============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1.pdb ============================================================================= Atom's 1 H5T residue renamed to RC5 Atom's 2 O5' residue renamed to RC5 Atom's 3 C5' residue renamed to RC5 Atom's 4 H5'1 residue renamed to RC5 Atom's 5 H5'2 residue renamed to RC5 Atom's 6 C4' residue renamed to RC5 Atom's 7 H4' residue renamed to RC5 Atom's 8 O4' residue renamed to RC5 Atom's 9 C1' residue renamed to RC5 Atom's 10 H1' residue renamed to RC5 Atom's 11 N1 residue renamed to RC5 Atom's 12 C6 residue renamed to RC5 Atom's 13 H6 residue renamed to RC5 Atom's 14 C2 residue renamed to RC5 Atom's 15 O2 residue renamed to RC5 Atom's 16 N3 residue renamed to RC5 Atom's 17 C4 residue renamed to RC5 Atom's 18 N4 residue renamed to RC5 Atom's 19 H41 residue renamed to RC5 Atom's 20 H42 residue renamed to RC5 Atom's 21 C5 residue renamed to RC5 Atom's 22 H5 residue renamed to RC5 Atom's 23 C2' residue renamed to RC5 Atom's 24 H2' residue renamed to RC5 Atom's 25 O2' residue renamed to RC5 Atom's 26 HO'2 residue renamed to RC5 Atom's 27 C3' residue renamed to RC5 Atom's 28 H3' residue renamed to RC5 Atom's 29 O3' residue renamed to RC5 Atom's 785 H3T residue renamed to RG3 Atom's 784 O3' residue renamed to RG3 Atom's 783 C3' residue renamed to RG3 Atom's 782 H3' residue renamed to RG3 Atom's 781 HO'2 residue renamed to RG3 Atom's 780 O2' residue renamed to RG3 Atom's 779 H2' residue renamed to RG3 Atom's 778 C2' residue renamed to RG3 Atom's 777 H8 residue renamed to RG3 Atom's 776 C8 residue renamed to RG3 Atom's 775 N7 residue renamed to RG3 Atom's 774 C5 residue renamed to RG3 Atom's 773 O6 residue renamed to RG3 Atom's 772 C6 residue renamed to RG3 Atom's 771 H1 residue renamed to RG3 Atom's 770 N1 residue renamed to RG3 Atom's 769 H22 residue renamed to RG3 Atom's 768 H21 residue renamed to RG3 Atom's 767 N2 residue renamed to RG3 Atom's 766 C2 residue renamed to RG3 Atom's 765 N3 residue renamed to RG3 Atom's 764 C4 residue renamed to RG3 Atom's 763 N9 residue renamed to RG3 Atom's 762 H1' residue renamed to RG3 Atom's 761 C1' residue renamed to RG3 Atom's 760 O4' residue renamed to RG3 Atom's 759 H4' residue renamed to RG3 Atom's 758 C4' residue renamed to RG3 Atom's 757 H5'2 residue renamed to RG3 Atom's 756 H5'1 residue renamed to RG3 Atom's 755 C5' residue renamed to RG3 Atom's 754 O5' residue renamed to RG3 Atom's 753 OP2 residue renamed to RG3 Atom's 752 OP1 residue renamed to RG3 Atom's 751 P residue renamed to RG3 Number of atoms: 785 Number of residues: 24 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 847 Number of angles built: 1509 Number of dihedrals built: 2298 Number of impropers built: 171 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 305364 Number of van der Waals pairs: 82014 Number of H-bonds built: 29 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 8 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 841.5 kcal/mol (839.7 without restraints) Performing minimization step: 2. Total energy = 839.3 kcal/mol (837.5 without restraints) Performing minimization step: 3. Total energy = 837.2 kcal/mol (835.4 without restraints) Performing minimization step: 4. Total energy = 835.1 kcal/mol (833.3 without restraints) Performing minimization step: 5. Total energy = 833 kcal/mol (831.2 without restraints) Performing minimization step: 6. Total energy = 830.9 kcal/mol (829.1 without restraints) Performing minimization step: 7. Total energy = 828.8 kcal/mol (827 without restraints) Performing minimization step: 8. Total energy = 826.7 kcal/mol (824.9 without restraints) Performing minimization step: 9. Total energy = 824.7 kcal/mol (822.9 without restraints) Performing minimization step: 10. Total energy = 822.6 kcal/mol (820.8 without restraints) Performing minimization step: 11. Total energy = 820.6 kcal/mol (818.8 without restraints) Performing minimization step: 12. Total energy = 818.6 kcal/mol (816.8 without restraints) Performing minimization step: 13. Total energy = 816.6 kcal/mol (814.8 without restraints) Performing minimization step: 14. Total energy = 814.6 kcal/mol (812.8 without restraints) Performing minimization step: 15. Total energy = 812.6 kcal/mol (810.8 without restraints) Performing minimization step: 16. Total energy = 810.7 kcal/mol (808.9 without restraints) Performing minimization step: 17. Total energy = 808.7 kcal/mol (806.9 without restraints) Performing minimization step: 18. Total energy = 806.8 kcal/mol (805 without restraints) Performing minimization step: 19. Total energy = 804.9 kcal/mol (803.1 without restraints) Performing minimization step: 20. Total energy = 803 kcal/mol (801.2 without restraints) Performing minimization step: 21. Total energy = 801.1 kcal/mol (799.3 without restraints) Performing minimization step: 22. Total energy = 799.2 kcal/mol (797.4 without restraints) Performing minimization step: 23. Total energy = 797.3 kcal/mol (795.6 without restraints) Performing minimization step: 24. Total energy = 795.5 kcal/mol (793.7 without restraints) Performing minimization step: 25. Total energy = 793.6 kcal/mol (791.9 without restraints) Performing minimization step: 26. Total energy = 791.8 kcal/mol (790.1 without restraints) Performing minimization step: 27. Total energy = 790 kcal/mol (788.2 without restraints) Performing minimization step: 28. Total energy = 788.2 kcal/mol (786.4 without restraints) Performing minimization step: 29. Total energy = 786.4 kcal/mol (784.6 without restraints) Performing minimization step: 30. Total energy = 784.6 kcal/mol (782.9 without restraints) Performing minimization step: 31. Total energy = 782.8 kcal/mol (781.1 without restraints) Performing minimization step: 32. Total energy = 781.1 kcal/mol (779.4 without restraints) Performing minimization step: 33. Total energy = 779.3 kcal/mol (777.6 without restraints) Performing minimization step: 34. Total energy = 777.6 kcal/mol (775.9 without restraints) Performing minimization step: 35. Total energy = 775.9 kcal/mol (774.2 without restraints) Performing minimization step: 36. Total energy = 774.2 kcal/mol (772.5 without restraints) Performing minimization step: 37. Total energy = 772.5 kcal/mol (770.8 without restraints) Performing minimization step: 38. Total energy = 770.8 kcal/mol (769.1 without restraints) Performing minimization step: 39. Total energy = 769.2 kcal/mol (767.4 without restraints) Performing minimization step: 40. Total energy = 767.5 kcal/mol (765.8 without restraints) Performing minimization step: 41. Total energy = 765.8 kcal/mol (764.1 without restraints) Performing minimization step: 42. Total energy = 764.2 kcal/mol (762.5 without restraints) Performing minimization step: 43. Total energy = 762.6 kcal/mol (760.9 without restraints) Performing minimization step: 44. Total energy = 761 kcal/mol (759.3 without restraints) Performing minimization step: 45. Total energy = 759.4 kcal/mol (757.7 without restraints) Performing minimization step: 46. Total energy = 757.8 kcal/mol (756.1 without restraints) Performing minimization step: 47. Total energy = 756.2 kcal/mol (754.5 without restraints) Performing minimization step: 48. Total energy = 754.6 kcal/mol (752.9 without restraints) Performing minimization step: 49. Total energy = 753.1 kcal/mol (751.4 without restraints) Performing minimization step: 50. Total energy = 751.5 kcal/mol (749.8 without restraints) Performing minimization step: 51. Total energy = 750 kcal/mol (748.3 without restraints) Performing minimization step: 52. Total energy = 748.5 kcal/mol (746.8 without restraints) Performing minimization step: 53. Total energy = 746.9 kcal/mol (745.3 without restraints) Performing minimization step: 54. Total energy = 745.4 kcal/mol (743.8 without restraints) Performing minimization step: 55. Total energy = 743.9 kcal/mol (742.3 without restraints) Performing minimization step: 56. Total energy = 742.5 kcal/mol (740.8 without restraints) Performing minimization step: 57. Total energy = 741 kcal/mol (739.3 without restraints) Performing minimization step: 58. Total energy = 739.5 kcal/mol (737.8 without restraints) Performing minimization step: 59. Total energy = 738.1 kcal/mol (736.4 without restraints) Performing minimization step: 60. Total energy = 736.6 kcal/mol (734.9 without restraints) Performing minimization step: 61. Total energy = 735.2 kcal/mol (733.5 without restraints) Performing minimization step: 62. Total energy = 733.7 kcal/mol (732.1 without restraints) Performing minimization step: 63. Total energy = 732.3 kcal/mol (730.7 without restraints) Performing minimization step: 64. Total energy = 730.9 kcal/mol (729.3 without restraints) Performing minimization step: 65. Total energy = 729.5 kcal/mol (727.9 without restraints) Performing minimization step: 66. Total energy = 728.1 kcal/mol (726.5 without restraints) Performing minimization step: 67. Total energy = 726.8 kcal/mol (725.1 without restraints) Performing minimization step: 68. Total energy = 725.4 kcal/mol (723.7 without restraints) Performing minimization step: 69. Total energy = 724 kcal/mol (722.4 without restraints) Performing minimization step: 70. Total energy = 722.7 kcal/mol (721 without restraints) Performing minimization step: 71. Total energy = 721.3 kcal/mol (719.7 without restraints) Performing minimization step: 72. Total energy = 720 kcal/mol (718.3 without restraints) Performing minimization step: 73. Total energy = 718.7 kcal/mol (717 without restraints) Performing minimization step: 74. Total energy = 717.3 kcal/mol (715.7 without restraints) Performing minimization step: 75. Total energy = 716 kcal/mol (714.4 without restraints) Performing minimization step: 76. Total energy = 714.7 kcal/mol (713.1 without restraints) Performing minimization step: 77. Total energy = 713.4 kcal/mol (711.8 without restraints) Performing minimization step: 78. Total energy = 712.2 kcal/mol (710.5 without restraints) Performing minimization step: 79. Total energy = 710.9 kcal/mol (709.2 without restraints) Performing minimization step: 80. Total energy = 709.6 kcal/mol (708 without restraints) Performing minimization step: 81. Total energy = 708.3 kcal/mol (706.7 without restraints) Performing minimization step: 82. Total energy = 707.1 kcal/mol (705.5 without restraints) Performing minimization step: 83. Total energy = 705.8 kcal/mol (704.2 without restraints) Performing minimization step: 84. Total energy = 704.6 kcal/mol (703 without restraints) Performing minimization step: 85. Total energy = 703.4 kcal/mol (701.7 without restraints) Performing minimization step: 86. Total energy = 702.2 kcal/mol (700.5 without restraints) Performing minimization step: 87. Total energy = 700.9 kcal/mol (699.3 without restraints) Performing minimization step: 88. Total energy = 699.7 kcal/mol (698.1 without restraints) Performing minimization step: 89. Total energy = 698.5 kcal/mol (696.9 without restraints) Performing minimization step: 90. Total energy = 697.3 kcal/mol (695.7 without restraints) Performing minimization step: 91. Total energy = 696.1 kcal/mol (694.5 without restraints) Performing minimization step: 92. Total energy = 695 kcal/mol (693.4 without restraints) Performing minimization step: 93. Total energy = 693.8 kcal/mol (692.2 without restraints) Performing minimization step: 94. Total energy = 692.6 kcal/mol (691 without restraints) Performing minimization step: 95. Total energy = 691.5 kcal/mol (689.9 without restraints) Performing minimization step: 96. Total energy = 690.3 kcal/mol (688.7 without restraints) Performing minimization step: 97. Total energy = 689.2 kcal/mol (687.6 without restraints) Performing minimization step: 98. Total energy = 688 kcal/mol (686.4 without restraints) Performing minimization step: 99. Total energy = 686.9 kcal/mol (685.3 without restraints) Performing minimization step: 100. Total energy = 685.8 kcal/mol (684.2 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 101. Total energy = 684.7 kcal/mol (683.1 without restraints) Performing minimization step: 102. Total energy = 683.5 kcal/mol (681.9 without restraints) Performing minimization step: 103. Total energy = 682.4 kcal/mol (680.8 without restraints) Performing minimization step: 104. Total energy = 681.3 kcal/mol (679.7 without restraints) Performing minimization step: 105. Total energy = 680.2 kcal/mol (678.6 without restraints) Performing minimization step: 106. Total energy = 679.2 kcal/mol (677.6 without restraints) Performing minimization step: 107. Total energy = 678.1 kcal/mol (676.5 without restraints) Performing minimization step: 108. Total energy = 677 kcal/mol (675.4 without restraints) Performing minimization step: 109. Total energy = 675.9 kcal/mol (674.3 without restraints) Performing minimization step: 110. Total energy = 674.9 kcal/mol (673.3 without restraints) Performing minimization step: 111. Total energy = 673.8 kcal/mol (672.2 without restraints) Performing minimization step: 112. Total energy = 672.7 kcal/mol (671.2 without restraints) Performing minimization step: 113. Total energy = 671.7 kcal/mol (670.1 without restraints) Performing minimization step: 114. Total energy = 670.7 kcal/mol (669.1 without restraints) Performing minimization step: 115. Total energy = 669.6 kcal/mol (668 without restraints) Performing minimization step: 116. Total energy = 668.6 kcal/mol (667 without restraints) Performing minimization step: 117. Total energy = 667.6 kcal/mol (666 without restraints) Performing minimization step: 118. Total energy = 666.5 kcal/mol (665 without restraints) Performing minimization step: 119. Total energy = 665.5 kcal/mol (663.9 without restraints) Performing minimization step: 120. Total energy = 664.5 kcal/mol (662.9 without restraints) Performing minimization step: 121. Total energy = 663.5 kcal/mol (661.9 without restraints) Performing minimization step: 122. Total energy = 662.5 kcal/mol (660.9 without restraints) Performing minimization step: 123. Total energy = 661.5 kcal/mol (659.9 without restraints) Performing minimization step: 124. Total energy = 660.5 kcal/mol (658.9 without restraints) Performing minimization step: 125. Total energy = 659.5 kcal/mol (658 without restraints) Performing minimization step: 126. Total energy = 658.5 kcal/mol (657 without restraints) Performing minimization step: 127. Total energy = 657.6 kcal/mol (656 without restraints) Performing minimization step: 128. Total energy = 656.6 kcal/mol (655 without restraints) Performing minimization step: 129. Total energy = 655.6 kcal/mol (654.1 without restraints) Performing minimization step: 130. Total energy = 654.7 kcal/mol (653.1 without restraints) Performing minimization step: 131. Total energy = 653.7 kcal/mol (652.1 without restraints) Performing minimization step: 132. Total energy = 652.7 kcal/mol (651.2 without restraints) Performing minimization step: 133. Total energy = 651.8 kcal/mol (650.2 without restraints) Performing minimization step: 134. Total energy = 650.8 kcal/mol (649.3 without restraints) Performing minimization step: 135. Total energy = 649.9 kcal/mol (648.3 without restraints) Performing minimization step: 136. Total energy = 649 kcal/mol (647.4 without restraints) Performing minimization step: 137. Total energy = 648 kcal/mol (646.5 without restraints) Performing minimization step: 138. Total energy = 647.1 kcal/mol (645.6 without restraints) Performing minimization step: 139. Total energy = 646.2 kcal/mol (644.6 without restraints) Performing minimization step: 140. Total energy = 645.3 kcal/mol (643.7 without restraints) Performing minimization step: 141. Total energy = 644.3 kcal/mol (642.8 without restraints) Performing minimization step: 142. Total energy = 643.4 kcal/mol (641.9 without restraints) Performing minimization step: 143. Total energy = 642.5 kcal/mol (641 without restraints) Performing minimization step: 144. Total energy = 641.6 kcal/mol (640.1 without restraints) Performing minimization step: 145. Total energy = 640.7 kcal/mol (639.2 without restraints) Performing minimization step: 146. Total energy = 639.8 kcal/mol (638.3 without restraints) Performing minimization step: 147. Total energy = 638.9 kcal/mol (637.4 without restraints) Performing minimization step: 148. Total energy = 638 kcal/mol (636.5 without restraints) Performing minimization step: 149. Total energy = 637.1 kcal/mol (635.6 without restraints) Performing minimization step: 150. Total energy = 636.3 kcal/mol (634.7 without restraints) Performing minimization step: 151. Total energy = 635.4 kcal/mol (633.9 without restraints) Performing minimization step: 152. Total energy = 634.5 kcal/mol (633 without restraints) Performing minimization step: 153. Total energy = 633.6 kcal/mol (632.1 without restraints) Performing minimization step: 154. Total energy = 632.8 kcal/mol (631.2 without restraints) Performing minimization step: 155. Total energy = 631.9 kcal/mol (630.4 without restraints) Performing minimization step: 156. Total energy = 631 kcal/mol (629.5 without restraints) Performing minimization step: 157. Total energy = 630.2 kcal/mol (628.7 without restraints) Performing minimization step: 158. Total energy = 629.3 kcal/mol (627.8 without restraints) Performing minimization step: 159. Total energy = 628.5 kcal/mol (627 without restraints) Performing minimization step: 160. Total energy = 627.6 kcal/mol (626.1 without restraints) Performing minimization step: 161. Total energy = 626.8 kcal/mol (625.3 without restraints) Performing minimization step: 162. Total energy = 626 kcal/mol (624.4 without restraints) Performing minimization step: 163. Total energy = 625.1 kcal/mol (623.6 without restraints) Performing minimization step: 164. Total energy = 624.3 kcal/mol (622.8 without restraints) Performing minimization step: 165. Total energy = 623.5 kcal/mol (621.9 without restraints) Performing minimization step: 166. Total energy = 622.6 kcal/mol (621.1 without restraints) Performing minimization step: 167. Total energy = 621.8 kcal/mol (620.3 without restraints) Performing minimization step: 168. Total energy = 621 kcal/mol (619.5 without restraints) Performing minimization step: 169. Total energy = 620.2 kcal/mol (618.7 without restraints) Performing minimization step: 170. Total energy = 619.4 kcal/mol (617.8 without restraints) Performing minimization step: 171. Total energy = 618.5 kcal/mol (617 without restraints) Performing minimization step: 172. Total energy = 617.7 kcal/mol (616.2 without restraints) Performing minimization step: 173. Total energy = 616.9 kcal/mol (615.4 without restraints) Performing minimization step: 174. Total energy = 616.1 kcal/mol (614.6 without restraints) Performing minimization step: 175. Total energy = 615.3 kcal/mol (613.8 without restraints) Performing minimization step: 176. Total energy = 614.5 kcal/mol (613 without restraints) Performing minimization step: 177. Total energy = 613.7 kcal/mol (612.2 without restraints) Performing minimization step: 178. Total energy = 612.9 kcal/mol (611.5 without restraints) Performing minimization step: 179. Total energy = 612.2 kcal/mol (610.7 without restraints) Performing minimization step: 180. Total energy = 611.4 kcal/mol (609.9 without restraints) Performing minimization step: 181. Total energy = 610.6 kcal/mol (609.1 without restraints) Performing minimization step: 182. Total energy = 609.8 kcal/mol (608.3 without restraints) Performing minimization step: 183. Total energy = 609 kcal/mol (607.5 without restraints) Performing minimization step: 184. Total energy = 608.3 kcal/mol (606.8 without restraints) Performing minimization step: 185. Total energy = 607.5 kcal/mol (606 without restraints) Performing minimization step: 186. Total energy = 606.7 kcal/mol (605.2 without restraints) Performing minimization step: 187. Total energy = 606 kcal/mol (604.5 without restraints) Performing minimization step: 188. Total energy = 605.2 kcal/mol (603.7 without restraints) Performing minimization step: 189. Total energy = 604.4 kcal/mol (603 without restraints) Performing minimization step: 190. Total energy = 603.7 kcal/mol (602.2 without restraints) Performing minimization step: 191. Total energy = 602.9 kcal/mol (601.4 without restraints) Performing minimization step: 192. Total energy = 602.2 kcal/mol (600.7 without restraints) Performing minimization step: 193. Total energy = 601.4 kcal/mol (599.9 without restraints) Performing minimization step: 194. Total energy = 600.7 kcal/mol (599.2 without restraints) Performing minimization step: 195. Total energy = 599.9 kcal/mol (598.5 without restraints) Performing minimization step: 196. Total energy = 599.2 kcal/mol (597.7 without restraints) Performing minimization step: 197. Total energy = 598.4 kcal/mol (597 without restraints) Performing minimization step: 198. Total energy = 597.7 kcal/mol (596.2 without restraints) Performing minimization step: 199. Total energy = 597 kcal/mol (595.5 without restraints) Performing minimization step: 200. Total energy = 596.2 kcal/mol (594.8 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 201. Total energy = 595.5 kcal/mol (594 without restraints) Performing minimization step: 202. Total energy = 594.8 kcal/mol (593.3 without restraints) Performing minimization step: 203. Total energy = 594.1 kcal/mol (592.6 without restraints) Performing minimization step: 204. Total energy = 593.3 kcal/mol (591.9 without restraints) Performing minimization step: 205. Total energy = 592.6 kcal/mol (591.2 without restraints) Performing minimization step: 206. Total energy = 591.9 kcal/mol (590.4 without restraints) Performing minimization step: 207. Total energy = 591.2 kcal/mol (589.7 without restraints) Performing minimization step: 208. Total energy = 590.5 kcal/mol (589 without restraints) Performing minimization step: 209. Total energy = 589.8 kcal/mol (588.3 without restraints) Performing minimization step: 210. Total energy = 589.1 kcal/mol (587.6 without restraints) Performing minimization step: 211. Total energy = 588.4 kcal/mol (586.9 without restraints) Performing minimization step: 212. Total energy = 587.7 kcal/mol (586.2 without restraints) Performing minimization step: 213. Total energy = 587 kcal/mol (585.5 without restraints) Performing minimization step: 214. Total energy = 586.3 kcal/mol (584.8 without restraints) Performing minimization step: 215. Total energy = 585.6 kcal/mol (584.1 without restraints) Performing minimization step: 216. Total energy = 584.9 kcal/mol (583.4 without restraints) Performing minimization step: 217. Total energy = 584.2 kcal/mol (582.7 without restraints) Performing minimization step: 218. Total energy = 583.5 kcal/mol (582 without restraints) Performing minimization step: 219. Total energy = 582.8 kcal/mol (581.4 without restraints) Performing minimization step: 220. Total energy = 582.1 kcal/mol (580.7 without restraints) Performing minimization step: 221. Total energy = 581.4 kcal/mol (580 without restraints) Performing minimization step: 222. Total energy = 580.7 kcal/mol (579.3 without restraints) Performing minimization step: 223. Total energy = 580.1 kcal/mol (578.6 without restraints) Performing minimization step: 224. Total energy = 579.4 kcal/mol (578 without restraints) Performing minimization step: 225. Total energy = 578.7 kcal/mol (577.3 without restraints) Performing minimization step: 226. Total energy = 578 kcal/mol (576.6 without restraints) Performing minimization step: 227. Total energy = 577.4 kcal/mol (575.9 without restraints) Performing minimization step: 228. Total energy = 576.7 kcal/mol (575.3 without restraints) Performing minimization step: 229. Total energy = 576 kcal/mol (574.6 without restraints) Performing minimization step: 230. Total energy = 575.4 kcal/mol (574 without restraints) Performing minimization step: 231. Total energy = 574.7 kcal/mol (573.3 without restraints) Performing minimization step: 232. Total energy = 574.1 kcal/mol (572.6 without restraints) Performing minimization step: 233. Total energy = 573.4 kcal/mol (572 without restraints) Performing minimization step: 234. Total energy = 572.7 kcal/mol (571.3 without restraints) Performing minimization step: 235. Total energy = 572.1 kcal/mol (570.7 without restraints) Performing minimization step: 236. Total energy = 571.4 kcal/mol (570 without restraints) Performing minimization step: 237. Total energy = 570.8 kcal/mol (569.4 without restraints) Performing minimization step: 238. Total energy = 570.1 kcal/mol (568.7 without restraints) Performing minimization step: 239. Total energy = 569.5 kcal/mol (568.1 without restraints) Performing minimization step: 240. Total energy = 568.9 kcal/mol (567.4 without restraints) Performing minimization step: 241. Total energy = 568.2 kcal/mol (566.8 without restraints) Performing minimization step: 242. Total energy = 567.6 kcal/mol (566.2 without restraints) Performing minimization step: 243. Total energy = 566.9 kcal/mol (565.5 without restraints) Performing minimization step: 244. Total energy = 566.3 kcal/mol (564.9 without restraints) Performing minimization step: 245. Total energy = 565.7 kcal/mol (564.3 without restraints) Performing minimization step: 246. Total energy = 565 kcal/mol (563.6 without restraints) Performing minimization step: 247. Total energy = 564.4 kcal/mol (563 without restraints) Performing minimization step: 248. Total energy = 563.8 kcal/mol (562.4 without restraints) Performing minimization step: 249. Total energy = 563.2 kcal/mol (561.8 without restraints) Performing minimization step: 250. Total energy = 562.5 kcal/mol (561.1 without restraints) Performing minimization step: 251. Total energy = 561.9 kcal/mol (560.5 without restraints) Performing minimization step: 252. Total energy = 561.3 kcal/mol (559.9 without restraints) Performing minimization step: 253. Total energy = 560.7 kcal/mol (559.3 without restraints) Performing minimization step: 254. Total energy = 560.1 kcal/mol (558.7 without restraints) Performing minimization step: 255. Total energy = 559.5 kcal/mol (558.1 without restraints) Performing minimization step: 256. Total energy = 558.8 kcal/mol (557.4 without restraints) Performing minimization step: 257. Total energy = 558.2 kcal/mol (556.8 without restraints) Performing minimization step: 258. Total energy = 557.6 kcal/mol (556.2 without restraints) Performing minimization step: 259. Total energy = 557 kcal/mol (555.6 without restraints) Performing minimization step: 260. Total energy = 556.4 kcal/mol (555 without restraints) Performing minimization step: 261. Total energy = 555.8 kcal/mol (554.4 without restraints) Performing minimization step: 262. Total energy = 555.2 kcal/mol (553.8 without restraints) Performing minimization step: 263. Total energy = 554.6 kcal/mol (553.2 without restraints) Performing minimization step: 264. Total energy = 554 kcal/mol (552.6 without restraints) Performing minimization step: 265. Total energy = 553.4 kcal/mol (552 without restraints) Performing minimization step: 266. Total energy = 552.8 kcal/mol (551.4 without restraints) Performing minimization step: 267. Total energy = 552.2 kcal/mol (550.9 without restraints) Performing minimization step: 268. Total energy = 551.6 kcal/mol (550.3 without restraints) Performing minimization step: 269. Total energy = 551.1 kcal/mol (549.7 without restraints) Performing minimization step: 270. Total energy = 550.5 kcal/mol (549.1 without restraints) Performing minimization step: 271. Total energy = 549.9 kcal/mol (548.5 without restraints) Performing minimization step: 272. Total energy = 549.3 kcal/mol (547.9 without restraints) Performing minimization step: 273. Total energy = 548.7 kcal/mol (547.3 without restraints) Performing minimization step: 274. Total energy = 548.1 kcal/mol (546.8 without restraints) Performing minimization step: 275. Total energy = 547.6 kcal/mol (546.2 without restraints) Performing minimization step: 276. Total energy = 547 kcal/mol (545.6 without restraints) Performing minimization step: 277. Total energy = 546.4 kcal/mol (545 without restraints) Performing minimization step: 278. Total energy = 545.8 kcal/mol (544.5 without restraints) Performing minimization step: 279. Total energy = 545.3 kcal/mol (543.9 without restraints) Performing minimization step: 280. Total energy = 544.7 kcal/mol (543.3 without restraints) Performing minimization step: 281. Total energy = 544.1 kcal/mol (542.8 without restraints) Performing minimization step: 282. Total energy = 543.6 kcal/mol (542.2 without restraints) Performing minimization step: 283. Total energy = 543 kcal/mol (541.6 without restraints) Performing minimization step: 284. Total energy = 542.4 kcal/mol (541.1 without restraints) Performing minimization step: 285. Total energy = 541.9 kcal/mol (540.5 without restraints) Performing minimization step: 286. Total energy = 541.3 kcal/mol (540 without restraints) Performing minimization step: 287. Total energy = 540.8 kcal/mol (539.4 without restraints) Performing minimization step: 288. Total energy = 540.2 kcal/mol (538.9 without restraints) Performing minimization step: 289. Total energy = 539.7 kcal/mol (538.3 without restraints) Performing minimization step: 290. Total energy = 539.1 kcal/mol (537.7 without restraints) Performing minimization step: 291. Total energy = 538.6 kcal/mol (537.2 without restraints) Performing minimization step: 292. Total energy = 538 kcal/mol (536.6 without restraints) Performing minimization step: 293. Total energy = 537.5 kcal/mol (536.1 without restraints) Performing minimization step: 294. Total energy = 536.9 kcal/mol (535.6 without restraints) Performing minimization step: 295. Total energy = 536.4 kcal/mol (535 without restraints) Performing minimization step: 296. Total energy = 535.8 kcal/mol (534.5 without restraints) Performing minimization step: 297. Total energy = 535.3 kcal/mol (533.9 without restraints) Performing minimization step: 298. Total energy = 534.7 kcal/mol (533.4 without restraints) Performing minimization step: 299. Total energy = 534.2 kcal/mol (532.9 without restraints) Performing minimization step: 300. Total energy = 533.7 kcal/mol (532.3 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 301. Total energy = 533.1 kcal/mol (531.8 without restraints) Performing minimization step: 302. Total energy = 532.6 kcal/mol (531.3 without restraints) Performing minimization step: 303. Total energy = 532.1 kcal/mol (530.7 without restraints) Performing minimization step: 304. Total energy = 531.5 kcal/mol (530.2 without restraints) Performing minimization step: 305. Total energy = 531 kcal/mol (529.7 without restraints) Performing minimization step: 306. Total energy = 530.5 kcal/mol (529.1 without restraints) Performing minimization step: 307. Total energy = 530 kcal/mol (528.6 without restraints) Performing minimization step: 308. Total energy = 529.4 kcal/mol (528.1 without restraints) Performing minimization step: 309. Total energy = 528.9 kcal/mol (527.6 without restraints) Performing minimization step: 310. Total energy = 528.4 kcal/mol (527.1 without restraints) Performing minimization step: 311. Total energy = 527.9 kcal/mol (526.5 without restraints) Performing minimization step: 312. Total energy = 527.3 kcal/mol (526 without restraints) Performing minimization step: 313. Total energy = 526.8 kcal/mol (525.5 without restraints) Performing minimization step: 314. Total energy = 526.3 kcal/mol (525 without restraints) Performing minimization step: 315. Total energy = 525.8 kcal/mol (524.5 without restraints) Performing minimization step: 316. Total energy = 525.3 kcal/mol (524 without restraints) Performing minimization step: 317. Total energy = 524.8 kcal/mol (523.5 without restraints) Performing minimization step: 318. Total energy = 524.3 kcal/mol (523 without restraints) Performing minimization step: 319. Total energy = 523.8 kcal/mol (522.4 without restraints) Performing minimization step: 320. Total energy = 523.3 kcal/mol (521.9 without restraints) Performing minimization step: 321. Total energy = 522.8 kcal/mol (521.4 without restraints) Performing minimization step: 322. Total energy = 522.2 kcal/mol (520.9 without restraints) Performing minimization step: 323. Total energy = 521.7 kcal/mol (520.4 without restraints) Performing minimization step: 324. Total energy = 521.2 kcal/mol (519.9 without restraints) Performing minimization step: 325. Total energy = 520.7 kcal/mol (519.4 without restraints) Performing minimization step: 326. Total energy = 520.3 kcal/mol (518.9 without restraints) Performing minimization step: 327. Total energy = 519.8 kcal/mol (518.4 without restraints) Performing minimization step: 328. Total energy = 519.3 kcal/mol (518 without restraints) Performing minimization step: 329. Total energy = 518.8 kcal/mol (517.5 without restraints) Performing minimization step: 330. Total energy = 518.3 kcal/mol (517 without restraints) Performing minimization step: 331. Total energy = 517.8 kcal/mol (516.5 without restraints) Performing minimization step: 332. Total energy = 517.3 kcal/mol (516 without restraints) Performing minimization step: 333. Total energy = 516.8 kcal/mol (515.5 without restraints) Performing minimization step: 334. Total energy = 516.3 kcal/mol (515 without restraints) Performing minimization step: 335. Total energy = 515.8 kcal/mol (514.5 without restraints) Performing minimization step: 336. Total energy = 515.4 kcal/mol (514.1 without restraints) Performing minimization step: 337. Total energy = 514.9 kcal/mol (513.6 without restraints) Performing minimization step: 338. Total energy = 514.4 kcal/mol (513.1 without restraints) Performing minimization step: 339. Total energy = 513.9 kcal/mol (512.6 without restraints) Performing minimization step: 340. Total energy = 513.4 kcal/mol (512.1 without restraints) Performing minimization step: 341. Total energy = 513 kcal/mol (511.7 without restraints) Performing minimization step: 342. Total energy = 512.5 kcal/mol (511.2 without restraints) Performing minimization step: 343. Total energy = 512 kcal/mol (510.7 without restraints) Performing minimization step: 344. Total energy = 511.5 kcal/mol (510.2 without restraints) Performing minimization step: 345. Total energy = 511.1 kcal/mol (509.8 without restraints) Performing minimization step: 346. Total energy = 510.6 kcal/mol (509.3 without restraints) Performing minimization step: 347. Total energy = 510.1 kcal/mol (508.8 without restraints) Performing minimization step: 348. Total energy = 509.7 kcal/mol (508.4 without restraints) Performing minimization step: 349. Total energy = 509.2 kcal/mol (507.9 without restraints) Performing minimization step: 350. Total energy = 508.7 kcal/mol (507.4 without restraints) Performing minimization step: 351. Total energy = 508.3 kcal/mol (507 without restraints) Performing minimization step: 352. Total energy = 507.8 kcal/mol (506.5 without restraints) Performing minimization step: 353. Total energy = 507.3 kcal/mol (506.1 without restraints) Performing minimization step: 354. Total energy = 506.9 kcal/mol (505.6 without restraints) Performing minimization step: 355. Total energy = 506.4 kcal/mol (505.2 without restraints) Performing minimization step: 356. Total energy = 506 kcal/mol (504.7 without restraints) Performing minimization step: 357. Total energy = 505.5 kcal/mol (504.2 without restraints) Performing minimization step: 358. Total energy = 505.1 kcal/mol (503.8 without restraints) Performing minimization step: 359. Total energy = 504.6 kcal/mol (503.3 without restraints) Performing minimization step: 360. Total energy = 504.2 kcal/mol (502.9 without restraints) Performing minimization step: 361. Total energy = 503.7 kcal/mol (502.4 without restraints) Performing minimization step: 362. Total energy = 503.3 kcal/mol (502 without restraints) Performing minimization step: 363. Total energy = 502.8 kcal/mol (501.5 without restraints) Performing minimization step: 364. Total energy = 502.4 kcal/mol (501.1 without restraints) Performing minimization step: 365. Total energy = 501.9 kcal/mol (500.7 without restraints) Performing minimization step: 366. Total energy = 501.5 kcal/mol (500.2 without restraints) Performing minimization step: 367. Total energy = 501 kcal/mol (499.8 without restraints) Performing minimization step: 368. Total energy = 500.6 kcal/mol (499.3 without restraints) Performing minimization step: 369. Total energy = 500.2 kcal/mol (498.9 without restraints) Performing minimization step: 370. Total energy = 499.7 kcal/mol (498.5 without restraints) Performing minimization step: 371. Total energy = 499.3 kcal/mol (498 without restraints) Performing minimization step: 372. Total energy = 498.8 kcal/mol (497.6 without restraints) Performing minimization step: 373. Total energy = 498.4 kcal/mol (497.1 without restraints) Performing minimization step: 374. Total energy = 498 kcal/mol (496.7 without restraints) Performing minimization step: 375. Total energy = 497.5 kcal/mol (496.3 without restraints) Performing minimization step: 376. Total energy = 497.1 kcal/mol (495.9 without restraints) Performing minimization step: 377. Total energy = 496.7 kcal/mol (495.4 without restraints) Performing minimization step: 378. Total energy = 496.2 kcal/mol (495 without restraints) Performing minimization step: 379. Total energy = 495.8 kcal/mol (494.6 without restraints) Performing minimization step: 380. Total energy = 495.4 kcal/mol (494.1 without restraints) Performing minimization step: 381. Total energy = 495 kcal/mol (493.7 without restraints) Performing minimization step: 382. Total energy = 494.5 kcal/mol (493.3 without restraints) Performing minimization step: 383. Total energy = 494.1 kcal/mol (492.9 without restraints) Performing minimization step: 384. Total energy = 493.7 kcal/mol (492.5 without restraints) Performing minimization step: 385. Total energy = 493.3 kcal/mol (492 without restraints) Performing minimization step: 386. Total energy = 492.9 kcal/mol (491.6 without restraints) Performing minimization step: 387. Total energy = 492.4 kcal/mol (491.2 without restraints) Performing minimization step: 388. Total energy = 492 kcal/mol (490.8 without restraints) Performing minimization step: 389. Total energy = 491.6 kcal/mol (490.4 without restraints) Performing minimization step: 390. Total energy = 491.2 kcal/mol (490 without restraints) Performing minimization step: 391. Total energy = 490.8 kcal/mol (489.5 without restraints) Performing minimization step: 392. Total energy = 490.4 kcal/mol (489.1 without restraints) Performing minimization step: 393. Total energy = 489.9 kcal/mol (488.7 without restraints) Performing minimization step: 394. Total energy = 489.5 kcal/mol (488.3 without restraints) Performing minimization step: 395. Total energy = 489.1 kcal/mol (487.9 without restraints) Performing minimization step: 396. Total energy = 488.7 kcal/mol (487.5 without restraints) Performing minimization step: 397. Total energy = 488.3 kcal/mol (487.1 without restraints) Performing minimization step: 398. Total energy = 487.9 kcal/mol (486.7 without restraints) Performing minimization step: 399. Total energy = 487.5 kcal/mol (486.3 without restraints) Performing minimization step: 400. Total energy = 487.1 kcal/mol (485.9 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 401. Total energy = 486.7 kcal/mol (485.5 without restraints) Performing minimization step: 402. Total energy = 486.3 kcal/mol (485.1 without restraints) Performing minimization step: 403. Total energy = 485.9 kcal/mol (484.7 without restraints) Performing minimization step: 404. Total energy = 485.5 kcal/mol (484.3 without restraints) Performing minimization step: 405. Total energy = 485.1 kcal/mol (483.9 without restraints) Performing minimization step: 406. Total energy = 484.7 kcal/mol (483.5 without restraints) Performing minimization step: 407. Total energy = 484.3 kcal/mol (483.1 without restraints) Performing minimization step: 408. Total energy = 483.9 kcal/mol (482.7 without restraints) Performing minimization step: 409. Total energy = 483.5 kcal/mol (482.3 without restraints) Performing minimization step: 410. Total energy = 483.1 kcal/mol (481.9 without restraints) Performing minimization step: 411. Total energy = 482.7 kcal/mol (481.5 without restraints) Performing minimization step: 412. Total energy = 482.3 kcal/mol (481.1 without restraints) Performing minimization step: 413. Total energy = 482 kcal/mol (480.7 without restraints) Performing minimization step: 414. Total energy = 481.6 kcal/mol (480.4 without restraints) Performing minimization step: 415. Total energy = 481.2 kcal/mol (480 without restraints) Performing minimization step: 416. Total energy = 480.8 kcal/mol (479.6 without restraints) Performing minimization step: 417. Total energy = 480.4 kcal/mol (479.2 without restraints) Performing minimization step: 418. Total energy = 480 kcal/mol (478.8 without restraints) Performing minimization step: 419. Total energy = 479.6 kcal/mol (478.4 without restraints) Performing minimization step: 420. Total energy = 479.3 kcal/mol (478.1 without restraints) Performing minimization step: 421. Total energy = 478.9 kcal/mol (477.7 without restraints) Performing minimization step: 422. Total energy = 478.5 kcal/mol (477.3 without restraints) Performing minimization step: 423. Total energy = 478.1 kcal/mol (476.9 without restraints) Performing minimization step: 424. Total energy = 477.7 kcal/mol (476.5 without restraints) Performing minimization step: 425. Total energy = 477.4 kcal/mol (476.2 without restraints) Performing minimization step: 426. Total energy = 477 kcal/mol (475.8 without restraints) Performing minimization step: 427. Total energy = 476.6 kcal/mol (475.4 without restraints) Performing minimization step: 428. Total energy = 476.2 kcal/mol (475 without restraints) Performing minimization step: 429. Total energy = 475.9 kcal/mol (474.7 without restraints) Performing minimization step: 430. Total energy = 475.5 kcal/mol (474.3 without restraints) Performing minimization step: 431. Total energy = 475.1 kcal/mol (473.9 without restraints) Performing minimization step: 432. Total energy = 474.8 kcal/mol (473.6 without restraints) Performing minimization step: 433. Total energy = 474.4 kcal/mol (473.2 without restraints) Performing minimization step: 434. Total energy = 474 kcal/mol (472.8 without restraints) Performing minimization step: 435. Total energy = 473.6 kcal/mol (472.5 without restraints) Performing minimization step: 436. Total energy = 473.3 kcal/mol (472.1 without restraints) Performing minimization step: 437. Total energy = 472.9 kcal/mol (471.7 without restraints) Performing minimization step: 438. Total energy = 472.6 kcal/mol (471.4 without restraints) Performing minimization step: 439. Total energy = 472.2 kcal/mol (471 without restraints) Performing minimization step: 440. Total energy = 471.8 kcal/mol (470.7 without restraints) Performing minimization step: 441. Total energy = 471.5 kcal/mol (470.3 without restraints) Performing minimization step: 442. Total energy = 471.1 kcal/mol (469.9 without restraints) Performing minimization step: 443. Total energy = 470.8 kcal/mol (469.6 without restraints) Performing minimization step: 444. Total energy = 470.4 kcal/mol (469.2 without restraints) Performing minimization step: 445. Total energy = 470 kcal/mol (468.9 without restraints) Performing minimization step: 446. Total energy = 469.7 kcal/mol (468.5 without restraints) Performing minimization step: 447. Total energy = 469.3 kcal/mol (468.2 without restraints) Performing minimization step: 448. Total energy = 469 kcal/mol (467.8 without restraints) Performing minimization step: 449. Total energy = 468.6 kcal/mol (467.5 without restraints) Performing minimization step: 450. Total energy = 468.3 kcal/mol (467.1 without restraints) Performing minimization step: 451. Total energy = 467.9 kcal/mol (466.8 without restraints) Performing minimization step: 452. Total energy = 467.6 kcal/mol (466.4 without restraints) Performing minimization step: 453. Total energy = 467.2 kcal/mol (466.1 without restraints) Performing minimization step: 454. Total energy = 466.9 kcal/mol (465.7 without restraints) Performing minimization step: 455. Total energy = 466.5 kcal/mol (465.4 without restraints) Performing minimization step: 456. Total energy = 466.2 kcal/mol (465 without restraints) Performing minimization step: 457. Total energy = 465.8 kcal/mol (464.7 without restraints) Performing minimization step: 458. Total energy = 465.5 kcal/mol (464.3 without restraints) Performing minimization step: 459. Total energy = 465.1 kcal/mol (464 without restraints) Performing minimization step: 460. Total energy = 464.8 kcal/mol (463.6 without restraints) Performing minimization step: 461. Total energy = 464.5 kcal/mol (463.3 without restraints) Performing minimization step: 462. Total energy = 464.1 kcal/mol (463 without restraints) Performing minimization step: 463. Total energy = 463.8 kcal/mol (462.6 without restraints) Performing minimization step: 464. Total energy = 463.4 kcal/mol (462.3 without restraints) Performing minimization step: 465. Total energy = 463.1 kcal/mol (462 without restraints) Performing minimization step: 466. Total energy = 462.8 kcal/mol (461.6 without restraints) Performing minimization step: 467. Total energy = 462.4 kcal/mol (461.3 without restraints) Performing minimization step: 468. Total energy = 462.1 kcal/mol (461 without restraints) Performing minimization step: 469. Total energy = 461.8 kcal/mol (460.6 without restraints) Performing minimization step: 470. Total energy = 461.4 kcal/mol (460.3 without restraints) Performing minimization step: 471. Total energy = 461.1 kcal/mol (460 without restraints) Performing minimization step: 472. Total energy = 460.8 kcal/mol (459.6 without restraints) Performing minimization step: 473. Total energy = 460.4 kcal/mol (459.3 without restraints) Performing minimization step: 474. Total energy = 460.1 kcal/mol (459 without restraints) Performing minimization step: 475. Total energy = 459.8 kcal/mol (458.6 without restraints) Performing minimization step: 476. Total energy = 459.4 kcal/mol (458.3 without restraints) Performing minimization step: 477. Total energy = 459.1 kcal/mol (458 without restraints) Performing minimization step: 478. Total energy = 458.8 kcal/mol (457.7 without restraints) Performing minimization step: 479. Total energy = 458.5 kcal/mol (457.3 without restraints) Performing minimization step: 480. Total energy = 458.1 kcal/mol (457 without restraints) Performing minimization step: 481. Total energy = 457.8 kcal/mol (456.7 without restraints) Performing minimization step: 482. Total energy = 457.5 kcal/mol (456.4 without restraints) Performing minimization step: 483. Total energy = 457.2 kcal/mol (456 without restraints) Performing minimization step: 484. Total energy = 456.8 kcal/mol (455.7 without restraints) Performing minimization step: 485. Total energy = 456.5 kcal/mol (455.4 without restraints) Performing minimization step: 486. Total energy = 456.2 kcal/mol (455.1 without restraints) Performing minimization step: 487. Total energy = 455.9 kcal/mol (454.8 without restraints) Performing minimization step: 488. Total energy = 455.6 kcal/mol (454.4 without restraints) Performing minimization step: 489. Total energy = 455.2 kcal/mol (454.1 without restraints) Performing minimization step: 490. Total energy = 454.9 kcal/mol (453.8 without restraints) Performing minimization step: 491. Total energy = 454.6 kcal/mol (453.5 without restraints) Performing minimization step: 492. Total energy = 454.3 kcal/mol (453.2 without restraints) Performing minimization step: 493. Total energy = 454 kcal/mol (452.9 without restraints) Performing minimization step: 494. Total energy = 453.7 kcal/mol (452.6 without restraints) Performing minimization step: 495. Total energy = 453.4 kcal/mol (452.3 without restraints) Performing minimization step: 496. Total energy = 453 kcal/mol (451.9 without restraints) Performing minimization step: 497. Total energy = 452.7 kcal/mol (451.6 without restraints) Performing minimization step: 498. Total energy = 452.4 kcal/mol (451.3 without restraints) Performing minimization step: 499. Total energy = 452.1 kcal/mol (451 without restraints) Performing minimization step: 500. Total energy = 451.8 kcal/mol (450.7 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 501. Total energy = 451.5 kcal/mol (450.4 without restraints) Performing minimization step: 502. Total energy = 451.2 kcal/mol (450.1 without restraints) Performing minimization step: 503. Total energy = 450.9 kcal/mol (449.8 without restraints) Performing minimization step: 504. Total energy = 450.6 kcal/mol (449.5 without restraints) Performing minimization step: 505. Total energy = 450.3 kcal/mol (449.2 without restraints) Performing minimization step: 506. Total energy = 450 kcal/mol (448.9 without restraints) Performing minimization step: 507. Total energy = 449.7 kcal/mol (448.6 without restraints) Performing minimization step: 508. Total energy = 449.4 kcal/mol (448.3 without restraints) Performing minimization step: 509. Total energy = 449.1 kcal/mol (448 without restraints) Performing minimization step: 510. Total energy = 448.8 kcal/mol (447.7 without restraints) Performing minimization step: 511. Total energy = 448.5 kcal/mol (447.4 without restraints) Performing minimization step: 512. Total energy = 448.2 kcal/mol (447.1 without restraints) Performing minimization step: 513. Total energy = 447.9 kcal/mol (446.8 without restraints) Performing minimization step: 514. Total energy = 447.6 kcal/mol (446.5 without restraints) Performing minimization step: 515. Total energy = 447.3 kcal/mol (446.2 without restraints) Performing minimization step: 516. Total energy = 447 kcal/mol (445.9 without restraints) Performing minimization step: 517. Total energy = 446.7 kcal/mol (445.6 without restraints) Performing minimization step: 518. Total energy = 446.4 kcal/mol (445.3 without restraints) Performing minimization step: 519. Total energy = 446.1 kcal/mol (445 without restraints) Performing minimization step: 520. Total energy = 445.8 kcal/mol (444.7 without restraints) Performing minimization step: 521. Total energy = 445.5 kcal/mol (444.4 without restraints) Performing minimization step: 522. Total energy = 445.2 kcal/mol (444.2 without restraints) Performing minimization step: 523. Total energy = 444.9 kcal/mol (443.9 without restraints) Performing minimization step: 524. Total energy = 444.6 kcal/mol (443.6 without restraints) Performing minimization step: 525. Total energy = 444.4 kcal/mol (443.3 without restraints) Performing minimization step: 526. Total energy = 444.1 kcal/mol (443 without restraints) Performing minimization step: 527. Total energy = 443.8 kcal/mol (442.7 without restraints) Performing minimization step: 528. Total energy = 443.5 kcal/mol (442.4 without restraints) Performing minimization step: 529. Total energy = 443.2 kcal/mol (442.1 without restraints) Performing minimization step: 530. Total energy = 442.9 kcal/mol (441.9 without restraints) Performing minimization step: 531. Total energy = 442.6 kcal/mol (441.6 without restraints) Performing minimization step: 532. Total energy = 442.4 kcal/mol (441.3 without restraints) Performing minimization step: 533. Total energy = 442.1 kcal/mol (441 without restraints) Performing minimization step: 534. Total energy = 441.8 kcal/mol (440.7 without restraints) Performing minimization step: 535. Total energy = 441.5 kcal/mol (440.5 without restraints) Performing minimization step: 536. Total energy = 441.2 kcal/mol (440.2 without restraints) Performing minimization step: 537. Total energy = 440.9 kcal/mol (439.9 without restraints) Performing minimization step: 538. Total energy = 440.7 kcal/mol (439.6 without restraints) Performing minimization step: 539. Total energy = 440.4 kcal/mol (439.3 without restraints) Performing minimization step: 540. Total energy = 440.1 kcal/mol (439.1 without restraints) Performing minimization step: 541. Total energy = 439.8 kcal/mol (438.8 without restraints) Performing minimization step: 542. Total energy = 439.6 kcal/mol (438.5 without restraints) Performing minimization step: 543. Total energy = 439.3 kcal/mol (438.2 without restraints) Performing minimization step: 544. Total energy = 439 kcal/mol (438 without restraints) Performing minimization step: 545. Total energy = 438.7 kcal/mol (437.7 without restraints) Performing minimization step: 546. Total energy = 438.5 kcal/mol (437.4 without restraints) Performing minimization step: 547. Total energy = 438.2 kcal/mol (437.1 without restraints) Performing minimization step: 548. Total energy = 437.9 kcal/mol (436.9 without restraints) Performing minimization step: 549. Total energy = 437.6 kcal/mol (436.6 without restraints) Performing minimization step: 550. Total energy = 437.4 kcal/mol (436.3 without restraints) Performing minimization step: 551. Total energy = 437.1 kcal/mol (436.1 without restraints) Performing minimization step: 552. Total energy = 436.8 kcal/mol (435.8 without restraints) Performing minimization step: 553. Total energy = 436.6 kcal/mol (435.5 without restraints) Performing minimization step: 554. Total energy = 436.3 kcal/mol (435.3 without restraints) Performing minimization step: 555. Total energy = 436 kcal/mol (435 without restraints) Performing minimization step: 556. Total energy = 435.8 kcal/mol (434.7 without restraints) Performing minimization step: 557. Total energy = 435.5 kcal/mol (434.5 without restraints) Performing minimization step: 558. Total energy = 435.2 kcal/mol (434.2 without restraints) Performing minimization step: 559. Total energy = 435 kcal/mol (433.9 without restraints) Performing minimization step: 560. Total energy = 434.7 kcal/mol (433.7 without restraints) Performing minimization step: 561. Total energy = 434.4 kcal/mol (433.4 without restraints) Performing minimization step: 562. Total energy = 434.2 kcal/mol (433.1 without restraints) Performing minimization step: 563. Total energy = 433.9 kcal/mol (432.9 without restraints) Performing minimization step: 564. Total energy = 433.6 kcal/mol (432.6 without restraints) Performing minimization step: 565. Total energy = 433.4 kcal/mol (432.4 without restraints) Performing minimization step: 566. Total energy = 433.1 kcal/mol (432.1 without restraints) Performing minimization step: 567. Total energy = 432.9 kcal/mol (431.8 without restraints) Performing minimization step: 568. Total energy = 432.6 kcal/mol (431.6 without restraints) Performing minimization step: 569. Total energy = 432.3 kcal/mol (431.3 without restraints) Performing minimization step: 570. Total energy = 432.1 kcal/mol (431.1 without restraints) Performing minimization step: 571. Total energy = 431.8 kcal/mol (430.8 without restraints) Performing minimization step: 572. Total energy = 431.6 kcal/mol (430.6 without restraints) Performing minimization step: 573. Total energy = 431.3 kcal/mol (430.3 without restraints) Performing minimization step: 574. Total energy = 431.1 kcal/mol (430.1 without restraints) Performing minimization step: 575. Total energy = 430.8 kcal/mol (429.8 without restraints) Performing minimization step: 576. Total energy = 430.6 kcal/mol (429.5 without restraints) Performing minimization step: 577. Total energy = 430.3 kcal/mol (429.3 without restraints) Performing minimization step: 578. Total energy = 430.1 kcal/mol (429 without restraints) Performing minimization step: 579. Total energy = 429.8 kcal/mol (428.8 without restraints) Performing minimization step: 580. Total energy = 429.5 kcal/mol (428.5 without restraints) Performing minimization step: 581. Total energy = 429.3 kcal/mol (428.3 without restraints) Performing minimization step: 582. Total energy = 429 kcal/mol (428 without restraints) Performing minimization step: 583. Total energy = 428.8 kcal/mol (427.8 without restraints) Performing minimization step: 584. Total energy = 428.5 kcal/mol (427.5 without restraints) Performing minimization step: 585. Total energy = 428.3 kcal/mol (427.3 without restraints) Performing minimization step: 586. Total energy = 428.1 kcal/mol (427.1 without restraints) Performing minimization step: 587. Total energy = 427.8 kcal/mol (426.8 without restraints) Performing minimization step: 588. Total energy = 427.6 kcal/mol (426.6 without restraints) Performing minimization step: 589. Total energy = 427.3 kcal/mol (426.3 without restraints) Performing minimization step: 590. Total energy = 427.1 kcal/mol (426.1 without restraints) Performing minimization step: 591. Total energy = 426.8 kcal/mol (425.8 without restraints) Performing minimization step: 592. Total energy = 426.6 kcal/mol (425.6 without restraints) Performing minimization step: 593. Total energy = 426.3 kcal/mol (425.3 without restraints) Performing minimization step: 594. Total energy = 426.1 kcal/mol (425.1 without restraints) Performing minimization step: 595. Total energy = 425.8 kcal/mol (424.9 without restraints) Performing minimization step: 596. Total energy = 425.6 kcal/mol (424.6 without restraints) Performing minimization step: 597. Total energy = 425.4 kcal/mol (424.4 without restraints) Performing minimization step: 598. Total energy = 425.1 kcal/mol (424.1 without restraints) Performing minimization step: 599. Total energy = 424.9 kcal/mol (423.9 without restraints) Performing minimization step: 600. Total energy = 424.6 kcal/mol (423.7 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 601. Total energy = 424.4 kcal/mol (423.4 without restraints) Performing minimization step: 602. Total energy = 424.2 kcal/mol (423.2 without restraints) Performing minimization step: 603. Total energy = 423.9 kcal/mol (423 without restraints) Performing minimization step: 604. Total energy = 423.7 kcal/mol (422.7 without restraints) Performing minimization step: 605. Total energy = 423.5 kcal/mol (422.5 without restraints) Performing minimization step: 606. Total energy = 423.2 kcal/mol (422.2 without restraints) Performing minimization step: 607. Total energy = 423 kcal/mol (422 without restraints) Performing minimization step: 608. Total energy = 422.7 kcal/mol (421.8 without restraints) Performing minimization step: 609. Total energy = 422.5 kcal/mol (421.5 without restraints) Performing minimization step: 610. Total energy = 422.3 kcal/mol (421.3 without restraints) Performing minimization step: 611. Total energy = 422 kcal/mol (421.1 without restraints) Performing minimization step: 612. Total energy = 421.8 kcal/mol (420.8 without restraints) Performing minimization step: 613. Total energy = 421.6 kcal/mol (420.6 without restraints) Performing minimization step: 614. Total energy = 421.3 kcal/mol (420.4 without restraints) Performing minimization step: 615. Total energy = 421.1 kcal/mol (420.2 without restraints) Performing minimization step: 616. Total energy = 420.9 kcal/mol (419.9 without restraints) Performing minimization step: 617. Total energy = 420.7 kcal/mol (419.7 without restraints) Performing minimization step: 618. Total energy = 420.4 kcal/mol (419.5 without restraints) Performing minimization step: 619. Total energy = 420.2 kcal/mol (419.2 without restraints) Performing minimization step: 620. Total energy = 420 kcal/mol (419 without restraints) Performing minimization step: 621. Total energy = 419.7 kcal/mol (418.8 without restraints) Performing minimization step: 622. Total energy = 419.5 kcal/mol (418.6 without restraints) Performing minimization step: 623. Total energy = 419.3 kcal/mol (418.3 without restraints) Performing minimization step: 624. Total energy = 419.1 kcal/mol (418.1 without restraints) Performing minimization step: 625. Total energy = 418.8 kcal/mol (417.9 without restraints) Performing minimization step: 626. Total energy = 418.6 kcal/mol (417.7 without restraints) Performing minimization step: 627. Total energy = 418.4 kcal/mol (417.4 without restraints) Performing minimization step: 628. Total energy = 418.2 kcal/mol (417.2 without restraints) Performing minimization step: 629. Total energy = 417.9 kcal/mol (417 without restraints) Performing minimization step: 630. Total energy = 417.7 kcal/mol (416.8 without restraints) Performing minimization step: 631. Total energy = 417.5 kcal/mol (416.5 without restraints) Performing minimization step: 632. Total energy = 417.3 kcal/mol (416.3 without restraints) Performing minimization step: 633. Total energy = 417.1 kcal/mol (416.1 without restraints) Performing minimization step: 634. Total energy = 416.8 kcal/mol (415.9 without restraints) Performing minimization step: 635. Total energy = 416.6 kcal/mol (415.7 without restraints) Performing minimization step: 636. Total energy = 416.4 kcal/mol (415.5 without restraints) Performing minimization step: 637. Total energy = 416.2 kcal/mol (415.2 without restraints) Performing minimization step: 638. Total energy = 416 kcal/mol (415 without restraints) Performing minimization step: 639. Total energy = 415.7 kcal/mol (414.8 without restraints) Performing minimization step: 640. Total energy = 415.5 kcal/mol (414.6 without restraints) Performing minimization step: 641. Total energy = 415.3 kcal/mol (414.4 without restraints) Performing minimization step: 642. Total energy = 415.1 kcal/mol (414.1 without restraints) Performing minimization step: 643. Total energy = 414.9 kcal/mol (413.9 without restraints) Performing minimization step: 644. Total energy = 414.6 kcal/mol (413.7 without restraints) Performing minimization step: 645. Total energy = 414.4 kcal/mol (413.5 without restraints) Performing minimization step: 646. Total energy = 414.2 kcal/mol (413.3 without restraints) Performing minimization step: 647. Total energy = 414 kcal/mol (413.1 without restraints) Performing minimization step: 648. Total energy = 413.8 kcal/mol (412.9 without restraints) Performing minimization step: 649. Total energy = 413.6 kcal/mol (412.7 without restraints) Performing minimization step: 650. Total energy = 413.4 kcal/mol (412.4 without restraints) Performing minimization step: 651. Total energy = 413.2 kcal/mol (412.2 without restraints) Performing minimization step: 652. Total energy = 412.9 kcal/mol (412 without restraints) Performing minimization step: 653. Total energy = 412.7 kcal/mol (411.8 without restraints) Performing minimization step: 654. Total energy = 412.5 kcal/mol (411.6 without restraints) Performing minimization step: 655. Total energy = 412.3 kcal/mol (411.4 without restraints) Performing minimization step: 656. Total energy = 412.1 kcal/mol (411.2 without restraints) Performing minimization step: 657. Total energy = 411.9 kcal/mol (411 without restraints) Performing minimization step: 658. Total energy = 411.7 kcal/mol (410.8 without restraints) Performing minimization step: 659. Total energy = 411.5 kcal/mol (410.6 without restraints) Performing minimization step: 660. Total energy = 411.3 kcal/mol (410.4 without restraints) Performing minimization step: 661. Total energy = 411.1 kcal/mol (410.1 without restraints) Performing minimization step: 662. Total energy = 410.8 kcal/mol (409.9 without restraints) Performing minimization step: 663. Total energy = 410.6 kcal/mol (409.7 without restraints) Performing minimization step: 664. Total energy = 410.4 kcal/mol (409.5 without restraints) Performing minimization step: 665. Total energy = 410.2 kcal/mol (409.3 without restraints) Performing minimization step: 666. Total energy = 410 kcal/mol (409.1 without restraints) Performing minimization step: 667. Total energy = 409.8 kcal/mol (408.9 without restraints) Performing minimization step: 668. Total energy = 409.6 kcal/mol (408.7 without restraints) Performing minimization step: 669. Total energy = 409.4 kcal/mol (408.5 without restraints) Performing minimization step: 670. Total energy = 409.2 kcal/mol (408.3 without restraints) Performing minimization step: 671. Total energy = 409 kcal/mol (408.1 without restraints) Performing minimization step: 672. Total energy = 408.8 kcal/mol (407.9 without restraints) Performing minimization step: 673. Total energy = 408.6 kcal/mol (407.7 without restraints) Performing minimization step: 674. Total energy = 408.4 kcal/mol (407.5 without restraints) Performing minimization step: 675. Total energy = 408.2 kcal/mol (407.3 without restraints) Performing minimization step: 676. Total energy = 408 kcal/mol (407.1 without restraints) Performing minimization step: 677. Total energy = 407.8 kcal/mol (406.9 without restraints) Performing minimization step: 678. Total energy = 407.6 kcal/mol (406.7 without restraints) Performing minimization step: 679. Total energy = 407.4 kcal/mol (406.5 without restraints) Performing minimization step: 680. Total energy = 407.2 kcal/mol (406.3 without restraints) Performing minimization step: 681. Total energy = 407 kcal/mol (406.1 without restraints) Performing minimization step: 682. Total energy = 406.8 kcal/mol (405.9 without restraints) Performing minimization step: 683. Total energy = 406.6 kcal/mol (405.7 without restraints) Performing minimization step: 684. Total energy = 406.4 kcal/mol (405.5 without restraints) Performing minimization step: 685. Total energy = 406.2 kcal/mol (405.3 without restraints) Performing minimization step: 686. Total energy = 406 kcal/mol (405.1 without restraints) Performing minimization step: 687. Total energy = 405.8 kcal/mol (404.9 without restraints) Performing minimization step: 688. Total energy = 405.6 kcal/mol (404.7 without restraints) Performing minimization step: 689. Total energy = 405.4 kcal/mol (404.6 without restraints) Performing minimization step: 690. Total energy = 405.2 kcal/mol (404.4 without restraints) Performing minimization step: 691. Total energy = 405 kcal/mol (404.2 without restraints) Performing minimization step: 692. Total energy = 404.8 kcal/mol (404 without restraints) Performing minimization step: 693. Total energy = 404.7 kcal/mol (403.8 without restraints) Performing minimization step: 694. Total energy = 404.5 kcal/mol (403.6 without restraints) Performing minimization step: 695. Total energy = 404.3 kcal/mol (403.4 without restraints) Performing minimization step: 696. Total energy = 404.1 kcal/mol (403.2 without restraints) Performing minimization step: 697. Total energy = 403.9 kcal/mol (403 without restraints) Performing minimization step: 698. Total energy = 403.7 kcal/mol (402.8 without restraints) Performing minimization step: 699. Total energy = 403.5 kcal/mol (402.6 without restraints) Performing minimization step: 700. Total energy = 403.3 kcal/mol (402.4 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 701. Total energy = 403.1 kcal/mol (402.3 without restraints) Performing minimization step: 702. Total energy = 402.9 kcal/mol (402.1 without restraints) Performing minimization step: 703. Total energy = 402.7 kcal/mol (401.9 without restraints) Performing minimization step: 704. Total energy = 402.6 kcal/mol (401.7 without restraints) Performing minimization step: 705. Total energy = 402.4 kcal/mol (401.5 without restraints) Performing minimization step: 706. Total energy = 402.2 kcal/mol (401.3 without restraints) Performing minimization step: 707. Total energy = 402 kcal/mol (401.1 without restraints) Performing minimization step: 708. Total energy = 401.8 kcal/mol (401 without restraints) Performing minimization step: 709. Total energy = 401.6 kcal/mol (400.8 without restraints) Performing minimization step: 710. Total energy = 401.4 kcal/mol (400.6 without restraints) Performing minimization step: 711. Total energy = 401.3 kcal/mol (400.4 without restraints) Performing minimization step: 712. Total energy = 401.1 kcal/mol (400.2 without restraints) Performing minimization step: 713. Total energy = 400.9 kcal/mol (400 without restraints) Performing minimization step: 714. Total energy = 400.7 kcal/mol (399.8 without restraints) Performing minimization step: 715. Total energy = 400.5 kcal/mol (399.7 without restraints) Performing minimization step: 716. Total energy = 400.3 kcal/mol (399.5 without restraints) Performing minimization step: 717. Total energy = 400.1 kcal/mol (399.3 without restraints) Performing minimization step: 718. Total energy = 400 kcal/mol (399.1 without restraints) Performing minimization step: 719. Total energy = 399.8 kcal/mol (398.9 without restraints) Performing minimization step: 720. Total energy = 399.6 kcal/mol (398.8 without restraints) Performing minimization step: 721. Total energy = 399.4 kcal/mol (398.6 without restraints) Performing minimization step: 722. Total energy = 399.2 kcal/mol (398.4 without restraints) Performing minimization step: 723. Total energy = 399.1 kcal/mol (398.2 without restraints) Performing minimization step: 724. Total energy = 398.9 kcal/mol (398 without restraints) Performing minimization step: 725. Total energy = 398.7 kcal/mol (397.9 without restraints) Performing minimization step: 726. Total energy = 398.5 kcal/mol (397.7 without restraints) Performing minimization step: 727. Total energy = 398.3 kcal/mol (397.5 without restraints) Performing minimization step: 728. Total energy = 398.2 kcal/mol (397.3 without restraints) Performing minimization step: 729. Total energy = 398 kcal/mol (397.1 without restraints) Performing minimization step: 730. Total energy = 397.8 kcal/mol (397 without restraints) Performing minimization step: 731. Total energy = 397.6 kcal/mol (396.8 without restraints) Performing minimization step: 732. Total energy = 397.4 kcal/mol (396.6 without restraints) Performing minimization step: 733. Total energy = 397.3 kcal/mol (396.4 without restraints) Performing minimization step: 734. Total energy = 397.1 kcal/mol (396.3 without restraints) Performing minimization step: 735. Total energy = 396.9 kcal/mol (396.1 without restraints) Performing minimization step: 736. Total energy = 396.7 kcal/mol (395.9 without restraints) Performing minimization step: 737. Total energy = 396.6 kcal/mol (395.7 without restraints) Performing minimization step: 738. Total energy = 396.4 kcal/mol (395.6 without restraints) Performing minimization step: 739. Total energy = 396.2 kcal/mol (395.4 without restraints) Performing minimization step: 740. Total energy = 396 kcal/mol (395.2 without restraints) Performing minimization step: 741. Total energy = 395.9 kcal/mol (395 without restraints) Performing minimization step: 742. Total energy = 395.7 kcal/mol (394.9 without restraints) Performing minimization step: 743. Total energy = 395.5 kcal/mol (394.7 without restraints) Performing minimization step: 744. Total energy = 395.3 kcal/mol (394.5 without restraints) Performing minimization step: 745. Total energy = 395.2 kcal/mol (394.4 without restraints) Performing minimization step: 746. Total energy = 395 kcal/mol (394.2 without restraints) Performing minimization step: 747. Total energy = 394.8 kcal/mol (394 without restraints) Performing minimization step: 748. Total energy = 394.7 kcal/mol (393.8 without restraints) Performing minimization step: 749. Total energy = 394.5 kcal/mol (393.7 without restraints) Performing minimization step: 750. Total energy = 394.3 kcal/mol (393.5 without restraints) Performing minimization step: 751. Total energy = 394.1 kcal/mol (393.3 without restraints) Performing minimization step: 752. Total energy = 394 kcal/mol (393.2 without restraints) Performing minimization step: 753. Total energy = 393.8 kcal/mol (393 without restraints) Performing minimization step: 754. Total energy = 393.6 kcal/mol (392.8 without restraints) Performing minimization step: 755. Total energy = 393.5 kcal/mol (392.7 without restraints) Performing minimization step: 756. Total energy = 393.3 kcal/mol (392.5 without restraints) Performing minimization step: 757. Total energy = 393.1 kcal/mol (392.3 without restraints) Performing minimization step: 758. Total energy = 393 kcal/mol (392.2 without restraints) Performing minimization step: 759. Total energy = 392.8 kcal/mol (392 without restraints) Performing minimization step: 760. Total energy = 392.6 kcal/mol (391.8 without restraints) Performing minimization step: 761. Total energy = 392.5 kcal/mol (391.7 without restraints) Performing minimization step: 762. Total energy = 392.3 kcal/mol (391.5 without restraints) Performing minimization step: 763. Total energy = 392.1 kcal/mol (391.3 without restraints) Performing minimization step: 764. Total energy = 392 kcal/mol (391.2 without restraints) Performing minimization step: 765. Total energy = 391.8 kcal/mol (391 without restraints) Performing minimization step: 766. Total energy = 391.6 kcal/mol (390.8 without restraints) Performing minimization step: 767. Total energy = 391.5 kcal/mol (390.7 without restraints) Performing minimization step: 768. Total energy = 391.3 kcal/mol (390.5 without restraints) Performing minimization step: 769. Total energy = 391.1 kcal/mol (390.3 without restraints) Performing minimization step: 770. Total energy = 391 kcal/mol (390.2 without restraints) Performing minimization step: 771. Total energy = 390.8 kcal/mol (390 without restraints) Performing minimization step: 772. Total energy = 390.6 kcal/mol (389.9 without restraints) Performing minimization step: 773. Total energy = 390.5 kcal/mol (389.7 without restraints) Performing minimization step: 774. Total energy = 390.3 kcal/mol (389.5 without restraints) Performing minimization step: 775. Total energy = 390.2 kcal/mol (389.4 without restraints) Performing minimization step: 776. Total energy = 390 kcal/mol (389.2 without restraints) Performing minimization step: 777. Total energy = 389.8 kcal/mol (389.1 without restraints) Performing minimization step: 778. Total energy = 389.7 kcal/mol (388.9 without restraints) Performing minimization step: 779. Total energy = 389.5 kcal/mol (388.7 without restraints) Performing minimization step: 780. Total energy = 389.4 kcal/mol (388.6 without restraints) Performing minimization step: 781. Total energy = 389.2 kcal/mol (388.4 without restraints) Performing minimization step: 782. Total energy = 389 kcal/mol (388.3 without restraints) Performing minimization step: 783. Total energy = 388.9 kcal/mol (388.1 without restraints) Performing minimization step: 784. Total energy = 388.7 kcal/mol (387.9 without restraints) Performing minimization step: 785. Total energy = 388.6 kcal/mol (387.8 without restraints) Performing minimization step: 786. Total energy = 388.4 kcal/mol (387.6 without restraints) Performing minimization step: 787. Total energy = 388.2 kcal/mol (387.5 without restraints) Performing minimization step: 788. Total energy = 388.1 kcal/mol (387.3 without restraints) Performing minimization step: 789. Total energy = 387.9 kcal/mol (387.2 without restraints) Performing minimization step: 790. Total energy = 387.8 kcal/mol (387 without restraints) Performing minimization step: 791. Total energy = 387.6 kcal/mol (386.8 without restraints) Performing minimization step: 792. Total energy = 387.5 kcal/mol (386.7 without restraints) Performing minimization step: 793. Total energy = 387.3 kcal/mol (386.5 without restraints) Performing minimization step: 794. Total energy = 387.1 kcal/mol (386.4 without restraints) Performing minimization step: 795. Total energy = 387 kcal/mol (386.2 without restraints) Performing minimization step: 796. Total energy = 386.8 kcal/mol (386.1 without restraints) Performing minimization step: 797. Total energy = 386.7 kcal/mol (385.9 without restraints) Performing minimization step: 798. Total energy = 386.5 kcal/mol (385.8 without restraints) Performing minimization step: 799. Total energy = 386.4 kcal/mol (385.6 without restraints) Performing minimization step: 800. Total energy = 386.2 kcal/mol (385.4 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 801. Total energy = 386.1 kcal/mol (385.3 without restraints) Performing minimization step: 802. Total energy = 385.9 kcal/mol (385.1 without restraints) Performing minimization step: 803. Total energy = 385.8 kcal/mol (385 without restraints) Performing minimization step: 804. Total energy = 385.6 kcal/mol (384.8 without restraints) Performing minimization step: 805. Total energy = 385.4 kcal/mol (384.7 without restraints) Performing minimization step: 806. Total energy = 385.3 kcal/mol (384.5 without restraints) Performing minimization step: 807. Total energy = 385.1 kcal/mol (384.4 without restraints) Performing minimization step: 808. Total energy = 385 kcal/mol (384.2 without restraints) Performing minimization step: 809. Total energy = 384.8 kcal/mol (384.1 without restraints) Performing minimization step: 810. Total energy = 384.7 kcal/mol (383.9 without restraints) Performing minimization step: 811. Total energy = 384.5 kcal/mol (383.8 without restraints) Performing minimization step: 812. Total energy = 384.4 kcal/mol (383.6 without restraints) Performing minimization step: 813. Total energy = 384.2 kcal/mol (383.5 without restraints) Performing minimization step: 814. Total energy = 384.1 kcal/mol (383.3 without restraints) Performing minimization step: 815. Total energy = 383.9 kcal/mol (383.2 without restraints) Performing minimization step: 816. Total energy = 383.8 kcal/mol (383 without restraints) Performing minimization step: 817. Total energy = 383.6 kcal/mol (382.9 without restraints) Performing minimization step: 818. Total energy = 383.5 kcal/mol (382.7 without restraints) Performing minimization step: 819. Total energy = 383.3 kcal/mol (382.6 without restraints) Performing minimization step: 820. Total energy = 383.2 kcal/mol (382.5 without restraints) Performing minimization step: 821. Total energy = 383 kcal/mol (382.3 without restraints) Performing minimization step: 822. Total energy = 382.9 kcal/mol (382.2 without restraints) Performing minimization step: 823. Total energy = 382.8 kcal/mol (382 without restraints) Performing minimization step: 824. Total energy = 382.6 kcal/mol (381.9 without restraints) Performing minimization step: 825. Total energy = 382.5 kcal/mol (381.7 without restraints) Performing minimization step: 826. Total energy = 382.3 kcal/mol (381.6 without restraints) Performing minimization step: 827. Total energy = 382.2 kcal/mol (381.4 without restraints) Performing minimization step: 828. Total energy = 382 kcal/mol (381.3 without restraints) Performing minimization step: 829. Total energy = 381.9 kcal/mol (381.1 without restraints) Performing minimization step: 830. Total energy = 381.7 kcal/mol (381 without restraints) Performing minimization step: 831. Total energy = 381.6 kcal/mol (380.8 without restraints) Performing minimization step: 832. Total energy = 381.4 kcal/mol (380.7 without restraints) Performing minimization step: 833. Total energy = 381.3 kcal/mol (380.6 without restraints) Performing minimization step: 834. Total energy = 381.2 kcal/mol (380.4 without restraints) Performing minimization step: 835. Total energy = 381 kcal/mol (380.3 without restraints) Performing minimization step: 836. Total energy = 380.9 kcal/mol (380.1 without restraints) Performing minimization step: 837. Total energy = 380.7 kcal/mol (380 without restraints) Performing minimization step: 838. Total energy = 380.6 kcal/mol (379.8 without restraints) Performing minimization step: 839. Total energy = 380.4 kcal/mol (379.7 without restraints) Performing minimization step: 840. Total energy = 380.3 kcal/mol (379.6 without restraints) Performing minimization step: 841. Total energy = 380.2 kcal/mol (379.4 without restraints) Performing minimization step: 842. Total energy = 380 kcal/mol (379.3 without restraints) Performing minimization step: 843. Total energy = 379.9 kcal/mol (379.1 without restraints) Performing minimization step: 844. Total energy = 379.7 kcal/mol (379 without restraints) Performing minimization step: 845. Total energy = 379.6 kcal/mol (378.9 without restraints) Performing minimization step: 846. Total energy = 379.4 kcal/mol (378.7 without restraints) Performing minimization step: 847. Total energy = 379.3 kcal/mol (378.6 without restraints) Performing minimization step: 848. Total energy = 379.2 kcal/mol (378.4 without restraints) Performing minimization step: 849. Total energy = 379 kcal/mol (378.3 without restraints) Performing minimization step: 850. Total energy = 378.9 kcal/mol (378.2 without restraints) Performing minimization step: 851. Total energy = 378.7 kcal/mol (378 without restraints) Performing minimization step: 852. Total energy = 378.6 kcal/mol (377.9 without restraints) Performing minimization step: 853. Total energy = 378.5 kcal/mol (377.7 without restraints) Performing minimization step: 854. Total energy = 378.3 kcal/mol (377.6 without restraints) Performing minimization step: 855. Total energy = 378.2 kcal/mol (377.5 without restraints) Performing minimization step: 856. Total energy = 378 kcal/mol (377.3 without restraints) Performing minimization step: 857. Total energy = 377.9 kcal/mol (377.2 without restraints) Performing minimization step: 858. Total energy = 377.8 kcal/mol (377.1 without restraints) Performing minimization step: 859. Total energy = 377.6 kcal/mol (376.9 without restraints) Performing minimization step: 860. Total energy = 377.5 kcal/mol (376.8 without restraints) Performing minimization step: 861. Total energy = 377.4 kcal/mol (376.7 without restraints) Performing minimization step: 862. Total energy = 377.2 kcal/mol (376.5 without restraints) Performing minimization step: 863. Total energy = 377.1 kcal/mol (376.4 without restraints) Performing minimization step: 864. Total energy = 377 kcal/mol (376.2 without restraints) Performing minimization step: 865. Total energy = 376.8 kcal/mol (376.1 without restraints) Performing minimization step: 866. Total energy = 376.7 kcal/mol (376 without restraints) Performing minimization step: 867. Total energy = 376.5 kcal/mol (375.8 without restraints) Performing minimization step: 868. Total energy = 376.4 kcal/mol (375.7 without restraints) Performing minimization step: 869. Total energy = 376.3 kcal/mol (375.6 without restraints) Performing minimization step: 870. Total energy = 376.1 kcal/mol (375.4 without restraints) Performing minimization step: 871. Total energy = 376 kcal/mol (375.3 without restraints) Performing minimization step: 872. Total energy = 375.9 kcal/mol (375.2 without restraints) Performing minimization step: 873. Total energy = 375.7 kcal/mol (375 without restraints) Performing minimization step: 874. Total energy = 375.6 kcal/mol (374.9 without restraints) Performing minimization step: 875. Total energy = 375.5 kcal/mol (374.8 without restraints) Performing minimization step: 876. Total energy = 375.3 kcal/mol (374.6 without restraints) Performing minimization step: 877. Total energy = 375.2 kcal/mol (374.5 without restraints) Performing minimization step: 878. Total energy = 375.1 kcal/mol (374.4 without restraints) Performing minimization step: 879. Total energy = 374.9 kcal/mol (374.2 without restraints) Performing minimization step: 880. Total energy = 374.8 kcal/mol (374.1 without restraints) Performing minimization step: 881. Total energy = 374.7 kcal/mol (374 without restraints) Performing minimization step: 882. Total energy = 374.5 kcal/mol (373.9 without restraints) Performing minimization step: 883. Total energy = 374.4 kcal/mol (373.7 without restraints) Performing minimization step: 884. Total energy = 374.3 kcal/mol (373.6 without restraints) Performing minimization step: 885. Total energy = 374.2 kcal/mol (373.5 without restraints) Performing minimization step: 886. Total energy = 374 kcal/mol (373.3 without restraints) Performing minimization step: 887. Total energy = 373.9 kcal/mol (373.2 without restraints) Performing minimization step: 888. Total energy = 373.8 kcal/mol (373.1 without restraints) Performing minimization step: 889. Total energy = 373.6 kcal/mol (372.9 without restraints) Performing minimization step: 890. Total energy = 373.5 kcal/mol (372.8 without restraints) Performing minimization step: 891. Total energy = 373.4 kcal/mol (372.7 without restraints) Performing minimization step: 892. Total energy = 373.2 kcal/mol (372.6 without restraints) Performing minimization step: 893. Total energy = 373.1 kcal/mol (372.4 without restraints) Performing minimization step: 894. Total energy = 373 kcal/mol (372.3 without restraints) Performing minimization step: 895. Total energy = 372.9 kcal/mol (372.2 without restraints) Performing minimization step: 896. Total energy = 372.7 kcal/mol (372.1 without restraints) Performing minimization step: 897. Total energy = 372.6 kcal/mol (371.9 without restraints) Performing minimization step: 898. Total energy = 372.5 kcal/mol (371.8 without restraints) Performing minimization step: 899. Total energy = 372.3 kcal/mol (371.7 without restraints) Performing minimization step: 900. Total energy = 372.2 kcal/mol (371.5 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 901. Total energy = 372.1 kcal/mol (371.4 without restraints) Performing minimization step: 902. Total energy = 372 kcal/mol (371.3 without restraints) Performing minimization step: 903. Total energy = 371.8 kcal/mol (371.2 without restraints) Performing minimization step: 904. Total energy = 371.7 kcal/mol (371 without restraints) Performing minimization step: 905. Total energy = 371.6 kcal/mol (370.9 without restraints) Performing minimization step: 906. Total energy = 371.5 kcal/mol (370.8 without restraints) Performing minimization step: 907. Total energy = 371.3 kcal/mol (370.7 without restraints) Performing minimization step: 908. Total energy = 371.2 kcal/mol (370.5 without restraints) Performing minimization step: 909. Total energy = 371.1 kcal/mol (370.4 without restraints) Performing minimization step: 910. Total energy = 371 kcal/mol (370.3 without restraints) Performing minimization step: 911. Total energy = 370.8 kcal/mol (370.2 without restraints) Performing minimization step: 912. Total energy = 370.7 kcal/mol (370 without restraints) Performing minimization step: 913. Total energy = 370.6 kcal/mol (369.9 without restraints) Performing minimization step: 914. Total energy = 370.5 kcal/mol (369.8 without restraints) Performing minimization step: 915. Total energy = 370.3 kcal/mol (369.7 without restraints) Performing minimization step: 916. Total energy = 370.2 kcal/mol (369.6 without restraints) Performing minimization step: 917. Total energy = 370.1 kcal/mol (369.4 without restraints) Performing minimization step: 918. Total energy = 370 kcal/mol (369.3 without restraints) Performing minimization step: 919. Total energy = 369.8 kcal/mol (369.2 without restraints) Performing minimization step: 920. Total energy = 369.7 kcal/mol (369.1 without restraints) Performing minimization step: 921. Total energy = 369.6 kcal/mol (368.9 without restraints) Performing minimization step: 922. Total energy = 369.5 kcal/mol (368.8 without restraints) Performing minimization step: 923. Total energy = 369.4 kcal/mol (368.7 without restraints) Performing minimization step: 924. Total energy = 369.2 kcal/mol (368.6 without restraints) Performing minimization step: 925. Total energy = 369.1 kcal/mol (368.5 without restraints) Performing minimization step: 926. Total energy = 369 kcal/mol (368.3 without restraints) Performing minimization step: 927. Total energy = 368.9 kcal/mol (368.2 without restraints) Performing minimization step: 928. Total energy = 368.7 kcal/mol (368.1 without restraints) Performing minimization step: 929. Total energy = 368.6 kcal/mol (368 without restraints) Performing minimization step: 930. Total energy = 368.5 kcal/mol (367.9 without restraints) Performing minimization step: 931. Total energy = 368.4 kcal/mol (367.7 without restraints) Performing minimization step: 932. Total energy = 368.3 kcal/mol (367.6 without restraints) Performing minimization step: 933. Total energy = 368.1 kcal/mol (367.5 without restraints) Performing minimization step: 934. Total energy = 368 kcal/mol (367.4 without restraints) Performing minimization step: 935. Total energy = 367.9 kcal/mol (367.3 without restraints) Performing minimization step: 936. Total energy = 367.8 kcal/mol (367.1 without restraints) Performing minimization step: 937. Total energy = 367.7 kcal/mol (367 without restraints) Performing minimization step: 938. Total energy = 367.5 kcal/mol (366.9 without restraints) Performing minimization step: 939. Total energy = 367.4 kcal/mol (366.8 without restraints) Performing minimization step: 940. Total energy = 367.3 kcal/mol (366.7 without restraints) Performing minimization step: 941. Total energy = 367.2 kcal/mol (366.5 without restraints) Performing minimization step: 942. Total energy = 367.1 kcal/mol (366.4 without restraints) Performing minimization step: 943. Total energy = 367 kcal/mol (366.3 without restraints) Performing minimization step: 944. Total energy = 366.8 kcal/mol (366.2 without restraints) Performing minimization step: 945. Total energy = 366.7 kcal/mol (366.1 without restraints) Performing minimization step: 946. Total energy = 366.6 kcal/mol (366 without restraints) Performing minimization step: 947. Total energy = 366.5 kcal/mol (365.8 without restraints) Performing minimization step: 948. Total energy = 366.4 kcal/mol (365.7 without restraints) Performing minimization step: 949. Total energy = 366.3 kcal/mol (365.6 without restraints) Performing minimization step: 950. Total energy = 366.1 kcal/mol (365.5 without restraints) Performing minimization step: 951. Total energy = 366 kcal/mol (365.4 without restraints) Performing minimization step: 952. Total energy = 365.9 kcal/mol (365.3 without restraints) Performing minimization step: 953. Total energy = 365.8 kcal/mol (365.2 without restraints) Performing minimization step: 954. Total energy = 365.7 kcal/mol (365 without restraints) Performing minimization step: 955. Total energy = 365.6 kcal/mol (364.9 without restraints) Performing minimization step: 956. Total energy = 365.4 kcal/mol (364.8 without restraints) Performing minimization step: 957. Total energy = 365.3 kcal/mol (364.7 without restraints) Performing minimization step: 958. Total energy = 365.2 kcal/mol (364.6 without restraints) Performing minimization step: 959. Total energy = 365.1 kcal/mol (364.5 without restraints) Performing minimization step: 960. Total energy = 365 kcal/mol (364.4 without restraints) Performing minimization step: 961. Total energy = 364.9 kcal/mol (364.2 without restraints) Performing minimization step: 962. Total energy = 364.8 kcal/mol (364.1 without restraints) Performing minimization step: 963. Total energy = 364.6 kcal/mol (364 without restraints) Performing minimization step: 964. Total energy = 364.5 kcal/mol (363.9 without restraints) Performing minimization step: 965. Total energy = 364.4 kcal/mol (363.8 without restraints) Performing minimization step: 966. Total energy = 364.3 kcal/mol (363.7 without restraints) Performing minimization step: 967. Total energy = 364.2 kcal/mol (363.6 without restraints) Performing minimization step: 968. Total energy = 364.1 kcal/mol (363.4 without restraints) Performing minimization step: 969. Total energy = 364 kcal/mol (363.3 without restraints) Performing minimization step: 970. Total energy = 363.8 kcal/mol (363.2 without restraints) Performing minimization step: 971. Total energy = 363.7 kcal/mol (363.1 without restraints) Performing minimization step: 972. Total energy = 363.6 kcal/mol (363 without restraints) Performing minimization step: 973. Total energy = 363.5 kcal/mol (362.9 without restraints) Performing minimization step: 974. Total energy = 363.4 kcal/mol (362.8 without restraints) Performing minimization step: 975. Total energy = 363.3 kcal/mol (362.7 without restraints) Performing minimization step: 976. Total energy = 363.2 kcal/mol (362.6 without restraints) Performing minimization step: 977. Total energy = 363.1 kcal/mol (362.4 without restraints) Performing minimization step: 978. Total energy = 363 kcal/mol (362.3 without restraints) Performing minimization step: 979. Total energy = 362.8 kcal/mol (362.2 without restraints) Performing minimization step: 980. Total energy = 362.7 kcal/mol (362.1 without restraints) Performing minimization step: 981. Total energy = 362.6 kcal/mol (362 without restraints) Performing minimization step: 982. Total energy = 362.5 kcal/mol (361.9 without restraints) Performing minimization step: 983. Total energy = 362.4 kcal/mol (361.8 without restraints) Performing minimization step: 984. Total energy = 362.3 kcal/mol (361.7 without restraints) Performing minimization step: 985. Total energy = 362.2 kcal/mol (361.6 without restraints) Performing minimization step: 986. Total energy = 362.1 kcal/mol (361.5 without restraints) Performing minimization step: 987. Total energy = 362 kcal/mol (361.3 without restraints) Performing minimization step: 988. Total energy = 361.8 kcal/mol (361.2 without restraints) Performing minimization step: 989. Total energy = 361.7 kcal/mol (361.1 without restraints) Performing minimization step: 990. Total energy = 361.6 kcal/mol (361 without restraints) Performing minimization step: 991. Total energy = 361.5 kcal/mol (360.9 without restraints) Performing minimization step: 992. Total energy = 361.4 kcal/mol (360.8 without restraints) Performing minimization step: 993. Total energy = 361.3 kcal/mol (360.7 without restraints) Performing minimization step: 994. Total energy = 361.2 kcal/mol (360.6 without restraints) Performing minimization step: 995. Total energy = 361.1 kcal/mol (360.5 without restraints) Performing minimization step: 996. Total energy = 361 kcal/mol (360.4 without restraints) Performing minimization step: 997. Total energy = 360.9 kcal/mol (360.3 without restraints) Performing minimization step: 998. Total energy = 360.8 kcal/mol (360.2 without restraints) Performing minimization step: 999. Total energy = 360.7 kcal/mol (360.1 without restraints) Performing minimization step: 1000. Total energy = 360.5 kcal/mol (359.9 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 360.4 kcal/mol (359.8 without restraints) Performing minimization step: 1002. Total energy = 360.3 kcal/mol (359.7 without restraints) Performing minimization step: 1003. Total energy = 360.2 kcal/mol (359.6 without restraints) Performing minimization step: 1004. Total energy = 360.1 kcal/mol (359.5 without restraints) Performing minimization step: 1005. Total energy = 360 kcal/mol (359.4 without restraints) Performing minimization step: 1006. Total energy = 359.9 kcal/mol (359.3 without restraints) Performing minimization step: 1007. Total energy = 359.8 kcal/mol (359.2 without restraints) Performing minimization step: 1008. Total energy = 359.7 kcal/mol (359.1 without restraints) Performing minimization step: 1009. Total energy = 359.6 kcal/mol (359 without restraints) Performing minimization step: 1010. Total energy = 359.5 kcal/mol (358.9 without restraints) Performing minimization step: 1011. Total energy = 359.4 kcal/mol (358.8 without restraints) Performing minimization step: 1012. Total energy = 359.3 kcal/mol (358.7 without restraints) Performing minimization step: 1013. Total energy = 359.2 kcal/mol (358.6 without restraints) Performing minimization step: 1014. Total energy = 359.1 kcal/mol (358.5 without restraints) Performing minimization step: 1015. Total energy = 359 kcal/mol (358.4 without restraints) Performing minimization step: 1016. Total energy = 358.9 kcal/mol (358.3 without restraints) Performing minimization step: 1017. Total energy = 358.8 kcal/mol (358.2 without restraints) Performing minimization step: 1018. Total energy = 358.6 kcal/mol (358.1 without restraints) Performing minimization step: 1019. Total energy = 358.5 kcal/mol (358 without restraints) Performing minimization step: 1020. Total energy = 358.4 kcal/mol (357.9 without restraints) Performing minimization step: 1021. Total energy = 358.3 kcal/mol (357.7 without restraints) Performing minimization step: 1022. Total energy = 358.2 kcal/mol (357.6 without restraints) Performing minimization step: 1023. Total energy = 358.1 kcal/mol (357.5 without restraints) Performing minimization step: 1024. Total energy = 358 kcal/mol (357.4 without restraints) Performing minimization step: 1025. Total energy = 357.9 kcal/mol (357.3 without restraints) Performing minimization step: 1026. Total energy = 357.8 kcal/mol (357.2 without restraints) Performing minimization step: 1027. Total energy = 357.7 kcal/mol (357.1 without restraints) Performing minimization step: 1028. Total energy = 357.6 kcal/mol (357 without restraints) Performing minimization step: 1029. Total energy = 357.5 kcal/mol (356.9 without restraints) Performing minimization step: 1030. Total energy = 357.4 kcal/mol (356.8 without restraints) Performing minimization step: 1031. Total energy = 357.3 kcal/mol (356.7 without restraints) Performing minimization step: 1032. Total energy = 357.2 kcal/mol (356.6 without restraints) Performing minimization step: 1033. Total energy = 357.1 kcal/mol (356.5 without restraints) Performing minimization step: 1034. Total energy = 357 kcal/mol (356.4 without restraints) Performing minimization step: 1035. Total energy = 356.9 kcal/mol (356.3 without restraints) Performing minimization step: 1036. Total energy = 356.8 kcal/mol (356.2 without restraints) Performing minimization step: 1037. Total energy = 356.7 kcal/mol (356.1 without restraints) Performing minimization step: 1038. Total energy = 356.6 kcal/mol (356 without restraints) Performing minimization step: 1039. Total energy = 356.5 kcal/mol (355.9 without restraints) Performing minimization step: 1040. Total energy = 356.4 kcal/mol (355.8 without restraints) Performing minimization step: 1041. Total energy = 356.3 kcal/mol (355.7 without restraints) Performing minimization step: 1042. Total energy = 356.2 kcal/mol (355.6 without restraints) Performing minimization step: 1043. Total energy = 356.1 kcal/mol (355.5 without restraints) Performing minimization step: 1044. Total energy = 356 kcal/mol (355.4 without restraints) Performing minimization step: 1045. Total energy = 355.9 kcal/mol (355.3 without restraints) Performing minimization step: 1046. Total energy = 355.8 kcal/mol (355.2 without restraints) Performing minimization step: 1047. Total energy = 355.7 kcal/mol (355.1 without restraints) Performing minimization step: 1048. Total energy = 355.6 kcal/mol (355 without restraints) Performing minimization step: 1049. Total energy = 355.5 kcal/mol (354.9 without restraints) Performing minimization step: 1050. Total energy = 355.4 kcal/mol (354.8 without restraints) Performing minimization step: 1051. Total energy = 355.3 kcal/mol (354.7 without restraints) Performing minimization step: 1052. Total energy = 355.2 kcal/mol (354.6 without restraints) Performing minimization step: 1053. Total energy = 355.1 kcal/mol (354.5 without restraints) Performing minimization step: 1054. Total energy = 355 kcal/mol (354.4 without restraints) Performing minimization step: 1055. Total energy = 354.9 kcal/mol (354.3 without restraints) Performing minimization step: 1056. Total energy = 354.8 kcal/mol (354.2 without restraints) Performing minimization step: 1057. Total energy = 354.7 kcal/mol (354.1 without restraints) Performing minimization step: 1058. Total energy = 354.6 kcal/mol (354 without restraints) Performing minimization step: 1059. Total energy = 354.5 kcal/mol (353.9 without restraints) Performing minimization step: 1060. Total energy = 354.4 kcal/mol (353.9 without restraints) Performing minimization step: 1061. Total energy = 354.3 kcal/mol (353.8 without restraints) Performing minimization step: 1062. Total energy = 354.2 kcal/mol (353.7 without restraints) Performing minimization step: 1063. Total energy = 354.1 kcal/mol (353.6 without restraints) Performing minimization step: 1064. Total energy = 354 kcal/mol (353.5 without restraints) Performing minimization step: 1065. Total energy = 353.9 kcal/mol (353.4 without restraints) Performing minimization step: 1066. Total energy = 353.8 kcal/mol (353.3 without restraints) Performing minimization step: 1067. Total energy = 353.7 kcal/mol (353.2 without restraints) Performing minimization step: 1068. Total energy = 353.6 kcal/mol (353.1 without restraints) Performing minimization step: 1069. Total energy = 353.5 kcal/mol (353 without restraints) Performing minimization step: 1070. Total energy = 353.4 kcal/mol (352.9 without restraints) Performing minimization step: 1071. Total energy = 353.4 kcal/mol (352.8 without restraints) Performing minimization step: 1072. Total energy = 353.3 kcal/mol (352.7 without restraints) Performing minimization step: 1073. Total energy = 353.2 kcal/mol (352.6 without restraints) Performing minimization step: 1074. Total energy = 353.1 kcal/mol (352.5 without restraints) Performing minimization step: 1075. Total energy = 353 kcal/mol (352.4 without restraints) Performing minimization step: 1076. Total energy = 352.9 kcal/mol (352.3 without restraints) Performing minimization step: 1077. Total energy = 352.8 kcal/mol (352.2 without restraints) Performing minimization step: 1078. Total energy = 352.7 kcal/mol (352.1 without restraints) Performing minimization step: 1079. Total energy = 352.6 kcal/mol (352 without restraints) Performing minimization step: 1080. Total energy = 352.5 kcal/mol (351.9 without restraints) Performing minimization step: 1081. Total energy = 352.4 kcal/mol (351.8 without restraints) Performing minimization step: 1082. Total energy = 352.3 kcal/mol (351.8 without restraints) Performing minimization step: 1083. Total energy = 352.2 kcal/mol (351.7 without restraints) Performing minimization step: 1084. Total energy = 352.1 kcal/mol (351.6 without restraints) Performing minimization step: 1085. Total energy = 352 kcal/mol (351.5 without restraints) Performing minimization step: 1086. Total energy = 351.9 kcal/mol (351.4 without restraints) Performing minimization step: 1087. Total energy = 351.8 kcal/mol (351.3 without restraints) Performing minimization step: 1088. Total energy = 351.7 kcal/mol (351.2 without restraints) Performing minimization step: 1089. Total energy = 351.6 kcal/mol (351.1 without restraints) Performing minimization step: 1090. Total energy = 351.6 kcal/mol (351 without restraints) Performing minimization step: 1091. Total energy = 351.5 kcal/mol (350.9 without restraints) Performing minimization step: 1092. Total energy = 351.4 kcal/mol (350.8 without restraints) Performing minimization step: 1093. Total energy = 351.3 kcal/mol (350.7 without restraints) Performing minimization step: 1094. Total energy = 351.2 kcal/mol (350.6 without restraints) Performing minimization step: 1095. Total energy = 351.1 kcal/mol (350.5 without restraints) Performing minimization step: 1096. Total energy = 351 kcal/mol (350.5 without restraints) Performing minimization step: 1097. Total energy = 350.9 kcal/mol (350.4 without restraints) Performing minimization step: 1098. Total energy = 350.8 kcal/mol (350.3 without restraints) Performing minimization step: 1099. Total energy = 350.7 kcal/mol (350.2 without restraints) Performing minimization step: 1100. Total energy = 350.6 kcal/mol (350.1 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 350.5 kcal/mol (350 without restraints) Performing minimization step: 1102. Total energy = 350.4 kcal/mol (349.9 without restraints) Performing minimization step: 1103. Total energy = 350.4 kcal/mol (349.8 without restraints) Performing minimization step: 1104. Total energy = 350.3 kcal/mol (349.7 without restraints) Performing minimization step: 1105. Total energy = 350.2 kcal/mol (349.6 without restraints) Performing minimization step: 1106. Total energy = 350.1 kcal/mol (349.5 without restraints) Performing minimization step: 1107. Total energy = 350 kcal/mol (349.4 without restraints) Performing minimization step: 1108. Total energy = 349.9 kcal/mol (349.4 without restraints) Performing minimization step: 1109. Total energy = 349.8 kcal/mol (349.3 without restraints) Performing minimization step: 1110. Total energy = 349.7 kcal/mol (349.2 without restraints) Performing minimization step: 1111. Total energy = 349.6 kcal/mol (349.1 without restraints) Performing minimization step: 1112. Total energy = 349.5 kcal/mol (349 without restraints) Performing minimization step: 1113. Total energy = 349.4 kcal/mol (348.9 without restraints) Performing minimization step: 1114. Total energy = 349.4 kcal/mol (348.8 without restraints) Performing minimization step: 1115. Total energy = 349.3 kcal/mol (348.7 without restraints) Performing minimization step: 1116. Total energy = 349.2 kcal/mol (348.6 without restraints) Performing minimization step: 1117. Total energy = 349.1 kcal/mol (348.5 without restraints) Performing minimization step: 1118. Total energy = 349 kcal/mol (348.5 without restraints) Performing minimization step: 1119. Total energy = 348.9 kcal/mol (348.4 without restraints) Performing minimization step: 1120. Total energy = 348.8 kcal/mol (348.3 without restraints) Performing minimization step: 1121. Total energy = 348.7 kcal/mol (348.2 without restraints) Performing minimization step: 1122. Total energy = 348.6 kcal/mol (348.1 without restraints) Performing minimization step: 1123. Total energy = 348.5 kcal/mol (348 without restraints) Performing minimization step: 1124. Total energy = 348.5 kcal/mol (347.9 without restraints) Performing minimization step: 1125. Total energy = 348.4 kcal/mol (347.8 without restraints) Performing minimization step: 1126. Total energy = 348.3 kcal/mol (347.8 without restraints) Performing minimization step: 1127. Total energy = 348.2 kcal/mol (347.7 without restraints) Performing minimization step: 1128. Total energy = 348.1 kcal/mol (347.6 without restraints) Performing minimization step: 1129. Total energy = 348 kcal/mol (347.5 without restraints) Performing minimization step: 1130. Total energy = 347.9 kcal/mol (347.4 without restraints) Performing minimization step: 1131. Total energy = 347.8 kcal/mol (347.3 without restraints) Performing minimization step: 1132. Total energy = 347.8 kcal/mol (347.2 without restraints) Performing minimization step: 1133. Total energy = 347.7 kcal/mol (347.1 without restraints) Performing minimization step: 1134. Total energy = 347.6 kcal/mol (347 without restraints) Performing minimization step: 1135. Total energy = 347.5 kcal/mol (347 without restraints) Performing minimization step: 1136. Total energy = 347.4 kcal/mol (346.9 without restraints) Performing minimization step: 1137. Total energy = 347.3 kcal/mol (346.8 without restraints) Performing minimization step: 1138. Total energy = 347.2 kcal/mol (346.7 without restraints) Performing minimization step: 1139. Total energy = 347.1 kcal/mol (346.6 without restraints) Performing minimization step: 1140. Total energy = 347.1 kcal/mol (346.5 without restraints) Performing minimization step: 1141. Total energy = 347 kcal/mol (346.4 without restraints) Performing minimization step: 1142. Total energy = 346.9 kcal/mol (346.4 without restraints) Performing minimization step: 1143. Total energy = 346.8 kcal/mol (346.3 without restraints) Performing minimization step: 1144. Total energy = 346.7 kcal/mol (346.2 without restraints) Performing minimization step: 1145. Total energy = 346.6 kcal/mol (346.1 without restraints) Performing minimization step: 1146. Total energy = 346.5 kcal/mol (346 without restraints) Performing minimization step: 1147. Total energy = 346.4 kcal/mol (345.9 without restraints) Performing minimization step: 1148. Total energy = 346.4 kcal/mol (345.8 without restraints) Performing minimization step: 1149. Total energy = 346.3 kcal/mol (345.8 without restraints) Performing minimization step: 1150. Total energy = 346.2 kcal/mol (345.7 without restraints) Performing minimization step: 1151. Total energy = 346.1 kcal/mol (345.6 without restraints) Performing minimization step: 1152. Total energy = 346 kcal/mol (345.5 without restraints) Performing minimization step: 1153. Total energy = 345.9 kcal/mol (345.4 without restraints) Performing minimization step: 1154. Total energy = 345.8 kcal/mol (345.3 without restraints) Performing minimization step: 1155. Total energy = 345.8 kcal/mol (345.2 without restraints) Performing minimization step: 1156. Total energy = 345.7 kcal/mol (345.2 without restraints) Performing minimization step: 1157. Total energy = 345.6 kcal/mol (345.1 without restraints) Performing minimization step: 1158. Total energy = 345.5 kcal/mol (345 without restraints) Performing minimization step: 1159. Total energy = 345.4 kcal/mol (344.9 without restraints) Performing minimization step: 1160. Total energy = 345.3 kcal/mol (344.8 without restraints) Performing minimization step: 1161. Total energy = 345.3 kcal/mol (344.7 without restraints) Performing minimization step: 1162. Total energy = 345.2 kcal/mol (344.7 without restraints) Performing minimization step: 1163. Total energy = 345.1 kcal/mol (344.6 without restraints) Performing minimization step: 1164. Total energy = 345 kcal/mol (344.5 without restraints) Performing minimization step: 1165. Total energy = 344.9 kcal/mol (344.4 without restraints) Performing minimization step: 1166. Total energy = 344.8 kcal/mol (344.3 without restraints) Performing minimization step: 1167. Total energy = 344.7 kcal/mol (344.2 without restraints) Performing minimization step: 1168. Total energy = 344.7 kcal/mol (344.1 without restraints) Performing minimization step: 1169. Total energy = 344.6 kcal/mol (344.1 without restraints) Performing minimization step: 1170. Total energy = 344.5 kcal/mol (344 without restraints) Performing minimization step: 1171. Total energy = 344.4 kcal/mol (343.9 without restraints) Performing minimization step: 1172. Total energy = 344.3 kcal/mol (343.8 without restraints) Performing minimization step: 1173. Total energy = 344.2 kcal/mol (343.7 without restraints) Performing minimization step: 1174. Total energy = 344.2 kcal/mol (343.7 without restraints) Performing minimization step: 1175. Total energy = 344.1 kcal/mol (343.6 without restraints) Performing minimization step: 1176. Total energy = 344 kcal/mol (343.5 without restraints) Performing minimization step: 1177. Total energy = 343.9 kcal/mol (343.4 without restraints) Performing minimization step: 1178. Total energy = 343.8 kcal/mol (343.3 without restraints) Performing minimization step: 1179. Total energy = 343.7 kcal/mol (343.2 without restraints) Performing minimization step: 1180. Total energy = 343.7 kcal/mol (343.2 without restraints) Performing minimization step: 1181. Total energy = 343.6 kcal/mol (343.1 without restraints) Performing minimization step: 1182. Total energy = 343.5 kcal/mol (343 without restraints) Performing minimization step: 1183. Total energy = 343.4 kcal/mol (342.9 without restraints) Performing minimization step: 1184. Total energy = 343.3 kcal/mol (342.8 without restraints) Performing minimization step: 1185. Total energy = 343.3 kcal/mol (342.7 without restraints) Performing minimization step: 1186. Total energy = 343.2 kcal/mol (342.7 without restraints) Performing minimization step: 1187. Total energy = 343.1 kcal/mol (342.6 without restraints) Performing minimization step: 1188. Total energy = 343 kcal/mol (342.5 without restraints) Performing minimization step: 1189. Total energy = 342.9 kcal/mol (342.4 without restraints) Performing minimization step: 1190. Total energy = 342.8 kcal/mol (342.3 without restraints) Performing minimization step: 1191. Total energy = 342.8 kcal/mol (342.3 without restraints) Performing minimization step: 1192. Total energy = 342.7 kcal/mol (342.2 without restraints) Performing minimization step: 1193. Total energy = 342.6 kcal/mol (342.1 without restraints) Performing minimization step: 1194. Total energy = 342.5 kcal/mol (342 without restraints) Performing minimization step: 1195. Total energy = 342.4 kcal/mol (341.9 without restraints) Performing minimization step: 1196. Total energy = 342.4 kcal/mol (341.9 without restraints) Performing minimization step: 1197. Total energy = 342.3 kcal/mol (341.8 without restraints) Performing minimization step: 1198. Total energy = 342.2 kcal/mol (341.7 without restraints) Performing minimization step: 1199. Total energy = 342.1 kcal/mol (341.6 without restraints) Performing minimization step: 1200. Total energy = 342 kcal/mol (341.5 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 342 kcal/mol (341.5 without restraints) Performing minimization step: 1202. Total energy = 341.9 kcal/mol (341.4 without restraints) Performing minimization step: 1203. Total energy = 341.8 kcal/mol (341.3 without restraints) Performing minimization step: 1204. Total energy = 341.7 kcal/mol (341.2 without restraints) Performing minimization step: 1205. Total energy = 341.6 kcal/mol (341.1 without restraints) Performing minimization step: 1206. Total energy = 341.6 kcal/mol (341.1 without restraints) Performing minimization step: 1207. Total energy = 341.5 kcal/mol (341 without restraints) Performing minimization step: 1208. Total energy = 341.4 kcal/mol (340.9 without restraints) Performing minimization step: 1209. Total energy = 341.3 kcal/mol (340.8 without restraints) Performing minimization step: 1210. Total energy = 341.2 kcal/mol (340.7 without restraints) Performing minimization step: 1211. Total energy = 341.2 kcal/mol (340.7 without restraints) Performing minimization step: 1212. Total energy = 341.1 kcal/mol (340.6 without restraints) Performing minimization step: 1213. Total energy = 341 kcal/mol (340.5 without restraints) Performing minimization step: 1214. Total energy = 340.9 kcal/mol (340.4 without restraints) Performing minimization step: 1215. Total energy = 340.8 kcal/mol (340.3 without restraints) Performing minimization step: 1216. Total energy = 340.8 kcal/mol (340.3 without restraints) Performing minimization step: 1217. Total energy = 340.7 kcal/mol (340.2 without restraints) Performing minimization step: 1218. Total energy = 340.6 kcal/mol (340.1 without restraints) Performing minimization step: 1219. Total energy = 340.5 kcal/mol (340 without restraints) Performing minimization step: 1220. Total energy = 340.4 kcal/mol (340 without restraints) Performing minimization step: 1221. Total energy = 340.4 kcal/mol (339.9 without restraints) Performing minimization step: 1222. Total energy = 340.3 kcal/mol (339.8 without restraints) Performing minimization step: 1223. Total energy = 340.2 kcal/mol (339.7 without restraints) Performing minimization step: 1224. Total energy = 340.1 kcal/mol (339.6 without restraints) Performing minimization step: 1225. Total energy = 340.1 kcal/mol (339.6 without restraints) Performing minimization step: 1226. Total energy = 340 kcal/mol (339.5 without restraints) Performing minimization step: 1227. Total energy = 339.9 kcal/mol (339.4 without restraints) Performing minimization step: 1228. Total energy = 339.8 kcal/mol (339.3 without restraints) Performing minimization step: 1229. Total energy = 339.7 kcal/mol (339.3 without restraints) Performing minimization step: 1230. Total energy = 339.7 kcal/mol (339.2 without restraints) Performing minimization step: 1231. Total energy = 339.6 kcal/mol (339.1 without restraints) Performing minimization step: 1232. Total energy = 339.5 kcal/mol (339 without restraints) Performing minimization step: 1233. Total energy = 339.4 kcal/mol (338.9 without restraints) Performing minimization step: 1234. Total energy = 339.4 kcal/mol (338.9 without restraints) Performing minimization step: 1235. Total energy = 339.3 kcal/mol (338.8 without restraints) Performing minimization step: 1236. Total energy = 339.2 kcal/mol (338.7 without restraints) Performing minimization step: 1237. Total energy = 339.1 kcal/mol (338.6 without restraints) Performing minimization step: 1238. Total energy = 339.1 kcal/mol (338.6 without restraints) Performing minimization step: 1239. Total energy = 339 kcal/mol (338.5 without restraints) Performing minimization step: 1240. Total energy = 338.9 kcal/mol (338.4 without restraints) Performing minimization step: 1241. Total energy = 338.8 kcal/mol (338.3 without restraints) Performing minimization step: 1242. Total energy = 338.7 kcal/mol (338.3 without restraints) Performing minimization step: 1243. Total energy = 338.7 kcal/mol (338.2 without restraints) Performing minimization step: 1244. Total energy = 338.6 kcal/mol (338.1 without restraints) Performing minimization step: 1245. Total energy = 338.5 kcal/mol (338 without restraints) Performing minimization step: 1246. Total energy = 338.4 kcal/mol (338 without restraints) Performing minimization step: 1247. Total energy = 338.4 kcal/mol (337.9 without restraints) Performing minimization step: 1248. Total energy = 338.3 kcal/mol (337.8 without restraints) Performing minimization step: 1249. Total energy = 338.2 kcal/mol (337.7 without restraints) Performing minimization step: 1250. Total energy = 338.1 kcal/mol (337.7 without restraints) Performing minimization step: 1251. Total energy = 338.1 kcal/mol (337.6 without restraints) Performing minimization step: 1252. Total energy = 338 kcal/mol (337.5 without restraints) Performing minimization step: 1253. Total energy = 337.9 kcal/mol (337.4 without restraints) Performing minimization step: 1254. Total energy = 337.8 kcal/mol (337.4 without restraints) Performing minimization step: 1255. Total energy = 337.8 kcal/mol (337.3 without restraints) Performing minimization step: 1256. Total energy = 337.7 kcal/mol (337.2 without restraints) Performing minimization step: 1257. Total energy = 337.6 kcal/mol (337.1 without restraints) Performing minimization step: 1258. Total energy = 337.5 kcal/mol (337.1 without restraints) Performing minimization step: 1259. Total energy = 337.5 kcal/mol (337 without restraints) Performing minimization step: 1260. Total energy = 337.4 kcal/mol (336.9 without restraints) Performing minimization step: 1261. Total energy = 337.3 kcal/mol (336.8 without restraints) Performing minimization step: 1262. Total energy = 337.2 kcal/mol (336.8 without restraints) Performing minimization step: 1263. Total energy = 337.2 kcal/mol (336.7 without restraints) Performing minimization step: 1264. Total energy = 337.1 kcal/mol (336.6 without restraints) Performing minimization step: 1265. Total energy = 337 kcal/mol (336.5 without restraints) Performing minimization step: 1266. Total energy = 336.9 kcal/mol (336.5 without restraints) Performing minimization step: 1267. Total energy = 336.9 kcal/mol (336.4 without restraints) Performing minimization step: 1268. Total energy = 336.8 kcal/mol (336.3 without restraints) Performing minimization step: 1269. Total energy = 336.7 kcal/mol (336.2 without restraints) Performing minimization step: 1270. Total energy = 336.6 kcal/mol (336.2 without restraints) Performing minimization step: 1271. Total energy = 336.6 kcal/mol (336.1 without restraints) Performing minimization step: 1272. Total energy = 336.5 kcal/mol (336 without restraints) Performing minimization step: 1273. Total energy = 336.4 kcal/mol (335.9 without restraints) Performing minimization step: 1274. Total energy = 336.3 kcal/mol (335.9 without restraints) Performing minimization step: 1275. Total energy = 336.3 kcal/mol (335.8 without restraints) Performing minimization step: 1276. Total energy = 336.2 kcal/mol (335.7 without restraints) Performing minimization step: 1277. Total energy = 336.1 kcal/mol (335.7 without restraints) Performing minimization step: 1278. Total energy = 336.1 kcal/mol (335.6 without restraints) Performing minimization step: 1279. Total energy = 336 kcal/mol (335.5 without restraints) Performing minimization step: 1280. Total energy = 335.9 kcal/mol (335.4 without restraints) Performing minimization step: 1281. Total energy = 335.8 kcal/mol (335.4 without restraints) Performing minimization step: 1282. Total energy = 335.8 kcal/mol (335.3 without restraints) Performing minimization step: 1283. Total energy = 335.7 kcal/mol (335.2 without restraints) Performing minimization step: 1284. Total energy = 335.6 kcal/mol (335.1 without restraints) Performing minimization step: 1285. Total energy = 335.5 kcal/mol (335.1 without restraints) Performing minimization step: 1286. Total energy = 335.5 kcal/mol (335 without restraints) Performing minimization step: 1287. Total energy = 335.4 kcal/mol (334.9 without restraints) Performing minimization step: 1288. Total energy = 335.3 kcal/mol (334.9 without restraints) Performing minimization step: 1289. Total energy = 335.3 kcal/mol (334.8 without restraints) Performing minimization step: 1290. Total energy = 335.2 kcal/mol (334.7 without restraints) Performing minimization step: 1291. Total energy = 335.1 kcal/mol (334.6 without restraints) Performing minimization step: 1292. Total energy = 335 kcal/mol (334.6 without restraints) Performing minimization step: 1293. Total energy = 335 kcal/mol (334.5 without restraints) Performing minimization step: 1294. Total energy = 334.9 kcal/mol (334.4 without restraints) Performing minimization step: 1295. Total energy = 334.8 kcal/mol (334.4 without restraints) Performing minimization step: 1296. Total energy = 334.7 kcal/mol (334.3 without restraints) Performing minimization step: 1297. Total energy = 334.7 kcal/mol (334.2 without restraints) Performing minimization step: 1298. Total energy = 334.6 kcal/mol (334.1 without restraints) Performing minimization step: 1299. Total energy = 334.5 kcal/mol (334.1 without restraints) Performing minimization step: 1300. Total energy = 334.5 kcal/mol (334 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 334.4 kcal/mol (333.9 without restraints) Performing minimization step: 1302. Total energy = 334.3 kcal/mol (333.9 without restraints) Performing minimization step: 1303. Total energy = 334.2 kcal/mol (333.8 without restraints) Performing minimization step: 1304. Total energy = 334.2 kcal/mol (333.7 without restraints) Performing minimization step: 1305. Total energy = 334.1 kcal/mol (333.6 without restraints) Performing minimization step: 1306. Total energy = 334 kcal/mol (333.6 without restraints) Performing minimization step: 1307. Total energy = 334 kcal/mol (333.5 without restraints) Performing minimization step: 1308. Total energy = 333.9 kcal/mol (333.4 without restraints) Performing minimization step: 1309. Total energy = 333.8 kcal/mol (333.4 without restraints) Performing minimization step: 1310. Total energy = 333.8 kcal/mol (333.3 without restraints) Performing minimization step: 1311. Total energy = 333.7 kcal/mol (333.2 without restraints) Performing minimization step: 1312. Total energy = 333.6 kcal/mol (333.1 without restraints) Performing minimization step: 1313. Total energy = 333.5 kcal/mol (333.1 without restraints) Performing minimization step: 1314. Total energy = 333.5 kcal/mol (333 without restraints) Performing minimization step: 1315. Total energy = 333.4 kcal/mol (332.9 without restraints) Performing minimization step: 1316. Total energy = 333.3 kcal/mol (332.9 without restraints) Performing minimization step: 1317. Total energy = 333.3 kcal/mol (332.8 without restraints) Performing minimization step: 1318. Total energy = 333.2 kcal/mol (332.7 without restraints) Performing minimization step: 1319. Total energy = 333.1 kcal/mol (332.7 without restraints) Performing minimization step: 1320. Total energy = 333 kcal/mol (332.6 without restraints) Performing minimization step: 1321. Total energy = 333 kcal/mol (332.5 without restraints) Performing minimization step: 1322. Total energy = 332.9 kcal/mol (332.5 without restraints) Performing minimization step: 1323. Total energy = 332.8 kcal/mol (332.4 without restraints) Performing minimization step: 1324. Total energy = 332.8 kcal/mol (332.3 without restraints) Performing minimization step: 1325. Total energy = 332.7 kcal/mol (332.2 without restraints) Performing minimization step: 1326. Total energy = 332.6 kcal/mol (332.2 without restraints) Performing minimization step: 1327. Total energy = 332.6 kcal/mol (332.1 without restraints) Performing minimization step: 1328. Total energy = 332.5 kcal/mol (332 without restraints) Performing minimization step: 1329. Total energy = 332.4 kcal/mol (332 without restraints) Performing minimization step: 1330. Total energy = 332.4 kcal/mol (331.9 without restraints) Performing minimization step: 1331. Total energy = 332.3 kcal/mol (331.8 without restraints) Performing minimization step: 1332. Total energy = 332.2 kcal/mol (331.8 without restraints) Performing minimization step: 1333. Total energy = 332.1 kcal/mol (331.7 without restraints) Performing minimization step: 1334. Total energy = 332.1 kcal/mol (331.6 without restraints) Performing minimization step: 1335. Total energy = 332 kcal/mol (331.6 without restraints) Performing minimization step: 1336. Total energy = 331.9 kcal/mol (331.5 without restraints) Performing minimization step: 1337. Total energy = 331.9 kcal/mol (331.4 without restraints) Performing minimization step: 1338. Total energy = 331.8 kcal/mol (331.3 without restraints) Performing minimization step: 1339. Total energy = 331.7 kcal/mol (331.3 without restraints) Performing minimization step: 1340. Total energy = 331.7 kcal/mol (331.2 without restraints) Performing minimization step: 1341. Total energy = 331.6 kcal/mol (331.1 without restraints) Performing minimization step: 1342. Total energy = 331.5 kcal/mol (331.1 without restraints) Performing minimization step: 1343. Total energy = 331.5 kcal/mol (331 without restraints) Performing minimization step: 1344. Total energy = 331.4 kcal/mol (330.9 without restraints) Performing minimization step: 1345. Total energy = 331.3 kcal/mol (330.9 without restraints) Performing minimization step: 1346. Total energy = 331.3 kcal/mol (330.8 without restraints) Performing minimization step: 1347. Total energy = 331.2 kcal/mol (330.7 without restraints) Performing minimization step: 1348. Total energy = 331.1 kcal/mol (330.7 without restraints) Performing minimization step: 1349. Total energy = 331.1 kcal/mol (330.6 without restraints) Performing minimization step: 1350. Total energy = 331 kcal/mol (330.5 without restraints) Performing minimization step: 1351. Total energy = 330.9 kcal/mol (330.5 without restraints) Performing minimization step: 1352. Total energy = 330.9 kcal/mol (330.4 without restraints) Performing minimization step: 1353. Total energy = 330.8 kcal/mol (330.3 without restraints) Performing minimization step: 1354. Total energy = 330.7 kcal/mol (330.3 without restraints) Performing minimization step: 1355. Total energy = 330.6 kcal/mol (330.2 without restraints) Performing minimization step: 1356. Total energy = 330.6 kcal/mol (330.1 without restraints) Performing minimization step: 1357. Total energy = 330.5 kcal/mol (330.1 without restraints) Performing minimization step: 1358. Total energy = 330.4 kcal/mol (330 without restraints) Performing minimization step: 1359. Total energy = 330.4 kcal/mol (329.9 without restraints) Performing minimization step: 1360. Total energy = 330.3 kcal/mol (329.9 without restraints) Performing minimization step: 1361. Total energy = 330.2 kcal/mol (329.8 without restraints) Performing minimization step: 1362. Total energy = 330.2 kcal/mol (329.7 without restraints) Performing minimization step: 1363. Total energy = 330.1 kcal/mol (329.7 without restraints) Performing minimization step: 1364. Total energy = 330 kcal/mol (329.6 without restraints) Performing minimization step: 1365. Total energy = 330 kcal/mol (329.5 without restraints) Performing minimization step: 1366. Total energy = 329.9 kcal/mol (329.5 without restraints) Performing minimization step: 1367. Total energy = 329.8 kcal/mol (329.4 without restraints) Performing minimization step: 1368. Total energy = 329.8 kcal/mol (329.3 without restraints) Performing minimization step: 1369. Total energy = 329.7 kcal/mol (329.3 without restraints) Performing minimization step: 1370. Total energy = 329.6 kcal/mol (329.2 without restraints) Performing minimization step: 1371. Total energy = 329.6 kcal/mol (329.1 without restraints) Performing minimization step: 1372. Total energy = 329.5 kcal/mol (329.1 without restraints) Performing minimization step: 1373. Total energy = 329.5 kcal/mol (329 without restraints) Performing minimization step: 1374. Total energy = 329.4 kcal/mol (328.9 without restraints) Performing minimization step: 1375. Total energy = 329.3 kcal/mol (328.9 without restraints) Performing minimization step: 1376. Total energy = 329.3 kcal/mol (328.8 without restraints) Performing minimization step: 1377. Total energy = 329.2 kcal/mol (328.7 without restraints) Performing minimization step: 1378. Total energy = 329.1 kcal/mol (328.7 without restraints) Performing minimization step: 1379. Total energy = 329.1 kcal/mol (328.6 without restraints) Performing minimization step: 1380. Total energy = 329 kcal/mol (328.5 without restraints) Performing minimization step: 1381. Total energy = 328.9 kcal/mol (328.5 without restraints) Performing minimization step: 1382. Total energy = 328.9 kcal/mol (328.4 without restraints) Performing minimization step: 1383. Total energy = 328.8 kcal/mol (328.4 without restraints) Performing minimization step: 1384. Total energy = 328.7 kcal/mol (328.3 without restraints) Performing minimization step: 1385. Total energy = 328.7 kcal/mol (328.2 without restraints) Performing minimization step: 1386. Total energy = 328.6 kcal/mol (328.2 without restraints) Performing minimization step: 1387. Total energy = 328.5 kcal/mol (328.1 without restraints) Performing minimization step: 1388. Total energy = 328.5 kcal/mol (328 without restraints) Performing minimization step: 1389. Total energy = 328.4 kcal/mol (328 without restraints) Performing minimization step: 1390. Total energy = 328.3 kcal/mol (327.9 without restraints) Performing minimization step: 1391. Total energy = 328.3 kcal/mol (327.8 without restraints) Performing minimization step: 1392. Total energy = 328.2 kcal/mol (327.8 without restraints) Performing minimization step: 1393. Total energy = 328.1 kcal/mol (327.7 without restraints) Performing minimization step: 1394. Total energy = 328.1 kcal/mol (327.6 without restraints) Performing minimization step: 1395. Total energy = 328 kcal/mol (327.6 without restraints) Performing minimization step: 1396. Total energy = 328 kcal/mol (327.5 without restraints) Performing minimization step: 1397. Total energy = 327.9 kcal/mol (327.4 without restraints) Performing minimization step: 1398. Total energy = 327.8 kcal/mol (327.4 without restraints) Performing minimization step: 1399. Total energy = 327.8 kcal/mol (327.3 without restraints) Performing minimization step: 1400. Total energy = 327.7 kcal/mol (327.3 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 327.6 kcal/mol (327.2 without restraints) Performing minimization step: 1402. Total energy = 327.6 kcal/mol (327.1 without restraints) Performing minimization step: 1403. Total energy = 327.5 kcal/mol (327.1 without restraints) Performing minimization step: 1404. Total energy = 327.4 kcal/mol (327 without restraints) Performing minimization step: 1405. Total energy = 327.4 kcal/mol (326.9 without restraints) Performing minimization step: 1406. Total energy = 327.3 kcal/mol (326.9 without restraints) Performing minimization step: 1407. Total energy = 327.2 kcal/mol (326.8 without restraints) Performing minimization step: 1408. Total energy = 327.2 kcal/mol (326.7 without restraints) Performing minimization step: 1409. Total energy = 327.1 kcal/mol (326.7 without restraints) Performing minimization step: 1410. Total energy = 327.1 kcal/mol (326.6 without restraints) Performing minimization step: 1411. Total energy = 327 kcal/mol (326.6 without restraints) Performing minimization step: 1412. Total energy = 326.9 kcal/mol (326.5 without restraints) Performing minimization step: 1413. Total energy = 326.9 kcal/mol (326.4 without restraints) Performing minimization step: 1414. Total energy = 326.8 kcal/mol (326.4 without restraints) Performing minimization step: 1415. Total energy = 326.7 kcal/mol (326.3 without restraints) Performing minimization step: 1416. Total energy = 326.7 kcal/mol (326.2 without restraints) Performing minimization step: 1417. Total energy = 326.6 kcal/mol (326.2 without restraints) Performing minimization step: 1418. Total energy = 326.5 kcal/mol (326.1 without restraints) Performing minimization step: 1419. Total energy = 326.5 kcal/mol (326 without restraints) Performing minimization step: 1420. Total energy = 326.4 kcal/mol (326 without restraints) Performing minimization step: 1421. Total energy = 326.4 kcal/mol (325.9 without restraints) Performing minimization step: 1422. Total energy = 326.3 kcal/mol (325.9 without restraints) Performing minimization step: 1423. Total energy = 326.2 kcal/mol (325.8 without restraints) Performing minimization step: 1424. Total energy = 326.2 kcal/mol (325.7 without restraints) Performing minimization step: 1425. Total energy = 326.1 kcal/mol (325.7 without restraints) Performing minimization step: 1426. Total energy = 326 kcal/mol (325.6 without restraints) Performing minimization step: 1427. Total energy = 326 kcal/mol (325.5 without restraints) Performing minimization step: 1428. Total energy = 325.9 kcal/mol (325.5 without restraints) Performing minimization step: 1429. Total energy = 325.9 kcal/mol (325.4 without restraints) Performing minimization step: 1430. Total energy = 325.8 kcal/mol (325.4 without restraints) Performing minimization step: 1431. Total energy = 325.7 kcal/mol (325.3 without restraints) Performing minimization step: 1432. Total energy = 325.7 kcal/mol (325.2 without restraints) Performing minimization step: 1433. Total energy = 325.6 kcal/mol (325.2 without restraints) Performing minimization step: 1434. Total energy = 325.5 kcal/mol (325.1 without restraints) Performing minimization step: 1435. Total energy = 325.5 kcal/mol (325 without restraints) Performing minimization step: 1436. Total energy = 325.4 kcal/mol (325 without restraints) Performing minimization step: 1437. Total energy = 325.4 kcal/mol (324.9 without restraints) Performing minimization step: 1438. Total energy = 325.3 kcal/mol (324.9 without restraints) Performing minimization step: 1439. Total energy = 325.2 kcal/mol (324.8 without restraints) Performing minimization step: 1440. Total energy = 325.2 kcal/mol (324.7 without restraints) Performing minimization step: 1441. Total energy = 325.1 kcal/mol (324.7 without restraints) Performing minimization step: 1442. Total energy = 325.1 kcal/mol (324.6 without restraints) Performing minimization step: 1443. Total energy = 325 kcal/mol (324.6 without restraints) Performing minimization step: 1444. Total energy = 324.9 kcal/mol (324.5 without restraints) Performing minimization step: 1445. Total energy = 324.9 kcal/mol (324.4 without restraints) Performing minimization step: 1446. Total energy = 324.8 kcal/mol (324.4 without restraints) Performing minimization step: 1447. Total energy = 324.7 kcal/mol (324.3 without restraints) Performing minimization step: 1448. Total energy = 324.7 kcal/mol (324.3 without restraints) Performing minimization step: 1449. Total energy = 324.6 kcal/mol (324.2 without restraints) Performing minimization step: 1450. Total energy = 324.6 kcal/mol (324.1 without restraints) Performing minimization step: 1451. Total energy = 324.5 kcal/mol (324.1 without restraints) Performing minimization step: 1452. Total energy = 324.4 kcal/mol (324 without restraints) Performing minimization step: 1453. Total energy = 324.4 kcal/mol (323.9 without restraints) Performing minimization step: 1454. Total energy = 324.3 kcal/mol (323.9 without restraints) Performing minimization step: 1455. Total energy = 324.3 kcal/mol (323.8 without restraints) Performing minimization step: 1456. Total energy = 324.2 kcal/mol (323.8 without restraints) Performing minimization step: 1457. Total energy = 324.1 kcal/mol (323.7 without restraints) Performing minimization step: 1458. Total energy = 324.1 kcal/mol (323.6 without restraints) Performing minimization step: 1459. Total energy = 324 kcal/mol (323.6 without restraints) Performing minimization step: 1460. Total energy = 324 kcal/mol (323.5 without restraints) Performing minimization step: 1461. Total energy = 323.9 kcal/mol (323.5 without restraints) Performing minimization step: 1462. Total energy = 323.8 kcal/mol (323.4 without restraints) Performing minimization step: 1463. Total energy = 323.8 kcal/mol (323.3 without restraints) Performing minimization step: 1464. Total energy = 323.7 kcal/mol (323.3 without restraints) Performing minimization step: 1465. Total energy = 323.6 kcal/mol (323.2 without restraints) Performing minimization step: 1466. Total energy = 323.6 kcal/mol (323.2 without restraints) Performing minimization step: 1467. Total energy = 323.5 kcal/mol (323.1 without restraints) Performing minimization step: 1468. Total energy = 323.5 kcal/mol (323 without restraints) Performing minimization step: 1469. Total energy = 323.4 kcal/mol (323 without restraints) Performing minimization step: 1470. Total energy = 323.3 kcal/mol (322.9 without restraints) Performing minimization step: 1471. Total energy = 323.3 kcal/mol (322.9 without restraints) Performing minimization step: 1472. Total energy = 323.2 kcal/mol (322.8 without restraints) Performing minimization step: 1473. Total energy = 323.2 kcal/mol (322.7 without restraints) Performing minimization step: 1474. Total energy = 323.1 kcal/mol (322.7 without restraints) Performing minimization step: 1475. Total energy = 323 kcal/mol (322.6 without restraints) Performing minimization step: 1476. Total energy = 323 kcal/mol (322.6 without restraints) Performing minimization step: 1477. Total energy = 322.9 kcal/mol (322.5 without restraints) Performing minimization step: 1478. Total energy = 322.9 kcal/mol (322.4 without restraints) Performing minimization step: 1479. Total energy = 322.8 kcal/mol (322.4 without restraints) Performing minimization step: 1480. Total energy = 322.8 kcal/mol (322.3 without restraints) Performing minimization step: 1481. Total energy = 322.7 kcal/mol (322.3 without restraints) Performing minimization step: 1482. Total energy = 322.6 kcal/mol (322.2 without restraints) Performing minimization step: 1483. Total energy = 322.6 kcal/mol (322.1 without restraints) Performing minimization step: 1484. Total energy = 322.5 kcal/mol (322.1 without restraints) Performing minimization step: 1485. Total energy = 322.5 kcal/mol (322 without restraints) Performing minimization step: 1486. Total energy = 322.4 kcal/mol (322 without restraints) Performing minimization step: 1487. Total energy = 322.3 kcal/mol (321.9 without restraints) Performing minimization step: 1488. Total energy = 322.3 kcal/mol (321.9 without restraints) Performing minimization step: 1489. Total energy = 322.2 kcal/mol (321.8 without restraints) Performing minimization step: 1490. Total energy = 322.2 kcal/mol (321.7 without restraints) Performing minimization step: 1491. Total energy = 322.1 kcal/mol (321.7 without restraints) Performing minimization step: 1492. Total energy = 322 kcal/mol (321.6 without restraints) Performing minimization step: 1493. Total energy = 322 kcal/mol (321.6 without restraints) Performing minimization step: 1494. Total energy = 321.9 kcal/mol (321.5 without restraints) Performing minimization step: 1495. Total energy = 321.9 kcal/mol (321.4 without restraints) Performing minimization step: 1496. Total energy = 321.8 kcal/mol (321.4 without restraints) Performing minimization step: 1497. Total energy = 321.7 kcal/mol (321.3 without restraints) Performing minimization step: 1498. Total energy = 321.7 kcal/mol (321.3 without restraints) Performing minimization step: 1499. Total energy = 321.6 kcal/mol (321.2 without restraints) Performing minimization step: 1500. Total energy = 321.6 kcal/mol (321.2 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 321.5 kcal/mol (321.1 without restraints) Performing minimization step: 1502. Total energy = 321.5 kcal/mol (321 without restraints) Performing minimization step: 1503. Total energy = 321.4 kcal/mol (321 without restraints) Performing minimization step: 1504. Total energy = 321.3 kcal/mol (320.9 without restraints) Performing minimization step: 1505. Total energy = 321.3 kcal/mol (320.9 without restraints) Performing minimization step: 1506. Total energy = 321.2 kcal/mol (320.8 without restraints) Performing minimization step: 1507. Total energy = 321.2 kcal/mol (320.7 without restraints) Performing minimization step: 1508. Total energy = 321.1 kcal/mol (320.7 without restraints) Performing minimization step: 1509. Total energy = 321.1 kcal/mol (320.6 without restraints) Performing minimization step: 1510. Total energy = 321 kcal/mol (320.6 without restraints) Performing minimization step: 1511. Total energy = 320.9 kcal/mol (320.5 without restraints) Performing minimization step: 1512. Total energy = 320.9 kcal/mol (320.5 without restraints) Performing minimization step: 1513. Total energy = 320.8 kcal/mol (320.4 without restraints) Performing minimization step: 1514. Total energy = 320.8 kcal/mol (320.3 without restraints) Performing minimization step: 1515. Total energy = 320.7 kcal/mol (320.3 without restraints) Performing minimization step: 1516. Total energy = 320.6 kcal/mol (320.2 without restraints) Performing minimization step: 1517. Total energy = 320.6 kcal/mol (320.2 without restraints) Performing minimization step: 1518. Total energy = 320.5 kcal/mol (320.1 without restraints) Performing minimization step: 1519. Total energy = 320.5 kcal/mol (320.1 without restraints) Performing minimization step: 1520. Total energy = 320.4 kcal/mol (320 without restraints) Performing minimization step: 1521. Total energy = 320.4 kcal/mol (319.9 without restraints) Performing minimization step: 1522. Total energy = 320.3 kcal/mol (319.9 without restraints) Performing minimization step: 1523. Total energy = 320.2 kcal/mol (319.8 without restraints) Performing minimization step: 1524. Total energy = 320.2 kcal/mol (319.8 without restraints) Performing minimization step: 1525. Total energy = 320.1 kcal/mol (319.7 without restraints) Performing minimization step: 1526. Total energy = 320.1 kcal/mol (319.7 without restraints) Performing minimization step: 1527. Total energy = 320 kcal/mol (319.6 without restraints) Performing minimization step: 1528. Total energy = 320 kcal/mol (319.5 without restraints) Performing minimization step: 1529. Total energy = 319.9 kcal/mol (319.5 without restraints) Performing minimization step: 1530. Total energy = 319.8 kcal/mol (319.4 without restraints) Performing minimization step: 1531. Total energy = 319.8 kcal/mol (319.4 without restraints) Performing minimization step: 1532. Total energy = 319.7 kcal/mol (319.3 without restraints) Performing minimization step: 1533. Total energy = 319.7 kcal/mol (319.3 without restraints) Performing minimization step: 1534. Total energy = 319.6 kcal/mol (319.2 without restraints) Performing minimization step: 1535. Total energy = 319.6 kcal/mol (319.1 without restraints) Performing minimization step: 1536. Total energy = 319.5 kcal/mol (319.1 without restraints) Performing minimization step: 1537. Total energy = 319.4 kcal/mol (319 without restraints) Performing minimization step: 1538. Total energy = 319.4 kcal/mol (319 without restraints) Performing minimization step: 1539. Total energy = 319.3 kcal/mol (318.9 without restraints) Performing minimization step: 1540. Total energy = 319.3 kcal/mol (318.9 without restraints) Performing minimization step: 1541. Total energy = 319.2 kcal/mol (318.8 without restraints) Performing minimization step: 1542. Total energy = 319.2 kcal/mol (318.8 without restraints) Performing minimization step: 1543. Total energy = 319.1 kcal/mol (318.7 without restraints) Performing minimization step: 1544. Total energy = 319.1 kcal/mol (318.6 without restraints) Performing minimization step: 1545. Total energy = 319 kcal/mol (318.6 without restraints) Performing minimization step: 1546. Total energy = 318.9 kcal/mol (318.5 without restraints) Performing minimization step: 1547. Total energy = 318.9 kcal/mol (318.5 without restraints) Performing minimization step: 1548. Total energy = 318.8 kcal/mol (318.4 without restraints) Performing minimization step: 1549. Total energy = 318.8 kcal/mol (318.4 without restraints) Performing minimization step: 1550. Total energy = 318.7 kcal/mol (318.3 without restraints) Performing minimization step: 1551. Total energy = 318.7 kcal/mol (318.2 without restraints) Performing minimization step: 1552. Total energy = 318.6 kcal/mol (318.2 without restraints) Performing minimization step: 1553. Total energy = 318.6 kcal/mol (318.1 without restraints) Performing minimization step: 1554. Total energy = 318.5 kcal/mol (318.1 without restraints) Performing minimization step: 1555. Total energy = 318.4 kcal/mol (318 without restraints) Performing minimization step: 1556. Total energy = 318.4 kcal/mol (318 without restraints) Performing minimization step: 1557. Total energy = 318.3 kcal/mol (317.9 without restraints) Performing minimization step: 1558. Total energy = 318.3 kcal/mol (317.9 without restraints) Performing minimization step: 1559. Total energy = 318.2 kcal/mol (317.8 without restraints) Performing minimization step: 1560. Total energy = 318.2 kcal/mol (317.8 without restraints) Performing minimization step: 1561. Total energy = 318.1 kcal/mol (317.7 without restraints) Performing minimization step: 1562. Total energy = 318.1 kcal/mol (317.6 without restraints) Performing minimization step: 1563. Total energy = 318 kcal/mol (317.6 without restraints) Performing minimization step: 1564. Total energy = 317.9 kcal/mol (317.5 without restraints) Performing minimization step: 1565. Total energy = 317.9 kcal/mol (317.5 without restraints) Performing minimization step: 1566. Total energy = 317.8 kcal/mol (317.4 without restraints) Performing minimization step: 1567. Total energy = 317.8 kcal/mol (317.4 without restraints) Performing minimization step: 1568. Total energy = 317.7 kcal/mol (317.3 without restraints) Performing minimization step: 1569. Total energy = 317.7 kcal/mol (317.3 without restraints) Performing minimization step: 1570. Total energy = 317.6 kcal/mol (317.2 without restraints) Performing minimization step: 1571. Total energy = 317.6 kcal/mol (317.1 without restraints) Performing minimization step: 1572. Total energy = 317.5 kcal/mol (317.1 without restraints) Performing minimization step: 1573. Total energy = 317.5 kcal/mol (317 without restraints) Performing minimization step: 1574. Total energy = 317.4 kcal/mol (317 without restraints) Performing minimization step: 1575. Total energy = 317.3 kcal/mol (316.9 without restraints) Performing minimization step: 1576. Total energy = 317.3 kcal/mol (316.9 without restraints) Performing minimization step: 1577. Total energy = 317.2 kcal/mol (316.8 without restraints) Performing minimization step: 1578. Total energy = 317.2 kcal/mol (316.8 without restraints) Performing minimization step: 1579. Total energy = 317.1 kcal/mol (316.7 without restraints) Performing minimization step: 1580. Total energy = 317.1 kcal/mol (316.7 without restraints) Performing minimization step: 1581. Total energy = 317 kcal/mol (316.6 without restraints) Performing minimization step: 1582. Total energy = 317 kcal/mol (316.5 without restraints) Performing minimization step: 1583. Total energy = 316.9 kcal/mol (316.5 without restraints) Performing minimization step: 1584. Total energy = 316.9 kcal/mol (316.4 without restraints) Performing minimization step: 1585. Total energy = 316.8 kcal/mol (316.4 without restraints) Performing minimization step: 1586. Total energy = 316.7 kcal/mol (316.3 without restraints) Performing minimization step: 1587. Total energy = 316.7 kcal/mol (316.3 without restraints) Performing minimization step: 1588. Total energy = 316.6 kcal/mol (316.2 without restraints) Performing minimization step: 1589. Total energy = 316.6 kcal/mol (316.2 without restraints) Performing minimization step: 1590. Total energy = 316.5 kcal/mol (316.1 without restraints) Performing minimization step: 1591. Total energy = 316.5 kcal/mol (316.1 without restraints) Performing minimization step: 1592. Total energy = 316.4 kcal/mol (316 without restraints) Performing minimization step: 1593. Total energy = 316.4 kcal/mol (316 without restraints) Performing minimization step: 1594. Total energy = 316.3 kcal/mol (315.9 without restraints) Performing minimization step: 1595. Total energy = 316.3 kcal/mol (315.8 without restraints) Performing minimization step: 1596. Total energy = 316.2 kcal/mol (315.8 without restraints) Performing minimization step: 1597. Total energy = 316.2 kcal/mol (315.7 without restraints) Performing minimization step: 1598. Total energy = 316.1 kcal/mol (315.7 without restraints) Performing minimization step: 1599. Total energy = 316 kcal/mol (315.6 without restraints) Performing minimization step: 1600. Total energy = 316 kcal/mol (315.6 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 315.9 kcal/mol (315.5 without restraints) Performing minimization step: 1602. Total energy = 315.9 kcal/mol (315.5 without restraints) Performing minimization step: 1603. Total energy = 315.8 kcal/mol (315.4 without restraints) Performing minimization step: 1604. Total energy = 315.8 kcal/mol (315.4 without restraints) Performing minimization step: 1605. Total energy = 315.7 kcal/mol (315.3 without restraints) Performing minimization step: 1606. Total energy = 315.7 kcal/mol (315.3 without restraints) Performing minimization step: 1607. Total energy = 315.6 kcal/mol (315.2 without restraints) Performing minimization step: 1608. Total energy = 315.6 kcal/mol (315.2 without restraints) Performing minimization step: 1609. Total energy = 315.5 kcal/mol (315.1 without restraints) Performing minimization step: 1610. Total energy = 315.5 kcal/mol (315 without restraints) Performing minimization step: 1611. Total energy = 315.4 kcal/mol (315 without restraints) Performing minimization step: 1612. Total energy = 315.4 kcal/mol (314.9 without restraints) Performing minimization step: 1613. Total energy = 315.3 kcal/mol (314.9 without restraints) Performing minimization step: 1614. Total energy = 315.2 kcal/mol (314.8 without restraints) Performing minimization step: 1615. Total energy = 315.2 kcal/mol (314.8 without restraints) Performing minimization step: 1616. Total energy = 315.1 kcal/mol (314.7 without restraints) Performing minimization step: 1617. Total energy = 315.1 kcal/mol (314.7 without restraints) Performing minimization step: 1618. Total energy = 315 kcal/mol (314.6 without restraints) Performing minimization step: 1619. Total energy = 315 kcal/mol (314.6 without restraints) Performing minimization step: 1620. Total energy = 314.9 kcal/mol (314.5 without restraints) Performing minimization step: 1621. Total energy = 314.9 kcal/mol (314.5 without restraints) Performing minimization step: 1622. Total energy = 314.8 kcal/mol (314.4 without restraints) Performing minimization step: 1623. Total energy = 314.8 kcal/mol (314.4 without restraints) Performing minimization step: 1624. Total energy = 314.7 kcal/mol (314.3 without restraints) Performing minimization step: 1625. Total energy = 314.7 kcal/mol (314.3 without restraints) Performing minimization step: 1626. Total energy = 314.6 kcal/mol (314.2 without restraints) Performing minimization step: 1627. Total energy = 314.6 kcal/mol (314.2 without restraints) Performing minimization step: 1628. Total energy = 314.5 kcal/mol (314.1 without restraints) Performing minimization step: 1629. Total energy = 314.5 kcal/mol (314.1 without restraints) Performing minimization step: 1630. Total energy = 314.4 kcal/mol (314 without restraints) Performing minimization step: 1631. Total energy = 314.4 kcal/mol (313.9 without restraints) Performing minimization step: 1632. Total energy = 314.3 kcal/mol (313.9 without restraints) Performing minimization step: 1633. Total energy = 314.3 kcal/mol (313.8 without restraints) Performing minimization step: 1634. Total energy = 314.2 kcal/mol (313.8 without restraints) Performing minimization step: 1635. Total energy = 314.1 kcal/mol (313.7 without restraints) Performing minimization step: 1636. Total energy = 314.1 kcal/mol (313.7 without restraints) Performing minimization step: 1637. Total energy = 314 kcal/mol (313.6 without restraints) Performing minimization step: 1638. Total energy = 314 kcal/mol (313.6 without restraints) Performing minimization step: 1639. Total energy = 313.9 kcal/mol (313.5 without restraints) Performing minimization step: 1640. Total energy = 313.9 kcal/mol (313.5 without restraints) Performing minimization step: 1641. Total energy = 313.8 kcal/mol (313.4 without restraints) Performing minimization step: 1642. Total energy = 313.8 kcal/mol (313.4 without restraints) Performing minimization step: 1643. Total energy = 313.7 kcal/mol (313.3 without restraints) Performing minimization step: 1644. Total energy = 313.7 kcal/mol (313.3 without restraints) Performing minimization step: 1645. Total energy = 313.6 kcal/mol (313.2 without restraints) Performing minimization step: 1646. Total energy = 313.6 kcal/mol (313.2 without restraints) Performing minimization step: 1647. Total energy = 313.5 kcal/mol (313.1 without restraints) Performing minimization step: 1648. Total energy = 313.5 kcal/mol (313.1 without restraints) Performing minimization step: 1649. Total energy = 313.4 kcal/mol (313 without restraints) Performing minimization step: 1650. Total energy = 313.4 kcal/mol (313 without restraints) Performing minimization step: 1651. Total energy = 313.3 kcal/mol (312.9 without restraints) Performing minimization step: 1652. Total energy = 313.3 kcal/mol (312.9 without restraints) Performing minimization step: 1653. Total energy = 313.2 kcal/mol (312.8 without restraints) Performing minimization step: 1654. Total energy = 313.2 kcal/mol (312.8 without restraints) Performing minimization step: 1655. Total energy = 313.1 kcal/mol (312.7 without restraints) Performing minimization step: 1656. Total energy = 313.1 kcal/mol (312.7 without restraints) Performing minimization step: 1657. Total energy = 313 kcal/mol (312.6 without restraints) Performing minimization step: 1658. Total energy = 313 kcal/mol (312.6 without restraints) Performing minimization step: 1659. Total energy = 312.9 kcal/mol (312.5 without restraints) Performing minimization step: 1660. Total energy = 312.9 kcal/mol (312.5 without restraints) Performing minimization step: 1661. Total energy = 312.8 kcal/mol (312.4 without restraints) Performing minimization step: 1662. Total energy = 312.8 kcal/mol (312.4 without restraints) Performing minimization step: 1663. Total energy = 312.7 kcal/mol (312.3 without restraints) Performing minimization step: 1664. Total energy = 312.7 kcal/mol (312.3 without restraints) Performing minimization step: 1665. Total energy = 312.6 kcal/mol (312.2 without restraints) Performing minimization step: 1666. Total energy = 312.6 kcal/mol (312.2 without restraints) Performing minimization step: 1667. Total energy = 312.5 kcal/mol (312.1 without restraints) Performing minimization step: 1668. Total energy = 312.5 kcal/mol (312.1 without restraints) Performing minimization step: 1669. Total energy = 312.4 kcal/mol (312 without restraints) Performing minimization step: 1670. Total energy = 312.4 kcal/mol (312 without restraints) Performing minimization step: 1671. Total energy = 312.3 kcal/mol (311.9 without restraints) Performing minimization step: 1672. Total energy = 312.3 kcal/mol (311.9 without restraints) Performing minimization step: 1673. Total energy = 312.2 kcal/mol (311.8 without restraints) Performing minimization step: 1674. Total energy = 312.2 kcal/mol (311.8 without restraints) Performing minimization step: 1675. Total energy = 312.1 kcal/mol (311.7 without restraints) Performing minimization step: 1676. Total energy = 312.1 kcal/mol (311.6 without restraints) Performing minimization step: 1677. Total energy = 312 kcal/mol (311.6 without restraints) Performing minimization step: 1678. Total energy = 312 kcal/mol (311.5 without restraints) Performing minimization step: 1679. Total energy = 311.9 kcal/mol (311.5 without restraints) Performing minimization step: 1680. Total energy = 311.9 kcal/mol (311.4 without restraints) Performing minimization step: 1681. Total energy = 311.8 kcal/mol (311.4 without restraints) Performing minimization step: 1682. Total energy = 311.8 kcal/mol (311.3 without restraints) Performing minimization step: 1683. Total energy = 311.7 kcal/mol (311.3 without restraints) Performing minimization step: 1684. Total energy = 311.7 kcal/mol (311.3 without restraints) Performing minimization step: 1685. Total energy = 311.6 kcal/mol (311.2 without restraints) Performing minimization step: 1686. Total energy = 311.6 kcal/mol (311.2 without restraints) Performing minimization step: 1687. Total energy = 311.5 kcal/mol (311.1 without restraints) Performing minimization step: 1688. Total energy = 311.5 kcal/mol (311.1 without restraints) Performing minimization step: 1689. Total energy = 311.4 kcal/mol (311 without restraints) Performing minimization step: 1690. Total energy = 311.4 kcal/mol (311 without restraints) Performing minimization step: 1691. Total energy = 311.3 kcal/mol (310.9 without restraints) Performing minimization step: 1692. Total energy = 311.3 kcal/mol (310.9 without restraints) Performing minimization step: 1693. Total energy = 311.2 kcal/mol (310.8 without restraints) Performing minimization step: 1694. Total energy = 311.2 kcal/mol (310.8 without restraints) Performing minimization step: 1695. Total energy = 311.1 kcal/mol (310.7 without restraints) Performing minimization step: 1696. Total energy = 311.1 kcal/mol (310.7 without restraints) Performing minimization step: 1697. Total energy = 311 kcal/mol (310.6 without restraints) Performing minimization step: 1698. Total energy = 311 kcal/mol (310.6 without restraints) Performing minimization step: 1699. Total energy = 310.9 kcal/mol (310.5 without restraints) Performing minimization step: 1700. Total energy = 310.9 kcal/mol (310.5 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 310.8 kcal/mol (310.4 without restraints) Performing minimization step: 1702. Total energy = 310.8 kcal/mol (310.4 without restraints) Performing minimization step: 1703. Total energy = 310.7 kcal/mol (310.3 without restraints) Performing minimization step: 1704. Total energy = 310.7 kcal/mol (310.3 without restraints) Performing minimization step: 1705. Total energy = 310.6 kcal/mol (310.2 without restraints) Performing minimization step: 1706. Total energy = 310.6 kcal/mol (310.2 without restraints) Performing minimization step: 1707. Total energy = 310.5 kcal/mol (310.1 without restraints) Performing minimization step: 1708. Total energy = 310.5 kcal/mol (310.1 without restraints) Performing minimization step: 1709. Total energy = 310.4 kcal/mol (310 without restraints) Performing minimization step: 1710. Total energy = 310.4 kcal/mol (310 without restraints) Performing minimization step: 1711. Total energy = 310.3 kcal/mol (309.9 without restraints) Performing minimization step: 1712. Total energy = 310.3 kcal/mol (309.9 without restraints) Performing minimization step: 1713. Total energy = 310.2 kcal/mol (309.8 without restraints) Performing minimization step: 1714. Total energy = 310.2 kcal/mol (309.8 without restraints) Performing minimization step: 1715. Total energy = 310.1 kcal/mol (309.7 without restraints) Performing minimization step: 1716. Total energy = 310.1 kcal/mol (309.7 without restraints) Performing minimization step: 1717. Total energy = 310 kcal/mol (309.6 without restraints) Performing minimization step: 1718. Total energy = 310 kcal/mol (309.6 without restraints) Performing minimization step: 1719. Total energy = 309.9 kcal/mol (309.5 without restraints) Performing minimization step: 1720. Total energy = 309.9 kcal/mol (309.5 without restraints) Performing minimization step: 1721. Total energy = 309.8 kcal/mol (309.4 without restraints) Performing minimization step: 1722. Total energy = 309.8 kcal/mol (309.4 without restraints) Performing minimization step: 1723. Total energy = 309.7 kcal/mol (309.3 without restraints) Performing minimization step: 1724. Total energy = 309.7 kcal/mol (309.3 without restraints) Performing minimization step: 1725. Total energy = 309.6 kcal/mol (309.2 without restraints) Performing minimization step: 1726. Total energy = 309.6 kcal/mol (309.2 without restraints) Performing minimization step: 1727. Total energy = 309.5 kcal/mol (309.1 without restraints) Performing minimization step: 1728. Total energy = 309.5 kcal/mol (309.1 without restraints) Performing minimization step: 1729. Total energy = 309.4 kcal/mol (309 without restraints) Performing minimization step: 1730. Total energy = 309.4 kcal/mol (309 without restraints) Performing minimization step: 1731. Total energy = 309.4 kcal/mol (308.9 without restraints) Performing minimization step: 1732. Total energy = 309.3 kcal/mol (308.9 without restraints) Performing minimization step: 1733. Total energy = 309.3 kcal/mol (308.9 without restraints) Performing minimization step: 1734. Total energy = 309.2 kcal/mol (308.8 without restraints) Performing minimization step: 1735. Total energy = 309.2 kcal/mol (308.8 without restraints) Performing minimization step: 1736. Total energy = 309.1 kcal/mol (308.7 without restraints) Performing minimization step: 1737. Total energy = 309.1 kcal/mol (308.7 without restraints) Performing minimization step: 1738. Total energy = 309 kcal/mol (308.6 without restraints) Performing minimization step: 1739. Total energy = 309 kcal/mol (308.6 without restraints) Performing minimization step: 1740. Total energy = 308.9 kcal/mol (308.5 without restraints) Performing minimization step: 1741. Total energy = 308.9 kcal/mol (308.5 without restraints) Performing minimization step: 1742. Total energy = 308.8 kcal/mol (308.4 without restraints) Performing minimization step: 1743. Total energy = 308.8 kcal/mol (308.4 without restraints) Performing minimization step: 1744. Total energy = 308.7 kcal/mol (308.3 without restraints) Performing minimization step: 1745. Total energy = 308.7 kcal/mol (308.3 without restraints) Performing minimization step: 1746. Total energy = 308.6 kcal/mol (308.2 without restraints) Performing minimization step: 1747. Total energy = 308.6 kcal/mol (308.2 without restraints) Performing minimization step: 1748. Total energy = 308.5 kcal/mol (308.1 without restraints) Performing minimization step: 1749. Total energy = 308.5 kcal/mol (308.1 without restraints) Performing minimization step: 1750. Total energy = 308.4 kcal/mol (308 without restraints) Performing minimization step: 1751. Total energy = 308.4 kcal/mol (308 without restraints) Performing minimization step: 1752. Total energy = 308.4 kcal/mol (307.9 without restraints) Performing minimization step: 1753. Total energy = 308.3 kcal/mol (307.9 without restraints) Performing minimization step: 1754. Total energy = 308.3 kcal/mol (307.9 without restraints) Performing minimization step: 1755. Total energy = 308.2 kcal/mol (307.8 without restraints) Performing minimization step: 1756. Total energy = 308.2 kcal/mol (307.8 without restraints) Performing minimization step: 1757. Total energy = 308.1 kcal/mol (307.7 without restraints) Performing minimization step: 1758. Total energy = 308.1 kcal/mol (307.7 without restraints) Performing minimization step: 1759. Total energy = 308 kcal/mol (307.6 without restraints) Performing minimization step: 1760. Total energy = 308 kcal/mol (307.6 without restraints) Performing minimization step: 1761. Total energy = 307.9 kcal/mol (307.5 without restraints) Performing minimization step: 1762. Total energy = 307.9 kcal/mol (307.5 without restraints) Performing minimization step: 1763. Total energy = 307.8 kcal/mol (307.4 without restraints) Performing minimization step: 1764. Total energy = 307.8 kcal/mol (307.4 without restraints) Performing minimization step: 1765. Total energy = 307.7 kcal/mol (307.3 without restraints) Performing minimization step: 1766. Total energy = 307.7 kcal/mol (307.3 without restraints) Performing minimization step: 1767. Total energy = 307.6 kcal/mol (307.2 without restraints) Performing minimization step: 1768. Total energy = 307.6 kcal/mol (307.2 without restraints) Performing minimization step: 1769. Total energy = 307.6 kcal/mol (307.2 without restraints) Performing minimization step: 1770. Total energy = 307.5 kcal/mol (307.1 without restraints) Performing minimization step: 1771. Total energy = 307.5 kcal/mol (307.1 without restraints) Performing minimization step: 1772. Total energy = 307.4 kcal/mol (307 without restraints) Performing minimization step: 1773. Total energy = 307.4 kcal/mol (307 without restraints) Performing minimization step: 1774. Total energy = 307.3 kcal/mol (306.9 without restraints) Performing minimization step: 1775. Total energy = 307.3 kcal/mol (306.9 without restraints) Performing minimization step: 1776. Total energy = 307.2 kcal/mol (306.8 without restraints) Performing minimization step: 1777. Total energy = 307.2 kcal/mol (306.8 without restraints) Performing minimization step: 1778. Total energy = 307.1 kcal/mol (306.7 without restraints) Performing minimization step: 1779. Total energy = 307.1 kcal/mol (306.7 without restraints) Performing minimization step: 1780. Total energy = 307 kcal/mol (306.6 without restraints) Performing minimization step: 1781. Total energy = 307 kcal/mol (306.6 without restraints) Performing minimization step: 1782. Total energy = 306.9 kcal/mol (306.5 without restraints) Performing minimization step: 1783. Total energy = 306.9 kcal/mol (306.5 without restraints) Performing minimization step: 1784. Total energy = 306.9 kcal/mol (306.5 without restraints) Performing minimization step: 1785. Total energy = 306.8 kcal/mol (306.4 without restraints) Performing minimization step: 1786. Total energy = 306.8 kcal/mol (306.4 without restraints) Performing minimization step: 1787. Total energy = 306.7 kcal/mol (306.3 without restraints) Performing minimization step: 1788. Total energy = 306.7 kcal/mol (306.3 without restraints) Performing minimization step: 1789. Total energy = 306.6 kcal/mol (306.2 without restraints) Performing minimization step: 1790. Total energy = 306.6 kcal/mol (306.2 without restraints) Performing minimization step: 1791. Total energy = 306.5 kcal/mol (306.1 without restraints) Performing minimization step: 1792. Total energy = 306.5 kcal/mol (306.1 without restraints) Performing minimization step: 1793. Total energy = 306.4 kcal/mol (306 without restraints) Performing minimization step: 1794. Total energy = 306.4 kcal/mol (306 without restraints) Performing minimization step: 1795. Total energy = 306.4 kcal/mol (305.9 without restraints) Performing minimization step: 1796. Total energy = 306.3 kcal/mol (305.9 without restraints) Performing minimization step: 1797. Total energy = 306.3 kcal/mol (305.9 without restraints) Performing minimization step: 1798. Total energy = 306.2 kcal/mol (305.8 without restraints) Performing minimization step: 1799. Total energy = 306.2 kcal/mol (305.8 without restraints) Performing minimization step: 1800. Total energy = 306.1 kcal/mol (305.7 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 306.1 kcal/mol (305.7 without restraints) Performing minimization step: 1802. Total energy = 306 kcal/mol (305.6 without restraints) Performing minimization step: 1803. Total energy = 306 kcal/mol (305.6 without restraints) Performing minimization step: 1804. Total energy = 305.9 kcal/mol (305.5 without restraints) Performing minimization step: 1805. Total energy = 305.9 kcal/mol (305.5 without restraints) Performing minimization step: 1806. Total energy = 305.8 kcal/mol (305.4 without restraints) Performing minimization step: 1807. Total energy = 305.8 kcal/mol (305.4 without restraints) Performing minimization step: 1808. Total energy = 305.8 kcal/mol (305.4 without restraints) Performing minimization step: 1809. Total energy = 305.7 kcal/mol (305.3 without restraints) Performing minimization step: 1810. Total energy = 305.7 kcal/mol (305.3 without restraints) Performing minimization step: 1811. Total energy = 305.6 kcal/mol (305.2 without restraints) Performing minimization step: 1812. Total energy = 305.6 kcal/mol (305.2 without restraints) Performing minimization step: 1813. Total energy = 305.5 kcal/mol (305.1 without restraints) Performing minimization step: 1814. Total energy = 305.5 kcal/mol (305.1 without restraints) Performing minimization step: 1815. Total energy = 305.4 kcal/mol (305 without restraints) Performing minimization step: 1816. Total energy = 305.4 kcal/mol (305 without restraints) Performing minimization step: 1817. Total energy = 305.4 kcal/mol (305 without restraints) Performing minimization step: 1818. Total energy = 305.3 kcal/mol (304.9 without restraints) Performing minimization step: 1819. Total energy = 305.3 kcal/mol (304.9 without restraints) Performing minimization step: 1820. Total energy = 305.2 kcal/mol (304.8 without restraints) Performing minimization step: 1821. Total energy = 305.2 kcal/mol (304.8 without restraints) Performing minimization step: 1822. Total energy = 305.1 kcal/mol (304.7 without restraints) Performing minimization step: 1823. Total energy = 305.1 kcal/mol (304.7 without restraints) Performing minimization step: 1824. Total energy = 305 kcal/mol (304.6 without restraints) Performing minimization step: 1825. Total energy = 305 kcal/mol (304.6 without restraints) Performing minimization step: 1826. Total energy = 304.9 kcal/mol (304.5 without restraints) Performing minimization step: 1827. Total energy = 304.9 kcal/mol (304.5 without restraints) Performing minimization step: 1828. Total energy = 304.9 kcal/mol (304.5 without restraints) Performing minimization step: 1829. Total energy = 304.8 kcal/mol (304.4 without restraints) Performing minimization step: 1830. Total energy = 304.8 kcal/mol (304.4 without restraints) Performing minimization step: 1831. Total energy = 304.7 kcal/mol (304.3 without restraints) Performing minimization step: 1832. Total energy = 304.7 kcal/mol (304.3 without restraints) Performing minimization step: 1833. Total energy = 304.6 kcal/mol (304.2 without restraints) Performing minimization step: 1834. Total energy = 304.6 kcal/mol (304.2 without restraints) Performing minimization step: 1835. Total energy = 304.5 kcal/mol (304.1 without restraints) Performing minimization step: 1836. Total energy = 304.5 kcal/mol (304.1 without restraints) Performing minimization step: 1837. Total energy = 304.5 kcal/mol (304.1 without restraints) Performing minimization step: 1838. Total energy = 304.4 kcal/mol (304 without restraints) Performing minimization step: 1839. Total energy = 304.4 kcal/mol (304 without restraints) Performing minimization step: 1840. Total energy = 304.3 kcal/mol (303.9 without restraints) Performing minimization step: 1841. Total energy = 304.3 kcal/mol (303.9 without restraints) Performing minimization step: 1842. Total energy = 304.2 kcal/mol (303.8 without restraints) Performing minimization step: 1843. Total energy = 304.2 kcal/mol (303.8 without restraints) Performing minimization step: 1844. Total energy = 304.1 kcal/mol (303.7 without restraints) Performing minimization step: 1845. Total energy = 304.1 kcal/mol (303.7 without restraints) Performing minimization step: 1846. Total energy = 304.1 kcal/mol (303.7 without restraints) Performing minimization step: 1847. Total energy = 304 kcal/mol (303.6 without restraints) Performing minimization step: 1848. Total energy = 304 kcal/mol (303.6 without restraints) Performing minimization step: 1849. Total energy = 303.9 kcal/mol (303.5 without restraints) Performing minimization step: 1850. Total energy = 303.9 kcal/mol (303.5 without restraints) Performing minimization step: 1851. Total energy = 303.8 kcal/mol (303.4 without restraints) Performing minimization step: 1852. Total energy = 303.8 kcal/mol (303.4 without restraints) Performing minimization step: 1853. Total energy = 303.8 kcal/mol (303.3 without restraints) Performing minimization step: 1854. Total energy = 303.7 kcal/mol (303.3 without restraints) Performing minimization step: 1855. Total energy = 303.7 kcal/mol (303.3 without restraints) Performing minimization step: 1856. Total energy = 303.6 kcal/mol (303.2 without restraints) Performing minimization step: 1857. Total energy = 303.6 kcal/mol (303.2 without restraints) Performing minimization step: 1858. Total energy = 303.5 kcal/mol (303.1 without restraints) Performing minimization step: 1859. Total energy = 303.5 kcal/mol (303.1 without restraints) Performing minimization step: 1860. Total energy = 303.4 kcal/mol (303 without restraints) Performing minimization step: 1861. Total energy = 303.4 kcal/mol (303 without restraints) Performing minimization step: 1862. Total energy = 303.4 kcal/mol (303 without restraints) Performing minimization step: 1863. Total energy = 303.3 kcal/mol (302.9 without restraints) Performing minimization step: 1864. Total energy = 303.3 kcal/mol (302.9 without restraints) Performing minimization step: 1865. Total energy = 303.2 kcal/mol (302.8 without restraints) Performing minimization step: 1866. Total energy = 303.2 kcal/mol (302.8 without restraints) Performing minimization step: 1867. Total energy = 303.1 kcal/mol (302.7 without restraints) Performing minimization step: 1868. Total energy = 303.1 kcal/mol (302.7 without restraints) Performing minimization step: 1869. Total energy = 303.1 kcal/mol (302.6 without restraints) Performing minimization step: 1870. Total energy = 303 kcal/mol (302.6 without restraints) Performing minimization step: 1871. Total energy = 303 kcal/mol (302.6 without restraints) Performing minimization step: 1872. Total energy = 302.9 kcal/mol (302.5 without restraints) Performing minimization step: 1873. Total energy = 302.9 kcal/mol (302.5 without restraints) Performing minimization step: 1874. Total energy = 302.8 kcal/mol (302.4 without restraints) Performing minimization step: 1875. Total energy = 302.8 kcal/mol (302.4 without restraints) Performing minimization step: 1876. Total energy = 302.7 kcal/mol (302.3 without restraints) Performing minimization step: 1877. Total energy = 302.7 kcal/mol (302.3 without restraints) Performing minimization step: 1878. Total energy = 302.7 kcal/mol (302.3 without restraints) Performing minimization step: 1879. Total energy = 302.6 kcal/mol (302.2 without restraints) Performing minimization step: 1880. Total energy = 302.6 kcal/mol (302.2 without restraints) Performing minimization step: 1881. Total energy = 302.5 kcal/mol (302.1 without restraints) Performing minimization step: 1882. Total energy = 302.5 kcal/mol (302.1 without restraints) Performing minimization step: 1883. Total energy = 302.4 kcal/mol (302 without restraints) Performing minimization step: 1884. Total energy = 302.4 kcal/mol (302 without restraints) Performing minimization step: 1885. Total energy = 302.4 kcal/mol (302 without restraints) Performing minimization step: 1886. Total energy = 302.3 kcal/mol (301.9 without restraints) Performing minimization step: 1887. Total energy = 302.3 kcal/mol (301.9 without restraints) Performing minimization step: 1888. Total energy = 302.2 kcal/mol (301.8 without restraints) Performing minimization step: 1889. Total energy = 302.2 kcal/mol (301.8 without restraints) Performing minimization step: 1890. Total energy = 302.1 kcal/mol (301.7 without restraints) Performing minimization step: 1891. Total energy = 302.1 kcal/mol (301.7 without restraints) Performing minimization step: 1892. Total energy = 302.1 kcal/mol (301.7 without restraints) Performing minimization step: 1893. Total energy = 302 kcal/mol (301.6 without restraints) Performing minimization step: 1894. Total energy = 302 kcal/mol (301.6 without restraints) Performing minimization step: 1895. Total energy = 301.9 kcal/mol (301.5 without restraints) Performing minimization step: 1896. Total energy = 301.9 kcal/mol (301.5 without restraints) Performing minimization step: 1897. Total energy = 301.8 kcal/mol (301.4 without restraints) Performing minimization step: 1898. Total energy = 301.8 kcal/mol (301.4 without restraints) Performing minimization step: 1899. Total energy = 301.8 kcal/mol (301.4 without restraints) Performing minimization step: 1900. Total energy = 301.7 kcal/mol (301.3 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 301.7 kcal/mol (301.3 without restraints) Performing minimization step: 1902. Total energy = 301.6 kcal/mol (301.2 without restraints) Performing minimization step: 1903. Total energy = 301.6 kcal/mol (301.2 without restraints) Performing minimization step: 1904. Total energy = 301.6 kcal/mol (301.1 without restraints) Performing minimization step: 1905. Total energy = 301.5 kcal/mol (301.1 without restraints) Performing minimization step: 1906. Total energy = 301.5 kcal/mol (301.1 without restraints) Performing minimization step: 1907. Total energy = 301.4 kcal/mol (301 without restraints) Performing minimization step: 1908. Total energy = 301.4 kcal/mol (301 without restraints) Performing minimization step: 1909. Total energy = 301.3 kcal/mol (300.9 without restraints) Performing minimization step: 1910. Total energy = 301.3 kcal/mol (300.9 without restraints) Performing minimization step: 1911. Total energy = 301.3 kcal/mol (300.9 without restraints) Performing minimization step: 1912. Total energy = 301.2 kcal/mol (300.8 without restraints) Performing minimization step: 1913. Total energy = 301.2 kcal/mol (300.8 without restraints) Performing minimization step: 1914. Total energy = 301.1 kcal/mol (300.7 without restraints) Performing minimization step: 1915. Total energy = 301.1 kcal/mol (300.7 without restraints) Performing minimization step: 1916. Total energy = 301 kcal/mol (300.6 without restraints) Performing minimization step: 1917. Total energy = 301 kcal/mol (300.6 without restraints) Performing minimization step: 1918. Total energy = 301 kcal/mol (300.6 without restraints) Performing minimization step: 1919. Total energy = 300.9 kcal/mol (300.5 without restraints) Performing minimization step: 1920. Total energy = 300.9 kcal/mol (300.5 without restraints) Performing minimization step: 1921. Total energy = 300.8 kcal/mol (300.4 without restraints) Performing minimization step: 1922. Total energy = 300.8 kcal/mol (300.4 without restraints) Performing minimization step: 1923. Total energy = 300.8 kcal/mol (300.4 without restraints) Performing minimization step: 1924. Total energy = 300.7 kcal/mol (300.3 without restraints) Performing minimization step: 1925. Total energy = 300.7 kcal/mol (300.3 without restraints) Performing minimization step: 1926. Total energy = 300.6 kcal/mol (300.2 without restraints) Performing minimization step: 1927. Total energy = 300.6 kcal/mol (300.2 without restraints) Performing minimization step: 1928. Total energy = 300.5 kcal/mol (300.1 without restraints) Performing minimization step: 1929. Total energy = 300.5 kcal/mol (300.1 without restraints) Performing minimization step: 1930. Total energy = 300.5 kcal/mol (300.1 without restraints) Performing minimization step: 1931. Total energy = 300.4 kcal/mol (300 without restraints) Performing minimization step: 1932. Total energy = 300.4 kcal/mol (300 without restraints) Performing minimization step: 1933. Total energy = 300.3 kcal/mol (299.9 without restraints) Performing minimization step: 1934. Total energy = 300.3 kcal/mol (299.9 without restraints) Performing minimization step: 1935. Total energy = 300.3 kcal/mol (299.9 without restraints) Performing minimization step: 1936. Total energy = 300.2 kcal/mol (299.8 without restraints) Performing minimization step: 1937. Total energy = 300.2 kcal/mol (299.8 without restraints) Performing minimization step: 1938. Total energy = 300.1 kcal/mol (299.7 without restraints) Performing minimization step: 1939. Total energy = 300.1 kcal/mol (299.7 without restraints) Performing minimization step: 1940. Total energy = 300 kcal/mol (299.6 without restraints) Performing minimization step: 1941. Total energy = 300 kcal/mol (299.6 without restraints) Performing minimization step: 1942. Total energy = 300 kcal/mol (299.6 without restraints) Performing minimization step: 1943. Total energy = 299.9 kcal/mol (299.5 without restraints) Performing minimization step: 1944. Total energy = 299.9 kcal/mol (299.5 without restraints) Performing minimization step: 1945. Total energy = 299.8 kcal/mol (299.4 without restraints) Performing minimization step: 1946. Total energy = 299.8 kcal/mol (299.4 without restraints) Performing minimization step: 1947. Total energy = 299.8 kcal/mol (299.4 without restraints) Performing minimization step: 1948. Total energy = 299.7 kcal/mol (299.3 without restraints) Performing minimization step: 1949. Total energy = 299.7 kcal/mol (299.3 without restraints) Performing minimization step: 1950. Total energy = 299.6 kcal/mol (299.2 without restraints) Performing minimization step: 1951. Total energy = 299.6 kcal/mol (299.2 without restraints) Performing minimization step: 1952. Total energy = 299.6 kcal/mol (299.1 without restraints) Performing minimization step: 1953. Total energy = 299.5 kcal/mol (299.1 without restraints) Performing minimization step: 1954. Total energy = 299.5 kcal/mol (299.1 without restraints) Performing minimization step: 1955. Total energy = 299.4 kcal/mol (299 without restraints) Performing minimization step: 1956. Total energy = 299.4 kcal/mol (299 without restraints) Performing minimization step: 1957. Total energy = 299.3 kcal/mol (298.9 without restraints) Performing minimization step: 1958. Total energy = 299.3 kcal/mol (298.9 without restraints) Performing minimization step: 1959. Total energy = 299.3 kcal/mol (298.9 without restraints) Performing minimization step: 1960. Total energy = 299.2 kcal/mol (298.8 without restraints) Performing minimization step: 1961. Total energy = 299.2 kcal/mol (298.8 without restraints) Performing minimization step: 1962. Total energy = 299.1 kcal/mol (298.7 without restraints) Performing minimization step: 1963. Total energy = 299.1 kcal/mol (298.7 without restraints) Performing minimization step: 1964. Total energy = 299.1 kcal/mol (298.7 without restraints) Performing minimization step: 1965. Total energy = 299 kcal/mol (298.6 without restraints) Performing minimization step: 1966. Total energy = 299 kcal/mol (298.6 without restraints) Performing minimization step: 1967. Total energy = 298.9 kcal/mol (298.5 without restraints) Performing minimization step: 1968. Total energy = 298.9 kcal/mol (298.5 without restraints) Performing minimization step: 1969. Total energy = 298.9 kcal/mol (298.5 without restraints) Performing minimization step: 1970. Total energy = 298.8 kcal/mol (298.4 without restraints) Performing minimization step: 1971. Total energy = 298.8 kcal/mol (298.4 without restraints) Performing minimization step: 1972. Total energy = 298.7 kcal/mol (298.3 without restraints) Performing minimization step: 1973. Total energy = 298.7 kcal/mol (298.3 without restraints) Performing minimization step: 1974. Total energy = 298.7 kcal/mol (298.3 without restraints) Performing minimization step: 1975. Total energy = 298.6 kcal/mol (298.2 without restraints) Performing minimization step: 1976. Total energy = 298.6 kcal/mol (298.2 without restraints) Performing minimization step: 1977. Total energy = 298.5 kcal/mol (298.1 without restraints) Performing minimization step: 1978. Total energy = 298.5 kcal/mol (298.1 without restraints) Performing minimization step: 1979. Total energy = 298.5 kcal/mol (298.1 without restraints) Performing minimization step: 1980. Total energy = 298.4 kcal/mol (298 without restraints) Performing minimization step: 1981. Total energy = 298.4 kcal/mol (298 without restraints) Performing minimization step: 1982. Total energy = 298.3 kcal/mol (297.9 without restraints) Performing minimization step: 1983. Total energy = 298.3 kcal/mol (297.9 without restraints) Performing minimization step: 1984. Total energy = 298.3 kcal/mol (297.9 without restraints) Performing minimization step: 1985. Total energy = 298.2 kcal/mol (297.8 without restraints) Performing minimization step: 1986. Total energy = 298.2 kcal/mol (297.8 without restraints) Performing minimization step: 1987. Total energy = 298.1 kcal/mol (297.7 without restraints) Performing minimization step: 1988. Total energy = 298.1 kcal/mol (297.7 without restraints) Performing minimization step: 1989. Total energy = 298.1 kcal/mol (297.7 without restraints) Performing minimization step: 1990. Total energy = 298 kcal/mol (297.6 without restraints) Performing minimization step: 1991. Total energy = 298 kcal/mol (297.6 without restraints) Performing minimization step: 1992. Total energy = 297.9 kcal/mol (297.5 without restraints) Performing minimization step: 1993. Total energy = 297.9 kcal/mol (297.5 without restraints) Performing minimization step: 1994. Total energy = 297.9 kcal/mol (297.5 without restraints) Performing minimization step: 1995. Total energy = 297.8 kcal/mol (297.4 without restraints) Performing minimization step: 1996. Total energy = 297.8 kcal/mol (297.4 without restraints) Performing minimization step: 1997. Total energy = 297.7 kcal/mol (297.3 without restraints) Performing minimization step: 1998. Total energy = 297.7 kcal/mol (297.3 without restraints) Performing minimization step: 1999. Total energy = 297.7 kcal/mol (297.3 without restraints) Performing minimization step: 2000. Total energy = 297.6 kcal/mol (297.2 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 297.6 kcal/mol (297.2 without restraints) Performing minimization step: 2002. Total energy = 297.5 kcal/mol (297.1 without restraints) Performing minimization step: 2003. Total energy = 297.5 kcal/mol (297.1 without restraints) Performing minimization step: 2004. Total energy = 297.5 kcal/mol (297.1 without restraints) Performing minimization step: 2005. Total energy = 297.4 kcal/mol (297 without restraints) Performing minimization step: 2006. Total energy = 297.4 kcal/mol (297 without restraints) Performing minimization step: 2007. Total energy = 297.3 kcal/mol (296.9 without restraints) Performing minimization step: 2008. Total energy = 297.3 kcal/mol (296.9 without restraints) Performing minimization step: 2009. Total energy = 297.3 kcal/mol (296.9 without restraints) Performing minimization step: 2010. Total energy = 297.2 kcal/mol (296.8 without restraints) Performing minimization step: 2011. Total energy = 297.2 kcal/mol (296.8 without restraints) Performing minimization step: 2012. Total energy = 297.1 kcal/mol (296.7 without restraints) Performing minimization step: 2013. Total energy = 297.1 kcal/mol (296.7 without restraints) Performing minimization step: 2014. Total energy = 297.1 kcal/mol (296.7 without restraints) Performing minimization step: 2015. Total energy = 297 kcal/mol (296.6 without restraints) Performing minimization step: 2016. Total energy = 297 kcal/mol (296.6 without restraints) Performing minimization step: 2017. Total energy = 296.9 kcal/mol (296.5 without restraints) Performing minimization step: 2018. Total energy = 296.9 kcal/mol (296.5 without restraints) Performing minimization step: 2019. Total energy = 296.9 kcal/mol (296.5 without restraints) Performing minimization step: 2020. Total energy = 296.8 kcal/mol (296.4 without restraints) Performing minimization step: 2021. Total energy = 296.8 kcal/mol (296.4 without restraints) Performing minimization step: 2022. Total energy = 296.8 kcal/mol (296.3 without restraints) Performing minimization step: 2023. Total energy = 296.7 kcal/mol (296.3 without restraints) Performing minimization step: 2024. Total energy = 296.7 kcal/mol (296.3 without restraints) Performing minimization step: 2025. Total energy = 296.6 kcal/mol (296.2 without restraints) Performing minimization step: 2026. Total energy = 296.6 kcal/mol (296.2 without restraints) Performing minimization step: 2027. Total energy = 296.6 kcal/mol (296.2 without restraints) Performing minimization step: 2028. Total energy = 296.5 kcal/mol (296.1 without restraints) Performing minimization step: 2029. Total energy = 296.5 kcal/mol (296.1 without restraints) Performing minimization step: 2030. Total energy = 296.4 kcal/mol (296 without restraints) Performing minimization step: 2031. Total energy = 296.4 kcal/mol (296 without restraints) Performing minimization step: 2032. Total energy = 296.4 kcal/mol (296 without restraints) Performing minimization step: 2033. Total energy = 296.3 kcal/mol (295.9 without restraints) Performing minimization step: 2034. Total energy = 296.3 kcal/mol (295.9 without restraints) Performing minimization step: 2035. Total energy = 296.2 kcal/mol (295.8 without restraints) Performing minimization step: 2036. Total energy = 296.2 kcal/mol (295.8 without restraints) Performing minimization step: 2037. Total energy = 296.2 kcal/mol (295.8 without restraints) Performing minimization step: 2038. Total energy = 296.1 kcal/mol (295.7 without restraints) Performing minimization step: 2039. Total energy = 296.1 kcal/mol (295.7 without restraints) Performing minimization step: 2040. Total energy = 296.1 kcal/mol (295.6 without restraints) Performing minimization step: 2041. Total energy = 296 kcal/mol (295.6 without restraints) Performing minimization step: 2042. Total energy = 296 kcal/mol (295.6 without restraints) Performing minimization step: 2043. Total energy = 295.9 kcal/mol (295.5 without restraints) Performing minimization step: 2044. Total energy = 295.9 kcal/mol (295.5 without restraints) Performing minimization step: 2045. Total energy = 295.9 kcal/mol (295.5 without restraints) Performing minimization step: 2046. Total energy = 295.8 kcal/mol (295.4 without restraints) Performing minimization step: 2047. Total energy = 295.8 kcal/mol (295.4 without restraints) Performing minimization step: 2048. Total energy = 295.7 kcal/mol (295.3 without restraints) Performing minimization step: 2049. Total energy = 295.7 kcal/mol (295.3 without restraints) Performing minimization step: 2050. Total energy = 295.7 kcal/mol (295.3 without restraints) Performing minimization step: 2051. Total energy = 295.6 kcal/mol (295.2 without restraints) Performing minimization step: 2052. Total energy = 295.6 kcal/mol (295.2 without restraints) Performing minimization step: 2053. Total energy = 295.6 kcal/mol (295.1 without restraints) Performing minimization step: 2054. Total energy = 295.5 kcal/mol (295.1 without restraints) Performing minimization step: 2055. Total energy = 295.5 kcal/mol (295.1 without restraints) Performing minimization step: 2056. Total energy = 295.4 kcal/mol (295 without restraints) Performing minimization step: 2057. Total energy = 295.4 kcal/mol (295 without restraints) Performing minimization step: 2058. Total energy = 295.4 kcal/mol (295 without restraints) Performing minimization step: 2059. Total energy = 295.3 kcal/mol (294.9 without restraints) Performing minimization step: 2060. Total energy = 295.3 kcal/mol (294.9 without restraints) Performing minimization step: 2061. Total energy = 295.2 kcal/mol (294.8 without restraints) Performing minimization step: 2062. Total energy = 295.2 kcal/mol (294.8 without restraints) Performing minimization step: 2063. Total energy = 295.2 kcal/mol (294.8 without restraints) Performing minimization step: 2064. Total energy = 295.1 kcal/mol (294.7 without restraints) Performing minimization step: 2065. Total energy = 295.1 kcal/mol (294.7 without restraints) Performing minimization step: 2066. Total energy = 295.1 kcal/mol (294.6 without restraints) Performing minimization step: 2067. Total energy = 295 kcal/mol (294.6 without restraints) Performing minimization step: 2068. Total energy = 295 kcal/mol (294.6 without restraints) Performing minimization step: 2069. Total energy = 294.9 kcal/mol (294.5 without restraints) Performing minimization step: 2070. Total energy = 294.9 kcal/mol (294.5 without restraints) Performing minimization step: 2071. Total energy = 294.9 kcal/mol (294.5 without restraints) Performing minimization step: 2072. Total energy = 294.8 kcal/mol (294.4 without restraints) Performing minimization step: 2073. Total energy = 294.8 kcal/mol (294.4 without restraints) Performing minimization step: 2074. Total energy = 294.8 kcal/mol (294.3 without restraints) Performing minimization step: 2075. Total energy = 294.7 kcal/mol (294.3 without restraints) Performing minimization step: 2076. Total energy = 294.7 kcal/mol (294.3 without restraints) Performing minimization step: 2077. Total energy = 294.6 kcal/mol (294.2 without restraints) Performing minimization step: 2078. Total energy = 294.6 kcal/mol (294.2 without restraints) Performing minimization step: 2079. Total energy = 294.6 kcal/mol (294.2 without restraints) Performing minimization step: 2080. Total energy = 294.5 kcal/mol (294.1 without restraints) Performing minimization step: 2081. Total energy = 294.5 kcal/mol (294.1 without restraints) Performing minimization step: 2082. Total energy = 294.5 kcal/mol (294 without restraints) Performing minimization step: 2083. Total energy = 294.4 kcal/mol (294 without restraints) Performing minimization step: 2084. Total energy = 294.4 kcal/mol (294 without restraints) Performing minimization step: 2085. Total energy = 294.3 kcal/mol (293.9 without restraints) Performing minimization step: 2086. Total energy = 294.3 kcal/mol (293.9 without restraints) Performing minimization step: 2087. Total energy = 294.3 kcal/mol (293.9 without restraints) Performing minimization step: 2088. Total energy = 294.2 kcal/mol (293.8 without restraints) Performing minimization step: 2089. Total energy = 294.2 kcal/mol (293.8 without restraints) Performing minimization step: 2090. Total energy = 294.2 kcal/mol (293.7 without restraints) Performing minimization step: 2091. Total energy = 294.1 kcal/mol (293.7 without restraints) Performing minimization step: 2092. Total energy = 294.1 kcal/mol (293.7 without restraints) Performing minimization step: 2093. Total energy = 294 kcal/mol (293.6 without restraints) Performing minimization step: 2094. Total energy = 294 kcal/mol (293.6 without restraints) Performing minimization step: 2095. Total energy = 294 kcal/mol (293.6 without restraints) Performing minimization step: 2096. Total energy = 293.9 kcal/mol (293.5 without restraints) Performing minimization step: 2097. Total energy = 293.9 kcal/mol (293.5 without restraints) Performing minimization step: 2098. Total energy = 293.9 kcal/mol (293.4 without restraints) Performing minimization step: 2099. Total energy = 293.8 kcal/mol (293.4 without restraints) Performing minimization step: 2100. Total energy = 293.8 kcal/mol (293.4 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 293.7 kcal/mol (293.3 without restraints) Performing minimization step: 2102. Total energy = 293.7 kcal/mol (293.3 without restraints) Performing minimization step: 2103. Total energy = 293.7 kcal/mol (293.3 without restraints) Performing minimization step: 2104. Total energy = 293.6 kcal/mol (293.2 without restraints) Performing minimization step: 2105. Total energy = 293.6 kcal/mol (293.2 without restraints) Performing minimization step: 2106. Total energy = 293.6 kcal/mol (293.2 without restraints) Performing minimization step: 2107. Total energy = 293.5 kcal/mol (293.1 without restraints) Performing minimization step: 2108. Total energy = 293.5 kcal/mol (293.1 without restraints) Performing minimization step: 2109. Total energy = 293.4 kcal/mol (293 without restraints) Performing minimization step: 2110. Total energy = 293.4 kcal/mol (293 without restraints) Performing minimization step: 2111. Total energy = 293.4 kcal/mol (293 without restraints) Performing minimization step: 2112. Total energy = 293.3 kcal/mol (292.9 without restraints) Performing minimization step: 2113. Total energy = 293.3 kcal/mol (292.9 without restraints) Performing minimization step: 2114. Total energy = 293.3 kcal/mol (292.9 without restraints) Performing minimization step: 2115. Total energy = 293.2 kcal/mol (292.8 without restraints) Performing minimization step: 2116. Total energy = 293.2 kcal/mol (292.8 without restraints) Performing minimization step: 2117. Total energy = 293.2 kcal/mol (292.7 without restraints) Performing minimization step: 2118. Total energy = 293.1 kcal/mol (292.7 without restraints) Performing minimization step: 2119. Total energy = 293.1 kcal/mol (292.7 without restraints) Performing minimization step: 2120. Total energy = 293 kcal/mol (292.6 without restraints) Performing minimization step: 2121. Total energy = 293 kcal/mol (292.6 without restraints) Performing minimization step: 2122. Total energy = 293 kcal/mol (292.6 without restraints) Performing minimization step: 2123. Total energy = 292.9 kcal/mol (292.5 without restraints) Performing minimization step: 2124. Total energy = 292.9 kcal/mol (292.5 without restraints) Performing minimization step: 2125. Total energy = 292.9 kcal/mol (292.5 without restraints) Performing minimization step: 2126. Total energy = 292.8 kcal/mol (292.4 without restraints) Performing minimization step: 2127. Total energy = 292.8 kcal/mol (292.4 without restraints) Performing minimization step: 2128. Total energy = 292.8 kcal/mol (292.3 without restraints) Performing minimization step: 2129. Total energy = 292.7 kcal/mol (292.3 without restraints) Performing minimization step: 2130. Total energy = 292.7 kcal/mol (292.3 without restraints) Performing minimization step: 2131. Total energy = 292.6 kcal/mol (292.2 without restraints) Performing minimization step: 2132. Total energy = 292.6 kcal/mol (292.2 without restraints) Performing minimization step: 2133. Total energy = 292.6 kcal/mol (292.2 without restraints) Performing minimization step: 2134. Total energy = 292.5 kcal/mol (292.1 without restraints) Performing minimization step: 2135. Total energy = 292.5 kcal/mol (292.1 without restraints) Performing minimization step: 2136. Total energy = 292.5 kcal/mol (292.1 without restraints) Performing minimization step: 2137. Total energy = 292.4 kcal/mol (292 without restraints) Performing minimization step: 2138. Total energy = 292.4 kcal/mol (292 without restraints) Performing minimization step: 2139. Total energy = 292.4 kcal/mol (291.9 without restraints) Performing minimization step: 2140. Total energy = 292.3 kcal/mol (291.9 without restraints) Performing minimization step: 2141. Total energy = 292.3 kcal/mol (291.9 without restraints) Performing minimization step: 2142. Total energy = 292.2 kcal/mol (291.8 without restraints) Performing minimization step: 2143. Total energy = 292.2 kcal/mol (291.8 without restraints) Performing minimization step: 2144. Total energy = 292.2 kcal/mol (291.8 without restraints) Performing minimization step: 2145. Total energy = 292.1 kcal/mol (291.7 without restraints) Performing minimization step: 2146. Total energy = 292.1 kcal/mol (291.7 without restraints) Performing minimization step: 2147. Total energy = 292.1 kcal/mol (291.7 without restraints) Performing minimization step: 2148. Total energy = 292 kcal/mol (291.6 without restraints) Performing minimization step: 2149. Total energy = 292 kcal/mol (291.6 without restraints) Performing minimization step: 2150. Total energy = 292 kcal/mol (291.5 without restraints) Performing minimization step: 2151. Total energy = 291.9 kcal/mol (291.5 without restraints) Performing minimization step: 2152. Total energy = 291.9 kcal/mol (291.5 without restraints) Performing minimization step: 2153. Total energy = 291.9 kcal/mol (291.4 without restraints) Performing minimization step: 2154. Total energy = 291.8 kcal/mol (291.4 without restraints) Performing minimization step: 2155. Total energy = 291.8 kcal/mol (291.4 without restraints) Performing minimization step: 2156. Total energy = 291.7 kcal/mol (291.3 without restraints) Performing minimization step: 2157. Total energy = 291.7 kcal/mol (291.3 without restraints) Performing minimization step: 2158. Total energy = 291.7 kcal/mol (291.3 without restraints) Performing minimization step: 2159. Total energy = 291.6 kcal/mol (291.2 without restraints) Performing minimization step: 2160. Total energy = 291.6 kcal/mol (291.2 without restraints) Performing minimization step: 2161. Total energy = 291.6 kcal/mol (291.2 without restraints) Performing minimization step: 2162. Total energy = 291.5 kcal/mol (291.1 without restraints) Performing minimization step: 2163. Total energy = 291.5 kcal/mol (291.1 without restraints) Performing minimization step: 2164. Total energy = 291.5 kcal/mol (291 without restraints) Performing minimization step: 2165. Total energy = 291.4 kcal/mol (291 without restraints) Performing minimization step: 2166. Total energy = 291.4 kcal/mol (291 without restraints) Performing minimization step: 2167. Total energy = 291.4 kcal/mol (290.9 without restraints) Performing minimization step: 2168. Total energy = 291.3 kcal/mol (290.9 without restraints) Performing minimization step: 2169. Total energy = 291.3 kcal/mol (290.9 without restraints) Performing minimization step: 2170. Total energy = 291.2 kcal/mol (290.8 without restraints) Performing minimization step: 2171. Total energy = 291.2 kcal/mol (290.8 without restraints) Performing minimization step: 2172. Total energy = 291.2 kcal/mol (290.8 without restraints) Performing minimization step: 2173. Total energy = 291.1 kcal/mol (290.7 without restraints) Performing minimization step: 2174. Total energy = 291.1 kcal/mol (290.7 without restraints) Performing minimization step: 2175. Total energy = 291.1 kcal/mol (290.7 without restraints) Performing minimization step: 2176. Total energy = 291 kcal/mol (290.6 without restraints) Performing minimization step: 2177. Total energy = 291 kcal/mol (290.6 without restraints) Performing minimization step: 2178. Total energy = 291 kcal/mol (290.5 without restraints) Performing minimization step: 2179. Total energy = 290.9 kcal/mol (290.5 without restraints) Performing minimization step: 2180. Total energy = 290.9 kcal/mol (290.5 without restraints) Performing minimization step: 2181. Total energy = 290.9 kcal/mol (290.4 without restraints) Performing minimization step: 2182. Total energy = 290.8 kcal/mol (290.4 without restraints) Performing minimization step: 2183. Total energy = 290.8 kcal/mol (290.4 without restraints) Performing minimization step: 2184. Total energy = 290.8 kcal/mol (290.3 without restraints) Performing minimization step: 2185. Total energy = 290.7 kcal/mol (290.3 without restraints) Performing minimization step: 2186. Total energy = 290.7 kcal/mol (290.3 without restraints) Performing minimization step: 2187. Total energy = 290.6 kcal/mol (290.2 without restraints) Performing minimization step: 2188. Total energy = 290.6 kcal/mol (290.2 without restraints) Performing minimization step: 2189. Total energy = 290.6 kcal/mol (290.2 without restraints) Performing minimization step: 2190. Total energy = 290.5 kcal/mol (290.1 without restraints) Performing minimization step: 2191. Total energy = 290.5 kcal/mol (290.1 without restraints) Performing minimization step: 2192. Total energy = 290.5 kcal/mol (290.1 without restraints) Performing minimization step: 2193. Total energy = 290.4 kcal/mol (290 without restraints) Performing minimization step: 2194. Total energy = 290.4 kcal/mol (290 without restraints) Performing minimization step: 2195. Total energy = 290.4 kcal/mol (289.9 without restraints) Performing minimization step: 2196. Total energy = 290.3 kcal/mol (289.9 without restraints) Performing minimization step: 2197. Total energy = 290.3 kcal/mol (289.9 without restraints) Performing minimization step: 2198. Total energy = 290.3 kcal/mol (289.8 without restraints) Performing minimization step: 2199. Total energy = 290.2 kcal/mol (289.8 without restraints) Performing minimization step: 2200. Total energy = 290.2 kcal/mol (289.8 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 290.2 kcal/mol (289.7 without restraints) Performing minimization step: 2202. Total energy = 290.1 kcal/mol (289.7 without restraints) Performing minimization step: 2203. Total energy = 290.1 kcal/mol (289.7 without restraints) Performing minimization step: 2204. Total energy = 290.1 kcal/mol (289.6 without restraints) Performing minimization step: 2205. Total energy = 290 kcal/mol (289.6 without restraints) Performing minimization step: 2206. Total energy = 290 kcal/mol (289.6 without restraints) Performing minimization step: 2207. Total energy = 289.9 kcal/mol (289.5 without restraints) Performing minimization step: 2208. Total energy = 289.9 kcal/mol (289.5 without restraints) Performing minimization step: 2209. Total energy = 289.9 kcal/mol (289.5 without restraints) Performing minimization step: 2210. Total energy = 289.8 kcal/mol (289.4 without restraints) Performing minimization step: 2211. Total energy = 289.8 kcal/mol (289.4 without restraints) Performing minimization step: 2212. Total energy = 289.8 kcal/mol (289.4 without restraints) Performing minimization step: 2213. Total energy = 289.7 kcal/mol (289.3 without restraints) Performing minimization step: 2214. Total energy = 289.7 kcal/mol (289.3 without restraints) Performing minimization step: 2215. Total energy = 289.7 kcal/mol (289.3 without restraints) Performing minimization step: 2216. Total energy = 289.6 kcal/mol (289.2 without restraints) Performing minimization step: 2217. Total energy = 289.6 kcal/mol (289.2 without restraints) Performing minimization step: 2218. Total energy = 289.6 kcal/mol (289.2 without restraints) Performing minimization step: 2219. Total energy = 289.5 kcal/mol (289.1 without restraints) Performing minimization step: 2220. Total energy = 289.5 kcal/mol (289.1 without restraints) Performing minimization step: 2221. Total energy = 289.5 kcal/mol (289 without restraints) Performing minimization step: 2222. Total energy = 289.4 kcal/mol (289 without restraints) Performing minimization step: 2223. Total energy = 289.4 kcal/mol (289 without restraints) Performing minimization step: 2224. Total energy = 289.4 kcal/mol (288.9 without restraints) Performing minimization step: 2225. Total energy = 289.3 kcal/mol (288.9 without restraints) Performing minimization step: 2226. Total energy = 289.3 kcal/mol (288.9 without restraints) Performing minimization step: 2227. Total energy = 289.3 kcal/mol (288.8 without restraints) Performing minimization step: 2228. Total energy = 289.2 kcal/mol (288.8 without restraints) Performing minimization step: 2229. Total energy = 289.2 kcal/mol (288.8 without restraints) Performing minimization step: 2230. Total energy = 289.2 kcal/mol (288.7 without restraints) Performing minimization step: 2231. Total energy = 289.1 kcal/mol (288.7 without restraints) Performing minimization step: 2232. Total energy = 289.1 kcal/mol (288.7 without restraints) Performing minimization step: 2233. Total energy = 289.1 kcal/mol (288.6 without restraints) Performing minimization step: 2234. Total energy = 289 kcal/mol (288.6 without restraints) Performing minimization step: 2235. Total energy = 289 kcal/mol (288.6 without restraints) Performing minimization step: 2236. Total energy = 289 kcal/mol (288.5 without restraints) Performing minimization step: 2237. Total energy = 288.9 kcal/mol (288.5 without restraints) Performing minimization step: 2238. Total energy = 288.9 kcal/mol (288.5 without restraints) Performing minimization step: 2239. Total energy = 288.9 kcal/mol (288.4 without restraints) Performing minimization step: 2240. Total energy = 288.8 kcal/mol (288.4 without restraints) Performing minimization step: 2241. Total energy = 288.8 kcal/mol (288.4 without restraints) Performing minimization step: 2242. Total energy = 288.8 kcal/mol (288.3 without restraints) Performing minimization step: 2243. Total energy = 288.7 kcal/mol (288.3 without restraints) Performing minimization step: 2244. Total energy = 288.7 kcal/mol (288.3 without restraints) Performing minimization step: 2245. Total energy = 288.6 kcal/mol (288.2 without restraints) Performing minimization step: 2246. Total energy = 288.6 kcal/mol (288.2 without restraints) Performing minimization step: 2247. Total energy = 288.6 kcal/mol (288.2 without restraints) Performing minimization step: 2248. Total energy = 288.5 kcal/mol (288.1 without restraints) Performing minimization step: 2249. Total energy = 288.5 kcal/mol (288.1 without restraints) Performing minimization step: 2250. Total energy = 288.5 kcal/mol (288.1 without restraints) Performing minimization step: 2251. Total energy = 288.4 kcal/mol (288 without restraints) Performing minimization step: 2252. Total energy = 288.4 kcal/mol (288 without restraints) Performing minimization step: 2253. Total energy = 288.4 kcal/mol (288 without restraints) Performing minimization step: 2254. Total energy = 288.3 kcal/mol (287.9 without restraints) Performing minimization step: 2255. Total energy = 288.3 kcal/mol (287.9 without restraints) Performing minimization step: 2256. Total energy = 288.3 kcal/mol (287.9 without restraints) Performing minimization step: 2257. Total energy = 288.2 kcal/mol (287.8 without restraints) Performing minimization step: 2258. Total energy = 288.2 kcal/mol (287.8 without restraints) Performing minimization step: 2259. Total energy = 288.2 kcal/mol (287.8 without restraints) Performing minimization step: 2260. Total energy = 288.1 kcal/mol (287.7 without restraints) Performing minimization step: 2261. Total energy = 288.1 kcal/mol (287.7 without restraints) Performing minimization step: 2262. Total energy = 288.1 kcal/mol (287.7 without restraints) Performing minimization step: 2263. Total energy = 288 kcal/mol (287.6 without restraints) Performing minimization step: 2264. Total energy = 288 kcal/mol (287.6 without restraints) Performing minimization step: 2265. Total energy = 288 kcal/mol (287.6 without restraints) Performing minimization step: 2266. Total energy = 287.9 kcal/mol (287.5 without restraints) Performing minimization step: 2267. Total energy = 287.9 kcal/mol (287.5 without restraints) Performing minimization step: 2268. Total energy = 287.9 kcal/mol (287.5 without restraints) Performing minimization step: 2269. Total energy = 287.8 kcal/mol (287.4 without restraints) Performing minimization step: 2270. Total energy = 287.8 kcal/mol (287.4 without restraints) Performing minimization step: 2271. Total energy = 287.8 kcal/mol (287.4 without restraints) Performing minimization step: 2272. Total energy = 287.7 kcal/mol (287.3 without restraints) Performing minimization step: 2273. Total energy = 287.7 kcal/mol (287.3 without restraints) Performing minimization step: 2274. Total energy = 287.7 kcal/mol (287.3 without restraints) Performing minimization step: 2275. Total energy = 287.6 kcal/mol (287.2 without restraints) Performing minimization step: 2276. Total energy = 287.6 kcal/mol (287.2 without restraints) Performing minimization step: 2277. Total energy = 287.6 kcal/mol (287.2 without restraints) Performing minimization step: 2278. Total energy = 287.5 kcal/mol (287.1 without restraints) Performing minimization step: 2279. Total energy = 287.5 kcal/mol (287.1 without restraints) Performing minimization step: 2280. Total energy = 287.5 kcal/mol (287.1 without restraints) Performing minimization step: 2281. Total energy = 287.4 kcal/mol (287 without restraints) Performing minimization step: 2282. Total energy = 287.4 kcal/mol (287 without restraints) Performing minimization step: 2283. Total energy = 287.4 kcal/mol (287 without restraints) Performing minimization step: 2284. Total energy = 287.3 kcal/mol (286.9 without restraints) Performing minimization step: 2285. Total energy = 287.3 kcal/mol (286.9 without restraints) Performing minimization step: 2286. Total energy = 287.3 kcal/mol (286.9 without restraints) Performing minimization step: 2287. Total energy = 287.3 kcal/mol (286.8 without restraints) Performing minimization step: 2288. Total energy = 287.2 kcal/mol (286.8 without restraints) Performing minimization step: 2289. Total energy = 287.2 kcal/mol (286.8 without restraints) Performing minimization step: 2290. Total energy = 287.2 kcal/mol (286.7 without restraints) Performing minimization step: 2291. Total energy = 287.1 kcal/mol (286.7 without restraints) Performing minimization step: 2292. Total energy = 287.1 kcal/mol (286.7 without restraints) Performing minimization step: 2293. Total energy = 287.1 kcal/mol (286.6 without restraints) Performing minimization step: 2294. Total energy = 287 kcal/mol (286.6 without restraints) Performing minimization step: 2295. Total energy = 287 kcal/mol (286.6 without restraints) Performing minimization step: 2296. Total energy = 287 kcal/mol (286.5 without restraints) Performing minimization step: 2297. Total energy = 286.9 kcal/mol (286.5 without restraints) Performing minimization step: 2298. Total energy = 286.9 kcal/mol (286.5 without restraints) Performing minimization step: 2299. Total energy = 286.9 kcal/mol (286.4 without restraints) Performing minimization step: 2300. Total energy = 286.8 kcal/mol (286.4 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 286.8 kcal/mol (286.4 without restraints) Performing minimization step: 2302. Total energy = 286.8 kcal/mol (286.3 without restraints) Performing minimization step: 2303. Total energy = 286.7 kcal/mol (286.3 without restraints) Performing minimization step: 2304. Total energy = 286.7 kcal/mol (286.3 without restraints) Performing minimization step: 2305. Total energy = 286.7 kcal/mol (286.2 without restraints) Performing minimization step: 2306. Total energy = 286.6 kcal/mol (286.2 without restraints) Performing minimization step: 2307. Total energy = 286.6 kcal/mol (286.2 without restraints) Performing minimization step: 2308. Total energy = 286.6 kcal/mol (286.1 without restraints) Performing minimization step: 2309. Total energy = 286.5 kcal/mol (286.1 without restraints) Performing minimization step: 2310. Total energy = 286.5 kcal/mol (286.1 without restraints) Performing minimization step: 2311. Total energy = 286.5 kcal/mol (286 without restraints) Performing minimization step: 2312. Total energy = 286.4 kcal/mol (286 without restraints) Performing minimization step: 2313. Total energy = 286.4 kcal/mol (286 without restraints) Performing minimization step: 2314. Total energy = 286.4 kcal/mol (285.9 without restraints) Performing minimization step: 2315. Total energy = 286.3 kcal/mol (285.9 without restraints) Performing minimization step: 2316. Total energy = 286.3 kcal/mol (285.9 without restraints) Performing minimization step: 2317. Total energy = 286.3 kcal/mol (285.8 without restraints) Performing minimization step: 2318. Total energy = 286.2 kcal/mol (285.8 without restraints) Performing minimization step: 2319. Total energy = 286.2 kcal/mol (285.8 without restraints) Performing minimization step: 2320. Total energy = 286.2 kcal/mol (285.8 without restraints) Performing minimization step: 2321. Total energy = 286.1 kcal/mol (285.7 without restraints) Performing minimization step: 2322. Total energy = 286.1 kcal/mol (285.7 without restraints) Performing minimization step: 2323. Total energy = 286.1 kcal/mol (285.7 without restraints) Performing minimization step: 2324. Total energy = 286 kcal/mol (285.6 without restraints) Performing minimization step: 2325. Total energy = 286 kcal/mol (285.6 without restraints) Performing minimization step: 2326. Total energy = 286 kcal/mol (285.6 without restraints) Performing minimization step: 2327. Total energy = 286 kcal/mol (285.5 without restraints) Performing minimization step: 2328. Total energy = 285.9 kcal/mol (285.5 without restraints) Performing minimization step: 2329. Total energy = 285.9 kcal/mol (285.5 without restraints) Performing minimization step: 2330. Total energy = 285.9 kcal/mol (285.4 without restraints) Performing minimization step: 2331. Total energy = 285.8 kcal/mol (285.4 without restraints) Performing minimization step: 2332. Total energy = 285.8 kcal/mol (285.4 without restraints) Performing minimization step: 2333. Total energy = 285.8 kcal/mol (285.3 without restraints) Performing minimization step: 2334. Total energy = 285.7 kcal/mol (285.3 without restraints) Performing minimization step: 2335. Total energy = 285.7 kcal/mol (285.3 without restraints) Performing minimization step: 2336. Total energy = 285.7 kcal/mol (285.2 without restraints) Performing minimization step: 2337. Total energy = 285.6 kcal/mol (285.2 without restraints) Performing minimization step: 2338. Total energy = 285.6 kcal/mol (285.2 without restraints) Performing minimization step: 2339. Total energy = 285.6 kcal/mol (285.1 without restraints) Performing minimization step: 2340. Total energy = 285.5 kcal/mol (285.1 without restraints) Performing minimization step: 2341. Total energy = 285.5 kcal/mol (285.1 without restraints) Performing minimization step: 2342. Total energy = 285.5 kcal/mol (285 without restraints) Performing minimization step: 2343. Total energy = 285.4 kcal/mol (285 without restraints) Performing minimization step: 2344. Total energy = 285.4 kcal/mol (285 without restraints) Performing minimization step: 2345. Total energy = 285.4 kcal/mol (285 without restraints) Performing minimization step: 2346. Total energy = 285.3 kcal/mol (284.9 without restraints) Performing minimization step: 2347. Total energy = 285.3 kcal/mol (284.9 without restraints) Performing minimization step: 2348. Total energy = 285.3 kcal/mol (284.9 without restraints) Performing minimization step: 2349. Total energy = 285.3 kcal/mol (284.8 without restraints) Performing minimization step: 2350. Total energy = 285.2 kcal/mol (284.8 without restraints) Performing minimization step: 2351. Total energy = 285.2 kcal/mol (284.8 without restraints) Performing minimization step: 2352. Total energy = 285.2 kcal/mol (284.7 without restraints) Performing minimization step: 2353. Total energy = 285.1 kcal/mol (284.7 without restraints) Performing minimization step: 2354. Total energy = 285.1 kcal/mol (284.7 without restraints) Performing minimization step: 2355. Total energy = 285.1 kcal/mol (284.6 without restraints) Performing minimization step: 2356. Total energy = 285 kcal/mol (284.6 without restraints) Performing minimization step: 2357. Total energy = 285 kcal/mol (284.6 without restraints) Performing minimization step: 2358. Total energy = 285 kcal/mol (284.5 without restraints) Performing minimization step: 2359. Total energy = 284.9 kcal/mol (284.5 without restraints) Performing minimization step: 2360. Total energy = 284.9 kcal/mol (284.5 without restraints) Performing minimization step: 2361. Total energy = 284.9 kcal/mol (284.4 without restraints) Performing minimization step: 2362. Total energy = 284.8 kcal/mol (284.4 without restraints) Performing minimization step: 2363. Total energy = 284.8 kcal/mol (284.4 without restraints) Performing minimization step: 2364. Total energy = 284.8 kcal/mol (284.4 without restraints) Performing minimization step: 2365. Total energy = 284.8 kcal/mol (284.3 without restraints) Performing minimization step: 2366. Total energy = 284.7 kcal/mol (284.3 without restraints) Performing minimization step: 2367. Total energy = 284.7 kcal/mol (284.3 without restraints) Performing minimization step: 2368. Total energy = 284.7 kcal/mol (284.2 without restraints) Performing minimization step: 2369. Total energy = 284.6 kcal/mol (284.2 without restraints) Performing minimization step: 2370. Total energy = 284.6 kcal/mol (284.2 without restraints) Performing minimization step: 2371. Total energy = 284.6 kcal/mol (284.1 without restraints) Performing minimization step: 2372. Total energy = 284.5 kcal/mol (284.1 without restraints) Performing minimization step: 2373. Total energy = 284.5 kcal/mol (284.1 without restraints) Performing minimization step: 2374. Total energy = 284.5 kcal/mol (284 without restraints) Performing minimization step: 2375. Total energy = 284.4 kcal/mol (284 without restraints) Performing minimization step: 2376. Total energy = 284.4 kcal/mol (284 without restraints) Performing minimization step: 2377. Total energy = 284.4 kcal/mol (283.9 without restraints) Performing minimization step: 2378. Total energy = 284.3 kcal/mol (283.9 without restraints) Performing minimization step: 2379. Total energy = 284.3 kcal/mol (283.9 without restraints) Performing minimization step: 2380. Total energy = 284.3 kcal/mol (283.9 without restraints) Performing minimization step: 2381. Total energy = 284.3 kcal/mol (283.8 without restraints) Performing minimization step: 2382. Total energy = 284.2 kcal/mol (283.8 without restraints) Performing minimization step: 2383. Total energy = 284.2 kcal/mol (283.8 without restraints) Performing minimization step: 2384. Total energy = 284.2 kcal/mol (283.7 without restraints) Performing minimization step: 2385. Total energy = 284.1 kcal/mol (283.7 without restraints) Performing minimization step: 2386. Total energy = 284.1 kcal/mol (283.7 without restraints) Performing minimization step: 2387. Total energy = 284.1 kcal/mol (283.6 without restraints) Performing minimization step: 2388. Total energy = 284 kcal/mol (283.6 without restraints) Performing minimization step: 2389. Total energy = 284 kcal/mol (283.6 without restraints) Performing minimization step: 2390. Total energy = 284 kcal/mol (283.5 without restraints) Performing minimization step: 2391. Total energy = 283.9 kcal/mol (283.5 without restraints) Performing minimization step: 2392. Total energy = 283.9 kcal/mol (283.5 without restraints) Performing minimization step: 2393. Total energy = 283.9 kcal/mol (283.5 without restraints) Performing minimization step: 2394. Total energy = 283.9 kcal/mol (283.4 without restraints) Performing minimization step: 2395. Total energy = 283.8 kcal/mol (283.4 without restraints) Performing minimization step: 2396. Total energy = 283.8 kcal/mol (283.4 without restraints) Performing minimization step: 2397. Total energy = 283.8 kcal/mol (283.3 without restraints) Performing minimization step: 2398. Total energy = 283.7 kcal/mol (283.3 without restraints) Performing minimization step: 2399. Total energy = 283.7 kcal/mol (283.3 without restraints) Performing minimization step: 2400. Total energy = 283.7 kcal/mol (283.2 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 283.6 kcal/mol (283.2 without restraints) Performing minimization step: 2402. Total energy = 283.6 kcal/mol (283.2 without restraints) Performing minimization step: 2403. Total energy = 283.6 kcal/mol (283.1 without restraints) Performing minimization step: 2404. Total energy = 283.5 kcal/mol (283.1 without restraints) Performing minimization step: 2405. Total energy = 283.5 kcal/mol (283.1 without restraints) Performing minimization step: 2406. Total energy = 283.5 kcal/mol (283.1 without restraints) Performing minimization step: 2407. Total energy = 283.5 kcal/mol (283 without restraints) Performing minimization step: 2408. Total energy = 283.4 kcal/mol (283 without restraints) Performing minimization step: 2409. Total energy = 283.4 kcal/mol (283 without restraints) Performing minimization step: 2410. Total energy = 283.4 kcal/mol (282.9 without restraints) Performing minimization step: 2411. Total energy = 283.3 kcal/mol (282.9 without restraints) Performing minimization step: 2412. Total energy = 283.3 kcal/mol (282.9 without restraints) Performing minimization step: 2413. Total energy = 283.3 kcal/mol (282.8 without restraints) Performing minimization step: 2414. Total energy = 283.2 kcal/mol (282.8 without restraints) Performing minimization step: 2415. Total energy = 283.2 kcal/mol (282.8 without restraints) Performing minimization step: 2416. Total energy = 283.2 kcal/mol (282.7 without restraints) Performing minimization step: 2417. Total energy = 283.2 kcal/mol (282.7 without restraints) Performing minimization step: 2418. Total energy = 283.1 kcal/mol (282.7 without restraints) Performing minimization step: 2419. Total energy = 283.1 kcal/mol (282.7 without restraints) Performing minimization step: 2420. Total energy = 283.1 kcal/mol (282.6 without restraints) Performing minimization step: 2421. Total energy = 283 kcal/mol (282.6 without restraints) Performing minimization step: 2422. Total energy = 283 kcal/mol (282.6 without restraints) Performing minimization step: 2423. Total energy = 283 kcal/mol (282.5 without restraints) Performing minimization step: 2424. Total energy = 282.9 kcal/mol (282.5 without restraints) Performing minimization step: 2425. Total energy = 282.9 kcal/mol (282.5 without restraints) Performing minimization step: 2426. Total energy = 282.9 kcal/mol (282.4 without restraints) Performing minimization step: 2427. Total energy = 282.9 kcal/mol (282.4 without restraints) Performing minimization step: 2428. Total energy = 282.8 kcal/mol (282.4 without restraints) Performing minimization step: 2429. Total energy = 282.8 kcal/mol (282.4 without restraints) Performing minimization step: 2430. Total energy = 282.8 kcal/mol (282.3 without restraints) Performing minimization step: 2431. Total energy = 282.7 kcal/mol (282.3 without restraints) Performing minimization step: 2432. Total energy = 282.7 kcal/mol (282.3 without restraints) Performing minimization step: 2433. Total energy = 282.7 kcal/mol (282.2 without restraints) Performing minimization step: 2434. Total energy = 282.6 kcal/mol (282.2 without restraints) Performing minimization step: 2435. Total energy = 282.6 kcal/mol (282.2 without restraints) Performing minimization step: 2436. Total energy = 282.6 kcal/mol (282.1 without restraints) Performing minimization step: 2437. Total energy = 282.6 kcal/mol (282.1 without restraints) Performing minimization step: 2438. Total energy = 282.5 kcal/mol (282.1 without restraints) Performing minimization step: 2439. Total energy = 282.5 kcal/mol (282.1 without restraints) Performing minimization step: 2440. Total energy = 282.5 kcal/mol (282 without restraints) Performing minimization step: 2441. Total energy = 282.4 kcal/mol (282 without restraints) Performing minimization step: 2442. Total energy = 282.4 kcal/mol (282 without restraints) Performing minimization step: 2443. Total energy = 282.4 kcal/mol (281.9 without restraints) Performing minimization step: 2444. Total energy = 282.3 kcal/mol (281.9 without restraints) Performing minimization step: 2445. Total energy = 282.3 kcal/mol (281.9 without restraints) Performing minimization step: 2446. Total energy = 282.3 kcal/mol (281.8 without restraints) Performing minimization step: 2447. Total energy = 282.3 kcal/mol (281.8 without restraints) Performing minimization step: 2448. Total energy = 282.2 kcal/mol (281.8 without restraints) Performing minimization step: 2449. Total energy = 282.2 kcal/mol (281.8 without restraints) Performing minimization step: 2450. Total energy = 282.2 kcal/mol (281.7 without restraints) Performing minimization step: 2451. Total energy = 282.1 kcal/mol (281.7 without restraints) Performing minimization step: 2452. Total energy = 282.1 kcal/mol (281.7 without restraints) Performing minimization step: 2453. Total energy = 282.1 kcal/mol (281.6 without restraints) Performing minimization step: 2454. Total energy = 282 kcal/mol (281.6 without restraints) Performing minimization step: 2455. Total energy = 282 kcal/mol (281.6 without restraints) Performing minimization step: 2456. Total energy = 282 kcal/mol (281.6 without restraints) Performing minimization step: 2457. Total energy = 282 kcal/mol (281.5 without restraints) Performing minimization step: 2458. Total energy = 281.9 kcal/mol (281.5 without restraints) Performing minimization step: 2459. Total energy = 281.9 kcal/mol (281.5 without restraints) Performing minimization step: 2460. Total energy = 281.9 kcal/mol (281.4 without restraints) Performing minimization step: 2461. Total energy = 281.8 kcal/mol (281.4 without restraints) Performing minimization step: 2462. Total energy = 281.8 kcal/mol (281.4 without restraints) Performing minimization step: 2463. Total energy = 281.8 kcal/mol (281.3 without restraints) Performing minimization step: 2464. Total energy = 281.8 kcal/mol (281.3 without restraints) Performing minimization step: 2465. Total energy = 281.7 kcal/mol (281.3 without restraints) Performing minimization step: 2466. Total energy = 281.7 kcal/mol (281.3 without restraints) Performing minimization step: 2467. Total energy = 281.7 kcal/mol (281.2 without restraints) Performing minimization step: 2468. Total energy = 281.6 kcal/mol (281.2 without restraints) Performing minimization step: 2469. Total energy = 281.6 kcal/mol (281.2 without restraints) Performing minimization step: 2470. Total energy = 281.6 kcal/mol (281.1 without restraints) Performing minimization step: 2471. Total energy = 281.5 kcal/mol (281.1 without restraints) Performing minimization step: 2472. Total energy = 281.5 kcal/mol (281.1 without restraints) Performing minimization step: 2473. Total energy = 281.5 kcal/mol (281.1 without restraints) Performing minimization step: 2474. Total energy = 281.5 kcal/mol (281 without restraints) Performing minimization step: 2475. Total energy = 281.4 kcal/mol (281 without restraints) Performing minimization step: 2476. Total energy = 281.4 kcal/mol (281 without restraints) Performing minimization step: 2477. Total energy = 281.4 kcal/mol (280.9 without restraints) Performing minimization step: 2478. Total energy = 281.3 kcal/mol (280.9 without restraints) Performing minimization step: 2479. Total energy = 281.3 kcal/mol (280.9 without restraints) Performing minimization step: 2480. Total energy = 281.3 kcal/mol (280.8 without restraints) Performing minimization step: 2481. Total energy = 281.3 kcal/mol (280.8 without restraints) Performing minimization step: 2482. Total energy = 281.2 kcal/mol (280.8 without restraints) Performing minimization step: 2483. Total energy = 281.2 kcal/mol (280.8 without restraints) Performing minimization step: 2484. Total energy = 281.2 kcal/mol (280.7 without restraints) Performing minimization step: 2485. Total energy = 281.1 kcal/mol (280.7 without restraints) Performing minimization step: 2486. Total energy = 281.1 kcal/mol (280.7 without restraints) Performing minimization step: 2487. Total energy = 281.1 kcal/mol (280.6 without restraints) Performing minimization step: 2488. Total energy = 281.1 kcal/mol (280.6 without restraints) Performing minimization step: 2489. Total energy = 281 kcal/mol (280.6 without restraints) Performing minimization step: 2490. Total energy = 281 kcal/mol (280.6 without restraints) Performing minimization step: 2491. Total energy = 281 kcal/mol (280.5 without restraints) Performing minimization step: 2492. Total energy = 280.9 kcal/mol (280.5 without restraints) Performing minimization step: 2493. Total energy = 280.9 kcal/mol (280.5 without restraints) Performing minimization step: 2494. Total energy = 280.9 kcal/mol (280.4 without restraints) Performing minimization step: 2495. Total energy = 280.9 kcal/mol (280.4 without restraints) Performing minimization step: 2496. Total energy = 280.8 kcal/mol (280.4 without restraints) Performing minimization step: 2497. Total energy = 280.8 kcal/mol (280.4 without restraints) Performing minimization step: 2498. Total energy = 280.8 kcal/mol (280.3 without restraints) Performing minimization step: 2499. Total energy = 280.7 kcal/mol (280.3 without restraints) Performing minimization step: 2500. Total energy = 280.7 kcal/mol (280.3 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 280.7 kcal/mol (280.2 without restraints) Performing minimization step: 2502. Total energy = 280.7 kcal/mol (280.2 without restraints) Performing minimization step: 2503. Total energy = 280.6 kcal/mol (280.2 without restraints) Performing minimization step: 2504. Total energy = 280.6 kcal/mol (280.2 without restraints) Performing minimization step: 2505. Total energy = 280.6 kcal/mol (280.1 without restraints) Performing minimization step: 2506. Total energy = 280.5 kcal/mol (280.1 without restraints) Performing minimization step: 2507. Total energy = 280.5 kcal/mol (280.1 without restraints) Performing minimization step: 2508. Total energy = 280.5 kcal/mol (280 without restraints) Performing minimization step: 2509. Total energy = 280.5 kcal/mol (280 without restraints) Performing minimization step: 2510. Total energy = 280.4 kcal/mol (280 without restraints) Performing minimization step: 2511. Total energy = 280.4 kcal/mol (280 without restraints) Performing minimization step: 2512. Total energy = 280.4 kcal/mol (279.9 without restraints) Performing minimization step: 2513. Total energy = 280.3 kcal/mol (279.9 without restraints) Performing minimization step: 2514. Total energy = 280.3 kcal/mol (279.9 without restraints) Performing minimization step: 2515. Total energy = 280.3 kcal/mol (279.8 without restraints) Performing minimization step: 2516. Total energy = 280.3 kcal/mol (279.8 without restraints) Performing minimization step: 2517. Total energy = 280.2 kcal/mol (279.8 without restraints) Performing minimization step: 2518. Total energy = 280.2 kcal/mol (279.8 without restraints) Performing minimization step: 2519. Total energy = 280.2 kcal/mol (279.7 without restraints) Performing minimization step: 2520. Total energy = 280.1 kcal/mol (279.7 without restraints) Performing minimization step: 2521. Total energy = 280.1 kcal/mol (279.7 without restraints) Performing minimization step: 2522. Total energy = 280.1 kcal/mol (279.6 without restraints) Performing minimization step: 2523. Total energy = 280.1 kcal/mol (279.6 without restraints) Performing minimization step: 2524. Total energy = 280 kcal/mol (279.6 without restraints) Performing minimization step: 2525. Total energy = 280 kcal/mol (279.6 without restraints) Performing minimization step: 2526. Total energy = 280 kcal/mol (279.5 without restraints) Performing minimization step: 2527. Total energy = 279.9 kcal/mol (279.5 without restraints) Performing minimization step: 2528. Total energy = 279.9 kcal/mol (279.5 without restraints) Performing minimization step: 2529. Total energy = 279.9 kcal/mol (279.4 without restraints) Performing minimization step: 2530. Total energy = 279.9 kcal/mol (279.4 without restraints) Performing minimization step: 2531. Total energy = 279.8 kcal/mol (279.4 without restraints) Performing minimization step: 2532. Total energy = 279.8 kcal/mol (279.4 without restraints) Performing minimization step: 2533. Total energy = 279.8 kcal/mol (279.3 without restraints) Performing minimization step: 2534. Total energy = 279.7 kcal/mol (279.3 without restraints) Performing minimization step: 2535. Total energy = 279.7 kcal/mol (279.3 without restraints) Performing minimization step: 2536. Total energy = 279.7 kcal/mol (279.2 without restraints) Performing minimization step: 2537. Total energy = 279.7 kcal/mol (279.2 without restraints) Performing minimization step: 2538. Total energy = 279.6 kcal/mol (279.2 without restraints) Performing minimization step: 2539. Total energy = 279.6 kcal/mol (279.2 without restraints) Performing minimization step: 2540. Total energy = 279.6 kcal/mol (279.1 without restraints) Performing minimization step: 2541. Total energy = 279.6 kcal/mol (279.1 without restraints) Performing minimization step: 2542. Total energy = 279.5 kcal/mol (279.1 without restraints) Performing minimization step: 2543. Total energy = 279.5 kcal/mol (279.1 without restraints) Performing minimization step: 2544. Total energy = 279.5 kcal/mol (279 without restraints) Performing minimization step: 2545. Total energy = 279.4 kcal/mol (279 without restraints) Performing minimization step: 2546. Total energy = 279.4 kcal/mol (279 without restraints) Performing minimization step: 2547. Total energy = 279.4 kcal/mol (278.9 without restraints) Performing minimization step: 2548. Total energy = 279.4 kcal/mol (278.9 without restraints) Performing minimization step: 2549. Total energy = 279.3 kcal/mol (278.9 without restraints) Performing minimization step: 2550. Total energy = 279.3 kcal/mol (278.9 without restraints) Performing minimization step: 2551. Total energy = 279.3 kcal/mol (278.8 without restraints) Performing minimization step: 2552. Total energy = 279.2 kcal/mol (278.8 without restraints) Performing minimization step: 2553. Total energy = 279.2 kcal/mol (278.8 without restraints) Performing minimization step: 2554. Total energy = 279.2 kcal/mol (278.7 without restraints) Performing minimization step: 2555. Total energy = 279.2 kcal/mol (278.7 without restraints) Performing minimization step: 2556. Total energy = 279.1 kcal/mol (278.7 without restraints) Performing minimization step: 2557. Total energy = 279.1 kcal/mol (278.7 without restraints) Performing minimization step: 2558. Total energy = 279.1 kcal/mol (278.6 without restraints) Performing minimization step: 2559. Total energy = 279.1 kcal/mol (278.6 without restraints) Performing minimization step: 2560. Total energy = 279 kcal/mol (278.6 without restraints) Performing minimization step: 2561. Total energy = 279 kcal/mol (278.6 without restraints) Performing minimization step: 2562. Total energy = 279 kcal/mol (278.5 without restraints) Performing minimization step: 2563. Total energy = 278.9 kcal/mol (278.5 without restraints) Performing minimization step: 2564. Total energy = 278.9 kcal/mol (278.5 without restraints) Performing minimization step: 2565. Total energy = 278.9 kcal/mol (278.4 without restraints) Performing minimization step: 2566. Total energy = 278.9 kcal/mol (278.4 without restraints) Performing minimization step: 2567. Total energy = 278.8 kcal/mol (278.4 without restraints) Performing minimization step: 2568. Total energy = 278.8 kcal/mol (278.4 without restraints) Performing minimization step: 2569. Total energy = 278.8 kcal/mol (278.3 without restraints) Performing minimization step: 2570. Total energy = 278.8 kcal/mol (278.3 without restraints) Performing minimization step: 2571. Total energy = 278.7 kcal/mol (278.3 without restraints) Performing minimization step: 2572. Total energy = 278.7 kcal/mol (278.3 without restraints) Performing minimization step: 2573. Total energy = 278.7 kcal/mol (278.2 without restraints) Performing minimization step: 2574. Total energy = 278.6 kcal/mol (278.2 without restraints) Performing minimization step: 2575. Total energy = 278.6 kcal/mol (278.2 without restraints) Performing minimization step: 2576. Total energy = 278.6 kcal/mol (278.1 without restraints) Performing minimization step: 2577. Total energy = 278.6 kcal/mol (278.1 without restraints) Performing minimization step: 2578. Total energy = 278.5 kcal/mol (278.1 without restraints) Performing minimization step: 2579. Total energy = 278.5 kcal/mol (278.1 without restraints) Performing minimization step: 2580. Total energy = 278.5 kcal/mol (278 without restraints) Performing minimization step: 2581. Total energy = 278.5 kcal/mol (278 without restraints) Performing minimization step: 2582. Total energy = 278.4 kcal/mol (278 without restraints) Performing minimization step: 2583. Total energy = 278.4 kcal/mol (278 without restraints) Performing minimization step: 2584. Total energy = 278.4 kcal/mol (277.9 without restraints) Performing minimization step: 2585. Total energy = 278.3 kcal/mol (277.9 without restraints) Performing minimization step: 2586. Total energy = 278.3 kcal/mol (277.9 without restraints) Performing minimization step: 2587. Total energy = 278.3 kcal/mol (277.8 without restraints) Performing minimization step: 2588. Total energy = 278.3 kcal/mol (277.8 without restraints) Performing minimization step: 2589. Total energy = 278.2 kcal/mol (277.8 without restraints) Performing minimization step: 2590. Total energy = 278.2 kcal/mol (277.8 without restraints) Performing minimization step: 2591. Total energy = 278.2 kcal/mol (277.7 without restraints) Performing minimization step: 2592. Total energy = 278.2 kcal/mol (277.7 without restraints) Performing minimization step: 2593. Total energy = 278.1 kcal/mol (277.7 without restraints) Performing minimization step: 2594. Total energy = 278.1 kcal/mol (277.7 without restraints) Performing minimization step: 2595. Total energy = 278.1 kcal/mol (277.6 without restraints) Performing minimization step: 2596. Total energy = 278.1 kcal/mol (277.6 without restraints) Performing minimization step: 2597. Total energy = 278 kcal/mol (277.6 without restraints) Performing minimization step: 2598. Total energy = 278 kcal/mol (277.5 without restraints) Performing minimization step: 2599. Total energy = 278 kcal/mol (277.5 without restraints) Performing minimization step: 2600. Total energy = 277.9 kcal/mol (277.5 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 277.9 kcal/mol (277.5 without restraints) Performing minimization step: 2602. Total energy = 277.9 kcal/mol (277.4 without restraints) Performing minimization step: 2603. Total energy = 277.9 kcal/mol (277.4 without restraints) Performing minimization step: 2604. Total energy = 277.8 kcal/mol (277.4 without restraints) Performing minimization step: 2605. Total energy = 277.8 kcal/mol (277.4 without restraints) Performing minimization step: 2606. Total energy = 277.8 kcal/mol (277.3 without restraints) Performing minimization step: 2607. Total energy = 277.8 kcal/mol (277.3 without restraints) Performing minimization step: 2608. Total energy = 277.7 kcal/mol (277.3 without restraints) Performing minimization step: 2609. Total energy = 277.7 kcal/mol (277.3 without restraints) Performing minimization step: 2610. Total energy = 277.7 kcal/mol (277.2 without restraints) Performing minimization step: 2611. Total energy = 277.7 kcal/mol (277.2 without restraints) Performing minimization step: 2612. Total energy = 277.6 kcal/mol (277.2 without restraints) Performing minimization step: 2613. Total energy = 277.6 kcal/mol (277.1 without restraints) Performing minimization step: 2614. Total energy = 277.6 kcal/mol (277.1 without restraints) Performing minimization step: 2615. Total energy = 277.5 kcal/mol (277.1 without restraints) Performing minimization step: 2616. Total energy = 277.5 kcal/mol (277.1 without restraints) Performing minimization step: 2617. Total energy = 277.5 kcal/mol (277 without restraints) Performing minimization step: 2618. Total energy = 277.5 kcal/mol (277 without restraints) Performing minimization step: 2619. Total energy = 277.4 kcal/mol (277 without restraints) Performing minimization step: 2620. Total energy = 277.4 kcal/mol (277 without restraints) Performing minimization step: 2621. Total energy = 277.4 kcal/mol (276.9 without restraints) Performing minimization step: 2622. Total energy = 277.4 kcal/mol (276.9 without restraints) Performing minimization step: 2623. Total energy = 277.3 kcal/mol (276.9 without restraints) Performing minimization step: 2624. Total energy = 277.3 kcal/mol (276.9 without restraints) Performing minimization step: 2625. Total energy = 277.3 kcal/mol (276.8 without restraints) Performing minimization step: 2626. Total energy = 277.3 kcal/mol (276.8 without restraints) Performing minimization step: 2627. Total energy = 277.2 kcal/mol (276.8 without restraints) Performing minimization step: 2628. Total energy = 277.2 kcal/mol (276.8 without restraints) Performing minimization step: 2629. Total energy = 277.2 kcal/mol (276.7 without restraints) Performing minimization step: 2630. Total energy = 277.2 kcal/mol (276.7 without restraints) Performing minimization step: 2631. Total energy = 277.1 kcal/mol (276.7 without restraints) Performing minimization step: 2632. Total energy = 277.1 kcal/mol (276.6 without restraints) Performing minimization step: 2633. Total energy = 277.1 kcal/mol (276.6 without restraints) Performing minimization step: 2634. Total energy = 277 kcal/mol (276.6 without restraints) Performing minimization step: 2635. Total energy = 277 kcal/mol (276.6 without restraints) Performing minimization step: 2636. Total energy = 277 kcal/mol (276.5 without restraints) Performing minimization step: 2637. Total energy = 277 kcal/mol (276.5 without restraints) Performing minimization step: 2638. Total energy = 276.9 kcal/mol (276.5 without restraints) Performing minimization step: 2639. Total energy = 276.9 kcal/mol (276.5 without restraints) Performing minimization step: 2640. Total energy = 276.9 kcal/mol (276.4 without restraints) Performing minimization step: 2641. Total energy = 276.9 kcal/mol (276.4 without restraints) Performing minimization step: 2642. Total energy = 276.8 kcal/mol (276.4 without restraints) Performing minimization step: 2643. Total energy = 276.8 kcal/mol (276.4 without restraints) Performing minimization step: 2644. Total energy = 276.8 kcal/mol (276.3 without restraints) Performing minimization step: 2645. Total energy = 276.8 kcal/mol (276.3 without restraints) Performing minimization step: 2646. Total energy = 276.7 kcal/mol (276.3 without restraints) Performing minimization step: 2647. Total energy = 276.7 kcal/mol (276.3 without restraints) Performing minimization step: 2648. Total energy = 276.7 kcal/mol (276.2 without restraints) Performing minimization step: 2649. Total energy = 276.7 kcal/mol (276.2 without restraints) Performing minimization step: 2650. Total energy = 276.6 kcal/mol (276.2 without restraints) Performing minimization step: 2651. Total energy = 276.6 kcal/mol (276.1 without restraints) Performing minimization step: 2652. Total energy = 276.6 kcal/mol (276.1 without restraints) Performing minimization step: 2653. Total energy = 276.6 kcal/mol (276.1 without restraints) Performing minimization step: 2654. Total energy = 276.5 kcal/mol (276.1 without restraints) Performing minimization step: 2655. Total energy = 276.5 kcal/mol (276 without restraints) Performing minimization step: 2656. Total energy = 276.5 kcal/mol (276 without restraints) Performing minimization step: 2657. Total energy = 276.4 kcal/mol (276 without restraints) Performing minimization step: 2658. Total energy = 276.4 kcal/mol (276 without restraints) Performing minimization step: 2659. Total energy = 276.4 kcal/mol (275.9 without restraints) Performing minimization step: 2660. Total energy = 276.4 kcal/mol (275.9 without restraints) Performing minimization step: 2661. Total energy = 276.3 kcal/mol (275.9 without restraints) Performing minimization step: 2662. Total energy = 276.3 kcal/mol (275.9 without restraints) Performing minimization step: 2663. Total energy = 276.3 kcal/mol (275.8 without restraints) Performing minimization step: 2664. Total energy = 276.3 kcal/mol (275.8 without restraints) Performing minimization step: 2665. Total energy = 276.2 kcal/mol (275.8 without restraints) Performing minimization step: 2666. Total energy = 276.2 kcal/mol (275.8 without restraints) Performing minimization step: 2667. Total energy = 276.2 kcal/mol (275.7 without restraints) Performing minimization step: 2668. Total energy = 276.2 kcal/mol (275.7 without restraints) Performing minimization step: 2669. Total energy = 276.1 kcal/mol (275.7 without restraints) Performing minimization step: 2670. Total energy = 276.1 kcal/mol (275.7 without restraints) Performing minimization step: 2671. Total energy = 276.1 kcal/mol (275.6 without restraints) Performing minimization step: 2672. Total energy = 276.1 kcal/mol (275.6 without restraints) Performing minimization step: 2673. Total energy = 276 kcal/mol (275.6 without restraints) Performing minimization step: 2674. Total energy = 276 kcal/mol (275.6 without restraints) Performing minimization step: 2675. Total energy = 276 kcal/mol (275.5 without restraints) Performing minimization step: 2676. Total energy = 276 kcal/mol (275.5 without restraints) Performing minimization step: 2677. Total energy = 275.9 kcal/mol (275.5 without restraints) Performing minimization step: 2678. Total energy = 275.9 kcal/mol (275.5 without restraints) Performing minimization step: 2679. Total energy = 275.9 kcal/mol (275.4 without restraints) Performing minimization step: 2680. Total energy = 275.9 kcal/mol (275.4 without restraints) Performing minimization step: 2681. Total energy = 275.8 kcal/mol (275.4 without restraints) Performing minimization step: 2682. Total energy = 275.8 kcal/mol (275.4 without restraints) Performing minimization step: 2683. Total energy = 275.8 kcal/mol (275.3 without restraints) Performing minimization step: 2684. Total energy = 275.8 kcal/mol (275.3 without restraints) Performing minimization step: 2685. Total energy = 275.7 kcal/mol (275.3 without restraints) Performing minimization step: 2686. Total energy = 275.7 kcal/mol (275.2 without restraints) Performing minimization step: 2687. Total energy = 275.7 kcal/mol (275.2 without restraints) Performing minimization step: 2688. Total energy = 275.7 kcal/mol (275.2 without restraints) Performing minimization step: 2689. Total energy = 275.6 kcal/mol (275.2 without restraints) Performing minimization step: 2690. Total energy = 275.6 kcal/mol (275.1 without restraints) Performing minimization step: 2691. Total energy = 275.6 kcal/mol (275.1 without restraints) Performing minimization step: 2692. Total energy = 275.6 kcal/mol (275.1 without restraints) Performing minimization step: 2693. Total energy = 275.5 kcal/mol (275.1 without restraints) Performing minimization step: 2694. Total energy = 275.5 kcal/mol (275 without restraints) Performing minimization step: 2695. Total energy = 275.5 kcal/mol (275 without restraints) Performing minimization step: 2696. Total energy = 275.5 kcal/mol (275 without restraints) Performing minimization step: 2697. Total energy = 275.4 kcal/mol (275 without restraints) Performing minimization step: 2698. Total energy = 275.4 kcal/mol (274.9 without restraints) Performing minimization step: 2699. Total energy = 275.4 kcal/mol (274.9 without restraints) Performing minimization step: 2700. Total energy = 275.4 kcal/mol (274.9 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 275.3 kcal/mol (274.9 without restraints) Performing minimization step: 2702. Total energy = 275.3 kcal/mol (274.8 without restraints) Performing minimization step: 2703. Total energy = 275.3 kcal/mol (274.8 without restraints) Performing minimization step: 2704. Total energy = 275.3 kcal/mol (274.8 without restraints) Performing minimization step: 2705. Total energy = 275.2 kcal/mol (274.8 without restraints) Performing minimization step: 2706. Total energy = 275.2 kcal/mol (274.7 without restraints) Performing minimization step: 2707. Total energy = 275.2 kcal/mol (274.7 without restraints) Performing minimization step: 2708. Total energy = 275.2 kcal/mol (274.7 without restraints) Performing minimization step: 2709. Total energy = 275.1 kcal/mol (274.7 without restraints) Performing minimization step: 2710. Total energy = 275.1 kcal/mol (274.6 without restraints) Performing minimization step: 2711. Total energy = 275.1 kcal/mol (274.6 without restraints) Performing minimization step: 2712. Total energy = 275.1 kcal/mol (274.6 without restraints) Performing minimization step: 2713. Total energy = 275 kcal/mol (274.6 without restraints) Performing minimization step: 2714. Total energy = 275 kcal/mol (274.5 without restraints) Performing minimization step: 2715. Total energy = 275 kcal/mol (274.5 without restraints) Performing minimization step: 2716. Total energy = 275 kcal/mol (274.5 without restraints) Performing minimization step: 2717. Total energy = 274.9 kcal/mol (274.5 without restraints) Performing minimization step: 2718. Total energy = 274.9 kcal/mol (274.4 without restraints) Performing minimization step: 2719. Total energy = 274.9 kcal/mol (274.4 without restraints) Performing minimization step: 2720. Total energy = 274.9 kcal/mol (274.4 without restraints) Performing minimization step: 2721. Total energy = 274.8 kcal/mol (274.4 without restraints) Performing minimization step: 2722. Total energy = 274.8 kcal/mol (274.3 without restraints) Performing minimization step: 2723. Total energy = 274.8 kcal/mol (274.3 without restraints) Performing minimization step: 2724. Total energy = 274.8 kcal/mol (274.3 without restraints) Performing minimization step: 2725. Total energy = 274.7 kcal/mol (274.3 without restraints) Performing minimization step: 2726. Total energy = 274.7 kcal/mol (274.2 without restraints) Performing minimization step: 2727. Total energy = 274.7 kcal/mol (274.2 without restraints) Performing minimization step: 2728. Total energy = 274.7 kcal/mol (274.2 without restraints) Performing minimization step: 2729. Total energy = 274.6 kcal/mol (274.2 without restraints) Performing minimization step: 2730. Total energy = 274.6 kcal/mol (274.2 without restraints) Performing minimization step: 2731. Total energy = 274.6 kcal/mol (274.1 without restraints) Performing minimization step: 2732. Total energy = 274.6 kcal/mol (274.1 without restraints) Performing minimization step: 2733. Total energy = 274.5 kcal/mol (274.1 without restraints) Performing minimization step: 2734. Total energy = 274.5 kcal/mol (274.1 without restraints) Performing minimization step: 2735. Total energy = 274.5 kcal/mol (274 without restraints) Performing minimization step: 2736. Total energy = 274.5 kcal/mol (274 without restraints) Performing minimization step: 2737. Total energy = 274.4 kcal/mol (274 without restraints) Performing minimization step: 2738. Total energy = 274.4 kcal/mol (274 without restraints) Performing minimization step: 2739. Total energy = 274.4 kcal/mol (273.9 without restraints) Performing minimization step: 2740. Total energy = 274.4 kcal/mol (273.9 without restraints) Performing minimization step: 2741. Total energy = 274.3 kcal/mol (273.9 without restraints) Performing minimization step: 2742. Total energy = 274.3 kcal/mol (273.9 without restraints) Performing minimization step: 2743. Total energy = 274.3 kcal/mol (273.8 without restraints) Performing minimization step: 2744. Total energy = 274.3 kcal/mol (273.8 without restraints) Performing minimization step: 2745. Total energy = 274.2 kcal/mol (273.8 without restraints) Performing minimization step: 2746. Total energy = 274.2 kcal/mol (273.8 without restraints) Performing minimization step: 2747. Total energy = 274.2 kcal/mol (273.7 without restraints) Performing minimization step: 2748. Total energy = 274.2 kcal/mol (273.7 without restraints) Performing minimization step: 2749. Total energy = 274.2 kcal/mol (273.7 without restraints) Performing minimization step: 2750. Total energy = 274.1 kcal/mol (273.7 without restraints) Performing minimization step: 2751. Total energy = 274.1 kcal/mol (273.6 without restraints) Performing minimization step: 2752. Total energy = 274.1 kcal/mol (273.6 without restraints) Performing minimization step: 2753. Total energy = 274.1 kcal/mol (273.6 without restraints) Performing minimization step: 2754. Total energy = 274 kcal/mol (273.6 without restraints) Performing minimization step: 2755. Total energy = 274 kcal/mol (273.5 without restraints) Performing minimization step: 2756. Total energy = 274 kcal/mol (273.5 without restraints) Performing minimization step: 2757. Total energy = 274 kcal/mol (273.5 without restraints) Performing minimization step: 2758. Total energy = 273.9 kcal/mol (273.5 without restraints) Performing minimization step: 2759. Total energy = 273.9 kcal/mol (273.4 without restraints) Performing minimization step: 2760. Total energy = 273.9 kcal/mol (273.4 without restraints) Performing minimization step: 2761. Total energy = 273.9 kcal/mol (273.4 without restraints) Performing minimization step: 2762. Total energy = 273.8 kcal/mol (273.4 without restraints) Performing minimization step: 2763. Total energy = 273.8 kcal/mol (273.3 without restraints) Performing minimization step: 2764. Total energy = 273.8 kcal/mol (273.3 without restraints) Performing minimization step: 2765. Total energy = 273.8 kcal/mol (273.3 without restraints) Performing minimization step: 2766. Total energy = 273.7 kcal/mol (273.3 without restraints) Performing minimization step: 2767. Total energy = 273.7 kcal/mol (273.3 without restraints) Performing minimization step: 2768. Total energy = 273.7 kcal/mol (273.2 without restraints) Performing minimization step: 2769. Total energy = 273.7 kcal/mol (273.2 without restraints) Performing minimization step: 2770. Total energy = 273.6 kcal/mol (273.2 without restraints) Performing minimization step: 2771. Total energy = 273.6 kcal/mol (273.2 without restraints) Performing minimization step: 2772. Total energy = 273.6 kcal/mol (273.1 without restraints) Performing minimization step: 2773. Total energy = 273.6 kcal/mol (273.1 without restraints) Performing minimization step: 2774. Total energy = 273.6 kcal/mol (273.1 without restraints) Performing minimization step: 2775. Total energy = 273.5 kcal/mol (273.1 without restraints) Performing minimization step: 2776. Total energy = 273.5 kcal/mol (273 without restraints) Performing minimization step: 2777. Total energy = 273.5 kcal/mol (273 without restraints) Performing minimization step: 2778. Total energy = 273.5 kcal/mol (273 without restraints) Performing minimization step: 2779. Total energy = 273.4 kcal/mol (273 without restraints) Performing minimization step: 2780. Total energy = 273.4 kcal/mol (272.9 without restraints) Performing minimization step: 2781. Total energy = 273.4 kcal/mol (272.9 without restraints) Performing minimization step: 2782. Total energy = 273.4 kcal/mol (272.9 without restraints) Performing minimization step: 2783. Total energy = 273.3 kcal/mol (272.9 without restraints) Performing minimization step: 2784. Total energy = 273.3 kcal/mol (272.8 without restraints) Performing minimization step: 2785. Total energy = 273.3 kcal/mol (272.8 without restraints) Performing minimization step: 2786. Total energy = 273.3 kcal/mol (272.8 without restraints) Performing minimization step: 2787. Total energy = 273.2 kcal/mol (272.8 without restraints) Performing minimization step: 2788. Total energy = 273.2 kcal/mol (272.8 without restraints) Performing minimization step: 2789. Total energy = 273.2 kcal/mol (272.7 without restraints) Performing minimization step: 2790. Total energy = 273.2 kcal/mol (272.7 without restraints) Performing minimization step: 2791. Total energy = 273.2 kcal/mol (272.7 without restraints) Performing minimization step: 2792. Total energy = 273.1 kcal/mol (272.7 without restraints) Performing minimization step: 2793. Total energy = 273.1 kcal/mol (272.6 without restraints) Performing minimization step: 2794. Total energy = 273.1 kcal/mol (272.6 without restraints) Performing minimization step: 2795. Total energy = 273.1 kcal/mol (272.6 without restraints) Performing minimization step: 2796. Total energy = 273 kcal/mol (272.6 without restraints) Performing minimization step: 2797. Total energy = 273 kcal/mol (272.5 without restraints) Performing minimization step: 2798. Total energy = 273 kcal/mol (272.5 without restraints) Performing minimization step: 2799. Total energy = 273 kcal/mol (272.5 without restraints) Performing minimization step: 2800. Total energy = 272.9 kcal/mol (272.5 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 272.9 kcal/mol (272.4 without restraints) Performing minimization step: 2802. Total energy = 272.9 kcal/mol (272.4 without restraints) Performing minimization step: 2803. Total energy = 272.9 kcal/mol (272.4 without restraints) Performing minimization step: 2804. Total energy = 272.8 kcal/mol (272.4 without restraints) Performing minimization step: 2805. Total energy = 272.8 kcal/mol (272.4 without restraints) Performing minimization step: 2806. Total energy = 272.8 kcal/mol (272.3 without restraints) Performing minimization step: 2807. Total energy = 272.8 kcal/mol (272.3 without restraints) Performing minimization step: 2808. Total energy = 272.8 kcal/mol (272.3 without restraints) Performing minimization step: 2809. Total energy = 272.7 kcal/mol (272.3 without restraints) Performing minimization step: 2810. Total energy = 272.7 kcal/mol (272.2 without restraints) Performing minimization step: 2811. Total energy = 272.7 kcal/mol (272.2 without restraints) Performing minimization step: 2812. Total energy = 272.7 kcal/mol (272.2 without restraints) Performing minimization step: 2813. Total energy = 272.6 kcal/mol (272.2 without restraints) Performing minimization step: 2814. Total energy = 272.6 kcal/mol (272.1 without restraints) Performing minimization step: 2815. Total energy = 272.6 kcal/mol (272.1 without restraints) Performing minimization step: 2816. Total energy = 272.6 kcal/mol (272.1 without restraints) Performing minimization step: 2817. Total energy = 272.5 kcal/mol (272.1 without restraints) Performing minimization step: 2818. Total energy = 272.5 kcal/mol (272 without restraints) Performing minimization step: 2819. Total energy = 272.5 kcal/mol (272 without restraints) Performing minimization step: 2820. Total energy = 272.5 kcal/mol (272 without restraints) Performing minimization step: 2821. Total energy = 272.5 kcal/mol (272 without restraints) Performing minimization step: 2822. Total energy = 272.4 kcal/mol (272 without restraints) Performing minimization step: 2823. Total energy = 272.4 kcal/mol (271.9 without restraints) Performing minimization step: 2824. Total energy = 272.4 kcal/mol (271.9 without restraints) Performing minimization step: 2825. Total energy = 272.4 kcal/mol (271.9 without restraints) Performing minimization step: 2826. Total energy = 272.3 kcal/mol (271.9 without restraints) Performing minimization step: 2827. Total energy = 272.3 kcal/mol (271.8 without restraints) Performing minimization step: 2828. Total energy = 272.3 kcal/mol (271.8 without restraints) Performing minimization step: 2829. Total energy = 272.3 kcal/mol (271.8 without restraints) Performing minimization step: 2830. Total energy = 272.2 kcal/mol (271.8 without restraints) Performing minimization step: 2831. Total energy = 272.2 kcal/mol (271.7 without restraints) Performing minimization step: 2832. Total energy = 272.2 kcal/mol (271.7 without restraints) Performing minimization step: 2833. Total energy = 272.2 kcal/mol (271.7 without restraints) Performing minimization step: 2834. Total energy = 272.2 kcal/mol (271.7 without restraints) Performing minimization step: 2835. Total energy = 272.1 kcal/mol (271.7 without restraints) Performing minimization step: 2836. Total energy = 272.1 kcal/mol (271.6 without restraints) Performing minimization step: 2837. Total energy = 272.1 kcal/mol (271.6 without restraints) Performing minimization step: 2838. Total energy = 272.1 kcal/mol (271.6 without restraints) Performing minimization step: 2839. Total energy = 272 kcal/mol (271.6 without restraints) Performing minimization step: 2840. Total energy = 272 kcal/mol (271.5 without restraints) Performing minimization step: 2841. Total energy = 272 kcal/mol (271.5 without restraints) Performing minimization step: 2842. Total energy = 272 kcal/mol (271.5 without restraints) Performing minimization step: 2843. Total energy = 271.9 kcal/mol (271.5 without restraints) Performing minimization step: 2844. Total energy = 271.9 kcal/mol (271.5 without restraints) Performing minimization step: 2845. Total energy = 271.9 kcal/mol (271.4 without restraints) Performing minimization step: 2846. Total energy = 271.9 kcal/mol (271.4 without restraints) Performing minimization step: 2847. Total energy = 271.9 kcal/mol (271.4 without restraints) Performing minimization step: 2848. Total energy = 271.8 kcal/mol (271.4 without restraints) Performing minimization step: 2849. Total energy = 271.8 kcal/mol (271.3 without restraints) Performing minimization step: 2850. Total energy = 271.8 kcal/mol (271.3 without restraints) Performing minimization step: 2851. Total energy = 271.8 kcal/mol (271.3 without restraints) Performing minimization step: 2852. Total energy = 271.7 kcal/mol (271.3 without restraints) Performing minimization step: 2853. Total energy = 271.7 kcal/mol (271.2 without restraints) Performing minimization step: 2854. Total energy = 271.7 kcal/mol (271.2 without restraints) Performing minimization step: 2855. Total energy = 271.7 kcal/mol (271.2 without restraints) Performing minimization step: 2856. Total energy = 271.7 kcal/mol (271.2 without restraints) Performing minimization step: 2857. Total energy = 271.6 kcal/mol (271.2 without restraints) Performing minimization step: 2858. Total energy = 271.6 kcal/mol (271.1 without restraints) Performing minimization step: 2859. Total energy = 271.6 kcal/mol (271.1 without restraints) Performing minimization step: 2860. Total energy = 271.6 kcal/mol (271.1 without restraints) Performing minimization step: 2861. Total energy = 271.5 kcal/mol (271.1 without restraints) Performing minimization step: 2862. Total energy = 271.5 kcal/mol (271 without restraints) Performing minimization step: 2863. Total energy = 271.5 kcal/mol (271 without restraints) Performing minimization step: 2864. Total energy = 271.5 kcal/mol (271 without restraints) Performing minimization step: 2865. Total energy = 271.5 kcal/mol (271 without restraints) Performing minimization step: 2866. Total energy = 271.4 kcal/mol (271 without restraints) Performing minimization step: 2867. Total energy = 271.4 kcal/mol (270.9 without restraints) Performing minimization step: 2868. Total energy = 271.4 kcal/mol (270.9 without restraints) Performing minimization step: 2869. Total energy = 271.4 kcal/mol (270.9 without restraints) Performing minimization step: 2870. Total energy = 271.3 kcal/mol (270.9 without restraints) Performing minimization step: 2871. Total energy = 271.3 kcal/mol (270.8 without restraints) Performing minimization step: 2872. Total energy = 271.3 kcal/mol (270.8 without restraints) Performing minimization step: 2873. Total energy = 271.3 kcal/mol (270.8 without restraints) Performing minimization step: 2874. Total energy = 271.3 kcal/mol (270.8 without restraints) Performing minimization step: 2875. Total energy = 271.2 kcal/mol (270.8 without restraints) Performing minimization step: 2876. Total energy = 271.2 kcal/mol (270.7 without restraints) Performing minimization step: 2877. Total energy = 271.2 kcal/mol (270.7 without restraints) Performing minimization step: 2878. Total energy = 271.2 kcal/mol (270.7 without restraints) Performing minimization step: 2879. Total energy = 271.1 kcal/mol (270.7 without restraints) Performing minimization step: 2880. Total energy = 271.1 kcal/mol (270.6 without restraints) Performing minimization step: 2881. Total energy = 271.1 kcal/mol (270.6 without restraints) Performing minimization step: 2882. Total energy = 271.1 kcal/mol (270.6 without restraints) Performing minimization step: 2883. Total energy = 271.1 kcal/mol (270.6 without restraints) Performing minimization step: 2884. Total energy = 271 kcal/mol (270.6 without restraints) Performing minimization step: 2885. Total energy = 271 kcal/mol (270.5 without restraints) Performing minimization step: 2886. Total energy = 271 kcal/mol (270.5 without restraints) Performing minimization step: 2887. Total energy = 271 kcal/mol (270.5 without restraints) Performing minimization step: 2888. Total energy = 270.9 kcal/mol (270.5 without restraints) Performing minimization step: 2889. Total energy = 270.9 kcal/mol (270.4 without restraints) Performing minimization step: 2890. Total energy = 270.9 kcal/mol (270.4 without restraints) Performing minimization step: 2891. Total energy = 270.9 kcal/mol (270.4 without restraints) Performing minimization step: 2892. Total energy = 270.9 kcal/mol (270.4 without restraints) Performing minimization step: 2893. Total energy = 270.8 kcal/mol (270.4 without restraints) Performing minimization step: 2894. Total energy = 270.8 kcal/mol (270.3 without restraints) Performing minimization step: 2895. Total energy = 270.8 kcal/mol (270.3 without restraints) Performing minimization step: 2896. Total energy = 270.8 kcal/mol (270.3 without restraints) Performing minimization step: 2897. Total energy = 270.7 kcal/mol (270.3 without restraints) Performing minimization step: 2898. Total energy = 270.7 kcal/mol (270.2 without restraints) Performing minimization step: 2899. Total energy = 270.7 kcal/mol (270.2 without restraints) Performing minimization step: 2900. Total energy = 270.7 kcal/mol (270.2 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 270.7 kcal/mol (270.2 without restraints) Performing minimization step: 2902. Total energy = 270.6 kcal/mol (270.2 without restraints) Performing minimization step: 2903. Total energy = 270.6 kcal/mol (270.1 without restraints) Performing minimization step: 2904. Total energy = 270.6 kcal/mol (270.1 without restraints) Performing minimization step: 2905. Total energy = 270.6 kcal/mol (270.1 without restraints) Performing minimization step: 2906. Total energy = 270.6 kcal/mol (270.1 without restraints) Performing minimization step: 2907. Total energy = 270.5 kcal/mol (270 without restraints) Performing minimization step: 2908. Total energy = 270.5 kcal/mol (270 without restraints) Performing minimization step: 2909. Total energy = 270.5 kcal/mol (270 without restraints) Performing minimization step: 2910. Total energy = 270.5 kcal/mol (270 without restraints) Performing minimization step: 2911. Total energy = 270.4 kcal/mol (270 without restraints) Performing minimization step: 2912. Total energy = 270.4 kcal/mol (269.9 without restraints) Performing minimization step: 2913. Total energy = 270.4 kcal/mol (269.9 without restraints) Performing minimization step: 2914. Total energy = 270.4 kcal/mol (269.9 without restraints) Performing minimization step: 2915. Total energy = 270.4 kcal/mol (269.9 without restraints) Performing minimization step: 2916. Total energy = 270.3 kcal/mol (269.9 without restraints) Performing minimization step: 2917. Total energy = 270.3 kcal/mol (269.8 without restraints) Performing minimization step: 2918. Total energy = 270.3 kcal/mol (269.8 without restraints) Performing minimization step: 2919. Total energy = 270.3 kcal/mol (269.8 without restraints) Performing minimization step: 2920. Total energy = 270.2 kcal/mol (269.8 without restraints) Performing minimization step: 2921. Total energy = 270.2 kcal/mol (269.7 without restraints) Performing minimization step: 2922. Total energy = 270.2 kcal/mol (269.7 without restraints) Performing minimization step: 2923. Total energy = 270.2 kcal/mol (269.7 without restraints) Performing minimization step: 2924. Total energy = 270.2 kcal/mol (269.7 without restraints) Performing minimization step: 2925. Total energy = 270.1 kcal/mol (269.7 without restraints) Performing minimization step: 2926. Total energy = 270.1 kcal/mol (269.6 without restraints) Performing minimization step: 2927. Total energy = 270.1 kcal/mol (269.6 without restraints) Performing minimization step: 2928. Total energy = 270.1 kcal/mol (269.6 without restraints) Performing minimization step: 2929. Total energy = 270.1 kcal/mol (269.6 without restraints) Performing minimization step: 2930. Total energy = 270 kcal/mol (269.5 without restraints) Performing minimization step: 2931. Total energy = 270 kcal/mol (269.5 without restraints) Performing minimization step: 2932. Total energy = 270 kcal/mol (269.5 without restraints) Performing minimization step: 2933. Total energy = 270 kcal/mol (269.5 without restraints) Performing minimization step: 2934. Total energy = 269.9 kcal/mol (269.5 without restraints) Performing minimization step: 2935. Total energy = 269.9 kcal/mol (269.4 without restraints) Performing minimization step: 2936. Total energy = 269.9 kcal/mol (269.4 without restraints) Performing minimization step: 2937. Total energy = 269.9 kcal/mol (269.4 without restraints) Performing minimization step: 2938. Total energy = 269.9 kcal/mol (269.4 without restraints) Performing minimization step: 2939. Total energy = 269.8 kcal/mol (269.4 without restraints) Performing minimization step: 2940. Total energy = 269.8 kcal/mol (269.3 without restraints) Performing minimization step: 2941. Total energy = 269.8 kcal/mol (269.3 without restraints) Performing minimization step: 2942. Total energy = 269.8 kcal/mol (269.3 without restraints) Performing minimization step: 2943. Total energy = 269.8 kcal/mol (269.3 without restraints) Performing minimization step: 2944. Total energy = 269.7 kcal/mol (269.3 without restraints) Performing minimization step: 2945. Total energy = 269.7 kcal/mol (269.2 without restraints) Performing minimization step: 2946. Total energy = 269.7 kcal/mol (269.2 without restraints) Performing minimization step: 2947. Total energy = 269.7 kcal/mol (269.2 without restraints) Performing minimization step: 2948. Total energy = 269.7 kcal/mol (269.2 without restraints) Performing minimization step: 2949. Total energy = 269.6 kcal/mol (269.1 without restraints) Performing minimization step: 2950. Total energy = 269.6 kcal/mol (269.1 without restraints) Performing minimization step: 2951. Total energy = 269.6 kcal/mol (269.1 without restraints) Performing minimization step: 2952. Total energy = 269.6 kcal/mol (269.1 without restraints) Performing minimization step: 2953. Total energy = 269.5 kcal/mol (269.1 without restraints) Performing minimization step: 2954. Total energy = 269.5 kcal/mol (269 without restraints) Performing minimization step: 2955. Total energy = 269.5 kcal/mol (269 without restraints) Performing minimization step: 2956. Total energy = 269.5 kcal/mol (269 without restraints) Performing minimization step: 2957. Total energy = 269.5 kcal/mol (269 without restraints) Performing minimization step: 2958. Total energy = 269.4 kcal/mol (269 without restraints) Performing minimization step: 2959. Total energy = 269.4 kcal/mol (268.9 without restraints) Performing minimization step: 2960. Total energy = 269.4 kcal/mol (268.9 without restraints) Performing minimization step: 2961. Total energy = 269.4 kcal/mol (268.9 without restraints) Performing minimization step: 2962. Total energy = 269.4 kcal/mol (268.9 without restraints) Performing minimization step: 2963. Total energy = 269.3 kcal/mol (268.8 without restraints) Performing minimization step: 2964. Total energy = 269.3 kcal/mol (268.8 without restraints) Performing minimization step: 2965. Total energy = 269.3 kcal/mol (268.8 without restraints) Performing minimization step: 2966. Total energy = 269.3 kcal/mol (268.8 without restraints) Performing minimization step: 2967. Total energy = 269.3 kcal/mol (268.8 without restraints) Performing minimization step: 2968. Total energy = 269.2 kcal/mol (268.7 without restraints) Performing minimization step: 2969. Total energy = 269.2 kcal/mol (268.7 without restraints) Performing minimization step: 2970. Total energy = 269.2 kcal/mol (268.7 without restraints) Performing minimization step: 2971. Total energy = 269.2 kcal/mol (268.7 without restraints) Performing minimization step: 2972. Total energy = 269.1 kcal/mol (268.7 without restraints) Performing minimization step: 2973. Total energy = 269.1 kcal/mol (268.6 without restraints) Performing minimization step: 2974. Total energy = 269.1 kcal/mol (268.6 without restraints) Performing minimization step: 2975. Total energy = 269.1 kcal/mol (268.6 without restraints) Performing minimization step: 2976. Total energy = 269.1 kcal/mol (268.6 without restraints) Performing minimization step: 2977. Total energy = 269 kcal/mol (268.6 without restraints) Performing minimization step: 2978. Total energy = 269 kcal/mol (268.5 without restraints) Performing minimization step: 2979. Total energy = 269 kcal/mol (268.5 without restraints) Performing minimization step: 2980. Total energy = 269 kcal/mol (268.5 without restraints) Performing minimization step: 2981. Total energy = 269 kcal/mol (268.5 without restraints) Performing minimization step: 2982. Total energy = 268.9 kcal/mol (268.5 without restraints) Performing minimization step: 2983. Total energy = 268.9 kcal/mol (268.4 without restraints) Performing minimization step: 2984. Total energy = 268.9 kcal/mol (268.4 without restraints) Performing minimization step: 2985. Total energy = 268.9 kcal/mol (268.4 without restraints) Performing minimization step: 2986. Total energy = 268.9 kcal/mol (268.4 without restraints) Performing minimization step: 2987. Total energy = 268.8 kcal/mol (268.3 without restraints) Performing minimization step: 2988. Total energy = 268.8 kcal/mol (268.3 without restraints) Performing minimization step: 2989. Total energy = 268.8 kcal/mol (268.3 without restraints) Performing minimization step: 2990. Total energy = 268.8 kcal/mol (268.3 without restraints) Performing minimization step: 2991. Total energy = 268.8 kcal/mol (268.3 without restraints) Performing minimization step: 2992. Total energy = 268.7 kcal/mol (268.2 without restraints) Performing minimization step: 2993. Total energy = 268.7 kcal/mol (268.2 without restraints) Performing minimization step: 2994. Total energy = 268.7 kcal/mol (268.2 without restraints) Performing minimization step: 2995. Total energy = 268.7 kcal/mol (268.2 without restraints) Performing minimization step: 2996. Total energy = 268.7 kcal/mol (268.2 without restraints) Performing minimization step: 2997. Total energy = 268.6 kcal/mol (268.1 without restraints) Performing minimization step: 2998. Total energy = 268.6 kcal/mol (268.1 without restraints) Performing minimization step: 2999. Total energy = 268.6 kcal/mol (268.1 without restraints) Performing minimization step: 3000. Total energy = 268.6 kcal/mol (268.1 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 268.6 kcal/mol (268.1 without restraints) Performing minimization step: 3002. Total energy = 268.5 kcal/mol (268 without restraints) Performing minimization step: 3003. Total energy = 268.5 kcal/mol (268 without restraints) Performing minimization step: 3004. Total energy = 268.5 kcal/mol (268 without restraints) Performing minimization step: 3005. Total energy = 268.5 kcal/mol (268 without restraints) Performing minimization step: 3006. Total energy = 268.4 kcal/mol (268 without restraints) Performing minimization step: 3007. Total energy = 268.4 kcal/mol (267.9 without restraints) Performing minimization step: 3008. Total energy = 268.4 kcal/mol (267.9 without restraints) Performing minimization step: 3009. Total energy = 268.4 kcal/mol (267.9 without restraints) Performing minimization step: 3010. Total energy = 268.4 kcal/mol (267.9 without restraints) Performing minimization step: 3011. Total energy = 268.3 kcal/mol (267.9 without restraints) Performing minimization step: 3012. Total energy = 268.3 kcal/mol (267.8 without restraints) Performing minimization step: 3013. Total energy = 268.3 kcal/mol (267.8 without restraints) Performing minimization step: 3014. Total energy = 268.3 kcal/mol (267.8 without restraints) Performing minimization step: 3015. Total energy = 268.3 kcal/mol (267.8 without restraints) Performing minimization step: 3016. Total energy = 268.2 kcal/mol (267.8 without restraints) Performing minimization step: 3017. Total energy = 268.2 kcal/mol (267.7 without restraints) Performing minimization step: 3018. Total energy = 268.2 kcal/mol (267.7 without restraints) Performing minimization step: 3019. Total energy = 268.2 kcal/mol (267.7 without restraints) Performing minimization step: 3020. Total energy = 268.2 kcal/mol (267.7 without restraints) Performing minimization step: 3021. Total energy = 268.1 kcal/mol (267.7 without restraints) Performing minimization step: 3022. Total energy = 268.1 kcal/mol (267.6 without restraints) Performing minimization step: 3023. Total energy = 268.1 kcal/mol (267.6 without restraints) Performing minimization step: 3024. Total energy = 268.1 kcal/mol (267.6 without restraints) Performing minimization step: 3025. Total energy = 268.1 kcal/mol (267.6 without restraints) Performing minimization step: 3026. Total energy = 268 kcal/mol (267.6 without restraints) Performing minimization step: 3027. Total energy = 268 kcal/mol (267.5 without restraints) Performing minimization step: 3028. Total energy = 268 kcal/mol (267.5 without restraints) Performing minimization step: 3029. Total energy = 268 kcal/mol (267.5 without restraints) Performing minimization step: 3030. Total energy = 268 kcal/mol (267.5 without restraints) Performing minimization step: 3031. Total energy = 267.9 kcal/mol (267.5 without restraints) Performing minimization step: 3032. Total energy = 267.9 kcal/mol (267.4 without restraints) Performing minimization step: 3033. Total energy = 267.9 kcal/mol (267.4 without restraints) Performing minimization step: 3034. Total energy = 267.9 kcal/mol (267.4 without restraints) Performing minimization step: 3035. Total energy = 267.9 kcal/mol (267.4 without restraints) Performing minimization step: 3036. Total energy = 267.8 kcal/mol (267.4 without restraints) Performing minimization step: 3037. Total energy = 267.8 kcal/mol (267.3 without restraints) Performing minimization step: 3038. Total energy = 267.8 kcal/mol (267.3 without restraints) Performing minimization step: 3039. Total energy = 267.8 kcal/mol (267.3 without restraints) Performing minimization step: 3040. Total energy = 267.8 kcal/mol (267.3 without restraints) Performing minimization step: 3041. Total energy = 267.7 kcal/mol (267.3 without restraints) Performing minimization step: 3042. Total energy = 267.7 kcal/mol (267.2 without restraints) Performing minimization step: 3043. Total energy = 267.7 kcal/mol (267.2 without restraints) Performing minimization step: 3044. Total energy = 267.7 kcal/mol (267.2 without restraints) Performing minimization step: 3045. Total energy = 267.7 kcal/mol (267.2 without restraints) Performing minimization step: 3046. Total energy = 267.6 kcal/mol (267.2 without restraints) Performing minimization step: 3047. Total energy = 267.6 kcal/mol (267.1 without restraints) Performing minimization step: 3048. Total energy = 267.6 kcal/mol (267.1 without restraints) Performing minimization step: 3049. Total energy = 267.6 kcal/mol (267.1 without restraints) Performing minimization step: 3050. Total energy = 267.6 kcal/mol (267.1 without restraints) Performing minimization step: 3051. Total energy = 267.5 kcal/mol (267.1 without restraints) Performing minimization step: 3052. Total energy = 267.5 kcal/mol (267 without restraints) Performing minimization step: 3053. Total energy = 267.5 kcal/mol (267 without restraints) Performing minimization step: 3054. Total energy = 267.5 kcal/mol (267 without restraints) Performing minimization step: 3055. Total energy = 267.5 kcal/mol (267 without restraints) Performing minimization step: 3056. Total energy = 267.5 kcal/mol (267 without restraints) Performing minimization step: 3057. Total energy = 267.4 kcal/mol (266.9 without restraints) Performing minimization step: 3058. Total energy = 267.4 kcal/mol (266.9 without restraints) Performing minimization step: 3059. Total energy = 267.4 kcal/mol (266.9 without restraints) Performing minimization step: 3060. Total energy = 267.4 kcal/mol (266.9 without restraints) Performing minimization step: 3061. Total energy = 267.4 kcal/mol (266.9 without restraints) Performing minimization step: 3062. Total energy = 267.3 kcal/mol (266.8 without restraints) Performing minimization step: 3063. Total energy = 267.3 kcal/mol (266.8 without restraints) Performing minimization step: 3064. Total energy = 267.3 kcal/mol (266.8 without restraints) Performing minimization step: 3065. Total energy = 267.3 kcal/mol (266.8 without restraints) Performing minimization step: 3066. Total energy = 267.3 kcal/mol (266.8 without restraints) Performing minimization step: 3067. Total energy = 267.2 kcal/mol (266.7 without restraints) Performing minimization step: 3068. Total energy = 267.2 kcal/mol (266.7 without restraints) Performing minimization step: 3069. Total energy = 267.2 kcal/mol (266.7 without restraints) Performing minimization step: 3070. Total energy = 267.2 kcal/mol (266.7 without restraints) Performing minimization step: 3071. Total energy = 267.2 kcal/mol (266.7 without restraints) Performing minimization step: 3072. Total energy = 267.1 kcal/mol (266.6 without restraints) Performing minimization step: 3073. Total energy = 267.1 kcal/mol (266.6 without restraints) Performing minimization step: 3074. Total energy = 267.1 kcal/mol (266.6 without restraints) Performing minimization step: 3075. Total energy = 267.1 kcal/mol (266.6 without restraints) Performing minimization step: 3076. Total energy = 267.1 kcal/mol (266.6 without restraints) Performing minimization step: 3077. Total energy = 267 kcal/mol (266.5 without restraints) Performing minimization step: 3078. Total energy = 267 kcal/mol (266.5 without restraints) Performing minimization step: 3079. Total energy = 267 kcal/mol (266.5 without restraints) Performing minimization step: 3080. Total energy = 267 kcal/mol (266.5 without restraints) Performing minimization step: 3081. Total energy = 267 kcal/mol (266.5 without restraints) Performing minimization step: 3082. Total energy = 266.9 kcal/mol (266.4 without restraints) Performing minimization step: 3083. Total energy = 266.9 kcal/mol (266.4 without restraints) Performing minimization step: 3084. Total energy = 266.9 kcal/mol (266.4 without restraints) Performing minimization step: 3085. Total energy = 266.9 kcal/mol (266.4 without restraints) Performing minimization step: 3086. Total energy = 266.9 kcal/mol (266.4 without restraints) Performing minimization step: 3087. Total energy = 266.8 kcal/mol (266.4 without restraints) Performing minimization step: 3088. Total energy = 266.8 kcal/mol (266.3 without restraints) Performing minimization step: 3089. Total energy = 266.8 kcal/mol (266.3 without restraints) Performing minimization step: 3090. Total energy = 266.8 kcal/mol (266.3 without restraints) Performing minimization step: 3091. Total energy = 266.8 kcal/mol (266.3 without restraints) Performing minimization step: 3092. Total energy = 266.8 kcal/mol (266.3 without restraints) Performing minimization step: 3093. Total energy = 266.7 kcal/mol (266.2 without restraints) Performing minimization step: 3094. Total energy = 266.7 kcal/mol (266.2 without restraints) Performing minimization step: 3095. Total energy = 266.7 kcal/mol (266.2 without restraints) Performing minimization step: 3096. Total energy = 266.7 kcal/mol (266.2 without restraints) Performing minimization step: 3097. Total energy = 266.7 kcal/mol (266.2 without restraints) Performing minimization step: 3098. Total energy = 266.6 kcal/mol (266.1 without restraints) Performing minimization step: 3099. Total energy = 266.6 kcal/mol (266.1 without restraints) Performing minimization step: 3100. Total energy = 266.6 kcal/mol (266.1 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 266.6 kcal/mol (266.1 without restraints) Performing minimization step: 3102. Total energy = 266.6 kcal/mol (266.1 without restraints) Performing minimization step: 3103. Total energy = 266.5 kcal/mol (266 without restraints) Performing minimization step: 3104. Total energy = 266.5 kcal/mol (266 without restraints) Performing minimization step: 3105. Total energy = 266.5 kcal/mol (266 without restraints) Performing minimization step: 3106. Total energy = 266.5 kcal/mol (266 without restraints) Performing minimization step: 3107. Total energy = 266.5 kcal/mol (266 without restraints) Performing minimization step: 3108. Total energy = 266.4 kcal/mol (265.9 without restraints) Performing minimization step: 3109. Total energy = 266.4 kcal/mol (265.9 without restraints) Performing minimization step: 3110. Total energy = 266.4 kcal/mol (265.9 without restraints) Performing minimization step: 3111. Total energy = 266.4 kcal/mol (265.9 without restraints) Performing minimization step: 3112. Total energy = 266.4 kcal/mol (265.9 without restraints) Performing minimization step: 3113. Total energy = 266.4 kcal/mol (265.9 without restraints) Performing minimization step: 3114. Total energy = 266.3 kcal/mol (265.8 without restraints) Performing minimization step: 3115. Total energy = 266.3 kcal/mol (265.8 without restraints) Performing minimization step: 3116. Total energy = 266.3 kcal/mol (265.8 without restraints) Performing minimization step: 3117. Total energy = 266.3 kcal/mol (265.8 without restraints) Performing minimization step: 3118. Total energy = 266.3 kcal/mol (265.8 without restraints) Performing minimization step: 3119. Total energy = 266.2 kcal/mol (265.7 without restraints) Performing minimization step: 3120. Total energy = 266.2 kcal/mol (265.7 without restraints) Performing minimization step: 3121. Total energy = 266.2 kcal/mol (265.7 without restraints) Performing minimization step: 3122. Total energy = 266.2 kcal/mol (265.7 without restraints) Performing minimization step: 3123. Total energy = 266.2 kcal/mol (265.7 without restraints) Performing minimization step: 3124. Total energy = 266.1 kcal/mol (265.6 without restraints) Performing minimization step: 3125. Total energy = 266.1 kcal/mol (265.6 without restraints) Performing minimization step: 3126. Total energy = 266.1 kcal/mol (265.6 without restraints) Performing minimization step: 3127. Total energy = 266.1 kcal/mol (265.6 without restraints) Performing minimization step: 3128. Total energy = 266.1 kcal/mol (265.6 without restraints) Performing minimization step: 3129. Total energy = 266.1 kcal/mol (265.5 without restraints) Performing minimization step: 3130. Total energy = 266 kcal/mol (265.5 without restraints) Performing minimization step: 3131. Total energy = 266 kcal/mol (265.5 without restraints) Performing minimization step: 3132. Total energy = 266 kcal/mol (265.5 without restraints) Performing minimization step: 3133. Total energy = 266 kcal/mol (265.5 without restraints) Performing minimization step: 3134. Total energy = 266 kcal/mol (265.5 without restraints) Performing minimization step: 3135. Total energy = 265.9 kcal/mol (265.4 without restraints) Performing minimization step: 3136. Total energy = 265.9 kcal/mol (265.4 without restraints) Performing minimization step: 3137. Total energy = 265.9 kcal/mol (265.4 without restraints) Performing minimization step: 3138. Total energy = 265.9 kcal/mol (265.4 without restraints) Performing minimization step: 3139. Total energy = 265.9 kcal/mol (265.4 without restraints) Performing minimization step: 3140. Total energy = 265.8 kcal/mol (265.3 without restraints) Performing minimization step: 3141. Total energy = 265.8 kcal/mol (265.3 without restraints) Performing minimization step: 3142. Total energy = 265.8 kcal/mol (265.3 without restraints) Performing minimization step: 3143. Total energy = 265.8 kcal/mol (265.3 without restraints) Performing minimization step: 3144. Total energy = 265.8 kcal/mol (265.3 without restraints) Performing minimization step: 3145. Total energy = 265.8 kcal/mol (265.2 without restraints) Performing minimization step: 3146. Total energy = 265.7 kcal/mol (265.2 without restraints) Performing minimization step: 3147. Total energy = 265.7 kcal/mol (265.2 without restraints) Performing minimization step: 3148. Total energy = 265.7 kcal/mol (265.2 without restraints) Performing minimization step: 3149. Total energy = 265.7 kcal/mol (265.2 without restraints) Performing minimization step: 3150. Total energy = 265.7 kcal/mol (265.2 without restraints) Performing minimization step: 3151. Total energy = 265.6 kcal/mol (265.1 without restraints) Performing minimization step: 3152. Total energy = 265.6 kcal/mol (265.1 without restraints) Performing minimization step: 3153. Total energy = 265.6 kcal/mol (265.1 without restraints) Performing minimization step: 3154. Total energy = 265.6 kcal/mol (265.1 without restraints) Performing minimization step: 3155. Total energy = 265.6 kcal/mol (265.1 without restraints) Performing minimization step: 3156. Total energy = 265.5 kcal/mol (265 without restraints) Performing minimization step: 3157. Total energy = 265.5 kcal/mol (265 without restraints) Performing minimization step: 3158. Total energy = 265.5 kcal/mol (265 without restraints) Performing minimization step: 3159. Total energy = 265.5 kcal/mol (265 without restraints) Performing minimization step: 3160. Total energy = 265.5 kcal/mol (265 without restraints) Performing minimization step: 3161. Total energy = 265.5 kcal/mol (265 without restraints) Performing minimization step: 3162. Total energy = 265.4 kcal/mol (264.9 without restraints) Performing minimization step: 3163. Total energy = 265.4 kcal/mol (264.9 without restraints) Performing minimization step: 3164. Total energy = 265.4 kcal/mol (264.9 without restraints) Performing minimization step: 3165. Total energy = 265.4 kcal/mol (264.9 without restraints) Performing minimization step: 3166. Total energy = 265.4 kcal/mol (264.9 without restraints) Performing minimization step: 3167. Total energy = 265.3 kcal/mol (264.8 without restraints) Performing minimization step: 3168. Total energy = 265.3 kcal/mol (264.8 without restraints) Performing minimization step: 3169. Total energy = 265.3 kcal/mol (264.8 without restraints) Performing minimization step: 3170. Total energy = 265.3 kcal/mol (264.8 without restraints) Performing minimization step: 3171. Total energy = 265.3 kcal/mol (264.8 without restraints) Performing minimization step: 3172. Total energy = 265.3 kcal/mol (264.7 without restraints) Performing minimization step: 3173. Total energy = 265.2 kcal/mol (264.7 without restraints) Performing minimization step: 3174. Total energy = 265.2 kcal/mol (264.7 without restraints) Performing minimization step: 3175. Total energy = 265.2 kcal/mol (264.7 without restraints) Performing minimization step: 3176. Total energy = 265.2 kcal/mol (264.7 without restraints) Performing minimization step: 3177. Total energy = 265.2 kcal/mol (264.7 without restraints) Performing minimization step: 3178. Total energy = 265.1 kcal/mol (264.6 without restraints) Performing minimization step: 3179. Total energy = 265.1 kcal/mol (264.6 without restraints) Performing minimization step: 3180. Total energy = 265.1 kcal/mol (264.6 without restraints) Performing minimization step: 3181. Total energy = 265.1 kcal/mol (264.6 without restraints) Performing minimization step: 3182. Total energy = 265.1 kcal/mol (264.6 without restraints) Performing minimization step: 3183. Total energy = 265.1 kcal/mol (264.5 without restraints) Performing minimization step: 3184. Total energy = 265 kcal/mol (264.5 without restraints) Performing minimization step: 3185. Total energy = 265 kcal/mol (264.5 without restraints) Performing minimization step: 3186. Total energy = 265 kcal/mol (264.5 without restraints) Performing minimization step: 3187. Total energy = 265 kcal/mol (264.5 without restraints) Performing minimization step: 3188. Total energy = 265 kcal/mol (264.5 without restraints) Performing minimization step: 3189. Total energy = 264.9 kcal/mol (264.4 without restraints) Performing minimization step: 3190. Total energy = 264.9 kcal/mol (264.4 without restraints) Performing minimization step: 3191. Total energy = 264.9 kcal/mol (264.4 without restraints) Performing minimization step: 3192. Total energy = 264.9 kcal/mol (264.4 without restraints) Performing minimization step: 3193. Total energy = 264.9 kcal/mol (264.4 without restraints) Performing minimization step: 3194. Total energy = 264.9 kcal/mol (264.3 without restraints) Performing minimization step: 3195. Total energy = 264.8 kcal/mol (264.3 without restraints) Performing minimization step: 3196. Total energy = 264.8 kcal/mol (264.3 without restraints) Performing minimization step: 3197. Total energy = 264.8 kcal/mol (264.3 without restraints) Performing minimization step: 3198. Total energy = 264.8 kcal/mol (264.3 without restraints) Performing minimization step: 3199. Total energy = 264.8 kcal/mol (264.3 without restraints) Performing minimization step: 3200. Total energy = 264.7 kcal/mol (264.2 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 264.7 kcal/mol (264.2 without restraints) Performing minimization step: 3202. Total energy = 264.7 kcal/mol (264.2 without restraints) Performing minimization step: 3203. Total energy = 264.7 kcal/mol (264.2 without restraints) Performing minimization step: 3204. Total energy = 264.7 kcal/mol (264.2 without restraints) Performing minimization step: 3205. Total energy = 264.7 kcal/mol (264.2 without restraints) Performing minimization step: 3206. Total energy = 264.6 kcal/mol (264.1 without restraints) Performing minimization step: 3207. Total energy = 264.6 kcal/mol (264.1 without restraints) Performing minimization step: 3208. Total energy = 264.6 kcal/mol (264.1 without restraints) Performing minimization step: 3209. Total energy = 264.6 kcal/mol (264.1 without restraints) Performing minimization step: 3210. Total energy = 264.6 kcal/mol (264.1 without restraints) Performing minimization step: 3211. Total energy = 264.6 kcal/mol (264 without restraints) Performing minimization step: 3212. Total energy = 264.5 kcal/mol (264 without restraints) Performing minimization step: 3213. Total energy = 264.5 kcal/mol (264 without restraints) Performing minimization step: 3214. Total energy = 264.5 kcal/mol (264 without restraints) Performing minimization step: 3215. Total energy = 264.5 kcal/mol (264 without restraints) Performing minimization step: 3216. Total energy = 264.5 kcal/mol (264 without restraints) Performing minimization step: 3217. Total energy = 264.4 kcal/mol (263.9 without restraints) Performing minimization step: 3218. Total energy = 264.4 kcal/mol (263.9 without restraints) Performing minimization step: 3219. Total energy = 264.4 kcal/mol (263.9 without restraints) Performing minimization step: 3220. Total energy = 264.4 kcal/mol (263.9 without restraints) Performing minimization step: 3221. Total energy = 264.4 kcal/mol (263.9 without restraints) Performing minimization step: 3222. Total energy = 264.4 kcal/mol (263.8 without restraints) Performing minimization step: 3223. Total energy = 264.3 kcal/mol (263.8 without restraints) Performing minimization step: 3224. Total energy = 264.3 kcal/mol (263.8 without restraints) Performing minimization step: 3225. Total energy = 264.3 kcal/mol (263.8 without restraints) Performing minimization step: 3226. Total energy = 264.3 kcal/mol (263.8 without restraints) Performing minimization step: 3227. Total energy = 264.3 kcal/mol (263.8 without restraints) Performing minimization step: 3228. Total energy = 264.3 kcal/mol (263.7 without restraints) Performing minimization step: 3229. Total energy = 264.2 kcal/mol (263.7 without restraints) Performing minimization step: 3230. Total energy = 264.2 kcal/mol (263.7 without restraints) Performing minimization step: 3231. Total energy = 264.2 kcal/mol (263.7 without restraints) Performing minimization step: 3232. Total energy = 264.2 kcal/mol (263.7 without restraints) Performing minimization step: 3233. Total energy = 264.2 kcal/mol (263.7 without restraints) Performing minimization step: 3234. Total energy = 264.1 kcal/mol (263.6 without restraints) Performing minimization step: 3235. Total energy = 264.1 kcal/mol (263.6 without restraints) Performing minimization step: 3236. Total energy = 264.1 kcal/mol (263.6 without restraints) Performing minimization step: 3237. Total energy = 264.1 kcal/mol (263.6 without restraints) Performing minimization step: 3238. Total energy = 264.1 kcal/mol (263.6 without restraints) Performing minimization step: 3239. Total energy = 264.1 kcal/mol (263.5 without restraints) Performing minimization step: 3240. Total energy = 264 kcal/mol (263.5 without restraints) Performing minimization step: 3241. Total energy = 264 kcal/mol (263.5 without restraints) Performing minimization step: 3242. Total energy = 264 kcal/mol (263.5 without restraints) Performing minimization step: 3243. Total energy = 264 kcal/mol (263.5 without restraints) Performing minimization step: 3244. Total energy = 264 kcal/mol (263.5 without restraints) Performing minimization step: 3245. Total energy = 264 kcal/mol (263.4 without restraints) Performing minimization step: 3246. Total energy = 263.9 kcal/mol (263.4 without restraints) Performing minimization step: 3247. Total energy = 263.9 kcal/mol (263.4 without restraints) Performing minimization step: 3248. Total energy = 263.9 kcal/mol (263.4 without restraints) Performing minimization step: 3249. Total energy = 263.9 kcal/mol (263.4 without restraints) Performing minimization step: 3250. Total energy = 263.9 kcal/mol (263.4 without restraints) Performing minimization step: 3251. Total energy = 263.8 kcal/mol (263.3 without restraints) Performing minimization step: 3252. Total energy = 263.8 kcal/mol (263.3 without restraints) Performing minimization step: 3253. Total energy = 263.8 kcal/mol (263.3 without restraints) Performing minimization step: 3254. Total energy = 263.8 kcal/mol (263.3 without restraints) Performing minimization step: 3255. Total energy = 263.8 kcal/mol (263.3 without restraints) Performing minimization step: 3256. Total energy = 263.8 kcal/mol (263.2 without restraints) Performing minimization step: 3257. Total energy = 263.7 kcal/mol (263.2 without restraints) Performing minimization step: 3258. Total energy = 263.7 kcal/mol (263.2 without restraints) Performing minimization step: 3259. Total energy = 263.7 kcal/mol (263.2 without restraints) Performing minimization step: 3260. Total energy = 263.7 kcal/mol (263.2 without restraints) Performing minimization step: 3261. Total energy = 263.7 kcal/mol (263.2 without restraints) Performing minimization step: 3262. Total energy = 263.7 kcal/mol (263.1 without restraints) Performing minimization step: 3263. Total energy = 263.6 kcal/mol (263.1 without restraints) Performing minimization step: 3264. Total energy = 263.6 kcal/mol (263.1 without restraints) Performing minimization step: 3265. Total energy = 263.6 kcal/mol (263.1 without restraints) Performing minimization step: 3266. Total energy = 263.6 kcal/mol (263.1 without restraints) Performing minimization step: 3267. Total energy = 263.6 kcal/mol (263.1 without restraints) Performing minimization step: 3268. Total energy = 263.6 kcal/mol (263 without restraints) Performing minimization step: 3269. Total energy = 263.5 kcal/mol (263 without restraints) Performing minimization step: 3270. Total energy = 263.5 kcal/mol (263 without restraints) Performing minimization step: 3271. Total energy = 263.5 kcal/mol (263 without restraints) Performing minimization step: 3272. Total energy = 263.5 kcal/mol (263 without restraints) Performing minimization step: 3273. Total energy = 263.5 kcal/mol (263 without restraints) Performing minimization step: 3274. Total energy = 263.5 kcal/mol (262.9 without restraints) Performing minimization step: 3275. Total energy = 263.4 kcal/mol (262.9 without restraints) Performing minimization step: 3276. Total energy = 263.4 kcal/mol (262.9 without restraints) Performing minimization step: 3277. Total energy = 263.4 kcal/mol (262.9 without restraints) Performing minimization step: 3278. Total energy = 263.4 kcal/mol (262.9 without restraints) Performing minimization step: 3279. Total energy = 263.4 kcal/mol (262.8 without restraints) Performing minimization step: 3280. Total energy = 263.3 kcal/mol (262.8 without restraints) Performing minimization step: 3281. Total energy = 263.3 kcal/mol (262.8 without restraints) Performing minimization step: 3282. Total energy = 263.3 kcal/mol (262.8 without restraints) Performing minimization step: 3283. Total energy = 263.3 kcal/mol (262.8 without restraints) Performing minimization step: 3284. Total energy = 263.3 kcal/mol (262.8 without restraints) Performing minimization step: 3285. Total energy = 263.3 kcal/mol (262.7 without restraints) Performing minimization step: 3286. Total energy = 263.2 kcal/mol (262.7 without restraints) Performing minimization step: 3287. Total energy = 263.2 kcal/mol (262.7 without restraints) Performing minimization step: 3288. Total energy = 263.2 kcal/mol (262.7 without restraints) Performing minimization step: 3289. Total energy = 263.2 kcal/mol (262.7 without restraints) Performing minimization step: 3290. Total energy = 263.2 kcal/mol (262.7 without restraints) Performing minimization step: 3291. Total energy = 263.2 kcal/mol (262.6 without restraints) Performing minimization step: 3292. Total energy = 263.1 kcal/mol (262.6 without restraints) Performing minimization step: 3293. Total energy = 263.1 kcal/mol (262.6 without restraints) Performing minimization step: 3294. Total energy = 263.1 kcal/mol (262.6 without restraints) Performing minimization step: 3295. Total energy = 263.1 kcal/mol (262.6 without restraints) Performing minimization step: 3296. Total energy = 263.1 kcal/mol (262.6 without restraints) Performing minimization step: 3297. Total energy = 263.1 kcal/mol (262.5 without restraints) Performing minimization step: 3298. Total energy = 263 kcal/mol (262.5 without restraints) Performing minimization step: 3299. Total energy = 263 kcal/mol (262.5 without restraints) Performing minimization step: 3300. Total energy = 263 kcal/mol (262.5 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 263 kcal/mol (262.5 without restraints) Performing minimization step: 3302. Total energy = 263 kcal/mol (262.5 without restraints) Performing minimization step: 3303. Total energy = 263 kcal/mol (262.4 without restraints) Performing minimization step: 3304. Total energy = 262.9 kcal/mol (262.4 without restraints) Performing minimization step: 3305. Total energy = 262.9 kcal/mol (262.4 without restraints) Performing minimization step: 3306. Total energy = 262.9 kcal/mol (262.4 without restraints) Performing minimization step: 3307. Total energy = 262.9 kcal/mol (262.4 without restraints) Performing minimization step: 3308. Total energy = 262.9 kcal/mol (262.4 without restraints) Performing minimization step: 3309. Total energy = 262.9 kcal/mol (262.3 without restraints) Performing minimization step: 3310. Total energy = 262.8 kcal/mol (262.3 without restraints) Performing minimization step: 3311. Total energy = 262.8 kcal/mol (262.3 without restraints) Performing minimization step: 3312. Total energy = 262.8 kcal/mol (262.3 without restraints) Performing minimization step: 3313. Total energy = 262.8 kcal/mol (262.3 without restraints) Performing minimization step: 3314. Total energy = 262.8 kcal/mol (262.3 without restraints) Performing minimization step: 3315. Total energy = 262.8 kcal/mol (262.2 without restraints) Performing minimization step: 3316. Total energy = 262.7 kcal/mol (262.2 without restraints) Performing minimization step: 3317. Total energy = 262.7 kcal/mol (262.2 without restraints) Performing minimization step: 3318. Total energy = 262.7 kcal/mol (262.2 without restraints) Performing minimization step: 3319. Total energy = 262.7 kcal/mol (262.2 without restraints) Performing minimization step: 3320. Total energy = 262.7 kcal/mol (262.2 without restraints) Performing minimization step: 3321. Total energy = 262.7 kcal/mol (262.1 without restraints) Performing minimization step: 3322. Total energy = 262.6 kcal/mol (262.1 without restraints) Performing minimization step: 3323. Total energy = 262.6 kcal/mol (262.1 without restraints) Performing minimization step: 3324. Total energy = 262.6 kcal/mol (262.1 without restraints) Performing minimization step: 3325. Total energy = 262.6 kcal/mol (262.1 without restraints) Performing minimization step: 3326. Total energy = 262.6 kcal/mol (262.1 without restraints) Performing minimization step: 3327. Total energy = 262.6 kcal/mol (262 without restraints) Performing minimization step: 3328. Total energy = 262.5 kcal/mol (262 without restraints) Performing minimization step: 3329. Total energy = 262.5 kcal/mol (262 without restraints) Performing minimization step: 3330. Total energy = 262.5 kcal/mol (262 without restraints) Performing minimization step: 3331. Total energy = 262.5 kcal/mol (262 without restraints) Performing minimization step: 3332. Total energy = 262.5 kcal/mol (262 without restraints) Performing minimization step: 3333. Total energy = 262.5 kcal/mol (261.9 without restraints) Performing minimization step: 3334. Total energy = 262.4 kcal/mol (261.9 without restraints) Performing minimization step: 3335. Total energy = 262.4 kcal/mol (261.9 without restraints) Performing minimization step: 3336. Total energy = 262.4 kcal/mol (261.9 without restraints) Performing minimization step: 3337. Total energy = 262.4 kcal/mol (261.9 without restraints) Performing minimization step: 3338. Total energy = 262.4 kcal/mol (261.9 without restraints) Performing minimization step: 3339. Total energy = 262.4 kcal/mol (261.8 without restraints) Performing minimization step: 3340. Total energy = 262.3 kcal/mol (261.8 without restraints) Performing minimization step: 3341. Total energy = 262.3 kcal/mol (261.8 without restraints) Performing minimization step: 3342. Total energy = 262.3 kcal/mol (261.8 without restraints) Performing minimization step: 3343. Total energy = 262.3 kcal/mol (261.8 without restraints) Performing minimization step: 3344. Total energy = 262.3 kcal/mol (261.8 without restraints) Performing minimization step: 3345. Total energy = 262.3 kcal/mol (261.7 without restraints) Performing minimization step: 3346. Total energy = 262.2 kcal/mol (261.7 without restraints) Performing minimization step: 3347. Total energy = 262.2 kcal/mol (261.7 without restraints) Performing minimization step: 3348. Total energy = 262.2 kcal/mol (261.7 without restraints) Performing minimization step: 3349. Total energy = 262.2 kcal/mol (261.7 without restraints) Performing minimization step: 3350. Total energy = 262.2 kcal/mol (261.7 without restraints) Performing minimization step: 3351. Total energy = 262.2 kcal/mol (261.6 without restraints) Performing minimization step: 3352. Total energy = 262.1 kcal/mol (261.6 without restraints) Performing minimization step: 3353. Total energy = 262.1 kcal/mol (261.6 without restraints) Performing minimization step: 3354. Total energy = 262.1 kcal/mol (261.6 without restraints) Performing minimization step: 3355. Total energy = 262.1 kcal/mol (261.6 without restraints) Performing minimization step: 3356. Total energy = 262.1 kcal/mol (261.6 without restraints) Performing minimization step: 3357. Total energy = 262.1 kcal/mol (261.5 without restraints) Performing minimization step: 3358. Total energy = 262.1 kcal/mol (261.5 without restraints) Performing minimization step: 3359. Total energy = 262 kcal/mol (261.5 without restraints) Performing minimization step: 3360. Total energy = 262 kcal/mol (261.5 without restraints) Performing minimization step: 3361. Total energy = 262 kcal/mol (261.5 without restraints) Performing minimization step: 3362. Total energy = 262 kcal/mol (261.5 without restraints) Performing minimization step: 3363. Total energy = 262 kcal/mol (261.4 without restraints) Performing minimization step: 3364. Total energy = 262 kcal/mol (261.4 without restraints) Performing minimization step: 3365. Total energy = 261.9 kcal/mol (261.4 without restraints) Performing minimization step: 3366. Total energy = 261.9 kcal/mol (261.4 without restraints) Performing minimization step: 3367. Total energy = 261.9 kcal/mol (261.4 without restraints) Performing minimization step: 3368. Total energy = 261.9 kcal/mol (261.4 without restraints) Performing minimization step: 3369. Total energy = 261.9 kcal/mol (261.3 without restraints) Performing minimization step: 3370. Total energy = 261.9 kcal/mol (261.3 without restraints) Performing minimization step: 3371. Total energy = 261.8 kcal/mol (261.3 without restraints) Performing minimization step: 3372. Total energy = 261.8 kcal/mol (261.3 without restraints) Performing minimization step: 3373. Total energy = 261.8 kcal/mol (261.3 without restraints) Performing minimization step: 3374. Total energy = 261.8 kcal/mol (261.3 without restraints) Performing minimization step: 3375. Total energy = 261.8 kcal/mol (261.2 without restraints) Performing minimization step: 3376. Total energy = 261.8 kcal/mol (261.2 without restraints) Performing minimization step: 3377. Total energy = 261.7 kcal/mol (261.2 without restraints) Performing minimization step: 3378. Total energy = 261.7 kcal/mol (261.2 without restraints) Performing minimization step: 3379. Total energy = 261.7 kcal/mol (261.2 without restraints) Performing minimization step: 3380. Total energy = 261.7 kcal/mol (261.2 without restraints) Performing minimization step: 3381. Total energy = 261.7 kcal/mol (261.2 without restraints) Performing minimization step: 3382. Total energy = 261.7 kcal/mol (261.1 without restraints) Performing minimization step: 3383. Total energy = 261.6 kcal/mol (261.1 without restraints) Performing minimization step: 3384. Total energy = 261.6 kcal/mol (261.1 without restraints) Performing minimization step: 3385. Total energy = 261.6 kcal/mol (261.1 without restraints) Performing minimization step: 3386. Total energy = 261.6 kcal/mol (261.1 without restraints) Performing minimization step: 3387. Total energy = 261.6 kcal/mol (261.1 without restraints) Performing minimization step: 3388. Total energy = 261.6 kcal/mol (261 without restraints) Performing minimization step: 3389. Total energy = 261.6 kcal/mol (261 without restraints) Performing minimization step: 3390. Total energy = 261.5 kcal/mol (261 without restraints) Performing minimization step: 3391. Total energy = 261.5 kcal/mol (261 without restraints) Performing minimization step: 3392. Total energy = 261.5 kcal/mol (261 without restraints) Performing minimization step: 3393. Total energy = 261.5 kcal/mol (261 without restraints) Performing minimization step: 3394. Total energy = 261.5 kcal/mol (260.9 without restraints) Performing minimization step: 3395. Total energy = 261.5 kcal/mol (260.9 without restraints) Performing minimization step: 3396. Total energy = 261.4 kcal/mol (260.9 without restraints) Performing minimization step: 3397. Total energy = 261.4 kcal/mol (260.9 without restraints) Performing minimization step: 3398. Total energy = 261.4 kcal/mol (260.9 without restraints) Performing minimization step: 3399. Total energy = 261.4 kcal/mol (260.9 without restraints) Performing minimization step: 3400. Total energy = 261.4 kcal/mol (260.8 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 261.4 kcal/mol (260.8 without restraints) Performing minimization step: 3402. Total energy = 261.3 kcal/mol (260.8 without restraints) Performing minimization step: 3403. Total energy = 261.3 kcal/mol (260.8 without restraints) Performing minimization step: 3404. Total energy = 261.3 kcal/mol (260.8 without restraints) Performing minimization step: 3405. Total energy = 261.3 kcal/mol (260.8 without restraints) Performing minimization step: 3406. Total energy = 261.3 kcal/mol (260.8 without restraints) Performing minimization step: 3407. Total energy = 261.3 kcal/mol (260.7 without restraints) Performing minimization step: 3408. Total energy = 261.3 kcal/mol (260.7 without restraints) Performing minimization step: 3409. Total energy = 261.2 kcal/mol (260.7 without restraints) Performing minimization step: 3410. Total energy = 261.2 kcal/mol (260.7 without restraints) Performing minimization step: 3411. Total energy = 261.2 kcal/mol (260.7 without restraints) Performing minimization step: 3412. Total energy = 261.2 kcal/mol (260.7 without restraints) Performing minimization step: 3413. Total energy = 261.2 kcal/mol (260.6 without restraints) Performing minimization step: 3414. Total energy = 261.2 kcal/mol (260.6 without restraints) Performing minimization step: 3415. Total energy = 261.1 kcal/mol (260.6 without restraints) Performing minimization step: 3416. Total energy = 261.1 kcal/mol (260.6 without restraints) Performing minimization step: 3417. Total energy = 261.1 kcal/mol (260.6 without restraints) Performing minimization step: 3418. Total energy = 261.1 kcal/mol (260.6 without restraints) Performing minimization step: 3419. Total energy = 261.1 kcal/mol (260.5 without restraints) Performing minimization step: 3420. Total energy = 261.1 kcal/mol (260.5 without restraints) Performing minimization step: 3421. Total energy = 261 kcal/mol (260.5 without restraints) Performing minimization step: 3422. Total energy = 261 kcal/mol (260.5 without restraints) Performing minimization step: 3423. Total energy = 261 kcal/mol (260.5 without restraints) Performing minimization step: 3424. Total energy = 261 kcal/mol (260.5 without restraints) Performing minimization step: 3425. Total energy = 261 kcal/mol (260.5 without restraints) Performing minimization step: 3426. Total energy = 261 kcal/mol (260.4 without restraints) Performing minimization step: 3427. Total energy = 261 kcal/mol (260.4 without restraints) Performing minimization step: 3428. Total energy = 260.9 kcal/mol (260.4 without restraints) Performing minimization step: 3429. Total energy = 260.9 kcal/mol (260.4 without restraints) Performing minimization step: 3430. Total energy = 260.9 kcal/mol (260.4 without restraints) Performing minimization step: 3431. Total energy = 260.9 kcal/mol (260.4 without restraints) Performing minimization step: 3432. Total energy = 260.9 kcal/mol (260.3 without restraints) Performing minimization step: 3433. Total energy = 260.9 kcal/mol (260.3 without restraints) Performing minimization step: 3434. Total energy = 260.8 kcal/mol (260.3 without restraints) Performing minimization step: 3435. Total energy = 260.8 kcal/mol (260.3 without restraints) Performing minimization step: 3436. Total energy = 260.8 kcal/mol (260.3 without restraints) Performing minimization step: 3437. Total energy = 260.8 kcal/mol (260.3 without restraints) Performing minimization step: 3438. Total energy = 260.8 kcal/mol (260.2 without restraints) Performing minimization step: 3439. Total energy = 260.8 kcal/mol (260.2 without restraints) Performing minimization step: 3440. Total energy = 260.8 kcal/mol (260.2 without restraints) Performing minimization step: 3441. Total energy = 260.7 kcal/mol (260.2 without restraints) Performing minimization step: 3442. Total energy = 260.7 kcal/mol (260.2 without restraints) Performing minimization step: 3443. Total energy = 260.7 kcal/mol (260.2 without restraints) Performing minimization step: 3444. Total energy = 260.7 kcal/mol (260.2 without restraints) Performing minimization step: 3445. Total energy = 260.7 kcal/mol (260.1 without restraints) Performing minimization step: 3446. Total energy = 260.7 kcal/mol (260.1 without restraints) Performing minimization step: 3447. Total energy = 260.6 kcal/mol (260.1 without restraints) Performing minimization step: 3448. Total energy = 260.6 kcal/mol (260.1 without restraints) Performing minimization step: 3449. Total energy = 260.6 kcal/mol (260.1 without restraints) Performing minimization step: 3450. Total energy = 260.6 kcal/mol (260.1 without restraints) Performing minimization step: 3451. Total energy = 260.6 kcal/mol (260 without restraints) Performing minimization step: 3452. Total energy = 260.6 kcal/mol (260 without restraints) Performing minimization step: 3453. Total energy = 260.6 kcal/mol (260 without restraints) Performing minimization step: 3454. Total energy = 260.5 kcal/mol (260 without restraints) Performing minimization step: 3455. Total energy = 260.5 kcal/mol (260 without restraints) Performing minimization step: 3456. Total energy = 260.5 kcal/mol (260 without restraints) Performing minimization step: 3457. Total energy = 260.5 kcal/mol (260 without restraints) Performing minimization step: 3458. Total energy = 260.5 kcal/mol (259.9 without restraints) Performing minimization step: 3459. Total energy = 260.5 kcal/mol (259.9 without restraints) Performing minimization step: 3460. Total energy = 260.4 kcal/mol (259.9 without restraints) Performing minimization step: 3461. Total energy = 260.4 kcal/mol (259.9 without restraints) Performing minimization step: 3462. Total energy = 260.4 kcal/mol (259.9 without restraints) Performing minimization step: 3463. Total energy = 260.4 kcal/mol (259.9 without restraints) Performing minimization step: 3464. Total energy = 260.4 kcal/mol (259.8 without restraints) Performing minimization step: 3465. Total energy = 260.4 kcal/mol (259.8 without restraints) Performing minimization step: 3466. Total energy = 260.4 kcal/mol (259.8 without restraints) Performing minimization step: 3467. Total energy = 260.3 kcal/mol (259.8 without restraints) Performing minimization step: 3468. Total energy = 260.3 kcal/mol (259.8 without restraints) Performing minimization step: 3469. Total energy = 260.3 kcal/mol (259.8 without restraints) Performing minimization step: 3470. Total energy = 260.3 kcal/mol (259.8 without restraints) Performing minimization step: 3471. Total energy = 260.3 kcal/mol (259.7 without restraints) Performing minimization step: 3472. Total energy = 260.3 kcal/mol (259.7 without restraints) Performing minimization step: 3473. Total energy = 260.2 kcal/mol (259.7 without restraints) Performing minimization step: 3474. Total energy = 260.2 kcal/mol (259.7 without restraints) Performing minimization step: 3475. Total energy = 260.2 kcal/mol (259.7 without restraints) Performing minimization step: 3476. Total energy = 260.2 kcal/mol (259.7 without restraints) Performing minimization step: 3477. Total energy = 260.2 kcal/mol (259.7 without restraints) Performing minimization step: 3478. Total energy = 260.2 kcal/mol (259.6 without restraints) Performing minimization step: 3479. Total energy = 260.2 kcal/mol (259.6 without restraints) Performing minimization step: 3480. Total energy = 260.1 kcal/mol (259.6 without restraints) Performing minimization step: 3481. Total energy = 260.1 kcal/mol (259.6 without restraints) Performing minimization step: 3482. Total energy = 260.1 kcal/mol (259.6 without restraints) Performing minimization step: 3483. Total energy = 260.1 kcal/mol (259.6 without restraints) Performing minimization step: 3484. Total energy = 260.1 kcal/mol (259.5 without restraints) Performing minimization step: 3485. Total energy = 260.1 kcal/mol (259.5 without restraints) Performing minimization step: 3486. Total energy = 260.1 kcal/mol (259.5 without restraints) Performing minimization step: 3487. Total energy = 260 kcal/mol (259.5 without restraints) Performing minimization step: 3488. Total energy = 260 kcal/mol (259.5 without restraints) Performing minimization step: 3489. Total energy = 260 kcal/mol (259.5 without restraints) Performing minimization step: 3490. Total energy = 260 kcal/mol (259.5 without restraints) Performing minimization step: 3491. Total energy = 260 kcal/mol (259.4 without restraints) Performing minimization step: 3492. Total energy = 260 kcal/mol (259.4 without restraints) Performing minimization step: 3493. Total energy = 259.9 kcal/mol (259.4 without restraints) Performing minimization step: 3494. Total energy = 259.9 kcal/mol (259.4 without restraints) Performing minimization step: 3495. Total energy = 259.9 kcal/mol (259.4 without restraints) Performing minimization step: 3496. Total energy = 259.9 kcal/mol (259.4 without restraints) Performing minimization step: 3497. Total energy = 259.9 kcal/mol (259.3 without restraints) Performing minimization step: 3498. Total energy = 259.9 kcal/mol (259.3 without restraints) Performing minimization step: 3499. Total energy = 259.9 kcal/mol (259.3 without restraints) Performing minimization step: 3500. Total energy = 259.8 kcal/mol (259.3 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 259.8 kcal/mol (259.3 without restraints) Performing minimization step: 3502. Total energy = 259.8 kcal/mol (259.3 without restraints) Performing minimization step: 3503. Total energy = 259.8 kcal/mol (259.3 without restraints) Performing minimization step: 3504. Total energy = 259.8 kcal/mol (259.2 without restraints) Performing minimization step: 3505. Total energy = 259.8 kcal/mol (259.2 without restraints) Performing minimization step: 3506. Total energy = 259.8 kcal/mol (259.2 without restraints) Performing minimization step: 3507. Total energy = 259.7 kcal/mol (259.2 without restraints) Performing minimization step: 3508. Total energy = 259.7 kcal/mol (259.2 without restraints) Performing minimization step: 3509. Total energy = 259.7 kcal/mol (259.2 without restraints) Performing minimization step: 3510. Total energy = 259.7 kcal/mol (259.2 without restraints) Performing minimization step: 3511. Total energy = 259.7 kcal/mol (259.1 without restraints) Performing minimization step: 3512. Total energy = 259.7 kcal/mol (259.1 without restraints) Performing minimization step: 3513. Total energy = 259.7 kcal/mol (259.1 without restraints) Performing minimization step: 3514. Total energy = 259.6 kcal/mol (259.1 without restraints) Performing minimization step: 3515. Total energy = 259.6 kcal/mol (259.1 without restraints) Performing minimization step: 3516. Total energy = 259.6 kcal/mol (259.1 without restraints) Performing minimization step: 3517. Total energy = 259.6 kcal/mol (259.1 without restraints) Performing minimization step: 3518. Total energy = 259.6 kcal/mol (259 without restraints) Performing minimization step: 3519. Total energy = 259.6 kcal/mol (259 without restraints) Performing minimization step: 3520. Total energy = 259.5 kcal/mol (259 without restraints) Performing minimization step: 3521. Total energy = 259.5 kcal/mol (259 without restraints) Performing minimization step: 3522. Total energy = 259.5 kcal/mol (259 without restraints) Performing minimization step: 3523. Total energy = 259.5 kcal/mol (259 without restraints) Performing minimization step: 3524. Total energy = 259.5 kcal/mol (258.9 without restraints) Performing minimization step: 3525. Total energy = 259.5 kcal/mol (258.9 without restraints) Performing minimization step: 3526. Total energy = 259.5 kcal/mol (258.9 without restraints) Performing minimization step: 3527. Total energy = 259.4 kcal/mol (258.9 without restraints) Performing minimization step: 3528. Total energy = 259.4 kcal/mol (258.9 without restraints) Performing minimization step: 3529. Total energy = 259.4 kcal/mol (258.9 without restraints) Performing minimization step: 3530. Total energy = 259.4 kcal/mol (258.9 without restraints) Performing minimization step: 3531. Total energy = 259.4 kcal/mol (258.8 without restraints) Performing minimization step: 3532. Total energy = 259.4 kcal/mol (258.8 without restraints) Performing minimization step: 3533. Total energy = 259.4 kcal/mol (258.8 without restraints) Performing minimization step: 3534. Total energy = 259.3 kcal/mol (258.8 without restraints) Performing minimization step: 3535. Total energy = 259.3 kcal/mol (258.8 without restraints) Performing minimization step: 3536. Total energy = 259.3 kcal/mol (258.8 without restraints) Performing minimization step: 3537. Total energy = 259.3 kcal/mol (258.8 without restraints) Performing minimization step: 3538. Total energy = 259.3 kcal/mol (258.7 without restraints) Performing minimization step: 3539. Total energy = 259.3 kcal/mol (258.7 without restraints) Performing minimization step: 3540. Total energy = 259.3 kcal/mol (258.7 without restraints) Performing minimization step: 3541. Total energy = 259.2 kcal/mol (258.7 without restraints) Performing minimization step: 3542. Total energy = 259.2 kcal/mol (258.7 without restraints) Performing minimization step: 3543. Total energy = 259.2 kcal/mol (258.7 without restraints) Performing minimization step: 3544. Total energy = 259.2 kcal/mol (258.7 without restraints) Performing minimization step: 3545. Total energy = 259.2 kcal/mol (258.6 without restraints) Performing minimization step: 3546. Total energy = 259.2 kcal/mol (258.6 without restraints) Performing minimization step: 3547. Total energy = 259.2 kcal/mol (258.6 without restraints) Performing minimization step: 3548. Total energy = 259.1 kcal/mol (258.6 without restraints) Performing minimization step: 3549. Total energy = 259.1 kcal/mol (258.6 without restraints) Performing minimization step: 3550. Total energy = 259.1 kcal/mol (258.6 without restraints) Performing minimization step: 3551. Total energy = 259.1 kcal/mol (258.6 without restraints) Performing minimization step: 3552. Total energy = 259.1 kcal/mol (258.5 without restraints) Performing minimization step: 3553. Total energy = 259.1 kcal/mol (258.5 without restraints) Performing minimization step: 3554. Total energy = 259.1 kcal/mol (258.5 without restraints) Performing minimization step: 3555. Total energy = 259 kcal/mol (258.5 without restraints) Performing minimization step: 3556. Total energy = 259 kcal/mol (258.5 without restraints) Performing minimization step: 3557. Total energy = 259 kcal/mol (258.5 without restraints) Performing minimization step: 3558. Total energy = 259 kcal/mol (258.5 without restraints) Performing minimization step: 3559. Total energy = 259 kcal/mol (258.4 without restraints) Performing minimization step: 3560. Total energy = 259 kcal/mol (258.4 without restraints) Performing minimization step: 3561. Total energy = 259 kcal/mol (258.4 without restraints) Performing minimization step: 3562. Total energy = 258.9 kcal/mol (258.4 without restraints) Performing minimization step: 3563. Total energy = 258.9 kcal/mol (258.4 without restraints) Performing minimization step: 3564. Total energy = 258.9 kcal/mol (258.4 without restraints) Performing minimization step: 3565. Total energy = 258.9 kcal/mol (258.4 without restraints) Performing minimization step: 3566. Total energy = 258.9 kcal/mol (258.3 without restraints) Performing minimization step: 3567. Total energy = 258.9 kcal/mol (258.3 without restraints) Performing minimization step: 3568. Total energy = 258.9 kcal/mol (258.3 without restraints) Performing minimization step: 3569. Total energy = 258.8 kcal/mol (258.3 without restraints) Performing minimization step: 3570. Total energy = 258.8 kcal/mol (258.3 without restraints) Performing minimization step: 3571. Total energy = 258.8 kcal/mol (258.3 without restraints) Performing minimization step: 3572. Total energy = 258.8 kcal/mol (258.3 without restraints) Performing minimization step: 3573. Total energy = 258.8 kcal/mol (258.2 without restraints) Performing minimization step: 3574. Total energy = 258.8 kcal/mol (258.2 without restraints) Performing minimization step: 3575. Total energy = 258.8 kcal/mol (258.2 without restraints) Performing minimization step: 3576. Total energy = 258.7 kcal/mol (258.2 without restraints) Performing minimization step: 3577. Total energy = 258.7 kcal/mol (258.2 without restraints) Performing minimization step: 3578. Total energy = 258.7 kcal/mol (258.2 without restraints) Performing minimization step: 3579. Total energy = 258.7 kcal/mol (258.2 without restraints) Performing minimization step: 3580. Total energy = 258.7 kcal/mol (258.1 without restraints) Performing minimization step: 3581. Total energy = 258.7 kcal/mol (258.1 without restraints) Performing minimization step: 3582. Total energy = 258.7 kcal/mol (258.1 without restraints) Performing minimization step: 3583. Total energy = 258.6 kcal/mol (258.1 without restraints) Performing minimization step: 3584. Total energy = 258.6 kcal/mol (258.1 without restraints) Performing minimization step: 3585. Total energy = 258.6 kcal/mol (258.1 without restraints) Performing minimization step: 3586. Total energy = 258.6 kcal/mol (258.1 without restraints) Performing minimization step: 3587. Total energy = 258.6 kcal/mol (258 without restraints) Performing minimization step: 3588. Total energy = 258.6 kcal/mol (258 without restraints) Performing minimization step: 3589. Total energy = 258.6 kcal/mol (258 without restraints) Performing minimization step: 3590. Total energy = 258.5 kcal/mol (258 without restraints) Performing minimization step: 3591. Total energy = 258.5 kcal/mol (258 without restraints) Performing minimization step: 3592. Total energy = 258.5 kcal/mol (258 without restraints) Performing minimization step: 3593. Total energy = 258.5 kcal/mol (258 without restraints) Performing minimization step: 3594. Total energy = 258.5 kcal/mol (257.9 without restraints) Performing minimization step: 3595. Total energy = 258.5 kcal/mol (257.9 without restraints) Performing minimization step: 3596. Total energy = 258.5 kcal/mol (257.9 without restraints) Performing minimization step: 3597. Total energy = 258.4 kcal/mol (257.9 without restraints) Performing minimization step: 3598. Total energy = 258.4 kcal/mol (257.9 without restraints) Performing minimization step: 3599. Total energy = 258.4 kcal/mol (257.9 without restraints) Performing minimization step: 3600. Total energy = 258.4 kcal/mol (257.9 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 258.4 kcal/mol (257.8 without restraints) Performing minimization step: 3602. Total energy = 258.4 kcal/mol (257.8 without restraints) Performing minimization step: 3603. Total energy = 258.4 kcal/mol (257.8 without restraints) Performing minimization step: 3604. Total energy = 258.4 kcal/mol (257.8 without restraints) Performing minimization step: 3605. Total energy = 258.3 kcal/mol (257.8 without restraints) Performing minimization step: 3606. Total energy = 258.3 kcal/mol (257.8 without restraints) Performing minimization step: 3607. Total energy = 258.3 kcal/mol (257.8 without restraints) Performing minimization step: 3608. Total energy = 258.3 kcal/mol (257.7 without restraints) Performing minimization step: 3609. Total energy = 258.3 kcal/mol (257.7 without restraints) Performing minimization step: 3610. Total energy = 258.3 kcal/mol (257.7 without restraints) Performing minimization step: 3611. Total energy = 258.3 kcal/mol (257.7 without restraints) Performing minimization step: 3612. Total energy = 258.2 kcal/mol (257.7 without restraints) Performing minimization step: 3613. Total energy = 258.2 kcal/mol (257.7 without restraints) Performing minimization step: 3614. Total energy = 258.2 kcal/mol (257.7 without restraints) Performing minimization step: 3615. Total energy = 258.2 kcal/mol (257.6 without restraints) Performing minimization step: 3616. Total energy = 258.2 kcal/mol (257.6 without restraints) Performing minimization step: 3617. Total energy = 258.2 kcal/mol (257.6 without restraints) Performing minimization step: 3618. Total energy = 258.2 kcal/mol (257.6 without restraints) Performing minimization step: 3619. Total energy = 258.1 kcal/mol (257.6 without restraints) Performing minimization step: 3620. Total energy = 258.1 kcal/mol (257.6 without restraints) Performing minimization step: 3621. Total energy = 258.1 kcal/mol (257.6 without restraints) Performing minimization step: 3622. Total energy = 258.1 kcal/mol (257.6 without restraints) Performing minimization step: 3623. Total energy = 258.1 kcal/mol (257.5 without restraints) Performing minimization step: 3624. Total energy = 258.1 kcal/mol (257.5 without restraints) Performing minimization step: 3625. Total energy = 258.1 kcal/mol (257.5 without restraints) Performing minimization step: 3626. Total energy = 258 kcal/mol (257.5 without restraints) Performing minimization step: 3627. Total energy = 258 kcal/mol (257.5 without restraints) Performing minimization step: 3628. Total energy = 258 kcal/mol (257.5 without restraints) Performing minimization step: 3629. Total energy = 258 kcal/mol (257.5 without restraints) Performing minimization step: 3630. Total energy = 258 kcal/mol (257.4 without restraints) Performing minimization step: 3631. Total energy = 258 kcal/mol (257.4 without restraints) Performing minimization step: 3632. Total energy = 258 kcal/mol (257.4 without restraints) Performing minimization step: 3633. Total energy = 258 kcal/mol (257.4 without restraints) Performing minimization step: 3634. Total energy = 257.9 kcal/mol (257.4 without restraints) Performing minimization step: 3635. Total energy = 257.9 kcal/mol (257.4 without restraints) Performing minimization step: 3636. Total energy = 257.9 kcal/mol (257.4 without restraints) Performing minimization step: 3637. Total energy = 257.9 kcal/mol (257.3 without restraints) Performing minimization step: 3638. Total energy = 257.9 kcal/mol (257.3 without restraints) Performing minimization step: 3639. Total energy = 257.9 kcal/mol (257.3 without restraints) Performing minimization step: 3640. Total energy = 257.9 kcal/mol (257.3 without restraints) Performing minimization step: 3641. Total energy = 257.8 kcal/mol (257.3 without restraints) Performing minimization step: 3642. Total energy = 257.8 kcal/mol (257.3 without restraints) Performing minimization step: 3643. Total energy = 257.8 kcal/mol (257.3 without restraints) Performing minimization step: 3644. Total energy = 257.8 kcal/mol (257.3 without restraints) Performing minimization step: 3645. Total energy = 257.8 kcal/mol (257.2 without restraints) Performing minimization step: 3646. Total energy = 257.8 kcal/mol (257.2 without restraints) Performing minimization step: 3647. Total energy = 257.8 kcal/mol (257.2 without restraints) Performing minimization step: 3648. Total energy = 257.8 kcal/mol (257.2 without restraints) Performing minimization step: 3649. Total energy = 257.7 kcal/mol (257.2 without restraints) Performing minimization step: 3650. Total energy = 257.7 kcal/mol (257.2 without restraints) Performing minimization step: 3651. Total energy = 257.7 kcal/mol (257.2 without restraints) Performing minimization step: 3652. Total energy = 257.7 kcal/mol (257.1 without restraints) Performing minimization step: 3653. Total energy = 257.7 kcal/mol (257.1 without restraints) Performing minimization step: 3654. Total energy = 257.7 kcal/mol (257.1 without restraints) Performing minimization step: 3655. Total energy = 257.7 kcal/mol (257.1 without restraints) Performing minimization step: 3656. Total energy = 257.6 kcal/mol (257.1 without restraints) Performing minimization step: 3657. Total energy = 257.6 kcal/mol (257.1 without restraints) Performing minimization step: 3658. Total energy = 257.6 kcal/mol (257.1 without restraints) Performing minimization step: 3659. Total energy = 257.6 kcal/mol (257 without restraints) Performing minimization step: 3660. Total energy = 257.6 kcal/mol (257 without restraints) Performing minimization step: 3661. Total energy = 257.6 kcal/mol (257 without restraints) Performing minimization step: 3662. Total energy = 257.6 kcal/mol (257 without restraints) Performing minimization step: 3663. Total energy = 257.6 kcal/mol (257 without restraints) Performing minimization step: 3664. Total energy = 257.5 kcal/mol (257 without restraints) Performing minimization step: 3665. Total energy = 257.5 kcal/mol (257 without restraints) Performing minimization step: 3666. Total energy = 257.5 kcal/mol (257 without restraints) Performing minimization step: 3667. Total energy = 257.5 kcal/mol (256.9 without restraints) Performing minimization step: 3668. Total energy = 257.5 kcal/mol (256.9 without restraints) Performing minimization step: 3669. Total energy = 257.5 kcal/mol (256.9 without restraints) Performing minimization step: 3670. Total energy = 257.5 kcal/mol (256.9 without restraints) Performing minimization step: 3671. Total energy = 257.4 kcal/mol (256.9 without restraints) Performing minimization step: 3672. Total energy = 257.4 kcal/mol (256.9 without restraints) Performing minimization step: 3673. Total energy = 257.4 kcal/mol (256.9 without restraints) Performing minimization step: 3674. Total energy = 257.4 kcal/mol (256.8 without restraints) Performing minimization step: 3675. Total energy = 257.4 kcal/mol (256.8 without restraints) Performing minimization step: 3676. Total energy = 257.4 kcal/mol (256.8 without restraints) Performing minimization step: 3677. Total energy = 257.4 kcal/mol (256.8 without restraints) Performing minimization step: 3678. Total energy = 257.4 kcal/mol (256.8 without restraints) Performing minimization step: 3679. Total energy = 257.3 kcal/mol (256.8 without restraints) Performing minimization step: 3680. Total energy = 257.3 kcal/mol (256.8 without restraints) Performing minimization step: 3681. Total energy = 257.3 kcal/mol (256.8 without restraints) Performing minimization step: 3682. Total energy = 257.3 kcal/mol (256.7 without restraints) Performing minimization step: 3683. Total energy = 257.3 kcal/mol (256.7 without restraints) Performing minimization step: 3684. Total energy = 257.3 kcal/mol (256.7 without restraints) Performing minimization step: 3685. Total energy = 257.3 kcal/mol (256.7 without restraints) Performing minimization step: 3686. Total energy = 257.2 kcal/mol (256.7 without restraints) Performing minimization step: 3687. Total energy = 257.2 kcal/mol (256.7 without restraints) Performing minimization step: 3688. Total energy = 257.2 kcal/mol (256.7 without restraints) Performing minimization step: 3689. Total energy = 257.2 kcal/mol (256.7 without restraints) Performing minimization step: 3690. Total energy = 257.2 kcal/mol (256.6 without restraints) Performing minimization step: 3691. Total energy = 257.2 kcal/mol (256.6 without restraints) Performing minimization step: 3692. Total energy = 257.2 kcal/mol (256.6 without restraints) Performing minimization step: 3693. Total energy = 257.2 kcal/mol (256.6 without restraints) Performing minimization step: 3694. Total energy = 257.1 kcal/mol (256.6 without restraints) Performing minimization step: 3695. Total energy = 257.1 kcal/mol (256.6 without restraints) Performing minimization step: 3696. Total energy = 257.1 kcal/mol (256.6 without restraints) Performing minimization step: 3697. Total energy = 257.1 kcal/mol (256.6 without restraints) Performing minimization step: 3698. Total energy = 257.1 kcal/mol (256.5 without restraints) Performing minimization step: 3699. Total energy = 257.1 kcal/mol (256.5 without restraints) Performing minimization step: 3700. Total energy = 257.1 kcal/mol (256.5 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 257.1 kcal/mol (256.5 without restraints) Performing minimization step: 3702. Total energy = 257.1 kcal/mol (256.5 without restraints) Performing minimization step: 3703. Total energy = 257 kcal/mol (256.5 without restraints) Performing minimization step: 3704. Total energy = 257 kcal/mol (256.5 without restraints) Performing minimization step: 3705. Total energy = 257 kcal/mol (256.5 without restraints) Performing minimization step: 3706. Total energy = 257 kcal/mol (256.4 without restraints) Performing minimization step: 3707. Total energy = 257 kcal/mol (256.4 without restraints) Performing minimization step: 3708. Total energy = 257 kcal/mol (256.4 without restraints) Performing minimization step: 3709. Total energy = 257 kcal/mol (256.4 without restraints) Performing minimization step: 3710. Total energy = 257 kcal/mol (256.4 without restraints) Performing minimization step: 3711. Total energy = 256.9 kcal/mol (256.4 without restraints) Performing minimization step: 3712. Total energy = 256.9 kcal/mol (256.4 without restraints) Performing minimization step: 3713. Total energy = 256.9 kcal/mol (256.4 without restraints) Performing minimization step: 3714. Total energy = 256.9 kcal/mol (256.3 without restraints) Performing minimization step: 3715. Total energy = 256.9 kcal/mol (256.3 without restraints) Performing minimization step: 3716. Total energy = 256.9 kcal/mol (256.3 without restraints) Performing minimization step: 3717. Total energy = 256.9 kcal/mol (256.3 without restraints) Performing minimization step: 3718. Total energy = 256.9 kcal/mol (256.3 without restraints) Performing minimization step: 3719. Total energy = 256.9 kcal/mol (256.3 without restraints) Performing minimization step: 3720. Total energy = 256.8 kcal/mol (256.3 without restraints) Performing minimization step: 3721. Total energy = 256.8 kcal/mol (256.3 without restraints) Performing minimization step: 3722. Total energy = 256.8 kcal/mol (256.3 without restraints) Performing minimization step: 3723. Total energy = 256.8 kcal/mol (256.2 without restraints) Performing minimization step: 3724. Total energy = 256.8 kcal/mol (256.2 without restraints) Performing minimization step: 3725. Total energy = 256.8 kcal/mol (256.2 without restraints) Performing minimization step: 3726. Total energy = 256.8 kcal/mol (256.2 without restraints) Performing minimization step: 3727. Total energy = 256.8 kcal/mol (256.2 without restraints) Performing minimization step: 3728. Total energy = 256.7 kcal/mol (256.2 without restraints) Performing minimization step: 3729. Total energy = 256.7 kcal/mol (256.2 without restraints) Performing minimization step: 3730. Total energy = 256.7 kcal/mol (256.2 without restraints) Performing minimization step: 3731. Total energy = 256.7 kcal/mol (256.2 without restraints) Performing minimization step: 3732. Total energy = 256.7 kcal/mol (256.1 without restraints) Performing minimization step: 3733. Total energy = 256.7 kcal/mol (256.1 without restraints) Performing minimization step: 3734. Total energy = 256.7 kcal/mol (256.1 without restraints) Performing minimization step: 3735. Total energy = 256.7 kcal/mol (256.1 without restraints) Performing minimization step: 3736. Total energy = 256.7 kcal/mol (256.1 without restraints) Performing minimization step: 3737. Total energy = 256.6 kcal/mol (256.1 without restraints) Performing minimization step: 3738. Total energy = 256.6 kcal/mol (256.1 without restraints) Performing minimization step: 3739. Total energy = 256.6 kcal/mol (256.1 without restraints) Performing minimization step: 3740. Total energy = 256.6 kcal/mol (256 without restraints) Performing minimization step: 3741. Total energy = 256.6 kcal/mol (256 without restraints) Performing minimization step: 3742. Total energy = 256.6 kcal/mol (256 without restraints) Performing minimization step: 3743. Total energy = 256.6 kcal/mol (256 without restraints) Performing minimization step: 3744. Total energy = 256.6 kcal/mol (256 without restraints) Performing minimization step: 3745. Total energy = 256.6 kcal/mol (256 without restraints) Performing minimization step: 3746. Total energy = 256.5 kcal/mol (256 without restraints) Performing minimization step: 3747. Total energy = 256.5 kcal/mol (256 without restraints) Performing minimization step: 3748. Total energy = 256.5 kcal/mol (256 without restraints) Performing minimization step: 3749. Total energy = 256.5 kcal/mol (255.9 without restraints) Performing minimization step: 3750. Total energy = 256.5 kcal/mol (255.9 without restraints) Performing minimization step: 3751. Total energy = 256.5 kcal/mol (255.9 without restraints) Performing minimization step: 3752. Total energy = 256.5 kcal/mol (255.9 without restraints) Performing minimization step: 3753. Total energy = 256.5 kcal/mol (255.9 without restraints) Performing minimization step: 3754. Total energy = 256.5 kcal/mol (255.9 without restraints) Performing minimization step: 3755. Total energy = 256.4 kcal/mol (255.9 without restraints) Performing minimization step: 3756. Total energy = 256.4 kcal/mol (255.9 without restraints) Performing minimization step: 3757. Total energy = 256.4 kcal/mol (255.9 without restraints) Performing minimization step: 3758. Total energy = 256.4 kcal/mol (255.8 without restraints) Performing minimization step: 3759. Total energy = 256.4 kcal/mol (255.8 without restraints) Performing minimization step: 3760. Total energy = 256.4 kcal/mol (255.8 without restraints) Performing minimization step: 3761. Total energy = 256.4 kcal/mol (255.8 without restraints) Performing minimization step: 3762. Total energy = 256.4 kcal/mol (255.8 without restraints) Performing minimization step: 3763. Total energy = 256.4 kcal/mol (255.8 without restraints) Performing minimization step: 3764. Total energy = 256.3 kcal/mol (255.8 without restraints) Performing minimization step: 3765. Total energy = 256.3 kcal/mol (255.8 without restraints) Performing minimization step: 3766. Total energy = 256.3 kcal/mol (255.7 without restraints) Performing minimization step: 3767. Total energy = 256.3 kcal/mol (255.7 without restraints) Performing minimization step: 3768. Total energy = 256.3 kcal/mol (255.7 without restraints) Performing minimization step: 3769. Total energy = 256.3 kcal/mol (255.7 without restraints) Performing minimization step: 3770. Total energy = 256.3 kcal/mol (255.7 without restraints) Performing minimization step: 3771. Total energy = 256.3 kcal/mol (255.7 without restraints) Performing minimization step: 3772. Total energy = 256.3 kcal/mol (255.7 without restraints) Performing minimization step: 3773. Total energy = 256.2 kcal/mol (255.7 without restraints) Performing minimization step: 3774. Total energy = 256.2 kcal/mol (255.7 without restraints) Performing minimization step: 3775. Total energy = 256.2 kcal/mol (255.7 without restraints) Performing minimization step: 3776. Total energy = 256.2 kcal/mol (255.6 without restraints) Performing minimization step: 3777. Total energy = 256.2 kcal/mol (255.6 without restraints) Performing minimization step: 3778. Total energy = 256.2 kcal/mol (255.6 without restraints) Performing minimization step: 3779. Total energy = 256.2 kcal/mol (255.6 without restraints) Performing minimization step: 3780. Total energy = 256.2 kcal/mol (255.6 without restraints) Performing minimization step: 3781. Total energy = 256.2 kcal/mol (255.6 without restraints) Performing minimization step: 3782. Total energy = 256.1 kcal/mol (255.6 without restraints) Performing minimization step: 3783. Total energy = 256.1 kcal/mol (255.6 without restraints) Performing minimization step: 3784. Total energy = 256.1 kcal/mol (255.5 without restraints) Performing minimization step: 3785. Total energy = 256.1 kcal/mol (255.5 without restraints) Performing minimization step: 3786. Total energy = 256.1 kcal/mol (255.5 without restraints) Performing minimization step: 3787. Total energy = 256.1 kcal/mol (255.5 without restraints) Performing minimization step: 3788. Total energy = 256.1 kcal/mol (255.5 without restraints) Performing minimization step: 3789. Total energy = 256.1 kcal/mol (255.5 without restraints) Performing minimization step: 3790. Total energy = 256.1 kcal/mol (255.5 without restraints) Performing minimization step: 3791. Total energy = 256 kcal/mol (255.5 without restraints) Performing minimization step: 3792. Total energy = 256 kcal/mol (255.5 without restraints) Performing minimization step: 3793. Total energy = 256 kcal/mol (255.5 without restraints) Performing minimization step: 3794. Total energy = 256 kcal/mol (255.4 without restraints) Performing minimization step: 3795. Total energy = 256 kcal/mol (255.4 without restraints) Performing minimization step: 3796. Total energy = 256 kcal/mol (255.4 without restraints) Performing minimization step: 3797. Total energy = 256 kcal/mol (255.4 without restraints) Performing minimization step: 3798. Total energy = 256 kcal/mol (255.4 without restraints) Performing minimization step: 3799. Total energy = 256 kcal/mol (255.4 without restraints) Performing minimization step: 3800. Total energy = 255.9 kcal/mol (255.4 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 255.9 kcal/mol (255.4 without restraints) Performing minimization step: 3802. Total energy = 255.9 kcal/mol (255.4 without restraints) Performing minimization step: 3803. Total energy = 255.9 kcal/mol (255.3 without restraints) Performing minimization step: 3804. Total energy = 255.9 kcal/mol (255.3 without restraints) Performing minimization step: 3805. Total energy = 255.9 kcal/mol (255.3 without restraints) Performing minimization step: 3806. Total energy = 255.9 kcal/mol (255.3 without restraints) Performing minimization step: 3807. Total energy = 255.9 kcal/mol (255.3 without restraints) Performing minimization step: 3808. Total energy = 255.9 kcal/mol (255.3 without restraints) Performing minimization step: 3809. Total energy = 255.8 kcal/mol (255.3 without restraints) Performing minimization step: 3810. Total energy = 255.8 kcal/mol (255.3 without restraints) Performing minimization step: 3811. Total energy = 255.8 kcal/mol (255.3 without restraints) Performing minimization step: 3812. Total energy = 255.8 kcal/mol (255.2 without restraints) Performing minimization step: 3813. Total energy = 255.8 kcal/mol (255.2 without restraints) Performing minimization step: 3814. Total energy = 255.8 kcal/mol (255.2 without restraints) Performing minimization step: 3815. Total energy = 255.8 kcal/mol (255.2 without restraints) Performing minimization step: 3816. Total energy = 255.8 kcal/mol (255.2 without restraints) Performing minimization step: 3817. Total energy = 255.8 kcal/mol (255.2 without restraints) Performing minimization step: 3818. Total energy = 255.8 kcal/mol (255.2 without restraints) Performing minimization step: 3819. Total energy = 255.7 kcal/mol (255.2 without restraints) Performing minimization step: 3820. Total energy = 255.7 kcal/mol (255.2 without restraints) Performing minimization step: 3821. Total energy = 255.7 kcal/mol (255.1 without restraints) Performing minimization step: 3822. Total energy = 255.7 kcal/mol (255.1 without restraints) Performing minimization step: 3823. Total energy = 255.7 kcal/mol (255.1 without restraints) Performing minimization step: 3824. Total energy = 255.7 kcal/mol (255.1 without restraints) Performing minimization step: 3825. Total energy = 255.7 kcal/mol (255.1 without restraints) Performing minimization step: 3826. Total energy = 255.7 kcal/mol (255.1 without restraints) Performing minimization step: 3827. Total energy = 255.7 kcal/mol (255.1 without restraints) Performing minimization step: 3828. Total energy = 255.6 kcal/mol (255.1 without restraints) Performing minimization step: 3829. Total energy = 255.6 kcal/mol (255.1 without restraints) Performing minimization step: 3830. Total energy = 255.6 kcal/mol (255.1 without restraints) Performing minimization step: 3831. Total energy = 255.6 kcal/mol (255 without restraints) Performing minimization step: 3832. Total energy = 255.6 kcal/mol (255 without restraints) Performing minimization step: 3833. Total energy = 255.6 kcal/mol (255 without restraints) Performing minimization step: 3834. Total energy = 255.6 kcal/mol (255 without restraints) Performing minimization step: 3835. Total energy = 255.6 kcal/mol (255 without restraints) Performing minimization step: 3836. Total energy = 255.6 kcal/mol (255 without restraints) Performing minimization step: 3837. Total energy = 255.6 kcal/mol (255 without restraints) Performing minimization step: 3838. Total energy = 255.5 kcal/mol (255 without restraints) Performing minimization step: 3839. Total energy = 255.5 kcal/mol (255 without restraints) Performing minimization step: 3840. Total energy = 255.5 kcal/mol (254.9 without restraints) Performing minimization step: 3841. Total energy = 255.5 kcal/mol (254.9 without restraints) Performing minimization step: 3842. Total energy = 255.5 kcal/mol (254.9 without restraints) Performing minimization step: 3843. Total energy = 255.5 kcal/mol (254.9 without restraints) Performing minimization step: 3844. Total energy = 255.5 kcal/mol (254.9 without restraints) Performing minimization step: 3845. Total energy = 255.5 kcal/mol (254.9 without restraints) Performing minimization step: 3846. Total energy = 255.5 kcal/mol (254.9 without restraints) Performing minimization step: 3847. Total energy = 255.5 kcal/mol (254.9 without restraints) Performing minimization step: 3848. Total energy = 255.4 kcal/mol (254.9 without restraints) Performing minimization step: 3849. Total energy = 255.4 kcal/mol (254.9 without restraints) Performing minimization step: 3850. Total energy = 255.4 kcal/mol (254.8 without restraints) Performing minimization step: 3851. Total energy = 255.4 kcal/mol (254.8 without restraints) Performing minimization step: 3852. Total energy = 255.4 kcal/mol (254.8 without restraints) Performing minimization step: 3853. Total energy = 255.4 kcal/mol (254.8 without restraints) Performing minimization step: 3854. Total energy = 255.4 kcal/mol (254.8 without restraints) Performing minimization step: 3855. Total energy = 255.4 kcal/mol (254.8 without restraints) Performing minimization step: 3856. Total energy = 255.4 kcal/mol (254.8 without restraints) Performing minimization step: 3857. Total energy = 255.4 kcal/mol (254.8 without restraints) Performing minimization step: 3858. Total energy = 255.3 kcal/mol (254.8 without restraints) Performing minimization step: 3859. Total energy = 255.3 kcal/mol (254.8 without restraints) Performing minimization step: 3860. Total energy = 255.3 kcal/mol (254.7 without restraints) Performing minimization step: 3861. Total energy = 255.3 kcal/mol (254.7 without restraints) Performing minimization step: 3862. Total energy = 255.3 kcal/mol (254.7 without restraints) Performing minimization step: 3863. Total energy = 255.3 kcal/mol (254.7 without restraints) Performing minimization step: 3864. Total energy = 255.3 kcal/mol (254.7 without restraints) Performing minimization step: 3865. Total energy = 255.3 kcal/mol (254.7 without restraints) Performing minimization step: 3866. Total energy = 255.3 kcal/mol (254.7 without restraints) Performing minimization step: 3867. Total energy = 255.2 kcal/mol (254.7 without restraints) Performing minimization step: 3868. Total energy = 255.2 kcal/mol (254.7 without restraints) Performing minimization step: 3869. Total energy = 255.2 kcal/mol (254.7 without restraints) Performing minimization step: 3870. Total energy = 255.2 kcal/mol (254.6 without restraints) Performing minimization step: 3871. Total energy = 255.2 kcal/mol (254.6 without restraints) Performing minimization step: 3872. Total energy = 255.2 kcal/mol (254.6 without restraints) Performing minimization step: 3873. Total energy = 255.2 kcal/mol (254.6 without restraints) Performing minimization step: 3874. Total energy = 255.2 kcal/mol (254.6 without restraints) Performing minimization step: 3875. Total energy = 255.2 kcal/mol (254.6 without restraints) Performing minimization step: 3876. Total energy = 255.2 kcal/mol (254.6 without restraints) Performing minimization step: 3877. Total energy = 255.1 kcal/mol (254.6 without restraints) Performing minimization step: 3878. Total energy = 255.1 kcal/mol (254.6 without restraints) Performing minimization step: 3879. Total energy = 255.1 kcal/mol (254.6 without restraints) Performing minimization step: 3880. Total energy = 255.1 kcal/mol (254.5 without restraints) Performing minimization step: 3881. Total energy = 255.1 kcal/mol (254.5 without restraints) Performing minimization step: 3882. Total energy = 255.1 kcal/mol (254.5 without restraints) Performing minimization step: 3883. Total energy = 255.1 kcal/mol (254.5 without restraints) Performing minimization step: 3884. Total energy = 255.1 kcal/mol (254.5 without restraints) Performing minimization step: 3885. Total energy = 255.1 kcal/mol (254.5 without restraints) Performing minimization step: 3886. Total energy = 255.1 kcal/mol (254.5 without restraints) Performing minimization step: 3887. Total energy = 255 kcal/mol (254.5 without restraints) Performing minimization step: 3888. Total energy = 255 kcal/mol (254.5 without restraints) Performing minimization step: 3889. Total energy = 255 kcal/mol (254.4 without restraints) Performing minimization step: 3890. Total energy = 255 kcal/mol (254.4 without restraints) Performing minimization step: 3891. Total energy = 255 kcal/mol (254.4 without restraints) Performing minimization step: 3892. Total energy = 255 kcal/mol (254.4 without restraints) Performing minimization step: 3893. Total energy = 255 kcal/mol (254.4 without restraints) Performing minimization step: 3894. Total energy = 255 kcal/mol (254.4 without restraints) Performing minimization step: 3895. Total energy = 255 kcal/mol (254.4 without restraints) Performing minimization step: 3896. Total energy = 255 kcal/mol (254.4 without restraints) Performing minimization step: 3897. Total energy = 255 kcal/mol (254.4 without restraints) Performing minimization step: 3898. Total energy = 254.9 kcal/mol (254.4 without restraints) Performing minimization step: 3899. Total energy = 254.9 kcal/mol (254.4 without restraints) Performing minimization step: 3900. Total energy = 254.9 kcal/mol (254.3 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 254.9 kcal/mol (254.3 without restraints) Performing minimization step: 3902. Total energy = 254.9 kcal/mol (254.3 without restraints) Performing minimization step: 3903. Total energy = 254.9 kcal/mol (254.3 without restraints) Performing minimization step: 3904. Total energy = 254.9 kcal/mol (254.3 without restraints) Performing minimization step: 3905. Total energy = 254.9 kcal/mol (254.3 without restraints) Performing minimization step: 3906. Total energy = 254.9 kcal/mol (254.3 without restraints) Performing minimization step: 3907. Total energy = 254.9 kcal/mol (254.3 without restraints) Performing minimization step: 3908. Total energy = 254.8 kcal/mol (254.3 without restraints) Performing minimization step: 3909. Total energy = 254.8 kcal/mol (254.3 without restraints) Performing minimization step: 3910. Total energy = 254.8 kcal/mol (254.2 without restraints) Performing minimization step: 3911. Total energy = 254.8 kcal/mol (254.2 without restraints) Performing minimization step: 3912. Total energy = 254.8 kcal/mol (254.2 without restraints) Performing minimization step: 3913. Total energy = 254.8 kcal/mol (254.2 without restraints) Performing minimization step: 3914. Total energy = 254.8 kcal/mol (254.2 without restraints) Performing minimization step: 3915. Total energy = 254.8 kcal/mol (254.2 without restraints) Performing minimization step: 3916. Total energy = 254.8 kcal/mol (254.2 without restraints) Performing minimization step: 3917. Total energy = 254.8 kcal/mol (254.2 without restraints) Performing minimization step: 3918. Total energy = 254.7 kcal/mol (254.2 without restraints) Performing minimization step: 3919. Total energy = 254.7 kcal/mol (254.2 without restraints) Performing minimization step: 3920. Total energy = 254.7 kcal/mol (254.1 without restraints) Performing minimization step: 3921. Total energy = 254.7 kcal/mol (254.1 without restraints) Performing minimization step: 3922. Total energy = 254.7 kcal/mol (254.1 without restraints) Performing minimization step: 3923. Total energy = 254.7 kcal/mol (254.1 without restraints) Performing minimization step: 3924. Total energy = 254.7 kcal/mol (254.1 without restraints) Performing minimization step: 3925. Total energy = 254.7 kcal/mol (254.1 without restraints) Performing minimization step: 3926. Total energy = 254.7 kcal/mol (254.1 without restraints) Performing minimization step: 3927. Total energy = 254.7 kcal/mol (254.1 without restraints) Performing minimization step: 3928. Total energy = 254.7 kcal/mol (254.1 without restraints) Performing minimization step: 3929. Total energy = 254.6 kcal/mol (254.1 without restraints) Performing minimization step: 3930. Total energy = 254.6 kcal/mol (254 without restraints) Performing minimization step: 3931. Total energy = 254.6 kcal/mol (254 without restraints) Performing minimization step: 3932. Total energy = 254.6 kcal/mol (254 without restraints) Performing minimization step: 3933. Total energy = 254.6 kcal/mol (254 without restraints) Performing minimization step: 3934. Total energy = 254.6 kcal/mol (254 without restraints) Performing minimization step: 3935. Total energy = 254.6 kcal/mol (254 without restraints) Performing minimization step: 3936. Total energy = 254.6 kcal/mol (254 without restraints) Performing minimization step: 3937. Total energy = 254.6 kcal/mol (254 without restraints) Performing minimization step: 3938. Total energy = 254.6 kcal/mol (254 without restraints) Performing minimization step: 3939. Total energy = 254.5 kcal/mol (254 without restraints) Performing minimization step: 3940. Total energy = 254.5 kcal/mol (254 without restraints) Performing minimization step: 3941. Total energy = 254.5 kcal/mol (253.9 without restraints) Performing minimization step: 3942. Total energy = 254.5 kcal/mol (253.9 without restraints) Performing minimization step: 3943. Total energy = 254.5 kcal/mol (253.9 without restraints) Performing minimization step: 3944. Total energy = 254.5 kcal/mol (253.9 without restraints) Performing minimization step: 3945. Total energy = 254.5 kcal/mol (253.9 without restraints) Performing minimization step: 3946. Total energy = 254.5 kcal/mol (253.9 without restraints) Performing minimization step: 3947. Total energy = 254.5 kcal/mol (253.9 without restraints) Performing minimization step: 3948. Total energy = 254.5 kcal/mol (253.9 without restraints) Performing minimization step: 3949. Total energy = 254.5 kcal/mol (253.9 without restraints) Performing minimization step: 3950. Total energy = 254.4 kcal/mol (253.9 without restraints) Performing minimization step: 3951. Total energy = 254.4 kcal/mol (253.9 without restraints) Performing minimization step: 3952. Total energy = 254.4 kcal/mol (253.8 without restraints) Performing minimization step: 3953. Total energy = 254.4 kcal/mol (253.8 without restraints) Performing minimization step: 3954. Total energy = 254.4 kcal/mol (253.8 without restraints) Performing minimization step: 3955. Total energy = 254.4 kcal/mol (253.8 without restraints) Performing minimization step: 3956. Total energy = 254.4 kcal/mol (253.8 without restraints) Performing minimization step: 3957. Total energy = 254.4 kcal/mol (253.8 without restraints) Performing minimization step: 3958. Total energy = 254.4 kcal/mol (253.8 without restraints) Performing minimization step: 3959. Total energy = 254.4 kcal/mol (253.8 without restraints) Performing minimization step: 3960. Total energy = 254.4 kcal/mol (253.8 without restraints) Performing minimization step: 3961. Total energy = 254.3 kcal/mol (253.8 without restraints) Performing minimization step: 3962. Total energy = 254.3 kcal/mol (253.7 without restraints) Performing minimization step: 3963. Total energy = 254.3 kcal/mol (253.7 without restraints) Performing minimization step: 3964. Total energy = 254.3 kcal/mol (253.7 without restraints) Performing minimization step: 3965. Total energy = 254.3 kcal/mol (253.7 without restraints) Performing minimization step: 3966. Total energy = 254.3 kcal/mol (253.7 without restraints) Performing minimization step: 3967. Total energy = 254.3 kcal/mol (253.7 without restraints) Performing minimization step: 3968. Total energy = 254.3 kcal/mol (253.7 without restraints) Performing minimization step: 3969. Total energy = 254.3 kcal/mol (253.7 without restraints) Performing minimization step: 3970. Total energy = 254.3 kcal/mol (253.7 without restraints) Performing minimization step: 3971. Total energy = 254.3 kcal/mol (253.7 without restraints) Performing minimization step: 3972. Total energy = 254.2 kcal/mol (253.7 without restraints) Performing minimization step: 3973. Total energy = 254.2 kcal/mol (253.6 without restraints) Performing minimization step: 3974. Total energy = 254.2 kcal/mol (253.6 without restraints) Performing minimization step: 3975. Total energy = 254.2 kcal/mol (253.6 without restraints) Performing minimization step: 3976. Total energy = 254.2 kcal/mol (253.6 without restraints) Performing minimization step: 3977. Total energy = 254.2 kcal/mol (253.6 without restraints) Performing minimization step: 3978. Total energy = 254.2 kcal/mol (253.6 without restraints) Performing minimization step: 3979. Total energy = 254.2 kcal/mol (253.6 without restraints) Performing minimization step: 3980. Total energy = 254.2 kcal/mol (253.6 without restraints) Performing minimization step: 3981. Total energy = 254.2 kcal/mol (253.6 without restraints) Performing minimization step: 3982. Total energy = 254.1 kcal/mol (253.6 without restraints) Performing minimization step: 3983. Total energy = 254.1 kcal/mol (253.6 without restraints) Performing minimization step: 3984. Total energy = 254.1 kcal/mol (253.5 without restraints) Performing minimization step: 3985. Total energy = 254.1 kcal/mol (253.5 without restraints) Performing minimization step: 3986. Total energy = 254.1 kcal/mol (253.5 without restraints) Performing minimization step: 3987. Total energy = 254.1 kcal/mol (253.5 without restraints) Performing minimization step: 3988. Total energy = 254.1 kcal/mol (253.5 without restraints) Performing minimization step: 3989. Total energy = 254.1 kcal/mol (253.5 without restraints) Performing minimization step: 3990. Total energy = 254.1 kcal/mol (253.5 without restraints) Performing minimization step: 3991. Total energy = 254.1 kcal/mol (253.5 without restraints) Performing minimization step: 3992. Total energy = 254.1 kcal/mol (253.5 without restraints) Performing minimization step: 3993. Total energy = 254.1 kcal/mol (253.5 without restraints) Performing minimization step: 3994. Total energy = 254 kcal/mol (253.5 without restraints) Performing minimization step: 3995. Total energy = 254 kcal/mol (253.4 without restraints) Performing minimization step: 3996. Total energy = 254 kcal/mol (253.4 without restraints) Performing minimization step: 3997. Total energy = 254 kcal/mol (253.4 without restraints) Performing minimization step: 3998. Total energy = 254 kcal/mol (253.4 without restraints) Performing minimization step: 3999. Total energy = 254 kcal/mol (253.4 without restraints) Performing minimization step: 4000. Total energy = 254 kcal/mol (253.4 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 254 kcal/mol (253.4 without restraints) Performing minimization step: 4002. Total energy = 254 kcal/mol (253.4 without restraints) Performing minimization step: 4003. Total energy = 254 kcal/mol (253.4 without restraints) Performing minimization step: 4004. Total energy = 254 kcal/mol (253.4 without restraints) Performing minimization step: 4005. Total energy = 253.9 kcal/mol (253.4 without restraints) Performing minimization step: 4006. Total energy = 253.9 kcal/mol (253.3 without restraints) Performing minimization step: 4007. Total energy = 253.9 kcal/mol (253.3 without restraints) Performing minimization step: 4008. Total energy = 253.9 kcal/mol (253.3 without restraints) Performing minimization step: 4009. Total energy = 253.9 kcal/mol (253.3 without restraints) Performing minimization step: 4010. Total energy = 253.9 kcal/mol (253.3 without restraints) Performing minimization step: 4011. Total energy = 253.9 kcal/mol (253.3 without restraints) Performing minimization step: 4012. Total energy = 253.9 kcal/mol (253.3 without restraints) Performing minimization step: 4013. Total energy = 253.9 kcal/mol (253.3 without restraints) Performing minimization step: 4014. Total energy = 253.9 kcal/mol (253.3 without restraints) Performing minimization step: 4015. Total energy = 253.9 kcal/mol (253.3 without restraints) Performing minimization step: 4016. Total energy = 253.8 kcal/mol (253.3 without restraints) Performing minimization step: 4017. Total energy = 253.8 kcal/mol (253.2 without restraints) Performing minimization step: 4018. Total energy = 253.8 kcal/mol (253.2 without restraints) Performing minimization step: 4019. Total energy = 253.8 kcal/mol (253.2 without restraints) Performing minimization step: 4020. Total energy = 253.8 kcal/mol (253.2 without restraints) Performing minimization step: 4021. Total energy = 253.8 kcal/mol (253.2 without restraints) Performing minimization step: 4022. Total energy = 253.8 kcal/mol (253.2 without restraints) Performing minimization step: 4023. Total energy = 253.8 kcal/mol (253.2 without restraints) Performing minimization step: 4024. Total energy = 253.8 kcal/mol (253.2 without restraints) Performing minimization step: 4025. Total energy = 253.8 kcal/mol (253.2 without restraints) Performing minimization step: 4026. Total energy = 253.8 kcal/mol (253.2 without restraints) Performing minimization step: 4027. Total energy = 253.7 kcal/mol (253.2 without restraints) Performing minimization step: 4028. Total energy = 253.7 kcal/mol (253.1 without restraints) Performing minimization step: 4029. Total energy = 253.7 kcal/mol (253.1 without restraints) Performing minimization step: 4030. Total energy = 253.7 kcal/mol (253.1 without restraints) Performing minimization step: 4031. Total energy = 253.7 kcal/mol (253.1 without restraints) Performing minimization step: 4032. Total energy = 253.7 kcal/mol (253.1 without restraints) Performing minimization step: 4033. Total energy = 253.7 kcal/mol (253.1 without restraints) Performing minimization step: 4034. Total energy = 253.7 kcal/mol (253.1 without restraints) Performing minimization step: 4035. Total energy = 253.7 kcal/mol (253.1 without restraints) Performing minimization step: 4036. Total energy = 253.7 kcal/mol (253.1 without restraints) Performing minimization step: 4037. Total energy = 253.7 kcal/mol (253.1 without restraints) Performing minimization step: 4038. Total energy = 253.7 kcal/mol (253.1 without restraints) Performing minimization step: 4039. Total energy = 253.6 kcal/mol (253 without restraints) Performing minimization step: 4040. Total energy = 253.6 kcal/mol (253 without restraints) Performing minimization step: 4041. Total energy = 253.6 kcal/mol (253 without restraints) Performing minimization step: 4042. Total energy = 253.6 kcal/mol (253 without restraints) Performing minimization step: 4043. Total energy = 253.6 kcal/mol (253 without restraints) Performing minimization step: 4044. Total energy = 253.6 kcal/mol (253 without restraints) Performing minimization step: 4045. Total energy = 253.6 kcal/mol (253 without restraints) Performing minimization step: 4046. Total energy = 253.6 kcal/mol (253 without restraints) Performing minimization step: 4047. Total energy = 253.6 kcal/mol (253 without restraints) Performing minimization step: 4048. Total energy = 253.6 kcal/mol (253 without restraints) Performing minimization step: 4049. Total energy = 253.6 kcal/mol (253 without restraints) Performing minimization step: 4050. Total energy = 253.5 kcal/mol (253 without restraints) Performing minimization step: 4051. Total energy = 253.5 kcal/mol (252.9 without restraints) Performing minimization step: 4052. Total energy = 253.5 kcal/mol (252.9 without restraints) Performing minimization step: 4053. Total energy = 253.5 kcal/mol (252.9 without restraints) Performing minimization step: 4054. Total energy = 253.5 kcal/mol (252.9 without restraints) Performing minimization step: 4055. Total energy = 253.5 kcal/mol (252.9 without restraints) Performing minimization step: 4056. Total energy = 253.5 kcal/mol (252.9 without restraints) Performing minimization step: 4057. Total energy = 253.5 kcal/mol (252.9 without restraints) Performing minimization step: 4058. Total energy = 253.5 kcal/mol (252.9 without restraints) Performing minimization step: 4059. Total energy = 253.5 kcal/mol (252.9 without restraints) Performing minimization step: 4060. Total energy = 253.5 kcal/mol (252.9 without restraints) Performing minimization step: 4061. Total energy = 253.5 kcal/mol (252.9 without restraints) Performing minimization step: 4062. Total energy = 253.4 kcal/mol (252.8 without restraints) Performing minimization step: 4063. Total energy = 253.4 kcal/mol (252.8 without restraints) Performing minimization step: 4064. Total energy = 253.4 kcal/mol (252.8 without restraints) Performing minimization step: 4065. Total energy = 253.4 kcal/mol (252.8 without restraints) Performing minimization step: 4066. Total energy = 253.4 kcal/mol (252.8 without restraints) Performing minimization step: 4067. Total energy = 253.4 kcal/mol (252.8 without restraints) Performing minimization step: 4068. Total energy = 253.4 kcal/mol (252.8 without restraints) Performing minimization step: 4069. Total energy = 253.4 kcal/mol (252.8 without restraints) Performing minimization step: 4070. Total energy = 253.4 kcal/mol (252.8 without restraints) Performing minimization step: 4071. Total energy = 253.4 kcal/mol (252.8 without restraints) Performing minimization step: 4072. Total energy = 253.4 kcal/mol (252.8 without restraints) Performing minimization step: 4073. Total energy = 253.4 kcal/mol (252.8 without restraints) Performing minimization step: 4074. Total energy = 253.3 kcal/mol (252.7 without restraints) Performing minimization step: 4075. Total energy = 253.3 kcal/mol (252.7 without restraints) Performing minimization step: 4076. Total energy = 253.3 kcal/mol (252.7 without restraints) Performing minimization step: 4077. Total energy = 253.3 kcal/mol (252.7 without restraints) Performing minimization step: 4078. Total energy = 253.3 kcal/mol (252.7 without restraints) Performing minimization step: 4079. Total energy = 253.3 kcal/mol (252.7 without restraints) Performing minimization step: 4080. Total energy = 253.3 kcal/mol (252.7 without restraints) Performing minimization step: 4081. Total energy = 253.3 kcal/mol (252.7 without restraints) Performing minimization step: 4082. Total energy = 253.3 kcal/mol (252.7 without restraints) Performing minimization step: 4083. Total energy = 253.3 kcal/mol (252.7 without restraints) Performing minimization step: 4084. Total energy = 253.3 kcal/mol (252.7 without restraints) Performing minimization step: 4085. Total energy = 253.3 kcal/mol (252.7 without restraints) Performing minimization step: 4086. Total energy = 253.2 kcal/mol (252.6 without restraints) Performing minimization step: 4087. Total energy = 253.2 kcal/mol (252.6 without restraints) Performing minimization step: 4088. Total energy = 253.2 kcal/mol (252.6 without restraints) Performing minimization step: 4089. Total energy = 253.2 kcal/mol (252.6 without restraints) Performing minimization step: 4090. Total energy = 253.2 kcal/mol (252.6 without restraints) Performing minimization step: 4091. Total energy = 253.2 kcal/mol (252.6 without restraints) Performing minimization step: 4092. Total energy = 253.2 kcal/mol (252.6 without restraints) Performing minimization step: 4093. Total energy = 253.2 kcal/mol (252.6 without restraints) Performing minimization step: 4094. Total energy = 253.2 kcal/mol (252.6 without restraints) Performing minimization step: 4095. Total energy = 253.2 kcal/mol (252.6 without restraints) Performing minimization step: 4096. Total energy = 253.2 kcal/mol (252.6 without restraints) Performing minimization step: 4097. Total energy = 253.2 kcal/mol (252.6 without restraints) Performing minimization step: 4098. Total energy = 253.1 kcal/mol (252.5 without restraints) Performing minimization step: 4099. Total energy = 253.1 kcal/mol (252.5 without restraints) Performing minimization step: 4100. Total energy = 253.1 kcal/mol (252.5 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 253.1 kcal/mol (252.5 without restraints) Performing minimization step: 4102. Total energy = 253.1 kcal/mol (252.5 without restraints) Performing minimization step: 4103. Total energy = 253.1 kcal/mol (252.5 without restraints) Performing minimization step: 4104. Total energy = 253.1 kcal/mol (252.5 without restraints) Performing minimization step: 4105. Total energy = 253.1 kcal/mol (252.5 without restraints) Performing minimization step: 4106. Total energy = 253.1 kcal/mol (252.5 without restraints) Performing minimization step: 4107. Total energy = 253.1 kcal/mol (252.5 without restraints) Performing minimization step: 4108. Total energy = 253.1 kcal/mol (252.5 without restraints) Performing minimization step: 4109. Total energy = 253.1 kcal/mol (252.5 without restraints) Performing minimization step: 4110. Total energy = 253 kcal/mol (252.4 without restraints) Performing minimization step: 4111. Total energy = 253 kcal/mol (252.4 without restraints) Performing minimization step: 4112. Total energy = 253 kcal/mol (252.4 without restraints) Performing minimization step: 4113. Total energy = 253 kcal/mol (252.4 without restraints) Performing minimization step: 4114. Total energy = 253 kcal/mol (252.4 without restraints) Performing minimization step: 4115. Total energy = 253 kcal/mol (252.4 without restraints) Performing minimization step: 4116. Total energy = 253 kcal/mol (252.4 without restraints) Performing minimization step: 4117. Total energy = 253 kcal/mol (252.4 without restraints) Performing minimization step: 4118. Total energy = 253 kcal/mol (252.4 without restraints) Performing minimization step: 4119. Total energy = 253 kcal/mol (252.4 without restraints) Performing minimization step: 4120. Total energy = 253 kcal/mol (252.4 without restraints) Performing minimization step: 4121. Total energy = 253 kcal/mol (252.4 without restraints) Performing minimization step: 4122. Total energy = 252.9 kcal/mol (252.3 without restraints) Performing minimization step: 4123. Total energy = 252.9 kcal/mol (252.3 without restraints) Performing minimization step: 4124. Total energy = 252.9 kcal/mol (252.3 without restraints) Performing minimization step: 4125. Total energy = 252.9 kcal/mol (252.3 without restraints) Performing minimization step: 4126. Total energy = 252.9 kcal/mol (252.3 without restraints) Performing minimization step: 4127. Total energy = 252.9 kcal/mol (252.3 without restraints) Performing minimization step: 4128. Total energy = 252.9 kcal/mol (252.3 without restraints) Performing minimization step: 4129. Total energy = 252.9 kcal/mol (252.3 without restraints) Performing minimization step: 4130. Total energy = 252.9 kcal/mol (252.3 without restraints) Performing minimization step: 4131. Total energy = 252.9 kcal/mol (252.3 without restraints) Performing minimization step: 4132. Total energy = 252.9 kcal/mol (252.3 without restraints) Performing minimization step: 4133. Total energy = 252.9 kcal/mol (252.3 without restraints) Performing minimization step: 4134. Total energy = 252.8 kcal/mol (252.2 without restraints) Performing minimization step: 4135. Total energy = 252.8 kcal/mol (252.2 without restraints) Performing minimization step: 4136. Total energy = 252.8 kcal/mol (252.2 without restraints) Performing minimization step: 4137. Total energy = 252.8 kcal/mol (252.2 without restraints) Performing minimization step: 4138. Total energy = 252.8 kcal/mol (252.2 without restraints) Performing minimization step: 4139. Total energy = 252.8 kcal/mol (252.2 without restraints) Performing minimization step: 4140. Total energy = 252.8 kcal/mol (252.2 without restraints) Performing minimization step: 4141. Total energy = 252.8 kcal/mol (252.2 without restraints) Performing minimization step: 4142. Total energy = 252.8 kcal/mol (252.2 without restraints) Performing minimization step: 4143. Total energy = 252.8 kcal/mol (252.2 without restraints) Performing minimization step: 4144. Total energy = 252.8 kcal/mol (252.2 without restraints) Performing minimization step: 4145. Total energy = 252.8 kcal/mol (252.2 without restraints) Performing minimization step: 4146. Total energy = 252.7 kcal/mol (252.1 without restraints) Performing minimization step: 4147. Total energy = 252.7 kcal/mol (252.1 without restraints) Performing minimization step: 4148. Total energy = 252.7 kcal/mol (252.1 without restraints) Performing minimization step: 4149. Total energy = 252.7 kcal/mol (252.1 without restraints) Performing minimization step: 4150. Total energy = 252.7 kcal/mol (252.1 without restraints) Performing minimization step: 4151. Total energy = 252.7 kcal/mol (252.1 without restraints) Performing minimization step: 4152. Total energy = 252.7 kcal/mol (252.1 without restraints) Performing minimization step: 4153. Total energy = 252.7 kcal/mol (252.1 without restraints) Performing minimization step: 4154. Total energy = 252.7 kcal/mol (252.1 without restraints) Performing minimization step: 4155. Total energy = 252.7 kcal/mol (252.1 without restraints) Performing minimization step: 4156. Total energy = 252.7 kcal/mol (252.1 without restraints) Performing minimization step: 4157. Total energy = 252.7 kcal/mol (252.1 without restraints) Performing minimization step: 4158. Total energy = 252.7 kcal/mol (252 without restraints) Performing minimization step: 4159. Total energy = 252.6 kcal/mol (252 without restraints) Performing minimization step: 4160. Total energy = 252.6 kcal/mol (252 without restraints) Performing minimization step: 4161. Total energy = 252.6 kcal/mol (252 without restraints) Performing minimization step: 4162. Total energy = 252.6 kcal/mol (252 without restraints) Performing minimization step: 4163. Total energy = 252.6 kcal/mol (252 without restraints) Performing minimization step: 4164. Total energy = 252.6 kcal/mol (252 without restraints) Performing minimization step: 4165. Total energy = 252.6 kcal/mol (252 without restraints) Performing minimization step: 4166. Total energy = 252.6 kcal/mol (252 without restraints) Performing minimization step: 4167. Total energy = 252.6 kcal/mol (252 without restraints) Performing minimization step: 4168. Total energy = 252.6 kcal/mol (252 without restraints) Performing minimization step: 4169. Total energy = 252.6 kcal/mol (252 without restraints) Performing minimization step: 4170. Total energy = 252.6 kcal/mol (252 without restraints) Performing minimization step: 4171. Total energy = 252.6 kcal/mol (251.9 without restraints) Performing minimization step: 4172. Total energy = 252.5 kcal/mol (251.9 without restraints) Performing minimization step: 4173. Total energy = 252.5 kcal/mol (251.9 without restraints) Performing minimization step: 4174. Total energy = 252.5 kcal/mol (251.9 without restraints) Performing minimization step: 4175. Total energy = 252.5 kcal/mol (251.9 without restraints) Performing minimization step: 4176. Total energy = 252.5 kcal/mol (251.9 without restraints) Performing minimization step: 4177. Total energy = 252.5 kcal/mol (251.9 without restraints) Performing minimization step: 4178. Total energy = 252.5 kcal/mol (251.9 without restraints) Performing minimization step: 4179. Total energy = 252.5 kcal/mol (251.9 without restraints) Performing minimization step: 4180. Total energy = 252.5 kcal/mol (251.9 without restraints) Performing minimization step: 4181. Total energy = 252.5 kcal/mol (251.9 without restraints) Performing minimization step: 4182. Total energy = 252.5 kcal/mol (251.9 without restraints) Performing minimization step: 4183. Total energy = 252.5 kcal/mol (251.9 without restraints) Performing minimization step: 4184. Total energy = 252.4 kcal/mol (251.8 without restraints) Performing minimization step: 4185. Total energy = 252.4 kcal/mol (251.8 without restraints) Performing minimization step: 4186. Total energy = 252.4 kcal/mol (251.8 without restraints) Performing minimization step: 4187. Total energy = 252.4 kcal/mol (251.8 without restraints) Performing minimization step: 4188. Total energy = 252.4 kcal/mol (251.8 without restraints) Performing minimization step: 4189. Total energy = 252.4 kcal/mol (251.8 without restraints) Performing minimization step: 4190. Total energy = 252.4 kcal/mol (251.8 without restraints) Performing minimization step: 4191. Total energy = 252.4 kcal/mol (251.8 without restraints) Performing minimization step: 4192. Total energy = 252.4 kcal/mol (251.8 without restraints) Performing minimization step: 4193. Total energy = 252.4 kcal/mol (251.8 without restraints) Performing minimization step: 4194. Total energy = 252.4 kcal/mol (251.8 without restraints) Performing minimization step: 4195. Total energy = 252.4 kcal/mol (251.8 without restraints) Performing minimization step: 4196. Total energy = 252.4 kcal/mol (251.7 without restraints) Performing minimization step: 4197. Total energy = 252.4 kcal/mol (251.7 without restraints) Performing minimization step: 4198. Total energy = 252.3 kcal/mol (251.7 without restraints) Performing minimization step: 4199. Total energy = 252.3 kcal/mol (251.7 without restraints) Performing minimization step: 4200. Total energy = 252.3 kcal/mol (251.7 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 252.3 kcal/mol (251.7 without restraints) Performing minimization step: 4202. Total energy = 252.3 kcal/mol (251.7 without restraints) Performing minimization step: 4203. Total energy = 252.3 kcal/mol (251.7 without restraints) Performing minimization step: 4204. Total energy = 252.3 kcal/mol (251.7 without restraints) Performing minimization step: 4205. Total energy = 252.3 kcal/mol (251.7 without restraints) Performing minimization step: 4206. Total energy = 252.3 kcal/mol (251.7 without restraints) Performing minimization step: 4207. Total energy = 252.3 kcal/mol (251.7 without restraints) Performing minimization step: 4208. Total energy = 252.3 kcal/mol (251.7 without restraints) Performing minimization step: 4209. Total energy = 252.3 kcal/mol (251.6 without restraints) Performing minimization step: 4210. Total energy = 252.2 kcal/mol (251.6 without restraints) Performing minimization step: 4211. Total energy = 252.2 kcal/mol (251.6 without restraints) Performing minimization step: 4212. Total energy = 252.2 kcal/mol (251.6 without restraints) Performing minimization step: 4213. Total energy = 252.2 kcal/mol (251.6 without restraints) Performing minimization step: 4214. Total energy = 252.2 kcal/mol (251.6 without restraints) Performing minimization step: 4215. Total energy = 252.2 kcal/mol (251.6 without restraints) Performing minimization step: 4216. Total energy = 252.2 kcal/mol (251.6 without restraints) Performing minimization step: 4217. Total energy = 252.2 kcal/mol (251.6 without restraints) Performing minimization step: 4218. Total energy = 252.2 kcal/mol (251.6 without restraints) Performing minimization step: 4219. Total energy = 252.2 kcal/mol (251.6 without restraints) Performing minimization step: 4220. Total energy = 252.2 kcal/mol (251.6 without restraints) Performing minimization step: 4221. Total energy = 252.2 kcal/mol (251.6 without restraints) Performing minimization step: 4222. Total energy = 252.2 kcal/mol (251.5 without restraints) Performing minimization step: 4223. Total energy = 252.2 kcal/mol (251.5 without restraints) Performing minimization step: 4224. Total energy = 252.1 kcal/mol (251.5 without restraints) Performing minimization step: 4225. Total energy = 252.1 kcal/mol (251.5 without restraints) Performing minimization step: 4226. Total energy = 252.1 kcal/mol (251.5 without restraints) Performing minimization step: 4227. Total energy = 252.1 kcal/mol (251.5 without restraints) Performing minimization step: 4228. Total energy = 252.1 kcal/mol (251.5 without restraints) Performing minimization step: 4229. Total energy = 252.1 kcal/mol (251.5 without restraints) Performing minimization step: 4230. Total energy = 252.1 kcal/mol (251.5 without restraints) Performing minimization step: 4231. Total energy = 252.1 kcal/mol (251.5 without restraints) Performing minimization step: 4232. Total energy = 252.1 kcal/mol (251.5 without restraints) Performing minimization step: 4233. Total energy = 252.1 kcal/mol (251.5 without restraints) Performing minimization step: 4234. Total energy = 252.1 kcal/mol (251.5 without restraints) Performing minimization step: 4235. Total energy = 252.1 kcal/mol (251.4 without restraints) Performing minimization step: 4236. Total energy = 252.1 kcal/mol (251.4 without restraints) Performing minimization step: 4237. Total energy = 252 kcal/mol (251.4 without restraints) Performing minimization step: 4238. Total energy = 252 kcal/mol (251.4 without restraints) Performing minimization step: 4239. Total energy = 252 kcal/mol (251.4 without restraints) Performing minimization step: 4240. Total energy = 252 kcal/mol (251.4 without restraints) Performing minimization step: 4241. Total energy = 252 kcal/mol (251.4 without restraints) Performing minimization step: 4242. Total energy = 252 kcal/mol (251.4 without restraints) Performing minimization step: 4243. Total energy = 252 kcal/mol (251.4 without restraints) Performing minimization step: 4244. Total energy = 252 kcal/mol (251.4 without restraints) Performing minimization step: 4245. Total energy = 252 kcal/mol (251.4 without restraints) Performing minimization step: 4246. Total energy = 252 kcal/mol (251.4 without restraints) Performing minimization step: 4247. Total energy = 252 kcal/mol (251.4 without restraints) Performing minimization step: 4248. Total energy = 252 kcal/mol (251.3 without restraints) Performing minimization step: 4249. Total energy = 252 kcal/mol (251.3 without restraints) Performing minimization step: 4250. Total energy = 251.9 kcal/mol (251.3 without restraints) Performing minimization step: 4251. Total energy = 251.9 kcal/mol (251.3 without restraints) Performing minimization step: 4252. Total energy = 251.9 kcal/mol (251.3 without restraints) Performing minimization step: 4253. Total energy = 251.9 kcal/mol (251.3 without restraints) Performing minimization step: 4254. Total energy = 251.9 kcal/mol (251.3 without restraints) Performing minimization step: 4255. Total energy = 251.9 kcal/mol (251.3 without restraints) Performing minimization step: 4256. Total energy = 251.9 kcal/mol (251.3 without restraints) Performing minimization step: 4257. Total energy = 251.9 kcal/mol (251.3 without restraints) Performing minimization step: 4258. Total energy = 251.9 kcal/mol (251.3 without restraints) Performing minimization step: 4259. Total energy = 251.9 kcal/mol (251.3 without restraints) Performing minimization step: 4260. Total energy = 251.9 kcal/mol (251.3 without restraints) Performing minimization step: 4261. Total energy = 251.9 kcal/mol (251.3 without restraints) Performing minimization step: 4262. Total energy = 251.9 kcal/mol (251.2 without restraints) Performing minimization step: 4263. Total energy = 251.9 kcal/mol (251.2 without restraints) Performing minimization step: 4264. Total energy = 251.8 kcal/mol (251.2 without restraints) Performing minimization step: 4265. Total energy = 251.8 kcal/mol (251.2 without restraints) Performing minimization step: 4266. Total energy = 251.8 kcal/mol (251.2 without restraints) Performing minimization step: 4267. Total energy = 251.8 kcal/mol (251.2 without restraints) Performing minimization step: 4268. Total energy = 251.8 kcal/mol (251.2 without restraints) Performing minimization step: 4269. Total energy = 251.8 kcal/mol (251.2 without restraints) Performing minimization step: 4270. Total energy = 251.8 kcal/mol (251.2 without restraints) Performing minimization step: 4271. Total energy = 251.8 kcal/mol (251.2 without restraints) Performing minimization step: 4272. Total energy = 251.8 kcal/mol (251.2 without restraints) Performing minimization step: 4273. Total energy = 251.8 kcal/mol (251.2 without restraints) Performing minimization step: 4274. Total energy = 251.8 kcal/mol (251.2 without restraints) Performing minimization step: 4275. Total energy = 251.8 kcal/mol (251.1 without restraints) Performing minimization step: 4276. Total energy = 251.8 kcal/mol (251.1 without restraints) Performing minimization step: 4277. Total energy = 251.8 kcal/mol (251.1 without restraints) Performing minimization step: 4278. Total energy = 251.7 kcal/mol (251.1 without restraints) Performing minimization step: 4279. Total energy = 251.7 kcal/mol (251.1 without restraints) Performing minimization step: 4280. Total energy = 251.7 kcal/mol (251.1 without restraints) Performing minimization step: 4281. Total energy = 251.7 kcal/mol (251.1 without restraints) Performing minimization step: 4282. Total energy = 251.7 kcal/mol (251.1 without restraints) Performing minimization step: 4283. Total energy = 251.7 kcal/mol (251.1 without restraints) Performing minimization step: 4284. Total energy = 251.7 kcal/mol (251.1 without restraints) Performing minimization step: 4285. Total energy = 251.7 kcal/mol (251.1 without restraints) Performing minimization step: 4286. Total energy = 251.7 kcal/mol (251.1 without restraints) Performing minimization step: 4287. Total energy = 251.7 kcal/mol (251.1 without restraints) Performing minimization step: 4288. Total energy = 251.7 kcal/mol (251.1 without restraints) Performing minimization step: 4289. Total energy = 251.7 kcal/mol (251 without restraints) Performing minimization step: 4290. Total energy = 251.7 kcal/mol (251 without restraints) Performing minimization step: 4291. Total energy = 251.7 kcal/mol (251 without restraints) Performing minimization step: 4292. Total energy = 251.6 kcal/mol (251 without restraints) Performing minimization step: 4293. Total energy = 251.6 kcal/mol (251 without restraints) Performing minimization step: 4294. Total energy = 251.6 kcal/mol (251 without restraints) Performing minimization step: 4295. Total energy = 251.6 kcal/mol (251 without restraints) Performing minimization step: 4296. Total energy = 251.6 kcal/mol (251 without restraints) Performing minimization step: 4297. Total energy = 251.6 kcal/mol (251 without restraints) Performing minimization step: 4298. Total energy = 251.6 kcal/mol (251 without restraints) Performing minimization step: 4299. Total energy = 251.6 kcal/mol (251 without restraints) Performing minimization step: 4300. Total energy = 251.6 kcal/mol (251 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 251.6 kcal/mol (251 without restraints) Performing minimization step: 4302. Total energy = 251.6 kcal/mol (250.9 without restraints) Performing minimization step: 4303. Total energy = 251.6 kcal/mol (250.9 without restraints) Performing minimization step: 4304. Total energy = 251.6 kcal/mol (250.9 without restraints) Performing minimization step: 4305. Total energy = 251.5 kcal/mol (250.9 without restraints) Performing minimization step: 4306. Total energy = 251.5 kcal/mol (250.9 without restraints) Performing minimization step: 4307. Total energy = 251.5 kcal/mol (250.9 without restraints) Performing minimization step: 4308. Total energy = 251.5 kcal/mol (250.9 without restraints) Performing minimization step: 4309. Total energy = 251.5 kcal/mol (250.9 without restraints) Performing minimization step: 4310. Total energy = 251.5 kcal/mol (250.9 without restraints) Performing minimization step: 4311. Total energy = 251.5 kcal/mol (250.9 without restraints) Performing minimization step: 4312. Total energy = 251.5 kcal/mol (250.9 without restraints) Performing minimization step: 4313. Total energy = 251.5 kcal/mol (250.9 without restraints) Performing minimization step: 4314. Total energy = 251.5 kcal/mol (250.9 without restraints) Performing minimization step: 4315. Total energy = 251.5 kcal/mol (250.9 without restraints) Performing minimization step: 4316. Total energy = 251.5 kcal/mol (250.8 without restraints) Performing minimization step: 4317. Total energy = 251.5 kcal/mol (250.8 without restraints) Performing minimization step: 4318. Total energy = 251.5 kcal/mol (250.8 without restraints) Performing minimization step: 4319. Total energy = 251.4 kcal/mol (250.8 without restraints) Performing minimization step: 4320. Total energy = 251.4 kcal/mol (250.8 without restraints) Performing minimization step: 4321. Total energy = 251.4 kcal/mol (250.8 without restraints) Performing minimization step: 4322. Total energy = 251.4 kcal/mol (250.8 without restraints) Performing minimization step: 4323. Total energy = 251.4 kcal/mol (250.8 without restraints) Performing minimization step: 4324. Total energy = 251.4 kcal/mol (250.8 without restraints) Performing minimization step: 4325. Total energy = 251.4 kcal/mol (250.8 without restraints) Performing minimization step: 4326. Total energy = 251.4 kcal/mol (250.8 without restraints) Performing minimization step: 4327. Total energy = 251.4 kcal/mol (250.8 without restraints) Performing minimization step: 4328. Total energy = 251.4 kcal/mol (250.8 without restraints) Performing minimization step: 4329. Total energy = 251.4 kcal/mol (250.8 without restraints) Performing minimization step: 4330. Total energy = 251.4 kcal/mol (250.7 without restraints) Performing minimization step: 4331. Total energy = 251.4 kcal/mol (250.7 without restraints) Performing minimization step: 4332. Total energy = 251.4 kcal/mol (250.7 without restraints) Performing minimization step: 4333. Total energy = 251.4 kcal/mol (250.7 without restraints) Performing minimization step: 4334. Total energy = 251.3 kcal/mol (250.7 without restraints) Performing minimization step: 4335. Total energy = 251.3 kcal/mol (250.7 without restraints) Performing minimization step: 4336. Total energy = 251.3 kcal/mol (250.7 without restraints) Performing minimization step: 4337. Total energy = 251.3 kcal/mol (250.7 without restraints) Performing minimization step: 4338. Total energy = 251.3 kcal/mol (250.7 without restraints) Performing minimization step: 4339. Total energy = 251.3 kcal/mol (250.7 without restraints) Performing minimization step: 4340. Total energy = 251.3 kcal/mol (250.7 without restraints) Performing minimization step: 4341. Total energy = 251.3 kcal/mol (250.7 without restraints) Performing minimization step: 4342. Total energy = 251.3 kcal/mol (250.7 without restraints) Performing minimization step: 4343. Total energy = 251.3 kcal/mol (250.7 without restraints) Performing minimization step: 4344. Total energy = 251.3 kcal/mol (250.6 without restraints) Performing minimization step: 4345. Total energy = 251.3 kcal/mol (250.6 without restraints) Performing minimization step: 4346. Total energy = 251.3 kcal/mol (250.6 without restraints) Performing minimization step: 4347. Total energy = 251.3 kcal/mol (250.6 without restraints) Performing minimization step: 4348. Total energy = 251.2 kcal/mol (250.6 without restraints) Performing minimization step: 4349. Total energy = 251.2 kcal/mol (250.6 without restraints) Performing minimization step: 4350. Total energy = 251.2 kcal/mol (250.6 without restraints) Performing minimization step: 4351. Total energy = 251.2 kcal/mol (250.6 without restraints) Performing minimization step: 4352. Total energy = 251.2 kcal/mol (250.6 without restraints) Performing minimization step: 4353. Total energy = 251.2 kcal/mol (250.6 without restraints) Performing minimization step: 4354. Total energy = 251.2 kcal/mol (250.6 without restraints) Performing minimization step: 4355. Total energy = 251.2 kcal/mol (250.6 without restraints) Performing minimization step: 4356. Total energy = 251.2 kcal/mol (250.6 without restraints) Performing minimization step: 4357. Total energy = 251.2 kcal/mol (250.6 without restraints) Performing minimization step: 4358. Total energy = 251.2 kcal/mol (250.5 without restraints) Performing minimization step: 4359. Total energy = 251.2 kcal/mol (250.5 without restraints) Performing minimization step: 4360. Total energy = 251.2 kcal/mol (250.5 without restraints) Performing minimization step: 4361. Total energy = 251.2 kcal/mol (250.5 without restraints) Performing minimization step: 4362. Total energy = 251.1 kcal/mol (250.5 without restraints) Performing minimization step: 4363. Total energy = 251.1 kcal/mol (250.5 without restraints) Performing minimization step: 4364. Total energy = 251.1 kcal/mol (250.5 without restraints) Performing minimization step: 4365. Total energy = 251.1 kcal/mol (250.5 without restraints) Performing minimization step: 4366. Total energy = 251.1 kcal/mol (250.5 without restraints) Performing minimization step: 4367. Total energy = 251.1 kcal/mol (250.5 without restraints) Performing minimization step: 4368. Total energy = 251.1 kcal/mol (250.5 without restraints) Performing minimization step: 4369. Total energy = 251.1 kcal/mol (250.5 without restraints) Performing minimization step: 4370. Total energy = 251.1 kcal/mol (250.5 without restraints) Performing minimization step: 4371. Total energy = 251.1 kcal/mol (250.5 without restraints) Performing minimization step: 4372. Total energy = 251.1 kcal/mol (250.5 without restraints) Performing minimization step: 4373. Total energy = 251.1 kcal/mol (250.4 without restraints) Performing minimization step: 4374. Total energy = 251.1 kcal/mol (250.4 without restraints) Performing minimization step: 4375. Total energy = 251.1 kcal/mol (250.4 without restraints) Performing minimization step: 4376. Total energy = 251.1 kcal/mol (250.4 without restraints) Performing minimization step: 4377. Total energy = 251 kcal/mol (250.4 without restraints) Performing minimization step: 4378. Total energy = 251 kcal/mol (250.4 without restraints) Performing minimization step: 4379. Total energy = 251 kcal/mol (250.4 without restraints) Performing minimization step: 4380. Total energy = 251 kcal/mol (250.4 without restraints) Performing minimization step: 4381. Total energy = 251 kcal/mol (250.4 without restraints) Performing minimization step: 4382. Total energy = 251 kcal/mol (250.4 without restraints) Performing minimization step: 4383. Total energy = 251 kcal/mol (250.4 without restraints) Performing minimization step: 4384. Total energy = 251 kcal/mol (250.4 without restraints) Performing minimization step: 4385. Total energy = 251 kcal/mol (250.4 without restraints) Performing minimization step: 4386. Total energy = 251 kcal/mol (250.4 without restraints) Performing minimization step: 4387. Total energy = 251 kcal/mol (250.3 without restraints) Performing minimization step: 4388. Total energy = 251 kcal/mol (250.3 without restraints) Performing minimization step: 4389. Total energy = 251 kcal/mol (250.3 without restraints) Performing minimization step: 4390. Total energy = 251 kcal/mol (250.3 without restraints) Performing minimization step: 4391. Total energy = 250.9 kcal/mol (250.3 without restraints) Performing minimization step: 4392. Total energy = 250.9 kcal/mol (250.3 without restraints) Performing minimization step: 4393. Total energy = 250.9 kcal/mol (250.3 without restraints) Performing minimization step: 4394. Total energy = 250.9 kcal/mol (250.3 without restraints) Performing minimization step: 4395. Total energy = 250.9 kcal/mol (250.3 without restraints) Performing minimization step: 4396. Total energy = 250.9 kcal/mol (250.3 without restraints) Performing minimization step: 4397. Total energy = 250.9 kcal/mol (250.3 without restraints) Performing minimization step: 4398. Total energy = 250.9 kcal/mol (250.3 without restraints) Performing minimization step: 4399. Total energy = 250.9 kcal/mol (250.3 without restraints) Performing minimization step: 4400. Total energy = 250.9 kcal/mol (250.3 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 250.9 kcal/mol (250.3 without restraints) Performing minimization step: 4402. Total energy = 250.9 kcal/mol (250.2 without restraints) Performing minimization step: 4403. Total energy = 250.9 kcal/mol (250.2 without restraints) Performing minimization step: 4404. Total energy = 250.9 kcal/mol (250.2 without restraints) Performing minimization step: 4405. Total energy = 250.9 kcal/mol (250.2 without restraints) Performing minimization step: 4406. Total energy = 250.8 kcal/mol (250.2 without restraints) Performing minimization step: 4407. Total energy = 250.8 kcal/mol (250.2 without restraints) Performing minimization step: 4408. Total energy = 250.8 kcal/mol (250.2 without restraints) Performing minimization step: 4409. Total energy = 250.8 kcal/mol (250.2 without restraints) Performing minimization step: 4410. Total energy = 250.8 kcal/mol (250.2 without restraints) Performing minimization step: 4411. Total energy = 250.8 kcal/mol (250.2 without restraints) Performing minimization step: 4412. Total energy = 250.8 kcal/mol (250.2 without restraints) Performing minimization step: 4413. Total energy = 250.8 kcal/mol (250.2 without restraints) Performing minimization step: 4414. Total energy = 250.8 kcal/mol (250.2 without restraints) Performing minimization step: 4415. Total energy = 250.8 kcal/mol (250.2 without restraints) Performing minimization step: 4416. Total energy = 250.8 kcal/mol (250.1 without restraints) Performing minimization step: 4417. Total energy = 250.8 kcal/mol (250.1 without restraints) Performing minimization step: 4418. Total energy = 250.8 kcal/mol (250.1 without restraints) Performing minimization step: 4419. Total energy = 250.8 kcal/mol (250.1 without restraints) Performing minimization step: 4420. Total energy = 250.8 kcal/mol (250.1 without restraints) Performing minimization step: 4421. Total energy = 250.7 kcal/mol (250.1 without restraints) Performing minimization step: 4422. Total energy = 250.7 kcal/mol (250.1 without restraints) Performing minimization step: 4423. Total energy = 250.7 kcal/mol (250.1 without restraints) Performing minimization step: 4424. Total energy = 250.7 kcal/mol (250.1 without restraints) Performing minimization step: 4425. Total energy = 250.7 kcal/mol (250.1 without restraints) Performing minimization step: 4426. Total energy = 250.7 kcal/mol (250.1 without restraints) Performing minimization step: 4427. Total energy = 250.7 kcal/mol (250.1 without restraints) Performing minimization step: 4428. Total energy = 250.7 kcal/mol (250.1 without restraints) Performing minimization step: 4429. Total energy = 250.7 kcal/mol (250.1 without restraints) Performing minimization step: 4430. Total energy = 250.7 kcal/mol (250.1 without restraints) Performing minimization step: 4431. Total energy = 250.7 kcal/mol (250.1 without restraints) Performing minimization step: 4432. Total energy = 250.7 kcal/mol (250 without restraints) Performing minimization step: 4433. Total energy = 250.7 kcal/mol (250 without restraints) Performing minimization step: 4434. Total energy = 250.7 kcal/mol (250 without restraints) Performing minimization step: 4435. Total energy = 250.7 kcal/mol (250 without restraints) Performing minimization step: 4436. Total energy = 250.6 kcal/mol (250 without restraints) Performing minimization step: 4437. Total energy = 250.6 kcal/mol (250 without restraints) Performing minimization step: 4438. Total energy = 250.6 kcal/mol (250 without restraints) Performing minimization step: 4439. Total energy = 250.6 kcal/mol (250 without restraints) Performing minimization step: 4440. Total energy = 250.6 kcal/mol (250 without restraints) Performing minimization step: 4441. Total energy = 250.6 kcal/mol (250 without restraints) Performing minimization step: 4442. Total energy = 250.6 kcal/mol (250 without restraints) Performing minimization step: 4443. Total energy = 250.6 kcal/mol (250 without restraints) Performing minimization step: 4444. Total energy = 250.6 kcal/mol (250 without restraints) Performing minimization step: 4445. Total energy = 250.6 kcal/mol (250 without restraints) Performing minimization step: 4446. Total energy = 250.6 kcal/mol (249.9 without restraints) Performing minimization step: 4447. Total energy = 250.6 kcal/mol (249.9 without restraints) Performing minimization step: 4448. Total energy = 250.6 kcal/mol (249.9 without restraints) Performing minimization step: 4449. Total energy = 250.6 kcal/mol (249.9 without restraints) Performing minimization step: 4450. Total energy = 250.6 kcal/mol (249.9 without restraints) Performing minimization step: 4451. Total energy = 250.6 kcal/mol (249.9 without restraints) Performing minimization step: 4452. Total energy = 250.5 kcal/mol (249.9 without restraints) Performing minimization step: 4453. Total energy = 250.5 kcal/mol (249.9 without restraints) Performing minimization step: 4454. Total energy = 250.5 kcal/mol (249.9 without restraints) Performing minimization step: 4455. Total energy = 250.5 kcal/mol (249.9 without restraints) Performing minimization step: 4456. Total energy = 250.5 kcal/mol (249.9 without restraints) Performing minimization step: 4457. Total energy = 250.5 kcal/mol (249.9 without restraints) Performing minimization step: 4458. Total energy = 250.5 kcal/mol (249.9 without restraints) Performing minimization step: 4459. Total energy = 250.5 kcal/mol (249.9 without restraints) Performing minimization step: 4460. Total energy = 250.5 kcal/mol (249.9 without restraints) Performing minimization step: 4461. Total energy = 250.5 kcal/mol (249.9 without restraints) Performing minimization step: 4462. Total energy = 250.5 kcal/mol (249.8 without restraints) Performing minimization step: 4463. Total energy = 250.5 kcal/mol (249.8 without restraints) Performing minimization step: 4464. Total energy = 250.5 kcal/mol (249.8 without restraints) Performing minimization step: 4465. Total energy = 250.5 kcal/mol (249.8 without restraints) Performing minimization step: 4466. Total energy = 250.5 kcal/mol (249.8 without restraints) Performing minimization step: 4467. Total energy = 250.4 kcal/mol (249.8 without restraints) Performing minimization step: 4468. Total energy = 250.4 kcal/mol (249.8 without restraints) Performing minimization step: 4469. Total energy = 250.4 kcal/mol (249.8 without restraints) Performing minimization step: 4470. Total energy = 250.4 kcal/mol (249.8 without restraints) Performing minimization step: 4471. Total energy = 250.4 kcal/mol (249.8 without restraints) Performing minimization step: 4472. Total energy = 250.4 kcal/mol (249.8 without restraints) Performing minimization step: 4473. Total energy = 250.4 kcal/mol (249.8 without restraints) Performing minimization step: 4474. Total energy = 250.4 kcal/mol (249.8 without restraints) Performing minimization step: 4475. Total energy = 250.4 kcal/mol (249.8 without restraints) Performing minimization step: 4476. Total energy = 250.4 kcal/mol (249.8 without restraints) Performing minimization step: 4477. Total energy = 250.4 kcal/mol (249.7 without restraints) Performing minimization step: 4478. Total energy = 250.4 kcal/mol (249.7 without restraints) Performing minimization step: 4479. Total energy = 250.4 kcal/mol (249.7 without restraints) Performing minimization step: 4480. Total energy = 250.4 kcal/mol (249.7 without restraints) Performing minimization step: 4481. Total energy = 250.4 kcal/mol (249.7 without restraints) Performing minimization step: 4482. Total energy = 250.3 kcal/mol (249.7 without restraints) Performing minimization step: 4483. Total energy = 250.3 kcal/mol (249.7 without restraints) Performing minimization step: 4484. Total energy = 250.3 kcal/mol (249.7 without restraints) Performing minimization step: 4485. Total energy = 250.3 kcal/mol (249.7 without restraints) Performing minimization step: 4486. Total energy = 250.3 kcal/mol (249.7 without restraints) Performing minimization step: 4487. Total energy = 250.3 kcal/mol (249.7 without restraints) Performing minimization step: 4488. Total energy = 250.3 kcal/mol (249.7 without restraints) Performing minimization step: 4489. Total energy = 250.3 kcal/mol (249.7 without restraints) Performing minimization step: 4490. Total energy = 250.3 kcal/mol (249.7 without restraints) Performing minimization step: 4491. Total energy = 250.3 kcal/mol (249.7 without restraints) Performing minimization step: 4492. Total energy = 250.3 kcal/mol (249.6 without restraints) Performing minimization step: 4493. Total energy = 250.3 kcal/mol (249.6 without restraints) Performing minimization step: 4494. Total energy = 250.3 kcal/mol (249.6 without restraints) Performing minimization step: 4495. Total energy = 250.3 kcal/mol (249.6 without restraints) Performing minimization step: 4496. Total energy = 250.3 kcal/mol (249.6 without restraints) Performing minimization step: 4497. Total energy = 250.3 kcal/mol (249.6 without restraints) Performing minimization step: 4498. Total energy = 250.2 kcal/mol (249.6 without restraints) Performing minimization step: 4499. Total energy = 250.2 kcal/mol (249.6 without restraints) Performing minimization step: 4500. Total energy = 250.2 kcal/mol (249.6 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 250.2 kcal/mol (249.6 without restraints) Performing minimization step: 4502. Total energy = 250.2 kcal/mol (249.6 without restraints) Performing minimization step: 4503. Total energy = 250.2 kcal/mol (249.6 without restraints) Performing minimization step: 4504. Total energy = 250.2 kcal/mol (249.6 without restraints) Performing minimization step: 4505. Total energy = 250.2 kcal/mol (249.6 without restraints) Performing minimization step: 4506. Total energy = 250.2 kcal/mol (249.6 without restraints) Performing minimization step: 4507. Total energy = 250.2 kcal/mol (249.6 without restraints) Performing minimization step: 4508. Total energy = 250.2 kcal/mol (249.5 without restraints) Performing minimization step: 4509. Total energy = 250.2 kcal/mol (249.5 without restraints) Performing minimization step: 4510. Total energy = 250.2 kcal/mol (249.5 without restraints) Performing minimization step: 4511. Total energy = 250.2 kcal/mol (249.5 without restraints) Performing minimization step: 4512. Total energy = 250.2 kcal/mol (249.5 without restraints) Performing minimization step: 4513. Total energy = 250.2 kcal/mol (249.5 without restraints) Performing minimization step: 4514. Total energy = 250.1 kcal/mol (249.5 without restraints) Performing minimization step: 4515. Total energy = 250.1 kcal/mol (249.5 without restraints) Performing minimization step: 4516. Total energy = 250.1 kcal/mol (249.5 without restraints) Performing minimization step: 4517. Total energy = 250.1 kcal/mol (249.5 without restraints) Performing minimization step: 4518. Total energy = 250.1 kcal/mol (249.5 without restraints) Performing minimization step: 4519. Total energy = 250.1 kcal/mol (249.5 without restraints) Performing minimization step: 4520. Total energy = 250.1 kcal/mol (249.5 without restraints) Performing minimization step: 4521. Total energy = 250.1 kcal/mol (249.5 without restraints) Performing minimization step: 4522. Total energy = 250.1 kcal/mol (249.5 without restraints) Performing minimization step: 4523. Total energy = 250.1 kcal/mol (249.5 without restraints) Performing minimization step: 4524. Total energy = 250.1 kcal/mol (249.4 without restraints) Performing minimization step: 4525. Total energy = 250.1 kcal/mol (249.4 without restraints) Performing minimization step: 4526. Total energy = 250.1 kcal/mol (249.4 without restraints) Performing minimization step: 4527. Total energy = 250.1 kcal/mol (249.4 without restraints) Performing minimization step: 4528. Total energy = 250.1 kcal/mol (249.4 without restraints) Performing minimization step: 4529. Total energy = 250.1 kcal/mol (249.4 without restraints) Performing minimization step: 4530. Total energy = 250 kcal/mol (249.4 without restraints) Performing minimization step: 4531. Total energy = 250 kcal/mol (249.4 without restraints) Performing minimization step: 4532. Total energy = 250 kcal/mol (249.4 without restraints) Performing minimization step: 4533. Total energy = 250 kcal/mol (249.4 without restraints) Performing minimization step: 4534. Total energy = 250 kcal/mol (249.4 without restraints) Performing minimization step: 4535. Total energy = 250 kcal/mol (249.4 without restraints) Performing minimization step: 4536. Total energy = 250 kcal/mol (249.4 without restraints) Performing minimization step: 4537. Total energy = 250 kcal/mol (249.4 without restraints) Performing minimization step: 4538. Total energy = 250 kcal/mol (249.4 without restraints) Performing minimization step: 4539. Total energy = 250 kcal/mol (249.3 without restraints) Performing minimization step: 4540. Total energy = 250 kcal/mol (249.3 without restraints) Performing minimization step: 4541. Total energy = 250 kcal/mol (249.3 without restraints) Performing minimization step: 4542. Total energy = 250 kcal/mol (249.3 without restraints) Performing minimization step: 4543. Total energy = 250 kcal/mol (249.3 without restraints) Performing minimization step: 4544. Total energy = 250 kcal/mol (249.3 without restraints) Performing minimization step: 4545. Total energy = 250 kcal/mol (249.3 without restraints) Performing minimization step: 4546. Total energy = 249.9 kcal/mol (249.3 without restraints) Performing minimization step: 4547. Total energy = 249.9 kcal/mol (249.3 without restraints) Performing minimization step: 4548. Total energy = 249.9 kcal/mol (249.3 without restraints) Performing minimization step: 4549. Total energy = 249.9 kcal/mol (249.3 without restraints) Performing minimization step: 4550. Total energy = 249.9 kcal/mol (249.3 without restraints) Performing minimization step: 4551. Total energy = 249.9 kcal/mol (249.3 without restraints) Performing minimization step: 4552. Total energy = 249.9 kcal/mol (249.3 without restraints) Performing minimization step: 4553. Total energy = 249.9 kcal/mol (249.3 without restraints) Performing minimization step: 4554. Total energy = 249.9 kcal/mol (249.3 without restraints) Performing minimization step: 4555. Total energy = 249.9 kcal/mol (249.2 without restraints) Performing minimization step: 4556. Total energy = 249.9 kcal/mol (249.2 without restraints) Performing minimization step: 4557. Total energy = 249.9 kcal/mol (249.2 without restraints) Performing minimization step: 4558. Total energy = 249.9 kcal/mol (249.2 without restraints) Performing minimization step: 4559. Total energy = 249.9 kcal/mol (249.2 without restraints) Performing minimization step: 4560. Total energy = 249.9 kcal/mol (249.2 without restraints) Performing minimization step: 4561. Total energy = 249.9 kcal/mol (249.2 without restraints) Performing minimization step: 4562. Total energy = 249.8 kcal/mol (249.2 without restraints) Performing minimization step: 4563. Total energy = 249.8 kcal/mol (249.2 without restraints) Performing minimization step: 4564. Total energy = 249.8 kcal/mol (249.2 without restraints) Performing minimization step: 4565. Total energy = 249.8 kcal/mol (249.2 without restraints) Performing minimization step: 4566. Total energy = 249.8 kcal/mol (249.2 without restraints) Performing minimization step: 4567. Total energy = 249.8 kcal/mol (249.2 without restraints) Performing minimization step: 4568. Total energy = 249.8 kcal/mol (249.2 without restraints) Performing minimization step: 4569. Total energy = 249.8 kcal/mol (249.2 without restraints) Performing minimization step: 4570. Total energy = 249.8 kcal/mol (249.2 without restraints) Performing minimization step: 4571. Total energy = 249.8 kcal/mol (249.1 without restraints) Performing minimization step: 4572. Total energy = 249.8 kcal/mol (249.1 without restraints) Performing minimization step: 4573. Total energy = 249.8 kcal/mol (249.1 without restraints) Performing minimization step: 4574. Total energy = 249.8 kcal/mol (249.1 without restraints) Performing minimization step: 4575. Total energy = 249.8 kcal/mol (249.1 without restraints) Performing minimization step: 4576. Total energy = 249.8 kcal/mol (249.1 without restraints) Performing minimization step: 4577. Total energy = 249.8 kcal/mol (249.1 without restraints) Performing minimization step: 4578. Total energy = 249.7 kcal/mol (249.1 without restraints) Performing minimization step: 4579. Total energy = 249.7 kcal/mol (249.1 without restraints) Performing minimization step: 4580. Total energy = 249.7 kcal/mol (249.1 without restraints) Performing minimization step: 4581. Total energy = 249.7 kcal/mol (249.1 without restraints) Performing minimization step: 4582. Total energy = 249.7 kcal/mol (249.1 without restraints) Performing minimization step: 4583. Total energy = 249.7 kcal/mol (249.1 without restraints) Performing minimization step: 4584. Total energy = 249.7 kcal/mol (249.1 without restraints) Performing minimization step: 4585. Total energy = 249.7 kcal/mol (249.1 without restraints) Performing minimization step: 4586. Total energy = 249.7 kcal/mol (249.1 without restraints) Performing minimization step: 4587. Total energy = 249.7 kcal/mol (249.1 without restraints) Performing minimization step: 4588. Total energy = 249.7 kcal/mol (249 without restraints) Performing minimization step: 4589. Total energy = 249.7 kcal/mol (249 without restraints) Performing minimization step: 4590. Total energy = 249.7 kcal/mol (249 without restraints) Performing minimization step: 4591. Total energy = 249.7 kcal/mol (249 without restraints) Performing minimization step: 4592. Total energy = 249.7 kcal/mol (249 without restraints) Performing minimization step: 4593. Total energy = 249.7 kcal/mol (249 without restraints) Performing minimization step: 4594. Total energy = 249.7 kcal/mol (249 without restraints) Performing minimization step: 4595. Total energy = 249.6 kcal/mol (249 without restraints) Performing minimization step: 4596. Total energy = 249.6 kcal/mol (249 without restraints) Performing minimization step: 4597. Total energy = 249.6 kcal/mol (249 without restraints) Performing minimization step: 4598. Total energy = 249.6 kcal/mol (249 without restraints) Performing minimization step: 4599. Total energy = 249.6 kcal/mol (249 without restraints) Performing minimization step: 4600. Total energy = 249.6 kcal/mol (249 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 249.6 kcal/mol (249 without restraints) Performing minimization step: 4602. Total energy = 249.6 kcal/mol (249 without restraints) Performing minimization step: 4603. Total energy = 249.6 kcal/mol (249 without restraints) Performing minimization step: 4604. Total energy = 249.6 kcal/mol (248.9 without restraints) Performing minimization step: 4605. Total energy = 249.6 kcal/mol (248.9 without restraints) Performing minimization step: 4606. Total energy = 249.6 kcal/mol (248.9 without restraints) Performing minimization step: 4607. Total energy = 249.6 kcal/mol (248.9 without restraints) Performing minimization step: 4608. Total energy = 249.6 kcal/mol (248.9 without restraints) Performing minimization step: 4609. Total energy = 249.6 kcal/mol (248.9 without restraints) Performing minimization step: 4610. Total energy = 249.6 kcal/mol (248.9 without restraints) Performing minimization step: 4611. Total energy = 249.6 kcal/mol (248.9 without restraints) Performing minimization step: 4612. Total energy = 249.5 kcal/mol (248.9 without restraints) Performing minimization step: 4613. Total energy = 249.5 kcal/mol (248.9 without restraints) Performing minimization step: 4614. Total energy = 249.5 kcal/mol (248.9 without restraints) Performing minimization step: 4615. Total energy = 249.5 kcal/mol (248.9 without restraints) Performing minimization step: 4616. Total energy = 249.5 kcal/mol (248.9 without restraints) Performing minimization step: 4617. Total energy = 249.5 kcal/mol (248.9 without restraints) Performing minimization step: 4618. Total energy = 249.5 kcal/mol (248.9 without restraints) Performing minimization step: 4619. Total energy = 249.5 kcal/mol (248.9 without restraints) Performing minimization step: 4620. Total energy = 249.5 kcal/mol (248.8 without restraints) Performing minimization step: 4621. Total energy = 249.5 kcal/mol (248.8 without restraints) Performing minimization step: 4622. Total energy = 249.5 kcal/mol (248.8 without restraints) Performing minimization step: 4623. Total energy = 249.5 kcal/mol (248.8 without restraints) Performing minimization step: 4624. Total energy = 249.5 kcal/mol (248.8 without restraints) Performing minimization step: 4625. Total energy = 249.5 kcal/mol (248.8 without restraints) Performing minimization step: 4626. Total energy = 249.5 kcal/mol (248.8 without restraints) Performing minimization step: 4627. Total energy = 249.5 kcal/mol (248.8 without restraints) Performing minimization step: 4628. Total energy = 249.5 kcal/mol (248.8 without restraints) Performing minimization step: 4629. Total energy = 249.4 kcal/mol (248.8 without restraints) Performing minimization step: 4630. Total energy = 249.4 kcal/mol (248.8 without restraints) Performing minimization step: 4631. Total energy = 249.4 kcal/mol (248.8 without restraints) Performing minimization step: 4632. Total energy = 249.4 kcal/mol (248.8 without restraints) Performing minimization step: 4633. Total energy = 249.4 kcal/mol (248.8 without restraints) Performing minimization step: 4634. Total energy = 249.4 kcal/mol (248.8 without restraints) Performing minimization step: 4635. Total energy = 249.4 kcal/mol (248.8 without restraints) Performing minimization step: 4636. Total energy = 249.4 kcal/mol (248.8 without restraints) Performing minimization step: 4637. Total energy = 249.4 kcal/mol (248.7 without restraints) Performing minimization step: 4638. Total energy = 249.4 kcal/mol (248.7 without restraints) Performing minimization step: 4639. Total energy = 249.4 kcal/mol (248.7 without restraints) Performing minimization step: 4640. Total energy = 249.4 kcal/mol (248.7 without restraints) Performing minimization step: 4641. Total energy = 249.4 kcal/mol (248.7 without restraints) Performing minimization step: 4642. Total energy = 249.4 kcal/mol (248.7 without restraints) Performing minimization step: 4643. Total energy = 249.4 kcal/mol (248.7 without restraints) Performing minimization step: 4644. Total energy = 249.4 kcal/mol (248.7 without restraints) Performing minimization step: 4645. Total energy = 249.4 kcal/mol (248.7 without restraints) Performing minimization step: 4646. Total energy = 249.3 kcal/mol (248.7 without restraints) Performing minimization step: 4647. Total energy = 249.3 kcal/mol (248.7 without restraints) Performing minimization step: 4648. Total energy = 249.3 kcal/mol (248.7 without restraints) Performing minimization step: 4649. Total energy = 249.3 kcal/mol (248.7 without restraints) Performing minimization step: 4650. Total energy = 249.3 kcal/mol (248.7 without restraints) Performing minimization step: 4651. Total energy = 249.3 kcal/mol (248.7 without restraints) Performing minimization step: 4652. Total energy = 249.3 kcal/mol (248.7 without restraints) Performing minimization step: 4653. Total energy = 249.3 kcal/mol (248.7 without restraints) Performing minimization step: 4654. Total energy = 249.3 kcal/mol (248.6 without restraints) Performing minimization step: 4655. Total energy = 249.3 kcal/mol (248.6 without restraints) Performing minimization step: 4656. Total energy = 249.3 kcal/mol (248.6 without restraints) Performing minimization step: 4657. Total energy = 249.3 kcal/mol (248.6 without restraints) Performing minimization step: 4658. Total energy = 249.3 kcal/mol (248.6 without restraints) Performing minimization step: 4659. Total energy = 249.3 kcal/mol (248.6 without restraints) Performing minimization step: 4660. Total energy = 249.3 kcal/mol (248.6 without restraints) Performing minimization step: 4661. Total energy = 249.3 kcal/mol (248.6 without restraints) Performing minimization step: 4662. Total energy = 249.3 kcal/mol (248.6 without restraints) Performing minimization step: 4663. Total energy = 249.2 kcal/mol (248.6 without restraints) Performing minimization step: 4664. Total energy = 249.2 kcal/mol (248.6 without restraints) Performing minimization step: 4665. Total energy = 249.2 kcal/mol (248.6 without restraints) Performing minimization step: 4666. Total energy = 249.2 kcal/mol (248.6 without restraints) Performing minimization step: 4667. Total energy = 249.2 kcal/mol (248.6 without restraints) Performing minimization step: 4668. Total energy = 249.2 kcal/mol (248.6 without restraints) Performing minimization step: 4669. Total energy = 249.2 kcal/mol (248.6 without restraints) Performing minimization step: 4670. Total energy = 249.2 kcal/mol (248.6 without restraints) Performing minimization step: 4671. Total energy = 249.2 kcal/mol (248.5 without restraints) Performing minimization step: 4672. Total energy = 249.2 kcal/mol (248.5 without restraints) Performing minimization step: 4673. Total energy = 249.2 kcal/mol (248.5 without restraints) Performing minimization step: 4674. Total energy = 249.2 kcal/mol (248.5 without restraints) Performing minimization step: 4675. Total energy = 249.2 kcal/mol (248.5 without restraints) Performing minimization step: 4676. Total energy = 249.2 kcal/mol (248.5 without restraints) Performing minimization step: 4677. Total energy = 249.2 kcal/mol (248.5 without restraints) Performing minimization step: 4678. Total energy = 249.2 kcal/mol (248.5 without restraints) Performing minimization step: 4679. Total energy = 249.2 kcal/mol (248.5 without restraints) Performing minimization step: 4680. Total energy = 249.1 kcal/mol (248.5 without restraints) Performing minimization step: 4681. Total energy = 249.1 kcal/mol (248.5 without restraints) Performing minimization step: 4682. Total energy = 249.1 kcal/mol (248.5 without restraints) Performing minimization step: 4683. Total energy = 249.1 kcal/mol (248.5 without restraints) Performing minimization step: 4684. Total energy = 249.1 kcal/mol (248.5 without restraints) Performing minimization step: 4685. Total energy = 249.1 kcal/mol (248.5 without restraints) Performing minimization step: 4686. Total energy = 249.1 kcal/mol (248.5 without restraints) Performing minimization step: 4687. Total energy = 249.1 kcal/mol (248.5 without restraints) Performing minimization step: 4688. Total energy = 249.1 kcal/mol (248.4 without restraints) Performing minimization step: 4689. Total energy = 249.1 kcal/mol (248.4 without restraints) Performing minimization step: 4690. Total energy = 249.1 kcal/mol (248.4 without restraints) Performing minimization step: 4691. Total energy = 249.1 kcal/mol (248.4 without restraints) Performing minimization step: 4692. Total energy = 249.1 kcal/mol (248.4 without restraints) Performing minimization step: 4693. Total energy = 249.1 kcal/mol (248.4 without restraints) Performing minimization step: 4694. Total energy = 249.1 kcal/mol (248.4 without restraints) Performing minimization step: 4695. Total energy = 249.1 kcal/mol (248.4 without restraints) Performing minimization step: 4696. Total energy = 249.1 kcal/mol (248.4 without restraints) Performing minimization step: 4697. Total energy = 249.1 kcal/mol (248.4 without restraints) Performing minimization step: 4698. Total energy = 249 kcal/mol (248.4 without restraints) Performing minimization step: 4699. Total energy = 249 kcal/mol (248.4 without restraints) Performing minimization step: 4700. Total energy = 249 kcal/mol (248.4 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 249 kcal/mol (248.4 without restraints) Performing minimization step: 4702. Total energy = 249 kcal/mol (248.4 without restraints) Performing minimization step: 4703. Total energy = 249 kcal/mol (248.4 without restraints) Performing minimization step: 4704. Total energy = 249 kcal/mol (248.4 without restraints) Performing minimization step: 4705. Total energy = 249 kcal/mol (248.4 without restraints) Performing minimization step: 4706. Total energy = 249 kcal/mol (248.3 without restraints) Performing minimization step: 4707. Total energy = 249 kcal/mol (248.3 without restraints) Performing minimization step: 4708. Total energy = 249 kcal/mol (248.3 without restraints) Performing minimization step: 4709. Total energy = 249 kcal/mol (248.3 without restraints) Performing minimization step: 4710. Total energy = 249 kcal/mol (248.3 without restraints) Performing minimization step: 4711. Total energy = 249 kcal/mol (248.3 without restraints) Performing minimization step: 4712. Total energy = 249 kcal/mol (248.3 without restraints) Performing minimization step: 4713. Total energy = 249 kcal/mol (248.3 without restraints) Performing minimization step: 4714. Total energy = 249 kcal/mol (248.3 without restraints) Performing minimization step: 4715. Total energy = 249 kcal/mol (248.3 without restraints) Performing minimization step: 4716. Total energy = 248.9 kcal/mol (248.3 without restraints) Performing minimization step: 4717. Total energy = 248.9 kcal/mol (248.3 without restraints) Performing minimization step: 4718. Total energy = 248.9 kcal/mol (248.3 without restraints) Performing minimization step: 4719. Total energy = 248.9 kcal/mol (248.3 without restraints) Performing minimization step: 4720. Total energy = 248.9 kcal/mol (248.3 without restraints) Performing minimization step: 4721. Total energy = 248.9 kcal/mol (248.3 without restraints) Performing minimization step: 4722. Total energy = 248.9 kcal/mol (248.3 without restraints) Performing minimization step: 4723. Total energy = 248.9 kcal/mol (248.2 without restraints) Performing minimization step: 4724. Total energy = 248.9 kcal/mol (248.2 without restraints) Performing minimization step: 4725. Total energy = 248.9 kcal/mol (248.2 without restraints) Performing minimization step: 4726. Total energy = 248.9 kcal/mol (248.2 without restraints) Performing minimization step: 4727. Total energy = 248.9 kcal/mol (248.2 without restraints) Performing minimization step: 4728. Total energy = 248.9 kcal/mol (248.2 without restraints) Performing minimization step: 4729. Total energy = 248.9 kcal/mol (248.2 without restraints) Performing minimization step: 4730. Total energy = 248.9 kcal/mol (248.2 without restraints) Performing minimization step: 4731. Total energy = 248.9 kcal/mol (248.2 without restraints) Performing minimization step: 4732. Total energy = 248.9 kcal/mol (248.2 without restraints) Performing minimization step: 4733. Total energy = 248.9 kcal/mol (248.2 without restraints) Performing minimization step: 4734. Total energy = 248.8 kcal/mol (248.2 without restraints) Performing minimization step: 4735. Total energy = 248.8 kcal/mol (248.2 without restraints) Performing minimization step: 4736. Total energy = 248.8 kcal/mol (248.2 without restraints) Performing minimization step: 4737. Total energy = 248.8 kcal/mol (248.2 without restraints) Performing minimization step: 4738. Total energy = 248.8 kcal/mol (248.2 without restraints) Performing minimization step: 4739. Total energy = 248.8 kcal/mol (248.2 without restraints) Performing minimization step: 4740. Total energy = 248.8 kcal/mol (248.1 without restraints) Performing minimization step: 4741. Total energy = 248.8 kcal/mol (248.1 without restraints) Performing minimization step: 4742. Total energy = 248.8 kcal/mol (248.1 without restraints) Performing minimization step: 4743. Total energy = 248.8 kcal/mol (248.1 without restraints) Performing minimization step: 4744. Total energy = 248.8 kcal/mol (248.1 without restraints) Performing minimization step: 4745. Total energy = 248.8 kcal/mol (248.1 without restraints) Performing minimization step: 4746. Total energy = 248.8 kcal/mol (248.1 without restraints) Performing minimization step: 4747. Total energy = 248.8 kcal/mol (248.1 without restraints) Performing minimization step: 4748. Total energy = 248.8 kcal/mol (248.1 without restraints) Performing minimization step: 4749. Total energy = 248.8 kcal/mol (248.1 without restraints) Performing minimization step: 4750. Total energy = 248.8 kcal/mol (248.1 without restraints) Performing minimization step: 4751. Total energy = 248.8 kcal/mol (248.1 without restraints) Performing minimization step: 4752. Total energy = 248.7 kcal/mol (248.1 without restraints) Performing minimization step: 4753. Total energy = 248.7 kcal/mol (248.1 without restraints) Performing minimization step: 4754. Total energy = 248.7 kcal/mol (248.1 without restraints) Performing minimization step: 4755. Total energy = 248.7 kcal/mol (248.1 without restraints) Performing minimization step: 4756. Total energy = 248.7 kcal/mol (248.1 without restraints) Performing minimization step: 4757. Total energy = 248.7 kcal/mol (248.1 without restraints) Performing minimization step: 4758. Total energy = 248.7 kcal/mol (248 without restraints) Performing minimization step: 4759. Total energy = 248.7 kcal/mol (248 without restraints) Performing minimization step: 4760. Total energy = 248.7 kcal/mol (248 without restraints) Performing minimization step: 4761. Total energy = 248.7 kcal/mol (248 without restraints) Performing minimization step: 4762. Total energy = 248.7 kcal/mol (248 without restraints) Performing minimization step: 4763. Total energy = 248.7 kcal/mol (248 without restraints) Performing minimization step: 4764. Total energy = 248.7 kcal/mol (248 without restraints) Performing minimization step: 4765. Total energy = 248.7 kcal/mol (248 without restraints) Performing minimization step: 4766. Total energy = 248.7 kcal/mol (248 without restraints) Performing minimization step: 4767. Total energy = 248.7 kcal/mol (248 without restraints) Performing minimization step: 4768. Total energy = 248.7 kcal/mol (248 without restraints) Performing minimization step: 4769. Total energy = 248.7 kcal/mol (248 without restraints) Performing minimization step: 4770. Total energy = 248.6 kcal/mol (248 without restraints) Performing minimization step: 4771. Total energy = 248.6 kcal/mol (248 without restraints) Performing minimization step: 4772. Total energy = 248.6 kcal/mol (248 without restraints) Performing minimization step: 4773. Total energy = 248.6 kcal/mol (248 without restraints) Performing minimization step: 4774. Total energy = 248.6 kcal/mol (248 without restraints) Performing minimization step: 4775. Total energy = 248.6 kcal/mol (248 without restraints) Performing minimization step: 4776. Total energy = 248.6 kcal/mol (247.9 without restraints) Performing minimization step: 4777. Total energy = 248.6 kcal/mol (247.9 without restraints) Performing minimization step: 4778. Total energy = 248.6 kcal/mol (247.9 without restraints) Performing minimization step: 4779. Total energy = 248.6 kcal/mol (247.9 without restraints) Performing minimization step: 4780. Total energy = 248.6 kcal/mol (247.9 without restraints) Performing minimization step: 4781. Total energy = 248.6 kcal/mol (247.9 without restraints) Performing minimization step: 4782. Total energy = 248.6 kcal/mol (247.9 without restraints) Performing minimization step: 4783. Total energy = 248.6 kcal/mol (247.9 without restraints) Performing minimization step: 4784. Total energy = 248.6 kcal/mol (247.9 without restraints) Performing minimization step: 4785. Total energy = 248.6 kcal/mol (247.9 without restraints) Performing minimization step: 4786. Total energy = 248.6 kcal/mol (247.9 without restraints) Performing minimization step: 4787. Total energy = 248.6 kcal/mol (247.9 without restraints) Performing minimization step: 4788. Total energy = 248.5 kcal/mol (247.9 without restraints) Performing minimization step: 4789. Total energy = 248.5 kcal/mol (247.9 without restraints) Performing minimization step: 4790. Total energy = 248.5 kcal/mol (247.9 without restraints) Performing minimization step: 4791. Total energy = 248.5 kcal/mol (247.9 without restraints) Performing minimization step: 4792. Total energy = 248.5 kcal/mol (247.9 without restraints) Performing minimization step: 4793. Total energy = 248.5 kcal/mol (247.9 without restraints) Performing minimization step: 4794. Total energy = 248.5 kcal/mol (247.8 without restraints) Performing minimization step: 4795. Total energy = 248.5 kcal/mol (247.8 without restraints) Performing minimization step: 4796. Total energy = 248.5 kcal/mol (247.8 without restraints) Performing minimization step: 4797. Total energy = 248.5 kcal/mol (247.8 without restraints) Performing minimization step: 4798. Total energy = 248.5 kcal/mol (247.8 without restraints) Performing minimization step: 4799. Total energy = 248.5 kcal/mol (247.8 without restraints) Performing minimization step: 4800. Total energy = 248.5 kcal/mol (247.8 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 248.5 kcal/mol (247.8 without restraints) Performing minimization step: 4802. Total energy = 248.5 kcal/mol (247.8 without restraints) Performing minimization step: 4803. Total energy = 248.5 kcal/mol (247.8 without restraints) Performing minimization step: 4804. Total energy = 248.5 kcal/mol (247.8 without restraints) Performing minimization step: 4805. Total energy = 248.5 kcal/mol (247.8 without restraints) Performing minimization step: 4806. Total energy = 248.5 kcal/mol (247.8 without restraints) Performing minimization step: 4807. Total energy = 248.4 kcal/mol (247.8 without restraints) Performing minimization step: 4808. Total energy = 248.4 kcal/mol (247.8 without restraints) Performing minimization step: 4809. Total energy = 248.4 kcal/mol (247.8 without restraints) Performing minimization step: 4810. Total energy = 248.4 kcal/mol (247.8 without restraints) Performing minimization step: 4811. Total energy = 248.4 kcal/mol (247.8 without restraints) Performing minimization step: 4812. Total energy = 248.4 kcal/mol (247.8 without restraints) Performing minimization step: 4813. Total energy = 248.4 kcal/mol (247.7 without restraints) Performing minimization step: 4814. Total energy = 248.4 kcal/mol (247.7 without restraints) Performing minimization step: 4815. Total energy = 248.4 kcal/mol (247.7 without restraints) Performing minimization step: 4816. Total energy = 248.4 kcal/mol (247.7 without restraints) Performing minimization step: 4817. Total energy = 248.4 kcal/mol (247.7 without restraints) Performing minimization step: 4818. Total energy = 248.4 kcal/mol (247.7 without restraints) Performing minimization step: 4819. Total energy = 248.4 kcal/mol (247.7 without restraints) Performing minimization step: 4820. Total energy = 248.4 kcal/mol (247.7 without restraints) Performing minimization step: 4821. Total energy = 248.4 kcal/mol (247.7 without restraints) Performing minimization step: 4822. Total energy = 248.4 kcal/mol (247.7 without restraints) Performing minimization step: 4823. Total energy = 248.4 kcal/mol (247.7 without restraints) Performing minimization step: 4824. Total energy = 248.4 kcal/mol (247.7 without restraints) Performing minimization step: 4825. Total energy = 248.4 kcal/mol (247.7 without restraints) Performing minimization step: 4826. Total energy = 248.3 kcal/mol (247.7 without restraints) Performing minimization step: 4827. Total energy = 248.3 kcal/mol (247.7 without restraints) Performing minimization step: 4828. Total energy = 248.3 kcal/mol (247.7 without restraints) Performing minimization step: 4829. Total energy = 248.3 kcal/mol (247.7 without restraints) Performing minimization step: 4830. Total energy = 248.3 kcal/mol (247.7 without restraints) Performing minimization step: 4831. Total energy = 248.3 kcal/mol (247.7 without restraints) Performing minimization step: 4832. Total energy = 248.3 kcal/mol (247.6 without restraints) Performing minimization step: 4833. Total energy = 248.3 kcal/mol (247.6 without restraints) Performing minimization step: 4834. Total energy = 248.3 kcal/mol (247.6 without restraints) Performing minimization step: 4835. Total energy = 248.3 kcal/mol (247.6 without restraints) Performing minimization step: 4836. Total energy = 248.3 kcal/mol (247.6 without restraints) Performing minimization step: 4837. Total energy = 248.3 kcal/mol (247.6 without restraints) Performing minimization step: 4838. Total energy = 248.3 kcal/mol (247.6 without restraints) Performing minimization step: 4839. Total energy = 248.3 kcal/mol (247.6 without restraints) Performing minimization step: 4840. Total energy = 248.3 kcal/mol (247.6 without restraints) Performing minimization step: 4841. Total energy = 248.3 kcal/mol (247.6 without restraints) Performing minimization step: 4842. Total energy = 248.3 kcal/mol (247.6 without restraints) Performing minimization step: 4843. Total energy = 248.3 kcal/mol (247.6 without restraints) Performing minimization step: 4844. Total energy = 248.2 kcal/mol (247.6 without restraints) Performing minimization step: 4845. Total energy = 248.2 kcal/mol (247.6 without restraints) Performing minimization step: 4846. Total energy = 248.2 kcal/mol (247.6 without restraints) Performing minimization step: 4847. Total energy = 248.2 kcal/mol (247.6 without restraints) Performing minimization step: 4848. Total energy = 248.2 kcal/mol (247.6 without restraints) Performing minimization step: 4849. Total energy = 248.2 kcal/mol (247.6 without restraints) Performing minimization step: 4850. Total energy = 248.2 kcal/mol (247.5 without restraints) Performing minimization step: 4851. Total energy = 248.2 kcal/mol (247.5 without restraints) Performing minimization step: 4852. Total energy = 248.2 kcal/mol (247.5 without restraints) Performing minimization step: 4853. Total energy = 248.2 kcal/mol (247.5 without restraints) Performing minimization step: 4854. Total energy = 248.2 kcal/mol (247.5 without restraints) Performing minimization step: 4855. Total energy = 248.2 kcal/mol (247.5 without restraints) Performing minimization step: 4856. Total energy = 248.2 kcal/mol (247.5 without restraints) Performing minimization step: 4857. Total energy = 248.2 kcal/mol (247.5 without restraints) Performing minimization step: 4858. Total energy = 248.2 kcal/mol (247.5 without restraints) Performing minimization step: 4859. Total energy = 248.2 kcal/mol (247.5 without restraints) Performing minimization step: 4860. Total energy = 248.2 kcal/mol (247.5 without restraints) Performing minimization step: 4861. Total energy = 248.2 kcal/mol (247.5 without restraints) Performing minimization step: 4862. Total energy = 248.2 kcal/mol (247.5 without restraints) Performing minimization step: 4863. Total energy = 248.2 kcal/mol (247.5 without restraints) Performing minimization step: 4864. Total energy = 248.1 kcal/mol (247.5 without restraints) Performing minimization step: 4865. Total energy = 248.1 kcal/mol (247.5 without restraints) Performing minimization step: 4866. Total energy = 248.1 kcal/mol (247.5 without restraints) Performing minimization step: 4867. Total energy = 248.1 kcal/mol (247.5 without restraints) Performing minimization step: 4868. Total energy = 248.1 kcal/mol (247.5 without restraints) Performing minimization step: 4869. Total energy = 248.1 kcal/mol (247.4 without restraints) Performing minimization step: 4870. Total energy = 248.1 kcal/mol (247.4 without restraints) Performing minimization step: 4871. Total energy = 248.1 kcal/mol (247.4 without restraints) Performing minimization step: 4872. Total energy = 248.1 kcal/mol (247.4 without restraints) Performing minimization step: 4873. Total energy = 248.1 kcal/mol (247.4 without restraints) Performing minimization step: 4874. Total energy = 248.1 kcal/mol (247.4 without restraints) Performing minimization step: 4875. Total energy = 248.1 kcal/mol (247.4 without restraints) Performing minimization step: 4876. Total energy = 248.1 kcal/mol (247.4 without restraints) Performing minimization step: 4877. Total energy = 248.1 kcal/mol (247.4 without restraints) Performing minimization step: 4878. Total energy = 248.1 kcal/mol (247.4 without restraints) Performing minimization step: 4879. Total energy = 248.1 kcal/mol (247.4 without restraints) Performing minimization step: 4880. Total energy = 248.1 kcal/mol (247.4 without restraints) Performing minimization step: 4881. Total energy = 248.1 kcal/mol (247.4 without restraints) Performing minimization step: 4882. Total energy = 248.1 kcal/mol (247.4 without restraints) Performing minimization step: 4883. Total energy = 248 kcal/mol (247.4 without restraints) Performing minimization step: 4884. Total energy = 248 kcal/mol (247.4 without restraints) Performing minimization step: 4885. Total energy = 248 kcal/mol (247.4 without restraints) Performing minimization step: 4886. Total energy = 248 kcal/mol (247.4 without restraints) Performing minimization step: 4887. Total energy = 248 kcal/mol (247.4 without restraints) Performing minimization step: 4888. Total energy = 248 kcal/mol (247.3 without restraints) Performing minimization step: 4889. Total energy = 248 kcal/mol (247.3 without restraints) Performing minimization step: 4890. Total energy = 248 kcal/mol (247.3 without restraints) Performing minimization step: 4891. Total energy = 248 kcal/mol (247.3 without restraints) Performing minimization step: 4892. Total energy = 248 kcal/mol (247.3 without restraints) Performing minimization step: 4893. Total energy = 248 kcal/mol (247.3 without restraints) Performing minimization step: 4894. Total energy = 248 kcal/mol (247.3 without restraints) Performing minimization step: 4895. Total energy = 248 kcal/mol (247.3 without restraints) Performing minimization step: 4896. Total energy = 248 kcal/mol (247.3 without restraints) Performing minimization step: 4897. Total energy = 248 kcal/mol (247.3 without restraints) Performing minimization step: 4898. Total energy = 248 kcal/mol (247.3 without restraints) Performing minimization step: 4899. Total energy = 248 kcal/mol (247.3 without restraints) Performing minimization step: 4900. Total energy = 248 kcal/mol (247.3 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 248 kcal/mol (247.3 without restraints) Performing minimization step: 4902. Total energy = 247.9 kcal/mol (247.3 without restraints) Performing minimization step: 4903. Total energy = 247.9 kcal/mol (247.3 without restraints) Performing minimization step: 4904. Total energy = 247.9 kcal/mol (247.3 without restraints) Performing minimization step: 4905. Total energy = 247.9 kcal/mol (247.3 without restraints) Performing minimization step: 4906. Total energy = 247.9 kcal/mol (247.3 without restraints) Performing minimization step: 4907. Total energy = 247.9 kcal/mol (247.2 without restraints) Performing minimization step: 4908. Total energy = 247.9 kcal/mol (247.2 without restraints) Performing minimization step: 4909. Total energy = 247.9 kcal/mol (247.2 without restraints) Performing minimization step: 4910. Total energy = 247.9 kcal/mol (247.2 without restraints) Performing minimization step: 4911. Total energy = 247.9 kcal/mol (247.2 without restraints) Performing minimization step: 4912. Total energy = 247.9 kcal/mol (247.2 without restraints) Performing minimization step: 4913. Total energy = 247.9 kcal/mol (247.2 without restraints) Performing minimization step: 4914. Total energy = 247.9 kcal/mol (247.2 without restraints) Performing minimization step: 4915. Total energy = 247.9 kcal/mol (247.2 without restraints) Performing minimization step: 4916. Total energy = 247.9 kcal/mol (247.2 without restraints) Performing minimization step: 4917. Total energy = 247.9 kcal/mol (247.2 without restraints) Performing minimization step: 4918. Total energy = 247.9 kcal/mol (247.2 without restraints) Performing minimization step: 4919. Total energy = 247.9 kcal/mol (247.2 without restraints) Performing minimization step: 4920. Total energy = 247.9 kcal/mol (247.2 without restraints) Performing minimization step: 4921. Total energy = 247.9 kcal/mol (247.2 without restraints) Performing minimization step: 4922. Total energy = 247.8 kcal/mol (247.2 without restraints) Performing minimization step: 4923. Total energy = 247.8 kcal/mol (247.2 without restraints) Performing minimization step: 4924. Total energy = 247.8 kcal/mol (247.2 without restraints) Performing minimization step: 4925. Total energy = 247.8 kcal/mol (247.2 without restraints) Performing minimization step: 4926. Total energy = 247.8 kcal/mol (247.1 without restraints) Performing minimization step: 4927. Total energy = 247.8 kcal/mol (247.1 without restraints) Performing minimization step: 4928. Total energy = 247.8 kcal/mol (247.1 without restraints) Performing minimization step: 4929. Total energy = 247.8 kcal/mol (247.1 without restraints) Performing minimization step: 4930. Total energy = 247.8 kcal/mol (247.1 without restraints) Performing minimization step: 4931. Total energy = 247.8 kcal/mol (247.1 without restraints) Performing minimization step: 4932. Total energy = 247.8 kcal/mol (247.1 without restraints) Performing minimization step: 4933. Total energy = 247.8 kcal/mol (247.1 without restraints) Performing minimization step: 4934. Total energy = 247.8 kcal/mol (247.1 without restraints) Performing minimization step: 4935. Total energy = 247.8 kcal/mol (247.1 without restraints) Performing minimization step: 4936. Total energy = 247.8 kcal/mol (247.1 without restraints) Performing minimization step: 4937. Total energy = 247.8 kcal/mol (247.1 without restraints) Performing minimization step: 4938. Total energy = 247.8 kcal/mol (247.1 without restraints) Performing minimization step: 4939. Total energy = 247.8 kcal/mol (247.1 without restraints) Performing minimization step: 4940. Total energy = 247.8 kcal/mol (247.1 without restraints) Performing minimization step: 4941. Total energy = 247.8 kcal/mol (247.1 without restraints) Performing minimization step: 4942. Total energy = 247.7 kcal/mol (247.1 without restraints) Performing minimization step: 4943. Total energy = 247.7 kcal/mol (247.1 without restraints) Performing minimization step: 4944. Total energy = 247.7 kcal/mol (247.1 without restraints) Performing minimization step: 4945. Total energy = 247.7 kcal/mol (247.1 without restraints) Performing minimization step: 4946. Total energy = 247.7 kcal/mol (247 without restraints) Performing minimization step: 4947. Total energy = 247.7 kcal/mol (247 without restraints) Performing minimization step: 4948. Total energy = 247.7 kcal/mol (247 without restraints) Performing minimization step: 4949. Total energy = 247.7 kcal/mol (247 without restraints) Performing minimization step: 4950. Total energy = 247.7 kcal/mol (247 without restraints) Performing minimization step: 4951. Total energy = 247.7 kcal/mol (247 without restraints) Performing minimization step: 4952. Total energy = 247.7 kcal/mol (247 without restraints) Performing minimization step: 4953. Total energy = 247.7 kcal/mol (247 without restraints) Performing minimization step: 4954. Total energy = 247.7 kcal/mol (247 without restraints) Performing minimization step: 4955. Total energy = 247.7 kcal/mol (247 without restraints) Performing minimization step: 4956. Total energy = 247.7 kcal/mol (247 without restraints) Performing minimization step: 4957. Total energy = 247.7 kcal/mol (247 without restraints) Performing minimization step: 4958. Total energy = 247.7 kcal/mol (247 without restraints) Performing minimization step: 4959. Total energy = 247.7 kcal/mol (247 without restraints) Performing minimization step: 4960. Total energy = 247.7 kcal/mol (247 without restraints) Performing minimization step: 4961. Total energy = 247.7 kcal/mol (247 without restraints) Performing minimization step: 4962. Total energy = 247.6 kcal/mol (247 without restraints) Performing minimization step: 4963. Total energy = 247.6 kcal/mol (247 without restraints) Performing minimization step: 4964. Total energy = 247.6 kcal/mol (247 without restraints) Performing minimization step: 4965. Total energy = 247.6 kcal/mol (247 without restraints) Performing minimization step: 4966. Total energy = 247.6 kcal/mol (246.9 without restraints) Performing minimization step: 4967. Total energy = 247.6 kcal/mol (246.9 without restraints) Performing minimization step: 4968. Total energy = 247.6 kcal/mol (246.9 without restraints) Performing minimization step: 4969. Total energy = 247.6 kcal/mol (246.9 without restraints) Performing minimization step: 4970. Total energy = 247.6 kcal/mol (246.9 without restraints) Performing minimization step: 4971. Total energy = 247.6 kcal/mol (246.9 without restraints) Performing minimization step: 4972. Total energy = 247.6 kcal/mol (246.9 without restraints) Performing minimization step: 4973. Total energy = 247.6 kcal/mol (246.9 without restraints) Performing minimization step: 4974. Total energy = 247.6 kcal/mol (246.9 without restraints) Performing minimization step: 4975. Total energy = 247.6 kcal/mol (246.9 without restraints) Performing minimization step: 4976. Total energy = 247.6 kcal/mol (246.9 without restraints) Performing minimization step: 4977. Total energy = 247.6 kcal/mol (246.9 without restraints) Performing minimization step: 4978. Total energy = 247.6 kcal/mol (246.9 without restraints) Performing minimization step: 4979. Total energy = 247.6 kcal/mol (246.9 without restraints) Performing minimization step: 4980. Total energy = 247.6 kcal/mol (246.9 without restraints) Performing minimization step: 4981. Total energy = 247.6 kcal/mol (246.9 without restraints) Performing minimization step: 4982. Total energy = 247.5 kcal/mol (246.9 without restraints) Performing minimization step: 4983. Total energy = 247.5 kcal/mol (246.9 without restraints) Performing minimization step: 4984. Total energy = 247.5 kcal/mol (246.9 without restraints) Performing minimization step: 4985. Total energy = 247.5 kcal/mol (246.9 without restraints) Performing minimization step: 4986. Total energy = 247.5 kcal/mol (246.8 without restraints) Performing minimization step: 4987. Total energy = 247.5 kcal/mol (246.8 without restraints) Performing minimization step: 4988. Total energy = 247.5 kcal/mol (246.8 without restraints) Performing minimization step: 4989. Total energy = 247.5 kcal/mol (246.8 without restraints) Performing minimization step: 4990. Total energy = 247.5 kcal/mol (246.8 without restraints) Performing minimization step: 4991. Total energy = 247.5 kcal/mol (246.8 without restraints) Performing minimization step: 4992. Total energy = 247.5 kcal/mol (246.8 without restraints) Performing minimization step: 4993. Total energy = 247.5 kcal/mol (246.8 without restraints) Performing minimization step: 4994. Total energy = 247.5 kcal/mol (246.8 without restraints) Performing minimization step: 4995. Total energy = 247.5 kcal/mol (246.8 without restraints) Performing minimization step: 4996. Total energy = 247.5 kcal/mol (246.8 without restraints) Performing minimization step: 4997. Total energy = 247.5 kcal/mol (246.8 without restraints) Performing minimization step: 4998. Total energy = 247.5 kcal/mol (246.8 without restraints) Performing minimization step: 4999. Total energy = 247.5 kcal/mol (246.8 without restraints) Performing minimization step: 5000. Total energy = 247.5 kcal/mol (246.8 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/bcd09014/tmp/example1_refx/example1_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to example1_refx.pdb DONE!