# prod_1ns_final.pdb #
****************************************************************************
    DSSR: Software for Defining the (Secondary) Structures of RNA
      by Xiang-Jun Lu (xiangjun@x3dna.org), beta-r08-on-20130323

   The program is currently under active development. As always, we
   greatly appreciate your feedback! Please report all DSSR-related
   issues on the 3DNA Forum (http://forum.x3dna.org/), and I strive
   to promptly respond to any questions posted there.
****************************************************************************
Date and time: Sun Mar  1 19:56:36 2026
File name: prod_1ns_final.pdb
    no. of DNA/RNA chains: 0 []
    no. of nucleotides:    15
    no. of waters:         183
    no. of metals:         4 [Na=1, K=1, Zn=2]
****************************************************************************
List of 11 base pair(s)
   1 A.DG278          A.DG283          [G+G]              06-VI     cWH cW+M
       36.1(...) C4'-exo  lambda=59.7; -101.4(anti) C2'-endo lambda=25.4
       d(C1'-C1')=11.92 d(N1-N9)=9.88 d(C6-C8)=9.65 tor(N1-C1'-C1'-N9)=22.1
       H-bonds[2]: "N1(imino)-O6(carbonyl)[2.81]; N2(amino)-N7[3.12]"
       bp_pars: [1.77    3.19    0.66    -14.86  0.61    -95.32]
   2 A.DG278          A.DG285          [G+G]              00-n/a    tWW tW+W
       36.1(...) C4'-exo  lambda=32.2; -76.8(anti) C2'-endo lambda=36.9
       d(C1'-C1')=13.16 d(N1-N9)=10.86 d(C6-C8)=11.32 tor(N1-C1'-C1'-N9)=177.9
       H-bonds[1]: "O6(carbonyl)-N2(amino)[3.07]"
       bp_pars: [-1.25   0.13    -2.08   20.39   14.20   179.56]
   3 A.DG278          A.DG292          [G+G]              06-VI     cHW cM+W
       36.1(...) C4'-exo  lambda=29.1; -107.5(anti) C1'-exo  lambda=63.3
       d(C1'-C1')=11.61 d(N1-N9)=9.67 d(C6-C8)=9.31 tor(N1-C1'-C1'-N9)=4.8
       H-bonds[2]: "N7-N2(amino)[3.16]; O6(carbonyl)-N1(imino)[2.96]"
       bp_pars: [-1.70   -3.37   0.49    13.05   -5.74   89.49]
   4 A.DG279          A.DG282          [G+G]              06-VI     cHW cM+W
       -124.0(anti) C2'-endo lambda=44.4; 78.7(syn) C2'-endo lambda=57.8
       d(C1'-C1')=10.73 d(N1-N9)=8.92 d(C6-C8)=8.36 tor(N1-C1'-C1'-N9)=-29.1
       H-bonds[4]: "OP2-N2(amino)[3.34]; N7-N1(imino)[3.22]; N7-N2(amino)[3.16]; O6(carbonyl)*O6(carbonyl)[3.03]"
       bp_pars: [-0.42   -4.25   -0.57   -28.01  35.21   89.23]
   5 A.DG279          A.DG291          [G+G]              06-VI     cWH cW+M
       -124.0(anti) C2'-endo lambda=60.5; 59.1(syn) C2'-endo lambda=35.0
       d(C1'-C1')=11.06 d(N1-N9)=9.17 d(C6-C8)=8.64 tor(N1-C1'-C1'-N9)=-4.1
       H-bonds[4]: "O6(carbonyl)*O6(carbonyl)[2.87]; N1(imino)-N7[3.13]; N1(imino)-O6(carbonyl)[3.09]; N2(amino)-N7[2.87]"
       bp_pars: [0.76    3.72    -1.45   30.54   9.43    -90.11]
   6 A.DG282          A.DG288          [G+G]              06-VI     cHW cM+W
       78.7(syn) C2'-endo lambda=36.4; -101.7(anti) C1'-exo  lambda=58.0
       d(C1'-C1')=10.94 d(N1-N9)=9.00 d(C6-C8)=8.40 tor(N1-C1'-C1'-N9)=-5.6
       H-bonds[3]: "N7-N1(imino)[3.06]; N7-N2(amino)[3.09]; O6(carbonyl)*O6(carbonyl)[2.78]"
       bp_pars: [-0.46   -4.19   0.50    -16.88  14.93   88.82]
   7 A.DG283          A.DG287          [G+G]              06-VI     cWH cW+M
       -101.4(anti) C2'-endo lambda=68.0; 69.8(syn) C2'-endo lambda=28.1
       d(C1'-C1')=11.49 d(N1-N9)=9.68 d(C6-C8)=9.47 tor(N1-C1'-C1'-N9)=-1.6
       H-bonds[2]: "N1(imino)-O6(carbonyl)[2.91]; N2(amino)-N7[2.91]"
       bp_pars: [2.11    3.23    -0.39   6.39    3.73    -86.27]
   8 A.DG285          A.DG287          [G+G]              00-n/a    cSH cm+M
       -76.8(anti) C2'-endo lambda=134.7; 69.8(syn) C2'-endo lambda=37.1
       d(C1'-C1')=7.23 d(N1-N9)=7.12 d(C6-C8)=7.50 tor(N1-C1'-C1'-N9)=4.7
       H-bonds[1]: "N2(amino)-O6(carbonyl)[3.32]"
       bp_pars: [5.27    -1.60   1.94    31.52   -11.62  -4.74]
   9 A.DG285          A.DG292          [G+G]              00-n/a    tW. cW+.
       -76.8(anti) C2'-endo lambda=90.1; -107.5(anti) C1'-exo  lambda=11.1
       d(C1'-C1')=12.63 d(N1-N9)=11.25 d(C6-C8)=11.79 tor(N1-C1'-C1'-N9)=-80.9
       H-bonds[1]: "N2(amino)-O6(carbonyl)[3.08]"
       bp_pars: [4.61    -1.03   1.69    1.23    -11.39  -90.79]
  10 A.DG287          A.DG292          [G+G]              06-VI     cWH cW+M
       69.8(syn) C2'-endo lambda=63.5; -107.5(anti) C1'-exo  lambda=30.6
       d(C1'-C1')=11.34 d(N1-N9)=9.41 d(C6-C8)=9.03 tor(N1-C1'-C1'-N9)=14.2
       H-bonds[2]: "N1(imino)-O6(carbonyl)[2.86]; N2(amino)-N7[3.00]"
       bp_pars: [1.64    3.44    0.53    -12.96  19.22   -87.23]
  11 A.DG288          A.DG291          [G+G]              06-VI     cHW cM+W
       -101.7(anti) C1'-exo  lambda=38.9; 59.1(syn) C2'-endo lambda=63.7
       d(C1'-C1')=10.75 d(N1-N9)=8.98 d(C6-C8)=8.35 tor(N1-C1'-C1'-N9)=-7.6
       H-bonds[4]: "N7-N1(imino)[3.07]; N7-N2(amino)[2.98]; O6(carbonyl)*O6(carbonyl)[2.92]; O6(carbonyl)-N1(imino)[3.32]"
       bp_pars: [-0.79   -4.10   0.44    -2.23   21.36   84.04]
****************************************************************************
List of 2 multiplet(s)
   1 nts=4 A.DG278+A.DG283+A.DG287+A.DG292 [GGGG]
   2 nts=4 A.DG279+A.DG282+A.DG288+A.DG291 [GGGG]
****************************************************************************
List of 2 helices
  helix=1[0] bps=2
   1 A.DG278          A.DG292          [G+G]              06-VI     cHW cM+W
   2 A.DG279          A.DG291          [G+G]              06-VI     cWH cW+M

  helix=2[0] bps=2
   1 A.DG282          A.DG288          [G+G]              06-VI     cHW cM+W
   2 A.DG283          A.DG287          [G+G]              06-VI     cWH cW+M
****************************************************************************
List of 2 G-quartet(s)
   2 nts=4  A.DG278+A.DG283+A.DG287+A.DG292 [GGGG]
   2 nts=4  A.DG279+A.DG282+A.DG288+A.DG291 [GGGG]
****************************************************************************

DONE!