 3241. Total energy = 5661.0314 kcal/mol (5656.3698 without restraints) Performing minimization step: 3242. Total energy = 5659.7843 kcal/mol (5655.1237 without restraints) Performing minimization step: 3243. Total energy = 5658.5381 kcal/mol (5653.8787 without restraints) Performing minimization step: 3244. Total energy = 5657.2934 kcal/mol (5652.6351 without restraints) Performing minimization step: 3245. Total energy = 5656.0493 kcal/mol (5651.3922 without restraints) Performing minimization step: 3246. Total energy = 5654.8062 kcal/mol (5650.1503 without restraints) Performing minimization step: 3247. Total energy = 5653.5642 kcal/mol (5648.9094 without restraints) Performing minimization step: 3248. Total energy = 5652.3233 kcal/mol (5647.6696 without restraints) Performing minimization step: 3249. Total energy = 5651.0835 kcal/mol (5646.4310 without restraints) Performing minimization step: 3250. Total energy = 5649.8449 kcal/mol (5645.1936 without restraints) Performing minimization step: 3251. Total energy = 5648.6073 kcal/mol (5643.9573 without restraints) Performing minimization step: 3252. Total energy = 5647.3705 kcal/mol (5642.7215 without restraints) Performing minimization step: 3253. Total energy = 5646.1348 kcal/mol (5641.4869 without restraints) Performing minimization step: 3254. Total energy = 5644.9000 kcal/mol (5640.2534 without restraints) Performing minimization step: 3255. Total energy = 5643.6665 kcal/mol (5639.0209 without restraints) Performing minimization step: 3256. Total energy = 5642.4340 kcal/mol (5637.7897 without restraints) Performing minimization step: 3257. Total energy = 5641.2026 kcal/mol (5636.5594 without restraints) Performing minimization step: 3258. Total energy = 5639.9718 kcal/mol (5635.3296 without restraints) Performing minimization step: 3259. Total energy = 5638.7424 kcal/mol (5634.1015 without restraints) Performing minimization step: 3260. Total energy = 5637.5143 kcal/mol (5632.8745 without restraints) Performing minimization step: 3261. Total energy = 5636.2870 kcal/mol (5631.6484 without restraints) Performing minimization step: 3262. Total energy = 5635.0611 kcal/mol (5630.4238 without restraints) Performing minimization step: 3263. Total energy = 5633.8363 kcal/mol (5629.2000 without restraints) Performing minimization step: 3264. Total energy = 5632.6125 kcal/mol (5627.9774 without restraints) Performing minimization step: 3265. Total energy = 5631.3899 kcal/mol (5626.7559 without restraints) Performing minimization step: 3266. Total energy = 5630.1682 kcal/mol (5625.5354 without restraints) Performing minimization step: 3267. Total energy = 5628.9474 kcal/mol (5624.3158 without restraints) Performing minimization step: 3268. Total energy = 5627.7278 kcal/mol (5623.0973 without restraints) Performing minimization step: 3269. Total energy = 5626.5093 kcal/mol (5621.8800 without restraints) Performing minimization step: 3270. Total energy = 5625.2922 kcal/mol (5620.6640 without restraints) Performing minimization step: 3271. Total energy = 5624.0758 kcal/mol (5619.4488 without restraints) Performing minimization step: 3272. Total energy = 5622.8604 kcal/mol (5618.2345 without restraints) Performing minimization step: 3273. Total energy = 5621.6466 kcal/mol (5617.0219 without restraints) Performing minimization step: 3274. Total energy = 5620.4334 kcal/mol (5615.8098 without restraints) Performing minimization step: 3275. Total energy = 5619.2211 kcal/mol (5614.5987 without restraints) Performing minimization step: 3276. Total energy = 5618.0103 kcal/mol (5613.3890 without restraints) Performing minimization step: 3277. Total energy = 5616.8004 kcal/mol (5612.1803 without restraints) Performing minimization step: 3278. Total energy = 5615.5916 kcal/mol (5610.9726 without restraints) Performing minimization step: 3279. Total energy = 5614.3839 kcal/mol (5609.7661 without restraints) Performing minimization step: 3280. Total energy = 5613.1773 kcal/mol (5608.5607 without restraints) Performing minimization step: 3281. Total energy = 5611.9722 kcal/mol (5607.3568 without restraints) Performing minimization step: 3282. Total energy = 5610.7678 kcal/mol (5606.1535 without restraints) Performing minimization step: 3283. Total energy = 5609.5645 kcal/mol (5604.9514 without restraints) Performing minimization step: 3284. Total energy = 5608.3621 kcal/mol (5603.7501 without restraints) Performing minimization step: 3285. Total energy = 5607.1610 kcal/mol (5602.5502 without restraints) Performing minimization step: 3286. Total energy = 5605.9613 kcal/mol (5601.3516 without restraints) Performing minimization step: 3287. Total energy = 5604.7627 kcal/mol (5600.1542 without restraints) Performing minimization step: 3288. Total energy = 5603.5650 kcal/mol (5598.9577 without restraints) Performing minimization step: 3289. Total energy = 5602.3685 kcal/mol (5597.7624 without restraints) Performing minimization step: 3290. Total energy = 5601.1731 kcal/mol (5596.5681 without restraints) Performing minimization step: 3291. Total energy = 5599.9789 kcal/mol (5595.3751 without restraints) Performing minimization step: 3292. Total energy = 5598.7856 kcal/mol (5594.1829 without restraints) Performing minimization step: 3293. Total energy = 5597.5935 kcal/mol (5592.9920 without restraints) Performing minimization step: 3294. Total energy = 5596.4026 kcal/mol (5591.8022 without restraints) Performing minimization step: 3295. Total energy = 5595.2130 kcal/mol (5590.6138 without restraints) Performing minimization step: 3296. Total energy = 5594.0244 kcal/mol (5589.4263 without restraints) Performing minimization step: 3297. Total energy = 5592.8368 kcal/mol (5588.2397 without restraints) Performing minimization step: 3298. Total energy = 5591.6502 kcal/mol (5587.0545 without restraints) Performing minimization step: 3299. Total energy = 5590.4653 kcal/mol (5585.8708 without restraints) Performing minimization step: 3300. Total energy = 5589.2814 kcal/mol (5584.6880 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 5588.0988 kcal/mol (5583.5066 without restraints) Performing minimization step: 3302. Total energy = 5586.9170 kcal/mol (5582.3259 without restraints) Performing minimization step: 3303. Total energy = 5585.7364 kcal/mol (5581.1463 without restraints) Performing minimization step: 3304. Total energy = 5584.5568 kcal/mol (5579.9680 without restraints) Performing minimization step: 3305. Total energy = 5583.3784 kcal/mol (5578.7908 without restraints) Performing minimization step: 3306. Total energy = 5582.2018 kcal/mol (5577.6155 without restraints) Performing minimization step: 3307. Total energy = 5581.0258 kcal/mol (5576.4406 without restraints) Performing minimization step: 3308. Total energy = 5579.8510 kcal/mol (5575.2669 without restraints) Performing minimization step: 3309. Total energy = 5578.6773 kcal/mol (5574.0943 without restraints) Performing minimization step: 3310. Total energy = 5577.5047 kcal/mol (5572.9229 without restraints) Performing minimization step: 3311. Total energy = 5576.3332 kcal/mol (5571.7526 without restraints) Performing minimization step: 3312. Total energy = 5575.1628 kcal/mol (5570.5833 without restraints) Performing minimization step: 3313. Total energy = 5573.9939 kcal/mol (5569.4155 without restraints) Performing minimization step: 3314. Total energy = 5572.8263 kcal/mol (5568.2491 without restraints) Performing minimization step: 3315. Total energy = 5571.6600 kcal/mol (5567.0841 without restraints) Performing minimization step: 3316. Total energy = 5570.4948 kcal/mol (5565.9200 without restraints) Performing minimization step: 3317. Total energy = 5569.3304 kcal/mol (5564.7568 without restraints) Performing minimization step: 3318. Total energy = 5568.1675 kcal/mol (5563.5950 without restraints) Performing minimization step: 3319. Total energy = 5567.0054 kcal/mol (5562.4341 without restraints) Performing minimization step: 3320. Total energy = 5565.8446 kcal/mol (5561.2745 without restraints) Performing minimization step: 3321. Total energy = 5564.6851 kcal/mol (5560.1162 without restraints) Performing minimization step: 3322. Total energy = 5563.5267 kcal/mol (5558.9589 without restraints) Performing minimization step: 3323. Total energy = 5562.3695 kcal/mol (5557.8028 without restraints) Performing minimization step: 3324. Total energy = 5561.2133 kcal/mol (5556.6479 without restraints) Performing minimization step: 3325. Total energy = 5560.0585 kcal/mol (5555.4943 without restraints) Performing minimization step: 3326. Total energy = 5558.9051 kcal/mol (5554.3419 without restraints) Performing minimization step: 3327. Total energy = 5557.7525 kcal/mol (5553.1905 without restraints) Performing minimization step: 3328. Total energy = 5556.6011 kcal/mol (5552.0402 without restraints) Performing minimization step: 3329. Total energy = 5555.4513 kcal/mol (5550.8916 without restraints) Performing minimization step: 3330. Total energy = 5554.3023 kcal/mol (5549.7438 without restraints) Performing minimization step: 3331. Total energy = 5553.1546 kcal/mol (5548.5972 without restraints) Performing minimization step: 3332. Total energy = 5552.0079 kcal/mol (5547.4519 without restraints) Performing minimization step: 3333. Total energy = 5550.8628 kcal/mol (5546.3079 without restraints) Performing minimization step: 3334. Total energy = 5549.7187 kcal/mol (5545.1647 without restraints) Performing minimization step: 3335. Total energy = 5548.5756 kcal/mol (5544.0230 without restraints) Performing minimization step: 3336. Total energy = 5547.4340 kcal/mol (5542.8826 without restraints) Performing minimization step: 3337. Total energy = 5546.2933 kcal/mol (5541.7430 without restraints) Performing minimization step: 3338. Total energy = 5545.1543 kcal/mol (5540.6051 without restraints) Performing minimization step: 3339. Total energy = 5544.0162 kcal/mol (5539.4682 without restraints) Performing minimization step: 3340. Total energy = 5542.8792 kcal/mol (5538.3324 without restraints) Performing minimization step: 3341. Total energy = 5541.7436 kcal/mol (5537.1981 without restraints) Performing minimization step: 3342. Total energy = 5540.6094 kcal/mol (5536.0651 without restraints) Performing minimization step: 3343. Total energy = 5539.4759 kcal/mol (5534.9326 without restraints) Performing minimization step: 3344. Total energy = 5538.3442 kcal/mol (5533.8021 without restraints) Performing minimization step: 3345. Total energy = 5537.2133 kcal/mol (5532.6723 without restraints) Performing minimization step: 3346. Total energy = 5536.0833 kcal/mol (5531.5435 without restraints) Performing minimization step: 3347. Total energy = 5534.9561 kcal/mol (5530.4175 without restraints) Performing minimization step: 3348. Total energy = 5533.8296 kcal/mol (5529.2922 without restraints) Performing minimization step: 3349. Total energy = 5532.7034 kcal/mol (5528.1671 without restraints) Performing minimization step: 3350. Total energy = 5531.5789 kcal/mol (5527.0438 without restraints) Performing minimization step: 3351. Total energy = 5530.4555 kcal/mol (5525.9215 without restraints) Performing minimization step: 3352. Total energy = 5529.3333 kcal/mol (5524.8005 without restraints) Performing minimization step: 3353. Total energy = 5528.2118 kcal/mol (5523.6802 without restraints) Performing minimization step: 3354. Total energy = 5527.0917 kcal/mol (5522.5612 without restraints) Performing minimization step: 3355. Total energy = 5525.9733 kcal/mol (5521.4441 without restraints) Performing minimization step: 3356. Total energy = 5524.8558 kcal/mol (5520.3277 without restraints) Performing minimization step: 3357. Total energy = 5523.7398 kcal/mol (5519.2129 without restraints) Performing minimization step: 3358. Total energy = 5522.6247 kcal/mol (5518.0989 without restraints) Performing minimization step: 3359. Total energy = 5521.5114 kcal/mol (5516.9868 without restraints) Performing minimization step: 3360. Total energy = 5520.3984 kcal/mol (5515.8750 without restraints) Performing minimization step: 3361. Total energy = 5519.2870 kcal/mol (5514.7648 without restraints) Performing minimization step: 3362. Total energy = 5518.1768 kcal/mol (5513.6557 without restraints) Performing minimization step: 3363. Total energy = 5517.0681 kcal/mol (5512.5482 without restraints) Performing minimization step: 3364. Total energy = 5515.9608 kcal/mol (5511.4422 without restraints) Performing minimization step: 3365. Total energy = 5514.8543 kcal/mol (5510.3368 without restraints) Performing minimization step: 3366. Total energy = 5513.7491 kcal/mol (5509.2328 without restraints) Performing minimization step: 3367. Total energy = 5512.6452 kcal/mol (5508.1299 without restraints) Performing minimization step: 3368. Total energy = 5511.5422 kcal/mol (5507.0282 without restraints) Performing minimization step: 3369. Total energy = 5510.4406 kcal/mol (5505.9279 without restraints) Performing minimization step: 3370. Total energy = 5509.3404 kcal/mol (5504.8288 without restraints) Performing minimization step: 3371. Total energy = 5508.2410 kcal/mol (5503.7304 without restraints) Performing minimization step: 3372. Total energy = 5507.1429 kcal/mol (5502.6336 without restraints) Performing minimization step: 3373. Total energy = 5506.0461 kcal/mol (5501.5379 without restraints) Performing minimization step: 3374. Total energy = 5504.9508 kcal/mol (5500.4438 without restraints) Performing minimization step: 3375. Total energy = 5503.8566 kcal/mol (5499.3508 without restraints) Performing minimization step: 3376. Total energy = 5502.7637 kcal/mol (5498.2590 without restraints) Performing minimization step: 3377. Total energy = 5501.6719 kcal/mol (5497.1684 without restraints) Performing minimization step: 3378. Total energy = 5500.5809 kcal/mol (5496.0786 without restraints) Performing minimization step: 3379. Total energy = 5499.4915 kcal/mol (5494.9903 without restraints) Performing minimization step: 3380. Total energy = 5498.4032 kcal/mol (5493.9032 without restraints) Performing minimization step: 3381. Total energy = 5497.3160 kcal/mol (5492.8171 without restraints) Performing minimization step: 3382. Total energy = 5496.2302 kcal/mol (5491.7326 without restraints) Performing minimization step: 3383. Total energy = 5495.1460 kcal/mol (5490.6496 without restraints) Performing minimization step: 3384. Total energy = 5494.0626 kcal/mol (5489.5673 without restraints) Performing minimization step: 3385. Total energy = 5492.9806 kcal/mol (5488.4866 without restraints) Performing minimization step: 3386. Total energy = 5491.8998 kcal/mol (5487.4069 without restraints) Performing minimization step: 3387. Total energy = 5490.8201 kcal/mol (5486.3284 without restraints) Performing minimization step: 3388. Total energy = 5489.7421 kcal/mol (5485.2514 without restraints) Performing minimization step: 3389. Total energy = 5488.6647 kcal/mol (5484.1753 without restraints) Performing minimization step: 3390. Total energy = 5487.5888 kcal/mol (5483.1005 without restraints) Performing minimization step: 3391. Total energy = 5486.5140 kcal/mol (5482.0269 without restraints) Performing minimization step: 3392. Total energy = 5485.4404 kcal/mol (5480.9546 without restraints) Performing minimization step: 3393. Total energy = 5484.3681 kcal/mol (5479.8833 without restraints) Performing minimization step: 3394. Total energy = 5483.2969 kcal/mol (5478.8134 without restraints) Performing minimization step: 3395. Total energy = 5482.2269 kcal/mol (5477.7445 without restraints) Performing minimization step: 3396. Total energy = 5481.1585 kcal/mol (5476.6774 without restraints) Performing minimization step: 3397. Total energy = 5480.0911 kcal/mol (5475.6108 without restraints) Performing minimization step: 3398. Total energy = 5479.0246 kcal/mol (5474.5457 without restraints) Performing minimization step: 3399. Total energy = 5477.9593 kcal/mol (5473.4816 without restraints) Performing minimization step: 3400. Total energy = 5476.8953 kcal/mol (5472.4187 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 5475.8322 kcal/mol (5471.3568 without restraints) Performing minimization step: 3402. Total energy = 5474.7708 kcal/mol (5470.2968 without restraints) Performing minimization step: 3403. Total energy = 5473.7112 kcal/mol (5469.2381 without restraints) Performing minimization step: 3404. Total energy = 5472.6519 kcal/mol (5468.1800 without restraints) Performing minimization step: 3405. Total energy = 5471.5940 kcal/mol (5467.1233 without restraints) Performing minimization step: 3406. Total energy = 5470.5371 kcal/mol (5466.0676 without restraints) Performing minimization step: 3407. Total energy = 5469.4815 kcal/mol (5465.0131 without restraints) Performing minimization step: 3408. Total energy = 5468.4270 kcal/mol (5463.9598 without restraints) Performing minimization step: 3409. Total energy = 5467.3733 kcal/mol (5462.9074 without restraints) Performing minimization step: 3410. Total energy = 5466.3213 kcal/mol (5461.8564 without restraints) Performing minimization step: 3411. Total energy = 5465.2703 kcal/mol (5460.8066 without restraints) Performing minimization step: 3412. Total energy = 5464.2202 kcal/mol (5459.7576 without restraints) Performing minimization step: 3413. Total energy = 5463.1721 kcal/mol (5458.7109 without restraints) Performing minimization step: 3414. Total energy = 5462.1248 kcal/mol (5457.6647 without restraints) Performing minimization step: 3415. Total energy = 5461.0789 kcal/mol (5456.6202 without restraints) Performing minimization step: 3416. Total energy = 5460.0346 kcal/mol (5455.5768 without restraints) Performing minimization step: 3417. Total energy = 5458.9908 kcal/mol (5454.5340 without restraints) Performing minimization step: 3418. Total energy = 5457.9479 kcal/mol (5453.4924 without restraints) Performing minimization step: 3419. Total energy = 5456.9064 kcal/mol (5452.4519 without restraints) Performing minimization step: 3420. Total energy = 5455.8660 kcal/mol (5451.4128 without restraints) Performing minimization step: 3421. Total energy = 5454.8267 kcal/mol (5450.3747 without restraints) Performing minimization step: 3422. Total energy = 5453.7887 kcal/mol (5449.3379 without restraints) Performing minimization step: 3423. Total energy = 5452.7522 kcal/mol (5448.3028 without restraints) Performing minimization step: 3424. Total energy = 5451.7168 kcal/mol (5447.2683 without restraints) Performing minimization step: 3425. Total energy = 5450.6828 kcal/mol (5446.2355 without restraints) Performing minimization step: 3426. Total energy = 5449.6495 kcal/mol (5445.2034 without restraints) Performing minimization step: 3427. Total energy = 5448.6176 kcal/mol (5444.1726 without restraints) Performing minimization step: 3428. Total energy = 5447.5861 kcal/mol (5443.1422 without restraints) Performing minimization step: 3429. Total energy = 5446.5563 kcal/mol (5442.1136 without restraints) Performing minimization step: 3430. Total energy = 5445.5279 kcal/mol (5441.0863 without restraints) Performing minimization step: 3431. Total energy = 5444.5004 kcal/mol (5440.0601 without restraints) Performing minimization step: 3432. Total energy = 5443.4741 kcal/mol (5439.0350 without restraints) Performing minimization step: 3433. Total energy = 5442.4490 kcal/mol (5438.0110 without restraints) Performing minimization step: 3434. Total energy = 5441.4250 kcal/mol (5436.9882 without restraints) Performing minimization step: 3435. Total energy = 5440.4023 kcal/mol (5435.9667 without restraints) Performing minimization step: 3436. Total energy = 5439.3807 kcal/mol (5434.9462 without restraints) Performing minimization step: 3437. Total energy = 5438.3605 kcal/mol (5433.9272 without restraints) Performing minimization step: 3438. Total energy = 5437.3413 kcal/mol (5432.9091 without restraints) Performing minimization step: 3439. Total energy = 5436.3231 kcal/mol (5431.8922 without restraints) Performing minimization step: 3440. Total energy = 5435.3065 kcal/mol (5430.8766 without restraints) Performing minimization step: 3441. Total energy = 5434.2906 kcal/mol (5429.8619 without restraints) Performing minimization step: 3442. Total energy = 5433.2757 kcal/mol (5428.8482 without restraints) Performing minimization step: 3443. Total energy = 5432.2622 kcal/mol (5427.8358 without restraints) Performing minimization step: 3444. Total energy = 5431.2496 kcal/mol (5426.8244 without restraints) Performing minimization step: 3445. Total energy = 5430.2379 kcal/mol (5425.8139 without restraints) Performing minimization step: 3446. Total energy = 5429.2276 kcal/mol (5424.8047 without restraints) Performing minimization step: 3447. Total energy = 5428.2186 kcal/mol (5423.7968 without restraints) Performing minimization step: 3448. Total energy = 5427.2103 kcal/mol (5422.7898 without restraints) Performing minimization step: 3449. Total energy = 5426.2035 kcal/mol (5421.7840 without restraints) Performing minimization step: 3450. Total energy = 5425.1973 kcal/mol (5420.7791 without restraints) Performing minimization step: 3451. Total energy = 5424.1930 kcal/mol (5419.7759 without restraints) Performing minimization step: 3452. Total energy = 5423.1894 kcal/mol (5418.7734 without restraints) Performing minimization step: 3453. Total energy = 5422.1869 kcal/mol (5417.7722 without restraints) Performing minimization step: 3454. Total energy = 5421.1854 kcal/mol (5416.7718 without restraints) Performing minimization step: 3455. Total energy = 5420.1850 kcal/mol (5415.7725 without restraints) Performing minimization step: 3456. Total energy = 5419.1856 kcal/mol (5414.7743 without restraints) Performing minimization step: 3457. Total energy = 5418.1872 kcal/mol (5413.7771 without restraints) Performing minimization step: 3458. Total energy = 5417.1904 kcal/mol (5412.7816 without restraints) Performing minimization step: 3459. Total energy = 5416.1949 kcal/mol (5411.7873 without restraints) Performing minimization step: 3460. Total energy = 5415.2005 kcal/mol (5410.7938 without restraints) Performing minimization step: 3461. Total energy = 5414.2069 kcal/mol (5409.8014 without restraints) Performing minimization step: 3462. Total energy = 5413.2148 kcal/mol (5408.8105 without restraints) Performing minimization step: 3463. Total energy = 5412.2236 kcal/mol (5407.8205 without restraints) Performing minimization step: 3464. Total energy = 5411.2336 kcal/mol (5406.8315 without restraints) Performing minimization step: 3465. Total energy = 5410.2441 kcal/mol (5405.8433 without restraints) Performing minimization step: 3466. Total energy = 5409.2563 kcal/mol (5404.8566 without restraints) Performing minimization step: 3467. Total energy = 5408.2693 kcal/mol (5403.8708 without restraints) Performing minimization step: 3468. Total energy = 5407.2836 kcal/mol (5402.8863 without restraints) Performing minimization step: 3469. Total energy = 5406.2989 kcal/mol (5401.9027 without restraints) Performing minimization step: 3470. Total energy = 5405.3151 kcal/mol (5400.9200 without restraints) Performing minimization step: 3471. Total energy = 5404.3326 kcal/mol (5399.9387 without restraints) Performing minimization step: 3472. Total energy = 5403.3512 kcal/mol (5398.9585 without restraints) Performing minimization step: 3473. Total energy = 5402.3708 kcal/mol (5397.9793 without restraints) Performing minimization step: 3474. Total energy = 5401.3913 kcal/mol (5397.0009 without restraints) Performing minimization step: 3475. Total energy = 5400.4128 kcal/mol (5396.0235 without restraints) Performing minimization step: 3476. Total energy = 5399.4354 kcal/mol (5395.0473 without restraints) Performing minimization step: 3477. Total energy = 5398.4598 kcal/mol (5394.0729 without restraints) Performing minimization step: 3478. Total energy = 5397.4849 kcal/mol (5393.0991 without restraints) Performing minimization step: 3479. Total energy = 5396.5111 kcal/mol (5392.1264 without restraints) Performing minimization step: 3480. Total energy = 5395.5379 kcal/mol (5391.1544 without restraints) Performing minimization step: 3481. Total energy = 5394.5654 kcal/mol (5390.1830 without restraints) Performing minimization step: 3482. Total energy = 5393.5946 kcal/mol (5389.2133 without restraints) Performing minimization step: 3483. Total energy = 5392.6246 kcal/mol (5388.2444 without restraints) Performing minimization step: 3484. Total energy = 5391.6551 kcal/mol (5387.2762 without restraints) Performing minimization step: 3485. Total energy = 5390.6874 kcal/mol (5386.3096 without restraints) Performing minimization step: 3486. Total energy = 5389.7204 kcal/mol (5385.3438 without restraints) Performing minimization step: 3487. Total energy = 5388.7544 kcal/mol (5384.3789 without restraints) Performing minimization step: 3488. Total energy = 5387.7896 kcal/mol (5383.4153 without restraints) Performing minimization step: 3489. Total energy = 5386.8258 kcal/mol (5382.4527 without restraints) Performing minimization step: 3490. Total energy = 5385.8634 kcal/mol (5381.4914 without restraints) Performing minimization step: 3491. Total energy = 5384.9017 kcal/mol (5380.5309 without restraints) Performing minimization step: 3492. Total energy = 5383.9411 kcal/mol (5379.5713 without restraints) Performing minimization step: 3493. Total energy = 5382.9815 kcal/mol (5378.6129 without restraints) Performing minimization step: 3494. Total energy = 5382.0232 kcal/mol (5377.6558 without restraints) Performing minimization step: 3495. Total energy = 5381.0658 kcal/mol (5376.6996 without restraints) Performing minimization step: 3496. Total energy = 5380.1099 kcal/mol (5375.7448 without restraints) Performing minimization step: 3497. Total energy = 5379.1545 kcal/mol (5374.7906 without restraints) Performing minimization step: 3498. Total energy = 5378.2002 kcal/mol (5373.8374 without restraints) Performing minimization step: 3499. Total energy = 5377.2467 kcal/mol (5372.8850 without restraints) Performing minimization step: 3500. Total energy = 5376.2944 kcal/mol (5371.9338 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 5375.3429 kcal/mol (5370.9835 without restraints) Performing minimization step: 3502. Total energy = 5374.3924 kcal/mol (5370.0342 without restraints) Performing minimization step: 3503. Total energy = 5373.4433 kcal/mol (5369.0862 without restraints) Performing minimization step: 3504. Total energy = 5372.4948 kcal/mol (5368.1389 without restraints) Performing minimization step: 3505. Total energy = 5371.5471 kcal/mol (5367.1923 without restraints) Performing minimization step: 3506. Total energy = 5370.6008 kcal/mol (5366.2472 without restraints) Performing minimization step: 3507. Total energy = 5369.6551 kcal/mol (5365.3026 without restraints) Performing minimization step: 3508. Total energy = 5368.7106 kcal/mol (5364.3593 without restraints) Performing minimization step: 3509. Total energy = 5367.7673 kcal/mol (5363.4171 without restraints) Performing minimization step: 3510. Total energy = 5366.8248 kcal/mol (5362.4757 without restraints) Performing minimization step: 3511. Total energy = 5365.8833 kcal/mol (5361.5354 without restraints) Performing minimization step: 3512. Total energy = 5364.9428 kcal/mol (5360.5960 without restraints) Performing minimization step: 3513. Total energy = 5364.0034 kcal/mol (5359.6578 without restraints) Performing minimization step: 3514. Total energy = 5363.0650 kcal/mol (5358.7205 without restraints) Performing minimization step: 3515. Total energy = 5362.1277 kcal/mol (5357.7843 without restraints) Performing minimization step: 3516. Total energy = 5361.1911 kcal/mol (5356.8488 without restraints) Performing minimization step: 3517. Total energy = 5360.2555 kcal/mol (5355.9144 without restraints) Performing minimization step: 3518. Total energy = 5359.3208 kcal/mol (5354.9809 without restraints) Performing minimization step: 3519. Total energy = 5358.3872 kcal/mol (5354.0484 without restraints) Performing minimization step: 3520. Total energy = 5357.4546 kcal/mol (5353.1169 without restraints) Performing minimization step: 3521. Total energy = 5356.5227 kcal/mol (5352.1863 without restraints) Performing minimization step: 3522. Total energy = 5355.5921 kcal/mol (5351.2566 without restraints) Performing minimization step: 3523. Total energy = 5354.6624 kcal/mol (5350.3283 without restraints) Performing minimization step: 3524. Total energy = 5353.7339 kcal/mol (5349.4007 without restraints) Performing minimization step: 3525. Total energy = 5352.8060 kcal/mol (5348.4740 without restraints) Performing minimization step: 3526. Total energy = 5351.8793 kcal/mol (5347.5484 without restraints) Performing minimization step: 3527. Total energy = 5350.9531 kcal/mol (5346.6233 without restraints) Performing minimization step: 3528. Total energy = 5350.0281 kcal/mol (5345.6995 without restraints) Performing minimization step: 3529. Total energy = 5349.1047 kcal/mol (5344.7773 without restraints) Performing minimization step: 3530. Total energy = 5348.1818 kcal/mol (5343.8556 without restraints) Performing minimization step: 3531. Total energy = 5347.2597 kcal/mol (5342.9345 without restraints) Performing minimization step: 3532. Total energy = 5346.3387 kcal/mol (5342.0147 without restraints) Performing minimization step: 3533. Total energy = 5345.4183 kcal/mol (5341.0954 without restraints) Performing minimization step: 3534. Total energy = 5344.4991 kcal/mol (5340.1774 without restraints) Performing minimization step: 3535. Total energy = 5343.5808 kcal/mol (5339.2602 without restraints) Performing minimization step: 3536. Total energy = 5342.6634 kcal/mol (5338.3438 without restraints) Performing minimization step: 3537. Total energy = 5341.7468 kcal/mol (5337.4284 without restraints) Performing minimization step: 3538. Total energy = 5340.8309 kcal/mol (5336.5136 without restraints) Performing minimization step: 3539. Total energy = 5339.9164 kcal/mol (5335.6005 without restraints) Performing minimization step: 3540. Total energy = 5339.0033 kcal/mol (5334.6883 without restraints) Performing minimization step: 3541. Total energy = 5338.0904 kcal/mol (5333.7765 without restraints) Performing minimization step: 3542. Total energy = 5337.1788 kcal/mol (5332.8660 without restraints) Performing minimization step: 3543. Total energy = 5336.2678 kcal/mol (5331.9562 without restraints) Performing minimization step: 3544. Total energy = 5335.3578 kcal/mol (5331.0473 without restraints) Performing minimization step: 3545. Total energy = 5334.4488 kcal/mol (5330.1396 without restraints) Performing minimization step: 3546. Total energy = 5333.5407 kcal/mol (5329.2325 without restraints) Performing minimization step: 3547. Total energy = 5332.6333 kcal/mol (5328.3262 without restraints) Performing minimization step: 3548. Total energy = 5331.7268 kcal/mol (5327.4208 without restraints) Performing minimization step: 3549. Total energy = 5330.8219 kcal/mol (5326.5173 without restraints) Performing minimization step: 3550. Total energy = 5329.9174 kcal/mol (5325.6137 without restraints) Performing minimization step: 3551. Total energy = 5329.0140 kcal/mol (5324.7114 without restraints) Performing minimization step: 3552. Total energy = 5328.1114 kcal/mol (5323.8099 without restraints) Performing minimization step: 3553. Total energy = 5327.2092 kcal/mol (5322.9085 without restraints) Performing minimization step: 3554. Total energy = 5326.3078 kcal/mol (5322.0086 without restraints) Performing minimization step: 3555. Total energy = 5325.4078 kcal/mol (5321.1097 without restraints) Performing minimization step: 3556. Total energy = 5324.5091 kcal/mol (5320.2121 without restraints) Performing minimization step: 3557. Total energy = 5323.6109 kcal/mol (5319.3150 without restraints) Performing minimization step: 3558. Total energy = 5322.7134 kcal/mol (5318.4186 without restraints) Performing minimization step: 3559. Total energy = 5321.8169 kcal/mol (5317.5233 without restraints) Performing minimization step: 3560. Total energy = 5320.9212 kcal/mol (5316.6288 without restraints) Performing minimization step: 3561. Total energy = 5320.0268 kcal/mol (5315.7354 without restraints) Performing minimization step: 3562. Total energy = 5319.1334 kcal/mol (5314.8431 without restraints) Performing minimization step: 3563. Total energy = 5318.2405 kcal/mol (5313.9513 without restraints) Performing minimization step: 3564. Total energy = 5317.3487 kcal/mol (5313.0606 without restraints) Performing minimization step: 3565. Total energy = 5316.4577 kcal/mol (5312.1708 without restraints) Performing minimization step: 3566. Total energy = 5315.5677 kcal/mol (5311.2819 without restraints) Performing minimization step: 3567. Total energy = 5314.6784 kcal/mol (5310.3937 without restraints) Performing minimization step: 3568. Total energy = 5313.7899 kcal/mol (5309.5063 without restraints) Performing minimization step: 3569. Total energy = 5312.9024 kcal/mol (5308.6200 without restraints) Performing minimization step: 3570. Total energy = 5312.0155 kcal/mol (5307.7342 without restraints) Performing minimization step: 3571. Total energy = 5311.1293 kcal/mol (5306.8491 without restraints) Performing minimization step: 3572. Total energy = 5310.2444 kcal/mol (5305.9654 without restraints) Performing minimization step: 3573. Total energy = 5309.3604 kcal/mol (5305.0824 without restraints) Performing minimization step: 3574. Total energy = 5308.4769 kcal/mol (5304.2001 without restraints) Performing minimization step: 3575. Total energy = 5307.5948 kcal/mol (5303.3192 without restraints) Performing minimization step: 3576. Total energy = 5306.7133 kcal/mol (5302.4387 without restraints) Performing minimization step: 3577. Total energy = 5305.8327 kcal/mol (5301.5591 without restraints) Performing minimization step: 3578. Total energy = 5304.9529 kcal/mol (5300.6806 without restraints) Performing minimization step: 3579. Total energy = 5304.0741 kcal/mol (5299.8029 without restraints) Performing minimization step: 3580. Total energy = 5303.1961 kcal/mol (5298.9259 without restraints) Performing minimization step: 3581. Total energy = 5302.3192 kcal/mol (5298.0502 without restraints) Performing minimization step: 3582. Total energy = 5301.4430 kcal/mol (5297.1751 without restraints) Performing minimization step: 3583. Total energy = 5300.5674 kcal/mol (5296.3005 without restraints) Performing minimization step: 3584. Total energy = 5299.6926 kcal/mol (5295.4268 without restraints) Performing minimization step: 3585. Total energy = 5298.8185 kcal/mol (5294.5538 without restraints) Performing minimization step: 3586. Total energy = 5297.9461 kcal/mol (5293.6826 without restraints) Performing minimization step: 3587. Total energy = 5297.0745 kcal/mol (5292.8121 without restraints) Performing minimization step: 3588. Total energy = 5296.2029 kcal/mol (5291.9416 without restraints) Performing minimization step: 3589. Total energy = 5295.3326 kcal/mol (5291.0724 without restraints) Performing minimization step: 3590. Total energy = 5294.4628 kcal/mol (5290.2038 without restraints) Performing minimization step: 3591. Total energy = 5293.5940 kcal/mol (5289.3360 without restraints) Performing minimization step: 3592. Total energy = 5292.7259 kcal/mol (5288.4691 without restraints) Performing minimization step: 3593. Total energy = 5291.8589 kcal/mol (5287.6031 without restraints) Performing minimization step: 3594. Total energy = 5290.9925 kcal/mol (5286.7378 without restraints) Performing minimization step: 3595. Total energy = 5290.1269 kcal/mol (5285.8734 without restraints) Performing minimization step: 3596. Total energy = 5289.2623 kcal/mol (5285.0098 without restraints) Performing minimization step: 3597. Total energy = 5288.3982 kcal/mol (5284.1469 without restraints) Performing minimization step: 3598. Total energy = 5287.5352 kcal/mol (5283.2849 without restraints) Performing minimization step: 3599. Total energy = 5286.6729 kcal/mol (5282.4238 without restraints) Performing minimization step: 3600. Total energy = 5285.8118 kcal/mol (5281.5638 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 5284.9514 kcal/mol (5280.7044 without restraints) Performing minimization step: 3602. Total energy = 5284.0916 kcal/mol (5279.8457 without restraints) Performing minimization step: 3603. Total energy = 5283.2327 kcal/mol (5278.9879 without restraints) Performing minimization step: 3604. Total energy = 5282.3746 kcal/mol (5278.1310 without restraints) Performing minimization step: 3605. Total energy = 5281.5174 kcal/mol (5277.2749 without restraints) Performing minimization step: 3606. Total energy = 5280.6610 kcal/mol (5276.4195 without restraints) Performing minimization step: 3607. Total energy = 5279.8053 kcal/mol (5275.5651 without restraints) Performing minimization step: 3608. Total energy = 5278.9506 kcal/mol (5274.7113 without restraints) Performing minimization step: 3609. Total energy = 5278.0967 kcal/mol (5273.8585 without restraints) Performing minimization step: 3610. Total energy = 5277.2434 kcal/mol (5273.0063 without restraints) Performing minimization step: 3611. Total energy = 5276.3909 kcal/mol (5272.1549 without restraints) Performing minimization step: 3612. Total energy = 5275.5393 kcal/mol (5271.3045 without restraints) Performing minimization step: 3613. Total energy = 5274.6886 kcal/mol (5270.4548 without restraints) Performing minimization step: 3614. Total energy = 5273.8388 kcal/mol (5269.6061 without restraints) Performing minimization step: 3615. Total energy = 5272.9898 kcal/mol (5268.7583 without restraints) Performing minimization step: 3616. Total energy = 5272.1417 kcal/mol (5267.9112 without restraints) Performing minimization step: 3617. Total energy = 5271.2941 kcal/mol (5267.0647 without restraints) Performing minimization step: 3618. Total energy = 5270.4471 kcal/mol (5266.2189 without restraints) Performing minimization step: 3619. Total energy = 5269.6011 kcal/mol (5265.3740 without restraints) Performing minimization step: 3620. Total energy = 5268.7557 kcal/mol (5264.5295 without restraints) Performing minimization step: 3621. Total energy = 5267.9109 kcal/mol (5263.6858 without restraints) Performing minimization step: 3622. Total energy = 5267.0670 kcal/mol (5262.8430 without restraints) Performing minimization step: 3623. Total energy = 5266.2242 kcal/mol (5262.0013 without restraints) Performing minimization step: 3624. Total energy = 5265.3818 kcal/mol (5261.1601 without restraints) Performing minimization step: 3625. Total energy = 5264.5406 kcal/mol (5260.3199 without restraints) Performing minimization step: 3626. Total energy = 5263.6999 kcal/mol (5259.4804 without restraints) Performing minimization step: 3627. Total energy = 5262.8601 kcal/mol (5258.6416 without restraints) Performing minimization step: 3628. Total energy = 5262.0209 kcal/mol (5257.8035 without restraints) Performing minimization step: 3629. Total energy = 5261.1828 kcal/mol (5256.9665 without restraints) Performing minimization step: 3630. Total energy = 5260.3456 kcal/mol (5256.1304 without restraints) Performing minimization step: 3631. Total energy = 5259.5090 kcal/mol (5255.2949 without restraints) Performing minimization step: 3632. Total energy = 5258.6738 kcal/mol (5254.4608 without restraints) Performing minimization step: 3633. Total energy = 5257.8382 kcal/mol (5253.6262 without restraints) Performing minimization step: 3634. Total energy = 5257.0037 kcal/mol (5252.7931 without restraints) Performing minimization step: 3635. Total energy = 5256.1703 kcal/mol (5251.9607 without restraints) Performing minimization step: 3636. Total energy = 5255.3379 kcal/mol (5251.1292 without restraints) Performing minimization step: 3637. Total energy = 5254.5056 kcal/mol (5250.2980 without restraints) Performing minimization step: 3638. Total energy = 5253.6742 kcal/mol (5249.4677 without restraints) Performing minimization step: 3639. Total energy = 5252.8435 kcal/mol (5248.6381 without restraints) Performing minimization step: 3640. Total energy = 5252.0141 kcal/mol (5247.8097 without restraints) Performing minimization step: 3641. Total energy = 5251.1850 kcal/mol (5246.9818 without restraints) Performing minimization step: 3642. Total energy = 5250.3570 kcal/mol (5246.1548 without restraints) Performing minimization step: 3643. Total energy = 5249.5294 kcal/mol (5245.3283 without restraints) Performing minimization step: 3644. Total energy = 5248.7027 kcal/mol (5244.5027 without restraints) Performing minimization step: 3645. Total energy = 5247.8766 kcal/mol (5243.6776 without restraints) Performing minimization step: 3646. Total energy = 5247.0512 kcal/mol (5242.8533 without restraints) Performing minimization step: 3647. Total energy = 5246.2263 kcal/mol (5242.0295 without restraints) Performing minimization step: 3648. Total energy = 5245.4025 kcal/mol (5241.2067 without restraints) Performing minimization step: 3649. Total energy = 5244.5796 kcal/mol (5240.3850 without restraints) Performing minimization step: 3650. Total energy = 5243.7575 kcal/mol (5239.5639 without restraints) Performing minimization step: 3651. Total energy = 5242.9358 kcal/mol (5238.7434 without restraints) Performing minimization step: 3652. Total energy = 5242.1156 kcal/mol (5237.9242 without restraints) Performing minimization step: 3653. Total energy = 5241.2951 kcal/mol (5237.1046 without restraints) Performing minimization step: 3654. Total energy = 5240.4755 kcal/mol (5236.2863 without restraints) Performing minimization step: 3655. Total energy = 5239.6569 kcal/mol (5235.4687 without restraints) Performing minimization step: 3656. Total energy = 5238.8390 kcal/mol (5234.6518 without restraints) Performing minimization step: 3657. Total energy = 5238.0217 kcal/mol (5233.8355 without restraints) Performing minimization step: 3658. Total energy = 5237.2051 kcal/mol (5233.0200 without restraints) Performing minimization step: 3659. Total energy = 5236.3896 kcal/mol (5232.2057 without restraints) Performing minimization step: 3660. Total energy = 5235.5749 kcal/mol (5231.3920 without restraints) Performing minimization step: 3661. Total energy = 5234.7602 kcal/mol (5230.5785 without restraints) Performing minimization step: 3662. Total energy = 5233.9468 kcal/mol (5229.7661 without restraints) Performing minimization step: 3663. Total energy = 5233.1340 kcal/mol (5228.9544 without restraints) Performing minimization step: 3664. Total energy = 5232.3218 kcal/mol (5228.1432 without restraints) Performing minimization step: 3665. Total energy = 5231.5110 kcal/mol (5227.3335 without restraints) Performing minimization step: 3666. Total energy = 5230.7004 kcal/mol (5226.5240 without restraints) Performing minimization step: 3667. Total energy = 5229.8905 kcal/mol (5225.7152 without restraints) Performing minimization step: 3668. Total energy = 5229.0814 kcal/mol (5224.9072 without restraints) Performing minimization step: 3669. Total energy = 5228.2730 kcal/mol (5224.0998 without restraints) Performing minimization step: 3670. Total energy = 5227.4655 kcal/mol (5223.2933 without restraints) Performing minimization step: 3671. Total energy = 5226.6592 kcal/mol (5222.4881 without restraints) Performing minimization step: 3672. Total energy = 5225.8530 kcal/mol (5221.6831 without restraints) Performing minimization step: 3673. Total energy = 5225.0476 kcal/mol (5220.8787 without restraints) Performing minimization step: 3674. Total energy = 5224.2425 kcal/mol (5220.0746 without restraints) Performing minimization step: 3675. Total energy = 5223.4384 kcal/mol (5219.2717 without restraints) Performing minimization step: 3676. Total energy = 5222.6353 kcal/mol (5218.4696 without restraints) Performing minimization step: 3677. Total energy = 5221.8329 kcal/mol (5217.6683 without restraints) Performing minimization step: 3678. Total energy = 5221.0314 kcal/mol (5216.8678 without restraints) Performing minimization step: 3679. Total energy = 5220.2311 kcal/mol (5216.0685 without restraints) Performing minimization step: 3680. Total energy = 5219.4303 kcal/mol (5215.2688 without restraints) Performing minimization step: 3681. Total energy = 5218.6304 kcal/mol (5214.4700 without restraints) Performing minimization step: 3682. Total energy = 5217.8318 kcal/mol (5213.6725 without restraints) Performing minimization step: 3683. Total energy = 5217.0338 kcal/mol (5212.8755 without restraints) Performing minimization step: 3684. Total energy = 5216.2360 kcal/mol (5212.0788 without restraints) Performing minimization step: 3685. Total energy = 5215.4391 kcal/mol (5211.2829 without restraints) Performing minimization step: 3686. Total energy = 5214.6429 kcal/mol (5210.4879 without restraints) Performing minimization step: 3687. Total energy = 5213.8470 kcal/mol (5209.6930 without restraints) Performing minimization step: 3688. Total energy = 5213.0523 kcal/mol (5208.8993 without restraints) Performing minimization step: 3689. Total energy = 5212.2579 kcal/mol (5208.1059 without restraints) Performing minimization step: 3690. Total energy = 5211.4646 kcal/mol (5207.3137 without restraints) Performing minimization step: 3691. Total energy = 5210.6720 kcal/mol (5206.5222 without restraints) Performing minimization step: 3692. Total energy = 5209.8796 kcal/mol (5205.7308 without restraints) Performing minimization step: 3693. Total energy = 5209.0889 kcal/mol (5204.9412 without restraints) Performing minimization step: 3694. Total energy = 5208.2984 kcal/mol (5204.1517 without restraints) Performing minimization step: 3695. Total energy = 5207.5087 kcal/mol (5203.3632 without restraints) Performing minimization step: 3696. Total energy = 5206.7196 kcal/mol (5202.5751 without restraints) Performing minimization step: 3697. Total energy = 5205.9309 kcal/mol (5201.7873 without restraints) Performing minimization step: 3698. Total energy = 5205.1429 kcal/mol (5201.0005 without restraints) Performing minimization step: 3699. Total energy = 5204.3557 kcal/mol (5200.2144 without restraints) Performing minimization step: 3700. Total energy = 5203.5691 kcal/mol (5199.4286 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 5202.7833 kcal/mol (5198.6440 without restraints) Performing minimization step: 3702. Total energy = 5201.9984 kcal/mol (5197.8602 without restraints) Performing minimization step: 3703. Total energy = 5201.2135 kcal/mol (5197.0763 without restraints) Performing minimization step: 3704. Total energy = 5200.4295 kcal/mol (5196.2933 without restraints) Performing minimization step: 3705. Total energy = 5199.6463 kcal/mol (5195.5112 without restraints) Performing minimization step: 3706. Total energy = 5198.8636 kcal/mol (5194.7295 without restraints) Performing minimization step: 3707. Total energy = 5198.0819 kcal/mol (5193.9489 without restraints) Performing minimization step: 3708. Total energy = 5197.3009 kcal/mol (5193.1690 without restraints) Performing minimization step: 3709. Total energy = 5196.5206 kcal/mol (5192.3897 without restraints) Performing minimization step: 3710. Total energy = 5195.7408 kcal/mol (5191.6109 without restraints) Performing minimization step: 3711. Total energy = 5194.9613 kcal/mol (5190.8324 without restraints) Performing minimization step: 3712. Total energy = 5194.1830 kcal/mol (5190.0554 without restraints) Performing minimization step: 3713. Total energy = 5193.4057 kcal/mol (5189.2790 without restraints) Performing minimization step: 3714. Total energy = 5192.6286 kcal/mol (5188.5029 without restraints) Performing minimization step: 3715. Total energy = 5191.8521 kcal/mol (5187.7273 without restraints) Performing minimization step: 3716. Total energy = 5191.0767 kcal/mol (5186.9530 without restraints) Performing minimization step: 3717. Total energy = 5190.3016 kcal/mol (5186.1790 without restraints) Performing minimization step: 3718. Total energy = 5189.5269 kcal/mol (5185.4054 without restraints) Performing minimization step: 3719. Total energy = 5188.7530 kcal/mol (5184.6326 without restraints) Performing minimization step: 3720. Total energy = 5187.9805 kcal/mol (5183.8610 without restraints) Performing minimization step: 3721. Total energy = 5187.2077 kcal/mol (5183.0892 without restraints) Performing minimization step: 3722. Total energy = 5186.4360 kcal/mol (5182.3187 without restraints) Performing minimization step: 3723. Total energy = 5185.6653 kcal/mol (5181.5491 without restraints) Performing minimization step: 3724. Total energy = 5184.8950 kcal/mol (5180.7797 without restraints) Performing minimization step: 3725. Total energy = 5184.1261 kcal/mol (5180.0119 without restraints) Performing minimization step: 3726. Total energy = 5183.3570 kcal/mol (5179.2439 without restraints) Performing minimization step: 3727. Total energy = 5182.5887 kcal/mol (5178.4768 without restraints) Performing minimization step: 3728. Total energy = 5181.8212 kcal/mol (5177.7101 without restraints) Performing minimization step: 3729. Total energy = 5181.0544 kcal/mol (5176.9444 without restraints) Performing minimization step: 3730. Total energy = 5180.2882 kcal/mol (5176.1792 without restraints) Performing minimization step: 3731. Total energy = 5179.5225 kcal/mol (5175.4145 without restraints) Performing minimization step: 3732. Total energy = 5178.7575 kcal/mol (5174.6505 without restraints) Performing minimization step: 3733. Total energy = 5177.9931 kcal/mol (5173.8871 without restraints) Performing minimization step: 3734. Total energy = 5177.2292 kcal/mol (5173.1242 without restraints) Performing minimization step: 3735. Total energy = 5176.4658 kcal/mol (5172.3618 without restraints) Performing minimization step: 3736. Total energy = 5175.7029 kcal/mol (5171.5999 without restraints) Performing minimization step: 3737. Total energy = 5174.9411 kcal/mol (5170.8392 without restraints) Performing minimization step: 3738. Total energy = 5174.1797 kcal/mol (5170.0789 without restraints) Performing minimization step: 3739. Total energy = 5173.4191 kcal/mol (5169.3193 without restraints) Performing minimization step: 3740. Total energy = 5172.6585 kcal/mol (5168.5597 without restraints) Performing minimization step: 3741. Total energy = 5171.8992 kcal/mol (5167.8014 without restraints) Performing minimization step: 3742. Total energy = 5171.1404 kcal/mol (5167.0437 without restraints) Performing minimization step: 3743. Total energy = 5170.3825 kcal/mol (5166.2868 without restraints) Performing minimization step: 3744. Total energy = 5169.6256 kcal/mol (5165.5309 without restraints) Performing minimization step: 3745. Total energy = 5168.8689 kcal/mol (5164.7751 without restraints) Performing minimization step: 3746. Total energy = 5168.1128 kcal/mol (5164.0202 without restraints) Performing minimization step: 3747. Total energy = 5167.3575 kcal/mol (5163.2659 without restraints) Performing minimization step: 3748. Total energy = 5166.6032 kcal/mol (5162.5127 without restraints) Performing minimization step: 3749. Total energy = 5165.8490 kcal/mol (5161.7595 without restraints) Performing minimization step: 3750. Total energy = 5165.0961 kcal/mol (5161.0075 without restraints) Performing minimization step: 3751. Total energy = 5164.3433 kcal/mol (5160.2558 without restraints) Performing minimization step: 3752. Total energy = 5163.5909 kcal/mol (5159.5045 without restraints) Performing minimization step: 3753. Total energy = 5162.8394 kcal/mol (5158.7540 without restraints) Performing minimization step: 3754. Total energy = 5162.0884 kcal/mol (5158.0040 without restraints) Performing minimization step: 3755. Total energy = 5161.3382 kcal/mol (5157.2548 without restraints) Performing minimization step: 3756. Total energy = 5160.5887 kcal/mol (5156.5063 without restraints) Performing minimization step: 3757. Total energy = 5159.8393 kcal/mol (5155.7579 without restraints) Performing minimization step: 3758. Total energy = 5159.0907 kcal/mol (5155.0104 without restraints) Performing minimization step: 3759. Total energy = 5158.3430 kcal/mol (5154.2637 without restraints) Performing minimization step: 3760. Total energy = 5157.5955 kcal/mol (5153.5172 without restraints) Performing minimization step: 3761. Total energy = 5156.8495 kcal/mol (5152.7722 without restraints) Performing minimization step: 3762. Total energy = 5156.1035 kcal/mol (5152.0272 without restraints) Performing minimization step: 3763. Total energy = 5155.3579 kcal/mol (5151.2826 without restraints) Performing minimization step: 3764. Total energy = 5154.6134 kcal/mol (5150.5391 without restraints) Performing minimization step: 3765. Total energy = 5153.8693 kcal/mol (5149.7961 without restraints) Performing minimization step: 3766. Total energy = 5153.1258 kcal/mol (5149.0536 without restraints) Performing minimization step: 3767. Total energy = 5152.3829 kcal/mol (5148.3117 without restraints) Performing minimization step: 3768. Total energy = 5151.6405 kcal/mol (5147.5702 without restraints) Performing minimization step: 3769. Total energy = 5150.8987 kcal/mol (5146.8297 without restraints) Performing minimization step: 3770. Total energy = 5150.1578 kcal/mol (5146.0896 without restraints) Performing minimization step: 3771. Total energy = 5149.4174 kcal/mol (5145.3503 without restraints) Performing minimization step: 3772. Total energy = 5148.6777 kcal/mol (5144.6115 without restraints) Performing minimization step: 3773. Total energy = 5147.9386 kcal/mol (5143.8734 without restraints) Performing minimization step: 3774. Total energy = 5147.2001 kcal/mol (5143.1360 without restraints) Performing minimization step: 3775. Total energy = 5146.4623 kcal/mol (5142.3991 without restraints) Performing minimization step: 3776. Total energy = 5145.7247 kcal/mol (5141.6626 without restraints) Performing minimization step: 3777. Total energy = 5144.9878 kcal/mol (5140.9267 without restraints) Performing minimization step: 3778. Total energy = 5144.2517 kcal/mol (5140.1916 without restraints) Performing minimization step: 3779. Total energy = 5143.5162 kcal/mol (5139.4571 without restraints) Performing minimization step: 3780. Total energy = 5142.7812 kcal/mol (5138.7230 without restraints) Performing minimization step: 3781. Total energy = 5142.0469 kcal/mol (5137.9898 without restraints) Performing minimization step: 3782. Total energy = 5141.3131 kcal/mol (5137.2570 without restraints) Performing minimization step: 3783. Total energy = 5140.5800 kcal/mol (5136.5250 without restraints) Performing minimization step: 3784. Total energy = 5139.8475 kcal/mol (5135.7934 without restraints) Performing minimization step: 3785. Total energy = 5139.1159 kcal/mol (5135.0628 without restraints) Performing minimization step: 3786. Total energy = 5138.3847 kcal/mol (5134.3326 without restraints) Performing minimization step: 3787. Total energy = 5137.6545 kcal/mol (5133.6036 without restraints) Performing minimization step: 3788. Total energy = 5136.9249 kcal/mol (5132.8749 without restraints) Performing minimization step: 3789. Total energy = 5136.1959 kcal/mol (5132.1469 without restraints) Performing minimization step: 3790. Total energy = 5135.4673 kcal/mol (5131.4193 without restraints) Performing minimization step: 3791. Total energy = 5134.7392 kcal/mol (5130.6922 without restraints) Performing minimization step: 3792. Total energy = 5134.0119 kcal/mol (5129.9658 without restraints) Performing minimization step: 3793. Total energy = 5133.2850 kcal/mol (5129.2399 without restraints) Performing minimization step: 3794. Total energy = 5132.5591 kcal/mol (5128.5152 without restraints) Performing minimization step: 3795. Total energy = 5131.8337 kcal/mol (5127.7906 without restraints) Performing minimization step: 3796. Total energy = 5131.1089 kcal/mol (5127.0670 without restraints) Performing minimization step: 3797. Total energy = 5130.3847 kcal/mol (5126.3436 without restraints) Performing minimization step: 3798. Total energy = 5129.6606 kcal/mol (5125.6206 without restraints) Performing minimization step: 3799. Total energy = 5128.9375 kcal/mol (5124.8985 without restraints) Performing minimization step: 3800. Total energy = 5128.2148 kcal/mol (5124.1767 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 5127.4926 kcal/mol (5123.4555 without restraints) Performing minimization step: 3802. Total energy = 5126.7710 kcal/mol (5122.7349 without restraints) Performing minimization step: 3803. Total energy = 5126.0499 kcal/mol (5122.0148 without restraints) Performing minimization step: 3804. Total energy = 5125.3294 kcal/mol (5121.2954 without restraints) Performing minimization step: 3805. Total energy = 5124.6096 kcal/mol (5120.5765 without restraints) Performing minimization step: 3806. Total energy = 5123.8903 kcal/mol (5119.8583 without restraints) Performing minimization step: 3807. Total energy = 5123.1717 kcal/mol (5119.1406 without restraints) Performing minimization step: 3808. Total energy = 5122.4538 kcal/mol (5118.4237 without restraints) Performing minimization step: 3809. Total energy = 5121.7364 kcal/mol (5117.7072 without restraints) Performing minimization step: 3810. Total energy = 5121.0195 kcal/mol (5116.9913 without restraints) Performing minimization step: 3811. Total energy = 5120.3031 kcal/mol (5116.2759 without restraints) Performing minimization step: 3812. Total energy = 5119.5873 kcal/mol (5115.5611 without restraints) Performing minimization step: 3813. Total energy = 5118.8721 kcal/mol (5114.8469 without restraints) Performing minimization step: 3814. Total energy = 5118.1579 kcal/mol (5114.1337 without restraints) Performing minimization step: 3815. Total energy = 5117.4440 kcal/mol (5113.4207 without restraints) Performing minimization step: 3816. Total energy = 5116.7306 kcal/mol (5112.7083 without restraints) Performing minimization step: 3817. Total energy = 5116.0175 kcal/mol (5111.9963 without restraints) Performing minimization step: 3818. Total energy = 5115.3055 kcal/mol (5111.2852 without restraints) Performing minimization step: 3819. Total energy = 5114.5942 kcal/mol (5110.5750 without restraints) Performing minimization step: 3820. Total energy = 5113.8832 kcal/mol (5109.8649 without restraints) Performing minimization step: 3821. Total energy = 5113.1727 kcal/mol (5109.1553 without restraints) Performing minimization step: 3822. Total energy = 5112.4627 kcal/mol (5108.4464 without restraints) Performing minimization step: 3823. Total energy = 5111.7537 kcal/mol (5107.7384 without restraints) Performing minimization step: 3824. Total energy = 5111.0451 kcal/mol (5107.0307 without restraints) Performing minimization step: 3825. Total energy = 5110.3373 kcal/mol (5106.3239 without restraints) Performing minimization step: 3826. Total energy = 5109.6295 kcal/mol (5105.6171 without restraints) Performing minimization step: 3827. Total energy = 5108.9224 kcal/mol (5104.9110 without restraints) Performing minimization step: 3828. Total energy = 5108.2162 kcal/mol (5104.2057 without restraints) Performing minimization step: 3829. Total energy = 5107.5105 kcal/mol (5103.5010 without restraints) Performing minimization step: 3830. Total energy = 5106.8054 kcal/mol (5102.7969 without restraints) Performing minimization step: 3831. Total energy = 5106.1005 kcal/mol (5102.0929 without restraints) Performing minimization step: 3832. Total energy = 5105.3972 kcal/mol (5101.3906 without restraints) Performing minimization step: 3833. Total energy = 5104.6935 kcal/mol (5100.6879 without restraints) Performing minimization step: 3834. Total energy = 5103.9906 kcal/mol (5099.9861 without restraints) Performing minimization step: 3835. Total energy = 5103.2881 kcal/mol (5099.2843 without restraints) Performing minimization step: 3836. Total energy = 5102.5862 kcal/mol (5098.5838 without restraints) Performing minimization step: 3837. Total energy = 5101.8853 kcal/mol (5097.8837 without restraints) Performing minimization step: 3838. Total energy = 5101.1848 kcal/mol (5097.1841 without restraints) Performing minimization step: 3839. Total energy = 5100.4847 kcal/mol (5096.4850 without restraints) Performing minimization step: 3840. Total energy = 5099.7853 kcal/mol (5095.7866 without restraints) Performing minimization step: 3841. Total energy = 5099.0864 kcal/mol (5095.0886 without restraints) Performing minimization step: 3842. Total energy = 5098.3884 kcal/mol (5094.3917 without restraints) Performing minimization step: 3843. Total energy = 5097.6904 kcal/mol (5093.6945 without restraints) Performing minimization step: 3844. Total energy = 5096.9934 kcal/mol (5092.9985 without restraints) Performing minimization step: 3845. Total energy = 5096.2969 kcal/mol (5092.3030 without restraints) Performing minimization step: 3846. Total energy = 5095.6007 kcal/mol (5091.6077 without restraints) Performing minimization step: 3847. Total energy = 5094.9058 kcal/mol (5090.9138 without restraints) Performing minimization step: 3848. Total energy = 5094.2108 kcal/mol (5090.2198 without restraints) Performing minimization step: 3849. Total energy = 5093.5158 kcal/mol (5089.5257 without restraints) Performing minimization step: 3850. Total energy = 5092.8217 kcal/mol (5088.8327 without restraints) Performing minimization step: 3851. Total energy = 5092.1283 kcal/mol (5088.1402 without restraints) Performing minimization step: 3852. Total energy = 5091.4349 kcal/mol (5087.4477 without restraints) Performing minimization step: 3853. Total energy = 5090.7425 kcal/mol (5086.7563 without restraints) Performing minimization step: 3854. Total energy = 5090.0506 kcal/mol (5086.0653 without restraints) Performing minimization step: 3855. Total energy = 5089.3593 kcal/mol (5085.3750 without restraints) Performing minimization step: 3856. Total energy = 5088.6686 kcal/mol (5084.6853 without restraints) Performing minimization step: 3857. Total energy = 5087.9789 kcal/mol (5083.9967 without restraints) Performing minimization step: 3858. Total energy = 5087.2898 kcal/mol (5083.3086 without restraints) Performing minimization step: 3859. Total energy = 5086.6010 kcal/mol (5082.6206 without restraints) Performing minimization step: 3860. Total energy = 5085.9125 kcal/mol (5081.9330 without restraints) Performing minimization step: 3861. Total energy = 5085.2249 kcal/mol (5081.2464 without restraints) Performing minimization step: 3862. Total energy = 5084.5375 kcal/mol (5080.5600 without restraints) Performing minimization step: 3863. Total energy = 5083.8508 kcal/mol (5079.8743 without restraints) Performing minimization step: 3864. Total energy = 5083.1650 kcal/mol (5079.1896 without restraints) Performing minimization step: 3865. Total energy = 5082.4795 kcal/mol (5078.5048 without restraints) Performing minimization step: 3866. Total energy = 5081.7944 kcal/mol (5077.8209 without restraints) Performing minimization step: 3867. Total energy = 5081.1099 kcal/mol (5077.1372 without restraints) Performing minimization step: 3868. Total energy = 5080.4258 kcal/mol (5076.4540 without restraints) Performing minimization step: 3869. Total energy = 5079.7422 kcal/mol (5075.7714 without restraints) Performing minimization step: 3870. Total energy = 5079.0587 kcal/mol (5075.0888 without restraints) Performing minimization step: 3871. Total energy = 5078.3767 kcal/mol (5074.4080 without restraints) Performing minimization step: 3872. Total energy = 5077.6948 kcal/mol (5073.7268 without restraints) Performing minimization step: 3873. Total energy = 5077.0136 kcal/mol (5073.0466 without restraints) Performing minimization step: 3874. Total energy = 5076.3330 kcal/mol (5072.3671 without restraints) Performing minimization step: 3875. Total energy = 5075.6533 kcal/mol (5071.6882 without restraints) Performing minimization step: 3876. Total energy = 5074.9736 kcal/mol (5071.0096 without restraints) Performing minimization step: 3877. Total energy = 5074.2946 kcal/mol (5070.3314 without restraints) Performing minimization step: 3878. Total energy = 5073.6162 kcal/mol (5069.6539 without restraints) Performing minimization step: 3879. Total energy = 5072.9382 kcal/mol (5068.9767 without restraints) Performing minimization step: 3880. Total energy = 5072.2604 kcal/mol (5068.3000 without restraints) Performing minimization step: 3881. Total energy = 5071.5835 kcal/mol (5067.6241 without restraints) Performing minimization step: 3882. Total energy = 5070.9072 kcal/mol (5066.9487 without restraints) Performing minimization step: 3883. Total energy = 5070.2312 kcal/mol (5066.2737 without restraints) Performing minimization step: 3884. Total energy = 5069.5555 kcal/mol (5065.5989 without restraints) Performing minimization step: 3885. Total energy = 5068.8804 kcal/mol (5064.9247 without restraints) Performing minimization step: 3886. Total energy = 5068.2061 kcal/mol (5064.2514 without restraints) Performing minimization step: 3887. Total energy = 5067.5321 kcal/mol (5063.5783 without restraints) Performing minimization step: 3888. Total energy = 5066.8594 kcal/mol (5062.9066 without restraints) Performing minimization step: 3889. Total energy = 5066.1871 kcal/mol (5062.2355 without restraints) Performing minimization step: 3890. Total energy = 5065.5154 kcal/mol (5061.5646 without restraints) Performing minimization step: 3891. Total energy = 5064.8436 kcal/mol (5060.8936 without restraints) Performing minimization step: 3892. Total energy = 5064.1722 kcal/mol (5060.2232 without restraints) Performing minimization step: 3893. Total energy = 5063.5016 kcal/mol (5059.5535 without restraints) Performing minimization step: 3894. Total energy = 5062.8316 kcal/mol (5058.8845 without restraints) Performing minimization step: 3895. Total energy = 5062.1621 kcal/mol (5058.2159 without restraints) Performing minimization step: 3896. Total energy = 5061.4932 kcal/mol (5057.5480 without restraints) Performing minimization step: 3897. Total energy = 5060.8249 kcal/mol (5056.8806 without restraints) Performing minimization step: 3898. Total energy = 5060.1568 kcal/mol (5056.2135 without restraints) Performing minimization step: 3899. Total energy = 5059.4893 kcal/mol (5055.5469 without restraints) Performing minimization step: 3900. Total energy = 5058.8223 kcal/mol (5054.8808 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 5058.1559 kcal/mol (5054.2153 without restraints) Performing minimization step: 3902. Total energy = 5057.4899 kcal/mol (5053.5503 without restraints) Performing minimization step: 3903. Total energy = 5056.8245 kcal/mol (5052.8858 without restraints) Performing minimization step: 3904. Total energy = 5056.1599 kcal/mol (5052.2223 without restraints) Performing minimization step: 3905. Total energy = 5055.4957 kcal/mol (5051.5589 without restraints) Performing minimization step: 3906. Total energy = 5054.8320 kcal/mol (5050.8962 without restraints) Performing minimization step: 3907. Total energy = 5054.1694 kcal/mol (5050.2344 without restraints) Performing minimization step: 3908. Total energy = 5053.5065 kcal/mol (5049.5726 without restraints) Performing minimization step: 3909. Total energy = 5052.8439 kcal/mol (5048.9108 without restraints) Performing minimization step: 3910. Total energy = 5052.1825 kcal/mol (5048.2503 without restraints) Performing minimization step: 3911. Total energy = 5051.5216 kcal/mol (5047.5904 without restraints) Performing minimization step: 3912. Total energy = 5050.8613 kcal/mol (5046.9311 without restraints) Performing minimization step: 3913. Total energy = 5050.2010 kcal/mol (5046.2716 without restraints) Performing minimization step: 3914. Total energy = 5049.5414 kcal/mol (5045.6130 without restraints) Performing minimization step: 3915. Total energy = 5048.8829 kcal/mol (5044.9555 without restraints) Performing minimization step: 3916. Total energy = 5048.2244 kcal/mol (5044.2980 without restraints) Performing minimization step: 3917. Total energy = 5047.5664 kcal/mol (5043.6407 without restraints) Performing minimization step: 3918. Total energy = 5046.9085 kcal/mol (5042.9838 without restraints) Performing minimization step: 3919. Total energy = 5046.2518 kcal/mol (5042.3280 without restraints) Performing minimization step: 3920. Total energy = 5045.5956 kcal/mol (5041.6728 without restraints) Performing minimization step: 3921. Total energy = 5044.9399 kcal/mol (5041.0181 without restraints) Performing minimization step: 3922. Total energy = 5044.2845 kcal/mol (5040.3635 without restraints) Performing minimization step: 3923. Total energy = 5043.6296 kcal/mol (5039.7095 without restraints) Performing minimization step: 3924. Total energy = 5042.9753 kcal/mol (5039.0561 without restraints) Performing minimization step: 3925. Total energy = 5042.3214 kcal/mol (5038.4032 without restraints) Performing minimization step: 3926. Total energy = 5041.6676 kcal/mol (5037.7503 without restraints) Performing minimization step: 3927. Total energy = 5041.0146 kcal/mol (5037.0982 without restraints) Performing minimization step: 3928. Total energy = 5040.3623 kcal/mol (5036.4469 without restraints) Performing minimization step: 3929. Total energy = 5039.7105 kcal/mol (5035.7960 without restraints) Performing minimization step: 3930. Total energy = 5039.0588 kcal/mol (5035.1451 without restraints) Performing minimization step: 3931. Total energy = 5038.4082 kcal/mol (5034.4956 without restraints) Performing minimization step: 3932. Total energy = 5037.7581 kcal/mol (5033.8463 without restraints) Performing minimization step: 3933. Total energy = 5037.1082 kcal/mol (5033.1973 without restraints) Performing minimization step: 3934. Total energy = 5036.4588 kcal/mol (5032.5488 without restraints) Performing minimization step: 3935. Total energy = 5035.8099 kcal/mol (5031.9009 without restraints) Performing minimization step: 3936. Total energy = 5035.1614 kcal/mol (5031.2533 without restraints) Performing minimization step: 3937. Total energy = 5034.5133 kcal/mol (5030.6061 without restraints) Performing minimization step: 3938. Total energy = 5033.8659 kcal/mol (5029.9596 without restraints) Performing minimization step: 3939. Total energy = 5033.2190 kcal/mol (5029.3136 without restraints) Performing minimization step: 3940. Total energy = 5032.5726 kcal/mol (5028.6681 without restraints) Performing minimization step: 3941. Total energy = 5031.9267 kcal/mol (5028.0230 without restraints) Performing minimization step: 3942. Total energy = 5031.2811 kcal/mol (5027.3785 without restraints) Performing minimization step: 3943. Total energy = 5030.6362 kcal/mol (5026.7345 without restraints) Performing minimization step: 3944. Total energy = 5029.9919 kcal/mol (5026.0911 without restraints) Performing minimization step: 3945. Total energy = 5029.3482 kcal/mol (5025.4483 without restraints) Performing minimization step: 3946. Total energy = 5028.7050 kcal/mol (5024.8060 without restraints) Performing minimization step: 3947. Total energy = 5028.0624 kcal/mol (5024.1643 without restraints) Performing minimization step: 3948. Total energy = 5027.4205 kcal/mol (5023.5233 without restraints) Performing minimization step: 3949. Total energy = 5026.7783 kcal/mol (5022.8820 without restraints) Performing minimization step: 3950. Total energy = 5026.1373 kcal/mol (5022.2421 without restraints) Performing minimization step: 3951. Total energy = 5025.4969 kcal/mol (5021.6028 without restraints) Performing minimization step: 3952. Total energy = 5024.8568 kcal/mol (5020.9632 without restraints) Performing minimization step: 3953. Total energy = 5024.2172 kcal/mol (5020.3245 without restraints) Performing minimization step: 3954. Total energy = 5023.5778 kcal/mol (5019.6862 without restraints) Performing minimization step: 3955. Total energy = 5022.9388 kcal/mol (5019.0480 without restraints) Performing minimization step: 3956. Total energy = 5022.3010 kcal/mol (5018.4110 without restraints) Performing minimization step: 3957. Total energy = 5021.6627 kcal/mol (5017.7737 without restraints) Performing minimization step: 3958. Total energy = 5021.0252 kcal/mol (5017.1371 without restraints) Performing minimization step: 3959. Total energy = 5020.3886 kcal/mol (5016.5014 without restraints) Performing minimization step: 3960. Total energy = 5019.7523 kcal/mol (5015.8660 without restraints) Performing minimization step: 3961. Total energy = 5019.1165 kcal/mol (5015.2313 without restraints) Performing minimization step: 3962. Total energy = 5018.4813 kcal/mol (5014.5968 without restraints) Performing minimization step: 3963. Total energy = 5017.8466 kcal/mol (5013.9630 without restraints) Performing minimization step: 3964. Total energy = 5017.2120 kcal/mol (5013.3293 without restraints) Performing minimization step: 3965. Total energy = 5016.5780 kcal/mol (5012.6962 without restraints) Performing minimization step: 3966. Total energy = 5015.9444 kcal/mol (5012.0636 without restraints) Performing minimization step: 3967. Total energy = 5015.3113 kcal/mol (5011.4314 without restraints) Performing minimization step: 3968. Total energy = 5014.6789 kcal/mol (5010.7999 without restraints) Performing minimization step: 3969. Total energy = 5014.0468 kcal/mol (5010.1686 without restraints) Performing minimization step: 3970. Total energy = 5013.4155 kcal/mol (5009.5383 without restraints) Performing minimization step: 3971. Total energy = 5012.7845 kcal/mol (5008.9081 without restraints) Performing minimization step: 3972. Total energy = 5012.1538 kcal/mol (5008.2783 without restraints) Performing minimization step: 3973. Total energy = 5011.5236 kcal/mol (5007.6490 without restraints) Performing minimization step: 3974. Total energy = 5010.8942 kcal/mol (5007.0206 without restraints) Performing minimization step: 3975. Total energy = 5010.2651 kcal/mol (5006.3924 without restraints) Performing minimization step: 3976. Total energy = 5009.6365 kcal/mol (5005.7647 without restraints) Performing minimization step: 3977. Total energy = 5009.0089 kcal/mol (5005.1379 without restraints) Performing minimization step: 3978. Total energy = 5008.3814 kcal/mol (5004.5114 without restraints) Performing minimization step: 3979. Total energy = 5007.7542 kcal/mol (5003.8851 without restraints) Performing minimization step: 3980. Total energy = 5007.1276 kcal/mol (5003.2593 without restraints) Performing minimization step: 3981. Total energy = 5006.5012 kcal/mol (5002.6338 without restraints) Performing minimization step: 3982. Total energy = 5005.8754 kcal/mol (5002.0090 without restraints) Performing minimization step: 3983. Total energy = 5005.2502 kcal/mol (5001.3846 without restraints) Performing minimization step: 3984. Total energy = 5004.6253 kcal/mol (5000.7606 without restraints) Performing minimization step: 3985. Total energy = 5004.0009 kcal/mol (5000.1371 without restraints) Performing minimization step: 3986. Total energy = 5003.3770 kcal/mol (4999.5140 without restraints) Performing minimization step: 3987. Total energy = 5002.7538 kcal/mol (4998.8917 without restraints) Performing minimization step: 3988. Total energy = 5002.1310 kcal/mol (4998.2698 without restraints) Performing minimization step: 3989. Total energy = 5001.5087 kcal/mol (4997.6484 without restraints) Performing minimization step: 3990. Total energy = 5000.8871 kcal/mol (4997.0276 without restraints) Performing minimization step: 3991. Total energy = 5000.2659 kcal/mol (4996.4074 without restraints) Performing minimization step: 3992. Total energy = 4999.6452 kcal/mol (4995.7876 without restraints) Performing minimization step: 3993. Total energy = 4999.0247 kcal/mol (4995.1679 without restraints) Performing minimization step: 3994. Total energy = 4998.4046 kcal/mol (4994.5487 without restraints) Performing minimization step: 3995. Total energy = 4997.7850 kcal/mol (4993.9300 without restraints) Performing minimization step: 3996. Total energy = 4997.1658 kcal/mol (4993.3117 without restraints) Performing minimization step: 3997. Total energy = 4996.5470 kcal/mol (4992.6937 without restraints) Performing minimization step: 3998. Total energy = 4995.9287 kcal/mol (4992.0765 without restraints) Performing minimization step: 3999. Total energy = 4995.3114 kcal/mol (4991.4599 without restraints) Performing minimization step: 4000. Total energy = 4994.6945 kcal/mol (4990.8439 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 4994.0781 kcal/mol (4990.2285 without restraints) Performing minimization step: 4002. Total energy = 4993.4618 kcal/mol (4989.6130 without restraints) Performing minimization step: 4003. Total energy = 4992.8458 kcal/mol (4988.9979 without restraints) Performing minimization step: 4004. Total energy = 4992.2304 kcal/mol (4988.3834 without restraints) Performing minimization step: 4005. Total energy = 4991.6155 kcal/mol (4987.7693 without restraints) Performing minimization step: 4006. Total energy = 4991.0010 kcal/mol (4987.1557 without restraints) Performing minimization step: 4007. Total energy = 4990.3870 kcal/mol (4986.5426 without restraints) Performing minimization step: 4008. Total energy = 4989.7734 kcal/mol (4985.9299 without restraints) Performing minimization step: 4009. Total energy = 4989.1604 kcal/mol (4985.3178 without restraints) Performing minimization step: 4010. Total energy = 4988.5483 kcal/mol (4984.7065 without restraints) Performing minimization step: 4011. Total energy = 4987.9361 kcal/mol (4984.0952 without restraints) Performing minimization step: 4012. Total energy = 4987.3247 kcal/mol (4983.4846 without restraints) Performing minimization step: 4013. Total energy = 4986.7135 kcal/mol (4982.8743 without restraints) Performing minimization step: 4014. Total energy = 4986.1029 kcal/mol (4982.2648 without restraints) Performing minimization step: 4015. Total energy = 4985.4928 kcal/mol (4981.6553 without restraints) Performing minimization step: 4016. Total energy = 4984.8829 kcal/mol (4981.0464 without restraints) Performing minimization step: 4017. Total energy = 4984.2737 kcal/mol (4980.4381 without restraints) Performing minimization step: 4018. Total energy = 4983.6649 kcal/mol (4979.8301 without restraints) Performing minimization step: 4019. Total energy = 4983.0568 kcal/mol (4979.2232 without restraints) Performing minimization step: 4020. Total energy = 4982.4491 kcal/mol (4978.6161 without restraints) Performing minimization step: 4021. Total energy = 4981.8414 kcal/mol (4978.0092 without restraints) Performing minimization step: 4022. Total energy = 4981.2346 kcal/mol (4977.4034 without restraints) Performing minimization step: 4023. Total energy = 4980.6288 kcal/mol (4976.7986 without restraints) Performing minimization step: 4024. Total energy = 4980.0233 kcal/mol (4976.1937 without restraints) Performing minimization step: 4025. Total energy = 4979.4180 kcal/mol (4975.5893 without restraints) Performing minimization step: 4026. Total energy = 4978.8128 kcal/mol (4974.9850 without restraints) Performing minimization step: 4027. Total energy = 4978.2083 kcal/mol (4974.3814 without restraints) Performing minimization step: 4028. Total energy = 4977.6043 kcal/mol (4973.7783 without restraints) Performing minimization step: 4029. Total energy = 4977.0007 kcal/mol (4973.1755 without restraints) Performing minimization step: 4030. Total energy = 4976.3977 kcal/mol (4972.5734 without restraints) Performing minimization step: 4031. Total energy = 4975.7955 kcal/mol (4971.9721 without restraints) Performing minimization step: 4032. Total energy = 4975.1934 kcal/mol (4971.3708 without restraints) Performing minimization step: 4033. Total energy = 4974.5914 kcal/mol (4970.7696 without restraints) Performing minimization step: 4034. Total energy = 4973.9903 kcal/mol (4970.1694 without restraints) Performing minimization step: 4035. Total energy = 4973.3897 kcal/mol (4969.5696 without restraints) Performing minimization step: 4036. Total energy = 4972.7894 kcal/mol (4968.9702 without restraints) Performing minimization step: 4037. Total energy = 4972.1896 kcal/mol (4968.3713 without restraints) Performing minimization step: 4038. Total energy = 4971.5901 kcal/mol (4967.7726 without restraints) Performing minimization step: 4039. Total energy = 4970.9907 kcal/mol (4967.1741 without restraints) Performing minimization step: 4040. Total energy = 4970.3919 kcal/mol (4966.5761 without restraints) Performing minimization step: 4041. Total energy = 4969.7934 kcal/mol (4965.9785 without restraints) Performing minimization step: 4042. Total energy = 4969.1957 kcal/mol (4965.3817 without restraints) Performing minimization step: 4043. Total energy = 4968.5983 kcal/mol (4964.7852 without restraints) Performing minimization step: 4044. Total energy = 4968.0012 kcal/mol (4964.1889 without restraints) Performing minimization step: 4045. Total energy = 4967.4046 kcal/mol (4963.5932 without restraints) Performing minimization step: 4046. Total energy = 4966.8083 kcal/mol (4962.9977 without restraints) Performing minimization step: 4047. Total energy = 4966.2130 kcal/mol (4962.4032 without restraints) Performing minimization step: 4048. Total energy = 4965.6173 kcal/mol (4961.8083 without restraints) Performing minimization step: 4049. Total energy = 4965.0219 kcal/mol (4961.2139 without restraints) Performing minimization step: 4050. Total energy = 4964.4278 kcal/mol (4960.6206 without restraints) Performing minimization step: 4051. Total energy = 4963.8340 kcal/mol (4960.0277 without restraints) Performing minimization step: 4052. Total energy = 4963.2403 kcal/mol (4959.4349 without restraints) Performing minimization step: 4053. Total energy = 4962.6476 kcal/mol (4958.8431 without restraints) Performing minimization step: 4054. Total energy = 4962.0552 kcal/mol (4958.2515 without restraints) Performing minimization step: 4055. Total energy = 4961.4634 kcal/mol (4957.6606 without restraints) Performing minimization step: 4056. Total energy = 4960.8719 kcal/mol (4957.0699 without restraints) Performing minimization step: 4057. Total energy = 4960.2814 kcal/mol (4956.4802 without restraints) Performing minimization step: 4058. Total energy = 4959.6908 kcal/mol (4955.8903 without restraints) Performing minimization step: 4059. Total energy = 4959.1010 kcal/mol (4955.3016 without restraints) Performing minimization step: 4060. Total energy = 4958.5113 kcal/mol (4954.7127 without restraints) Performing minimization step: 4061. Total energy = 4957.9218 kcal/mol (4954.1241 without restraints) Performing minimization step: 4062. Total energy = 4957.3328 kcal/mol (4953.5359 without restraints) Performing minimization step: 4063. Total energy = 4956.7443 kcal/mol (4952.9482 without restraints) Performing minimization step: 4064. Total energy = 4956.1560 kcal/mol (4952.3607 without restraints) Performing minimization step: 4065. Total energy = 4955.5685 kcal/mol (4951.7741 without restraints) Performing minimization step: 4066. Total energy = 4954.9818 kcal/mol (4951.1884 without restraints) Performing minimization step: 4067. Total energy = 4954.3953 kcal/mol (4950.6026 without restraints) Performing minimization step: 4068. Total energy = 4953.8091 kcal/mol (4950.0173 without restraints) Performing minimization step: 4069. Total energy = 4953.2232 kcal/mol (4949.4322 without restraints) Performing minimization step: 4070. Total energy = 4952.6382 kcal/mol (4948.8481 without restraints) Performing minimization step: 4071. Total energy = 4952.0534 kcal/mol (4948.2640 without restraints) Performing minimization step: 4072. Total energy = 4951.4694 kcal/mol (4947.6808 without restraints) Performing minimization step: 4073. Total energy = 4950.8851 kcal/mol (4947.0975 without restraints) Performing minimization step: 4074. Total energy = 4950.3019 kcal/mol (4946.5151 without restraints) Performing minimization step: 4075. Total energy = 4949.7185 kcal/mol (4945.9326 without restraints) Performing minimization step: 4076. Total energy = 4949.1354 kcal/mol (4945.3503 without restraints) Performing minimization step: 4077. Total energy = 4948.5528 kcal/mol (4944.7685 without restraints) Performing minimization step: 4078. Total energy = 4947.9711 kcal/mol (4944.1878 without restraints) Performing minimization step: 4079. Total energy = 4947.3899 kcal/mol (4943.6074 without restraints) Performing minimization step: 4080. Total energy = 4946.8089 kcal/mol (4943.0272 without restraints) Performing minimization step: 4081. Total energy = 4946.2290 kcal/mol (4942.4481 without restraints) Performing minimization step: 4082. Total energy = 4945.6487 kcal/mol (4941.8687 without restraints) Performing minimization step: 4083. Total energy = 4945.0688 kcal/mol (4941.2896 without restraints) Performing minimization step: 4084. Total energy = 4944.4894 kcal/mol (4940.7109 without restraints) Performing minimization step: 4085. Total energy = 4943.9102 kcal/mol (4940.1325 without restraints) Performing minimization step: 4086. Total energy = 4943.3312 kcal/mol (4939.5545 without restraints) Performing minimization step: 4087. Total energy = 4942.7532 kcal/mol (4938.9773 without restraints) Performing minimization step: 4088. Total energy = 4942.1753 kcal/mol (4938.4005 without restraints) Performing minimization step: 4089. Total energy = 4941.5987 kcal/mol (4937.8246 without restraints) Performing minimization step: 4090. Total energy = 4941.0222 kcal/mol (4937.2489 without restraints) Performing minimization step: 4091. Total energy = 4940.4455 kcal/mol (4936.6730 without restraints) Performing minimization step: 4092. Total energy = 4939.8694 kcal/mol (4936.0977 without restraints) Performing minimization step: 4093. Total energy = 4939.2938 kcal/mol (4935.5230 without restraints) Performing minimization step: 4094. Total energy = 4938.7187 kcal/mol (4934.9487 without restraints) Performing minimization step: 4095. Total energy = 4938.1439 kcal/mol (4934.3746 without restraints) Performing minimization step: 4096. Total energy = 4937.5695 kcal/mol (4933.8011 without restraints) Performing minimization step: 4097. Total energy = 4936.9956 kcal/mol (4933.2280 without restraints) Performing minimization step: 4098. Total energy = 4936.4223 kcal/mol (4932.6557 without restraints) Performing minimization step: 4099. Total energy = 4935.8495 kcal/mol (4932.0835 without restraints) Performing minimization step: 4100. Total energy = 4935.2767 kcal/mol (4931.5117 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 4934.7050 kcal/mol (4930.9408 without restraints) Performing minimization step: 4102. Total energy = 4934.1340 kcal/mol (4930.3706 without restraints) Performing minimization step: 4103. Total energy = 4933.5627 kcal/mol (4929.8001 without restraints) Performing minimization step: 4104. Total energy = 4932.9917 kcal/mol (4929.2299 without restraints) Performing minimization step: 4105. Total energy = 4932.4213 kcal/mol (4928.6605 without restraints) Performing minimization step: 4106. Total energy = 4931.8515 kcal/mol (4928.0914 without restraints) Performing minimization step: 4107. Total energy = 4931.2823 kcal/mol (4927.5231 without restraints) Performing minimization step: 4108. Total energy = 4930.7130 kcal/mol (4926.9546 without restraints) Performing minimization step: 4109. Total energy = 4930.1444 kcal/mol (4926.3868 without restraints) Performing minimization step: 4110. Total energy = 4929.5759 kcal/mol (4925.8192 without restraints) Performing minimization step: 4111. Total energy = 4929.0084 kcal/mol (4925.2525 without restraints) Performing minimization step: 4112. Total energy = 4928.4409 kcal/mol (4924.6858 without restraints) Performing minimization step: 4113. Total energy = 4927.8739 kcal/mol (4924.1197 without restraints) Performing minimization step: 4114. Total energy = 4927.3073 kcal/mol (4923.5539 without restraints) Performing minimization step: 4115. Total energy = 4926.7411 kcal/mol (4922.9885 without restraints) Performing minimization step: 4116. Total energy = 4926.1755 kcal/mol (4922.4237 without restraints) Performing minimization step: 4117. Total energy = 4925.6101 kcal/mol (4921.8591 without restraints) Performing minimization step: 4118. Total energy = 4925.0453 kcal/mol (4921.2951 without restraints) Performing minimization step: 4119. Total energy = 4924.4806 kcal/mol (4920.7313 without restraints) Performing minimization step: 4120. Total energy = 4923.9162 kcal/mol (4920.1677 without restraints) Performing minimization step: 4121. Total energy = 4923.3524 kcal/mol (4919.6047 without restraints) Performing minimization step: 4122. Total energy = 4922.7895 kcal/mol (4919.0427 without restraints) Performing minimization step: 4123. Total energy = 4922.2267 kcal/mol (4918.4806 without restraints) Performing minimization step: 4124. Total energy = 4921.6639 kcal/mol (4917.9187 without restraints) Performing minimization step: 4125. Total energy = 4921.1015 kcal/mol (4917.3571 without restraints) Performing minimization step: 4126. Total energy = 4920.5400 kcal/mol (4916.7964 without restraints) Performing minimization step: 4127. Total energy = 4919.9787 kcal/mol (4916.2359 without restraints) Performing minimization step: 4128. Total energy = 4919.4180 kcal/mol (4915.6760 without restraints) Performing minimization step: 4129. Total energy = 4918.8575 kcal/mol (4915.1163 without restraints) Performing minimization step: 4130. Total energy = 4918.2972 kcal/mol (4914.5569 without restraints) Performing minimization step: 4131. Total energy = 4917.7374 kcal/mol (4913.9979 without restraints) Performing minimization step: 4132. Total energy = 4917.1782 kcal/mol (4913.4395 without restraints) Performing minimization step: 4133. Total energy = 4916.6196 kcal/mol (4912.8817 without restraints) Performing minimization step: 4134. Total energy = 4916.0610 kcal/mol (4912.3239 without restraints) Performing minimization step: 4135. Total energy = 4915.5029 kcal/mol (4911.7666 without restraints) Performing minimization step: 4136. Total energy = 4914.9455 kcal/mol (4911.2101 without restraints) Performing minimization step: 4137. Total energy = 4914.3884 kcal/mol (4910.6538 without restraints) Performing minimization step: 4138. Total energy = 4913.8317 kcal/mol (4910.0978 without restraints) Performing minimization step: 4139. Total energy = 4913.2751 kcal/mol (4909.5420 without restraints) Performing minimization step: 4140. Total energy = 4912.7197 kcal/mol (4908.9875 without restraints) Performing minimization step: 4141. Total energy = 4912.1645 kcal/mol (4908.4331 without restraints) Performing minimization step: 4142. Total energy = 4911.6096 kcal/mol (4907.8790 without restraints) Performing minimization step: 4143. Total energy = 4911.0550 kcal/mol (4907.3252 without restraints) Performing minimization step: 4144. Total energy = 4910.5007 kcal/mol (4906.7718 without restraints) Performing minimization step: 4145. Total energy = 4909.9469 kcal/mol (4906.2187 without restraints) Performing minimization step: 4146. Total energy = 4909.3933 kcal/mol (4905.6660 without restraints) Performing minimization step: 4147. Total energy = 4908.8403 kcal/mol (4905.1138 without restraints) Performing minimization step: 4148. Total energy = 4908.2876 kcal/mol (4904.5619 without restraints) Performing minimization step: 4149. Total energy = 4907.7350 kcal/mol (4904.0101 without restraints) Performing minimization step: 4150. Total energy = 4907.1832 kcal/mol (4903.4590 without restraints) Performing minimization step: 4151. Total energy = 4906.6317 kcal/mol (4902.9084 without restraints) Performing minimization step: 4152. Total energy = 4906.0809 kcal/mol (4902.3585 without restraints) Performing minimization step: 4153. Total energy = 4905.5304 kcal/mol (4901.8087 without restraints) Performing minimization step: 4154. Total energy = 4904.9802 kcal/mol (4901.2593 without restraints) Performing minimization step: 4155. Total energy = 4904.4301 kcal/mol (4900.7100 without restraints) Performing minimization step: 4156. Total energy = 4903.8809 kcal/mol (4900.1616 without restraints) Performing minimization step: 4157. Total energy = 4903.3320 kcal/mol (4899.6136 without restraints) Performing minimization step: 4158. Total energy = 4902.7832 kcal/mol (4899.0654 without restraints) Performing minimization step: 4159. Total energy = 4902.2350 kcal/mol (4898.5182 without restraints) Performing minimization step: 4160. Total energy = 4901.6873 kcal/mol (4897.9713 without restraints) Performing minimization step: 4161. Total energy = 4901.1399 kcal/mol (4897.4247 without restraints) Performing minimization step: 4162. Total energy = 4900.5929 kcal/mol (4896.8784 without restraints) Performing minimization step: 4163. Total energy = 4900.0464 kcal/mol (4896.3327 without restraints) Performing minimization step: 4164. Total energy = 4899.5001 kcal/mol (4895.7872 without restraints) Performing minimization step: 4165. Total energy = 4898.9546 kcal/mol (4895.2425 without restraints) Performing minimization step: 4166. Total energy = 4898.4093 kcal/mol (4894.6980 without restraints) Performing minimization step: 4167. Total energy = 4897.8641 kcal/mol (4894.1537 without restraints) Performing minimization step: 4168. Total energy = 4897.3196 kcal/mol (4893.6100 without restraints) Performing minimization step: 4169. Total energy = 4896.7754 kcal/mol (4893.0665 without restraints) Performing minimization step: 4170. Total energy = 4896.2315 kcal/mol (4892.5234 without restraints) Performing minimization step: 4171. Total energy = 4895.6880 kcal/mol (4891.9808 without restraints) Performing minimization step: 4172. Total energy = 4895.1450 kcal/mol (4891.4385 without restraints) Performing minimization step: 4173. Total energy = 4894.6025 kcal/mol (4890.8968 without restraints) Performing minimization step: 4174. Total energy = 4894.0603 kcal/mol (4890.3555 without restraints) Performing minimization step: 4175. Total energy = 4893.5190 kcal/mol (4889.8150 without restraints) Performing minimization step: 4176. Total energy = 4892.9776 kcal/mol (4889.2743 without restraints) Performing minimization step: 4177. Total energy = 4892.4368 kcal/mol (4888.7343 without restraints) Performing minimization step: 4178. Total energy = 4891.8963 kcal/mol (4888.1946 without restraints) Performing minimization step: 4179. Total energy = 4891.3559 kcal/mol (4887.6550 without restraints) Performing minimization step: 4180. Total energy = 4890.8161 kcal/mol (4887.1160 without restraints) Performing minimization step: 4181. Total energy = 4890.2766 kcal/mol (4886.5773 without restraints) Performing minimization step: 4182. Total energy = 4889.7377 kcal/mol (4886.0392 without restraints) Performing minimization step: 4183. Total energy = 4889.1993 kcal/mol (4885.5015 without restraints) Performing minimization step: 4184. Total energy = 4888.6611 kcal/mol (4884.9641 without restraints) Performing minimization step: 4185. Total energy = 4888.1232 kcal/mol (4884.4273 without restraints) Performing minimization step: 4186. Total energy = 4887.5859 kcal/mol (4883.8905 without restraints) Performing minimization step: 4187. Total energy = 4887.0487 kcal/mol (4883.3539 without restraints) Performing minimization step: 4188. Total energy = 4886.5121 kcal/mol (4882.8183 without restraints) Performing minimization step: 4189. Total energy = 4885.9763 kcal/mol (4882.2833 without restraints) Performing minimization step: 4190. Total energy = 4885.4401 kcal/mol (4881.7478 without restraints) Performing minimization step: 4191. Total energy = 4884.9045 kcal/mol (4881.2131 without restraints) Performing minimization step: 4192. Total energy = 4884.3695 kcal/mol (4880.6789 without restraints) Performing minimization step: 4193. Total energy = 4883.8351 kcal/mol (4880.1453 without restraints) Performing minimization step: 4194. Total energy = 4883.3007 kcal/mol (4879.6117 without restraints) Performing minimization step: 4195. Total energy = 4882.7670 kcal/mol (4879.0788 without restraints) Performing minimization step: 4196. Total energy = 4882.2331 kcal/mol (4878.5456 without restraints) Performing minimization step: 4197. Total energy = 4881.7001 kcal/mol (4878.0134 without restraints) Performing minimization step: 4198. Total energy = 4881.1675 kcal/mol (4877.4816 without restraints) Performing minimization step: 4199. Total energy = 4880.6350 kcal/mol (4876.9498 without restraints) Performing minimization step: 4200. Total energy = 4880.1028 kcal/mol (4876.4185 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 4879.5711 kcal/mol (4875.8875 without restraints) Performing minimization step: 4202. Total energy = 4879.0397 kcal/mol (4875.3569 without restraints) Performing minimization step: 4203. Total energy = 4878.5087 kcal/mol (4874.8267 without restraints) Performing minimization step: 4204. Total energy = 4877.9783 kcal/mol (4874.2971 without restraints) Performing minimization step: 4205. Total energy = 4877.4481 kcal/mol (4873.7677 without restraints) Performing minimization step: 4206. Total energy = 4876.9183 kcal/mol (4873.2387 without restraints) Performing minimization step: 4207. Total energy = 4876.3891 kcal/mol (4872.7102 without restraints) Performing minimization step: 4208. Total energy = 4875.8599 kcal/mol (4872.1818 without restraints) Performing minimization step: 4209. Total energy = 4875.3313 kcal/mol (4871.6540 without restraints) Performing minimization step: 4210. Total energy = 4874.8031 kcal/mol (4871.1266 without restraints) Performing minimization step: 4211. Total energy = 4874.2754 kcal/mol (4870.5996 without restraints) Performing minimization step: 4212. Total energy = 4873.7487 kcal/mol (4870.0738 without restraints) Performing minimization step: 4213. Total energy = 4873.2218 kcal/mol (4869.5477 without restraints) Performing minimization step: 4214. Total energy = 4872.6956 kcal/mol (4869.0222 without restraints) Performing minimization step: 4215. Total energy = 4872.1695 kcal/mol (4868.4968 without restraints) Performing minimization step: 4216. Total energy = 4871.6434 kcal/mol (4867.9717 without restraints) Performing minimization step: 4217. Total energy = 4871.1181 kcal/mol (4867.4471 without restraints) Performing minimization step: 4218. Total energy = 4870.5929 kcal/mol (4866.9227 without restraints) Performing minimization step: 4219. Total energy = 4870.0686 kcal/mol (4866.3992 without restraints) Performing minimization step: 4220. Total energy = 4869.5447 kcal/mol (4865.8761 without restraints) Performing minimization step: 4221. Total energy = 4869.0212 kcal/mol (4865.3533 without restraints) Performing minimization step: 4222. Total energy = 4868.4975 kcal/mol (4864.8303 without restraints) Performing minimization step: 4223. Total energy = 4867.9744 kcal/mol (4864.3080 without restraints) Performing minimization step: 4224. Total energy = 4867.4516 kcal/mol (4863.7859 without restraints) Performing minimization step: 4225. Total energy = 4866.9294 kcal/mol (4863.2646 without restraints) Performing minimization step: 4226. Total energy = 4866.4071 kcal/mol (4862.7431 without restraints) Performing minimization step: 4227. Total energy = 4865.8853 kcal/mol (4862.2220 without restraints) Performing minimization step: 4228. Total energy = 4865.3638 kcal/mol (4861.7013 without restraints) Performing minimization step: 4229. Total energy = 4864.8433 kcal/mol (4861.1816 without restraints) Performing minimization step: 4230. Total energy = 4864.3230 kcal/mol (4860.6621 without restraints) Performing minimization step: 4231. Total energy = 4863.8034 kcal/mol (4860.1432 without restraints) Performing minimization step: 4232. Total energy = 4863.2836 kcal/mol (4859.6242 without restraints) Performing minimization step: 4233. Total energy = 4862.7637 kcal/mol (4859.1051 without restraints) Performing minimization step: 4234. Total energy = 4862.2445 kcal/mol (4858.5866 without restraints) Performing minimization step: 4235. Total energy = 4861.7257 kcal/mol (4858.0686 without restraints) Performing minimization step: 4236. Total energy = 4861.2073 kcal/mol (4857.5509 without restraints) Performing minimization step: 4237. Total energy = 4860.6894 kcal/mol (4857.0338 without restraints) Performing minimization step: 4238. Total energy = 4860.1722 kcal/mol (4856.5174 without restraints) Performing minimization step: 4239. Total energy = 4859.6549 kcal/mol (4856.0010 without restraints) Performing minimization step: 4240. Total energy = 4859.1381 kcal/mol (4855.4848 without restraints) Performing minimization step: 4241. Total energy = 4858.6216 kcal/mol (4854.9692 without restraints) Performing minimization step: 4242. Total energy = 4858.1055 kcal/mol (4854.4537 without restraints) Performing minimization step: 4243. Total energy = 4857.5896 kcal/mol (4853.9386 without restraints) Performing minimization step: 4244. Total energy = 4857.0744 kcal/mol (4853.4242 without restraints) Performing minimization step: 4245. Total energy = 4856.5592 kcal/mol (4852.9098 without restraints) Performing minimization step: 4246. Total energy = 4856.0446 kcal/mol (4852.3960 without restraints) Performing minimization step: 4247. Total energy = 4855.5303 kcal/mol (4851.8824 without restraints) Performing minimization step: 4248. Total energy = 4855.0162 kcal/mol (4851.3691 without restraints) Performing minimization step: 4249. Total energy = 4854.5022 kcal/mol (4850.8558 without restraints) Performing minimization step: 4250. Total energy = 4853.9890 kcal/mol (4850.3434 without restraints) Performing minimization step: 4251. Total energy = 4853.4765 kcal/mol (4849.8317 without restraints) Performing minimization step: 4252. Total energy = 4852.9641 kcal/mol (4849.3202 without restraints) Performing minimization step: 4253. Total energy = 4852.4526 kcal/mol (4848.8092 without restraints) Performing minimization step: 4254. Total energy = 4851.9409 kcal/mol (4848.2983 without restraints) Performing minimization step: 4255. Total energy = 4851.4296 kcal/mol (4847.7879 without restraints) Performing minimization step: 4256. Total energy = 4850.9185 kcal/mol (4847.2775 without restraints) Performing minimization step: 4257. Total energy = 4850.4089 kcal/mol (4846.7686 without restraints) Performing minimization step: 4258. Total energy = 4849.8988 kcal/mol (4846.2593 without restraints) Performing minimization step: 4259. Total energy = 4849.3888 kcal/mol (4845.7501 without restraints) Performing minimization step: 4260. Total energy = 4848.8793 kcal/mol (4845.2414 without restraints) Performing minimization step: 4261. Total energy = 4848.3701 kcal/mol (4844.7329 without restraints) Performing minimization step: 4262. Total energy = 4847.8616 kcal/mol (4844.2252 without restraints) Performing minimization step: 4263. Total energy = 4847.3531 kcal/mol (4843.7174 without restraints) Performing minimization step: 4264. Total energy = 4846.8451 kcal/mol (4843.2103 without restraints) Performing minimization step: 4265. Total energy = 4846.3376 kcal/mol (4842.7035 without restraints) Performing minimization step: 4266. Total energy = 4845.8304 kcal/mol (4842.1970 without restraints) Performing minimization step: 4267. Total energy = 4845.3233 kcal/mol (4841.6906 without restraints) Performing minimization step: 4268. Total energy = 4844.8166 kcal/mol (4841.1847 without restraints) Performing minimization step: 4269. Total energy = 4844.3104 kcal/mol (4840.6791 without restraints) Performing minimization step: 4270. Total energy = 4843.8044 kcal/mol (4840.1739 without restraints) Performing minimization step: 4271. Total energy = 4843.2987 kcal/mol (4839.6691 without restraints) Performing minimization step: 4272. Total energy = 4842.7934 kcal/mol (4839.1646 without restraints) Performing minimization step: 4273. Total energy = 4842.2886 kcal/mol (4838.6605 without restraints) Performing minimization step: 4274. Total energy = 4841.7841 kcal/mol (4838.1569 without restraints) Performing minimization step: 4275. Total energy = 4841.2798 kcal/mol (4837.6532 without restraints) Performing minimization step: 4276. Total energy = 4840.7757 kcal/mol (4837.1499 without restraints) Performing minimization step: 4277. Total energy = 4840.2718 kcal/mol (4836.6467 without restraints) Performing minimization step: 4278. Total energy = 4839.7691 kcal/mol (4836.1448 without restraints) Performing minimization step: 4279. Total energy = 4839.2670 kcal/mol (4835.6435 without restraints) Performing minimization step: 4280. Total energy = 4838.7646 kcal/mol (4835.1419 without restraints) Performing minimization step: 4281. Total energy = 4838.2626 kcal/mol (4834.6405 without restraints) Performing minimization step: 4282. Total energy = 4837.7611 kcal/mol (4834.1398 without restraints) Performing minimization step: 4283. Total energy = 4837.2600 kcal/mol (4833.6396 without restraints) Performing minimization step: 4284. Total energy = 4836.7596 kcal/mol (4833.1398 without restraints) Performing minimization step: 4285. Total energy = 4836.2590 kcal/mol (4832.6400 without restraints) Performing minimization step: 4286. Total energy = 4835.7587 kcal/mol (4832.1404 without restraints) Performing minimization step: 4287. Total energy = 4835.2593 kcal/mol (4831.6417 without restraints) Performing minimization step: 4288. Total energy = 4834.7596 kcal/mol (4831.1429 without restraints) Performing minimization step: 4289. Total energy = 4834.2602 kcal/mol (4830.6442 without restraints) Performing minimization step: 4290. Total energy = 4833.7616 kcal/mol (4830.1462 without restraints) Performing minimization step: 4291. Total energy = 4833.2630 kcal/mol (4829.6484 without restraints) Performing minimization step: 4292. Total energy = 4832.7651 kcal/mol (4829.1513 without restraints) Performing minimization step: 4293. Total energy = 4832.2677 kcal/mol (4828.6546 without restraints) Performing minimization step: 4294. Total energy = 4831.7704 kcal/mol (4828.1582 without restraints) Performing minimization step: 4295. Total energy = 4831.2735 kcal/mol (4827.6619 without restraints) Performing minimization step: 4296. Total energy = 4830.7768 kcal/mol (4827.1660 without restraints) Performing minimization step: 4297. Total energy = 4830.2805 kcal/mol (4826.6705 without restraints) Performing minimization step: 4298. Total energy = 4829.7850 kcal/mol (4826.1758 without restraints) Performing minimization step: 4299. Total energy = 4829.2898 kcal/mol (4825.6812 without restraints) Performing minimization step: 4300. Total energy = 4828.7945 kcal/mol (4825.1867 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 4828.2995 kcal/mol (4824.6924 without restraints) Performing minimization step: 4302. Total energy = 4827.8050 kcal/mol (4824.1988 without restraints) Performing minimization step: 4303. Total energy = 4827.3108 kcal/mol (4823.7053 without restraints) Performing minimization step: 4304. Total energy = 4826.8173 kcal/mol (4823.2125 without restraints) Performing minimization step: 4305. Total energy = 4826.3239 kcal/mol (4822.7199 without restraints) Performing minimization step: 4306. Total energy = 4825.8308 kcal/mol (4822.2274 without restraints) Performing minimization step: 4307. Total energy = 4825.3377 kcal/mol (4821.7351 without restraints) Performing minimization step: 4308. Total energy = 4824.8452 kcal/mol (4821.2433 without restraints) Performing minimization step: 4309. Total energy = 4824.3536 kcal/mol (4820.7525 without restraints) Performing minimization step: 4310. Total energy = 4823.8619 kcal/mol (4820.2615 without restraints) Performing minimization step: 4311. Total energy = 4823.3703 kcal/mol (4819.7706 without restraints) Performing minimization step: 4312. Total energy = 4822.8792 kcal/mol (4819.2803 without restraints) Performing minimization step: 4313. Total energy = 4822.3886 kcal/mol (4818.7905 without restraints) Performing minimization step: 4314. Total energy = 4821.8981 kcal/mol (4818.3008 without restraints) Performing minimization step: 4315. Total energy = 4821.4081 kcal/mol (4817.8115 without restraints) Performing minimization step: 4316. Total energy = 4820.9184 kcal/mol (4817.3225 without restraints) Performing minimization step: 4317. Total energy = 4820.4294 kcal/mol (4816.8343 without restraints) Performing minimization step: 4318. Total energy = 4819.9407 kcal/mol (4816.3463 without restraints) Performing minimization step: 4319. Total energy = 4819.4511 kcal/mol (4815.8575 without restraints) Performing minimization step: 4320. Total energy = 4818.9630 kcal/mol (4815.3701 without restraints) Performing minimization step: 4321. Total energy = 4818.4749 kcal/mol (4814.8828 without restraints) Performing minimization step: 4322. Total energy = 4817.9875 kcal/mol (4814.3960 without restraints) Performing minimization step: 4323. Total energy = 4817.5005 kcal/mol (4813.9099 without restraints) Performing minimization step: 4324. Total energy = 4817.0137 kcal/mol (4813.4239 without restraints) Performing minimization step: 4325. Total energy = 4816.5274 kcal/mol (4812.9382 without restraints) Performing minimization step: 4326. Total energy = 4816.0411 kcal/mol (4812.4527 without restraints) Performing minimization step: 4327. Total energy = 4815.5554 kcal/mol (4811.9677 without restraints) Performing minimization step: 4328. Total energy = 4815.0698 kcal/mol (4811.4828 without restraints) Performing minimization step: 4329. Total energy = 4814.5845 kcal/mol (4810.9983 without restraints) Performing minimization step: 4330. Total energy = 4814.0999 kcal/mol (4810.5144 without restraints) Performing minimization step: 4331. Total energy = 4813.6153 kcal/mol (4810.0305 without restraints) Performing minimization step: 4332. Total energy = 4813.1313 kcal/mol (4809.5473 without restraints) Performing minimization step: 4333. Total energy = 4812.6479 kcal/mol (4809.0646 without restraints) Performing minimization step: 4334. Total energy = 4812.1642 kcal/mol (4808.5817 without restraints) Performing minimization step: 4335. Total energy = 4811.6810 kcal/mol (4808.0991 without restraints) Performing minimization step: 4336. Total energy = 4811.1982 kcal/mol (4807.6172 without restraints) Performing minimization step: 4337. Total energy = 4810.7158 kcal/mol (4807.1355 without restraints) Performing minimization step: 4338. Total energy = 4810.2337 kcal/mol (4806.6542 without restraints) Performing minimization step: 4339. Total energy = 4809.7520 kcal/mol (4806.1731 without restraints) Performing minimization step: 4340. Total energy = 4809.2708 kcal/mol (4805.6927 without restraints) Performing minimization step: 4341. Total energy = 4808.7895 kcal/mol (4805.2123 without restraints) Performing minimization step: 4342. Total energy = 4808.3090 kcal/mol (4804.7324 without restraints) Performing minimization step: 4343. Total energy = 4807.8285 kcal/mol (4804.2527 without restraints) Performing minimization step: 4344. Total energy = 4807.3485 kcal/mol (4803.7733 without restraints) Performing minimization step: 4345. Total energy = 4806.8687 kcal/mol (4803.2942 without restraints) Performing minimization step: 4346. Total energy = 4806.3892 kcal/mol (4802.8155 without restraints) Performing minimization step: 4347. Total energy = 4805.9099 kcal/mol (4802.3370 without restraints) Performing minimization step: 4348. Total energy = 4805.4310 kcal/mol (4801.8588 without restraints) Performing minimization step: 4349. Total energy = 4804.9526 kcal/mol (4801.3810 without restraints) Performing minimization step: 4350. Total energy = 4804.4745 kcal/mol (4800.9037 without restraints) Performing minimization step: 4351. Total energy = 4803.9967 kcal/mol (4800.4267 without restraints) Performing minimization step: 4352. Total energy = 4803.5193 kcal/mol (4799.9500 without restraints) Performing minimization step: 4353. Total energy = 4803.0424 kcal/mol (4799.4739 without restraints) Performing minimization step: 4354. Total energy = 4802.5657 kcal/mol (4798.9978 without restraints) Performing minimization step: 4355. Total energy = 4802.0895 kcal/mol (4798.5223 without restraints) Performing minimization step: 4356. Total energy = 4801.6135 kcal/mol (4798.0471 without restraints) Performing minimization step: 4357. Total energy = 4801.1382 kcal/mol (4797.5726 without restraints) Performing minimization step: 4358. Total energy = 4800.6628 kcal/mol (4797.0979 without restraints) Performing minimization step: 4359. Total energy = 4800.1880 kcal/mol (4796.6239 without restraints) Performing minimization step: 4360. Total energy = 4799.7134 kcal/mol (4796.1499 without restraints) Performing minimization step: 4361. Total energy = 4799.2390 kcal/mol (4795.6762 without restraints) Performing minimization step: 4362. Total energy = 4798.7651 kcal/mol (4795.2031 without restraints) Performing minimization step: 4363. Total energy = 4798.2915 kcal/mol (4794.7303 without restraints) Performing minimization step: 4364. Total energy = 4797.8181 kcal/mol (4794.2576 without restraints) Performing minimization step: 4365. Total energy = 4797.3451 kcal/mol (4793.7853 without restraints) Performing minimization step: 4366. Total energy = 4796.8725 kcal/mol (4793.3134 without restraints) Performing minimization step: 4367. Total energy = 4796.4003 kcal/mol (4792.8419 without restraints) Performing minimization step: 4368. Total energy = 4795.9285 kcal/mol (4792.3708 without restraints) Performing minimization step: 4369. Total energy = 4795.4565 kcal/mol (4791.8996 without restraints) Performing minimization step: 4370. Total energy = 4794.9852 kcal/mol (4791.4291 without restraints) Performing minimization step: 4371. Total energy = 4794.5144 kcal/mol (4790.9589 without restraints) Performing minimization step: 4372. Total energy = 4794.0444 kcal/mol (4790.4898 without restraints) Performing minimization step: 4373. Total energy = 4793.5739 kcal/mol (4790.0199 without restraints) Performing minimization step: 4374. Total energy = 4793.1042 kcal/mol (4789.5510 without restraints) Performing minimization step: 4375. Total energy = 4792.6346 kcal/mol (4789.0820 without restraints) Performing minimization step: 4376. Total energy = 4792.1648 kcal/mol (4788.6130 without restraints) Performing minimization step: 4377. Total energy = 4791.6956 kcal/mol (4788.1443 without restraints) Performing minimization step: 4378. Total energy = 4791.2266 kcal/mol (4787.6762 without restraints) Performing minimization step: 4379. Total energy = 4790.7588 kcal/mol (4787.2091 without restraints) Performing minimization step: 4380. Total energy = 4790.2907 kcal/mol (4786.7418 without restraints) Performing minimization step: 4381. Total energy = 4789.8228 kcal/mol (4786.2744 without restraints) Performing minimization step: 4382. Total energy = 4789.3552 kcal/mol (4785.8077 without restraints) Performing minimization step: 4383. Total energy = 4788.8881 kcal/mol (4785.3413 without restraints) Performing minimization step: 4384. Total energy = 4788.4216 kcal/mol (4784.8756 without restraints) Performing minimization step: 4385. Total energy = 4787.9550 kcal/mol (4784.4097 without restraints) Performing minimization step: 4386. Total energy = 4787.4890 kcal/mol (4783.9444 without restraints) Performing minimization step: 4387. Total energy = 4787.0230 kcal/mol (4783.4791 without restraints) Performing minimization step: 4388. Total energy = 4786.5574 kcal/mol (4783.0143 without restraints) Performing minimization step: 4389. Total energy = 4786.0924 kcal/mol (4782.5500 without restraints) Performing minimization step: 4390. Total energy = 4785.6276 kcal/mol (4782.0860 without restraints) Performing minimization step: 4391. Total energy = 4785.1632 kcal/mol (4781.6222 without restraints) Performing minimization step: 4392. Total energy = 4784.6992 kcal/mol (4781.1589 without restraints) Performing minimization step: 4393. Total energy = 4784.2353 kcal/mol (4780.6958 without restraints) Performing minimization step: 4394. Total energy = 4783.7720 kcal/mol (4780.2330 without restraints) Performing minimization step: 4395. Total energy = 4783.3087 kcal/mol (4779.7707 without restraints) Performing minimization step: 4396. Total energy = 4782.8459 kcal/mol (4779.3085 without restraints) Performing minimization step: 4397. Total energy = 4782.3833 kcal/mol (4778.8467 without restraints) Performing minimization step: 4398. Total energy = 4781.9213 kcal/mol (4778.3855 without restraints) Performing minimization step: 4399. Total energy = 4781.4596 kcal/mol (4777.9244 without restraints) Performing minimization step: 4400. Total energy = 4780.9978 kcal/mol (4777.4632 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 4780.5364 kcal/mol (4777.0026 without restraints) Performing minimization step: 4402. Total energy = 4780.0751 kcal/mol (4776.5421 without restraints) Performing minimization step: 4403. Total energy = 4779.6144 kcal/mol (4776.0821 without restraints) Performing minimization step: 4404. Total energy = 4779.1540 kcal/mol (4775.6223 without restraints) Performing minimization step: 4405. Total energy = 4778.6938 kcal/mol (4775.1628 without restraints) Performing minimization step: 4406. Total energy = 4778.2341 kcal/mol (4774.7039 without restraints) Performing minimization step: 4407. Total energy = 4777.7747 kcal/mol (4774.2452 without restraints) Performing minimization step: 4408. Total energy = 4777.3156 kcal/mol (4773.7868 without restraints) Performing minimization step: 4409. Total energy = 4776.8568 kcal/mol (4773.3288 without restraints) Performing minimization step: 4410. Total energy = 4776.3986 kcal/mol (4772.8712 without restraints) Performing minimization step: 4411. Total energy = 4775.9404 kcal/mol (4772.4138 without restraints) Performing minimization step: 4412. Total energy = 4775.4830 kcal/mol (4771.9571 without restraints) Performing minimization step: 4413. Total energy = 4775.0255 kcal/mol (4771.5003 without restraints) Performing minimization step: 4414. Total energy = 4774.5686 kcal/mol (4771.0441 without restraints) Performing minimization step: 4415. Total energy = 4774.1113 kcal/mol (4770.5877 without restraints) Performing minimization step: 4416. Total energy = 4773.6547 kcal/mol (4770.1317 without restraints) Performing minimization step: 4417. Total energy = 4773.1987 kcal/mol (4769.6764 without restraints) Performing minimization step: 4418. Total energy = 4772.7433 kcal/mol (4769.2217 without restraints) Performing minimization step: 4419. Total energy = 4772.2877 kcal/mol (4768.7668 without restraints) Performing minimization step: 4420. Total energy = 4771.8327 kcal/mol (4768.3126 without restraints) Performing minimization step: 4421. Total energy = 4771.3778 kcal/mol (4767.8583 without restraints) Performing minimization step: 4422. Total energy = 4770.9232 kcal/mol (4767.4046 without restraints) Performing minimization step: 4423. Total energy = 4770.4688 kcal/mol (4766.9508 without restraints) Performing minimization step: 4424. Total energy = 4770.0147 kcal/mol (4766.4974 without restraints) Performing minimization step: 4425. Total energy = 4769.5610 kcal/mol (4766.0444 without restraints) Performing minimization step: 4426. Total energy = 4769.1075 kcal/mol (4765.5917 without restraints) Performing minimization step: 4427. Total energy = 4768.6546 kcal/mol (4765.1395 without restraints) Performing minimization step: 4428. Total energy = 4768.2018 kcal/mol (4764.6874 without restraints) Performing minimization step: 4429. Total energy = 4767.7497 kcal/mol (4764.2361 without restraints) Performing minimization step: 4430. Total energy = 4767.2980 kcal/mol (4763.7851 without restraints) Performing minimization step: 4431. Total energy = 4766.8467 kcal/mol (4763.3343 without restraints) Performing minimization step: 4432. Total energy = 4766.3955 kcal/mol (4762.8842 without restraints) Performing minimization step: 4433. Total energy = 4765.9446 kcal/mol (4762.4337 without restraints) Performing minimization step: 4434. Total energy = 4765.4948 kcal/mol (4761.9848 without restraints) Performing minimization step: 4435. Total energy = 4765.0441 kcal/mol (4761.5347 without restraints) Performing minimization step: 4436. Total energy = 4764.5939 kcal/mol (4761.0851 without restraints) Performing minimization step: 4437. Total energy = 4764.1440 kcal/mol (4760.6361 without restraints) Performing minimization step: 4438. Total energy = 4763.6947 kcal/mol (4760.1873 without restraints) Performing minimization step: 4439. Total energy = 4763.2450 kcal/mol (4759.7384 without restraints) Performing minimization step: 4440. Total energy = 4762.7960 kcal/mol (4759.2901 without restraints) Performing minimization step: 4441. Total energy = 4762.3473 kcal/mol (4758.8421 without restraints) Performing minimization step: 4442. Total energy = 4761.8989 kcal/mol (4758.3945 without restraints) Performing minimization step: 4443. Total energy = 4761.4507 kcal/mol (4757.9470 without restraints) Performing minimization step: 4444. Total energy = 4761.0030 kcal/mol (4757.5001 without restraints) Performing minimization step: 4445. Total energy = 4760.5558 kcal/mol (4757.0536 without restraints) Performing minimization step: 4446. Total energy = 4760.1088 kcal/mol (4756.6072 without restraints) Performing minimization step: 4447. Total energy = 4759.6621 kcal/mol (4756.1613 without restraints) Performing minimization step: 4448. Total energy = 4759.2163 kcal/mol (4755.7161 without restraints) Performing minimization step: 4449. Total energy = 4758.7698 kcal/mol (4755.2703 without restraints) Performing minimization step: 4450. Total energy = 4758.3236 kcal/mol (4754.8248 without restraints) Performing minimization step: 4451. Total energy = 4757.8780 kcal/mol (4754.3799 without restraints) Performing minimization step: 4452. Total energy = 4757.4328 kcal/mol (4753.9355 without restraints) Performing minimization step: 4453. Total energy = 4756.9882 kcal/mol (4753.4916 without restraints) Performing minimization step: 4454. Total energy = 4756.5434 kcal/mol (4753.0474 without restraints) Performing minimization step: 4455. Total energy = 4756.0990 kcal/mol (4752.6038 without restraints) Performing minimization step: 4456. Total energy = 4755.6549 kcal/mol (4752.1604 without restraints) Performing minimization step: 4457. Total energy = 4755.2115 kcal/mol (4751.7177 without restraints) Performing minimization step: 4458. Total energy = 4754.7682 kcal/mol (4751.2751 without restraints) Performing minimization step: 4459. Total energy = 4754.3253 kcal/mol (4750.8329 without restraints) Performing minimization step: 4460. Total energy = 4753.8824 kcal/mol (4750.3907 without restraints) Performing minimization step: 4461. Total energy = 4753.4398 kcal/mol (4749.9488 without restraints) Performing minimization step: 4462. Total energy = 4752.9979 kcal/mol (4749.5076 without restraints) Performing minimization step: 4463. Total energy = 4752.5559 kcal/mol (4749.0663 without restraints) Performing minimization step: 4464. Total energy = 4752.1145 kcal/mol (4748.6257 without restraints) Performing minimization step: 4465. Total energy = 4751.6732 kcal/mol (4748.1851 without restraints) Performing minimization step: 4466. Total energy = 4751.2322 kcal/mol (4747.7447 without restraints) Performing minimization step: 4467. Total energy = 4750.7915 kcal/mol (4747.3047 without restraints) Performing minimization step: 4468. Total energy = 4750.3510 kcal/mol (4746.8650 without restraints) Performing minimization step: 4469. Total energy = 4749.9109 kcal/mol (4746.4255 without restraints) Performing minimization step: 4470. Total energy = 4749.4712 kcal/mol (4745.9866 without restraints) Performing minimization step: 4471. Total energy = 4749.0315 kcal/mol (4745.5477 without restraints) Performing minimization step: 4472. Total energy = 4748.5925 kcal/mol (4745.1093 without restraints) Performing minimization step: 4473. Total energy = 4748.1535 kcal/mol (4744.6710 without restraints) Performing minimization step: 4474. Total energy = 4747.7150 kcal/mol (4744.2331 without restraints) Performing minimization step: 4475. Total energy = 4747.2766 kcal/mol (4743.7955 without restraints) Performing minimization step: 4476. Total energy = 4746.8388 kcal/mol (4743.3584 without restraints) Performing minimization step: 4477. Total energy = 4746.4012 kcal/mol (4742.9215 without restraints) Performing minimization step: 4478. Total energy = 4745.9638 kcal/mol (4742.4848 without restraints) Performing minimization step: 4479. Total energy = 4745.5267 kcal/mol (4742.0484 without restraints) Performing minimization step: 4480. Total energy = 4745.0900 kcal/mol (4741.6124 without restraints) Performing minimization step: 4481. Total energy = 4744.6535 kcal/mol (4741.1766 without restraints) Performing minimization step: 4482. Total energy = 4744.2171 kcal/mol (4740.7409 without restraints) Performing minimization step: 4483. Total energy = 4743.7808 kcal/mol (4740.3052 without restraints) Performing minimization step: 4484. Total energy = 4743.3452 kcal/mol (4739.8704 without restraints) Performing minimization step: 4485. Total energy = 4742.9101 kcal/mol (4739.4361 without restraints) Performing minimization step: 4486. Total energy = 4742.4749 kcal/mol (4739.0016 without restraints) Performing minimization step: 4487. Total energy = 4742.0404 kcal/mol (4738.5677 without restraints) Performing minimization step: 4488. Total energy = 4741.6054 kcal/mol (4738.1336 without restraints) Performing minimization step: 4489. Total energy = 4741.1714 kcal/mol (4737.7001 without restraints) Performing minimization step: 4490. Total energy = 4740.7373 kcal/mol (4737.2668 without restraints) Performing minimization step: 4491. Total energy = 4740.3034 kcal/mol (4736.8335 without restraints) Performing minimization step: 4492. Total energy = 4739.8705 kcal/mol (4736.4013 without restraints) Performing minimization step: 4493. Total energy = 4739.4377 kcal/mol (4735.9693 without restraints) Performing minimization step: 4494. Total energy = 4739.0051 kcal/mol (4735.5373 without restraints) Performing minimization step: 4495. Total energy = 4738.5728 kcal/mol (4735.1057 without restraints) Performing minimization step: 4496. Total energy = 4738.1412 kcal/mol (4734.6749 without restraints) Performing minimization step: 4497. Total energy = 4737.7097 kcal/mol (4734.2441 without restraints) Performing minimization step: 4498. Total energy = 4737.2784 kcal/mol (4733.8136 without restraints) Performing minimization step: 4499. Total energy = 4736.8476 kcal/mol (4733.3833 without restraints) Performing minimization step: 4500. Total energy = 4736.4170 kcal/mol (4732.9536 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 4735.9867 kcal/mol (4732.5239 without restraints) Performing minimization step: 4502. Total energy = 4735.5566 kcal/mol (4732.0945 without restraints) Performing minimization step: 4503. Total energy = 4735.1269 kcal/mol (4731.6655 without restraints) Performing minimization step: 4504. Total energy = 4734.6973 kcal/mol (4731.2366 without restraints) Performing minimization step: 4505. Total energy = 4734.2681 kcal/mol (4730.8080 without restraints) Performing minimization step: 4506. Total energy = 4733.8393 kcal/mol (4730.3800 without restraints) Performing minimization step: 4507. Total energy = 4733.4106 kcal/mol (4729.9518 without restraints) Performing minimization step: 4508. Total energy = 4732.9820 kcal/mol (4729.5241 without restraints) Performing minimization step: 4509. Total energy = 4732.5536 kcal/mol (4729.0964 without restraints) Performing minimization step: 4510. Total energy = 4732.1256 kcal/mol (4728.6691 without restraints) Performing minimization step: 4511. Total energy = 4731.6980 kcal/mol (4728.2421 without restraints) Performing minimization step: 4512. Total energy = 4731.2708 kcal/mol (4727.8157 without restraints) Performing minimization step: 4513. Total energy = 4730.8437 kcal/mol (4727.3893 without restraints) Performing minimization step: 4514. Total energy = 4730.4170 kcal/mol (4726.9633 without restraints) Performing minimization step: 4515. Total energy = 4729.9907 kcal/mol (4726.5377 without restraints) Performing minimization step: 4516. Total energy = 4729.5646 kcal/mol (4726.1123 without restraints) Performing minimization step: 4517. Total energy = 4729.1389 kcal/mol (4725.6873 without restraints) Performing minimization step: 4518. Total energy = 4728.7134 kcal/mol (4725.2624 without restraints) Performing minimization step: 4519. Total energy = 4728.2883 kcal/mol (4724.8380 without restraints) Performing minimization step: 4520. Total energy = 4727.8637 kcal/mol (4724.4142 without restraints) Performing minimization step: 4521. Total energy = 4727.4392 kcal/mol (4723.9903 without restraints) Performing minimization step: 4522. Total energy = 4727.0151 kcal/mol (4723.5669 without restraints) Performing minimization step: 4523. Total energy = 4726.5909 kcal/mol (4723.1434 without restraints) Performing minimization step: 4524. Total energy = 4726.1672 kcal/mol (4722.7204 without restraints) Performing minimization step: 4525. Total energy = 4725.7438 kcal/mol (4722.2977 without restraints) Performing minimization step: 4526. Total energy = 4725.3205 kcal/mol (4721.8751 without restraints) Performing minimization step: 4527. Total energy = 4724.8975 kcal/mol (4721.4528 without restraints) Performing minimization step: 4528. Total energy = 4724.4747 kcal/mol (4721.0308 without restraints) Performing minimization step: 4529. Total energy = 4724.0523 kcal/mol (4720.6090 without restraints) Performing minimization step: 4530. Total energy = 4723.6306 kcal/mol (4720.1880 without restraints) Performing minimization step: 4531. Total energy = 4723.2087 kcal/mol (4719.7669 without restraints) Performing minimization step: 4532. Total energy = 4722.7874 kcal/mol (4719.3462 without restraints) Performing minimization step: 4533. Total energy = 4722.3658 kcal/mol (4718.9254 without restraints) Performing minimization step: 4534. Total energy = 4721.9446 kcal/mol (4718.5049 without restraints) Performing minimization step: 4535. Total energy = 4721.5241 kcal/mol (4718.0851 without restraints) Performing minimization step: 4536. Total energy = 4721.1038 kcal/mol (4717.6655 without restraints) Performing minimization step: 4537. Total energy = 4720.6838 kcal/mol (4717.2461 without restraints) Performing minimization step: 4538. Total energy = 4720.2637 kcal/mol (4716.8266 without restraints) Performing minimization step: 4539. Total energy = 4719.8439 kcal/mol (4716.4075 without restraints) Performing minimization step: 4540. Total energy = 4719.4249 kcal/mol (4715.9893 without restraints) Performing minimization step: 4541. Total energy = 4719.0061 kcal/mol (4715.5712 without restraints) Performing minimization step: 4542. Total energy = 4718.5874 kcal/mol (4715.1532 without restraints) Performing minimization step: 4543. Total energy = 4718.1690 kcal/mol (4714.7355 without restraints) Performing minimization step: 4544. Total energy = 4717.7515 kcal/mol (4714.3187 without restraints) Performing minimization step: 4545. Total energy = 4717.3336 kcal/mol (4713.9015 without restraints) Performing minimization step: 4546. Total energy = 4716.9160 kcal/mol (4713.4846 without restraints) Performing minimization step: 4547. Total energy = 4716.4988 kcal/mol (4713.0680 without restraints) Performing minimization step: 4548. Total energy = 4716.0820 kcal/mol (4712.6521 without restraints) Performing minimization step: 4549. Total energy = 4715.6654 kcal/mol (4712.2364 without restraints) Performing minimization step: 4550. Total energy = 4715.2493 kcal/mol (4711.8206 without restraints) Performing minimization step: 4551. Total energy = 4714.8332 kcal/mol (4711.4052 without restraints) Performing minimization step: 4552. Total energy = 4714.4173 kcal/mol (4710.9900 without restraints) Performing minimization step: 4553. Total energy = 4714.0019 kcal/mol (4710.5753 without restraints) Performing minimization step: 4554. Total energy = 4713.5865 kcal/mol (4710.1606 without restraints) Performing minimization step: 4555. Total energy = 4713.1718 kcal/mol (4709.7467 without restraints) Performing minimization step: 4556. Total energy = 4712.7572 kcal/mol (4709.3327 without restraints) Performing minimization step: 4557. Total energy = 4712.3428 kcal/mol (4708.9191 without restraints) Performing minimization step: 4558. Total energy = 4711.9288 kcal/mol (4708.5058 without restraints) Performing minimization step: 4559. Total energy = 4711.5150 kcal/mol (4708.0926 without restraints) Performing minimization step: 4560. Total energy = 4711.1013 kcal/mol (4707.6795 without restraints) Performing minimization step: 4561. Total energy = 4710.6879 kcal/mol (4707.2669 without restraints) Performing minimization step: 4562. Total energy = 4710.2747 kcal/mol (4706.8544 without restraints) Performing minimization step: 4563. Total energy = 4709.8627 kcal/mol (4706.4431 without restraints) Performing minimization step: 4564. Total energy = 4709.4501 kcal/mol (4706.0312 without restraints) Performing minimization step: 4565. Total energy = 4709.0379 kcal/mol (4705.6197 without restraints) Performing minimization step: 4566. Total energy = 4708.6262 kcal/mol (4705.2087 without restraints) Performing minimization step: 4567. Total energy = 4708.2146 kcal/mol (4704.7978 without restraints) Performing minimization step: 4568. Total energy = 4707.8032 kcal/mol (4704.3871 without restraints) Performing minimization step: 4569. Total energy = 4707.3925 kcal/mol (4703.9773 without restraints) Performing minimization step: 4570. Total energy = 4706.9819 kcal/mol (4703.5672 without restraints) Performing minimization step: 4571. Total energy = 4706.5717 kcal/mol (4703.1577 without restraints) Performing minimization step: 4572. Total energy = 4706.1613 kcal/mol (4702.7480 without restraints) Performing minimization step: 4573. Total energy = 4705.7517 kcal/mol (4702.3391 without restraints) Performing minimization step: 4574. Total energy = 4705.3418 kcal/mol (4701.9299 without restraints) Performing minimization step: 4575. Total energy = 4704.9326 kcal/mol (4701.5213 without restraints) Performing minimization step: 4576. Total energy = 4704.5236 kcal/mol (4701.1130 without restraints) Performing minimization step: 4577. Total energy = 4704.1144 kcal/mol (4700.7046 without restraints) Performing minimization step: 4578. Total energy = 4703.7058 kcal/mol (4700.2966 without restraints) Performing minimization step: 4579. Total energy = 4703.2976 kcal/mol (4699.8891 without restraints) Performing minimization step: 4580. Total energy = 4702.8898 kcal/mol (4699.4820 without restraints) Performing minimization step: 4581. Total energy = 4702.4820 kcal/mol (4699.0749 without restraints) Performing minimization step: 4582. Total energy = 4702.0746 kcal/mol (4698.6682 without restraints) Performing minimization step: 4583. Total energy = 4701.6680 kcal/mol (4698.2623 without restraints) Performing minimization step: 4584. Total energy = 4701.2613 kcal/mol (4697.8563 without restraints) Performing minimization step: 4585. Total energy = 4700.8549 kcal/mol (4697.4506 without restraints) Performing minimization step: 4586. Total energy = 4700.4485 kcal/mol (4697.0448 without restraints) Performing minimization step: 4587. Total energy = 4700.0422 kcal/mol (4696.6393 without restraints) Performing minimization step: 4588. Total energy = 4699.6363 kcal/mol (4696.2341 without restraints) Performing minimization step: 4589. Total energy = 4699.2306 kcal/mol (4695.8290 without restraints) Performing minimization step: 4590. Total energy = 4698.8250 kcal/mol (4695.4242 without restraints) Performing minimization step: 4591. Total energy = 4698.4202 kcal/mol (4695.0203 without restraints) Performing minimization step: 4592. Total energy = 4698.0159 kcal/mol (4694.6164 without restraints) Performing minimization step: 4593. Total energy = 4697.6120 kcal/mol (4694.2132 without restraints) Performing minimization step: 4594. Total energy = 4697.2082 kcal/mol (4693.8101 without restraints) Performing minimization step: 4595. Total energy = 4696.8041 kcal/mol (4693.4067 without restraints) Performing minimization step: 4596. Total energy = 4696.4008 kcal/mol (4693.0044 without restraints) Performing minimization step: 4597. Total energy = 4695.9976 kcal/mol (4692.6016 without restraints) Performing minimization step: 4598. Total energy = 4695.5945 kcal/mol (4692.1993 without restraints) Performing minimization step: 4599. Total energy = 4695.1925 kcal/mol (4691.7979 without restraints) Performing minimization step: 4600. Total energy = 4694.7899 kcal/mol (4691.3963 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 4694.3878 kcal/mol (4690.9946 without restraints) Performing minimization step: 4602. Total energy = 4693.9859 kcal/mol (4690.5934 without restraints) Performing minimization step: 4603. Total energy = 4693.5842 kcal/mol (4690.1924 without restraints) Performing minimization step: 4604. Total energy = 4693.1830 kcal/mol (4689.7920 without restraints) Performing minimization step: 4605. Total energy = 4692.7825 kcal/mol (4689.3920 without restraints) Performing minimization step: 4606. Total energy = 4692.3818 kcal/mol (4688.9920 without restraints) Performing minimization step: 4607. Total energy = 4691.9813 kcal/mol (4688.5922 without restraints) Performing minimization step: 4608. Total energy = 4691.5809 kcal/mol (4688.1925 without restraints) Performing minimization step: 4609. Total energy = 4691.1807 kcal/mol (4687.7930 without restraints) Performing minimization step: 4610. Total energy = 4690.7812 kcal/mol (4687.3941 without restraints) Performing minimization step: 4611. Total energy = 4690.3818 kcal/mol (4686.9954 without restraints) Performing minimization step: 4612. Total energy = 4689.9827 kcal/mol (4686.5971 without restraints) Performing minimization step: 4613. Total energy = 4689.5838 kcal/mol (4686.1989 without restraints) Performing minimization step: 4614. Total energy = 4689.1852 kcal/mol (4685.8009 without restraints) Performing minimization step: 4615. Total energy = 4688.7864 kcal/mol (4685.4028 without restraints) Performing minimization step: 4616. Total energy = 4688.3882 kcal/mol (4685.0053 without restraints) Performing minimization step: 4617. Total energy = 4687.9906 kcal/mol (4684.6085 without restraints) Performing minimization step: 4618. Total energy = 4687.5929 kcal/mol (4684.2114 without restraints) Performing minimization step: 4619. Total energy = 4687.1953 kcal/mol (4683.8145 without restraints) Performing minimization step: 4620. Total energy = 4686.7980 kcal/mol (4683.4179 without restraints) Performing minimization step: 4621. Total energy = 4686.4011 kcal/mol (4683.0216 without restraints) Performing minimization step: 4622. Total energy = 4686.0045 kcal/mol (4682.6258 without restraints) Performing minimization step: 4623. Total energy = 4685.6078 kcal/mol (4682.2298 without restraints) Performing minimization step: 4624. Total energy = 4685.2118 kcal/mol (4681.8346 without restraints) Performing minimization step: 4625. Total energy = 4684.8163 kcal/mol (4681.4396 without restraints) Performing minimization step: 4626. Total energy = 4684.4206 kcal/mol (4681.0446 without restraints) Performing minimization step: 4627. Total energy = 4684.0251 kcal/mol (4680.6498 without restraints) Performing minimization step: 4628. Total energy = 4683.6300 kcal/mol (4680.2555 without restraints) Performing minimization step: 4629. Total energy = 4683.2354 kcal/mol (4679.8615 without restraints) Performing minimization step: 4630. Total energy = 4682.8408 kcal/mol (4679.4676 without restraints) Performing minimization step: 4631. Total energy = 4682.4464 kcal/mol (4679.0739 without restraints) Performing minimization step: 4632. Total energy = 4682.0525 kcal/mol (4678.6807 without restraints) Performing minimization step: 4633. Total energy = 4681.6588 kcal/mol (4678.2877 without restraints) Performing minimization step: 4634. Total energy = 4681.2651 kcal/mol (4677.8945 without restraints) Performing minimization step: 4635. Total energy = 4680.8715 kcal/mol (4677.5016 without restraints) Performing minimization step: 4636. Total energy = 4680.4790 kcal/mol (4677.1101 without restraints) Performing minimization step: 4637. Total energy = 4680.0868 kcal/mol (4676.7185 without restraints) Performing minimization step: 4638. Total energy = 4679.6941 kcal/mol (4676.3264 without restraints) Performing minimization step: 4639. Total energy = 4679.3018 kcal/mol (4675.9348 without restraints) Performing minimization step: 4640. Total energy = 4678.9097 kcal/mol (4675.5434 without restraints) Performing minimization step: 4641. Total energy = 4678.5179 kcal/mol (4675.1523 without restraints) Performing minimization step: 4642. Total energy = 4678.1267 kcal/mol (4674.7618 without restraints) Performing minimization step: 4643. Total energy = 4677.7359 kcal/mol (4674.3718 without restraints) Performing minimization step: 4644. Total energy = 4677.3450 kcal/mol (4673.9815 without restraints) Performing minimization step: 4645. Total energy = 4676.9548 kcal/mol (4673.5920 without restraints) Performing minimization step: 4646. Total energy = 4676.5644 kcal/mol (4673.2022 without restraints) Performing minimization step: 4647. Total energy = 4676.1742 kcal/mol (4672.8127 without restraints) Performing minimization step: 4648. Total energy = 4675.7843 kcal/mol (4672.4235 without restraints) Performing minimization step: 4649. Total energy = 4675.3941 kcal/mol (4672.0341 without restraints) Performing minimization step: 4650. Total energy = 4675.0049 kcal/mol (4671.6456 without restraints) Performing minimization step: 4651. Total energy = 4674.6160 kcal/mol (4671.2574 without restraints) Performing minimization step: 4652. Total energy = 4674.2272 kcal/mol (4670.8692 without restraints) Performing minimization step: 4653. Total energy = 4673.8382 kcal/mol (4670.4809 without restraints) Performing minimization step: 4654. Total energy = 4673.4499 kcal/mol (4670.0933 without restraints) Performing minimization step: 4655. Total energy = 4673.0617 kcal/mol (4669.7058 without restraints) Performing minimization step: 4656. Total energy = 4672.6738 kcal/mol (4669.3186 without restraints) Performing minimization step: 4657. Total energy = 4672.2862 kcal/mol (4668.9317 without restraints) Performing minimization step: 4658. Total energy = 4671.8997 kcal/mol (4668.5462 without restraints) Performing minimization step: 4659. Total energy = 4671.5127 kcal/mol (4668.1596 without restraints) Performing minimization step: 4660. Total energy = 4671.1259 kcal/mol (4667.7734 without restraints) Performing minimization step: 4661. Total energy = 4670.7396 kcal/mol (4667.3881 without restraints) Performing minimization step: 4662. Total energy = 4670.3535 kcal/mol (4667.0024 without restraints) Performing minimization step: 4663. Total energy = 4669.9674 kcal/mol (4666.6170 without restraints) Performing minimization step: 4664. Total energy = 4669.5819 kcal/mol (4666.2323 without restraints) Performing minimization step: 4665. Total energy = 4669.1967 kcal/mol (4665.8477 without restraints) Performing minimization step: 4666. Total energy = 4668.8114 kcal/mol (4665.4631 without restraints) Performing minimization step: 4667. Total energy = 4668.4266 kcal/mol (4665.0790 without restraints) Performing minimization step: 4668. Total energy = 4668.0420 kcal/mol (4664.6951 without restraints) Performing minimization step: 4669. Total energy = 4667.6578 kcal/mol (4664.3115 without restraints) Performing minimization step: 4670. Total energy = 4667.2736 kcal/mol (4663.9282 without restraints) Performing minimization step: 4671. Total energy = 4666.8901 kcal/mol (4663.5453 without restraints) Performing minimization step: 4672. Total energy = 4666.5066 kcal/mol (4663.1625 without restraints) Performing minimization step: 4673. Total energy = 4666.1229 kcal/mol (4662.7794 without restraints) Performing minimization step: 4674. Total energy = 4665.7397 kcal/mol (4662.3969 without restraints) Performing minimization step: 4675. Total energy = 4665.3568 kcal/mol (4662.0147 without restraints) Performing minimization step: 4676. Total energy = 4664.9744 kcal/mol (4661.6332 without restraints) Performing minimization step: 4677. Total energy = 4664.5921 kcal/mol (4661.2514 without restraints) Performing minimization step: 4678. Total energy = 4664.2103 kcal/mol (4660.8704 without restraints) Performing minimization step: 4679. Total energy = 4663.8286 kcal/mol (4660.4893 without restraints) Performing minimization step: 4680. Total energy = 4663.4468 kcal/mol (4660.1083 without restraints) Performing minimization step: 4681. Total energy = 4663.0653 kcal/mol (4659.7273 without restraints) Performing minimization step: 4682. Total energy = 4662.6840 kcal/mol (4659.3467 without restraints) Performing minimization step: 4683. Total energy = 4662.3032 kcal/mol (4658.9666 without restraints) Performing minimization step: 4684. Total energy = 4661.9232 kcal/mol (4658.5873 without restraints) Performing minimization step: 4685. Total energy = 4661.5430 kcal/mol (4658.2078 without restraints) Performing minimization step: 4686. Total energy = 4661.1626 kcal/mol (4657.8281 without restraints) Performing minimization step: 4687. Total energy = 4660.7825 kcal/mol (4657.4487 without restraints) Performing minimization step: 4688. Total energy = 4660.4026 kcal/mol (4657.0695 without restraints) Performing minimization step: 4689. Total energy = 4660.0231 kcal/mol (4656.6907 without restraints) Performing minimization step: 4690. Total energy = 4659.6440 kcal/mol (4656.3124 without restraints) Performing minimization step: 4691. Total energy = 4659.2652 kcal/mol (4655.9342 without restraints) Performing minimization step: 4692. Total energy = 4658.8865 kcal/mol (4655.5562 without restraints) Performing minimization step: 4693. Total energy = 4658.5082 kcal/mol (4655.1785 without restraints) Performing minimization step: 4694. Total energy = 4658.1300 kcal/mol (4654.8010 without restraints) Performing minimization step: 4695. Total energy = 4657.7521 kcal/mol (4654.4239 without restraints) Performing minimization step: 4696. Total energy = 4657.3744 kcal/mol (4654.0468 without restraints) Performing minimization step: 4697. Total energy = 4656.9972 kcal/mol (4653.6703 without restraints) Performing minimization step: 4698. Total energy = 4656.6196 kcal/mol (4653.2934 without restraints) Performing minimization step: 4699. Total energy = 4656.2429 kcal/mol (4652.9174 without restraints) Performing minimization step: 4700. Total energy = 4655.8661 kcal/mol (4652.5413 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 4655.4898 kcal/mol (4652.1656 without restraints) Performing minimization step: 4702. Total energy = 4655.1140 kcal/mol (4651.7909 without restraints) Performing minimization step: 4703. Total energy = 4654.7387 kcal/mol (4651.4160 without restraints) Performing minimization step: 4704. Total energy = 4654.3630 kcal/mol (4651.0409 without restraints) Performing minimization step: 4705. Total energy = 4653.9877 kcal/mol (4650.6665 without restraints) Performing minimization step: 4706. Total energy = 4653.6126 kcal/mol (4650.2920 without restraints) Performing minimization step: 4707. Total energy = 4653.2376 kcal/mol (4649.9177 without restraints) Performing minimization step: 4708. Total energy = 4652.8628 kcal/mol (4649.5435 without restraints) Performing minimization step: 4709. Total energy = 4652.4891 kcal/mol (4649.1705 without restraints) Performing minimization step: 4710. Total energy = 4652.1150 kcal/mol (4648.7971 without restraints) Performing minimization step: 4711. Total energy = 4651.7415 kcal/mol (4648.4243 without restraints) Performing minimization step: 4712. Total energy = 4651.3676 kcal/mol (4648.0511 without restraints) Performing minimization step: 4713. Total energy = 4650.9943 kcal/mol (4647.6784 without restraints) Performing minimization step: 4714. Total energy = 4650.6212 kcal/mol (4647.3061 without restraints) Performing minimization step: 4715. Total energy = 4650.2483 kcal/mol (4646.9339 without restraints) Performing minimization step: 4716. Total energy = 4649.8755 kcal/mol (4646.5618 without restraints) Performing minimization step: 4717. Total energy = 4649.5030 kcal/mol (4646.1899 without restraints) Performing minimization step: 4718. Total energy = 4649.1308 kcal/mol (4645.8184 without restraints) Performing minimization step: 4719. Total energy = 4648.7587 kcal/mol (4645.4472 without restraints) Performing minimization step: 4720. Total energy = 4648.3869 kcal/mol (4645.0760 without restraints) Performing minimization step: 4721. Total energy = 4648.0155 kcal/mol (4644.7053 without restraints) Performing minimization step: 4722. Total energy = 4647.6443 kcal/mol (4644.3347 without restraints) Performing minimization step: 4723. Total energy = 4647.2734 kcal/mol (4643.9645 without restraints) Performing minimization step: 4724. Total energy = 4646.9028 kcal/mol (4643.5946 without restraints) Performing minimization step: 4725. Total energy = 4646.5321 kcal/mol (4643.2246 without restraints) Performing minimization step: 4726. Total energy = 4646.1619 kcal/mol (4642.8552 without restraints) Performing minimization step: 4727. Total energy = 4645.7921 kcal/mol (4642.4859 without restraints) Performing minimization step: 4728. Total energy = 4645.4221 kcal/mol (4642.1167 without restraints) Performing minimization step: 4729. Total energy = 4645.0523 kcal/mol (4641.7477 without restraints) Performing minimization step: 4730. Total energy = 4644.6833 kcal/mol (4641.3793 without restraints) Performing minimization step: 4731. Total energy = 4644.3140 kcal/mol (4641.0106 without restraints) Performing minimization step: 4732. Total energy = 4643.9454 kcal/mol (4640.6428 without restraints) Performing minimization step: 4733. Total energy = 4643.5764 kcal/mol (4640.2745 without restraints) Performing minimization step: 4734. Total energy = 4643.2080 kcal/mol (4639.9068 without restraints) Performing minimization step: 4735. Total energy = 4642.8399 kcal/mol (4639.5392 without restraints) Performing minimization step: 4736. Total energy = 4642.4723 kcal/mol (4639.1724 without restraints) Performing minimization step: 4737. Total energy = 4642.1046 kcal/mol (4638.8056 without restraints) Performing minimization step: 4738. Total energy = 4641.7378 kcal/mol (4638.4397 without restraints) Performing minimization step: 4739. Total energy = 4641.3716 kcal/mol (4638.0738 without restraints) Performing minimization step: 4740. Total energy = 4641.0046 kcal/mol (4637.7075 without restraints) Performing minimization step: 4741. Total energy = 4640.6382 kcal/mol (4637.3418 without restraints) Performing minimization step: 4742. Total energy = 4640.2718 kcal/mol (4636.9761 without restraints) Performing minimization step: 4743. Total energy = 4639.9055 kcal/mol (4636.6105 without restraints) Performing minimization step: 4744. Total energy = 4639.5396 kcal/mol (4636.2454 without restraints) Performing minimization step: 4745. Total energy = 4639.1739 kcal/mol (4635.8803 without restraints) Performing minimization step: 4746. Total energy = 4638.8083 kcal/mol (4635.5154 without restraints) Performing minimization step: 4747. Total energy = 4638.4431 kcal/mol (4635.1509 without restraints) Performing minimization step: 4748. Total energy = 4638.0783 kcal/mol (4634.7868 without restraints) Performing minimization step: 4749. Total energy = 4637.7134 kcal/mol (4634.4226 without restraints) Performing minimization step: 4750. Total energy = 4637.3488 kcal/mol (4634.0587 without restraints) Performing minimization step: 4751. Total energy = 4636.9844 kcal/mol (4633.6950 without restraints) Performing minimization step: 4752. Total energy = 4636.6204 kcal/mol (4633.3317 without restraints) Performing minimization step: 4753. Total energy = 4636.2565 kcal/mol (4632.9684 without restraints) Performing minimization step: 4754. Total energy = 4635.8928 kcal/mol (4632.6055 without restraints) Performing minimization step: 4755. Total energy = 4635.5294 kcal/mol (4632.2427 without restraints) Performing minimization step: 4756. Total energy = 4635.1668 kcal/mol (4631.8808 without restraints) Performing minimization step: 4757. Total energy = 4634.8038 kcal/mol (4631.5186 without restraints) Performing minimization step: 4758. Total energy = 4634.4413 kcal/mol (4631.1567 without restraints) Performing minimization step: 4759. Total energy = 4634.0788 kcal/mol (4630.7949 without restraints) Performing minimization step: 4760. Total energy = 4633.7165 kcal/mol (4630.4333 without restraints) Performing minimization step: 4761. Total energy = 4633.3545 kcal/mol (4630.0720 without restraints) Performing minimization step: 4762. Total energy = 4632.9927 kcal/mol (4629.7109 without restraints) Performing minimization step: 4763. Total energy = 4632.6311 kcal/mol (4629.3500 without restraints) Performing minimization step: 4764. Total energy = 4632.2693 kcal/mol (4628.9890 without restraints) Performing minimization step: 4765. Total energy = 4631.9087 kcal/mol (4628.6291 without restraints) Performing minimization step: 4766. Total energy = 4631.5480 kcal/mol (4628.2690 without restraints) Performing minimization step: 4767. Total energy = 4631.1875 kcal/mol (4627.9092 without restraints) Performing minimization step: 4768. Total energy = 4630.8270 kcal/mol (4627.5493 without restraints) Performing minimization step: 4769. Total energy = 4630.4669 kcal/mol (4627.1900 without restraints) Performing minimization step: 4770. Total energy = 4630.1069 kcal/mol (4626.8307 without restraints) Performing minimization step: 4771. Total energy = 4629.7473 kcal/mol (4626.4719 without restraints) Performing minimization step: 4772. Total energy = 4629.3882 kcal/mol (4626.1134 without restraints) Performing minimization step: 4773. Total energy = 4629.0296 kcal/mol (4625.7555 without restraints) Performing minimization step: 4774. Total energy = 4628.6710 kcal/mol (4625.3976 without restraints) Performing minimization step: 4775. Total energy = 4628.3122 kcal/mol (4625.0395 without restraints) Performing minimization step: 4776. Total energy = 4627.9539 kcal/mol (4624.6819 without restraints) Performing minimization step: 4777. Total energy = 4627.5958 kcal/mol (4624.3245 without restraints) Performing minimization step: 4778. Total energy = 4627.2380 kcal/mol (4623.9675 without restraints) Performing minimization step: 4779. Total energy = 4626.8805 kcal/mol (4623.6106 without restraints) Performing minimization step: 4780. Total energy = 4626.5230 kcal/mol (4623.2537 without restraints) Performing minimization step: 4781. Total energy = 4626.1658 kcal/mol (4622.8973 without restraints) Performing minimization step: 4782. Total energy = 4625.8087 kcal/mol (4622.5408 without restraints) Performing minimization step: 4783. Total energy = 4625.4518 kcal/mol (4622.1846 without restraints) Performing minimization step: 4784. Total energy = 4625.0955 kcal/mol (4621.8290 without restraints) Performing minimization step: 4785. Total energy = 4624.7390 kcal/mol (4621.4732 without restraints) Performing minimization step: 4786. Total energy = 4624.3828 kcal/mol (4621.1177 without restraints) Performing minimization step: 4787. Total energy = 4624.0271 kcal/mol (4620.7627 without restraints) Performing minimization step: 4788. Total energy = 4623.6712 kcal/mol (4620.4075 without restraints) Performing minimization step: 4789. Total energy = 4623.3157 kcal/mol (4620.0527 without restraints) Performing minimization step: 4790. Total energy = 4622.9605 kcal/mol (4619.6983 without restraints) Performing minimization step: 4791. Total energy = 4622.6053 kcal/mol (4619.3437 without restraints) Performing minimization step: 4792. Total energy = 4622.2503 kcal/mol (4618.9895 without restraints) Performing minimization step: 4793. Total energy = 4621.8960 kcal/mol (4618.6360 without restraints) Performing minimization step: 4794. Total energy = 4621.5423 kcal/mol (4618.2830 without restraints) Performing minimization step: 4795. Total energy = 4621.1887 kcal/mol (4617.9300 without restraints) Performing minimization step: 4796. Total energy = 4620.8348 kcal/mol (4617.5767 without restraints) Performing minimization step: 4797. Total energy = 4620.4810 kcal/mol (4617.2237 without restraints) Performing minimization step: 4798. Total energy = 4620.1282 kcal/mol (4616.8715 without restraints) Performing minimization step: 4799. Total energy = 4619.7749 kcal/mol (4616.5190 without restraints) Performing minimization step: 4800. Total energy = 4619.4220 kcal/mol (4616.1667 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 4619.0696 kcal/mol (4615.8150 without restraints) Performing minimization step: 4802. Total energy = 4618.7172 kcal/mol (4615.4634 without restraints) Performing minimization step: 4803. Total energy = 4618.3648 kcal/mol (4615.1117 without restraints) Performing minimization step: 4804. Total energy = 4618.0136 kcal/mol (4614.7611 without restraints) Performing minimization step: 4805. Total energy = 4617.6612 kcal/mol (4614.4095 without restraints) Performing minimization step: 4806. Total energy = 4617.3095 kcal/mol (4614.0586 without restraints) Performing minimization step: 4807. Total energy = 4616.9579 kcal/mol (4613.7076 without restraints) Performing minimization step: 4808. Total energy = 4616.6065 kcal/mol (4613.3569 without restraints) Performing minimization step: 4809. Total energy = 4616.2562 kcal/mol (4613.0072 without restraints) Performing minimization step: 4810. Total energy = 4615.9056 kcal/mol (4612.6573 without restraints) Performing minimization step: 4811. Total energy = 4615.5552 kcal/mol (4612.3076 without restraints) Performing minimization step: 4812. Total energy = 4615.2050 kcal/mol (4611.9582 without restraints) Performing minimization step: 4813. Total energy = 4614.8548 kcal/mol (4611.6087 without restraints) Performing minimization step: 4814. Total energy = 4614.5053 kcal/mol (4611.2599 without restraints) Performing minimization step: 4815. Total energy = 4614.1563 kcal/mol (4610.9115 without restraints) Performing minimization step: 4816. Total energy = 4613.8071 kcal/mol (4610.5630 without restraints) Performing minimization step: 4817. Total energy = 4613.4579 kcal/mol (4610.2146 without restraints) Performing minimization step: 4818. Total energy = 4613.1091 kcal/mol (4609.8665 without restraints) Performing minimization step: 4819. Total energy = 4612.7604 kcal/mol (4609.5185 without restraints) Performing minimization step: 4820. Total energy = 4612.4119 kcal/mol (4609.1707 without restraints) Performing minimization step: 4821. Total energy = 4612.0637 kcal/mol (4608.8232 without restraints) Performing minimization step: 4822. Total energy = 4611.7158 kcal/mol (4608.4761 without restraints) Performing minimization step: 4823. Total energy = 4611.3681 kcal/mol (4608.1289 without restraints) Performing minimization step: 4824. Total energy = 4611.0206 kcal/mol (4607.7822 without restraints) Performing minimization step: 4825. Total energy = 4610.6735 kcal/mol (4607.4358 without restraints) Performing minimization step: 4826. Total energy = 4610.3263 kcal/mol (4607.0893 without restraints) Performing minimization step: 4827. Total energy = 4609.9793 kcal/mol (4606.7430 without restraints) Performing minimization step: 4828. Total energy = 4609.6327 kcal/mol (4606.3971 without restraints) Performing minimization step: 4829. Total energy = 4609.2864 kcal/mol (4606.0516 without restraints) Performing minimization step: 4830. Total energy = 4608.9400 kcal/mol (4605.7058 without restraints) Performing minimization step: 4831. Total energy = 4608.5944 kcal/mol (4605.3609 without restraints) Performing minimization step: 4832. Total energy = 4608.2486 kcal/mol (4605.0158 without restraints) Performing minimization step: 4833. Total energy = 4607.9028 kcal/mol (4604.6707 without restraints) Performing minimization step: 4834. Total energy = 4607.5575 kcal/mol (4604.3262 without restraints) Performing minimization step: 4835. Total energy = 4607.2127 kcal/mol (4603.9821 without restraints) Performing minimization step: 4836. Total energy = 4606.8676 kcal/mol (4603.6377 without restraints) Performing minimization step: 4837. Total energy = 4606.5229 kcal/mol (4603.2936 without restraints) Performing minimization step: 4838. Total energy = 4606.1786 kcal/mol (4602.9500 without restraints) Performing minimization step: 4839. Total energy = 4605.8344 kcal/mol (4602.6065 without restraints) Performing minimization step: 4840. Total energy = 4605.4905 kcal/mol (4602.2634 without restraints) Performing minimization step: 4841. Total energy = 4605.1467 kcal/mol (4601.9204 without restraints) Performing minimization step: 4842. Total energy = 4604.8032 kcal/mol (4601.5775 without restraints) Performing minimization step: 4843. Total energy = 4604.4598 kcal/mol (4601.2347 without restraints) Performing minimization step: 4844. Total energy = 4604.1166 kcal/mol (4600.8922 without restraints) Performing minimization step: 4845. Total energy = 4603.7736 kcal/mol (4600.5500 without restraints) Performing minimization step: 4846. Total energy = 4603.4307 kcal/mol (4600.2079 without restraints) Performing minimization step: 4847. Total energy = 4603.0884 kcal/mol (4599.8662 without restraints) Performing minimization step: 4848. Total energy = 4602.7454 kcal/mol (4599.5239 without restraints) Performing minimization step: 4849. Total energy = 4602.4032 kcal/mol (4599.1825 without restraints) Performing minimization step: 4850. Total energy = 4602.0616 kcal/mol (4598.8415 without restraints) Performing minimization step: 4851. Total energy = 4601.7199 kcal/mol (4598.5005 without restraints) Performing minimization step: 4852. Total energy = 4601.3788 kcal/mol (4598.1603 without restraints) Performing minimization step: 4853. Total energy = 4601.0378 kcal/mol (4597.8198 without restraints) Performing minimization step: 4854. Total energy = 4600.6968 kcal/mol (4597.4796 without restraints) Performing minimization step: 4855. Total energy = 4600.3562 kcal/mol (4597.1397 without restraints) Performing minimization step: 4856. Total energy = 4600.0157 kcal/mol (4596.7999 without restraints) Performing minimization step: 4857. Total energy = 4599.6758 kcal/mol (4596.4606 without restraints) Performing minimization step: 4858. Total energy = 4599.3356 kcal/mol (4596.1211 without restraints) Performing minimization step: 4859. Total energy = 4598.9958 kcal/mol (4595.7820 without restraints) Performing minimization step: 4860. Total energy = 4598.6559 kcal/mol (4595.4429 without restraints) Performing minimization step: 4861. Total energy = 4598.3167 kcal/mol (4595.1044 without restraints) Performing minimization step: 4862. Total energy = 4597.9778 kcal/mol (4594.7662 without restraints) Performing minimization step: 4863. Total energy = 4597.6387 kcal/mol (4594.4278 without restraints) Performing minimization step: 4864. Total energy = 4597.2998 kcal/mol (4594.0896 without restraints) Performing minimization step: 4865. Total energy = 4596.9606 kcal/mol (4593.7511 without restraints) Performing minimization step: 4866. Total energy = 4596.6221 kcal/mol (4593.4134 without restraints) Performing minimization step: 4867. Total energy = 4596.2837 kcal/mol (4593.0756 without restraints) Performing minimization step: 4868. Total energy = 4595.9458 kcal/mol (4592.7387 without restraints) Performing minimization step: 4869. Total energy = 4595.6082 kcal/mol (4592.4015 without restraints) Performing minimization step: 4870. Total energy = 4595.2710 kcal/mol (4592.0650 without restraints) Performing minimization step: 4871. Total energy = 4594.9338 kcal/mol (4591.7286 without restraints) Performing minimization step: 4872. Total energy = 4594.5968 kcal/mol (4591.3923 without restraints) Performing minimization step: 4873. Total energy = 4594.2598 kcal/mol (4591.0560 without restraints) Performing minimization step: 4874. Total energy = 4593.9234 kcal/mol (4590.7204 without restraints) Performing minimization step: 4875. Total energy = 4593.5871 kcal/mol (4590.3848 without restraints) Performing minimization step: 4876. Total energy = 4593.2508 kcal/mol (4590.0492 without restraints) Performing minimization step: 4877. Total energy = 4592.9149 kcal/mol (4589.7139 without restraints) Performing minimization step: 4878. Total energy = 4592.5790 kcal/mol (4589.3788 without restraints) Performing minimization step: 4879. Total energy = 4592.2439 kcal/mol (4589.0445 without restraints) Performing minimization step: 4880. Total energy = 4591.9085 kcal/mol (4588.7097 without restraints) Performing minimization step: 4881. Total energy = 4591.5733 kcal/mol (4588.3752 without restraints) Performing minimization step: 4882. Total energy = 4591.2383 kcal/mol (4588.0409 without restraints) Performing minimization step: 4883. Total energy = 4590.9038 kcal/mol (4587.7072 without restraints) Performing minimization step: 4884. Total energy = 4590.5693 kcal/mol (4587.3735 without restraints) Performing minimization step: 4885. Total energy = 4590.2350 kcal/mol (4587.0397 without restraints) Performing minimization step: 4886. Total energy = 4589.9006 kcal/mol (4586.7061 without restraints) Performing minimization step: 4887. Total energy = 4589.5666 kcal/mol (4586.3728 without restraints) Performing minimization step: 4888. Total energy = 4589.2331 kcal/mol (4586.0400 without restraints) Performing minimization step: 4889. Total energy = 4588.8998 kcal/mol (4585.7074 without restraints) Performing minimization step: 4890. Total energy = 4588.5672 kcal/mol (4585.3755 without restraints) Performing minimization step: 4891. Total energy = 4588.2339 kcal/mol (4585.0430 without restraints) Performing minimization step: 4892. Total energy = 4587.9010 kcal/mol (4584.7109 without restraints) Performing minimization step: 4893. Total energy = 4587.5686 kcal/mol (4584.3791 without restraints) Performing minimization step: 4894. Total energy = 4587.2367 kcal/mol (4584.0479 without restraints) Performing minimization step: 4895. Total energy = 4586.9045 kcal/mol (4583.7164 without restraints) Performing minimization step: 4896. Total energy = 4586.5727 kcal/mol (4583.3853 without restraints) Performing minimization step: 4897. Total energy = 4586.2408 kcal/mol (4583.0541 without restraints) Performing minimization step: 4898. Total energy = 4585.9096 kcal/mol (4582.7238 without restraints) Performing minimization step: 4899. Total energy = 4585.5788 kcal/mol (4582.3935 without restraints) Performing minimization step: 4900. Total energy = 4585.2479 kcal/mol (4582.0634 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 4584.9169 kcal/mol (4581.7331 without restraints) Performing minimization step: 4902. Total energy = 4584.5861 kcal/mol (4581.4030 without restraints) Performing minimization step: 4903. Total energy = 4584.2555 kcal/mol (4581.0731 without restraints) Performing minimization step: 4904. Total energy = 4583.9255 kcal/mol (4580.7438 without restraints) Performing minimization step: 4905. Total energy = 4583.5953 kcal/mol (4580.4143 without restraints) Performing minimization step: 4906. Total energy = 4583.2653 kcal/mol (4580.0849 without restraints) Performing minimization step: 4907. Total energy = 4582.9351 kcal/mol (4579.7556 without restraints) Performing minimization step: 4908. Total energy = 4582.6059 kcal/mol (4579.4272 without restraints) Performing minimization step: 4909. Total energy = 4582.2764 kcal/mol (4579.0984 without restraints) Performing minimization step: 4910. Total energy = 4581.9471 kcal/mol (4578.7697 without restraints) Performing minimization step: 4911. Total energy = 4581.6182 kcal/mol (4578.4416 without restraints) Performing minimization step: 4912. Total energy = 4581.2895 kcal/mol (4578.1136 without restraints) Performing minimization step: 4913. Total energy = 4580.9619 kcal/mol (4577.7867 without restraints) Performing minimization step: 4914. Total energy = 4580.6335 kcal/mol (4577.4590 without restraints) Performing minimization step: 4915. Total energy = 4580.3060 kcal/mol (4577.1322 without restraints) Performing minimization step: 4916. Total energy = 4579.9784 kcal/mol (4576.8054 without restraints) Performing minimization step: 4917. Total energy = 4579.6507 kcal/mol (4576.4785 without restraints) Performing minimization step: 4918. Total energy = 4579.3234 kcal/mol (4576.1518 without restraints) Performing minimization step: 4919. Total energy = 4578.9963 kcal/mol (4575.8254 without restraints) Performing minimization step: 4920. Total energy = 4578.6696 kcal/mol (4575.4994 without restraints) Performing minimization step: 4921. Total energy = 4578.3429 kcal/mol (4575.1733 without restraints) Performing minimization step: 4922. Total energy = 4578.0161 kcal/mol (4574.8473 without restraints) Performing minimization step: 4923. Total energy = 4577.6895 kcal/mol (4574.5215 without restraints) Performing minimization step: 4924. Total energy = 4577.3628 kcal/mol (4574.1954 without restraints) Performing minimization step: 4925. Total energy = 4577.0367 kcal/mol (4573.8702 without restraints) Performing minimization step: 4926. Total energy = 4576.7111 kcal/mol (4573.5452 without restraints) Performing minimization step: 4927. Total energy = 4576.3852 kcal/mol (4573.2200 without restraints) Performing minimization step: 4928. Total energy = 4576.0605 kcal/mol (4572.8963 without restraints) Performing minimization step: 4929. Total energy = 4575.7354 kcal/mol (4572.5717 without restraints) Performing minimization step: 4930. Total energy = 4575.4103 kcal/mol (4572.2473 without restraints) Performing minimization step: 4931. Total energy = 4575.0854 kcal/mol (4571.9231 without restraints) Performing minimization step: 4932. Total energy = 4574.7610 kcal/mol (4571.5994 without restraints) Performing minimization step: 4933. Total energy = 4574.4365 kcal/mol (4571.2757 without restraints) Performing minimization step: 4934. Total energy = 4574.1123 kcal/mol (4570.9522 without restraints) Performing minimization step: 4935. Total energy = 4573.7885 kcal/mol (4570.6291 without restraints) Performing minimization step: 4936. Total energy = 4573.4648 kcal/mol (4570.3061 without restraints) Performing minimization step: 4937. Total energy = 4573.1417 kcal/mol (4569.9838 without restraints) Performing minimization step: 4938. Total energy = 4572.8182 kcal/mol (4569.6610 without restraints) Performing minimization step: 4939. Total energy = 4572.4953 kcal/mol (4569.3388 without restraints) Performing minimization step: 4940. Total energy = 4572.1722 kcal/mol (4569.0164 without restraints) Performing minimization step: 4941. Total energy = 4571.8497 kcal/mol (4568.6947 without restraints) Performing minimization step: 4942. Total energy = 4571.5271 kcal/mol (4568.3728 without restraints) Performing minimization step: 4943. Total energy = 4571.2047 kcal/mol (4568.0512 without restraints) Performing minimization step: 4944. Total energy = 4570.8828 kcal/mol (4567.7300 without restraints) Performing minimization step: 4945. Total energy = 4570.5605 kcal/mol (4567.4084 without restraints) Performing minimization step: 4946. Total energy = 4570.2387 kcal/mol (4567.0872 without restraints) Performing minimization step: 4947. Total energy = 4569.9172 kcal/mol (4566.7665 without restraints) Performing minimization step: 4948. Total energy = 4569.5961 kcal/mol (4566.4462 without restraints) Performing minimization step: 4949. Total energy = 4569.2762 kcal/mol (4566.1269 without restraints) Performing minimization step: 4950. Total energy = 4568.9556 kcal/mol (4565.8071 without restraints) Performing minimization step: 4951. Total energy = 4568.6354 kcal/mol (4565.4877 without restraints) Performing minimization step: 4952. Total energy = 4568.3152 kcal/mol (4565.1681 without restraints) Performing minimization step: 4953. Total energy = 4567.9947 kcal/mol (4564.8483 without restraints) Performing minimization step: 4954. Total energy = 4567.6744 kcal/mol (4564.5288 without restraints) Performing minimization step: 4955. Total energy = 4567.3543 kcal/mol (4564.2094 without restraints) Performing minimization step: 4956. Total energy = 4567.0348 kcal/mol (4563.8907 without restraints) Performing minimization step: 4957. Total energy = 4566.7154 kcal/mol (4563.5720 without restraints) Performing minimization step: 4958. Total energy = 4566.3959 kcal/mol (4563.2532 without restraints) Performing minimization step: 4959. Total energy = 4566.0768 kcal/mol (4562.9349 without restraints) Performing minimization step: 4960. Total energy = 4565.7578 kcal/mol (4562.6165 without restraints) Performing minimization step: 4961. Total energy = 4565.4389 kcal/mol (4562.2983 without restraints) Performing minimization step: 4962. Total energy = 4565.1202 kcal/mol (4561.9805 without restraints) Performing minimization step: 4963. Total energy = 4564.8018 kcal/mol (4561.6627 without restraints) Performing minimization step: 4964. Total energy = 4564.4839 kcal/mol (4561.3455 without restraints) Performing minimization step: 4965. Total energy = 4564.1657 kcal/mol (4561.0280 without restraints) Performing minimization step: 4966. Total energy = 4563.8483 kcal/mol (4560.7113 without restraints) Performing minimization step: 4967. Total energy = 4563.5305 kcal/mol (4560.3943 without restraints) Performing minimization step: 4968. Total energy = 4563.2130 kcal/mol (4560.0775 without restraints) Performing minimization step: 4969. Total energy = 4562.8961 kcal/mol (4559.7613 without restraints) Performing minimization step: 4970. Total energy = 4562.5788 kcal/mol (4559.4449 without restraints) Performing minimization step: 4971. Total energy = 4562.2620 kcal/mol (4559.1287 without restraints) Performing minimization step: 4972. Total energy = 4561.9452 kcal/mol (4558.8127 without restraints) Performing minimization step: 4973. Total energy = 4561.6290 kcal/mol (4558.4972 without restraints) Performing minimization step: 4974. Total energy = 4561.3129 kcal/mol (4558.1819 without restraints) Performing minimization step: 4975. Total energy = 4560.9976 kcal/mol (4557.8674 without restraints) Performing minimization step: 4976. Total energy = 4560.6819 kcal/mol (4557.5525 without restraints) Performing minimization step: 4977. Total energy = 4560.3661 kcal/mol (4557.2372 without restraints) Performing minimization step: 4978. Total energy = 4560.0508 kcal/mol (4556.9226 without restraints) Performing minimization step: 4979. Total energy = 4559.7356 kcal/mol (4556.6083 without restraints) Performing minimization step: 4980. Total energy = 4559.4207 kcal/mol (4556.2944 without restraints) Performing minimization step: 4981. Total energy = 4559.1065 kcal/mol (4555.9805 without restraints) Performing minimization step: 4982. Total energy = 4558.7919 kcal/mol (4555.6666 without restraints) Performing minimization step: 4983. Total energy = 4558.4776 kcal/mol (4555.3531 without restraints) Performing minimization step: 4984. Total energy = 4558.1634 kcal/mol (4555.0396 without restraints) Performing minimization step: 4985. Total energy = 4557.8493 kcal/mol (4554.7263 without restraints) Performing minimization step: 4986. Total energy = 4557.5349 kcal/mol (4554.4126 without restraints) Performing minimization step: 4987. Total energy = 4557.2212 kcal/mol (4554.0996 without restraints) Performing minimization step: 4988. Total energy = 4556.9075 kcal/mol (4553.7867 without restraints) Performing minimization step: 4989. Total energy = 4556.5939 kcal/mol (4553.4737 without restraints) Performing minimization step: 4990. Total energy = 4556.2809 kcal/mol (4553.1618 without restraints) Performing minimization step: 4991. Total energy = 4555.9683 kcal/mol (4552.8497 without restraints) Performing minimization step: 4992. Total energy = 4555.6556 kcal/mol (4552.5377 without restraints) Performing minimization step: 4993. Total energy = 4555.3430 kcal/mol (4552.2258 without restraints) Performing minimization step: 4994. Total energy = 4555.0304 kcal/mol (4551.9139 without restraints) Performing minimization step: 4995. Total energy = 4554.7180 kcal/mol (4551.6023 without restraints) Performing minimization step: 4996. Total energy = 4554.4061 kcal/mol (4551.2911 without restraints) Performing minimization step: 4997. Total energy = 4554.0941 kcal/mol (4550.9799 without restraints) Performing minimization step: 4998. Total energy = 4553.7824 kcal/mol (4550.6689 without restraints) Performing minimization step: 4999. Total energy = 4553.4709 kcal/mol (4550.3581 without restraints) Performing minimization step: 5000. Total energy = 4553.1596 kcal/mol (4550.0475 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/baffb23e/tmp/L2_refx/L2_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to L2_refx.pdb DONE!