============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360.pdb ============================================================================= Atom's 2087 C6 residue renamed to RC3 Atom's 2086 C5 residue renamed to RC3 Atom's 2085 N4 residue renamed to RC3 Atom's 2084 C4 residue renamed to RC3 Atom's 2083 N3 residue renamed to RC3 Atom's 2082 O2 residue renamed to RC3 Atom's 2081 C2 residue renamed to RC3 Atom's 2080 N1 residue renamed to RC3 Atom's 2079 C1' residue renamed to RC3 Atom's 2078 O2' residue renamed to RC3 Atom's 2077 C2' residue renamed to RC3 Atom's 2076 O3' residue renamed to RC3 Atom's 2075 C3' residue renamed to RC3 Atom's 2074 O4' residue renamed to RC3 Atom's 2073 C4' residue renamed to RC3 Atom's 2072 C5' residue renamed to RC3 Atom's 2071 O5' residue renamed to RC3 Atom's 2070 OP2 residue renamed to RC3 Atom's 2069 OP1 residue renamed to RC3 Atom's 2068 P residue renamed to RC3 Missing atom added: ATOM 21 H5'1 U A 1 40.240 -32.738 -44.691 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 1 38.443 -32.357 -44.928 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 1 38.584 -32.805 -42.833 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 1 37.805 -29.961 -43.711 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 1 39.488 -30.664 -40.352 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 1 37.166 -29.571 -41.394 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 1 36.876 -32.150 -41.311 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 1 40.819 -29.378 -43.348 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 1 39.997 -25.896 -39.572 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 1 41.847 -27.140 -43.586 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 2 34.645 -32.892 -44.241 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 2 35.945 -32.756 -45.554 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 2 34.641 -34.218 -46.335 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 2 32.846 -34.279 -45.335 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 2 34.565 -36.084 -47.583 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 2 32.293 -35.784 -46.745 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 2 32.661 -34.155 -48.589 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 2 34.485 -35.081 -44.167 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 2 34.283 -40.018 -45.552 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 2 34.496 -36.714 -42.372 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 3 29.184 -33.725 -48.704 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 3 29.468 -35.333 -47.829 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 3 29.456 -35.879 -49.872 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 3 28.865 -36.937 -48.736 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 3 32.272 -37.862 -49.943 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 3 29.657 -38.671 -50.118 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 3 29.926 -36.865 -51.865 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 3 31.194 -36.593 -46.864 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 3 31.378 -41.788 -47.024 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 3 31.048 -37.826 -44.726 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 4 27.548 -37.759 -51.828 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 4 25.698 -37.640 -51.836 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 4 26.431 -39.756 -52.384 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 4 25.192 -39.560 -49.570 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 4 27.841 -42.107 -50.292 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 4 25.295 -42.019 -49.560 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 4 25.321 -41.768 -52.176 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 4 27.769 -38.989 -48.813 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 4 28.323 -39.605 -44.159 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 4 28.122 -41.297 -43.992 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 4 28.207 -38.106 -46.304 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 5 23.443 -42.289 -50.563 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 5 21.622 -42.059 -50.817 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 5 22.647 -44.135 -49.990 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 5 21.607 -42.694 -47.561 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 5 24.851 -44.726 -47.445 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 5 22.421 -44.791 -46.385 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 5 22.160 -45.788 -48.834 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 5 24.170 -41.620 -47.581 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 5 24.480 -39.825 -43.219 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 5 24.510 -41.235 -42.249 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 5 24.300 -39.582 -45.821 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 6 20.151 -45.991 -48.413 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 6 18.326 -45.817 -48.137 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 6 19.271 -47.550 -46.941 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 6 18.174 -45.334 -45.289 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 6 21.214 -47.312 -44.083 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 6 18.625 -46.827 -43.364 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 6 18.598 -48.650 -45.300 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 6 20.771 -44.193 -45.479 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 6 21.511 -40.916 -42.152 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 6 21.518 -41.851 -40.718 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 6 21.166 -41.661 -44.640 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 7 17.321 -47.923 -43.946 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 7 15.479 -48.001 -43.752 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 7 16.294 -48.475 -41.810 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 7 14.904 -45.687 -41.996 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 7 17.596 -46.280 -39.518 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 7 14.993 -45.400 -39.709 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 7 14.900 -47.860 -39.476 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 7 17.294 -44.771 -42.809 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 7 18.191 -41.613 -38.791 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 7 17.907 -42.436 -43.300 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 8 10.495 -46.974 -39.427 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 8 10.888 -45.163 -39.467 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 8 10.724 -45.367 -37.471 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 8 10.723 -43.623 -38.446 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 8 13.951 -44.009 -36.589 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 8 11.612 -42.561 -36.520 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 8 11.185 -44.869 -35.400 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 8 13.606 -44.156 -39.692 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 8 15.927 -40.441 -41.394 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 8 16.122 -39.470 -39.998 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 8 14.671 -42.721 -41.691 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 9 7.434 -42.080 -35.421 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 9 8.147 -40.786 -36.538 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 9 8.302 -39.860 -34.690 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 9 8.698 -38.927 -36.470 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 9 11.891 -39.259 -34.678 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 9 10.164 -37.411 -35.379 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 9 9.325 -38.420 -33.179 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 9 10.585 -41.070 -37.407 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 9 13.584 -37.096 -38.917 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 9 11.265 -40.964 -39.782 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 10 6.629 -35.777 -33.400 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 10 6.528 -34.776 -34.957 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 10 7.269 -33.366 -34.245 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 10 6.691 -34.286 -36.770 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 10 10.260 -32.877 -36.129 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 10 7.889 -32.332 -37.623 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 10 7.472 -31.369 -35.316 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 10 8.837 -35.802 -36.911 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 10 11.041 -36.973 -40.924 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 10 11.875 -35.530 -41.313 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 10 9.498 -37.521 -38.880 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 11 5.066 -29.827 -35.731 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 11 4.749 -29.619 -37.545 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 11 5.475 -27.979 -37.484 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 11 4.800 -29.710 -39.470 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 11 8.340 -28.222 -39.639 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 11 5.888 -28.326 -41.068 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 11 5.670 -26.515 -39.361 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 11 6.803 -31.281 -39.019 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 11 8.424 -34.194 -42.369 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 11 9.254 -33.120 -43.412 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 11 7.144 -33.711 -40.135 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 12 4.020 -26.225 -41.475 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 12 2.391 -26.507 -42.312 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 12 4.045 -25.920 -43.785 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 12 2.945 -28.660 -44.149 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 12 6.627 -27.929 -44.892 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 12 4.328 -28.738 -46.184 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 12 4.250 -26.119 -45.937 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 12 4.939 -29.730 -42.490 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 12 6.263 -34.207 -43.241 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 12 7.055 -34.101 -44.755 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 12 5.129 -32.331 -41.805 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 13 2.819 -26.983 -47.833 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 13 1.098 -27.308 -48.439 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 13 2.610 -27.794 -50.063 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 13 1.272 -30.263 -48.777 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 13 4.801 -30.354 -50.310 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 13 2.261 -31.588 -50.539 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 13 2.137 -29.580 -51.990 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 13 3.120 -30.471 -47.195 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 13 5.616 -34.752 -48.745 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 13 3.416 -32.289 -45.555 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 14 0.423 -30.744 -52.965 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 14 -1.407 -30.672 -53.242 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 14 0.630 -31.682 -54.487 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 14 -0.317 -33.955 -53.138 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 14 3.435 -33.151 -52.906 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 14 1.772 -35.026 -53.991 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 14 1.789 -33.026 -55.662 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 14 1.205 -32.676 -50.355 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 14 4.130 -38.809 -49.433 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 14 4.639 -38.057 -52.962 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 14 4.454 -39.196 -51.750 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 15 0.054 -36.644 -56.106 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 15 -1.017 -36.195 -57.551 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 15 0.256 -38.332 -56.838 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 15 -2.133 -38.476 -54.800 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 15 1.649 -39.470 -54.246 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 15 -0.949 -40.591 -54.078 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 15 -0.277 -40.697 -56.564 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 15 -0.030 -36.751 -53.391 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 15 0.574 -40.199 -49.542 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 15 -0.445 -35.993 -51.074 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 16 -2.450 -42.212 -56.641 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 16 -4.235 -42.703 -56.563 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 16 -2.683 -44.343 -55.850 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 16 -4.572 -43.531 -53.850 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 16 -1.022 -44.202 -52.725 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 16 -3.449 -45.272 -52.447 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 16 -2.531 -46.111 -54.786 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 16 -2.881 -41.426 -53.204 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 16 -3.658 -39.564 -48.937 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 16 -3.165 -40.831 -47.896 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 16 -3.734 -39.477 -51.555 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 17 -4.892 -47.860 -53.855 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 17 -6.725 -48.132 -53.811 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 17 -5.421 -49.346 -52.254 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 17 -7.228 -47.567 -50.889 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 17 -3.723 -47.946 -49.457 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 17 -6.269 -48.464 -48.802 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 17 -5.542 -50.437 -50.309 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 17 -5.027 -45.492 -51.256 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 17 -5.744 -41.813 -48.394 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 17 -5.592 -42.527 -46.845 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 17 -5.612 -42.912 -50.769 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 18 -7.211 -50.160 -48.545 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 18 -8.681 -51.224 -48.173 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 18 -7.810 -50.577 -46.215 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 18 -10.601 -49.739 -46.947 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 18 -8.753 -47.337 -44.929 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 18 -11.408 -48.532 -46.072 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 18 -11.611 -49.175 -44.825 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 18 -8.837 -46.802 -48.189 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 18 -8.969 -43.043 -44.594 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 18 -8.659 -44.456 -48.953 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 19 -11.002 -53.125 -42.171 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 19 -9.336 -53.863 -42.514 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 19 -8.957 -54.357 -41.236 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 19 -8.769 -53.269 -40.502 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 19 -5.987 -54.315 -42.778 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 19 -6.530 -54.117 -40.161 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 19 -7.482 -56.383 -40.924 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 19 -7.798 -51.906 -43.801 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 19 -5.454 -47.818 -42.503 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 19 -4.150 -47.534 -41.437 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 19 -2.906 -51.501 -39.130 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 20 -7.578 -55.424 -36.969 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 20 -7.989 -53.788 -36.200 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 20 -6.345 -53.416 -35.747 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 20 -8.637 -51.860 -36.565 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 20 -5.063 -50.792 -37.641 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 20 -7.178 -49.919 -35.997 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 20 -5.891 -51.587 -34.538 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 20 -7.942 -51.857 -38.815 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 20 -9.059 -48.529 -41.980 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 20 -7.898 -47.314 -41.653 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 20 -9.405 -50.867 -40.852 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 21 -6.739 -50.871 -33.937 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 21 -7.567 -49.972 -32.544 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 21 -5.851 -48.734 -33.369 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 21 -8.624 -47.594 -33.842 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 21 -5.785 -46.982 -36.330 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 21 -7.640 -45.603 -34.693 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 21 -5.662 -46.137 -33.268 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 21 -8.367 -49.244 -36.415 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 21 -8.763 -45.266 -39.744 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 21 -10.047 -49.403 -38.223 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 22 -6.509 -44.565 -32.300 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 22 -7.241 -43.793 -30.783 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 22 -6.619 -42.149 -32.069 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 22 -9.694 -42.586 -31.801 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 22 -8.126 -40.847 -34.777 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 22 -9.920 -40.365 -32.802 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 22 -7.506 -40.041 -31.799 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 22 -9.891 -43.929 -33.735 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 22 -11.751 -41.193 -37.740 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 22 -11.815 -44.857 -34.971 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 23 -9.691 -38.650 -31.545 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 23 -10.529 -38.247 -29.942 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 23 -11.459 -37.094 -31.803 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 23 -13.173 -39.511 -30.841 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 23 -13.248 -38.446 -34.418 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 23 -14.862 -38.553 -32.436 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 23 -13.127 -36.381 -32.213 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 23 -12.000 -40.931 -32.372 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 23 -14.020 -44.939 -33.860 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 23 -15.193 -44.364 -34.966 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 23 -12.293 -43.611 -32.404 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 24 -14.967 -36.197 -30.691 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 24 -16.285 -36.186 -29.388 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 24 -17.363 -35.616 -31.108 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 24 -17.877 -38.444 -29.846 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 24 -18.705 -37.656 -33.448 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 24 -19.882 -38.609 -31.112 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 24 -19.879 -36.046 -31.000 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 24 -16.178 -39.318 -31.486 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 24 -19.175 -42.384 -34.434 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 24 -15.553 -41.702 -31.693 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 25 -21.583 -36.981 -28.713 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 25 -21.801 -37.708 -27.024 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 25 -23.519 -37.952 -28.751 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 25 -22.931 -40.205 -27.617 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 25 -22.969 -40.427 -31.379 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 25 -24.334 -41.353 -29.165 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 25 -25.328 -39.113 -29.763 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 25 -19.967 -40.546 -29.451 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 25 -21.909 -46.827 -31.425 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 25 -24.894 -44.765 -31.796 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 25 -24.214 -46.267 -31.509 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 26 -26.301 -39.967 -28.429 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 26 -27.547 -39.820 -27.065 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 26 -28.124 -41.335 -28.778 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 26 -27.032 -42.820 -26.262 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 26 -26.722 -44.167 -29.854 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 26 -27.852 -44.854 -27.469 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 26 -29.504 -43.096 -28.511 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 26 -24.552 -42.560 -27.671 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 26 -21.131 -45.677 -26.703 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 26 -21.782 -47.133 -27.327 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 26 -22.157 -43.265 -26.655 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 27 -30.970 -44.842 -26.346 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 27 -31.548 -44.846 -24.585 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 27 -31.672 -46.851 -25.965 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 27 -29.930 -47.278 -23.791 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 27 -28.838 -48.617 -27.192 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 27 -29.594 -49.531 -24.721 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 27 -31.783 -48.902 -26.068 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 27 -27.810 -45.915 -25.497 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 27 -24.530 -49.942 -25.240 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 27 -25.522 -45.497 -24.661 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 28 -32.402 -49.557 -24.501 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 28 -33.218 -50.234 -22.982 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 28 -32.629 -51.996 -24.065 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 28 -31.111 -51.237 -21.426 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 28 -29.430 -53.318 -23.980 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 28 -30.079 -53.302 -21.334 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 28 -32.088 -54.165 -22.619 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 28 -29.454 -49.683 -22.854 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 28 -23.404 -52.767 -21.844 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 28 -25.681 -55.454 -22.779 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 28 -24.324 -54.951 -21.940 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 29 -32.259 -54.867 -19.515 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 29 -32.481 -54.383 -17.741 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 29 -30.957 -56.073 -18.031 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 29 -29.817 -53.613 -16.896 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 29 -27.671 -55.438 -19.243 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 29 -27.741 -54.847 -16.654 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 29 -29.368 -56.889 -16.793 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 29 -29.615 -52.661 -19.560 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 29 -24.626 -51.620 -18.519 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 29 -28.828 -50.337 -19.857 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 30 -28.491 -56.700 -14.468 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 30 -28.369 -55.744 -12.886 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 30 -26.411 -56.544 -13.122 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 30 -26.869 -53.850 -12.379 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 30 -23.928 -54.731 -14.790 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 30 -24.463 -53.574 -12.209 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 30 -24.375 -56.021 -11.846 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 30 -26.996 -52.691 -15.049 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 30 -21.084 -49.332 -16.004 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 30 -20.115 -52.563 -14.622 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 30 -19.803 -50.930 -14.805 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 31 -23.779 -56.243 -10.222 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 31 -23.322 -55.138 -8.805 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 31 -21.522 -55.314 -9.336 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 31 -23.140 -52.768 -8.810 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 31 -20.236 -52.617 -11.155 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 31 -21.181 -51.481 -8.810 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 31 -20.051 -53.660 -8.139 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 31 -23.852 -52.712 -11.156 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 31 -25.236 -48.648 -13.124 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 31 -23.760 -47.792 -13.261 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 31 -25.699 -51.061 -12.216 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 32 -20.119 -52.105 -6.643 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 32 -20.302 -52.095 -4.799 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 32 -18.780 -50.511 -5.686 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 32 -21.501 -49.176 -4.977 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 32 -19.199 -47.862 -7.726 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 32 -20.482 -47.031 -5.372 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 32 -18.334 -48.152 -4.655 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 32 -22.109 -49.749 -7.642 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 32 -25.129 -47.346 -10.370 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 32 -24.292 -45.874 -10.625 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 32 -24.436 -49.449 -8.969 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 33 -23.009 -50.185 -2.024 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 33 -22.693 -50.703 -3.776 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 33 -24.877 -50.617 -2.421 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 33 -24.597 -47.690 -3.488 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 33 -25.775 -48.371 -0.008 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 33 -26.510 -47.054 -2.301 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 33 -27.191 -49.505 -2.536 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 33 -22.586 -47.685 -0.671 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 33 -22.382 -42.968 0.639 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 33 -23.594 -41.831 1.032 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 33 -27.941 -43.688 0.530 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 34 -28.398 -46.834 -3.765 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 34 -28.772 -46.138 -5.440 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 34 -29.022 -44.500 -3.918 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 34 -26.534 -44.234 -5.752 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 34 -26.374 -42.781 -2.388 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 34 -26.174 -42.024 -4.946 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 34 -28.745 -42.202 -4.574 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 34 -24.881 -46.088 -3.442 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 34 -20.010 -41.267 -3.338 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 34 -23.148 -39.415 -3.385 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 34 -21.518 -39.486 -3.757 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 35 -27.626 -40.524 -6.424 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 35 -27.724 -40.199 -8.246 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 35 -26.317 -38.718 -7.263 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 35 -24.856 -40.811 -8.990 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 35 -23.184 -39.308 -6.003 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 35 -22.838 -39.573 -8.665 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 35 -24.441 -37.587 -8.319 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 35 -25.002 -42.277 -6.896 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 35 -21.921 -45.860 -6.737 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 35 -20.430 -45.045 -6.522 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 35 -24.345 -44.891 -6.961 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 36 -23.225 -37.216 -11.321 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 36 -22.852 -38.168 -12.867 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 36 -20.979 -37.199 -12.164 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 36 -20.941 -39.800 -12.985 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 36 -19.090 -39.289 -9.768 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 36 -18.641 -39.914 -12.433 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 36 -18.903 -37.261 -12.133 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 36 -22.023 -40.608 -10.460 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 36 -21.620 -45.178 -9.327 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 36 -19.925 -45.364 -9.176 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 36 -23.025 -43.061 -9.962 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 37 -19.819 -41.086 -17.146 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 37 -18.293 -41.090 -16.094 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 37 -17.485 -42.071 -16.668 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 37 -17.949 -43.199 -16.762 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 37 -16.253 -42.258 -13.724 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 37 -15.941 -43.884 -15.599 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 37 -15.000 -41.531 -16.424 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 37 -19.492 -41.949 -14.415 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 37 -22.083 -45.331 -12.441 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 37 -20.894 -46.483 -12.005 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 37 -21.830 -43.064 -13.730 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 38 -15.080 -44.683 -16.834 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 38 -14.666 -45.675 -18.345 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 38 -14.419 -46.982 -16.531 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 38 -16.906 -47.596 -18.296 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 38 -16.944 -48.366 -14.639 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 38 -17.287 -49.572 -17.047 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 38 -14.817 -49.615 -16.696 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 38 -17.996 -45.684 -16.527 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 38 -22.716 -45.846 -16.676 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 38 -23.045 -47.398 -16.034 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 38 -20.424 -44.632 -17.041 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 39 -14.976 -50.932 -18.020 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 39 -14.360 -51.711 -19.585 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 39 -15.195 -53.080 -17.741 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 39 -17.175 -53.076 -19.967 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 39 -18.484 -52.980 -16.442 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 39 -18.582 -54.514 -18.713 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 39 -16.412 -55.074 -17.419 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 39 -18.051 -50.078 -18.322 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 39 -22.705 -48.981 -19.383 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 39 -24.164 -49.846 -19.181 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 39 -23.364 -54.217 -17.489 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 40 -18.151 -55.567 -20.173 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 40 -16.873 -56.113 -18.946 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 40 -19.270 -56.889 -19.629 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 40 -18.533 -55.553 -22.258 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 40 -21.679 -56.372 -20.519 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 40 -20.681 -56.240 -22.983 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 40 -20.046 -58.564 -22.025 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 40 -19.005 -54.261 -20.946 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 40 -21.042 -50.116 -21.929 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 40 -22.701 -50.533 -21.986 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 40 -18.954 -51.606 -21.403 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 41 -20.430 -58.744 -24.253 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 41 -19.821 -58.993 -25.986 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 41 -22.131 -58.913 -25.849 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 41 -20.903 -56.492 -27.213 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 41 -24.151 -56.235 -25.194 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 41 -23.104 -55.742 -27.763 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 41 -23.828 -58.122 -27.691 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 41 -20.723 -55.202 -24.581 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 41 -21.398 -50.362 -24.558 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 41 -22.750 -49.385 -24.925 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 41 -26.495 -52.023 -26.198 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 42 -23.687 -57.539 -29.489 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 42 -23.322 -57.586 -31.304 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 42 -25.165 -56.359 -30.997 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 42 -22.581 -54.659 -31.585 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 42 -25.753 -53.356 -29.838 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 42 -24.070 -52.790 -31.993 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 42 -25.714 -54.538 -32.791 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 42 -22.158 -54.007 -28.758 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 42 -24.371 -47.526 -28.339 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 42 -26.954 -49.281 -30.220 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 42 -26.123 -47.864 -29.903 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 43 -25.243 -54.255 -34.147 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 43 -24.546 -53.874 -35.821 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 43 -26.223 -52.452 -35.319 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 43 -23.472 -51.223 -35.543 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 43 -26.114 -49.711 -33.266 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 43 -24.722 -49.053 -35.469 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 43 -26.721 -50.495 -36.330 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 43 -23.327 -51.655 -32.810 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 43 -20.164 -49.069 -30.448 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 43 -20.839 -47.498 -30.543 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 43 -21.020 -51.327 -31.459 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 44 -25.502 -49.696 -37.999 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 44 -24.685 -49.620 -39.660 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 44 -25.749 -47.654 -38.881 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 44 -22.883 -47.291 -39.152 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 44 -24.636 -45.661 -36.182 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 44 -23.102 -45.035 -38.437 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 44 -25.509 -45.292 -39.188 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 44 -22.855 -48.607 -36.158 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 44 -20.684 -44.478 -33.855 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 44 -20.915 -48.990 -34.673 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 45 -20.552 -45.530 -42.045 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 45 -20.655 -45.708 -40.204 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 45 -19.669 -43.826 -40.407 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 45 -20.920 -42.832 -42.453 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 45 -18.352 -41.913 -39.946 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 45 -19.994 -40.953 -42.013 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 45 -21.203 -40.818 -40.066 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 45 -18.628 -44.302 -42.802 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 45 -14.921 -38.702 -43.835 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 45 -16.432 -38.222 -40.552 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 45 -15.874 -37.561 -41.984 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 46 -22.098 -40.485 -39.826 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 46 -23.521 -39.357 -40.201 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 46 -21.965 -38.044 -39.645 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 46 -22.876 -38.200 -42.662 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 46 -19.562 -36.791 -41.705 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 46 -21.830 -36.311 -43.279 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 46 -22.333 -35.460 -41.083 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 46 -21.097 -39.717 -43.101 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 46 -18.909 -40.394 -47.234 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 46 -17.910 -39.008 -47.346 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 46 -20.557 -41.126 -45.334 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 47 -23.113 -34.703 -41.633 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 47 -24.534 -33.694 -42.263 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 47 -22.686 -32.549 -42.685 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 47 -24.072 -33.874 -45.157 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 47 -20.372 -33.015 -45.089 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 47 -22.685 -32.547 -46.578 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 47 -22.673 -30.810 -44.810 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 47 -22.359 -35.973 -44.772 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 47 -19.633 -35.419 -49.166 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 47 -22.171 -37.926 -46.275 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 48 -24.393 -29.972 -46.857 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 48 -26.183 -29.622 -47.189 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 48 -24.563 -28.989 -48.864 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 48 -26.052 -31.519 -49.711 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 48 -22.414 -31.021 -50.635 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 48 -24.873 -31.440 -51.791 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 48 -24.656 -28.921 -51.234 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 48 -24.087 -32.706 -48.104 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 48 -23.744 -37.335 -48.999 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 48 -23.133 -37.350 -50.598 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 48 -24.334 -35.310 -47.447 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 49 -26.800 -29.371 -53.167 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 49 -28.631 -29.217 -53.413 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 49 -27.387 -29.739 -55.357 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 49 -28.954 -32.156 -54.366 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 49 -25.590 -32.598 -56.031 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 49 -28.200 -33.345 -56.310 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 49 -28.007 -30.976 -57.293 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 49 -26.979 -32.748 -52.482 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 49 -26.611 -37.556 -51.685 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 49 -26.167 -38.861 -52.694 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 49 -25.115 -37.372 -57.085 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 50 -32.475 -33.132 -56.712 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 50 -31.138 -34.004 -55.773 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 50 -31.526 -35.123 -57.657 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 50 -32.224 -35.916 -57.127 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 50 -28.860 -36.526 -58.104 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 50 -31.525 -37.568 -57.917 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 50 -31.260 -36.750 -59.882 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 50 -29.867 -34.987 -54.660 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 50 -28.932 -41.770 -54.244 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 50 -29.007 -41.050 -57.816 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 50 -29.305 -42.115 -56.561 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 51 -33.176 -37.608 -59.989 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 51 -34.903 -37.438 -60.638 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 51 -33.881 -39.609 -60.736 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 51 -35.607 -39.417 -58.107 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 51 -32.543 -41.578 -58.352 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 51 -35.188 -41.772 -57.787 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 51 -35.012 -41.893 -60.335 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 51 -33.323 -38.349 -57.037 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 51 -32.381 -42.101 -53.558 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 51 -33.052 -37.695 -54.667 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 52 -36.396 -42.493 -59.604 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 52 -38.048 -42.756 -60.402 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 52 -37.006 -44.688 -59.586 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 52 -38.776 -43.509 -57.192 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 52 -35.787 -45.801 -56.813 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 52 -38.416 -45.554 -56.017 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 52 -38.421 -46.615 -58.326 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 52 -36.438 -42.347 -56.864 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 52 -35.387 -40.709 -52.554 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 52 -35.135 -42.153 -51.670 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 52 -36.036 -40.373 -55.071 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 53 -40.435 -47.104 -57.894 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 53 -41.867 -47.071 -56.717 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 53 -40.666 -48.696 -56.000 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 53 -41.690 -46.632 -54.289 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 53 -38.217 -48.024 -53.526 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 53 -40.736 -47.947 -52.432 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 53 -40.734 -49.891 -54.180 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 53 -39.272 -45.112 -54.923 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 53 -38.768 -41.664 -51.726 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 53 -38.515 -42.547 -50.281 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 53 -39.161 -42.525 -54.170 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 54 -42.854 -49.816 -52.473 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 54 -44.704 -49.921 -52.529 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 54 -43.508 -50.514 -50.527 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 54 -45.113 -48.230 -49.989 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 54 -41.530 -48.446 -48.526 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 54 -44.179 -48.400 -47.683 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 54 -43.658 -50.843 -48.441 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 54 -42.927 -46.596 -51.001 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 54 -42.511 -42.100 -49.600 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 54 -42.067 -42.273 -47.956 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 54 -43.035 -43.932 -51.399 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 55 -44.797 -50.523 -47.264 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 55 -46.294 -50.639 -46.178 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 55 -44.809 -50.245 -44.754 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 55 -47.028 -48.120 -45.348 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 55 -43.680 -47.231 -43.779 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 55 -46.434 -46.984 -43.346 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 55 -45.802 -49.201 -42.426 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 55 -45.221 -47.053 -46.946 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 55 -45.830 -42.445 -47.770 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 55 -45.445 -41.754 -46.252 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 55 -45.781 -44.951 -48.534 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 56 -46.957 -48.396 -41.728 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 56 -48.542 -48.714 -40.822 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 56 -47.492 -47.196 -39.667 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 56 -49.892 -46.089 -41.416 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 56 -47.187 -43.878 -40.309 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 56 -49.785 -44.048 -40.235 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 56 -48.909 -45.374 -38.264 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 56 -48.051 -45.880 -43.326 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 56 -48.409 -40.722 -43.764 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 56 -48.427 -44.943 -45.574 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 57 -50.394 -45.258 -37.811 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 57 -52.161 -45.051 -37.290 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 57 -51.179 -43.149 -36.827 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 57 -53.122 -43.187 -39.297 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 57 -50.354 -40.642 -38.949 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 57 -53.099 -40.802 -39.282 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 57 -52.614 -40.956 -36.784 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 57 -50.757 -43.687 -40.621 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 57 -50.822 -42.634 -45.225 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 57 -50.960 -40.927 -45.204 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 57 -50.640 -44.328 -43.236 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 58 -55.210 -39.992 -37.124 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 58 -57.003 -40.230 -37.532 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 58 -56.537 -38.165 -38.092 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 58 -57.303 -40.119 -40.307 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 58 -54.968 -37.239 -41.040 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 58 -57.406 -38.325 -41.846 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 58 -57.828 -36.874 -39.790 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 58 -54.807 -40.790 -40.674 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 58 -53.123 -42.259 -44.817 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 58 -53.157 -40.823 -45.748 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 58 -53.736 -42.642 -42.300 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 59 -60.288 -36.937 -40.115 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 59 -61.974 -37.609 -40.492 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 59 -61.475 -35.571 -41.568 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 59 -61.655 -38.026 -43.322 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 59 -59.257 -35.997 -44.510 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 59 -61.152 -38.291 -44.769 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 59 -61.820 -37.365 -45.600 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 59 -59.318 -38.776 -43.249 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 59 -56.170 -40.872 -45.775 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 59 -55.620 -39.587 -46.764 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 59 -57.785 -40.829 -43.712 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 60 -62.101 -33.386 -44.928 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 60 -63.607 -33.198 -45.992 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 60 -61.840 -32.220 -46.973 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 60 -62.839 -34.904 -48.188 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 60 -59.267 -33.828 -48.670 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 60 -61.586 -34.862 -50.008 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 60 -61.853 -32.553 -50.046 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 60 -61.092 -36.162 -46.566 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 60 -57.712 -38.254 -49.920 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 60 -60.615 -38.580 -46.376 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 61 -63.688 -31.353 -51.310 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 61 -65.088 -32.121 -52.250 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 61 -63.434 -31.171 -53.619 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 61 -63.163 -34.280 -53.427 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 61 -60.208 -31.985 -54.122 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 61 -61.557 -34.125 -55.241 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 61 -62.825 -32.030 -55.958 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 61 -60.806 -33.319 -51.068 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 61 -55.572 -36.160 -54.486 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 61 -57.526 -34.432 -57.032 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 61 -56.499 -35.686 -56.618 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 62 -64.067 -37.762 -56.353 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 62 -63.717 -37.955 -54.545 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 62 -62.619 -39.116 -56.554 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 62 -60.941 -36.556 -56.155 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 62 -61.833 -37.815 -59.619 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 62 -59.632 -37.212 -58.057 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 62 -60.327 -39.596 -57.467 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 62 -63.556 -35.271 -57.927 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 62 -58.966 -32.616 -62.283 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 62 -57.896 -36.066 -61.788 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 62 -57.502 -34.478 -62.138 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 63 -57.996 -39.395 -56.632 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 63 -56.662 -39.117 -55.377 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 63 -55.845 -39.367 -57.545 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 63 -55.575 -36.548 -56.459 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 63 -56.171 -37.200 -60.182 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 63 -54.365 -35.930 -58.401 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 63 -53.666 -38.300 -58.576 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 63 -57.865 -35.920 -57.373 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 63 -57.467 -32.866 -61.559 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 63 -59.158 -33.816 -57.397 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 64 -54.819 -35.136 -54.395 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 64 -53.317 -34.145 -54.835 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 64 -54.578 -33.446 -52.949 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 64 -52.138 -35.096 -51.946 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 64 -55.475 -34.931 -50.083 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 64 -52.771 -34.445 -49.704 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 64 -53.772 -32.394 -50.916 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 64 -53.877 -37.517 -52.198 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 64 -54.192 -39.243 -45.559 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 64 -54.943 -35.677 -45.637 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 64 -54.316 -36.993 -44.816 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 65 -52.670 -32.235 -49.913 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 65 -51.230 -31.229 -49.324 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 65 -52.527 -31.609 -47.564 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 65 -49.840 -33.198 -47.633 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 65 -52.907 -34.362 -45.702 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 65 -50.285 -33.710 -45.285 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 65 -51.639 -31.476 -45.382 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 65 -51.287 -35.431 -48.897 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 65 -50.541 -40.022 -43.846 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 65 -51.712 -36.992 -42.193 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 65 -50.834 -38.415 -42.126 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 66 -49.265 -31.259 -44.097 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 66 -47.646 -30.358 -44.129 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 66 -48.331 -31.639 -42.160 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 66 -46.221 -33.211 -43.616 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 66 -49.177 -34.984 -41.947 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 66 -46.379 -34.862 -41.849 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 66 -47.213 -32.949 -40.408 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 66 -48.181 -34.236 -45.210 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 66 -47.949 -39.218 -43.733 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 66 -47.836 -35.949 -46.957 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 67 -44.335 -34.025 -39.191 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 67 -42.563 -33.583 -39.499 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 67 -43.120 -35.585 -38.264 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 67 -41.855 -36.295 -40.736 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 67 -44.849 -38.388 -39.575 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 67 -42.127 -38.626 -40.081 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 67 -42.338 -37.745 -37.705 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 67 -44.596 -36.154 -42.374 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 67 -44.657 -42.798 -44.106 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 67 -43.904 -42.769 -40.541 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 67 -43.761 -43.516 -42.031 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 68 -40.514 -38.897 -38.073 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 68 -38.678 -39.014 -37.862 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 68 -39.753 -41.075 -37.962 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 68 -38.187 -40.432 -40.519 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 68 -41.339 -42.634 -40.516 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 68 -38.663 -42.791 -41.133 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 68 -38.819 -43.174 -38.586 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 68 -40.592 -39.268 -41.870 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 68 -42.040 -43.991 -46.639 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 68 -41.429 -45.895 -43.591 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 68 -41.399 -45.814 -45.262 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 69 -37.335 -43.361 -39.495 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 69 -35.523 -43.664 -39.733 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 69 -36.916 -45.225 -40.743 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 69 -35.143 -43.936 -42.533 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 69 -38.861 -44.777 -43.558 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 69 -36.121 -45.411 -44.261 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 69 -36.714 -46.835 -42.223 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 69 -37.607 -42.509 -43.173 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 69 -38.899 -44.849 -49.496 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 69 -38.862 -47.823 -47.389 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 69 -38.620 -47.125 -48.890 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 70 -35.269 -48.142 -43.363 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 70 -33.585 -48.914 -43.293 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 70 -34.856 -49.707 -45.060 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 70 -32.823 -47.484 -45.997 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 70 -35.988 -48.258 -47.865 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 70 -33.358 -48.214 -48.280 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 70 -33.800 -50.501 -47.135 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 70 -34.807 -45.888 -45.518 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 70 -35.136 -44.167 -50.415 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 70 -34.506 -43.467 -45.921 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 71 -30.851 -50.828 -48.037 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 71 -29.064 -50.364 -47.883 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 71 -29.975 -50.885 -50.084 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 71 -29.040 -48.195 -49.940 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 71 -32.313 -48.565 -51.680 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 71 -29.716 -47.743 -52.118 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 71 -29.942 -50.235 -52.558 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 71 -31.331 -47.055 -48.528 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 71 -31.820 -42.358 -49.825 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 71 -32.132 -41.604 -51.325 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 71 -32.485 -44.800 -54.827 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 72 -27.976 -50.567 -52.797 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 72 -26.689 -49.455 -53.533 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 72 -27.545 -49.369 -55.104 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 72 -26.153 -47.294 -53.504 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 72 -29.186 -46.401 -55.790 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 72 -26.454 -45.895 -55.553 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 72 -26.668 -48.225 -56.716 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 72 -27.990 -46.522 -52.435 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 72 -28.697 -42.169 -50.751 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 72 -29.191 -41.315 -52.150 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 72 -28.087 -44.698 -50.455 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 73 -24.801 -46.857 -57.570 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 73 -22.948 -46.814 -57.548 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 73 -23.794 -45.143 -58.843 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 73 -22.508 -44.201 -56.231 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 73 -25.368 -42.280 -57.926 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 73 -22.715 -41.927 -57.164 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 73 -22.592 -43.081 -59.432 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 73 -25.267 -44.340 -55.223 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 73 -25.613 -39.263 -54.141 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 73 -25.863 -43.683 -52.915 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 74 -20.453 -42.137 -58.970 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 74 -18.681 -42.674 -59.023 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 74 -19.433 -40.401 -59.598 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 74 -18.370 -40.258 -56.773 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 74 -21.451 -38.225 -57.841 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 74 -18.868 -37.944 -56.707 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 74 -18.613 -38.021 -59.199 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 74 -21.275 -41.311 -55.914 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 74 -22.847 -35.844 -52.068 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 74 -21.590 -34.459 -55.196 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 74 -21.802 -34.309 -53.543 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 75 -16.513 -36.676 -58.309 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 75 -14.719 -36.663 -57.845 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 75 -16.006 -34.706 -57.432 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 75 -15.134 -35.900 -54.935 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 75 -18.622 -34.297 -55.182 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 75 -16.232 -33.933 -53.877 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 75 -15.950 -32.933 -56.288 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 75 -17.704 -37.565 -55.115 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 75 -19.269 -35.737 -50.505 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 75 -18.209 -39.198 -53.331 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 76 -11.418 -33.754 -53.013 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 76 -12.997 -34.034 -52.083 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 76 -12.510 -32.758 -50.887 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 76 -12.610 -33.953 -50.058 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 76 -15.907 -32.181 -50.388 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 76 -13.983 -32.864 -48.506 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 76 -13.228 -30.735 -49.597 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 76 -14.632 -35.136 -52.051 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 76 -16.353 -39.138 -50.248 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 76 -17.067 -38.599 -48.789 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 76 -15.018 -37.800 -52.059 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 77 -11.978 -31.099 -47.039 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 77 -10.536 -31.706 -46.045 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 77 -12.420 -31.311 -44.742 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 77 -11.328 -33.969 -44.652 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 77 -15.087 -33.617 -44.532 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 77 -13.095 -34.324 -42.908 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 77 -13.112 -31.668 -42.877 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 77 -12.861 -34.746 -46.924 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 77 -13.522 -39.405 -47.306 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 77 -14.482 -39.747 -45.931 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 77 -12.488 -37.136 -48.109 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 78 -12.269 -32.929 -41.061 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 78 -10.779 -32.671 -39.988 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 78 -12.304 -33.879 -38.845 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 78 -10.110 -35.813 -40.086 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 78 -13.601 -36.872 -39.042 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 78 -11.032 -37.483 -38.517 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 78 -11.594 -35.479 -36.995 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 78 -11.580 -35.920 -41.828 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 78 -10.891 -39.787 -44.461 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 78 -11.544 -41.020 -43.470 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 78 -10.726 -37.207 -44.040 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 79 -9.762 -36.670 -36.583 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 79 -8.029 -37.222 -36.236 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 79 -9.121 -38.910 -35.676 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 79 -7.153 -39.036 -38.065 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 79 -10.092 -41.409 -37.793 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 79 -7.320 -41.429 -37.981 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 79 -7.867 -41.139 -35.516 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 79 -9.310 -38.508 -39.959 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 79 -9.081 -44.571 -43.174 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 79 -9.148 -45.395 -39.622 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 79 -8.678 -45.792 -41.178 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 80 -4.534 -42.156 -35.687 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 80 -3.293 -41.986 -37.052 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 80 -3.902 -44.116 -36.948 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 80 -3.205 -43.074 -39.124 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 80 -6.482 -44.977 -39.367 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 80 -3.862 -45.122 -40.239 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 80 -3.869 -46.164 -37.923 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 80 -6.142 -41.697 -39.795 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 80 -5.708 -44.701 -45.937 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 80 -4.914 -47.342 -43.555 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 80 -4.749 -46.698 -45.090 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 81 -1.492 -46.533 -38.765 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 81 0.345 -46.360 -38.925 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 81 -0.344 -48.011 -40.270 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 81 0.784 -45.521 -41.605 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 81 -1.877 -47.490 -43.387 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 81 0.695 -46.457 -43.701 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 81 0.940 -48.635 -42.603 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 81 -1.917 -44.137 -41.493 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 81 -1.971 -43.686 -48.287 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 81 -1.294 -47.201 -47.593 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 81 -1.081 -45.867 -48.580 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 82 2.868 -48.229 -43.791 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 82 4.629 -48.494 -43.278 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 82 3.704 -48.458 -45.621 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 82 4.683 -45.614 -45.219 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 82 1.448 -46.542 -47.169 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 82 3.929 -45.332 -47.590 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 82 4.328 -47.912 -47.685 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 82 1.712 -44.852 -44.098 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 82 0.503 -40.331 -45.539 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 82 0.267 -39.643 -47.084 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 82 1.254 -42.759 -50.535 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 83 5.792 -46.769 -48.145 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 83 7.635 -46.964 -48.125 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 83 6.717 -46.202 -50.149 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 83 7.768 -43.748 -48.488 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 83 4.969 -43.532 -51.065 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 83 7.417 -42.387 -50.437 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 83 7.876 -44.536 -51.735 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 83 5.068 -43.920 -47.678 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 83 3.060 -40.091 -45.775 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 83 2.944 -39.038 -47.120 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 83 4.060 -42.509 -45.618 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 84 9.017 -43.496 -51.797 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 84 10.757 -42.861 -51.856 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 84 9.580 -41.639 -53.247 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 84 10.324 -40.197 -50.553 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 84 7.403 -39.156 -52.662 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 84 9.674 -38.126 -51.659 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 84 10.259 -39.496 -53.849 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 84 7.633 -41.090 -49.466 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 84 5.809 -37.772 -46.356 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 84 5.350 -36.139 -46.555 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 84 6.271 -34.610 -50.961 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 85 11.570 -38.516 -52.924 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 85 13.390 -38.184 -52.836 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 85 12.168 -36.334 -53.527 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 85 13.054 -36.182 -50.532 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 85 9.980 -34.385 -51.810 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 85 12.344 -33.917 -50.461 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 85 12.844 -33.811 -52.923 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 85 10.397 -37.514 -49.990 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 85 7.593 -32.468 -46.271 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 85 8.927 -30.818 -49.236 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 85 8.524 -30.747 -47.614 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 86 14.576 -32.218 -51.712 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 86 16.322 -32.019 -51.123 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 86 14.844 -30.238 -50.660 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 86 15.493 -31.779 -48.142 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 86 12.071 -30.187 -48.636 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 86 14.226 -30.029 -46.968 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 86 14.781 -28.660 -49.159 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 86 13.313 -33.427 -48.740 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 86 11.397 -35.720 -45.079 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 86 10.696 -34.443 -44.179 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 86 12.713 -35.651 -47.343 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 87 16.456 -28.160 -46.991 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 87 18.140 -28.138 -46.216 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 87 16.582 -26.954 -44.983 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 87 17.441 -29.533 -43.617 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 87 13.936 -28.108 -43.170 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 87 16.140 -28.781 -41.704 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 87 16.604 -26.446 -42.626 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 87 15.582 -30.706 -45.003 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 87 14.105 -34.817 -43.197 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 87 13.245 -34.313 -41.806 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 87 15.352 -33.392 -45.008 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 88 18.320 -27.436 -39.600 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 88 20.118 -27.794 -39.330 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 88 18.290 -27.915 -37.621 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 88 19.049 -30.598 -38.124 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 88 15.290 -29.795 -37.931 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 88 17.301 -31.338 -36.666 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 88 17.431 -28.995 -35.716 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 88 17.165 -30.682 -40.775 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 88 15.389 -35.191 -41.496 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 88 14.364 -36.187 -40.561 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 88 13.274 -34.135 -36.413 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 89 18.152 -30.399 -33.935 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 89 19.271 -31.759 -33.363 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 89 17.866 -32.628 -32.600 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 89 19.997 -33.689 -34.598 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 89 16.536 -35.339 -34.012 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 89 19.369 -35.918 -34.022 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 89 18.913 -35.083 -31.783 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 89 18.486 -33.857 -36.873 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 89 15.784 -40.034 -37.900 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 89 15.137 -39.305 -34.387 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 89 15.455 -40.431 -35.583 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 90 19.457 -35.892 -31.292 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 90 20.938 -36.395 -30.298 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 90 19.291 -38.031 -30.464 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 90 21.630 -38.644 -32.426 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 90 17.981 -39.776 -32.960 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 90 20.553 -40.818 -32.751 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 90 19.680 -40.301 -30.335 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 90 20.314 -37.380 -34.209 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 90 18.374 -40.882 -37.532 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 90 20.773 -37.074 -36.619 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 91 21.545 -42.173 -29.883 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 91 23.100 -42.835 -30.643 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 91 21.938 -44.419 -31.149 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 91 23.828 -43.048 -32.884 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 91 20.539 -44.413 -34.330 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 91 23.319 -44.722 -34.559 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 91 22.714 -46.092 -32.522 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 91 22.241 -41.302 -33.535 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 91 21.493 -42.213 -38.603 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 91 22.732 -39.476 -35.129 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 92 24.039 -46.013 -33.423 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 92 25.303 -47.037 -32.537 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 92 24.654 -47.937 -34.585 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 92 27.249 -46.141 -35.055 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 92 24.724 -47.088 -37.698 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 92 27.536 -45.867 -36.814 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 92 28.183 -47.075 -37.117 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 92 25.838 -44.191 -35.978 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 92 24.784 -43.801 -42.675 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 92 24.096 -47.280 -41.830 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 92 24.661 -46.157 -42.934 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 93 28.033 -50.684 -38.307 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 93 29.718 -50.111 -38.823 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 93 28.353 -50.749 -40.603 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 93 29.860 -48.745 -40.962 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 93 26.221 -48.206 -42.031 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 93 28.675 -48.563 -43.163 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 93 27.848 -50.974 -42.521 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 93 28.243 -46.470 -39.504 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 93 27.576 -42.847 -45.300 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 93 26.605 -46.243 -46.201 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 93 27.254 -44.768 -46.654 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 94 29.960 -50.803 -44.480 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 94 31.733 -51.162 -44.882 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 94 30.742 -50.233 -46.675 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 94 32.859 -48.524 -45.275 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 94 29.983 -46.883 -47.085 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 94 32.714 -46.971 -47.092 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 94 31.885 -48.955 -48.474 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 94 30.861 -47.592 -43.667 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 94 31.092 -42.635 -45.221 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 94 31.147 -45.847 -41.939 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 95 34.486 -48.549 -49.488 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 95 36.324 -48.707 -49.303 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 95 35.802 -46.947 -50.671 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 95 37.109 -46.241 -48.052 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 95 34.549 -43.888 -49.544 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 95 37.224 -43.981 -48.683 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 95 37.201 -44.742 -51.045 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 95 34.672 -46.224 -46.904 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 95 34.093 -43.656 -42.985 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 95 34.218 -42.056 -43.579 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 95 34.196 -45.937 -44.269 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 96 38.575 -44.645 -51.700 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 96 40.394 -44.291 -51.649 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 96 39.211 -42.541 -52.539 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 96 40.587 -41.869 -49.995 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 96 37.108 -40.355 -51.019 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 96 39.809 -39.552 -50.494 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 96 39.787 -40.436 -52.924 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 96 38.221 -42.527 -48.637 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 96 37.072 -40.418 -44.565 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 96 36.656 -38.839 -45.079 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 96 37.863 -42.486 -45.965 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 97 41.046 -38.515 -51.704 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 97 42.824 -38.092 -52.013 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 97 41.704 -36.320 -51.128 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 97 43.545 -37.782 -49.070 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 97 40.454 -35.753 -48.096 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 97 43.177 -35.885 -47.602 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 97 42.857 -34.619 -49.833 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 97 41.164 -39.165 -48.533 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 97 40.129 -37.465 -43.727 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 97 40.778 -40.848 -46.764 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 98 45.171 -33.439 -49.794 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 98 46.284 -33.800 -48.356 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 98 45.632 -32.542 -47.340 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 98 46.750 -35.164 -46.875 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 98 43.831 -33.863 -44.671 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 98 46.566 -34.517 -44.474 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 98 46.553 -32.107 -45.346 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 98 44.352 -36.254 -46.979 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 98 43.304 -40.226 -44.644 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 98 43.212 -39.680 -43.024 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 98 43.785 -38.885 -46.842 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 99 47.933 -32.235 -44.782 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 99 49.741 -32.341 -44.391 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 99 48.896 -31.939 -42.481 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 99 50.320 -34.618 -43.069 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 99 47.703 -34.459 -40.408 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 99 50.319 -35.129 -40.763 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 99 50.186 -32.600 -40.390 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 99 47.839 -35.451 -43.796 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 99 47.511 -39.236 -40.242 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 99 47.388 -37.751 -44.585 1.00 0.00 H Missing atom added: ATOM 21 H5'1 RC3 A 100 52.204 -33.068 -40.066 1.00 0.00 H Missing atom added: ATOM 22 H5'2 RC3 A 100 53.891 -33.828 -40.184 1.00 0.00 H Missing atom added: ATOM 23 H4' RC3 A 100 53.118 -34.509 -38.295 1.00 0.00 H Missing atom added: ATOM 24 H3' RC3 A 100 53.921 -36.555 -40.314 1.00 0.00 H Missing atom added: ATOM 27 H1' RC3 A 100 51.048 -37.251 -37.909 1.00 0.00 H Missing atom added: ATOM 25 H2' RC3 A 100 53.520 -38.249 -38.666 1.00 0.00 H Missing atom added: ATOM 26 HO'2 RC3 A 100 53.999 -36.496 -36.970 1.00 0.00 H Missing atom added: ATOM 30 H6 RC3 A 100 51.915 -36.572 -41.354 1.00 0.00 H Missing atom added: ATOM 28 H41 RC3 A 100 50.330 -40.278 -43.804 1.00 0.00 H Missing atom added: ATOM 29 H42 RC3 A 100 49.791 -41.327 -42.563 1.00 0.00 H Missing atom added: ATOM 31 H5 RC3 A 100 51.342 -37.867 -43.642 1.00 0.00 H Missing atom added: ATOM 32 H3T RC3 A 100 54.971 -36.725 -38.210 1.00 0.00 H Missing atom added: ATOM 3 OP3 U A 1 41.345 -31.260 -47.166 1.00 56.94 O Number of atoms: 3161 Number of residues: 100 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 3392 Number of angles built: 6078 Number of dihedrals built: 9245 Number of impropers built: 655 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 4984910 Number of van der Waals pairs: 373603 Number of H-bonds built: 76 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 19 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 126054.9638 kcal/mol (125246.2092 without restraints) Performing minimization step: 2. Total energy = 119658.3356 kcal/mol (118924.7801 without restraints) Performing minimization step: 3. Total energy = 113864.4454 kcal/mol (113198.1271 without restraints) Performing minimization step: 4. Total energy = 108609.6946 kcal/mol (108003.5439 without restraints) Performing minimization step: 5. Total energy = 103837.5907 kcal/mol (103285.3257 without restraints) Performing minimization step: 6. Total energy = 99497.9138 kcal/mol (98993.9473 without restraints) Performing minimization step: 7. Total energy = 95545.9827 kcal/mol (95085.3420 without restraints) Performing minimization step: 8. Total energy = 91942.0116 kcal/mol (91520.2667 without restraints) Performing minimization step: 9. Total energy = 88650.5427 kcal/mol (88263.7440 without restraints) Performing minimization step: 10. Total energy = 85639.9479 kcal/mol (85284.5704 without restraints) Performing minimization step: 11. Total energy = 82881.9893 kcal/mol (82554.8848 without restraints) Performing minimization step: 12. Total energy = 80351.4334 kcal/mol (80049.7871 without restraints) Performing minimization step: 13. Total energy = 78025.7110 kcal/mol (77747.0042 without restraints) Performing minimization step: 14. Total energy = 75884.6186 kcal/mol (75626.5957 without restraints) Performing minimization step: 15. Total energy = 73910.0550 kcal/mol (73670.6944 without restraints) Performing minimization step: 16. Total energy = 72085.7918 kcal/mol (71863.2803 without restraints) Performing minimization step: 17. Total energy = 70397.2693 kcal/mol (70189.9796 without restraints) Performing minimization step: 18. Total energy = 68831.4184 kcal/mol (68637.8896 without restraints) Performing minimization step: 19. Total energy = 67376.5035 kcal/mol (67195.4234 without restraints) Performing minimization step: 20. Total energy = 66021.9832 kcal/mol (65852.1731 without restraints) Performing minimization step: 21. Total energy = 64758.3879 kcal/mol (64598.7890 without restraints) Performing minimization step: 22. Total energy = 63577.2109 kcal/mol (63426.8720 without restraints) Performing minimization step: 23. Total energy = 62470.8109 kcal/mol (62328.8776 without restraints) Performing minimization step: 24. Total energy = 61432.3253 kcal/mol (61298.0304 without restraints) Performing minimization step: 25. Total energy = 60455.5924 kcal/mol (60328.2473 without restraints) Performing minimization step: 26. Total energy = 59535.0808 kcal/mol (59414.0673 without restraints) Performing minimization step: 27. Total energy = 58665.8265 kcal/mol (58550.5897 without restraints) Performing minimization step: 28. Total energy = 57843.3745 kcal/mol (57733.4167 without restraints) Performing minimization step: 29. Total energy = 57063.7275 kcal/mol (56958.6021 without restraints) Performing minimization step: 30. Total energy = 56323.2983 kcal/mol (56222.6044 without restraints) Performing minimization step: 31. Total energy = 55618.8667 kcal/mol (55522.2445 without restraints) Performing minimization step: 32. Total energy = 54947.5414 kcal/mol (54854.6675 without restraints) Performing minimization step: 33. Total energy = 54306.7239 kcal/mol (54217.3079 without restraints) Performing minimization step: 34. Total energy = 53694.0777 kcal/mol (53607.8580 without restraints) Performing minimization step: 35. Total energy = 53107.4995 kcal/mol (53024.2408 without restraints) Performing minimization step: 36. Total energy = 52545.0934 kcal/mol (52464.5835 without restraints) Performing minimization step: 37. Total energy = 52005.1489 kcal/mol (51927.1959 without restraints) Performing minimization step: 38. Total energy = 51486.1193 kcal/mol (51410.5497 without restraints) Performing minimization step: 39. Total energy = 50986.6049 kcal/mol (50913.2616 without restraints) Performing minimization step: 40. Total energy = 50505.3354 kcal/mol (50434.0757 without restraints) Performing minimization step: 41. Total energy = 50041.1567 kcal/mol (49971.8506 without restraints) Performing minimization step: 42. Total energy = 49593.0176 kcal/mol (49525.5468 without restraints) Performing minimization step: 43. Total energy = 49159.9590 kcal/mol (49094.2156 without restraints) Performing minimization step: 44. Total energy = 48741.1041 kcal/mol (48676.9890 without restraints) Performing minimization step: 45. Total energy = 48335.6493 kcal/mol (48273.0717 without restraints) Performing minimization step: 46. Total energy = 47942.8562 kcal/mol (47881.7326 without restraints) Performing minimization step: 47. Total energy = 47562.0455 kcal/mol (47502.2990 without restraints) Performing minimization step: 48. Total energy = 47192.5907 kcal/mol (47134.1504 without restraints) Performing minimization step: 49. Total energy = 46833.9129 kcal/mol (46776.7130 without restraints) Performing minimization step: 50. Total energy = 46485.4756 kcal/mol (46429.4553 without restraints) Performing minimization step: 51. Total energy = 46146.7810 kcal/mol (46091.8837 without restraints) Performing minimization step: 52. Total energy = 45817.3665 kcal/mol (45763.5394 without restraints) Performing minimization step: 53. Total energy = 45496.8006 kcal/mol (45443.9948 without restraints) Performing minimization step: 54. Total energy = 45184.6813 kcal/mol (45132.8508 without restraints) Performing minimization step: 55. Total energy = 44880.6323 kcal/mol (44829.7342 without restraints) Performing minimization step: 56. Total energy = 44584.3008 kcal/mol (44534.2951 without restraints) Performing minimization step: 57. Total energy = 44295.3573 kcal/mol (44246.2061 without restraints) Performing minimization step: 58. Total energy = 44013.4903 kcal/mol (43965.1581 without restraints) Performing minimization step: 59. Total energy = 43738.4078 kcal/mol (43690.8612 without restraints) Performing minimization step: 60. Total energy = 43469.8349 kcal/mol (43423.0423 without restraints) Performing minimization step: 61. Total energy = 43207.5115 kcal/mol (43161.4432 without restraints) Performing minimization step: 62. Total energy = 42951.1924 kcal/mol (42905.8203 without restraints) Performing minimization step: 63. Total energy = 42700.6455 kcal/mol (42655.9430 without restraints) Performing minimization step: 64. Total energy = 42455.6515 kcal/mol (42411.5934 without restraints) Performing minimization step: 65. Total energy = 42216.0024 kcal/mol (42172.5649 without restraints) Performing minimization step: 66. Total energy = 41981.4998 kcal/mol (41938.6601 without restraints) Performing minimization step: 67. Total energy = 41751.9566 kcal/mol (41709.6931 without restraints) Performing minimization step: 68. Total energy = 41527.1943 kcal/mol (41485.4867 without restraints) Performing minimization step: 69. Total energy = 41307.0433 kcal/mol (41265.8720 without restraints) Performing minimization step: 70. Total energy = 41091.3421 kcal/mol (41050.6885 without restraints) Performing minimization step: 71. Total energy = 40879.9366 kcal/mol (40839.7830 without restraints) Performing minimization step: 72. Total energy = 40672.6801 kcal/mol (40633.0096 without restraints) Performing minimization step: 73. Total energy = 40469.4324 kcal/mol (40430.2289 without restraints) Performing minimization step: 74. Total energy = 40270.0598 kcal/mol (40231.3079 without restraints) Performing minimization step: 75. Total energy = 40074.4343 kcal/mol (40036.1194 without restraints) Performing minimization step: 76. Total energy = 39882.4342 kcal/mol (39844.5420 without restraints) Performing minimization step: 77. Total energy = 39693.9418 kcal/mol (39656.4591 without restraints) Performing minimization step: 78. Total energy = 39508.8457 kcal/mol (39471.7594 without restraints) Performing minimization step: 79. Total energy = 39327.0384 kcal/mol (39290.3362 without restraints) Performing minimization step: 80. Total energy = 39148.4176 kcal/mol (39112.0878 without restraints) Performing minimization step: 81. Total energy = 38972.8848 kcal/mol (38936.9160 without restraints) Performing minimization step: 82. Total energy = 38800.3458 kcal/mol (38764.7271 without restraints) Performing minimization step: 83. Total energy = 38630.7096 kcal/mol (38595.4305 without restraints) Performing minimization step: 84. Total energy = 38463.8895 kcal/mol (38428.9401 without restraints) Performing minimization step: 85. Total energy = 38299.8022 kcal/mol (38265.1729 without restraints) Performing minimization step: 86. Total energy = 38138.3672 kcal/mol (38104.0487 without restraints) Performing minimization step: 87. Total energy = 37979.5076 kcal/mol (37945.4910 without restraints) Performing minimization step: 88. Total energy = 37823.1494 kcal/mol (37789.4263 without restraints) Performing minimization step: 89. Total energy = 37669.2211 kcal/mol (37635.7830 without restraints) Performing minimization step: 90. Total energy = 37517.6546 kcal/mol (37484.4940 without restraints) Performing minimization step: 91. Total energy = 37368.3840 kcal/mol (37335.4931 without restraints) Performing minimization step: 92. Total energy = 37221.3456 kcal/mol (37188.7171 without restraints) Performing minimization step: 93. Total energy = 37076.4783 kcal/mol (37044.1051 without restraints) Performing minimization step: 94. Total energy = 36933.7232 kcal/mol (36901.5986 without restraints) Performing minimization step: 95. Total energy = 36793.0241 kcal/mol (36761.1415 without restraints) Performing minimization step: 96. Total energy = 36654.3253 kcal/mol (36622.6785 without restraints) Performing minimization step: 97. Total energy = 36517.5746 kcal/mol (36486.1574 without restraints) Performing minimization step: 98. Total energy = 36382.7211 kcal/mol (36351.5277 without restraints) Performing minimization step: 99. Total energy = 36249.7156 kcal/mol (36218.7403 without restraints) Performing minimization step: 100. Total energy = 36118.5108 kcal/mol (36087.7483 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 101. Total energy = 35989.0613 kcal/mol (35958.5062 without restraints) Performing minimization step: 102. Total energy = 35861.3228 kcal/mol (35830.9701 without restraints) Performing minimization step: 103. Total energy = 35735.2526 kcal/mol (35705.0973 without restraints) Performing minimization step: 104. Total energy = 35610.8093 kcal/mol (35580.8468 without restraints) Performing minimization step: 105. Total energy = 35487.9531 kcal/mol (35458.1787 without restraints) Performing minimization step: 106. Total energy = 35366.6455 kcal/mol (35337.0548 without restraints) Performing minimization step: 107. Total energy = 35246.8493 kcal/mol (35217.4380 without restraints) Performing minimization step: 108. Total energy = 35128.5290 kcal/mol (35099.2930 without restraints) Performing minimization step: 109. Total energy = 35011.6495 kcal/mol (34982.5848 without restraints) Performing minimization step: 110. Total energy = 34896.1769 kcal/mol (34867.2796 without restraints) Performing minimization step: 111. Total energy = 34782.0785 kcal/mol (34753.3448 without restraints) Performing minimization step: 112. Total energy = 34669.3232 kcal/mol (34640.7495 without restraints) Performing minimization step: 113. Total energy = 34557.8799 kcal/mol (34529.4627 without restraints) Performing minimization step: 114. Total energy = 34447.7192 kcal/mol (34419.4551 without restraints) Performing minimization step: 115. Total energy = 34338.8126 kcal/mol (34310.6985 without restraints) Performing minimization step: 116. Total energy = 34231.1324 kcal/mol (34203.1647 without restraints) Performing minimization step: 117. Total energy = 34124.6503 kcal/mol (34096.8261 without restraints) Performing minimization step: 118. Total energy = 34019.3409 kcal/mol (33991.6572 without restraints) Performing minimization step: 119. Total energy = 33915.1793 kcal/mol (33887.6332 without restraints) Performing minimization step: 120. Total energy = 33812.1403 kcal/mol (33784.7289 without restraints) Performing minimization step: 121. Total energy = 33710.2003 kcal/mol (33682.9208 without restraints) Performing minimization step: 122. Total energy = 33609.3362 kcal/mol (33582.1862 without restraints) Performing minimization step: 123. Total energy = 33509.5253 kcal/mol (33482.5021 without restraints) Performing minimization step: 124. Total energy = 33410.7456 kcal/mol (33383.8466 without restraints) Performing minimization step: 125. Total energy = 33312.9760 kcal/mol (33286.1989 without restraints) Performing minimization step: 126. Total energy = 33216.1961 kcal/mol (33189.5385 without restraints) Performing minimization step: 127. Total energy = 33120.3858 kcal/mol (33093.8454 without restraints) Performing minimization step: 128. Total energy = 33025.5252 kcal/mol (32999.0999 without restraints) Performing minimization step: 129. Total energy = 32931.5956 kcal/mol (32905.2829 without restraints) Performing minimization step: 130. Total energy = 32838.5784 kcal/mol (32812.3764 without restraints) Performing minimization step: 131. Total energy = 32746.4558 kcal/mol (32720.3624 without restraints) Performing minimization step: 132. Total energy = 32655.2104 kcal/mol (32629.2236 without restraints) Performing minimization step: 133. Total energy = 32564.8251 kcal/mol (32538.9429 without restraints) Performing minimization step: 134. Total energy = 32475.2835 kcal/mol (32449.5042 without restraints) Performing minimization step: 135. Total energy = 32386.5696 kcal/mol (32360.8913 without restraints) Performing minimization step: 136. Total energy = 32298.6680 kcal/mol (32273.0889 without restraints) Performing minimization step: 137. Total energy = 32211.5629 kcal/mol (32186.0813 without restraints) Performing minimization step: 138. Total energy = 32125.2396 kcal/mol (32099.8537 without restraints) Performing minimization step: 139. Total energy = 32039.6839 kcal/mol (32014.3922 without restraints) Performing minimization step: 140. Total energy = 31954.8817 kcal/mol (31929.6824 without restraints) Performing minimization step: 141. Total energy = 31870.8191 kcal/mol (31845.7108 without restraints) Performing minimization step: 142. Total energy = 31787.4825 kcal/mol (31762.4636 without restraints) Performing minimization step: 143. Total energy = 31704.8592 kcal/mol (31679.9282 without restraints) Performing minimization step: 144. Total energy = 31622.9366 kcal/mol (31598.0921 without restraints) Performing minimization step: 145. Total energy = 31541.7023 kcal/mol (31516.9429 without restraints) Performing minimization step: 146. Total energy = 31461.1438 kcal/mol (31436.4681 without restraints) Performing minimization step: 147. Total energy = 31381.2494 kcal/mol (31356.6561 without restraints) Performing minimization step: 148. Total energy = 31302.0075 kcal/mol (31277.4951 without restraints) Performing minimization step: 149. Total energy = 31223.4073 kcal/mol (31198.9749 without restraints) Performing minimization step: 150. Total energy = 31145.4381 kcal/mol (31121.0842 without restraints) Performing minimization step: 151. Total energy = 31068.0885 kcal/mol (31043.8120 without restraints) Performing minimization step: 152. Total energy = 30991.3482 kcal/mol (30967.1476 without restraints) Performing minimization step: 153. Total energy = 30915.2072 kcal/mol (30891.0817 without restraints) Performing minimization step: 154. Total energy = 30839.6554 kcal/mol (30815.6038 without restraints) Performing minimization step: 155. Total energy = 30764.6829 kcal/mol (30740.7041 without restraints) Performing minimization step: 156. Total energy = 30690.2807 kcal/mol (30666.3735 without restraints) Performing minimization step: 157. Total energy = 30616.4390 kcal/mol (30592.6024 without restraints) Performing minimization step: 158. Total energy = 30543.1485 kcal/mol (30519.3815 without restraints) Performing minimization step: 159. Total energy = 30470.4005 kcal/mol (30446.7022 without restraints) Performing minimization step: 160. Total energy = 30398.1868 kcal/mol (30374.5561 without restraints) Performing minimization step: 161. Total energy = 30326.4985 kcal/mol (30302.9344 without restraints) Performing minimization step: 162. Total energy = 30255.3272 kcal/mol (30231.8289 without restraints) Performing minimization step: 163. Total energy = 30184.6651 kcal/mol (30161.2314 without restraints) Performing minimization step: 164. Total energy = 30114.5043 kcal/mol (30091.1347 without restraints) Performing minimization step: 165. Total energy = 30044.8367 kcal/mol (30021.5302 without restraints) Performing minimization step: 166. Total energy = 29975.6556 kcal/mol (29952.4113 without restraints) Performing minimization step: 167. Total energy = 29906.9523 kcal/mol (29883.7693 without restraints) Performing minimization step: 168. Total energy = 29838.7201 kcal/mol (29815.5977 without restraints) Performing minimization step: 169. Total energy = 29770.9519 kcal/mol (29747.8892 without restraints) Performing minimization step: 170. Total energy = 29703.6407 kcal/mol (29680.6370 without restraints) Performing minimization step: 171. Total energy = 29636.7798 kcal/mol (29613.8343 without restraints) Performing minimization step: 172. Total energy = 29570.3622 kcal/mol (29547.4741 without restraints) Performing minimization step: 173. Total energy = 29504.3818 kcal/mol (29481.5505 without restraints) Performing minimization step: 174. Total energy = 29438.8321 kcal/mol (29416.0567 without restraints) Performing minimization step: 175. Total energy = 29373.7065 kcal/mol (29350.9865 without restraints) Performing minimization step: 176. Total energy = 29308.9988 kcal/mol (29286.3334 without restraints) Performing minimization step: 177. Total energy = 29244.7033 kcal/mol (29222.0917 without restraints) Performing minimization step: 178. Total energy = 29180.8143 kcal/mol (29158.2561 without restraints) Performing minimization step: 179. Total energy = 29117.3260 kcal/mol (29094.8204 without restraints) Performing minimization step: 180. Total energy = 29054.2325 kcal/mol (29031.7789 without restraints) Performing minimization step: 181. Total energy = 28991.5283 kcal/mol (28969.1262 without restraints) Performing minimization step: 182. Total energy = 28929.2081 kcal/mol (28906.8568 without restraints) Performing minimization step: 183. Total energy = 28867.2665 kcal/mol (28844.9653 without restraints) Performing minimization step: 184. Total energy = 28805.6980 kcal/mol (28783.4464 without restraints) Performing minimization step: 185. Total energy = 28744.4978 kcal/mol (28722.2953 without restraints) Performing minimization step: 186. Total energy = 28683.6603 kcal/mol (28661.5063 without restraints) Performing minimization step: 187. Total energy = 28623.1816 kcal/mol (28601.0755 without restraints) Performing minimization step: 188. Total energy = 28563.0561 kcal/mol (28540.9974 without restraints) Performing minimization step: 189. Total energy = 28503.2796 kcal/mol (28481.2678 without restraints) Performing minimization step: 190. Total energy = 28443.8471 kcal/mol (28421.8818 without restraints) Performing minimization step: 191. Total energy = 28384.7540 kcal/mol (28362.8345 without restraints) Performing minimization step: 192. Total energy = 28325.9962 kcal/mol (28304.1220 without restraints) Performing minimization step: 193. Total energy = 28267.5692 kcal/mol (28245.7400 without restraints) Performing minimization step: 194. Total energy = 28209.4684 kcal/mol (28187.6835 without restraints) Performing minimization step: 195. Total energy = 28151.6899 kcal/mol (28129.9490 without restraints) Performing minimization step: 196. Total energy = 28094.2294 kcal/mol (28072.5320 without restraints) Performing minimization step: 197. Total energy = 28037.0827 kcal/mol (28015.4283 without restraints) Performing minimization step: 198. Total energy = 27980.2463 kcal/mol (27958.6345 without restraints) Performing minimization step: 199. Total energy = 27923.7162 kcal/mol (27902.1466 without restraints) Performing minimization step: 200. Total energy = 27867.4887 kcal/mol (27845.9608 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 201. Total energy = 27811.5590 kcal/mol (27790.0726 without restraints) Performing minimization step: 202. Total energy = 27755.9238 kcal/mol (27734.4782 without restraints) Performing minimization step: 203. Total energy = 27700.5801 kcal/mol (27679.1751 without restraints) Performing minimization step: 204. Total energy = 27645.5241 kcal/mol (27624.1590 without restraints) Performing minimization step: 205. Total energy = 27590.7520 kcal/mol (27569.4268 without restraints) Performing minimization step: 206. Total energy = 27536.2607 kcal/mol (27514.9750 without restraints) Performing minimization step: 207. Total energy = 27482.0468 kcal/mol (27460.8001 without restraints) Performing minimization step: 208. Total energy = 27428.1067 kcal/mol (27406.8986 without restraints) Performing minimization step: 209. Total energy = 27374.4374 kcal/mol (27353.2676 without restraints) Performing minimization step: 210. Total energy = 27321.0354 kcal/mol (27299.9035 without restraints) Performing minimization step: 211. Total energy = 27267.8980 kcal/mol (27246.8038 without restraints) Performing minimization step: 212. Total energy = 27215.0218 kcal/mol (27193.9649 without restraints) Performing minimization step: 213. Total energy = 27162.4038 kcal/mol (27141.3837 without restraints) Performing minimization step: 214. Total energy = 27110.0409 kcal/mol (27089.0576 without restraints) Performing minimization step: 215. Total energy = 27057.9303 kcal/mol (27036.9829 without restraints) Performing minimization step: 216. Total energy = 27006.0687 kcal/mol (26985.1574 without restraints) Performing minimization step: 217. Total energy = 26954.4540 kcal/mol (26933.5785 without restraints) Performing minimization step: 218. Total energy = 26903.0832 kcal/mol (26882.2430 without restraints) Performing minimization step: 219. Total energy = 26851.9537 kcal/mol (26831.1486 without restraints) Performing minimization step: 220. Total energy = 26801.0622 kcal/mol (26780.2918 without restraints) Performing minimization step: 221. Total energy = 26750.4063 kcal/mol (26729.6704 without restraints) Performing minimization step: 222. Total energy = 26699.9836 kcal/mol (26679.2818 without restraints) Performing minimization step: 223. Total energy = 26649.7916 kcal/mol (26629.1238 without restraints) Performing minimization step: 224. Total energy = 26599.8283 kcal/mol (26579.1942 without restraints) Performing minimization step: 225. Total energy = 26550.0903 kcal/mol (26529.4895 without restraints) Performing minimization step: 226. Total energy = 26500.5752 kcal/mol (26480.0076 without restraints) Performing minimization step: 227. Total energy = 26451.2809 kcal/mol (26430.7461 without restraints) Performing minimization step: 228. Total energy = 26402.2050 kcal/mol (26381.7029 without restraints) Performing minimization step: 229. Total energy = 26353.3457 kcal/mol (26332.8758 without restraints) Performing minimization step: 230. Total energy = 26304.6996 kcal/mol (26284.2618 without restraints) Performing minimization step: 231. Total energy = 26256.2651 kcal/mol (26235.8593 without restraints) Performing minimization step: 232. Total energy = 26208.0404 kcal/mol (26187.6663 without restraints) Performing minimization step: 233. Total energy = 26160.0228 kcal/mol (26139.6800 without restraints) Performing minimization step: 234. Total energy = 26112.2101 kcal/mol (26091.8984 without restraints) Performing minimization step: 235. Total energy = 26064.6006 kcal/mol (26044.3199 without restraints) Performing minimization step: 236. Total energy = 26017.1923 kcal/mol (25996.9424 without restraints) Performing minimization step: 237. Total energy = 25969.9828 kcal/mol (25949.7634 without restraints) Performing minimization step: 238. Total energy = 25922.9698 kcal/mol (25902.7807 without restraints) Performing minimization step: 239. Total energy = 25876.1522 kcal/mol (25855.9931 without restraints) Performing minimization step: 240. Total energy = 25829.5274 kcal/mol (25809.3982 without restraints) Performing minimization step: 241. Total energy = 25783.0937 kcal/mol (25762.9941 without restraints) Performing minimization step: 242. Total energy = 25736.8497 kcal/mol (25716.7799 without restraints) Performing minimization step: 243. Total energy = 25690.7933 kcal/mol (25670.7525 without restraints) Performing minimization step: 244. Total energy = 25644.9220 kcal/mol (25624.9103 without restraints) Performing minimization step: 245. Total energy = 25599.2349 kcal/mol (25579.2521 without restraints) Performing minimization step: 246. Total energy = 25553.7298 kcal/mol (25533.7757 without restraints) Performing minimization step: 247. Total energy = 25508.4050 kcal/mol (25488.4794 without restraints) Performing minimization step: 248. Total energy = 25463.2590 kcal/mol (25443.3617 without restraints) Performing minimization step: 249. Total energy = 25418.2901 kcal/mol (25398.4210 without restraints) Performing minimization step: 250. Total energy = 25373.4963 kcal/mol (25353.6552 without restraints) Performing minimization step: 251. Total energy = 25328.8766 kcal/mol (25309.0632 without restraints) Performing minimization step: 252. Total energy = 25284.4289 kcal/mol (25264.6432 without restraints) Performing minimization step: 253. Total energy = 25240.1518 kcal/mol (25220.3936 without restraints) Performing minimization step: 254. Total energy = 25196.0434 kcal/mol (25176.3125 without restraints) Performing minimization step: 255. Total energy = 25152.1025 kcal/mol (25132.3987 without restraints) Performing minimization step: 256. Total energy = 25108.3280 kcal/mol (25088.6512 without restraints) Performing minimization step: 257. Total energy = 25064.7177 kcal/mol (25045.0677 without restraints) Performing minimization step: 258. Total energy = 25021.2702 kcal/mol (25001.6469 without restraints) Performing minimization step: 259. Total energy = 24977.9849 kcal/mol (24958.3880 without restraints) Performing minimization step: 260. Total energy = 24934.8592 kcal/mol (24915.2886 without restraints) Performing minimization step: 261. Total energy = 24891.8916 kcal/mol (24872.3474 without restraints) Performing minimization step: 262. Total energy = 24849.0817 kcal/mol (24829.5635 without restraints) Performing minimization step: 263. Total energy = 24806.4282 kcal/mol (24786.9360 without restraints) Performing minimization step: 264. Total energy = 24763.9296 kcal/mol (24744.4632 without restraints) Performing minimization step: 265. Total energy = 24721.5841 kcal/mol (24702.1433 without restraints) Performing minimization step: 266. Total energy = 24679.3906 kcal/mol (24659.9753 without restraints) Performing minimization step: 267. Total energy = 24637.3482 kcal/mol (24617.9582 without restraints) Performing minimization step: 268. Total energy = 24595.4558 kcal/mol (24576.0909 without restraints) Performing minimization step: 269. Total energy = 24553.7110 kcal/mol (24534.3715 without restraints) Performing minimization step: 270. Total energy = 24512.1135 kcal/mol (24492.7988 without restraints) Performing minimization step: 271. Total energy = 24470.6620 kcal/mol (24451.3721 without restraints) Performing minimization step: 272. Total energy = 24429.3548 kcal/mol (24410.0897 without restraints) Performing minimization step: 273. Total energy = 24388.1914 kcal/mol (24368.9509 without restraints) Performing minimization step: 274. Total energy = 24347.1707 kcal/mol (24327.9546 without restraints) Performing minimization step: 275. Total energy = 24306.2910 kcal/mol (24287.0993 without restraints) Performing minimization step: 276. Total energy = 24265.5514 kcal/mol (24246.3841 without restraints) Performing minimization step: 277. Total energy = 24224.9512 kcal/mol (24205.8079 without restraints) Performing minimization step: 278. Total energy = 24184.4887 kcal/mol (24165.3694 without restraints) Performing minimization step: 279. Total energy = 24144.1629 kcal/mol (24125.0675 without restraints) Performing minimization step: 280. Total energy = 24103.9731 kcal/mol (24084.9015 without restraints) Performing minimization step: 281. Total energy = 24063.9181 kcal/mol (24044.8701 without restraints) Performing minimization step: 282. Total energy = 24023.9964 kcal/mol (24004.9718 without restraints) Performing minimization step: 283. Total energy = 23984.2075 kcal/mol (23965.2065 without restraints) Performing minimization step: 284. Total energy = 23944.5499 kcal/mol (23925.5722 without restraints) Performing minimization step: 285. Total energy = 23905.0236 kcal/mol (23886.0692 without restraints) Performing minimization step: 286. Total energy = 23865.6269 kcal/mol (23846.6956 without restraints) Performing minimization step: 287. Total energy = 23826.3591 kcal/mol (23807.4508 without restraints) Performing minimization step: 288. Total energy = 23787.2190 kcal/mol (23768.3336 without restraints) Performing minimization step: 289. Total energy = 23748.2058 kcal/mol (23729.3433 without restraints) Performing minimization step: 290. Total energy = 23709.3188 kcal/mol (23690.4791 without restraints) Performing minimization step: 291. Total energy = 23670.5566 kcal/mol (23651.7395 without restraints) Performing minimization step: 292. Total energy = 23631.9185 kcal/mol (23613.1240 without restraints) Performing minimization step: 293. Total energy = 23593.4043 kcal/mol (23574.6322 without restraints) Performing minimization step: 294. Total energy = 23555.0119 kcal/mol (23536.2621 without restraints) Performing minimization step: 295. Total energy = 23516.7417 kcal/mol (23498.0143 without restraints) Performing minimization step: 296. Total energy = 23478.5912 kcal/mol (23459.8859 without restraints) Performing minimization step: 297. Total energy = 23440.5607 kcal/mol (23421.8774 without restraints) Performing minimization step: 298. Total energy = 23402.6494 kcal/mol (23383.9882 without restraints) Performing minimization step: 299. Total energy = 23364.8562 kcal/mol (23346.2167 without restraints) Performing minimization step: 300. Total energy = 23327.1802 kcal/mol (23308.5628 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 301. Total energy = 23289.6212 kcal/mol (23271.0254 without restraints) Performing minimization step: 302. Total energy = 23252.1783 kcal/mol (23233.6042 without restraints) Performing minimization step: 303. Total energy = 23214.8501 kcal/mol (23196.2975 without restraints) Performing minimization step: 304. Total energy = 23177.6363 kcal/mol (23159.1052 without restraints) Performing minimization step: 305. Total energy = 23140.5361 kcal/mol (23122.0266 without restraints) Performing minimization step: 306. Total energy = 23103.5482 kcal/mol (23085.0598 without restraints) Performing minimization step: 307. Total energy = 23066.6726 kcal/mol (23048.2056 without restraints) Performing minimization step: 308. Total energy = 23029.9082 kcal/mol (23011.4623 without restraints) Performing minimization step: 309. Total energy = 22993.2544 kcal/mol (22974.8296 without restraints) Performing minimization step: 310. Total energy = 22956.7103 kcal/mol (22938.3066 without restraints) Performing minimization step: 311. Total energy = 22920.2753 kcal/mol (22901.8925 without restraints) Performing minimization step: 312. Total energy = 22883.9490 kcal/mol (22865.5871 without restraints) Performing minimization step: 313. Total energy = 22847.7305 kcal/mol (22829.3895 without restraints) Performing minimization step: 314. Total energy = 22811.6195 kcal/mol (22793.2993 without restraints) Performing minimization step: 315. Total energy = 22775.6147 kcal/mol (22757.3150 without restraints) Performing minimization step: 316. Total energy = 22739.7156 kcal/mol (22721.4366 without restraints) Performing minimization step: 317. Total energy = 22703.9215 kcal/mol (22685.6629 without restraints) Performing minimization step: 318. Total energy = 22668.2322 kcal/mol (22649.9941 without restraints) Performing minimization step: 319. Total energy = 22632.6468 kcal/mol (22614.4289 without restraints) Performing minimization step: 320. Total energy = 22597.1643 kcal/mol (22578.9670 without restraints) Performing minimization step: 321. Total energy = 22561.7845 kcal/mol (22543.6073 without restraints) Performing minimization step: 322. Total energy = 22526.5068 kcal/mol (22508.3499 without restraints) Performing minimization step: 323. Total energy = 22491.3303 kcal/mol (22473.1935 without restraints) Performing minimization step: 324. Total energy = 22456.2549 kcal/mol (22438.1381 without restraints) Performing minimization step: 325. Total energy = 22421.2797 kcal/mol (22403.1830 without restraints) Performing minimization step: 326. Total energy = 22386.4043 kcal/mol (22368.3275 without restraints) Performing minimization step: 327. Total energy = 22351.6283 kcal/mol (22333.5714 without restraints) Performing minimization step: 328. Total energy = 22316.9502 kcal/mol (22298.9131 without restraints) Performing minimization step: 329. Total energy = 22282.3708 kcal/mol (22264.3534 without restraints) Performing minimization step: 330. Total energy = 22247.8885 kcal/mol (22229.8908 without restraints) Performing minimization step: 331. Total energy = 22213.5026 kcal/mol (22195.5246 without restraints) Performing minimization step: 332. Total energy = 22179.2132 kcal/mol (22161.2547 without restraints) Performing minimization step: 333. Total energy = 22145.0200 kcal/mol (22127.0810 without restraints) Performing minimization step: 334. Total energy = 22110.9221 kcal/mol (22093.0026 without restraints) Performing minimization step: 335. Total energy = 22076.9185 kcal/mol (22059.0184 without restraints) Performing minimization step: 336. Total energy = 22043.0088 kcal/mol (22025.1280 without restraints) Performing minimization step: 337. Total energy = 22009.1928 kcal/mol (21991.3314 without restraints) Performing minimization step: 338. Total energy = 21975.4703 kcal/mol (21957.6281 without restraints) Performing minimization step: 339. Total energy = 21941.8405 kcal/mol (21924.0175 without restraints) Performing minimization step: 340. Total energy = 21908.3026 kcal/mol (21890.4987 without restraints) Performing minimization step: 341. Total energy = 21874.8569 kcal/mol (21857.0721 without restraints) Performing minimization step: 342. Total energy = 21841.5018 kcal/mol (21823.7359 without restraints) Performing minimization step: 343. Total energy = 21808.2379 kcal/mol (21790.4911 without restraints) Performing minimization step: 344. Total energy = 21775.0642 kcal/mol (21757.3364 without restraints) Performing minimization step: 345. Total energy = 21741.9802 kcal/mol (21724.2711 without restraints) Performing minimization step: 346. Total energy = 21708.9861 kcal/mol (21691.2959 without restraints) Performing minimization step: 347. Total energy = 21676.0807 kcal/mol (21658.4092 without restraints) Performing minimization step: 348. Total energy = 21643.2635 kcal/mol (21625.6108 without restraints) Performing minimization step: 349. Total energy = 21610.5346 kcal/mol (21592.9005 without restraints) Performing minimization step: 350. Total energy = 21577.8931 kcal/mol (21560.2775 without restraints) Performing minimization step: 351. Total energy = 21545.3384 kcal/mol (21527.7416 without restraints) Performing minimization step: 352. Total energy = 21512.8704 kcal/mol (21495.2921 without restraints) Performing minimization step: 353. Total energy = 21480.4889 kcal/mol (21462.9291 without restraints) Performing minimization step: 354. Total energy = 21448.1931 kcal/mol (21430.6516 without restraints) Performing minimization step: 355. Total energy = 21415.9829 kcal/mol (21398.4599 without restraints) Performing minimization step: 356. Total energy = 21383.8577 kcal/mol (21366.3529 without restraints) Performing minimization step: 357. Total energy = 21351.8171 kcal/mol (21334.3307 without restraints) Performing minimization step: 358. Total energy = 21319.8610 kcal/mol (21302.3929 without restraints) Performing minimization step: 359. Total energy = 21287.9884 kcal/mol (21270.5384 without restraints) Performing minimization step: 360. Total energy = 21256.1994 kcal/mol (21238.7678 without restraints) Performing minimization step: 361. Total energy = 21224.4931 kcal/mol (21207.0794 without restraints) Performing minimization step: 362. Total energy = 21192.8702 kcal/mol (21175.4746 without restraints) Performing minimization step: 363. Total energy = 21161.3289 kcal/mol (21143.9514 without restraints) Performing minimization step: 364. Total energy = 21129.8696 kcal/mol (21112.5100 without restraints) Performing minimization step: 365. Total energy = 21098.4915 kcal/mol (21081.1499 without restraints) Performing minimization step: 366. Total energy = 21067.1944 kcal/mol (21049.8706 without restraints) Performing minimization step: 367. Total energy = 21035.9784 kcal/mol (21018.6725 without restraints) Performing minimization step: 368. Total energy = 21004.8428 kcal/mol (20987.5547 without restraints) Performing minimization step: 369. Total energy = 20973.7869 kcal/mol (20956.5166 without restraints) Performing minimization step: 370. Total energy = 20942.8113 kcal/mol (20925.5587 without restraints) Performing minimization step: 371. Total energy = 20911.9146 kcal/mol (20894.6798 without restraints) Performing minimization step: 372. Total energy = 20881.0970 kcal/mol (20863.8798 without restraints) Performing minimization step: 373. Total energy = 20850.3576 kcal/mol (20833.1578 without restraints) Performing minimization step: 374. Total energy = 20819.6960 kcal/mol (20802.5140 without restraints) Performing minimization step: 375. Total energy = 20789.1128 kcal/mol (20771.9482 without restraints) Performing minimization step: 376. Total energy = 20758.6075 kcal/mol (20741.4606 without restraints) Performing minimization step: 377. Total energy = 20728.1794 kcal/mol (20711.0498 without restraints) Performing minimization step: 378. Total energy = 20697.8277 kcal/mol (20680.7155 without restraints) Performing minimization step: 379. Total energy = 20667.5530 kcal/mol (20650.4583 without restraints) Performing minimization step: 380. Total energy = 20637.3549 kcal/mol (20620.2775 without restraints) Performing minimization step: 381. Total energy = 20607.2321 kcal/mol (20590.1720 without restraints) Performing minimization step: 382. Total energy = 20577.1855 kcal/mol (20560.1428 without restraints) Performing minimization step: 383. Total energy = 20547.2143 kcal/mol (20530.1887 without restraints) Performing minimization step: 384. Total energy = 20517.3179 kcal/mol (20500.3097 without restraints) Performing minimization step: 385. Total energy = 20487.4961 kcal/mol (20470.5048 without restraints) Performing minimization step: 386. Total energy = 20457.7484 kcal/mol (20440.7743 without restraints) Performing minimization step: 387. Total energy = 20428.0750 kcal/mol (20411.1180 without restraints) Performing minimization step: 388. Total energy = 20398.4744 kcal/mol (20381.5345 without restraints) Performing minimization step: 389. Total energy = 20368.9486 kcal/mol (20352.0257 without restraints) Performing minimization step: 390. Total energy = 20339.4958 kcal/mol (20322.5899 without restraints) Performing minimization step: 391. Total energy = 20310.1155 kcal/mol (20293.2265 without restraints) Performing minimization step: 392. Total energy = 20280.8082 kcal/mol (20263.9361 without restraints) Performing minimization step: 393. Total energy = 20251.5735 kcal/mol (20234.7183 without restraints) Performing minimization step: 394. Total energy = 20222.4108 kcal/mol (20205.5727 without restraints) Performing minimization step: 395. Total energy = 20193.3201 kcal/mol (20176.4986 without restraints) Performing minimization step: 396. Total energy = 20164.3007 kcal/mol (20147.4960 without restraints) Performing minimization step: 397. Total energy = 20135.3524 kcal/mol (20118.5643 without restraints) Performing minimization step: 398. Total energy = 20106.4750 kcal/mol (20089.7036 without restraints) Performing minimization step: 399. Total energy = 20077.6685 kcal/mol (20060.9137 without restraints) Performing minimization step: 400. Total energy = 20048.9320 kcal/mol (20032.1941 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 401. Total energy = 20020.2660 kcal/mol (20003.5447 without restraints) Performing minimization step: 402. Total energy = 19991.6699 kcal/mol (19974.9651 without restraints) Performing minimization step: 403. Total energy = 19963.1431 kcal/mol (19946.4549 without restraints) Performing minimization step: 404. Total energy = 19934.6857 kcal/mol (19918.0140 without restraints) Performing minimization step: 405. Total energy = 19906.2979 kcal/mol (19889.6426 without restraints) Performing minimization step: 406. Total energy = 19877.9785 kcal/mol (19861.3397 without restraints) Performing minimization step: 407. Total energy = 19849.7275 kcal/mol (19833.1050 without restraints) Performing minimization step: 408. Total energy = 19821.5449 kcal/mol (19804.9389 without restraints) Performing minimization step: 409. Total energy = 19793.4305 kcal/mol (19776.8409 without restraints) Performing minimization step: 410. Total energy = 19765.3841 kcal/mol (19748.8108 without restraints) Performing minimization step: 411. Total energy = 19737.4051 kcal/mol (19720.8481 without restraints) Performing minimization step: 412. Total energy = 19709.4932 kcal/mol (19692.9525 without restraints) Performing minimization step: 413. Total energy = 19681.6489 kcal/mol (19665.1244 without restraints) Performing minimization step: 414. Total energy = 19653.8710 kcal/mol (19637.3627 without restraints) Performing minimization step: 415. Total energy = 19626.1596 kcal/mol (19609.6676 without restraints) Performing minimization step: 416. Total energy = 19598.5150 kcal/mol (19582.0391 without restraints) Performing minimization step: 417. Total energy = 19570.9370 kcal/mol (19554.4772 without restraints) Performing minimization step: 418. Total energy = 19543.4250 kcal/mol (19526.9812 without restraints) Performing minimization step: 419. Total energy = 19515.9783 kcal/mol (19499.5508 without restraints) Performing minimization step: 420. Total energy = 19488.5975 kcal/mol (19472.1859 without restraints) Performing minimization step: 421. Total energy = 19461.2819 kcal/mol (19444.8861 without restraints) Performing minimization step: 422. Total energy = 19434.0305 kcal/mol (19417.6508 without restraints) Performing minimization step: 423. Total energy = 19406.8443 kcal/mol (19390.4804 without restraints) Performing minimization step: 424. Total energy = 19379.7236 kcal/mol (19363.3757 without restraints) Performing minimization step: 425. Total energy = 19352.6664 kcal/mol (19336.3344 without restraints) Performing minimization step: 426. Total energy = 19325.6740 kcal/mol (19309.3579 without restraints) Performing minimization step: 427. Total energy = 19298.7450 kcal/mol (19282.4447 without restraints) Performing minimization step: 428. Total energy = 19271.8796 kcal/mol (19255.5951 without restraints) Performing minimization step: 429. Total energy = 19245.0778 kcal/mol (19228.8091 without restraints) Performing minimization step: 430. Total energy = 19218.3393 kcal/mol (19202.0863 without restraints) Performing minimization step: 431. Total energy = 19191.6639 kcal/mol (19175.4267 without restraints) Performing minimization step: 432. Total energy = 19165.0516 kcal/mol (19148.8301 without restraints) Performing minimization step: 433. Total energy = 19138.5017 kcal/mol (19122.2959 without restraints) Performing minimization step: 434. Total energy = 19112.0147 kcal/mol (19095.8245 without restraints) Performing minimization step: 435. Total energy = 19085.5898 kcal/mol (19069.4149 without restraints) Performing minimization step: 436. Total energy = 19059.2260 kcal/mol (19043.0669 without restraints) Performing minimization step: 437. Total energy = 19032.9254 kcal/mol (19016.7818 without restraints) Performing minimization step: 438. Total energy = 19006.6860 kcal/mol (18990.5580 without restraints) Performing minimization step: 439. Total energy = 18980.5083 kcal/mol (18964.3957 without restraints) Performing minimization step: 440. Total energy = 18954.3915 kcal/mol (18938.2944 without restraints) Performing minimization step: 441. Total energy = 18928.3357 kcal/mol (18912.2541 without restraints) Performing minimization step: 442. Total energy = 18902.3412 kcal/mol (18886.2750 without restraints) Performing minimization step: 443. Total energy = 18876.4073 kcal/mol (18860.3565 without restraints) Performing minimization step: 444. Total energy = 18850.5342 kcal/mol (18834.4987 without restraints) Performing minimization step: 445. Total energy = 18824.7212 kcal/mol (18808.7011 without restraints) Performing minimization step: 446. Total energy = 18798.9683 kcal/mol (18782.9635 without restraints) Performing minimization step: 447. Total energy = 18773.2750 kcal/mol (18757.2855 without restraints) Performing minimization step: 448. Total energy = 18747.6419 kcal/mol (18731.6676 without restraints) Performing minimization step: 449. Total energy = 18722.0683 kcal/mol (18706.1092 without restraints) Performing minimization step: 450. Total energy = 18696.5537 kcal/mol (18680.6099 without restraints) Performing minimization step: 451. Total energy = 18671.0988 kcal/mol (18655.1702 without restraints) Performing minimization step: 452. Total energy = 18645.7027 kcal/mol (18629.7892 without restraints) Performing minimization step: 453. Total energy = 18620.3664 kcal/mol (18604.4681 without restraints) Performing minimization step: 454. Total energy = 18595.0882 kcal/mol (18579.2049 without restraints) Performing minimization step: 455. Total energy = 18569.8685 kcal/mol (18554.0003 without restraints) Performing minimization step: 456. Total energy = 18544.7070 kcal/mol (18528.8538 without restraints) Performing minimization step: 457. Total energy = 18519.6041 kcal/mol (18503.7660 without restraints) Performing minimization step: 458. Total energy = 18494.5588 kcal/mol (18478.7357 without restraints) Performing minimization step: 459. Total energy = 18469.5713 kcal/mol (18453.7632 without restraints) Performing minimization step: 460. Total energy = 18444.6420 kcal/mol (18428.8488 without restraints) Performing minimization step: 461. Total energy = 18419.7694 kcal/mol (18403.9911 without restraints) Performing minimization step: 462. Total energy = 18394.9543 kcal/mol (18379.1910 without restraints) Performing minimization step: 463. Total energy = 18370.1966 kcal/mol (18354.4480 without restraints) Performing minimization step: 464. Total energy = 18345.4953 kcal/mol (18329.7615 without restraints) Performing minimization step: 465. Total energy = 18320.8511 kcal/mol (18305.1323 without restraints) Performing minimization step: 466. Total energy = 18296.2636 kcal/mol (18280.5596 without restraints) Performing minimization step: 467. Total energy = 18271.7334 kcal/mol (18256.0442 without restraints) Performing minimization step: 468. Total energy = 18247.2590 kcal/mol (18231.5846 without restraints) Performing minimization step: 469. Total energy = 18222.8401 kcal/mol (18207.1805 without restraints) Performing minimization step: 470. Total energy = 18198.4777 kcal/mol (18182.8327 without restraints) Performing minimization step: 471. Total energy = 18174.1710 kcal/mol (18158.5406 without restraints) Performing minimization step: 472. Total energy = 18149.9200 kcal/mol (18134.3043 without restraints) Performing minimization step: 473. Total energy = 18125.7246 kcal/mol (18110.1235 without restraints) Performing minimization step: 474. Total energy = 18101.5848 kcal/mol (18085.9983 without restraints) Performing minimization step: 475. Total energy = 18077.4999 kcal/mol (18061.9280 without restraints) Performing minimization step: 476. Total energy = 18053.4702 kcal/mol (18037.9129 without restraints) Performing minimization step: 477. Total energy = 18029.4954 kcal/mol (18013.9526 without restraints) Performing minimization step: 478. Total energy = 18005.5746 kcal/mol (17990.0463 without restraints) Performing minimization step: 479. Total energy = 17981.7091 kcal/mol (17966.1954 without restraints) Performing minimization step: 480. Total energy = 17957.8981 kcal/mol (17942.3988 without restraints) Performing minimization step: 481. Total energy = 17934.1412 kcal/mol (17918.6563 without restraints) Performing minimization step: 482. Total energy = 17910.4383 kcal/mol (17894.9679 without restraints) Performing minimization step: 483. Total energy = 17886.7895 kcal/mol (17871.3334 without restraints) Performing minimization step: 484. Total energy = 17863.1945 kcal/mol (17847.7528 without restraints) Performing minimization step: 485. Total energy = 17839.6531 kcal/mol (17824.2257 without restraints) Performing minimization step: 486. Total energy = 17816.1653 kcal/mol (17800.7523 without restraints) Performing minimization step: 487. Total energy = 17792.7306 kcal/mol (17777.3317 without restraints) Performing minimization step: 488. Total energy = 17769.3493 kcal/mol (17753.9648 without restraints) Performing minimization step: 489. Total energy = 17746.0212 kcal/mol (17730.6510 without restraints) Performing minimization step: 490. Total energy = 17722.7461 kcal/mol (17707.3900 without restraints) Performing minimization step: 491. Total energy = 17699.5239 kcal/mol (17684.1823 without restraints) Performing minimization step: 492. Total energy = 17676.3542 kcal/mol (17661.0266 without restraints) Performing minimization step: 493. Total energy = 17653.2370 kcal/mol (17637.9236 without restraints) Performing minimization step: 494. Total energy = 17630.1722 kcal/mol (17614.8730 without restraints) Performing minimization step: 495. Total energy = 17607.1599 kcal/mol (17591.8747 without restraints) Performing minimization step: 496. Total energy = 17584.1998 kcal/mol (17568.9288 without restraints) Performing minimization step: 497. Total energy = 17561.2922 kcal/mol (17546.0352 without restraints) Performing minimization step: 498. Total energy = 17538.4364 kcal/mol (17523.1934 without restraints) Performing minimization step: 499. Total energy = 17515.6320 kcal/mol (17500.4030 without restraints) Performing minimization step: 500. Total energy = 17492.8786 kcal/mol (17477.6636 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 501. Total energy = 17470.1768 kcal/mol (17454.9758 without restraints) Performing minimization step: 502. Total energy = 17447.5262 kcal/mol (17432.3390 without restraints) Performing minimization step: 503. Total energy = 17424.9268 kcal/mol (17409.7538 without restraints) Performing minimization step: 504. Total energy = 17402.3787 kcal/mol (17387.2197 without restraints) Performing minimization step: 505. Total energy = 17379.8814 kcal/mol (17364.7361 without restraints) Performing minimization step: 506. Total energy = 17357.4347 kcal/mol (17342.3032 without restraints) Performing minimization step: 507. Total energy = 17335.0384 kcal/mol (17319.9208 without restraints) Performing minimization step: 508. Total energy = 17312.6928 kcal/mol (17297.5890 without restraints) Performing minimization step: 509. Total energy = 17290.3975 kcal/mol (17275.3075 without restraints) Performing minimization step: 510. Total energy = 17268.1527 kcal/mol (17253.0765 without restraints) Performing minimization step: 511. Total energy = 17245.9577 kcal/mol (17230.8952 without restraints) Performing minimization step: 512. Total energy = 17223.8131 kcal/mol (17208.7643 without restraints) Performing minimization step: 513. Total energy = 17201.7180 kcal/mol (17186.6829 without restraints) Performing minimization step: 514. Total energy = 17179.6727 kcal/mol (17164.6513 without restraints) Performing minimization step: 515. Total energy = 17157.6770 kcal/mol (17142.6693 without restraints) Performing minimization step: 516. Total energy = 17135.7307 kcal/mol (17120.7366 without restraints) Performing minimization step: 517. Total energy = 17113.8335 kcal/mol (17098.8530 without restraints) Performing minimization step: 518. Total energy = 17091.9854 kcal/mol (17077.0185 without restraints) Performing minimization step: 519. Total energy = 17070.1865 kcal/mol (17055.2332 without restraints) Performing minimization step: 520. Total energy = 17048.4367 kcal/mol (17033.4970 without restraints) Performing minimization step: 521. Total energy = 17026.7356 kcal/mol (17011.8094 without restraints) Performing minimization step: 522. Total energy = 17005.0832 kcal/mol (16990.1705 without restraints) Performing minimization step: 523. Total energy = 16983.4796 kcal/mol (16968.5804 without restraints) Performing minimization step: 524. Total energy = 16961.9243 kcal/mol (16947.0385 without restraints) Performing minimization step: 525. Total energy = 16940.4174 kcal/mol (16925.5450 without restraints) Performing minimization step: 526. Total energy = 16918.9588 kcal/mol (16904.0998 without restraints) Performing minimization step: 527. Total energy = 16897.5477 kcal/mol (16882.7021 without restraints) Performing minimization step: 528. Total energy = 16876.1848 kcal/mol (16861.3526 without restraints) Performing minimization step: 529. Total energy = 16854.8695 kcal/mol (16840.0506 without restraints) Performing minimization step: 530. Total energy = 16833.6022 kcal/mol (16818.7968 without restraints) Performing minimization step: 531. Total energy = 16812.3826 kcal/mol (16797.5903 without restraints) Performing minimization step: 532. Total energy = 16791.2107 kcal/mol (16776.4317 without restraints) Performing minimization step: 533. Total energy = 16770.0858 kcal/mol (16755.3201 without restraints) Performing minimization step: 534. Total energy = 16749.0083 kcal/mol (16734.2560 without restraints) Performing minimization step: 535. Total energy = 16727.9779 kcal/mol (16713.2387 without restraints) Performing minimization step: 536. Total energy = 16706.9943 kcal/mol (16692.2683 without restraints) Performing minimization step: 537. Total energy = 16686.0577 kcal/mol (16671.3447 without restraints) Performing minimization step: 538. Total energy = 16665.1682 kcal/mol (16650.4685 without restraints) Performing minimization step: 539. Total energy = 16644.3250 kcal/mol (16629.6384 without restraints) Performing minimization step: 540. Total energy = 16623.5283 kcal/mol (16608.8549 without restraints) Performing minimization step: 541. Total energy = 16602.7783 kcal/mol (16588.1179 without restraints) Performing minimization step: 542. Total energy = 16582.0743 kcal/mol (16567.4269 without restraints) Performing minimization step: 543. Total energy = 16561.4163 kcal/mol (16546.7819 without restraints) Performing minimization step: 544. Total energy = 16540.8043 kcal/mol (16526.1830 without restraints) Performing minimization step: 545. Total energy = 16520.2388 kcal/mol (16505.6305 without restraints) Performing minimization step: 546. Total energy = 16499.7187 kcal/mol (16485.1233 without restraints) Performing minimization step: 547. Total energy = 16479.2439 kcal/mol (16464.6616 without restraints) Performing minimization step: 548. Total energy = 16458.8156 kcal/mol (16444.2463 without restraints) Performing minimization step: 549. Total energy = 16438.4326 kcal/mol (16423.8761 without restraints) Performing minimization step: 550. Total energy = 16418.0953 kcal/mol (16403.5517 without restraints) Performing minimization step: 551. Total energy = 16397.8029 kcal/mol (16383.2721 without restraints) Performing minimization step: 552. Total energy = 16377.5556 kcal/mol (16363.0377 without restraints) Performing minimization step: 553. Total energy = 16357.3533 kcal/mol (16342.8482 without restraints) Performing minimization step: 554. Total energy = 16337.1962 kcal/mol (16322.7039 without restraints) Performing minimization step: 555. Total energy = 16317.0837 kcal/mol (16302.6042 without restraints) Performing minimization step: 556. Total energy = 16297.0161 kcal/mol (16282.5495 without restraints) Performing minimization step: 557. Total energy = 16276.9931 kcal/mol (16262.5391 without restraints) Performing minimization step: 558. Total energy = 16257.0146 kcal/mol (16242.5733 without restraints) Performing minimization step: 559. Total energy = 16237.0801 kcal/mol (16222.6515 without restraints) Performing minimization step: 560. Total energy = 16217.1903 kcal/mol (16202.7744 without restraints) Performing minimization step: 561. Total energy = 16197.3444 kcal/mol (16182.9412 without restraints) Performing minimization step: 562. Total energy = 16177.5422 kcal/mol (16163.1515 without restraints) Performing minimization step: 563. Total energy = 16157.7847 kcal/mol (16143.4067 without restraints) Performing minimization step: 564. Total energy = 16138.0708 kcal/mol (16123.7053 without restraints) Performing minimization step: 565. Total energy = 16118.4003 kcal/mol (16104.0473 without restraints) Performing minimization step: 566. Total energy = 16098.7734 kcal/mol (16084.4331 without restraints) Performing minimization step: 567. Total energy = 16079.1904 kcal/mol (16064.8626 without restraints) Performing minimization step: 568. Total energy = 16059.6508 kcal/mol (16045.3354 without restraints) Performing minimization step: 569. Total energy = 16040.1552 kcal/mol (16025.8524 without restraints) Performing minimization step: 570. Total energy = 16020.7021 kcal/mol (16006.4117 without restraints) Performing minimization step: 571. Total energy = 16001.2923 kcal/mol (15987.0143 without restraints) Performing minimization step: 572. Total energy = 15981.9253 kcal/mol (15967.6598 without restraints) Performing minimization step: 573. Total energy = 15962.6011 kcal/mol (15948.3480 without restraints) Performing minimization step: 574. Total energy = 15943.3199 kcal/mol (15929.0791 without restraints) Performing minimization step: 575. Total energy = 15924.0810 kcal/mol (15909.8527 without restraints) Performing minimization step: 576. Total energy = 15904.8853 kcal/mol (15890.6692 without restraints) Performing minimization step: 577. Total energy = 15885.7317 kcal/mol (15871.5281 without restraints) Performing minimization step: 578. Total energy = 15866.6208 kcal/mol (15852.4293 without restraints) Performing minimization step: 579. Total energy = 15847.5519 kcal/mol (15833.3726 without restraints) Performing minimization step: 580. Total energy = 15828.5251 kcal/mol (15814.3582 without restraints) Performing minimization step: 581. Total energy = 15809.5403 kcal/mol (15795.3854 without restraints) Performing minimization step: 582. Total energy = 15790.5979 kcal/mol (15776.4553 without restraints) Performing minimization step: 583. Total energy = 15771.6972 kcal/mol (15757.5668 without restraints) Performing minimization step: 584. Total energy = 15752.8379 kcal/mol (15738.7197 without restraints) Performing minimization step: 585. Total energy = 15734.0204 kcal/mol (15719.9144 without restraints) Performing minimization step: 586. Total energy = 15715.2446 kcal/mol (15701.1507 without restraints) Performing minimization step: 587. Total energy = 15696.5100 kcal/mol (15682.4281 without restraints) Performing minimization step: 588. Total energy = 15677.8172 kcal/mol (15663.7477 without restraints) Performing minimization step: 589. Total energy = 15659.1658 kcal/mol (15645.1081 without restraints) Performing minimization step: 590. Total energy = 15640.5551 kcal/mol (15626.5094 without restraints) Performing minimization step: 591. Total energy = 15621.9855 kcal/mol (15607.9518 without restraints) Performing minimization step: 592. Total energy = 15603.4568 kcal/mol (15589.4351 without restraints) Performing minimization step: 593. Total energy = 15584.9691 kcal/mol (15570.9594 without restraints) Performing minimization step: 594. Total energy = 15566.5218 kcal/mol (15552.5240 without restraints) Performing minimization step: 595. Total energy = 15548.1150 kcal/mol (15534.1292 without restraints) Performing minimization step: 596. Total energy = 15529.7495 kcal/mol (15515.7755 without restraints) Performing minimization step: 597. Total energy = 15511.4242 kcal/mol (15497.4621 without restraints) Performing minimization step: 598. Total energy = 15493.1392 kcal/mol (15479.1891 without restraints) Performing minimization step: 599. Total energy = 15474.8943 kcal/mol (15460.9560 without restraints) Performing minimization step: 600. Total energy = 15456.6896 kcal/mol (15442.7631 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 601. Total energy = 15438.5247 kcal/mol (15424.6100 without restraints) Performing minimization step: 602. Total energy = 15420.3997 kcal/mol (15406.4968 without restraints) Performing minimization step: 603. Total energy = 15402.3151 kcal/mol (15388.4238 without restraints) Performing minimization step: 604. Total energy = 15384.2703 kcal/mol (15370.3909 without restraints) Performing minimization step: 605. Total energy = 15366.2652 kcal/mol (15352.3975 without restraints) Performing minimization step: 606. Total energy = 15348.2994 kcal/mol (15334.4434 without restraints) Performing minimization step: 607. Total energy = 15330.3733 kcal/mol (15316.5290 without restraints) Performing minimization step: 608. Total energy = 15312.4861 kcal/mol (15298.6535 without restraints) Performing minimization step: 609. Total energy = 15294.6386 kcal/mol (15280.8174 without restraints) Performing minimization step: 610. Total energy = 15276.8297 kcal/mol (15263.0202 without restraints) Performing minimization step: 611. Total energy = 15259.0603 kcal/mol (15245.2624 without restraints) Performing minimization step: 612. Total energy = 15241.3296 kcal/mol (15227.5434 without restraints) Performing minimization step: 613. Total energy = 15223.6388 kcal/mol (15209.8641 without restraints) Performing minimization step: 614. Total energy = 15205.9860 kcal/mol (15192.2228 without restraints) Performing minimization step: 615. Total energy = 15188.3720 kcal/mol (15174.6203 without restraints) Performing minimization step: 616. Total energy = 15170.7967 kcal/mol (15157.0565 without restraints) Performing minimization step: 617. Total energy = 15153.2598 kcal/mol (15139.5311 without restraints) Performing minimization step: 618. Total energy = 15135.7613 kcal/mol (15122.0442 without restraints) Performing minimization step: 619. Total energy = 15118.3015 kcal/mol (15104.5956 without restraints) Performing minimization step: 620. Total energy = 15100.8798 kcal/mol (15087.1853 without restraints) Performing minimization step: 621. Total energy = 15083.4963 kcal/mol (15069.8132 without restraints) Performing minimization step: 622. Total energy = 15066.1507 kcal/mol (15052.4790 without restraints) Performing minimization step: 623. Total energy = 15048.8427 kcal/mol (15035.1823 without restraints) Performing minimization step: 624. Total energy = 15031.5726 kcal/mol (15017.9235 without restraints) Performing minimization step: 625. Total energy = 15014.3401 kcal/mol (15000.7023 without restraints) Performing minimization step: 626. Total energy = 14997.1450 kcal/mol (14983.5186 without restraints) Performing minimization step: 627. Total energy = 14979.9877 kcal/mol (14966.3724 without restraints) Performing minimization step: 628. Total energy = 14962.8679 kcal/mol (14949.2639 without restraints) Performing minimization step: 629. Total energy = 14945.7857 kcal/mol (14932.1929 without restraints) Performing minimization step: 630. Total energy = 14928.7414 kcal/mol (14915.1598 without restraints) Performing minimization step: 631. Total energy = 14911.7341 kcal/mol (14898.1637 without restraints) Performing minimization step: 632. Total energy = 14894.7636 kcal/mol (14881.2044 without restraints) Performing minimization step: 633. Total energy = 14877.8301 kcal/mol (14864.2820 without restraints) Performing minimization step: 634. Total energy = 14860.9330 kcal/mol (14847.3961 without restraints) Performing minimization step: 635. Total energy = 14844.0733 kcal/mol (14830.5474 without restraints) Performing minimization step: 636. Total energy = 14827.2501 kcal/mol (14813.7352 without restraints) Performing minimization step: 637. Total energy = 14810.4640 kcal/mol (14796.9602 without restraints) Performing minimization step: 638. Total energy = 14793.7143 kcal/mol (14780.2216 without restraints) Performing minimization step: 639. Total energy = 14777.0006 kcal/mol (14763.5189 without restraints) Performing minimization step: 640. Total energy = 14760.3239 kcal/mol (14746.8531 without restraints) Performing minimization step: 641. Total energy = 14743.6834 kcal/mol (14730.2236 without restraints) Performing minimization step: 642. Total energy = 14727.0790 kcal/mol (14713.6302 without restraints) Performing minimization step: 643. Total energy = 14710.5108 kcal/mol (14697.0729 without restraints) Performing minimization step: 644. Total energy = 14693.9784 kcal/mol (14680.5514 without restraints) Performing minimization step: 645. Total energy = 14677.4819 kcal/mol (14664.0658 without restraints) Performing minimization step: 646. Total energy = 14661.0211 kcal/mol (14647.6158 without restraints) Performing minimization step: 647. Total energy = 14644.5958 kcal/mol (14631.2014 without restraints) Performing minimization step: 648. Total energy = 14628.2067 kcal/mol (14614.8232 without restraints) Performing minimization step: 649. Total energy = 14611.8530 kcal/mol (14598.4802 without restraints) Performing minimization step: 650. Total energy = 14595.5347 kcal/mol (14582.1727 without restraints) Performing minimization step: 651. Total energy = 14579.2522 kcal/mol (14565.9011 without restraints) Performing minimization step: 652. Total energy = 14563.0047 kcal/mol (14549.6644 without restraints) Performing minimization step: 653. Total energy = 14546.7926 kcal/mol (14533.4629 without restraints) Performing minimization step: 654. Total energy = 14530.6159 kcal/mol (14517.2970 without restraints) Performing minimization step: 655. Total energy = 14514.4741 kcal/mol (14501.1658 without restraints) Performing minimization step: 656. Total energy = 14498.3666 kcal/mol (14485.0689 without restraints) Performing minimization step: 657. Total energy = 14482.2946 kcal/mol (14469.0077 without restraints) Performing minimization step: 658. Total energy = 14466.2570 kcal/mol (14452.9805 without restraints) Performing minimization step: 659. Total energy = 14450.2545 kcal/mol (14436.9887 without restraints) Performing minimization step: 660. Total energy = 14434.2863 kcal/mol (14421.0311 without restraints) Performing minimization step: 661. Total energy = 14418.3524 kcal/mol (14405.1078 without restraints) Performing minimization step: 662. Total energy = 14402.4531 kcal/mol (14389.2192 without restraints) Performing minimization step: 663. Total energy = 14386.5882 kcal/mol (14373.3646 without restraints) Performing minimization step: 664. Total energy = 14370.7577 kcal/mol (14357.5446 without restraints) Performing minimization step: 665. Total energy = 14354.9611 kcal/mol (14341.7585 without restraints) Performing minimization step: 666. Total energy = 14339.1982 kcal/mol (14326.0060 without restraints) Performing minimization step: 667. Total energy = 14323.4695 kcal/mol (14310.2877 without restraints) Performing minimization step: 668. Total energy = 14307.7748 kcal/mol (14294.6034 without restraints) Performing minimization step: 669. Total energy = 14292.1137 kcal/mol (14278.9528 without restraints) Performing minimization step: 670. Total energy = 14276.4865 kcal/mol (14263.3360 without restraints) Performing minimization step: 671. Total energy = 14260.8931 kcal/mol (14247.7530 without restraints) Performing minimization step: 672. Total energy = 14245.3334 kcal/mol (14232.2038 without restraints) Performing minimization step: 673. Total energy = 14229.8070 kcal/mol (14216.6875 without restraints) Performing minimization step: 674. Total energy = 14214.3138 kcal/mol (14201.2045 without restraints) Performing minimization step: 675. Total energy = 14198.8538 kcal/mol (14185.7549 without restraints) Performing minimization step: 676. Total energy = 14183.4270 kcal/mol (14170.3382 without restraints) Performing minimization step: 677. Total energy = 14168.0331 kcal/mol (14154.9546 without restraints) Performing minimization step: 678. Total energy = 14152.6725 kcal/mol (14139.6042 without restraints) Performing minimization step: 679. Total energy = 14137.3448 kcal/mol (14124.2867 without restraints) Performing minimization step: 680. Total energy = 14122.0500 kcal/mol (14109.0021 without restraints) Performing minimization step: 681. Total energy = 14106.7879 kcal/mol (14093.7502 without restraints) Performing minimization step: 682. Total energy = 14091.5585 kcal/mol (14078.5309 without restraints) Performing minimization step: 683. Total energy = 14076.3614 kcal/mol (14063.3439 without restraints) Performing minimization step: 684. Total energy = 14061.1972 kcal/mol (14048.1898 without restraints) Performing minimization step: 685. Total energy = 14046.0654 kcal/mol (14033.0680 without restraints) Performing minimization step: 686. Total energy = 14030.9658 kcal/mol (14017.9784 without restraints) Performing minimization step: 687. Total energy = 14015.8980 kcal/mol (14002.9206 without restraints) Performing minimization step: 688. Total energy = 14000.8628 kcal/mol (13987.8956 without restraints) Performing minimization step: 689. Total energy = 13985.8598 kcal/mol (13972.9026 without restraints) Performing minimization step: 690. Total energy = 13970.8889 kcal/mol (13957.9417 without restraints) Performing minimization step: 691. Total energy = 13955.9501 kcal/mol (13943.0129 without restraints) Performing minimization step: 692. Total energy = 13941.0430 kcal/mol (13928.1157 without restraints) Performing minimization step: 693. Total energy = 13926.1676 kcal/mol (13913.2502 without restraints) Performing minimization step: 694. Total energy = 13911.3243 kcal/mol (13898.4168 without restraints) Performing minimization step: 695. Total energy = 13896.5122 kcal/mol (13883.6146 without restraints) Performing minimization step: 696. Total energy = 13881.7320 kcal/mol (13868.8445 without restraints) Performing minimization step: 697. Total energy = 13866.9830 kcal/mol (13854.1051 without restraints) Performing minimization step: 698. Total energy = 13852.2653 kcal/mol (13839.3973 without restraints) Performing minimization step: 699. Total energy = 13837.5790 kcal/mol (13824.7207 without restraints) Performing minimization step: 700. Total energy = 13822.9239 kcal/mol (13810.0756 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 701. Total energy = 13808.2997 kcal/mol (13795.4610 without restraints) Performing minimization step: 702. Total energy = 13793.7061 kcal/mol (13780.8772 without restraints) Performing minimization step: 703. Total energy = 13779.1442 kcal/mol (13766.3249 without restraints) Performing minimization step: 704. Total energy = 13764.6128 kcal/mol (13751.8034 without restraints) Performing minimization step: 705. Total energy = 13750.1122 kcal/mol (13737.3124 without restraints) Performing minimization step: 706. Total energy = 13735.6420 kcal/mol (13722.8518 without restraints) Performing minimization step: 707. Total energy = 13721.2028 kcal/mol (13708.4223 without restraints) Performing minimization step: 708. Total energy = 13706.7939 kcal/mol (13694.0230 without restraints) Performing minimization step: 709. Total energy = 13692.4155 kcal/mol (13679.6542 without restraints) Performing minimization step: 710. Total energy = 13678.0670 kcal/mol (13665.3153 without restraints) Performing minimization step: 711. Total energy = 13663.7497 kcal/mol (13651.0075 without restraints) Performing minimization step: 712. Total energy = 13649.4622 kcal/mol (13636.7296 without restraints) Performing minimization step: 713. Total energy = 13635.2045 kcal/mol (13622.4814 without restraints) Performing minimization step: 714. Total energy = 13620.9774 kcal/mol (13608.2638 without restraints) Performing minimization step: 715. Total energy = 13606.7799 kcal/mol (13594.0758 without restraints) Performing minimization step: 716. Total energy = 13592.6124 kcal/mol (13579.9179 without restraints) Performing minimization step: 717. Total energy = 13578.4742 kcal/mol (13565.7890 without restraints) Performing minimization step: 718. Total energy = 13564.3659 kcal/mol (13551.6901 without restraints) Performing minimization step: 719. Total energy = 13550.2871 kcal/mol (13537.6209 without restraints) Performing minimization step: 720. Total energy = 13536.2382 kcal/mol (13523.5812 without restraints) Performing minimization step: 721. Total energy = 13522.2186 kcal/mol (13509.5710 without restraints) Performing minimization step: 722. Total energy = 13508.2285 kcal/mol (13495.5903 without restraints) Performing minimization step: 723. Total energy = 13494.2673 kcal/mol (13481.6383 without restraints) Performing minimization step: 724. Total energy = 13480.3357 kcal/mol (13467.7162 without restraints) Performing minimization step: 725. Total energy = 13466.4335 kcal/mol (13453.8233 without restraints) Performing minimization step: 726. Total energy = 13452.5598 kcal/mol (13439.9589 without restraints) Performing minimization step: 727. Total energy = 13438.7156 kcal/mol (13426.1240 without restraints) Performing minimization step: 728. Total energy = 13424.9004 kcal/mol (13412.3180 without restraints) Performing minimization step: 729. Total energy = 13411.1141 kcal/mol (13398.5409 without restraints) Performing minimization step: 730. Total energy = 13397.3562 kcal/mol (13384.7921 without restraints) Performing minimization step: 731. Total energy = 13383.6276 kcal/mol (13371.0728 without restraints) Performing minimization step: 732. Total energy = 13369.9272 kcal/mol (13357.3815 without restraints) Performing minimization step: 733. Total energy = 13356.2554 kcal/mol (13343.7189 without restraints) Performing minimization step: 734. Total energy = 13342.6121 kcal/mol (13330.0846 without restraints) Performing minimization step: 735. Total energy = 13328.9969 kcal/mol (13316.4786 without restraints) Performing minimization step: 736. Total energy = 13315.4101 kcal/mol (13302.9010 without restraints) Performing minimization step: 737. Total energy = 13301.8510 kcal/mol (13289.3509 without restraints) Performing minimization step: 738. Total energy = 13288.3205 kcal/mol (13275.8295 without restraints) Performing minimization step: 739. Total energy = 13274.8180 kcal/mol (13262.3359 without restraints) Performing minimization step: 740. Total energy = 13261.3434 kcal/mol (13248.8703 without restraints) Performing minimization step: 741. Total energy = 13247.8967 kcal/mol (13235.4328 without restraints) Performing minimization step: 742. Total energy = 13234.4783 kcal/mol (13222.0233 without restraints) Performing minimization step: 743. Total energy = 13221.0874 kcal/mol (13208.6414 without restraints) Performing minimization step: 744. Total energy = 13207.7242 kcal/mol (13195.2870 without restraints) Performing minimization step: 745. Total energy = 13194.3886 kcal/mol (13181.9605 without restraints) Performing minimization step: 746. Total energy = 13181.0806 kcal/mol (13168.6614 without restraints) Performing minimization step: 747. Total energy = 13167.8000 kcal/mol (13155.3897 without restraints) Performing minimization step: 748. Total energy = 13154.5468 kcal/mol (13142.1454 without restraints) Performing minimization step: 749. Total energy = 13141.3202 kcal/mol (13128.9276 without restraints) Performing minimization step: 750. Total energy = 13128.1215 kcal/mol (13115.7378 without restraints) Performing minimization step: 751. Total energy = 13114.9498 kcal/mol (13102.5749 without restraints) Performing minimization step: 752. Total energy = 13101.8054 kcal/mol (13089.4393 without restraints) Performing minimization step: 753. Total energy = 13088.6878 kcal/mol (13076.3304 without restraints) Performing minimization step: 754. Total energy = 13075.5972 kcal/mol (13063.2487 without restraints) Performing minimization step: 755. Total energy = 13062.5339 kcal/mol (13050.1941 without restraints) Performing minimization step: 756. Total energy = 13049.4966 kcal/mol (13037.1654 without restraints) Performing minimization step: 757. Total energy = 13036.4861 kcal/mol (13024.1638 without restraints) Performing minimization step: 758. Total energy = 13023.5016 kcal/mol (13011.1880 without restraints) Performing minimization step: 759. Total energy = 13010.5446 kcal/mol (12998.2396 without restraints) Performing minimization step: 760. Total energy = 12997.6143 kcal/mol (12985.3179 without restraints) Performing minimization step: 761. Total energy = 12984.7099 kcal/mol (12972.4220 without restraints) Performing minimization step: 762. Total energy = 12971.8312 kcal/mol (12959.5520 without restraints) Performing minimization step: 763. Total energy = 12958.9794 kcal/mol (12946.7089 without restraints) Performing minimization step: 764. Total energy = 12946.1538 kcal/mol (12933.8918 without restraints) Performing minimization step: 765. Total energy = 12933.3540 kcal/mol (12921.1007 without restraints) Performing minimization step: 766. Total energy = 12920.5804 kcal/mol (12908.3357 without restraints) Performing minimization step: 767. Total energy = 12907.8324 kcal/mol (12895.5962 without restraints) Performing minimization step: 768. Total energy = 12895.1108 kcal/mol (12882.8831 without restraints) Performing minimization step: 769. Total energy = 12882.4150 kcal/mol (12870.1957 without restraints) Performing minimization step: 770. Total energy = 12869.7450 kcal/mol (12857.5343 without restraints) Performing minimization step: 771. Total energy = 12857.1007 kcal/mol (12844.8985 without restraints) Performing minimization step: 772. Total energy = 12844.4819 kcal/mol (12832.2881 without restraints) Performing minimization step: 773. Total energy = 12831.8885 kcal/mol (12819.7031 without restraints) Performing minimization step: 774. Total energy = 12819.3202 kcal/mol (12807.1432 without restraints) Performing minimization step: 775. Total energy = 12806.7777 kcal/mol (12794.6091 without restraints) Performing minimization step: 776. Total energy = 12794.2602 kcal/mol (12782.1000 without restraints) Performing minimization step: 777. Total energy = 12781.7681 kcal/mol (12769.6162 without restraints) Performing minimization step: 778. Total energy = 12769.3014 kcal/mol (12757.1579 without restraints) Performing minimization step: 779. Total energy = 12756.8597 kcal/mol (12744.7245 without restraints) Performing minimization step: 780. Total energy = 12744.4430 kcal/mol (12732.3163 without restraints) Performing minimization step: 781. Total energy = 12732.0516 kcal/mol (12719.9330 without restraints) Performing minimization step: 782. Total energy = 12719.6844 kcal/mol (12707.5739 without restraints) Performing minimization step: 783. Total energy = 12707.3419 kcal/mol (12695.2398 without restraints) Performing minimization step: 784. Total energy = 12695.0242 kcal/mol (12682.9304 without restraints) Performing minimization step: 785. Total energy = 12682.7311 kcal/mol (12670.6455 without restraints) Performing minimization step: 786. Total energy = 12670.4636 kcal/mol (12658.3862 without restraints) Performing minimization step: 787. Total energy = 12658.2198 kcal/mol (12646.1508 without restraints) Performing minimization step: 788. Total energy = 12646.0010 kcal/mol (12633.9401 without restraints) Performing minimization step: 789. Total energy = 12633.8061 kcal/mol (12621.7534 without restraints) Performing minimization step: 790. Total energy = 12621.6354 kcal/mol (12609.5908 without restraints) Performing minimization step: 791. Total energy = 12609.4891 kcal/mol (12597.4528 without restraints) Performing minimization step: 792. Total energy = 12597.3673 kcal/mol (12585.3389 without restraints) Performing minimization step: 793. Total energy = 12585.2693 kcal/mol (12573.2489 without restraints) Performing minimization step: 794. Total energy = 12573.1948 kcal/mol (12561.1825 without restraints) Performing minimization step: 795. Total energy = 12561.1448 kcal/mol (12549.1406 without restraints) Performing minimization step: 796. Total energy = 12549.1187 kcal/mol (12537.1225 without restraints) Performing minimization step: 797. Total energy = 12537.1166 kcal/mol (12525.1284 without restraints) Performing minimization step: 798. Total energy = 12525.1381 kcal/mol (12513.1578 without restraints) Performing minimization step: 799. Total energy = 12513.1833 kcal/mol (12501.2111 without restraints) Performing minimization step: 800. Total energy = 12501.2518 kcal/mol (12489.2877 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 801. Total energy = 12489.3434 kcal/mol (12477.3872 without restraints) Performing minimization step: 802. Total energy = 12477.4594 kcal/mol (12465.5111 without restraints) Performing minimization step: 803. Total energy = 12465.5984 kcal/mol (12453.6580 without restraints) Performing minimization step: 804. Total energy = 12453.7608 kcal/mol (12441.8284 without restraints) Performing minimization step: 805. Total energy = 12441.9465 kcal/mol (12430.0220 without restraints) Performing minimization step: 806. Total energy = 12430.1556 kcal/mol (12418.2390 without restraints) Performing minimization step: 807. Total energy = 12418.3877 kcal/mol (12406.4789 without restraints) Performing minimization step: 808. Total energy = 12406.6431 kcal/mol (12394.7422 without restraints) Performing minimization step: 809. Total energy = 12394.9216 kcal/mol (12383.0286 without restraints) Performing minimization step: 810. Total energy = 12383.2227 kcal/mol (12371.3374 without restraints) Performing minimization step: 811. Total energy = 12371.5467 kcal/mol (12359.6692 without restraints) Performing minimization step: 812. Total energy = 12359.8930 kcal/mol (12348.0232 without restraints) Performing minimization step: 813. Total energy = 12348.2626 kcal/mol (12336.4007 without restraints) Performing minimization step: 814. Total energy = 12336.6550 kcal/mol (12324.8009 without restraints) Performing minimization step: 815. Total energy = 12325.0704 kcal/mol (12313.2240 without restraints) Performing minimization step: 816. Total energy = 12313.5080 kcal/mol (12301.6693 without restraints) Performing minimization step: 817. Total energy = 12301.9679 kcal/mol (12290.1369 without restraints) Performing minimization step: 818. Total energy = 12290.4499 kcal/mol (12278.6266 without restraints) Performing minimization step: 819. Total energy = 12278.9545 kcal/mol (12267.1390 without restraints) Performing minimization step: 820. Total energy = 12267.4815 kcal/mol (12255.6735 without restraints) Performing minimization step: 821. Total energy = 12256.0307 kcal/mol (12244.2306 without restraints) Performing minimization step: 822. Total energy = 12244.6022 kcal/mol (12232.8095 without restraints) Performing minimization step: 823. Total energy = 12233.1950 kcal/mol (12221.4099 without restraints) Performing minimization step: 824. Total energy = 12221.8104 kcal/mol (12210.0331 without restraints) Performing minimization step: 825. Total energy = 12210.4469 kcal/mol (12198.6769 without restraints) Performing minimization step: 826. Total energy = 12199.1058 kcal/mol (12187.3435 without restraints) Performing minimization step: 827. Total energy = 12187.7867 kcal/mol (12176.0319 without restraints) Performing minimization step: 828. Total energy = 12176.4898 kcal/mol (12164.7425 without restraints) Performing minimization step: 829. Total energy = 12165.2135 kcal/mol (12153.4737 without restraints) Performing minimization step: 830. Total energy = 12153.9594 kcal/mol (12142.2271 without restraints) Performing minimization step: 831. Total energy = 12142.7268 kcal/mol (12131.0021 without restraints) Performing minimization step: 832. Total energy = 12131.5161 kcal/mol (12119.7988 without restraints) Performing minimization step: 833. Total energy = 12120.3264 kcal/mol (12108.6164 without restraints) Performing minimization step: 834. Total energy = 12109.1581 kcal/mol (12097.4558 without restraints) Performing minimization step: 835. Total energy = 12098.0114 kcal/mol (12086.3165 without restraints) Performing minimization step: 836. Total energy = 12086.8858 kcal/mol (12075.1984 without restraints) Performing minimization step: 837. Total energy = 12075.7816 kcal/mol (12064.1015 without restraints) Performing minimization step: 838. Total energy = 12064.6985 kcal/mol (12053.0259 without restraints) Performing minimization step: 839. Total energy = 12053.6367 kcal/mol (12041.9715 without restraints) Performing minimization step: 840. Total energy = 12042.5951 kcal/mol (12030.9372 without restraints) Performing minimization step: 841. Total energy = 12031.5753 kcal/mol (12019.9248 without restraints) Performing minimization step: 842. Total energy = 12020.5757 kcal/mol (12008.9325 without restraints) Performing minimization step: 843. Total energy = 12009.5971 kcal/mol (11997.9612 without restraints) Performing minimization step: 844. Total energy = 11998.6396 kcal/mol (11987.0110 without restraints) Performing minimization step: 845. Total energy = 11987.7027 kcal/mol (11976.0813 without restraints) Performing minimization step: 846. Total energy = 11976.7857 kcal/mol (11965.1717 without restraints) Performing minimization step: 847. Total energy = 11965.8898 kcal/mol (11954.2831 without restraints) Performing minimization step: 848. Total energy = 11955.0145 kcal/mol (11943.4151 without restraints) Performing minimization step: 849. Total energy = 11944.1597 kcal/mol (11932.5676 without restraints) Performing minimization step: 850. Total energy = 11933.3257 kcal/mol (11921.7406 without restraints) Performing minimization step: 851. Total energy = 11922.5114 kcal/mol (11910.9336 without restraints) Performing minimization step: 852. Total energy = 11911.7174 kcal/mol (11900.1468 without restraints) Performing minimization step: 853. Total energy = 11900.9435 kcal/mol (11889.3801 without restraints) Performing minimization step: 854. Total energy = 11890.1904 kcal/mol (11878.6341 without restraints) Performing minimization step: 855. Total energy = 11879.4575 kcal/mol (11867.9083 without restraints) Performing minimization step: 856. Total energy = 11868.7438 kcal/mol (11857.2018 without restraints) Performing minimization step: 857. Total energy = 11858.0505 kcal/mol (11846.5156 without restraints) Performing minimization step: 858. Total energy = 11847.3772 kcal/mol (11835.8494 without restraints) Performing minimization step: 859. Total energy = 11836.7232 kcal/mol (11825.2025 without restraints) Performing minimization step: 860. Total energy = 11826.0891 kcal/mol (11814.5755 without restraints) Performing minimization step: 861. Total energy = 11815.4749 kcal/mol (11803.9683 without restraints) Performing minimization step: 862. Total energy = 11804.8804 kcal/mol (11793.3809 without restraints) Performing minimization step: 863. Total energy = 11794.3054 kcal/mol (11782.8130 without restraints) Performing minimization step: 864. Total energy = 11783.7501 kcal/mol (11772.2647 without restraints) Performing minimization step: 865. Total energy = 11773.2140 kcal/mol (11761.7356 without restraints) Performing minimization step: 866. Total energy = 11762.6978 kcal/mol (11751.2264 without restraints) Performing minimization step: 867. Total energy = 11752.2012 kcal/mol (11740.7368 without restraints) Performing minimization step: 868. Total energy = 11741.7236 kcal/mol (11730.2661 without restraints) Performing minimization step: 869. Total energy = 11731.2651 kcal/mol (11719.8146 without restraints) Performing minimization step: 870. Total energy = 11720.8258 kcal/mol (11709.3822 without restraints) Performing minimization step: 871. Total energy = 11710.4058 kcal/mol (11698.9692 without restraints) Performing minimization step: 872. Total energy = 11700.0050 kcal/mol (11688.5753 without restraints) Performing minimization step: 873. Total energy = 11689.6232 kcal/mol (11678.2004 without restraints) Performing minimization step: 874. Total energy = 11679.2602 kcal/mol (11667.8444 without restraints) Performing minimization step: 875. Total energy = 11668.9162 kcal/mol (11657.5073 without restraints) Performing minimization step: 876. Total energy = 11658.5910 kcal/mol (11647.1889 without restraints) Performing minimization step: 877. Total energy = 11648.2847 kcal/mol (11636.8894 without restraints) Performing minimization step: 878. Total energy = 11637.9971 kcal/mol (11626.6088 without restraints) Performing minimization step: 879. Total energy = 11627.7282 kcal/mol (11616.3467 without restraints) Performing minimization step: 880. Total energy = 11617.4774 kcal/mol (11606.1027 without restraints) Performing minimization step: 881. Total energy = 11607.2452 kcal/mol (11595.8773 without restraints) Performing minimization step: 882. Total energy = 11597.0321 kcal/mol (11585.6710 without restraints) Performing minimization step: 883. Total energy = 11586.8378 kcal/mol (11575.4835 without restraints) Performing minimization step: 884. Total energy = 11576.6619 kcal/mol (11565.3143 without restraints) Performing minimization step: 885. Total energy = 11566.5042 kcal/mol (11555.1634 without restraints) Performing minimization step: 886. Total energy = 11556.3648 kcal/mol (11545.0308 without restraints) Performing minimization step: 887. Total energy = 11546.2440 kcal/mol (11534.9167 without restraints) Performing minimization step: 888. Total energy = 11536.1411 kcal/mol (11524.8206 without restraints) Performing minimization step: 889. Total energy = 11526.0569 kcal/mol (11514.7430 without restraints) Performing minimization step: 890. Total energy = 11515.9903 kcal/mol (11504.6832 without restraints) Performing minimization step: 891. Total energy = 11505.9422 kcal/mol (11494.6417 without restraints) Performing minimization step: 892. Total energy = 11495.9117 kcal/mol (11484.6179 without restraints) Performing minimization step: 893. Total energy = 11485.8992 kcal/mol (11474.6121 without restraints) Performing minimization step: 894. Total energy = 11475.9047 kcal/mol (11464.6243 without restraints) Performing minimization step: 895. Total energy = 11465.9282 kcal/mol (11454.6544 without restraints) Performing minimization step: 896. Total energy = 11455.9693 kcal/mol (11444.7021 without restraints) Performing minimization step: 897. Total energy = 11446.0283 kcal/mol (11434.7677 without restraints) Performing minimization step: 898. Total energy = 11436.1047 kcal/mol (11424.8507 without restraints) Performing minimization step: 899. Total energy = 11426.1993 kcal/mol (11414.9519 without restraints) Performing minimization step: 900. Total energy = 11416.3109 kcal/mol (11405.0702 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 901. Total energy = 11406.4402 kcal/mol (11395.2060 without restraints) Performing minimization step: 902. Total energy = 11396.5867 kcal/mol (11385.3591 without restraints) Performing minimization step: 903. Total energy = 11386.7510 kcal/mol (11375.5300 without restraints) Performing minimization step: 904. Total energy = 11376.9326 kcal/mol (11365.7181 without restraints) Performing minimization step: 905. Total energy = 11367.1310 kcal/mol (11355.9230 without restraints) Performing minimization step: 906. Total energy = 11357.3470 kcal/mol (11346.1454 without restraints) Performing minimization step: 907. Total energy = 11347.5806 kcal/mol (11336.3856 without restraints) Performing minimization step: 908. Total energy = 11337.8314 kcal/mol (11326.6429 without restraints) Performing minimization step: 909. Total energy = 11328.0990 kcal/mol (11316.9170 without restraints) Performing minimization step: 910. Total energy = 11318.3838 kcal/mol (11307.2082 without restraints) Performing minimization step: 911. Total energy = 11308.6859 kcal/mol (11297.5168 without restraints) Performing minimization step: 912. Total energy = 11299.0050 kcal/mol (11287.8424 without restraints) Performing minimization step: 913. Total energy = 11289.3409 kcal/mol (11278.1847 without restraints) Performing minimization step: 914. Total energy = 11279.6935 kcal/mol (11268.5437 without restraints) Performing minimization step: 915. Total energy = 11270.0630 kcal/mol (11258.9196 without restraints) Performing minimization step: 916. Total energy = 11260.4497 kcal/mol (11249.3126 without restraints) Performing minimization step: 917. Total energy = 11250.8521 kcal/mol (11239.7213 without restraints) Performing minimization step: 918. Total energy = 11241.2715 kcal/mol (11230.1473 without restraints) Performing minimization step: 919. Total energy = 11231.7082 kcal/mol (11220.5904 without restraints) Performing minimization step: 920. Total energy = 11222.1610 kcal/mol (11211.0495 without restraints) Performing minimization step: 921. Total energy = 11212.6303 kcal/mol (11201.5251 without restraints) Performing minimization step: 922. Total energy = 11203.1161 kcal/mol (11192.0173 without restraints) Performing minimization step: 923. Total energy = 11193.6184 kcal/mol (11182.5260 without restraints) Performing minimization step: 924. Total energy = 11184.1371 kcal/mol (11173.0509 without restraints) Performing minimization step: 925. Total energy = 11174.6719 kcal/mol (11163.5921 without restraints) Performing minimization step: 926. Total energy = 11165.2230 kcal/mol (11154.1495 without restraints) Performing minimization step: 927. Total energy = 11155.7903 kcal/mol (11144.7230 without restraints) Performing minimization step: 928. Total energy = 11146.3740 kcal/mol (11135.3130 without restraints) Performing minimization step: 929. Total energy = 11136.9739 kcal/mol (11125.9192 without restraints) Performing minimization step: 930. Total energy = 11127.5899 kcal/mol (11116.5414 without restraints) Performing minimization step: 931. Total energy = 11118.2219 kcal/mol (11107.1797 without restraints) Performing minimization step: 932. Total energy = 11108.8704 kcal/mol (11097.8345 without restraints) Performing minimization step: 933. Total energy = 11099.5346 kcal/mol (11088.5050 without restraints) Performing minimization step: 934. Total energy = 11090.2148 kcal/mol (11079.1914 without restraints) Performing minimization step: 935. Total energy = 11080.9107 kcal/mol (11069.8934 without restraints) Performing minimization step: 936. Total energy = 11071.6224 kcal/mol (11060.6112 without restraints) Performing minimization step: 937. Total energy = 11062.3500 kcal/mol (11051.3450 without restraints) Performing minimization step: 938. Total energy = 11053.0927 kcal/mol (11042.0939 without restraints) Performing minimization step: 939. Total energy = 11043.8515 kcal/mol (11032.8590 without restraints) Performing minimization step: 940. Total energy = 11034.6261 kcal/mol (11023.6396 without restraints) Performing minimization step: 941. Total energy = 11025.4161 kcal/mol (11014.4358 without restraints) Performing minimization step: 942. Total energy = 11016.2218 kcal/mol (11005.2476 without restraints) Performing minimization step: 943. Total energy = 11007.0430 kcal/mol (10996.0749 without restraints) Performing minimization step: 944. Total energy = 10997.8795 kcal/mol (10986.9177 without restraints) Performing minimization step: 945. Total energy = 10988.7316 kcal/mol (10977.7757 without restraints) Performing minimization step: 946. Total energy = 10979.5987 kcal/mol (10968.6490 without restraints) Performing minimization step: 947. Total energy = 10970.4816 kcal/mol (10959.5381 without restraints) Performing minimization step: 948. Total energy = 10961.3798 kcal/mol (10950.4422 without restraints) Performing minimization step: 949. Total energy = 10952.2931 kcal/mol (10941.3616 without restraints) Performing minimization step: 950. Total energy = 10943.2216 kcal/mol (10932.2962 without restraints) Performing minimization step: 951. Total energy = 10934.1653 kcal/mol (10923.2459 without restraints) Performing minimization step: 952. Total energy = 10925.1238 kcal/mol (10914.2104 without restraints) Performing minimization step: 953. Total energy = 10916.0975 kcal/mol (10905.1902 without restraints) Performing minimization step: 954. Total energy = 10907.0864 kcal/mol (10896.1851 without restraints) Performing minimization step: 955. Total energy = 10898.0902 kcal/mol (10887.1950 without restraints) Performing minimization step: 956. Total energy = 10889.1094 kcal/mol (10878.2205 without restraints) Performing minimization step: 957. Total energy = 10880.1432 kcal/mol (10869.2600 without restraints) Performing minimization step: 958. Total energy = 10871.1919 kcal/mol (10860.3146 without restraints) Performing minimization step: 959. Total energy = 10862.2552 kcal/mol (10851.3841 without restraints) Performing minimization step: 960. Total energy = 10853.3337 kcal/mol (10842.4684 without restraints) Performing minimization step: 961. Total energy = 10844.4266 kcal/mol (10833.5673 without restraints) Performing minimization step: 962. Total energy = 10835.5343 kcal/mol (10824.6808 without restraints) Performing minimization step: 963. Total energy = 10826.6561 kcal/mol (10815.8087 without restraints) Performing minimization step: 964. Total energy = 10817.7934 kcal/mol (10806.9521 without restraints) Performing minimization step: 965. Total energy = 10808.9448 kcal/mol (10798.1092 without restraints) Performing minimization step: 966. Total energy = 10800.1104 kcal/mol (10789.2806 without restraints) Performing minimization step: 967. Total energy = 10791.2906 kcal/mol (10780.4668 without restraints) Performing minimization step: 968. Total energy = 10782.4861 kcal/mol (10771.6683 without restraints) Performing minimization step: 969. Total energy = 10773.6948 kcal/mol (10762.8829 without restraints) Performing minimization step: 970. Total energy = 10764.9183 kcal/mol (10754.1123 without restraints) Performing minimization step: 971. Total energy = 10756.1566 kcal/mol (10745.3564 without restraints) Performing minimization step: 972. Total energy = 10747.4087 kcal/mol (10736.6142 without restraints) Performing minimization step: 973. Total energy = 10738.6751 kcal/mol (10727.8866 without restraints) Performing minimization step: 974. Total energy = 10729.9563 kcal/mol (10719.1737 without restraints) Performing minimization step: 975. Total energy = 10721.2514 kcal/mol (10710.4747 without restraints) Performing minimization step: 976. Total energy = 10712.5604 kcal/mol (10701.7895 without restraints) Performing minimization step: 977. Total energy = 10703.8836 kcal/mol (10693.1185 without restraints) Performing minimization step: 978. Total energy = 10695.2208 kcal/mol (10684.4615 without restraints) Performing minimization step: 979. Total energy = 10686.5717 kcal/mol (10675.8182 without restraints) Performing minimization step: 980. Total energy = 10677.9363 kcal/mol (10667.1885 without restraints) Performing minimization step: 981. Total energy = 10669.3152 kcal/mol (10658.5733 without restraints) Performing minimization step: 982. Total energy = 10660.7080 kcal/mol (10649.9720 without restraints) Performing minimization step: 983. Total energy = 10652.1143 kcal/mol (10641.3840 without restraints) Performing minimization step: 984. Total energy = 10643.5348 kcal/mol (10632.8103 without restraints) Performing minimization step: 985. Total energy = 10634.9692 kcal/mol (10624.2505 without restraints) Performing minimization step: 986. Total energy = 10626.4173 kcal/mol (10615.7043 without restraints) Performing minimization step: 987. Total energy = 10617.8788 kcal/mol (10607.1715 without restraints) Performing minimization step: 988. Total energy = 10609.3539 kcal/mol (10598.6524 without restraints) Performing minimization step: 989. Total energy = 10600.8425 kcal/mol (10590.1471 without restraints) Performing minimization step: 990. Total energy = 10592.3453 kcal/mol (10581.6553 without restraints) Performing minimization step: 991. Total energy = 10583.8615 kcal/mol (10573.1771 without restraints) Performing minimization step: 992. Total energy = 10575.3908 kcal/mol (10564.7121 without restraints) Performing minimization step: 993. Total energy = 10566.9336 kcal/mol (10556.2606 without restraints) Performing minimization step: 994. Total energy = 10558.4898 kcal/mol (10547.8226 without restraints) Performing minimization step: 995. Total energy = 10550.0595 kcal/mol (10539.3981 without restraints) Performing minimization step: 996. Total energy = 10541.6427 kcal/mol (10530.9868 without restraints) Performing minimization step: 997. Total energy = 10533.2390 kcal/mol (10522.5888 without restraints) Performing minimization step: 998. Total energy = 10524.8485 kcal/mol (10514.2040 without restraints) Performing minimization step: 999. Total energy = 10516.4716 kcal/mol (10505.8331 without restraints) Performing minimization step: 1000. Total energy = 10508.1075 kcal/mol (10497.4741 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 10499.7565 kcal/mol (10489.1287 without restraints) Performing minimization step: 1002. Total energy = 10491.4186 kcal/mol (10480.7967 without restraints) Performing minimization step: 1003. Total energy = 10483.0939 kcal/mol (10472.4775 without restraints) Performing minimization step: 1004. Total energy = 10474.7823 kcal/mol (10464.1716 without restraints) Performing minimization step: 1005. Total energy = 10466.4841 kcal/mol (10455.8790 without restraints) Performing minimization step: 1006. Total energy = 10458.1985 kcal/mol (10447.5990 without restraints) Performing minimization step: 1007. Total energy = 10449.9253 kcal/mol (10439.3314 without restraints) Performing minimization step: 1008. Total energy = 10441.6659 kcal/mol (10431.0776 without restraints) Performing minimization step: 1009. Total energy = 10433.4192 kcal/mol (10422.8363 without restraints) Performing minimization step: 1010. Total energy = 10425.1851 kcal/mol (10414.6080 without restraints) Performing minimization step: 1011. Total energy = 10416.9639 kcal/mol (10406.3924 without restraints) Performing minimization step: 1012. Total energy = 10408.7551 kcal/mol (10398.1891 without restraints) Performing minimization step: 1013. Total energy = 10400.5595 kcal/mol (10389.9990 without restraints) Performing minimization step: 1014. Total energy = 10392.3766 kcal/mol (10381.8219 without restraints) Performing minimization step: 1015. Total energy = 10384.2062 kcal/mol (10373.6567 without restraints) Performing minimization step: 1016. Total energy = 10376.0484 kcal/mol (10365.5046 without restraints) Performing minimization step: 1017. Total energy = 10367.9032 kcal/mol (10357.3650 without restraints) Performing minimization step: 1018. Total energy = 10359.7711 kcal/mol (10349.2382 without restraints) Performing minimization step: 1019. Total energy = 10351.6513 kcal/mol (10341.1240 without restraints) Performing minimization step: 1020. Total energy = 10343.5438 kcal/mol (10333.0221 without restraints) Performing minimization step: 1021. Total energy = 10335.4489 kcal/mol (10324.9327 without restraints) Performing minimization step: 1022. Total energy = 10327.3662 kcal/mol (10316.8554 without restraints) Performing minimization step: 1023. Total energy = 10319.2961 kcal/mol (10308.7910 without restraints) Performing minimization step: 1024. Total energy = 10311.2385 kcal/mol (10300.7388 without restraints) Performing minimization step: 1025. Total energy = 10303.1932 kcal/mol (10292.6990 without restraints) Performing minimization step: 1026. Total energy = 10295.1602 kcal/mol (10284.6714 without restraints) Performing minimization step: 1027. Total energy = 10287.1397 kcal/mol (10276.6564 without restraints) Performing minimization step: 1028. Total energy = 10279.1314 kcal/mol (10268.6535 without restraints) Performing minimization step: 1029. Total energy = 10271.1350 kcal/mol (10260.6626 without restraints) Performing minimization step: 1030. Total energy = 10263.1509 kcal/mol (10252.6839 without restraints) Performing minimization step: 1031. Total energy = 10255.1784 kcal/mol (10244.7168 without restraints) Performing minimization step: 1032. Total energy = 10247.2187 kcal/mol (10236.7627 without restraints) Performing minimization step: 1033. Total energy = 10239.2711 kcal/mol (10228.8204 without restraints) Performing minimization step: 1034. Total energy = 10231.3352 kcal/mol (10220.8900 without restraints) Performing minimization step: 1035. Total energy = 10223.4113 kcal/mol (10212.9715 without restraints) Performing minimization step: 1036. Total energy = 10215.4989 kcal/mol (10205.0644 without restraints) Performing minimization step: 1037. Total energy = 10207.5991 kcal/mol (10197.1701 without restraints) Performing minimization step: 1038. Total energy = 10199.7108 kcal/mol (10189.2872 without restraints) Performing minimization step: 1039. Total energy = 10191.8344 kcal/mol (10181.4161 without restraints) Performing minimization step: 1040. Total energy = 10183.9697 kcal/mol (10173.5570 without restraints) Performing minimization step: 1041. Total energy = 10176.1171 kcal/mol (10165.7097 without restraints) Performing minimization step: 1042. Total energy = 10168.2766 kcal/mol (10157.8744 without restraints) Performing minimization step: 1043. Total energy = 10160.4473 kcal/mol (10150.0506 without restraints) Performing minimization step: 1044. Total energy = 10152.6303 kcal/mol (10142.2389 without restraints) Performing minimization step: 1045. Total energy = 10144.8248 kcal/mol (10134.4388 without restraints) Performing minimization step: 1046. Total energy = 10137.0309 kcal/mol (10126.6503 without restraints) Performing minimization step: 1047. Total energy = 10129.2483 kcal/mol (10118.8731 without restraints) Performing minimization step: 1048. Total energy = 10121.4777 kcal/mol (10111.1078 without restraints) Performing minimization step: 1049. Total energy = 10113.7190 kcal/mol (10103.3544 without restraints) Performing minimization step: 1050. Total energy = 10105.9713 kcal/mol (10095.6120 without restraints) Performing minimization step: 1051. Total energy = 10098.2355 kcal/mol (10087.8816 without restraints) Performing minimization step: 1052. Total energy = 10090.5112 kcal/mol (10080.1625 without restraints) Performing minimization step: 1053. Total energy = 10082.7980 kcal/mol (10072.4545 without restraints) Performing minimization step: 1054. Total energy = 10075.0961 kcal/mol (10064.7581 without restraints) Performing minimization step: 1055. Total energy = 10067.4061 kcal/mol (10057.0734 without restraints) Performing minimization step: 1056. Total energy = 10059.7272 kcal/mol (10049.3998 without restraints) Performing minimization step: 1057. Total energy = 10052.0599 kcal/mol (10041.7377 without restraints) Performing minimization step: 1058. Total energy = 10044.4038 kcal/mol (10034.0870 without restraints) Performing minimization step: 1059. Total energy = 10036.7589 kcal/mol (10026.4473 without restraints) Performing minimization step: 1060. Total energy = 10029.1251 kcal/mol (10018.8187 without restraints) Performing minimization step: 1061. Total energy = 10021.5026 kcal/mol (10011.2015 without restraints) Performing minimization step: 1062. Total energy = 10013.8918 kcal/mol (10003.5960 without restraints) Performing minimization step: 1063. Total energy = 10006.2918 kcal/mol (9996.0012 without restraints) Performing minimization step: 1064. Total energy = 9998.7031 kcal/mol (9988.4178 without restraints) Performing minimization step: 1065. Total energy = 9991.1255 kcal/mol (9980.8457 without restraints) Performing minimization step: 1066. Total energy = 9983.5596 kcal/mol (9973.2848 without restraints) Performing minimization step: 1067. Total energy = 9976.0036 kcal/mol (9965.7339 without restraints) Performing minimization step: 1068. Total energy = 9968.4583 kcal/mol (9958.1940 without restraints) Performing minimization step: 1069. Total energy = 9960.9247 kcal/mol (9950.6657 without restraints) Performing minimization step: 1070. Total energy = 9953.4019 kcal/mol (9943.1480 without restraints) Performing minimization step: 1071. Total energy = 9945.8900 kcal/mol (9935.6414 without restraints) Performing minimization step: 1072. Total energy = 9938.3892 kcal/mol (9928.1458 without restraints) Performing minimization step: 1073. Total energy = 9930.8996 kcal/mol (9920.6615 without restraints) Performing minimization step: 1074. Total energy = 9923.4212 kcal/mol (9913.1885 without restraints) Performing minimization step: 1075. Total energy = 9915.9533 kcal/mol (9905.7254 without restraints) Performing minimization step: 1076. Total energy = 9908.4959 kcal/mol (9898.2732 without restraints) Performing minimization step: 1077. Total energy = 9901.0491 kcal/mol (9890.8317 without restraints) Performing minimization step: 1078. Total energy = 9893.6133 kcal/mol (9883.4010 without restraints) Performing minimization step: 1079. Total energy = 9886.1880 kcal/mol (9875.9808 without restraints) Performing minimization step: 1080. Total energy = 9878.7737 kcal/mol (9868.5717 without restraints) Performing minimization step: 1081. Total energy = 9871.3699 kcal/mol (9861.1732 without restraints) Performing minimization step: 1082. Total energy = 9863.9765 kcal/mol (9853.7850 without restraints) Performing minimization step: 1083. Total energy = 9856.5942 kcal/mol (9846.4078 without restraints) Performing minimization step: 1084. Total energy = 9849.2226 kcal/mol (9839.0413 without restraints) Performing minimization step: 1085. Total energy = 9841.8609 kcal/mol (9831.6848 without restraints) Performing minimization step: 1086. Total energy = 9834.5101 kcal/mol (9824.3391 without restraints) Performing minimization step: 1087. Total energy = 9827.1696 kcal/mol (9817.0039 without restraints) Performing minimization step: 1088. Total energy = 9819.8398 kcal/mol (9809.6789 without restraints) Performing minimization step: 1089. Total energy = 9812.5204 kcal/mol (9802.3649 without restraints) Performing minimization step: 1090. Total energy = 9805.2115 kcal/mol (9795.0610 without restraints) Performing minimization step: 1091. Total energy = 9797.9131 kcal/mol (9787.7678 without restraints) Performing minimization step: 1092. Total energy = 9790.6245 kcal/mol (9780.4843 without restraints) Performing minimization step: 1093. Total energy = 9783.3472 kcal/mol (9773.2124 without restraints) Performing minimization step: 1094. Total energy = 9776.0799 kcal/mol (9765.9499 without restraints) Performing minimization step: 1095. Total energy = 9768.8229 kcal/mol (9758.6980 without restraints) Performing minimization step: 1096. Total energy = 9761.5758 kcal/mol (9751.4559 without restraints) Performing minimization step: 1097. Total energy = 9754.3394 kcal/mol (9744.2249 without restraints) Performing minimization step: 1098. Total energy = 9747.1136 kcal/mol (9737.0040 without restraints) Performing minimization step: 1099. Total energy = 9739.8978 kcal/mol (9729.7933 without restraints) Performing minimization step: 1100. Total energy = 9732.6919 kcal/mol (9722.5924 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 9725.4961 kcal/mol (9715.4017 without restraints) Performing minimization step: 1102. Total energy = 9718.3105 kcal/mol (9708.2213 without restraints) Performing minimization step: 1103. Total energy = 9711.1352 kcal/mol (9701.0510 without restraints) Performing minimization step: 1104. Total energy = 9703.9700 kcal/mol (9693.8908 without restraints) Performing minimization step: 1105. Total energy = 9696.8150 kcal/mol (9686.7409 without restraints) Performing minimization step: 1106. Total energy = 9689.6696 kcal/mol (9679.6006 without restraints) Performing minimization step: 1107. Total energy = 9682.5345 kcal/mol (9672.4706 without restraints) Performing minimization step: 1108. Total energy = 9675.4094 kcal/mol (9665.3505 without restraints) Performing minimization step: 1109. Total energy = 9668.2940 kcal/mol (9658.2400 without restraints) Performing minimization step: 1110. Total energy = 9661.1888 kcal/mol (9651.1399 without restraints) Performing minimization step: 1111. Total energy = 9654.0935 kcal/mol (9644.0497 without restraints) Performing minimization step: 1112. Total energy = 9647.0079 kcal/mol (9636.9691 without restraints) Performing minimization step: 1113. Total energy = 9639.9321 kcal/mol (9629.8983 without restraints) Performing minimization step: 1114. Total energy = 9632.8662 kcal/mol (9622.8375 without restraints) Performing minimization step: 1115. Total energy = 9625.8102 kcal/mol (9615.7864 without restraints) Performing minimization step: 1116. Total energy = 9618.7634 kcal/mol (9608.7447 without restraints) Performing minimization step: 1117. Total energy = 9611.7269 kcal/mol (9601.7132 without restraints) Performing minimization step: 1118. Total energy = 9604.7000 kcal/mol (9594.6913 without restraints) Performing minimization step: 1119. Total energy = 9597.6832 kcal/mol (9587.6795 without restraints) Performing minimization step: 1120. Total energy = 9590.6759 kcal/mol (9580.6772 without restraints) Performing minimization step: 1121. Total energy = 9583.6780 kcal/mol (9573.6844 without restraints) Performing minimization step: 1122. Total energy = 9576.6910 kcal/mol (9566.7023 without restraints) Performing minimization step: 1123. Total energy = 9569.7131 kcal/mol (9559.7294 without restraints) Performing minimization step: 1124. Total energy = 9562.7441 kcal/mol (9552.7654 without restraints) Performing minimization step: 1125. Total energy = 9555.7850 kcal/mol (9545.8113 without restraints) Performing minimization step: 1126. Total energy = 9548.8357 kcal/mol (9538.8671 without restraints) Performing minimization step: 1127. Total energy = 9541.8963 kcal/mol (9531.9325 without restraints) Performing minimization step: 1128. Total energy = 9534.9656 kcal/mol (9525.0068 without restraints) Performing minimization step: 1129. Total energy = 9528.0449 kcal/mol (9518.0913 without restraints) Performing minimization step: 1130. Total energy = 9521.1338 kcal/mol (9511.1850 without restraints) Performing minimization step: 1131. Total energy = 9514.2317 kcal/mol (9504.2877 without restraints) Performing minimization step: 1132. Total energy = 9507.3394 kcal/mol (9497.4004 without restraints) Performing minimization step: 1133. Total energy = 9500.4563 kcal/mol (9490.5223 without restraints) Performing minimization step: 1134. Total energy = 9493.5827 kcal/mol (9483.6537 without restraints) Performing minimization step: 1135. Total energy = 9486.7188 kcal/mol (9476.7947 without restraints) Performing minimization step: 1136. Total energy = 9479.8638 kcal/mol (9469.9445 without restraints) Performing minimization step: 1137. Total energy = 9473.0181 kcal/mol (9463.1038 without restraints) Performing minimization step: 1138. Total energy = 9466.1820 kcal/mol (9456.2727 without restraints) Performing minimization step: 1139. Total energy = 9459.3552 kcal/mol (9449.4509 without restraints) Performing minimization step: 1140. Total energy = 9452.5377 kcal/mol (9442.6383 without restraints) Performing minimization step: 1141. Total energy = 9445.7300 kcal/mol (9435.8356 without restraints) Performing minimization step: 1142. Total energy = 9438.9308 kcal/mol (9429.0409 without restraints) Performing minimization step: 1143. Total energy = 9432.1407 kcal/mol (9422.2561 without restraints) Performing minimization step: 1144. Total energy = 9425.3594 kcal/mol (9415.4796 without restraints) Performing minimization step: 1145. Total energy = 9418.5881 kcal/mol (9408.7133 without restraints) Performing minimization step: 1146. Total energy = 9411.8259 kcal/mol (9401.9560 without restraints) Performing minimization step: 1147. Total energy = 9405.0728 kcal/mol (9395.2078 without restraints) Performing minimization step: 1148. Total energy = 9398.3289 kcal/mol (9388.4687 without restraints) Performing minimization step: 1149. Total energy = 9391.5940 kcal/mol (9381.7387 without restraints) Performing minimization step: 1150. Total energy = 9384.8680 kcal/mol (9375.0176 without restraints) Performing minimization step: 1151. Total energy = 9378.1514 kcal/mol (9368.3059 without restraints) Performing minimization step: 1152. Total energy = 9371.4437 kcal/mol (9361.6030 without restraints) Performing minimization step: 1153. Total energy = 9364.7445 kcal/mol (9354.9088 without restraints) Performing minimization step: 1154. Total energy = 9358.0548 kcal/mol (9348.2239 without restraints) Performing minimization step: 1155. Total energy = 9351.3735 kcal/mol (9341.5476 without restraints) Performing minimization step: 1156. Total energy = 9344.7015 kcal/mol (9334.8804 without restraints) Performing minimization step: 1157. Total energy = 9338.0387 kcal/mol (9328.2224 without restraints) Performing minimization step: 1158. Total energy = 9331.3849 kcal/mol (9321.5736 without restraints) Performing minimization step: 1159. Total energy = 9324.7395 kcal/mol (9314.9331 without restraints) Performing minimization step: 1160. Total energy = 9318.1035 kcal/mol (9308.3019 without restraints) Performing minimization step: 1161. Total energy = 9311.4763 kcal/mol (9301.6796 without restraints) Performing minimization step: 1162. Total energy = 9304.8580 kcal/mol (9295.0660 without restraints) Performing minimization step: 1163. Total energy = 9298.2487 kcal/mol (9288.4616 without restraints) Performing minimization step: 1164. Total energy = 9291.6479 kcal/mol (9281.8656 without restraints) Performing minimization step: 1165. Total energy = 9285.0552 kcal/mol (9275.2778 without restraints) Performing minimization step: 1166. Total energy = 9278.4716 kcal/mol (9268.6990 without restraints) Performing minimization step: 1167. Total energy = 9271.8969 kcal/mol (9262.1292 without restraints) Performing minimization step: 1168. Total energy = 9265.3311 kcal/mol (9255.5682 without restraints) Performing minimization step: 1169. Total energy = 9258.7741 kcal/mol (9249.0161 without restraints) Performing minimization step: 1170. Total energy = 9252.2260 kcal/mol (9242.4730 without restraints) Performing minimization step: 1171. Total energy = 9245.6866 kcal/mol (9235.9382 without restraints) Performing minimization step: 1172. Total energy = 9239.1556 kcal/mol (9229.4120 without restraints) Performing minimization step: 1173. Total energy = 9232.6332 kcal/mol (9222.8945 without restraints) Performing minimization step: 1174. Total energy = 9226.1200 kcal/mol (9216.3859 without restraints) Performing minimization step: 1175. Total energy = 9219.6147 kcal/mol (9209.8856 without restraints) Performing minimization step: 1176. Total energy = 9213.1184 kcal/mol (9203.3941 without restraints) Performing minimization step: 1177. Total energy = 9206.6308 kcal/mol (9196.9113 without restraints) Performing minimization step: 1178. Total energy = 9200.1512 kcal/mol (9190.4364 without restraints) Performing minimization step: 1179. Total energy = 9193.6804 kcal/mol (9183.9705 without restraints) Performing minimization step: 1180. Total energy = 9187.2180 kcal/mol (9177.5129 without restraints) Performing minimization step: 1181. Total energy = 9180.7643 kcal/mol (9171.0640 without restraints) Performing minimization step: 1182. Total energy = 9174.3188 kcal/mol (9164.6234 without restraints) Performing minimization step: 1183. Total energy = 9167.8817 kcal/mol (9158.1908 without restraints) Performing minimization step: 1184. Total energy = 9161.4526 kcal/mol (9151.7666 without restraints) Performing minimization step: 1185. Total energy = 9155.0324 kcal/mol (9145.3511 without restraints) Performing minimization step: 1186. Total energy = 9148.6208 kcal/mol (9138.9445 without restraints) Performing minimization step: 1187. Total energy = 9142.2181 kcal/mol (9132.5465 without restraints) Performing minimization step: 1188. Total energy = 9135.8230 kcal/mol (9126.1562 without restraints) Performing minimization step: 1189. Total energy = 9129.4369 kcal/mol (9119.7749 without restraints) Performing minimization step: 1190. Total energy = 9123.0587 kcal/mol (9113.4015 without restraints) Performing minimization step: 1191. Total energy = 9116.6886 kcal/mol (9107.0362 without restraints) Performing minimization step: 1192. Total energy = 9110.3272 kcal/mol (9100.6794 without restraints) Performing minimization step: 1193. Total energy = 9103.9739 kcal/mol (9094.3310 without restraints) Performing minimization step: 1194. Total energy = 9097.6290 kcal/mol (9087.9908 without restraints) Performing minimization step: 1195. Total energy = 9091.2920 kcal/mol (9081.6583 without restraints) Performing minimization step: 1196. Total energy = 9084.9632 kcal/mol (9075.3345 without restraints) Performing minimization step: 1197. Total energy = 9078.6432 kcal/mol (9069.0192 without restraints) Performing minimization step: 1198. Total energy = 9072.3313 kcal/mol (9062.7122 without restraints) Performing minimization step: 1199. Total energy = 9066.0276 kcal/mol (9056.4132 without restraints) Performing minimization step: 1200. Total energy = 9059.7320 kcal/mol (9050.1224 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 9053.4445 kcal/mol (9043.8396 without restraints) Performing minimization step: 1202. Total energy = 9047.1653 kcal/mol (9037.5651 without restraints) Performing minimization step: 1203. Total energy = 9040.8942 kcal/mol (9031.2988 without restraints) Performing minimization step: 1204. Total energy = 9034.6313 kcal/mol (9025.0406 without restraints) Performing minimization step: 1205. Total energy = 9028.3760 kcal/mol (9018.7901 without restraints) Performing minimization step: 1206. Total energy = 9022.1289 kcal/mol (9012.5476 without restraints) Performing minimization step: 1207. Total energy = 9015.8901 kcal/mol (9006.3135 without restraints) Performing minimization step: 1208. Total energy = 9009.6595 kcal/mol (9000.0877 without restraints) Performing minimization step: 1209. Total energy = 9003.4367 kcal/mol (8993.8697 without restraints) Performing minimization step: 1210. Total energy = 8997.2218 kcal/mol (8987.6594 without restraints) Performing minimization step: 1211. Total energy = 8991.0151 kcal/mol (8981.4575 without restraints) Performing minimization step: 1212. Total energy = 8984.8164 kcal/mol (8975.2635 without restraints) Performing minimization step: 1213. Total energy = 8978.6254 kcal/mol (8969.0772 without restraints) Performing minimization step: 1214. Total energy = 8972.4426 kcal/mol (8962.8991 without restraints) Performing minimization step: 1215. Total energy = 8966.2676 kcal/mol (8956.7288 without restraints) Performing minimization step: 1216. Total energy = 8960.1006 kcal/mol (8950.5665 without restraints) Performing minimization step: 1217. Total energy = 8953.9414 kcal/mol (8944.4120 without restraints) Performing minimization step: 1218. Total energy = 8947.7903 kcal/mol (8938.2656 without restraints) Performing minimization step: 1219. Total energy = 8941.6472 kcal/mol (8932.1273 without restraints) Performing minimization step: 1220. Total energy = 8935.5117 kcal/mol (8925.9965 without restraints) Performing minimization step: 1221. Total energy = 8929.3844 kcal/mol (8919.8739 without restraints) Performing minimization step: 1222. Total energy = 8923.2647 kcal/mol (8913.7588 without restraints) Performing minimization step: 1223. Total energy = 8917.1527 kcal/mol (8907.6515 without restraints) Performing minimization step: 1224. Total energy = 8911.0487 kcal/mol (8901.5522 without restraints) Performing minimization step: 1225. Total energy = 8904.9522 kcal/mol (8895.4604 without restraints) Performing minimization step: 1226. Total energy = 8898.8636 kcal/mol (8889.3765 without restraints) Performing minimization step: 1227. Total energy = 8892.7830 kcal/mol (8883.3004 without restraints) Performing minimization step: 1228. Total energy = 8886.7103 kcal/mol (8877.2325 without restraints) Performing minimization step: 1229. Total energy = 8880.6453 kcal/mol (8871.1722 without restraints) Performing minimization step: 1230. Total energy = 8874.5879 kcal/mol (8865.1194 without restraints) Performing minimization step: 1231. Total energy = 8868.5381 kcal/mol (8859.0743 without restraints) Performing minimization step: 1232. Total energy = 8862.4964 kcal/mol (8853.0374 without restraints) Performing minimization step: 1233. Total energy = 8856.4621 kcal/mol (8847.0077 without restraints) Performing minimization step: 1234. Total energy = 8850.4352 kcal/mol (8840.9854 without restraints) Performing minimization step: 1235. Total energy = 8844.4162 kcal/mol (8834.9711 without restraints) Performing minimization step: 1236. Total energy = 8838.4045 kcal/mol (8828.9641 without restraints) Performing minimization step: 1237. Total energy = 8832.4006 kcal/mol (8822.9648 without restraints) Performing minimization step: 1238. Total energy = 8826.4045 kcal/mol (8816.9734 without restraints) Performing minimization step: 1239. Total energy = 8820.4161 kcal/mol (8810.9896 without restraints) Performing minimization step: 1240. Total energy = 8814.4353 kcal/mol (8805.0133 without restraints) Performing minimization step: 1241. Total energy = 8808.4618 kcal/mol (8799.0447 without restraints) Performing minimization step: 1242. Total energy = 8802.4957 kcal/mol (8793.0832 without restraints) Performing minimization step: 1243. Total energy = 8796.5375 kcal/mol (8787.1296 without restraints) Performing minimization step: 1244. Total energy = 8790.5869 kcal/mol (8781.1837 without restraints) Performing minimization step: 1245. Total energy = 8784.6434 kcal/mol (8775.2448 without restraints) Performing minimization step: 1246. Total energy = 8778.7075 kcal/mol (8769.3136 without restraints) Performing minimization step: 1247. Total energy = 8772.7800 kcal/mol (8763.3907 without restraints) Performing minimization step: 1248. Total energy = 8766.8594 kcal/mol (8757.4747 without restraints) Performing minimization step: 1249. Total energy = 8760.9459 kcal/mol (8751.5659 without restraints) Performing minimization step: 1250. Total energy = 8755.0403 kcal/mol (8745.6649 without restraints) Performing minimization step: 1251. Total energy = 8749.1419 kcal/mol (8739.7711 without restraints) Performing minimization step: 1252. Total energy = 8743.2510 kcal/mol (8733.8849 without restraints) Performing minimization step: 1253. Total energy = 8737.3677 kcal/mol (8728.0063 without restraints) Performing minimization step: 1254. Total energy = 8731.4913 kcal/mol (8722.1344 without restraints) Performing minimization step: 1255. Total energy = 8725.6229 kcal/mol (8716.2707 without restraints) Performing minimization step: 1256. Total energy = 8719.7616 kcal/mol (8710.4139 without restraints) Performing minimization step: 1257. Total energy = 8713.9081 kcal/mol (8704.5653 without restraints) Performing minimization step: 1258. Total energy = 8708.0618 kcal/mol (8698.7234 without restraints) Performing minimization step: 1259. Total energy = 8702.2227 kcal/mol (8692.8889 without restraints) Performing minimization step: 1260. Total energy = 8696.3906 kcal/mol (8687.0614 without restraints) Performing minimization step: 1261. Total energy = 8690.5662 kcal/mol (8681.2416 without restraints) Performing minimization step: 1262. Total energy = 8684.7489 kcal/mol (8675.4289 without restraints) Performing minimization step: 1263. Total energy = 8678.9388 kcal/mol (8669.6235 without restraints) Performing minimization step: 1264. Total energy = 8673.1361 kcal/mol (8663.8253 without restraints) Performing minimization step: 1265. Total energy = 8667.3406 kcal/mol (8658.0344 without restraints) Performing minimization step: 1266. Total energy = 8661.5528 kcal/mol (8652.2511 without restraints) Performing minimization step: 1267. Total energy = 8655.7719 kcal/mol (8646.4751 without restraints) Performing minimization step: 1268. Total energy = 8649.9982 kcal/mol (8640.7058 without restraints) Performing minimization step: 1269. Total energy = 8644.2323 kcal/mol (8634.9445 without restraints) Performing minimization step: 1270. Total energy = 8638.4729 kcal/mol (8629.1897 without restraints) Performing minimization step: 1271. Total energy = 8632.7210 kcal/mol (8623.4424 without restraints) Performing minimization step: 1272. Total energy = 8626.9761 kcal/mol (8617.7021 without restraints) Performing minimization step: 1273. Total energy = 8621.2384 kcal/mol (8611.9690 without restraints) Performing minimization step: 1274. Total energy = 8615.5077 kcal/mol (8606.2429 without restraints) Performing minimization step: 1275. Total energy = 8609.7843 kcal/mol (8600.5241 without restraints) Performing minimization step: 1276. Total energy = 8604.0680 kcal/mol (8594.8124 without restraints) Performing minimization step: 1277. Total energy = 8598.3587 kcal/mol (8589.1076 without restraints) Performing minimization step: 1278. Total energy = 8592.6572 kcal/mol (8583.4107 without restraints) Performing minimization step: 1279. Total energy = 8586.9618 kcal/mol (8577.7198 without restraints) Performing minimization step: 1280. Total energy = 8581.2739 kcal/mol (8572.0366 without restraints) Performing minimization step: 1281. Total energy = 8575.5932 kcal/mol (8566.3604 without restraints) Performing minimization step: 1282. Total energy = 8569.9191 kcal/mol (8560.6908 without restraints) Performing minimization step: 1283. Total energy = 8564.2522 kcal/mol (8555.0286 without restraints) Performing minimization step: 1284. Total energy = 8558.5924 kcal/mol (8549.3733 without restraints) Performing minimization step: 1285. Total energy = 8552.9398 kcal/mol (8543.7252 without restraints) Performing minimization step: 1286. Total energy = 8547.2942 kcal/mol (8538.0843 without restraints) Performing minimization step: 1287. Total energy = 8541.6552 kcal/mol (8532.4498 without restraints) Performing minimization step: 1288. Total energy = 8536.0237 kcal/mol (8526.8229 without restraints) Performing minimization step: 1289. Total energy = 8530.3991 kcal/mol (8521.2029 without restraints) Performing minimization step: 1290. Total energy = 8524.7815 kcal/mol (8515.5899 without restraints) Performing minimization step: 1291. Total energy = 8519.1715 kcal/mol (8509.9844 without restraints) Performing minimization step: 1292. Total energy = 8513.5676 kcal/mol (8504.3850 without restraints) Performing minimization step: 1293. Total energy = 8507.9709 kcal/mol (8498.7929 without restraints) Performing minimization step: 1294. Total energy = 8502.3812 kcal/mol (8493.2077 without restraints) Performing minimization step: 1295. Total energy = 8496.7982 kcal/mol (8487.6292 without restraints) Performing minimization step: 1296. Total energy = 8491.2227 kcal/mol (8482.0585 without restraints) Performing minimization step: 1297. Total energy = 8485.6539 kcal/mol (8476.4939 without restraints) Performing minimization step: 1298. Total energy = 8480.0913 kcal/mol (8470.9361 without restraints) Performing minimization step: 1299. Total energy = 8474.5362 kcal/mol (8465.3855 without restraints) Performing minimization step: 1300. Total energy = 8468.9879 kcal/mol (8459.8417 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 8463.4462 kcal/mol (8454.3045 without restraints) Performing minimization step: 1302. Total energy = 8457.9115 kcal/mol (8448.7744 without restraints) Performing minimization step: 1303. Total energy = 8452.3838 kcal/mol (8443.2512 without restraints) Performing minimization step: 1304. Total energy = 8446.8635 kcal/mol (8437.7355 without restraints) Performing minimization step: 1305. Total energy = 8441.3492 kcal/mol (8432.2257 without restraints) Performing minimization step: 1306. Total energy = 8435.8416 kcal/mol (8426.7227 without restraints) Performing minimization step: 1307. Total energy = 8430.3411 kcal/mol (8421.2268 without restraints) Performing minimization step: 1308. Total energy = 8424.8470 kcal/mol (8415.7371 without restraints) Performing minimization step: 1309. Total energy = 8419.3601 kcal/mol (8410.2547 without restraints) Performing minimization step: 1310. Total energy = 8413.8796 kcal/mol (8404.7788 without restraints) Performing minimization step: 1311. Total energy = 8408.4062 kcal/mol (8399.3099 without restraints) Performing minimization step: 1312. Total energy = 8402.9394 kcal/mol (8393.8475 without restraints) Performing minimization step: 1313. Total energy = 8397.4793 kcal/mol (8388.3920 without restraints) Performing minimization step: 1314. Total energy = 8392.0260 kcal/mol (8382.9432 without restraints) Performing minimization step: 1315. Total energy = 8386.5792 kcal/mol (8377.5009 without restraints) Performing minimization step: 1316. Total energy = 8381.1396 kcal/mol (8372.0658 without restraints) Performing minimization step: 1317. Total energy = 8375.7065 kcal/mol (8366.6372 without restraints) Performing minimization step: 1318. Total energy = 8370.2800 kcal/mol (8361.2153 without restraints) Performing minimization step: 1319. Total energy = 8364.8608 kcal/mol (8355.8006 without restraints) Performing minimization step: 1320. Total energy = 8359.4479 kcal/mol (8350.3922 without restraints) Performing minimization step: 1321. Total energy = 8354.0415 kcal/mol (8344.9903 without restraints) Performing minimization step: 1322. Total energy = 8348.6412 kcal/mol (8339.5944 without restraints) Performing minimization step: 1323. Total energy = 8343.2481 kcal/mol (8334.2060 without restraints) Performing minimization step: 1324. Total energy = 8337.8617 kcal/mol (8328.8240 without restraints) Performing minimization step: 1325. Total energy = 8332.4819 kcal/mol (8323.4486 without restraints) Performing minimization step: 1326. Total energy = 8327.1087 kcal/mol (8318.0800 without restraints) Performing minimization step: 1327. Total energy = 8321.7420 kcal/mol (8312.7178 without restraints) Performing minimization step: 1328. Total energy = 8316.3821 kcal/mol (8307.3624 without restraints) Performing minimization step: 1329. Total energy = 8311.0284 kcal/mol (8302.0133 without restraints) Performing minimization step: 1330. Total energy = 8305.6815 kcal/mol (8296.6708 without restraints) Performing minimization step: 1331. Total energy = 8300.3414 kcal/mol (8291.3352 without restraints) Performing minimization step: 1332. Total energy = 8295.0078 kcal/mol (8286.0061 without restraints) Performing minimization step: 1333. Total energy = 8289.6804 kcal/mol (8280.6832 without restraints) Performing minimization step: 1334. Total energy = 8284.3596 kcal/mol (8275.3670 without restraints) Performing minimization step: 1335. Total energy = 8279.0455 kcal/mol (8270.0573 without restraints) Performing minimization step: 1336. Total energy = 8273.7374 kcal/mol (8264.7537 without restraints) Performing minimization step: 1337. Total energy = 8268.4362 kcal/mol (8259.4570 without restraints) Performing minimization step: 1338. Total energy = 8263.1413 kcal/mol (8254.1665 without restraints) Performing minimization step: 1339. Total energy = 8257.8531 kcal/mol (8248.8827 without restraints) Performing minimization step: 1340. Total energy = 8252.5711 kcal/mol (8243.6053 without restraints) Performing minimization step: 1341. Total energy = 8247.2957 kcal/mol (8238.3344 without restraints) Performing minimization step: 1342. Total energy = 8242.0273 kcal/mol (8233.0708 without restraints) Performing minimization step: 1343. Total energy = 8236.7659 kcal/mol (8227.8136 without restraints) Performing minimization step: 1344. Total energy = 8231.5102 kcal/mol (8222.5623 without restraints) Performing minimization step: 1345. Total energy = 8226.2607 kcal/mol (8217.3172 without restraints) Performing minimization step: 1346. Total energy = 8221.0170 kcal/mol (8212.0781 without restraints) Performing minimization step: 1347. Total energy = 8215.7801 kcal/mol (8206.8456 without restraints) Performing minimization step: 1348. Total energy = 8210.5498 kcal/mol (8201.6198 without restraints) Performing minimization step: 1349. Total energy = 8205.3262 kcal/mol (8196.4007 without restraints) Performing minimization step: 1350. Total energy = 8200.1088 kcal/mol (8191.1876 without restraints) Performing minimization step: 1351. Total energy = 8194.8976 kcal/mol (8185.9810 without restraints) Performing minimization step: 1352. Total energy = 8189.6926 kcal/mol (8180.7805 without restraints) Performing minimization step: 1353. Total energy = 8184.4942 kcal/mol (8175.5865 without restraints) Performing minimization step: 1354. Total energy = 8179.3021 kcal/mol (8170.3989 without restraints) Performing minimization step: 1355. Total energy = 8174.1163 kcal/mol (8165.2176 without restraints) Performing minimization step: 1356. Total energy = 8168.9376 kcal/mol (8160.0434 without restraints) Performing minimization step: 1357. Total energy = 8163.7646 kcal/mol (8154.8748 without restraints) Performing minimization step: 1358. Total energy = 8158.5986 kcal/mol (8149.7133 without restraints) Performing minimization step: 1359. Total energy = 8153.4385 kcal/mol (8144.5576 without restraints) Performing minimization step: 1360. Total energy = 8148.2843 kcal/mol (8139.4079 without restraints) Performing minimization step: 1361. Total energy = 8143.1365 kcal/mol (8134.2644 without restraints) Performing minimization step: 1362. Total energy = 8137.9949 kcal/mol (8129.1273 without restraints) Performing minimization step: 1363. Total energy = 8132.8596 kcal/mol (8123.9964 without restraints) Performing minimization step: 1364. Total energy = 8127.7303 kcal/mol (8118.8716 without restraints) Performing minimization step: 1365. Total energy = 8122.6075 kcal/mol (8113.7534 without restraints) Performing minimization step: 1366. Total energy = 8117.4911 kcal/mol (8108.6413 without restraints) Performing minimization step: 1367. Total energy = 8112.3813 kcal/mol (8103.5360 without restraints) Performing minimization step: 1368. Total energy = 8107.2769 kcal/mol (8098.4359 without restraints) Performing minimization step: 1369. Total energy = 8102.1791 kcal/mol (8093.3426 without restraints) Performing minimization step: 1370. Total energy = 8097.0873 kcal/mol (8088.2554 without restraints) Performing minimization step: 1371. Total energy = 8092.0018 kcal/mol (8083.1741 without restraints) Performing minimization step: 1372. Total energy = 8086.9223 kcal/mol (8078.0991 without restraints) Performing minimization step: 1373. Total energy = 8081.8490 kcal/mol (8073.0303 without restraints) Performing minimization step: 1374. Total energy = 8076.7823 kcal/mol (8067.9681 without restraints) Performing minimization step: 1375. Total energy = 8071.7222 kcal/mol (8062.9124 without restraints) Performing minimization step: 1376. Total energy = 8066.6684 kcal/mol (8057.8629 without restraints) Performing minimization step: 1377. Total energy = 8061.6201 kcal/mol (8052.8192 without restraints) Performing minimization step: 1378. Total energy = 8056.5780 kcal/mol (8047.7814 without restraints) Performing minimization step: 1379. Total energy = 8051.5420 kcal/mol (8042.7498 without restraints) Performing minimization step: 1380. Total energy = 8046.5120 kcal/mol (8037.7242 without restraints) Performing minimization step: 1381. Total energy = 8041.4877 kcal/mol (8032.7044 without restraints) Performing minimization step: 1382. Total energy = 8036.4699 kcal/mol (8027.6910 without restraints) Performing minimization step: 1383. Total energy = 8031.4582 kcal/mol (8022.6838 without restraints) Performing minimization step: 1384. Total energy = 8026.4527 kcal/mol (8017.6827 without restraints) Performing minimization step: 1385. Total energy = 8021.4531 kcal/mol (8012.6875 without restraints) Performing minimization step: 1386. Total energy = 8016.4597 kcal/mol (8007.6985 without restraints) Performing minimization step: 1387. Total energy = 8011.4725 kcal/mol (8002.7158 without restraints) Performing minimization step: 1388. Total energy = 8006.4910 kcal/mol (7997.7387 without restraints) Performing minimization step: 1389. Total energy = 8001.5159 kcal/mol (7992.7680 without restraints) Performing minimization step: 1390. Total energy = 7996.5469 kcal/mol (7987.8034 without restraints) Performing minimization step: 1391. Total energy = 7991.5840 kcal/mol (7982.8449 without restraints) Performing minimization step: 1392. Total energy = 7986.6275 kcal/mol (7977.8928 without restraints) Performing minimization step: 1393. Total energy = 7981.6765 kcal/mol (7972.9463 without restraints) Performing minimization step: 1394. Total energy = 7976.7315 kcal/mol (7968.0056 without restraints) Performing minimization step: 1395. Total energy = 7971.7924 kcal/mol (7963.0710 without restraints) Performing minimization step: 1396. Total energy = 7966.8594 kcal/mol (7958.1423 without restraints) Performing minimization step: 1397. Total energy = 7961.9318 kcal/mol (7953.2192 without restraints) Performing minimization step: 1398. Total energy = 7957.0106 kcal/mol (7948.3023 without restraints) Performing minimization step: 1399. Total energy = 7952.0957 kcal/mol (7943.3917 without restraints) Performing minimization step: 1400. Total energy = 7947.1868 kcal/mol (7938.4874 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 7942.2832 kcal/mol (7933.5882 without restraints) Performing minimization step: 1402. Total energy = 7937.3858 kcal/mol (7928.6952 without restraints) Performing minimization step: 1403. Total energy = 7932.4948 kcal/mol (7923.8085 without restraints) Performing minimization step: 1404. Total energy = 7927.6094 kcal/mol (7918.9276 without restraints) Performing minimization step: 1405. Total energy = 7922.7298 kcal/mol (7914.0524 without restraints) Performing minimization step: 1406. Total energy = 7917.8560 kcal/mol (7909.1828 without restraints) Performing minimization step: 1407. Total energy = 7912.9885 kcal/mol (7904.3199 without restraints) Performing minimization step: 1408. Total energy = 7908.1268 kcal/mol (7899.4626 without restraints) Performing minimization step: 1409. Total energy = 7903.2705 kcal/mol (7894.6107 without restraints) Performing minimization step: 1410. Total energy = 7898.4210 kcal/mol (7889.7657 without restraints) Performing minimization step: 1411. Total energy = 7893.5769 kcal/mol (7884.9258 without restraints) Performing minimization step: 1412. Total energy = 7888.7385 kcal/mol (7880.0919 without restraints) Performing minimization step: 1413. Total energy = 7883.9065 kcal/mol (7875.2642 without restraints) Performing minimization step: 1414. Total energy = 7879.0802 kcal/mol (7870.4422 without restraints) Performing minimization step: 1415. Total energy = 7874.2595 kcal/mol (7865.6260 without restraints) Performing minimization step: 1416. Total energy = 7869.4448 kcal/mol (7860.8156 without restraints) Performing minimization step: 1417. Total energy = 7864.6361 kcal/mol (7856.0113 without restraints) Performing minimization step: 1418. Total energy = 7859.8330 kcal/mol (7851.2126 without restraints) Performing minimization step: 1419. Total energy = 7855.0355 kcal/mol (7846.4195 without restraints) Performing minimization step: 1420. Total energy = 7850.2439 kcal/mol (7841.6322 without restraints) Performing minimization step: 1421. Total energy = 7845.4580 kcal/mol (7836.8508 without restraints) Performing minimization step: 1422. Total energy = 7840.6782 kcal/mol (7832.0753 without restraints) Performing minimization step: 1423. Total energy = 7835.9042 kcal/mol (7827.3058 without restraints) Performing minimization step: 1424. Total energy = 7831.1359 kcal/mol (7822.5417 without restraints) Performing minimization step: 1425. Total energy = 7826.3734 kcal/mol (7817.7836 without restraints) Performing minimization step: 1426. Total energy = 7821.6164 kcal/mol (7813.0309 without restraints) Performing minimization step: 1427. Total energy = 7816.8651 kcal/mol (7808.2842 without restraints) Performing minimization step: 1428. Total energy = 7812.1201 kcal/mol (7803.5435 without restraints) Performing minimization step: 1429. Total energy = 7807.3807 kcal/mol (7798.8084 without restraints) Performing minimization step: 1430. Total energy = 7802.6467 kcal/mol (7794.0788 without restraints) Performing minimization step: 1431. Total energy = 7797.9187 kcal/mol (7789.3551 without restraints) Performing minimization step: 1432. Total energy = 7793.1968 kcal/mol (7784.6376 without restraints) Performing minimization step: 1433. Total energy = 7788.4810 kcal/mol (7779.9262 without restraints) Performing minimization step: 1434. Total energy = 7783.7702 kcal/mol (7775.2197 without restraints) Performing minimization step: 1435. Total energy = 7779.0652 kcal/mol (7770.5191 without restraints) Performing minimization step: 1436. Total energy = 7774.3662 kcal/mol (7765.8244 without restraints) Performing minimization step: 1437. Total energy = 7769.6728 kcal/mol (7761.1354 without restraints) Performing minimization step: 1438. Total energy = 7764.9847 kcal/mol (7756.4518 without restraints) Performing minimization step: 1439. Total energy = 7760.3026 kcal/mol (7751.7739 without restraints) Performing minimization step: 1440. Total energy = 7755.6257 kcal/mol (7747.1012 without restraints) Performing minimization step: 1441. Total energy = 7750.9545 kcal/mol (7742.4347 without restraints) Performing minimization step: 1442. Total energy = 7746.2893 kcal/mol (7737.7737 without restraints) Performing minimization step: 1443. Total energy = 7741.6297 kcal/mol (7733.1185 without restraints) Performing minimization step: 1444. Total energy = 7736.9761 kcal/mol (7728.4692 without restraints) Performing minimization step: 1445. Total energy = 7732.3272 kcal/mol (7723.8247 without restraints) Performing minimization step: 1446. Total energy = 7727.6841 kcal/mol (7719.1859 without restraints) Performing minimization step: 1447. Total energy = 7723.0466 kcal/mol (7714.5527 without restraints) Performing minimization step: 1448. Total energy = 7718.4148 kcal/mol (7709.9250 without restraints) Performing minimization step: 1449. Total energy = 7713.7883 kcal/mol (7705.3031 without restraints) Performing minimization step: 1450. Total energy = 7709.1677 kcal/mol (7700.6868 without restraints) Performing minimization step: 1451. Total energy = 7704.5527 kcal/mol (7696.0762 without restraints) Performing minimization step: 1452. Total energy = 7699.9434 kcal/mol (7691.4712 without restraints) Performing minimization step: 1453. Total energy = 7695.3398 kcal/mol (7686.8720 without restraints) Performing minimization step: 1454. Total energy = 7690.7417 kcal/mol (7682.2782 without restraints) Performing minimization step: 1455. Total energy = 7686.1493 kcal/mol (7677.6901 without restraints) Performing minimization step: 1456. Total energy = 7681.5618 kcal/mol (7673.1069 without restraints) Performing minimization step: 1457. Total energy = 7676.9803 kcal/mol (7668.5297 without restraints) Performing minimization step: 1458. Total energy = 7672.4043 kcal/mol (7663.9581 without restraints) Performing minimization step: 1459. Total energy = 7667.8338 kcal/mol (7659.3920 without restraints) Performing minimization step: 1460. Total energy = 7663.2691 kcal/mol (7654.8316 without restraints) Performing minimization step: 1461. Total energy = 7658.7092 kcal/mol (7650.2761 without restraints) Performing minimization step: 1462. Total energy = 7654.1558 kcal/mol (7645.7270 without restraints) Performing minimization step: 1463. Total energy = 7649.6073 kcal/mol (7641.1828 without restraints) Performing minimization step: 1464. Total energy = 7645.0646 kcal/mol (7636.6443 without restraints) Performing minimization step: 1465. Total energy = 7640.5269 kcal/mol (7632.1110 without restraints) Performing minimization step: 1466. Total energy = 7635.9946 kcal/mol (7627.5831 without restraints) Performing minimization step: 1467. Total energy = 7631.4679 kcal/mol (7623.0607 without restraints) Performing minimization step: 1468. Total energy = 7626.9466 kcal/mol (7618.5437 without restraints) Performing minimization step: 1469. Total energy = 7622.4309 kcal/mol (7614.0324 without restraints) Performing minimization step: 1470. Total energy = 7617.9207 kcal/mol (7609.5264 without restraints) Performing minimization step: 1471. Total energy = 7613.4156 kcal/mol (7605.0257 without restraints) Performing minimization step: 1472. Total energy = 7608.9160 kcal/mol (7600.5304 without restraints) Performing minimization step: 1473. Total energy = 7604.4220 kcal/mol (7596.0407 without restraints) Performing minimization step: 1474. Total energy = 7599.9337 kcal/mol (7591.5569 without restraints) Performing minimization step: 1475. Total energy = 7595.4506 kcal/mol (7587.0779 without restraints) Performing minimization step: 1476. Total energy = 7590.9731 kcal/mol (7582.6047 without restraints) Performing minimization step: 1477. Total energy = 7586.5008 kcal/mol (7578.1369 without restraints) Performing minimization step: 1478. Total energy = 7582.0336 kcal/mol (7573.6739 without restraints) Performing minimization step: 1479. Total energy = 7577.5721 kcal/mol (7569.2167 without restraints) Performing minimization step: 1480. Total energy = 7573.1168 kcal/mol (7564.7657 without restraints) Performing minimization step: 1481. Total energy = 7568.6659 kcal/mol (7560.3191 without restraints) Performing minimization step: 1482. Total energy = 7564.2203 kcal/mol (7555.8777 without restraints) Performing minimization step: 1483. Total energy = 7559.7803 kcal/mol (7551.4421 without restraints) Performing minimization step: 1484. Total energy = 7555.3455 kcal/mol (7547.0116 without restraints) Performing minimization step: 1485. Total energy = 7550.9161 kcal/mol (7542.5865 without restraints) Performing minimization step: 1486. Total energy = 7546.4917 kcal/mol (7538.1663 without restraints) Performing minimization step: 1487. Total energy = 7542.0732 kcal/mol (7533.7522 without restraints) Performing minimization step: 1488. Total energy = 7537.6602 kcal/mol (7529.3435 without restraints) Performing minimization step: 1489. Total energy = 7533.2519 kcal/mol (7524.9395 without restraints) Performing minimization step: 1490. Total energy = 7528.8489 kcal/mol (7520.5408 without restraints) Performing minimization step: 1491. Total energy = 7524.4513 kcal/mol (7516.1475 without restraints) Performing minimization step: 1492. Total energy = 7520.0591 kcal/mol (7511.7596 without restraints) Performing minimization step: 1493. Total energy = 7515.6728 kcal/mol (7507.3776 without restraints) Performing minimization step: 1494. Total energy = 7511.2918 kcal/mol (7503.0010 without restraints) Performing minimization step: 1495. Total energy = 7506.9160 kcal/mol (7498.6294 without restraints) Performing minimization step: 1496. Total energy = 7502.5453 kcal/mol (7494.2631 without restraints) Performing minimization step: 1497. Total energy = 7498.1795 kcal/mol (7489.9014 without restraints) Performing minimization step: 1498. Total energy = 7493.8190 kcal/mol (7485.5452 without restraints) Performing minimization step: 1499. Total energy = 7489.4635 kcal/mol (7481.1940 without restraints) Performing minimization step: 1500. Total energy = 7485.1136 kcal/mol (7476.8484 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 7480.7690 kcal/mol (7472.5080 without restraints) Performing minimization step: 1502. Total energy = 7476.4291 kcal/mol (7468.1725 without restraints) Performing minimization step: 1503. Total energy = 7472.0948 kcal/mol (7463.8424 without restraints) Performing minimization step: 1504. Total energy = 7467.7656 kcal/mol (7459.5175 without restraints) Performing minimization step: 1505. Total energy = 7463.4416 kcal/mol (7455.1978 without restraints) Performing minimization step: 1506. Total energy = 7459.1233 kcal/mol (7450.8837 without restraints) Performing minimization step: 1507. Total energy = 7454.8095 kcal/mol (7446.5742 without restraints) Performing minimization step: 1508. Total energy = 7450.5009 kcal/mol (7442.2698 without restraints) Performing minimization step: 1509. Total energy = 7446.1971 kcal/mol (7437.9703 without restraints) Performing minimization step: 1510. Total energy = 7441.8995 kcal/mol (7433.6772 without restraints) Performing minimization step: 1511. Total energy = 7437.6067 kcal/mol (7429.3885 without restraints) Performing minimization step: 1512. Total energy = 7433.3190 kcal/mol (7425.1051 without restraints) Performing minimization step: 1513. Total energy = 7429.0364 kcal/mol (7420.8268 without restraints) Performing minimization step: 1514. Total energy = 7424.7592 kcal/mol (7416.5539 without restraints) Performing minimization step: 1515. Total energy = 7420.4866 kcal/mol (7412.2855 without restraints) Performing minimization step: 1516. Total energy = 7416.2196 kcal/mol (7408.0229 without restraints) Performing minimization step: 1517. Total energy = 7411.9577 kcal/mol (7403.7651 without restraints) Performing minimization step: 1518. Total energy = 7407.7007 kcal/mol (7399.5125 without restraints) Performing minimization step: 1519. Total energy = 7403.4489 kcal/mol (7395.2649 without restraints) Performing minimization step: 1520. Total energy = 7399.2022 kcal/mol (7391.0224 without restraints) Performing minimization step: 1521. Total energy = 7394.9606 kcal/mol (7386.7851 without restraints) Performing minimization step: 1522. Total energy = 7390.7241 kcal/mol (7382.5529 without restraints) Performing minimization step: 1523. Total energy = 7386.4924 kcal/mol (7378.3254 without restraints) Performing minimization step: 1524. Total energy = 7382.2662 kcal/mol (7374.1034 without restraints) Performing minimization step: 1525. Total energy = 7378.0446 kcal/mol (7369.8862 without restraints) Performing minimization step: 1526. Total energy = 7373.8285 kcal/mol (7365.6742 without restraints) Performing minimization step: 1527. Total energy = 7369.6179 kcal/mol (7361.4679 without restraints) Performing minimization step: 1528. Total energy = 7365.4118 kcal/mol (7357.2661 without restraints) Performing minimization step: 1529. Total energy = 7361.2110 kcal/mol (7353.0697 without restraints) Performing minimization step: 1530. Total energy = 7357.0150 kcal/mol (7348.8777 without restraints) Performing minimization step: 1531. Total energy = 7352.8241 kcal/mol (7344.6912 without restraints) Performing minimization step: 1532. Total energy = 7348.6385 kcal/mol (7340.5097 without restraints) Performing minimization step: 1533. Total energy = 7344.4578 kcal/mol (7336.3333 without restraints) Performing minimization step: 1534. Total energy = 7340.2815 kcal/mol (7332.1613 without restraints) Performing minimization step: 1535. Total energy = 7336.1107 kcal/mol (7327.9946 without restraints) Performing minimization step: 1536. Total energy = 7331.9442 kcal/mol (7323.8325 without restraints) Performing minimization step: 1537. Total energy = 7327.7832 kcal/mol (7319.6756 without restraints) Performing minimization step: 1538. Total energy = 7323.6273 kcal/mol (7315.5242 without restraints) Performing minimization step: 1539. Total energy = 7319.4766 kcal/mol (7311.3776 without restraints) Performing minimization step: 1540. Total energy = 7315.3305 kcal/mol (7307.2356 without restraints) Performing minimization step: 1541. Total energy = 7311.1895 kcal/mol (7303.0990 without restraints) Performing minimization step: 1542. Total energy = 7307.0536 kcal/mol (7298.9673 without restraints) Performing minimization step: 1543. Total energy = 7302.9224 kcal/mol (7294.8403 without restraints) Performing minimization step: 1544. Total energy = 7298.7963 kcal/mol (7290.7185 without restraints) Performing minimization step: 1545. Total energy = 7294.6752 kcal/mol (7286.6016 without restraints) Performing minimization step: 1546. Total energy = 7290.5591 kcal/mol (7282.4897 without restraints) Performing minimization step: 1547. Total energy = 7286.4478 kcal/mol (7278.3828 without restraints) Performing minimization step: 1548. Total energy = 7282.3415 kcal/mol (7274.2806 without restraints) Performing minimization step: 1549. Total energy = 7278.2403 kcal/mol (7270.1836 without restraints) Performing minimization step: 1550. Total energy = 7274.1439 kcal/mol (7266.0916 without restraints) Performing minimization step: 1551. Total energy = 7270.0525 kcal/mol (7262.0042 without restraints) Performing minimization step: 1552. Total energy = 7265.9660 kcal/mol (7257.9219 without restraints) Performing minimization step: 1553. Total energy = 7261.8842 kcal/mol (7253.8444 without restraints) Performing minimization step: 1554. Total energy = 7257.8067 kcal/mol (7249.7710 without restraints) Performing minimization step: 1555. Total energy = 7253.7346 kcal/mol (7245.7032 without restraints) Performing minimization step: 1556. Total energy = 7249.6674 kcal/mol (7241.6403 without restraints) Performing minimization step: 1557. Total energy = 7245.6051 kcal/mol (7237.5822 without restraints) Performing minimization step: 1558. Total energy = 7241.5474 kcal/mol (7233.5287 without restraints) Performing minimization step: 1559. Total energy = 7237.4948 kcal/mol (7229.4802 without restraints) Performing minimization step: 1560. Total energy = 7233.4471 kcal/mol (7225.4369 without restraints) Performing minimization step: 1561. Total energy = 7229.4040 kcal/mol (7221.3980 without restraints) Performing minimization step: 1562. Total energy = 7225.3659 kcal/mol (7217.3641 without restraints) Performing minimization step: 1563. Total energy = 7221.3323 kcal/mol (7213.3347 without restraints) Performing minimization step: 1564. Total energy = 7217.3041 kcal/mol (7209.3106 without restraints) Performing minimization step: 1565. Total energy = 7213.2806 kcal/mol (7205.2915 without restraints) Performing minimization step: 1566. Total energy = 7209.2621 kcal/mol (7201.2771 without restraints) Performing minimization step: 1567. Total energy = 7205.2483 kcal/mol (7197.2674 without restraints) Performing minimization step: 1568. Total energy = 7201.2393 kcal/mol (7193.2629 without restraints) Performing minimization step: 1569. Total energy = 7197.2351 kcal/mol (7189.2627 without restraints) Performing minimization step: 1570. Total energy = 7193.2356 kcal/mol (7185.2673 without restraints) Performing minimization step: 1571. Total energy = 7189.2404 kcal/mol (7181.2764 without restraints) Performing minimization step: 1572. Total energy = 7185.2500 kcal/mol (7177.2902 without restraints) Performing minimization step: 1573. Total energy = 7181.2648 kcal/mol (7173.3092 without restraints) Performing minimization step: 1574. Total energy = 7177.2842 kcal/mol (7169.3329 without restraints) Performing minimization step: 1575. Total energy = 7173.3086 kcal/mol (7165.3614 without restraints) Performing minimization step: 1576. Total energy = 7169.3377 kcal/mol (7161.3948 without restraints) Performing minimization step: 1577. Total energy = 7165.3715 kcal/mol (7157.4327 without restraints) Performing minimization step: 1578. Total energy = 7161.4098 kcal/mol (7153.4750 without restraints) Performing minimization step: 1579. Total energy = 7157.4526 kcal/mol (7149.5222 without restraints) Performing minimization step: 1580. Total energy = 7153.5006 kcal/mol (7145.5744 without restraints) Performing minimization step: 1581. Total energy = 7149.5533 kcal/mol (7141.6313 without restraints) Performing minimization step: 1582. Total energy = 7145.6111 kcal/mol (7137.6933 without restraints) Performing minimization step: 1583. Total energy = 7141.6733 kcal/mol (7133.7597 without restraints) Performing minimization step: 1584. Total energy = 7137.7402 kcal/mol (7129.8307 without restraints) Performing minimization step: 1585. Total energy = 7133.8123 kcal/mol (7125.9070 without restraints) Performing minimization step: 1586. Total energy = 7129.8885 kcal/mol (7121.9874 without restraints) Performing minimization step: 1587. Total energy = 7125.9696 kcal/mol (7118.0726 without restraints) Performing minimization step: 1588. Total energy = 7122.0550 kcal/mol (7114.1623 without restraints) Performing minimization step: 1589. Total energy = 7118.1456 kcal/mol (7110.2572 without restraints) Performing minimization step: 1590. Total energy = 7114.2406 kcal/mol (7106.3562 without restraints) Performing minimization step: 1591. Total energy = 7110.3402 kcal/mol (7102.4602 without restraints) Performing minimization step: 1592. Total energy = 7106.4445 kcal/mol (7098.5684 without restraints) Performing minimization step: 1593. Total energy = 7102.5533 kcal/mol (7094.6815 without restraints) Performing minimization step: 1594. Total energy = 7098.6669 kcal/mol (7090.7992 without restraints) Performing minimization step: 1595. Total energy = 7094.7845 kcal/mol (7086.9210 without restraints) Performing minimization step: 1596. Total energy = 7090.9075 kcal/mol (7083.0483 without restraints) Performing minimization step: 1597. Total energy = 7087.0348 kcal/mol (7079.1797 without restraints) Performing minimization step: 1598. Total energy = 7083.1666 kcal/mol (7075.3156 without restraints) Performing minimization step: 1599. Total energy = 7079.3033 kcal/mol (7071.4565 without restraints) Performing minimization step: 1600. Total energy = 7075.4447 kcal/mol (7067.6021 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 7071.5906 kcal/mol (7063.7521 without restraints) Performing minimization step: 1602. Total energy = 7067.7414 kcal/mol (7059.9072 without restraints) Performing minimization step: 1603. Total energy = 7063.8965 kcal/mol (7056.0663 without restraints) Performing minimization step: 1604. Total energy = 7060.0562 kcal/mol (7052.2303 without restraints) Performing minimization step: 1605. Total energy = 7056.2197 kcal/mol (7048.3980 without restraints) Performing minimization step: 1606. Total energy = 7052.3884 kcal/mol (7044.5707 without restraints) Performing minimization step: 1607. Total energy = 7048.5620 kcal/mol (7040.7484 without restraints) Performing minimization step: 1608. Total energy = 7044.7394 kcal/mol (7036.9300 without restraints) Performing minimization step: 1609. Total energy = 7040.9220 kcal/mol (7033.1168 without restraints) Performing minimization step: 1610. Total energy = 7037.1091 kcal/mol (7029.3080 without restraints) Performing minimization step: 1611. Total energy = 7033.3007 kcal/mol (7025.5038 without restraints) Performing minimization step: 1612. Total energy = 7029.4968 kcal/mol (7021.7040 without restraints) Performing minimization step: 1613. Total energy = 7025.6973 kcal/mol (7017.9087 without restraints) Performing minimization step: 1614. Total energy = 7021.9022 kcal/mol (7014.1177 without restraints) Performing minimization step: 1615. Total energy = 7018.1117 kcal/mol (7010.3314 without restraints) Performing minimization step: 1616. Total energy = 7014.3257 kcal/mol (7006.5496 without restraints) Performing minimization step: 1617. Total energy = 7010.5447 kcal/mol (7002.7727 without restraints) Performing minimization step: 1618. Total energy = 7006.7679 kcal/mol (6999.0002 without restraints) Performing minimization step: 1619. Total energy = 7002.9960 kcal/mol (6995.2324 without restraints) Performing minimization step: 1620. Total energy = 6999.2283 kcal/mol (6991.4688 without restraints) Performing minimization step: 1621. Total energy = 6995.4651 kcal/mol (6987.7097 without restraints) Performing minimization step: 1622. Total energy = 6991.7067 kcal/mol (6983.9554 without restraints) Performing minimization step: 1623. Total energy = 6987.9524 kcal/mol (6980.2053 without restraints) Performing minimization step: 1624. Total energy = 6984.2025 kcal/mol (6976.4595 without restraints) Performing minimization step: 1625. Total energy = 6980.4571 kcal/mol (6972.7183 without restraints) Performing minimization step: 1626. Total energy = 6976.7163 kcal/mol (6968.9817 without restraints) Performing minimization step: 1627. Total energy = 6972.9799 kcal/mol (6965.2493 without restraints) Performing minimization step: 1628. Total energy = 6969.2482 kcal/mol (6961.5218 without restraints) Performing minimization step: 1629. Total energy = 6965.5206 kcal/mol (6957.7983 without restraints) Performing minimization step: 1630. Total energy = 6961.7973 kcal/mol (6954.0790 without restraints) Performing minimization step: 1631. Total energy = 6958.0786 kcal/mol (6950.3645 without restraints) Performing minimization step: 1632. Total energy = 6954.3643 kcal/mol (6946.6543 without restraints) Performing minimization step: 1633. Total energy = 6950.6545 kcal/mol (6942.9489 without restraints) Performing minimization step: 1634. Total energy = 6946.9487 kcal/mol (6939.2470 without restraints) Performing minimization step: 1635. Total energy = 6943.2477 kcal/mol (6935.5501 without restraints) Performing minimization step: 1636. Total energy = 6939.5510 kcal/mol (6931.8576 without restraints) Performing minimization step: 1637. Total energy = 6935.8588 kcal/mol (6928.1695 without restraints) Performing minimization step: 1638. Total energy = 6932.1709 kcal/mol (6924.4857 without restraints) Performing minimization step: 1639. Total energy = 6928.4876 kcal/mol (6920.8065 without restraints) Performing minimization step: 1640. Total energy = 6924.8073 kcal/mol (6917.1302 without restraints) Performing minimization step: 1641. Total energy = 6921.1320 kcal/mol (6913.4593 without restraints) Performing minimization step: 1642. Total energy = 6917.4617 kcal/mol (6909.7930 without restraints) Performing minimization step: 1643. Total energy = 6913.7959 kcal/mol (6906.1314 without restraints) Performing minimization step: 1644. Total energy = 6910.1343 kcal/mol (6902.4738 without restraints) Performing minimization step: 1645. Total energy = 6906.4771 kcal/mol (6898.8207 without restraints) Performing minimization step: 1646. Total energy = 6902.8245 kcal/mol (6895.1723 without restraints) Performing minimization step: 1647. Total energy = 6899.1761 kcal/mol (6891.5280 without restraints) Performing minimization step: 1648. Total energy = 6895.5316 kcal/mol (6887.8875 without restraints) Performing minimization step: 1649. Total energy = 6891.8917 kcal/mol (6884.2517 without restraints) Performing minimization step: 1650. Total energy = 6888.2558 kcal/mol (6880.6200 without restraints) Performing minimization step: 1651. Total energy = 6884.6244 kcal/mol (6876.9926 without restraints) Performing minimization step: 1652. Total energy = 6880.9973 kcal/mol (6873.3697 without restraints) Performing minimization step: 1653. Total energy = 6877.3745 kcal/mol (6869.7509 without restraints) Performing minimization step: 1654. Total energy = 6873.7562 kcal/mol (6866.1367 without restraints) Performing minimization step: 1655. Total energy = 6870.1416 kcal/mol (6862.5263 without restraints) Performing minimization step: 1656. Total energy = 6866.5318 kcal/mol (6858.9208 without restraints) Performing minimization step: 1657. Total energy = 6862.9267 kcal/mol (6855.3196 without restraints) Performing minimization step: 1658. Total energy = 6859.3255 kcal/mol (6851.7225 without restraints) Performing minimization step: 1659. Total energy = 6855.7283 kcal/mol (6848.1294 without restraints) Performing minimization step: 1660. Total energy = 6852.1358 kcal/mol (6844.5410 without restraints) Performing minimization step: 1661. Total energy = 6848.5474 kcal/mol (6840.9567 without restraints) Performing minimization step: 1662. Total energy = 6844.9634 kcal/mol (6837.3769 without restraints) Performing minimization step: 1663. Total energy = 6841.3829 kcal/mol (6833.8004 without restraints) Performing minimization step: 1664. Total energy = 6837.8073 kcal/mol (6830.2288 without restraints) Performing minimization step: 1665. Total energy = 6834.2359 kcal/mol (6826.6615 without restraints) Performing minimization step: 1666. Total energy = 6830.6690 kcal/mol (6823.0987 without restraints) Performing minimization step: 1667. Total energy = 6827.1057 kcal/mol (6819.5394 without restraints) Performing minimization step: 1668. Total energy = 6823.5471 kcal/mol (6815.9850 without restraints) Performing minimization step: 1669. Total energy = 6819.9926 kcal/mol (6812.4346 without restraints) Performing minimization step: 1670. Total energy = 6816.4428 kcal/mol (6808.8889 without restraints) Performing minimization step: 1671. Total energy = 6812.8967 kcal/mol (6805.3467 without restraints) Performing minimization step: 1672. Total energy = 6809.3548 kcal/mol (6801.8093 without restraints) Performing minimization step: 1673. Total energy = 6805.8173 kcal/mol (6798.2756 without restraints) Performing minimization step: 1674. Total energy = 6802.2841 kcal/mol (6794.7465 without restraints) Performing minimization step: 1675. Total energy = 6798.7549 kcal/mol (6791.2213 without restraints) Performing minimization step: 1676. Total energy = 6795.2298 kcal/mol (6787.7003 without restraints) Performing minimization step: 1677. Total energy = 6791.7089 kcal/mol (6784.1835 without restraints) Performing minimization step: 1678. Total energy = 6788.1925 kcal/mol (6780.6712 without restraints) Performing minimization step: 1679. Total energy = 6784.6798 kcal/mol (6777.1625 without restraints) Performing minimization step: 1680. Total energy = 6781.1714 kcal/mol (6773.6582 without restraints) Performing minimization step: 1681. Total energy = 6777.6670 kcal/mol (6770.1579 without restraints) Performing minimization step: 1682. Total energy = 6774.1672 kcal/mol (6766.6622 without restraints) Performing minimization step: 1683. Total energy = 6770.6708 kcal/mol (6763.1698 without restraints) Performing minimization step: 1684. Total energy = 6767.1793 kcal/mol (6759.6824 without restraints) Performing minimization step: 1685. Total energy = 6763.6919 kcal/mol (6756.1990 without restraints) Performing minimization step: 1686. Total energy = 6760.2082 kcal/mol (6752.7194 without restraints) Performing minimization step: 1687. Total energy = 6756.7293 kcal/mol (6749.2446 without restraints) Performing minimization step: 1688. Total energy = 6753.2543 kcal/mol (6745.7737 without restraints) Performing minimization step: 1689. Total energy = 6749.7830 kcal/mol (6742.3064 without restraints) Performing minimization step: 1690. Total energy = 6746.3161 kcal/mol (6738.8435 without restraints) Performing minimization step: 1691. Total energy = 6742.8532 kcal/mol (6735.3848 without restraints) Performing minimization step: 1692. Total energy = 6739.3953 kcal/mol (6731.9310 without restraints) Performing minimization step: 1693. Total energy = 6735.9413 kcal/mol (6728.4810 without restraints) Performing minimization step: 1694. Total energy = 6732.4909 kcal/mol (6725.0347 without restraints) Performing minimization step: 1695. Total energy = 6729.0447 kcal/mol (6721.5925 without restraints) Performing minimization step: 1696. Total energy = 6725.6025 kcal/mol (6718.1543 without restraints) Performing minimization step: 1697. Total energy = 6722.1646 kcal/mol (6714.7205 without restraints) Performing minimization step: 1698. Total energy = 6718.7302 kcal/mol (6711.2900 without restraints) Performing minimization step: 1699. Total energy = 6715.3000 kcal/mol (6707.8640 without restraints) Performing minimization step: 1700. Total energy = 6711.8743 kcal/mol (6704.4423 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 6708.4525 kcal/mol (6701.0244 without restraints) Performing minimization step: 1702. Total energy = 6705.0343 kcal/mol (6697.6102 without restraints) Performing minimization step: 1703. Total energy = 6701.6205 kcal/mol (6694.2006 without restraints) Performing minimization step: 1704. Total energy = 6698.2108 kcal/mol (6690.7949 without restraints) Performing minimization step: 1705. Total energy = 6694.8050 kcal/mol (6687.3932 without restraints) Performing minimization step: 1706. Total energy = 6691.4033 kcal/mol (6683.9955 without restraints) Performing minimization step: 1707. Total energy = 6688.0057 kcal/mol (6680.6019 without restraints) Performing minimization step: 1708. Total energy = 6684.6119 kcal/mol (6677.2120 without restraints) Performing minimization step: 1709. Total energy = 6681.2221 kcal/mol (6673.8264 without restraints) Performing minimization step: 1710. Total energy = 6677.8362 kcal/mol (6670.4446 without restraints) Performing minimization step: 1711. Total energy = 6674.4546 kcal/mol (6667.0670 without restraints) Performing minimization step: 1712. Total energy = 6671.0772 kcal/mol (6663.6937 without restraints) Performing minimization step: 1713. Total energy = 6667.7037 kcal/mol (6660.3242 without restraints) Performing minimization step: 1714. Total energy = 6664.3349 kcal/mol (6656.9592 without restraints) Performing minimization step: 1715. Total energy = 6660.9691 kcal/mol (6653.5976 without restraints) Performing minimization step: 1716. Total energy = 6657.6074 kcal/mol (6650.2400 without restraints) Performing minimization step: 1717. Total energy = 6654.2497 kcal/mol (6646.8862 without restraints) Performing minimization step: 1718. Total energy = 6650.8958 kcal/mol (6643.5363 without restraints) Performing minimization step: 1719. Total energy = 6647.5456 kcal/mol (6640.1902 without restraints) Performing minimization step: 1720. Total energy = 6644.1996 kcal/mol (6636.8482 without restraints) Performing minimization step: 1721. Total energy = 6640.8573 kcal/mol (6633.5099 without restraints) Performing minimization step: 1722. Total energy = 6637.5195 kcal/mol (6630.1761 without restraints) Performing minimization step: 1723. Total energy = 6634.1856 kcal/mol (6626.8462 without restraints) Performing minimization step: 1724. Total energy = 6630.8556 kcal/mol (6623.5202 without restraints) Performing minimization step: 1725. Total energy = 6627.5291 kcal/mol (6620.1978 without restraints) Performing minimization step: 1726. Total energy = 6624.2068 kcal/mol (6616.8795 without restraints) Performing minimization step: 1727. Total energy = 6620.8887 kcal/mol (6613.5655 without restraints) Performing minimization step: 1728. Total energy = 6617.5745 kcal/mol (6610.2552 without restraints) Performing minimization step: 1729. Total energy = 6614.2641 kcal/mol (6606.9489 without restraints) Performing minimization step: 1730. Total energy = 6610.9578 kcal/mol (6603.6465 without restraints) Performing minimization step: 1731. Total energy = 6607.6555 kcal/mol (6600.3483 without restraints) Performing minimization step: 1732. Total energy = 6604.3566 kcal/mol (6597.0532 without restraints) Performing minimization step: 1733. Total energy = 6601.0618 kcal/mol (6593.7626 without restraints) Performing minimization step: 1734. Total energy = 6597.7709 kcal/mol (6590.4756 without restraints) Performing minimization step: 1735. Total energy = 6594.4839 kcal/mol (6587.1927 without restraints) Performing minimization step: 1736. Total energy = 6591.2010 kcal/mol (6583.9138 without restraints) Performing minimization step: 1737. Total energy = 6587.9228 kcal/mol (6580.6395 without restraints) Performing minimization step: 1738. Total energy = 6584.6478 kcal/mol (6577.3686 without restraints) Performing minimization step: 1739. Total energy = 6581.3766 kcal/mol (6574.1013 without restraints) Performing minimization step: 1740. Total energy = 6578.1088 kcal/mol (6570.8375 without restraints) Performing minimization step: 1741. Total energy = 6574.8452 kcal/mol (6567.5779 without restraints) Performing minimization step: 1742. Total energy = 6571.5854 kcal/mol (6564.3222 without restraints) Performing minimization step: 1743. Total energy = 6568.3296 kcal/mol (6561.0704 without restraints) Performing minimization step: 1744. Total energy = 6565.0777 kcal/mol (6557.8224 without restraints) Performing minimization step: 1745. Total energy = 6561.8292 kcal/mol (6554.5779 without restraints) Performing minimization step: 1746. Total energy = 6558.5848 kcal/mol (6551.3374 without restraints) Performing minimization step: 1747. Total energy = 6555.3445 kcal/mol (6548.1012 without restraints) Performing minimization step: 1748. Total energy = 6552.1077 kcal/mol (6544.8685 without restraints) Performing minimization step: 1749. Total energy = 6548.8749 kcal/mol (6541.6396 without restraints) Performing minimization step: 1750. Total energy = 6545.6457 kcal/mol (6538.4144 without restraints) Performing minimization step: 1751. Total energy = 6542.4205 kcal/mol (6535.1931 without restraints) Performing minimization step: 1752. Total energy = 6539.1989 kcal/mol (6531.9754 without restraints) Performing minimization step: 1753. Total energy = 6535.9815 kcal/mol (6528.7622 without restraints) Performing minimization step: 1754. Total energy = 6532.7677 kcal/mol (6525.5521 without restraints) Performing minimization step: 1755. Total energy = 6529.5577 kcal/mol (6522.3463 without restraints) Performing minimization step: 1756. Total energy = 6526.3514 kcal/mol (6519.1440 without restraints) Performing minimization step: 1757. Total energy = 6523.1490 kcal/mol (6515.9456 without restraints) Performing minimization step: 1758. Total energy = 6519.9502 kcal/mol (6512.7506 without restraints) Performing minimization step: 1759. Total energy = 6516.7551 kcal/mol (6509.5595 without restraints) Performing minimization step: 1760. Total energy = 6513.5639 kcal/mol (6506.3723 without restraints) Performing minimization step: 1761. Total energy = 6510.3767 kcal/mol (6503.1891 without restraints) Performing minimization step: 1762. Total energy = 6507.1932 kcal/mol (6500.0097 without restraints) Performing minimization step: 1763. Total energy = 6504.0135 kcal/mol (6496.8338 without restraints) Performing minimization step: 1764. Total energy = 6500.8374 kcal/mol (6493.6615 without restraints) Performing minimization step: 1765. Total energy = 6497.6650 kcal/mol (6490.4932 without restraints) Performing minimization step: 1766. Total energy = 6494.4965 kcal/mol (6487.3288 without restraints) Performing minimization step: 1767. Total energy = 6491.3320 kcal/mol (6484.1682 without restraints) Performing minimization step: 1768. Total energy = 6488.1708 kcal/mol (6481.0109 without restraints) Performing minimization step: 1769. Total energy = 6485.0136 kcal/mol (6477.8578 without restraints) Performing minimization step: 1770. Total energy = 6481.8599 kcal/mol (6474.7079 without restraints) Performing minimization step: 1771. Total energy = 6478.7110 kcal/mol (6471.5630 without restraints) Performing minimization step: 1772. Total energy = 6475.5646 kcal/mol (6468.4206 without restraints) Performing minimization step: 1773. Total energy = 6472.4223 kcal/mol (6465.2823 without restraints) Performing minimization step: 1774. Total energy = 6469.2840 kcal/mol (6462.1480 without restraints) Performing minimization step: 1775. Total energy = 6466.1489 kcal/mol (6459.0167 without restraints) Performing minimization step: 1776. Total energy = 6463.0176 kcal/mol (6455.8893 without restraints) Performing minimization step: 1777. Total energy = 6459.8901 kcal/mol (6452.7657 without restraints) Performing minimization step: 1778. Total energy = 6456.7661 kcal/mol (6449.6457 without restraints) Performing minimization step: 1779. Total energy = 6453.6458 kcal/mol (6446.5294 without restraints) Performing minimization step: 1780. Total energy = 6450.5293 kcal/mol (6443.4168 without restraints) Performing minimization step: 1781. Total energy = 6447.4163 kcal/mol (6440.3077 without restraints) Performing minimization step: 1782. Total energy = 6444.3074 kcal/mol (6437.2027 without restraints) Performing minimization step: 1783. Total energy = 6441.2018 kcal/mol (6434.1012 without restraints) Performing minimization step: 1784. Total energy = 6438.0999 kcal/mol (6431.0032 without restraints) Performing minimization step: 1785. Total energy = 6435.0017 kcal/mol (6427.9089 without restraints) Performing minimization step: 1786. Total energy = 6431.9071 kcal/mol (6424.8183 without restraints) Performing minimization step: 1787. Total energy = 6428.8163 kcal/mol (6421.7316 without restraints) Performing minimization step: 1788. Total energy = 6425.7292 kcal/mol (6418.6482 without restraints) Performing minimization step: 1789. Total energy = 6422.6457 kcal/mol (6415.5687 without restraints) Performing minimization step: 1790. Total energy = 6419.5658 kcal/mol (6412.4926 without restraints) Performing minimization step: 1791. Total energy = 6416.4896 kcal/mol (6409.4204 without restraints) Performing minimization step: 1792. Total energy = 6413.4168 kcal/mol (6406.3515 without restraints) Performing minimization step: 1793. Total energy = 6410.3477 kcal/mol (6403.2864 without restraints) Performing minimization step: 1794. Total energy = 6407.2819 kcal/mol (6400.2245 without restraints) Performing minimization step: 1795. Total energy = 6404.2201 kcal/mol (6397.1666 without restraints) Performing minimization step: 1796. Total energy = 6401.1618 kcal/mol (6394.1123 without restraints) Performing minimization step: 1797. Total energy = 6398.1076 kcal/mol (6391.0619 without restraints) Performing minimization step: 1798. Total energy = 6395.0565 kcal/mol (6388.0148 without restraints) Performing minimization step: 1799. Total energy = 6392.0089 kcal/mol (6384.9710 without restraints) Performing minimization step: 1800. Total energy = 6388.9650 kcal/mol (6381.9311 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 6385.9247 kcal/mol (6378.8947 without restraints) Performing minimization step: 1802. Total energy = 6382.8880 kcal/mol (6375.8620 without restraints) Performing minimization step: 1803. Total energy = 6379.8547 kcal/mol (6372.8326 without restraints) Performing minimization step: 1804. Total energy = 6376.8252 kcal/mol (6369.8069 without restraints) Performing minimization step: 1805. Total energy = 6373.7992 kcal/mol (6366.7848 without restraints) Performing minimization step: 1806. Total energy = 6370.7766 kcal/mol (6363.7663 without restraints) Performing minimization step: 1807. Total energy = 6367.7581 kcal/mol (6360.7516 without restraints) Performing minimization step: 1808. Total energy = 6364.7431 kcal/mol (6357.7405 without restraints) Performing minimization step: 1809. Total energy = 6361.7314 kcal/mol (6354.7327 without restraints) Performing minimization step: 1810. Total energy = 6358.7235 kcal/mol (6351.7287 without restraints) Performing minimization step: 1811. Total energy = 6355.7188 kcal/mol (6348.7279 without restraints) Performing minimization step: 1812. Total energy = 6352.7175 kcal/mol (6345.7304 without restraints) Performing minimization step: 1813. Total energy = 6349.7203 kcal/mol (6342.7374 without restraints) Performing minimization step: 1814. Total energy = 6346.7266 kcal/mol (6339.7474 without restraints) Performing minimization step: 1815. Total energy = 6343.7361 kcal/mol (6336.7608 without restraints) Performing minimization step: 1816. Total energy = 6340.7492 kcal/mol (6333.7778 without restraints) Performing minimization step: 1817. Total energy = 6337.7659 kcal/mol (6330.7983 without restraints) Performing minimization step: 1818. Total energy = 6334.7859 kcal/mol (6327.8223 without restraints) Performing minimization step: 1819. Total energy = 6331.8093 kcal/mol (6324.8496 without restraints) Performing minimization step: 1820. Total energy = 6328.8366 kcal/mol (6321.8807 without restraints) Performing minimization step: 1821. Total energy = 6325.8668 kcal/mol (6318.9148 without restraints) Performing minimization step: 1822. Total energy = 6322.9006 kcal/mol (6315.9526 without restraints) Performing minimization step: 1823. Total energy = 6319.9382 kcal/mol (6312.9941 without restraints) Performing minimization step: 1824. Total energy = 6316.9794 kcal/mol (6310.0393 without restraints) Performing minimization step: 1825. Total energy = 6314.0240 kcal/mol (6307.0876 without restraints) Performing minimization step: 1826. Total energy = 6311.0717 kcal/mol (6304.1392 without restraints) Performing minimization step: 1827. Total energy = 6308.1232 kcal/mol (6301.1945 without restraints) Performing minimization step: 1828. Total energy = 6305.1783 kcal/mol (6298.2535 without restraints) Performing minimization step: 1829. Total energy = 6302.2364 kcal/mol (6295.3156 without restraints) Performing minimization step: 1830. Total energy = 6299.2982 kcal/mol (6292.3812 without restraints) Performing minimization step: 1831. Total energy = 6296.3633 kcal/mol (6289.4500 without restraints) Performing minimization step: 1832. Total energy = 6293.4317 kcal/mol (6286.5224 without restraints) Performing minimization step: 1833. Total energy = 6290.5039 kcal/mol (6283.5985 without restraints) Performing minimization step: 1834. Total energy = 6287.5795 kcal/mol (6280.6780 without restraints) Performing minimization step: 1835. Total energy = 6284.6588 kcal/mol (6277.7612 without restraints) Performing minimization step: 1836. Total energy = 6281.7407 kcal/mol (6274.8469 without restraints) Performing minimization step: 1837. Total energy = 6278.8266 kcal/mol (6271.9367 without restraints) Performing minimization step: 1838. Total energy = 6275.9160 kcal/mol (6269.0299 without restraints) Performing minimization step: 1839. Total energy = 6273.0085 kcal/mol (6266.1264 without restraints) Performing minimization step: 1840. Total energy = 6270.1045 kcal/mol (6263.2262 without restraints) Performing minimization step: 1841. Total energy = 6267.2041 kcal/mol (6260.3296 without restraints) Performing minimization step: 1842. Total energy = 6264.3074 kcal/mol (6257.4368 without restraints) Performing minimization step: 1843. Total energy = 6261.4140 kcal/mol (6254.5472 without restraints) Performing minimization step: 1844. Total energy = 6258.5235 kcal/mol (6251.6606 without restraints) Performing minimization step: 1845. Total energy = 6255.6369 kcal/mol (6248.7779 without restraints) Performing minimization step: 1846. Total energy = 6252.7531 kcal/mol (6245.8978 without restraints) Performing minimization step: 1847. Total energy = 6249.8724 kcal/mol (6243.0211 without restraints) Performing minimization step: 1848. Total energy = 6246.9962 kcal/mol (6240.1487 without restraints) Performing minimization step: 1849. Total energy = 6244.1231 kcal/mol (6237.2795 without restraints) Performing minimization step: 1850. Total energy = 6241.2532 kcal/mol (6234.4134 without restraints) Performing minimization step: 1851. Total energy = 6238.3873 kcal/mol (6231.5514 without restraints) Performing minimization step: 1852. Total energy = 6235.5245 kcal/mol (6228.6925 without restraints) Performing minimization step: 1853. Total energy = 6232.6652 kcal/mol (6225.8371 without restraints) Performing minimization step: 1854. Total energy = 6229.8087 kcal/mol (6222.9843 without restraints) Performing minimization step: 1855. Total energy = 6226.9553 kcal/mol (6220.1348 without restraints) Performing minimization step: 1856. Total energy = 6224.1055 kcal/mol (6217.2888 without restraints) Performing minimization step: 1857. Total energy = 6221.2590 kcal/mol (6214.4462 without restraints) Performing minimization step: 1858. Total energy = 6218.4160 kcal/mol (6211.6070 without restraints) Performing minimization step: 1859. Total energy = 6215.5762 kcal/mol (6208.7710 without restraints) Performing minimization step: 1860. Total energy = 6212.7398 kcal/mol (6205.9384 without restraints) Performing minimization step: 1861. Total energy = 6209.9067 kcal/mol (6203.1091 without restraints) Performing minimization step: 1862. Total energy = 6207.0768 kcal/mol (6200.2830 without restraints) Performing minimization step: 1863. Total energy = 6204.2502 kcal/mol (6197.4603 without restraints) Performing minimization step: 1864. Total energy = 6201.4272 kcal/mol (6194.6413 without restraints) Performing minimization step: 1865. Total energy = 6198.6077 kcal/mol (6191.8255 without restraints) Performing minimization step: 1866. Total energy = 6195.7912 kcal/mol (6189.0128 without restraints) Performing minimization step: 1867. Total energy = 6192.9777 kcal/mol (6186.2031 without restraints) Performing minimization step: 1868. Total energy = 6190.1677 kcal/mol (6183.3969 without restraints) Performing minimization step: 1869. Total energy = 6187.3616 kcal/mol (6180.5949 without restraints) Performing minimization step: 1870. Total energy = 6184.5586 kcal/mol (6177.7955 without restraints) Performing minimization step: 1871. Total energy = 6181.7585 kcal/mol (6174.9992 without restraints) Performing minimization step: 1872. Total energy = 6178.9617 kcal/mol (6172.2063 without restraints) Performing minimization step: 1873. Total energy = 6176.1682 kcal/mol (6169.4166 without restraints) Performing minimization step: 1874. Total energy = 6173.3778 kcal/mol (6166.6299 without restraints) Performing minimization step: 1875. Total energy = 6170.5903 kcal/mol (6163.8462 without restraints) Performing minimization step: 1876. Total energy = 6167.8067 kcal/mol (6161.0665 without restraints) Performing minimization step: 1877. Total energy = 6165.0264 kcal/mol (6158.2901 without restraints) Performing minimization step: 1878. Total energy = 6162.2490 kcal/mol (6155.5165 without restraints) Performing minimization step: 1879. Total energy = 6159.4751 kcal/mol (6152.7463 without restraints) Performing minimization step: 1880. Total energy = 6156.7045 kcal/mol (6149.9795 without restraints) Performing minimization step: 1881. Total energy = 6153.9370 kcal/mol (6147.2158 without restraints) Performing minimization step: 1882. Total energy = 6151.1728 kcal/mol (6144.4553 without restraints) Performing minimization step: 1883. Total energy = 6148.4115 kcal/mol (6141.6980 without restraints) Performing minimization step: 1884. Total energy = 6145.6540 kcal/mol (6138.9444 without restraints) Performing minimization step: 1885. Total energy = 6142.8997 kcal/mol (6136.1938 without restraints) Performing minimization step: 1886. Total energy = 6140.1488 kcal/mol (6133.4467 without restraints) Performing minimization step: 1887. Total energy = 6137.4009 kcal/mol (6130.7025 without restraints) Performing minimization step: 1888. Total energy = 6134.6565 kcal/mol (6127.9622 without restraints) Performing minimization step: 1889. Total energy = 6131.9150 kcal/mol (6125.2242 without restraints) Performing minimization step: 1890. Total energy = 6129.1762 kcal/mol (6122.4892 without restraints) Performing minimization step: 1891. Total energy = 6126.4410 kcal/mol (6119.7580 without restraints) Performing minimization step: 1892. Total energy = 6123.7092 kcal/mol (6117.0298 without restraints) Performing minimization step: 1893. Total energy = 6120.9804 kcal/mol (6114.3047 without restraints) Performing minimization step: 1894. Total energy = 6118.2550 kcal/mol (6111.5832 without restraints) Performing minimization step: 1895. Total energy = 6115.5324 kcal/mol (6108.8643 without restraints) Performing minimization step: 1896. Total energy = 6112.8138 kcal/mol (6106.1495 without restraints) Performing minimization step: 1897. Total energy = 6110.0974 kcal/mol (6103.4369 without restraints) Performing minimization step: 1898. Total energy = 6107.3843 kcal/mol (6100.7276 without restraints) Performing minimization step: 1899. Total energy = 6104.6744 kcal/mol (6098.0215 without restraints) Performing minimization step: 1900. Total energy = 6101.9674 kcal/mol (6095.3183 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 6099.2643 kcal/mol (6092.6189 without restraints) Performing minimization step: 1902. Total energy = 6096.5638 kcal/mol (6089.9222 without restraints) Performing minimization step: 1903. Total energy = 6093.8667 kcal/mol (6087.2289 without restraints) Performing minimization step: 1904. Total energy = 6091.1729 kcal/mol (6084.5388 without restraints) Performing minimization step: 1905. Total energy = 6088.4822 kcal/mol (6081.8520 without restraints) Performing minimization step: 1906. Total energy = 6085.7948 kcal/mol (6079.1683 without restraints) Performing minimization step: 1907. Total energy = 6083.1101 kcal/mol (6076.4873 without restraints) Performing minimization step: 1908. Total energy = 6080.4287 kcal/mol (6073.8098 without restraints) Performing minimization step: 1909. Total energy = 6077.7509 kcal/mol (6071.1357 without restraints) Performing minimization step: 1910. Total energy = 6075.0753 kcal/mol (6068.4639 without restraints) Performing minimization step: 1911. Total energy = 6072.4032 kcal/mol (6065.7956 without restraints) Performing minimization step: 1912. Total energy = 6069.7345 kcal/mol (6063.1306 without restraints) Performing minimization step: 1913. Total energy = 6067.0689 kcal/mol (6060.4688 without restraints) Performing minimization step: 1914. Total energy = 6064.4061 kcal/mol (6057.8097 without restraints) Performing minimization step: 1915. Total energy = 6061.7467 kcal/mol (6055.1541 without restraints) Performing minimization step: 1916. Total energy = 6059.0900 kcal/mol (6052.5011 without restraints) Performing minimization step: 1917. Total energy = 6056.4363 kcal/mol (6049.8512 without restraints) Performing minimization step: 1918. Total energy = 6053.7862 kcal/mol (6047.2050 without restraints) Performing minimization step: 1919. Total energy = 6051.1390 kcal/mol (6044.5614 without restraints) Performing minimization step: 1920. Total energy = 6048.4945 kcal/mol (6041.9207 without restraints) Performing minimization step: 1921. Total energy = 6045.8532 kcal/mol (6039.2831 without restraints) Performing minimization step: 1922. Total energy = 6043.2152 kcal/mol (6036.6489 without restraints) Performing minimization step: 1923. Total energy = 6040.5800 kcal/mol (6034.0174 without restraints) Performing minimization step: 1924. Total energy = 6037.9485 kcal/mol (6031.3896 without restraints) Performing minimization step: 1925. Total energy = 6035.3192 kcal/mol (6028.7641 without restraints) Performing minimization step: 1926. Total energy = 6032.6937 kcal/mol (6026.1421 without restraints) Performing minimization step: 1927. Total energy = 6030.0705 kcal/mol (6023.5229 without restraints) Performing minimization step: 1928. Total energy = 6027.4504 kcal/mol (6020.9065 without restraints) Performing minimization step: 1929. Total energy = 6024.8337 kcal/mol (6018.2935 without restraints) Performing minimization step: 1930. Total energy = 6022.2198 kcal/mol (6015.6834 without restraints) Performing minimization step: 1931. Total energy = 6019.6094 kcal/mol (6013.0768 without restraints) Performing minimization step: 1932. Total energy = 6017.0017 kcal/mol (6010.4727 without restraints) Performing minimization step: 1933. Total energy = 6014.3968 kcal/mol (6007.8715 without restraints) Performing minimization step: 1934. Total energy = 6011.7950 kcal/mol (6005.2735 without restraints) Performing minimization step: 1935. Total energy = 6009.1965 kcal/mol (6002.6788 without restraints) Performing minimization step: 1936. Total energy = 6006.6009 kcal/mol (6000.0868 without restraints) Performing minimization step: 1937. Total energy = 6004.0087 kcal/mol (5997.4981 without restraints) Performing minimization step: 1938. Total energy = 6001.4188 kcal/mol (5994.9122 without restraints) Performing minimization step: 1939. Total energy = 5998.8323 kcal/mol (5992.3294 without restraints) Performing minimization step: 1940. Total energy = 5996.2487 kcal/mol (5989.7495 without restraints) Performing minimization step: 1941. Total energy = 5993.6682 kcal/mol (5987.1727 without restraints) Performing minimization step: 1942. Total energy = 5991.0905 kcal/mol (5984.5987 without restraints) Performing minimization step: 1943. Total energy = 5988.5158 kcal/mol (5982.0277 without restraints) Performing minimization step: 1944. Total energy = 5985.9442 kcal/mol (5979.4599 without restraints) Performing minimization step: 1945. Total energy = 5983.3755 kcal/mol (5976.8949 without restraints) Performing minimization step: 1946. Total energy = 5980.8094 kcal/mol (5974.3326 without restraints) Performing minimization step: 1947. Total energy = 5978.2468 kcal/mol (5971.7736 without restraints) Performing minimization step: 1948. Total energy = 5975.6872 kcal/mol (5969.2177 without restraints) Performing minimization step: 1949. Total energy = 5973.1302 kcal/mol (5966.6643 without restraints) Performing minimization step: 1950. Total energy = 5970.5768 kcal/mol (5964.1147 without restraints) Performing minimization step: 1951. Total energy = 5968.0256 kcal/mol (5961.5672 without restraints) Performing minimization step: 1952. Total energy = 5965.4774 kcal/mol (5959.0226 without restraints) Performing minimization step: 1953. Total energy = 5962.9322 kcal/mol (5956.4812 without restraints) Performing minimization step: 1954. Total energy = 5960.3903 kcal/mol (5953.9430 without restraints) Performing minimization step: 1955. Total energy = 5957.8510 kcal/mol (5951.4075 without restraints) Performing minimization step: 1956. Total energy = 5955.3151 kcal/mol (5948.8752 without restraints) Performing minimization step: 1957. Total energy = 5952.7814 kcal/mol (5946.3452 without restraints) Performing minimization step: 1958. Total energy = 5950.2509 kcal/mol (5943.8183 without restraints) Performing minimization step: 1959. Total energy = 5947.7232 kcal/mol (5941.2944 without restraints) Performing minimization step: 1960. Total energy = 5945.1988 kcal/mol (5938.7737 without restraints) Performing minimization step: 1961. Total energy = 5942.6775 kcal/mol (5936.2563 without restraints) Performing minimization step: 1962. Total energy = 5940.1592 kcal/mol (5933.7415 without restraints) Performing minimization step: 1963. Total energy = 5937.6436 kcal/mol (5931.2296 without restraints) Performing minimization step: 1964. Total energy = 5935.1306 kcal/mol (5928.7204 without restraints) Performing minimization step: 1965. Total energy = 5932.6203 kcal/mol (5926.2134 without restraints) Performing minimization step: 1966. Total energy = 5930.1132 kcal/mol (5923.7102 without restraints) Performing minimization step: 1967. Total energy = 5927.6091 kcal/mol (5921.2098 without restraints) Performing minimization step: 1968. Total energy = 5925.1076 kcal/mol (5918.7120 without restraints) Performing minimization step: 1969. Total energy = 5922.6093 kcal/mol (5916.2172 without restraints) Performing minimization step: 1970. Total energy = 5920.1133 kcal/mol (5913.7250 without restraints) Performing minimization step: 1971. Total energy = 5917.6208 kcal/mol (5911.2361 without restraints) Performing minimization step: 1972. Total energy = 5915.1309 kcal/mol (5908.7499 without restraints) Performing minimization step: 1973. Total energy = 5912.6441 kcal/mol (5906.2668 without restraints) Performing minimization step: 1974. Total energy = 5910.1600 kcal/mol (5903.7864 without restraints) Performing minimization step: 1975. Total energy = 5907.6787 kcal/mol (5901.3088 without restraints) Performing minimization step: 1976. Total energy = 5905.2005 kcal/mol (5898.8341 without restraints) Performing minimization step: 1977. Total energy = 5902.7249 kcal/mol (5896.3623 without restraints) Performing minimization step: 1978. Total energy = 5900.2522 kcal/mol (5893.8933 without restraints) Performing minimization step: 1979. Total energy = 5897.7825 kcal/mol (5891.4272 without restraints) Performing minimization step: 1980. Total energy = 5895.3163 kcal/mol (5888.9647 without restraints) Performing minimization step: 1981. Total energy = 5892.8519 kcal/mol (5886.5038 without restraints) Performing minimization step: 1982. Total energy = 5890.3904 kcal/mol (5884.0460 without restraints) Performing minimization step: 1983. Total energy = 5887.9320 kcal/mol (5881.5913 without restraints) Performing minimization step: 1984. Total energy = 5885.4762 kcal/mol (5879.1392 without restraints) Performing minimization step: 1985. Total energy = 5883.0235 kcal/mol (5876.6901 without restraints) Performing minimization step: 1986. Total energy = 5880.5741 kcal/mol (5874.2447 without restraints) Performing minimization step: 1987. Total energy = 5878.1270 kcal/mol (5871.8010 without restraints) Performing minimization step: 1988. Total energy = 5875.6825 kcal/mol (5869.3601 without restraints) Performing minimization step: 1989. Total energy = 5873.2411 kcal/mol (5866.9224 without restraints) Performing minimization step: 1990. Total energy = 5870.8019 kcal/mol (5864.4869 without restraints) Performing minimization step: 1991. Total energy = 5868.3659 kcal/mol (5862.0544 without restraints) Performing minimization step: 1992. Total energy = 5865.9327 kcal/mol (5859.6250 without restraints) Performing minimization step: 1993. Total energy = 5863.5023 kcal/mol (5857.1981 without restraints) Performing minimization step: 1994. Total energy = 5861.0747 kcal/mol (5854.7742 without restraints) Performing minimization step: 1995. Total energy = 5858.6500 kcal/mol (5852.3531 without restraints) Performing minimization step: 1996. Total energy = 5856.2285 kcal/mol (5849.9352 without restraints) Performing minimization step: 1997. Total energy = 5853.8090 kcal/mol (5847.5194 without restraints) Performing minimization step: 1998. Total energy = 5851.3928 kcal/mol (5845.1068 without restraints) Performing minimization step: 1999. Total energy = 5848.9790 kcal/mol (5842.6967 without restraints) Performing minimization step: 2000. Total energy = 5846.5679 kcal/mol (5840.2891 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 5844.1593 kcal/mol (5837.8840 without restraints) Performing minimization step: 2002. Total energy = 5841.7538 kcal/mol (5835.4823 without restraints) Performing minimization step: 2003. Total energy = 5839.3513 kcal/mol (5833.0834 without restraints) Performing minimization step: 2004. Total energy = 5836.9512 kcal/mol (5830.6869 without restraints) Performing minimization step: 2005. Total energy = 5834.5539 kcal/mol (5828.2933 without restraints) Performing minimization step: 2006. Total energy = 5832.1594 kcal/mol (5825.9023 without restraints) Performing minimization step: 2007. Total energy = 5829.7675 kcal/mol (5823.5142 without restraints) Performing minimization step: 2008. Total energy = 5827.3786 kcal/mol (5821.1287 without restraints) Performing minimization step: 2009. Total energy = 5824.9922 kcal/mol (5818.7461 without restraints) Performing minimization step: 2010. Total energy = 5822.6088 kcal/mol (5816.3664 without restraints) Performing minimization step: 2011. Total energy = 5820.2279 kcal/mol (5813.9889 without restraints) Performing minimization step: 2012. Total energy = 5817.8501 kcal/mol (5811.6148 without restraints) Performing minimization step: 2013. Total energy = 5815.4746 kcal/mol (5809.2429 without restraints) Performing minimization step: 2014. Total energy = 5813.1019 kcal/mol (5806.8738 without restraints) Performing minimization step: 2015. Total energy = 5810.7322 kcal/mol (5804.5077 without restraints) Performing minimization step: 2016. Total energy = 5808.3649 kcal/mol (5802.1440 without restraints) Performing minimization step: 2017. Total energy = 5806.0003 kcal/mol (5799.7830 without restraints) Performing minimization step: 2018. Total energy = 5803.6385 kcal/mol (5797.4248 without restraints) Performing minimization step: 2019. Total energy = 5801.2789 kcal/mol (5795.0689 without restraints) Performing minimization step: 2020. Total energy = 5798.9226 kcal/mol (5792.7162 without restraints) Performing minimization step: 2021. Total energy = 5796.5689 kcal/mol (5790.3660 without restraints) Performing minimization step: 2022. Total energy = 5794.2179 kcal/mol (5788.0186 without restraints) Performing minimization step: 2023. Total energy = 5791.8695 kcal/mol (5785.6736 without restraints) Performing minimization step: 2024. Total energy = 5789.5236 kcal/mol (5783.3315 without restraints) Performing minimization step: 2025. Total energy = 5787.1811 kcal/mol (5780.9925 without restraints) Performing minimization step: 2026. Total energy = 5784.8405 kcal/mol (5778.6555 without restraints) Performing minimization step: 2027. Total energy = 5782.5025 kcal/mol (5776.3211 without restraints) Performing minimization step: 2028. Total energy = 5780.1672 kcal/mol (5773.9895 without restraints) Performing minimization step: 2029. Total energy = 5777.8347 kcal/mol (5771.6605 without restraints) Performing minimization step: 2030. Total energy = 5775.5047 kcal/mol (5769.3340 without restraints) Performing minimization step: 2031. Total energy = 5773.1776 kcal/mol (5767.0108 without restraints) Performing minimization step: 2032. Total energy = 5770.8532 kcal/mol (5764.6898 without restraints) Performing minimization step: 2033. Total energy = 5768.5313 kcal/mol (5762.3715 without restraints) Performing minimization step: 2034. Total energy = 5766.2121 kcal/mol (5760.0559 without restraints) Performing minimization step: 2035. Total energy = 5763.8961 kcal/mol (5757.7435 without restraints) Performing minimization step: 2036. Total energy = 5761.5823 kcal/mol (5755.4332 without restraints) Performing minimization step: 2037. Total energy = 5759.2708 kcal/mol (5753.1251 without restraints) Performing minimization step: 2038. Total energy = 5756.9627 kcal/mol (5750.8207 without restraints) Performing minimization step: 2039. Total energy = 5754.6567 kcal/mol (5748.5182 without restraints) Performing minimization step: 2040. Total energy = 5752.3528 kcal/mol (5746.2180 without restraints) Performing minimization step: 2041. Total energy = 5750.0523 kcal/mol (5743.9211 without restraints) Performing minimization step: 2042. Total energy = 5747.7539 kcal/mol (5741.6262 without restraints) Performing minimization step: 2043. Total energy = 5745.4579 kcal/mol (5739.3337 without restraints) Performing minimization step: 2044. Total energy = 5743.1649 kcal/mol (5737.0443 without restraints) Performing minimization step: 2045. Total energy = 5740.8744 kcal/mol (5734.7573 without restraints) Performing minimization step: 2046. Total energy = 5738.5867 kcal/mol (5732.4732 without restraints) Performing minimization step: 2047. Total energy = 5736.3011 kcal/mol (5730.1911 without restraints) Performing minimization step: 2048. Total energy = 5734.0184 kcal/mol (5727.9120 without restraints) Performing minimization step: 2049. Total energy = 5731.7386 kcal/mol (5725.6358 without restraints) Performing minimization step: 2050. Total energy = 5729.4609 kcal/mol (5723.3616 without restraints) Performing minimization step: 2051. Total energy = 5727.1861 kcal/mol (5721.0905 without restraints) Performing minimization step: 2052. Total energy = 5724.9143 kcal/mol (5718.8220 without restraints) Performing minimization step: 2053. Total energy = 5722.6441 kcal/mol (5716.5554 without restraints) Performing minimization step: 2054. Total energy = 5720.3762 kcal/mol (5714.2911 without restraints) Performing minimization step: 2055. Total energy = 5718.1115 kcal/mol (5712.0300 without restraints) Performing minimization step: 2056. Total energy = 5715.8490 kcal/mol (5709.7709 without restraints) Performing minimization step: 2057. Total energy = 5713.5889 kcal/mol (5707.5145 without restraints) Performing minimization step: 2058. Total energy = 5711.3320 kcal/mol (5705.2610 without restraints) Performing minimization step: 2059. Total energy = 5709.0780 kcal/mol (5703.0106 without restraints) Performing minimization step: 2060. Total energy = 5706.8258 kcal/mol (5700.7619 without restraints) Performing minimization step: 2061. Total energy = 5704.5764 kcal/mol (5698.5160 without restraints) Performing minimization step: 2062. Total energy = 5702.3298 kcal/mol (5696.2730 without restraints) Performing minimization step: 2063. Total energy = 5700.0853 kcal/mol (5694.0320 without restraints) Performing minimization step: 2064. Total energy = 5697.8436 kcal/mol (5691.7940 without restraints) Performing minimization step: 2065. Total energy = 5695.6041 kcal/mol (5689.5579 without restraints) Performing minimization step: 2066. Total energy = 5693.3672 kcal/mol (5687.3245 without restraints) Performing minimization step: 2067. Total energy = 5691.1331 kcal/mol (5685.0939 without restraints) Performing minimization step: 2068. Total energy = 5688.9016 kcal/mol (5682.8660 without restraints) Performing minimization step: 2069. Total energy = 5686.6723 kcal/mol (5680.6402 without restraints) Performing minimization step: 2070. Total energy = 5684.4449 kcal/mol (5678.4163 without restraints) Performing minimization step: 2071. Total energy = 5682.2205 kcal/mol (5676.1953 without restraints) Performing minimization step: 2072. Total energy = 5679.9986 kcal/mol (5673.9771 without restraints) Performing minimization step: 2073. Total energy = 5677.7797 kcal/mol (5671.7617 without restraints) Performing minimization step: 2074. Total energy = 5675.5630 kcal/mol (5669.5484 without restraints) Performing minimization step: 2075. Total energy = 5673.3488 kcal/mol (5667.3378 without restraints) Performing minimization step: 2076. Total energy = 5671.1378 kcal/mol (5665.1303 without restraints) Performing minimization step: 2077. Total energy = 5668.9283 kcal/mol (5662.9242 without restraints) Performing minimization step: 2078. Total energy = 5666.7213 kcal/mol (5660.7208 without restraints) Performing minimization step: 2079. Total energy = 5664.5168 kcal/mol (5658.5198 without restraints) Performing minimization step: 2080. Total energy = 5662.3153 kcal/mol (5656.3218 without restraints) Performing minimization step: 2081. Total energy = 5660.1154 kcal/mol (5654.1254 without restraints) Performing minimization step: 2082. Total energy = 5657.9184 kcal/mol (5651.9319 without restraints) Performing minimization step: 2083. Total energy = 5655.7239 kcal/mol (5649.7409 without restraints) Performing minimization step: 2084. Total energy = 5653.5317 kcal/mol (5647.5521 without restraints) Performing minimization step: 2085. Total energy = 5651.3421 kcal/mol (5645.3661 without restraints) Performing minimization step: 2086. Total energy = 5649.1548 kcal/mol (5643.1823 without restraints) Performing minimization step: 2087. Total energy = 5646.9701 kcal/mol (5641.0010 without restraints) Performing minimization step: 2088. Total energy = 5644.7882 kcal/mol (5638.8226 without restraints) Performing minimization step: 2089. Total energy = 5642.6083 kcal/mol (5636.6463 without restraints) Performing minimization step: 2090. Total energy = 5640.4311 kcal/mol (5634.4726 without restraints) Performing minimization step: 2091. Total energy = 5638.2560 kcal/mol (5632.3009 without restraints) Performing minimization step: 2092. Total energy = 5636.0840 kcal/mol (5630.1324 without restraints) Performing minimization step: 2093. Total energy = 5633.9136 kcal/mol (5627.9654 without restraints) Performing minimization step: 2094. Total energy = 5631.7458 kcal/mol (5625.8012 without restraints) Performing minimization step: 2095. Total energy = 5629.5807 kcal/mol (5623.6396 without restraints) Performing minimization step: 2096. Total energy = 5627.4181 kcal/mol (5621.4805 without restraints) Performing minimization step: 2097. Total energy = 5625.2578 kcal/mol (5619.3236 without restraints) Performing minimization step: 2098. Total energy = 5623.1000 kcal/mol (5617.1692 without restraints) Performing minimization step: 2099. Total energy = 5620.9443 kcal/mol (5615.0171 without restraints) Performing minimization step: 2100. Total energy = 5618.7922 kcal/mol (5612.8684 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 5616.6411 kcal/mol (5610.7208 without restraints) Performing minimization step: 2102. Total energy = 5614.4929 kcal/mol (5608.5761 without restraints) Performing minimization step: 2103. Total energy = 5612.3473 kcal/mol (5606.4340 without restraints) Performing minimization step: 2104. Total energy = 5610.2035 kcal/mol (5604.2936 without restraints) Performing minimization step: 2105. Total energy = 5608.0622 kcal/mol (5602.1558 without restraints) Performing minimization step: 2106. Total energy = 5605.9234 kcal/mol (5600.0203 without restraints) Performing minimization step: 2107. Total energy = 5603.7866 kcal/mol (5597.8871 without restraints) Performing minimization step: 2108. Total energy = 5601.6527 kcal/mol (5595.7566 without restraints) Performing minimization step: 2109. Total energy = 5599.5210 kcal/mol (5593.6284 without restraints) Performing minimization step: 2110. Total energy = 5597.3918 kcal/mol (5591.5027 without restraints) Performing minimization step: 2111. Total energy = 5595.2648 kcal/mol (5589.3790 without restraints) Performing minimization step: 2112. Total energy = 5593.1401 kcal/mol (5587.2578 without restraints) Performing minimization step: 2113. Total energy = 5591.0177 kcal/mol (5585.1389 without restraints) Performing minimization step: 2114. Total energy = 5588.8978 kcal/mol (5583.0224 without restraints) Performing minimization step: 2115. Total energy = 5586.7805 kcal/mol (5580.9086 without restraints) Performing minimization step: 2116. Total energy = 5584.6653 kcal/mol (5578.7968 without restraints) Performing minimization step: 2117. Total energy = 5582.5524 kcal/mol (5576.6874 without restraints) Performing minimization step: 2118. Total energy = 5580.4419 kcal/mol (5574.5803 without restraints) Performing minimization step: 2119. Total energy = 5578.3337 kcal/mol (5572.4756 without restraints) Performing minimization step: 2120. Total energy = 5576.2279 kcal/mol (5570.3732 without restraints) Performing minimization step: 2121. Total energy = 5574.1244 kcal/mol (5568.2731 without restraints) Performing minimization step: 2122. Total energy = 5572.0232 kcal/mol (5566.1754 without restraints) Performing minimization step: 2123. Total energy = 5569.9248 kcal/mol (5564.0804 without restraints) Performing minimization step: 2124. Total energy = 5567.8281 kcal/mol (5561.9872 without restraints) Performing minimization step: 2125. Total energy = 5565.7340 kcal/mol (5559.8965 without restraints) Performing minimization step: 2126. Total energy = 5563.6417 kcal/mol (5557.8075 without restraints) Performing minimization step: 2127. Total energy = 5561.5524 kcal/mol (5555.7217 without restraints) Performing minimization step: 2128. Total energy = 5559.4652 kcal/mol (5553.6379 without restraints) Performing minimization step: 2129. Total energy = 5557.3804 kcal/mol (5551.5566 without restraints) Performing minimization step: 2130. Total energy = 5555.2980 kcal/mol (5549.4778 without restraints) Performing minimization step: 2131. Total energy = 5553.2181 kcal/mol (5547.4012 without restraints) Performing minimization step: 2132. Total energy = 5551.1404 kcal/mol (5545.3269 without restraints) Performing minimization step: 2133. Total energy = 5549.0645 kcal/mol (5543.2543 without restraints) Performing minimization step: 2134. Total energy = 5546.9910 kcal/mol (5541.1843 without restraints) Performing minimization step: 2135. Total energy = 5544.9200 kcal/mol (5539.1170 without restraints) Performing minimization step: 2136. Total energy = 5542.8510 kcal/mol (5537.0511 without restraints) Performing minimization step: 2137. Total energy = 5540.7845 kcal/mol (5534.9880 without restraints) Performing minimization step: 2138. Total energy = 5538.7202 kcal/mol (5532.9271 without restraints) Performing minimization step: 2139. Total energy = 5536.6581 kcal/mol (5530.8685 without restraints) Performing minimization step: 2140. Total energy = 5534.5988 kcal/mol (5528.8126 without restraints) Performing minimization step: 2141. Total energy = 5532.5415 kcal/mol (5526.7587 without restraints) Performing minimization step: 2142. Total energy = 5530.4861 kcal/mol (5524.7067 without restraints) Performing minimization step: 2143. Total energy = 5528.4332 kcal/mol (5522.6572 without restraints) Performing minimization step: 2144. Total energy = 5526.3828 kcal/mol (5520.6101 without restraints) Performing minimization step: 2145. Total energy = 5524.3340 kcal/mol (5518.5646 without restraints) Performing minimization step: 2146. Total energy = 5522.2880 kcal/mol (5516.5222 without restraints) Performing minimization step: 2147. Total energy = 5520.2441 kcal/mol (5514.4816 without restraints) Performing minimization step: 2148. Total energy = 5518.2025 kcal/mol (5512.4434 without restraints) Performing minimization step: 2149. Total energy = 5516.1629 kcal/mol (5510.4073 without restraints) Performing minimization step: 2150. Total energy = 5514.1258 kcal/mol (5508.3735 without restraints) Performing minimization step: 2151. Total energy = 5512.0911 kcal/mol (5506.3422 without restraints) Performing minimization step: 2152. Total energy = 5510.0585 kcal/mol (5504.3130 without restraints) Performing minimization step: 2153. Total energy = 5508.0283 kcal/mol (5502.2862 without restraints) Performing minimization step: 2154. Total energy = 5506.0000 kcal/mol (5500.2613 without restraints) Performing minimization step: 2155. Total energy = 5503.9734 kcal/mol (5498.2380 without restraints) Performing minimization step: 2156. Total energy = 5501.9498 kcal/mol (5496.2181 without restraints) Performing minimization step: 2157. Total energy = 5499.9286 kcal/mol (5494.2001 without restraints) Performing minimization step: 2158. Total energy = 5497.9092 kcal/mol (5492.1840 without restraints) Performing minimization step: 2159. Total energy = 5495.8923 kcal/mol (5490.1705 without restraints) Performing minimization step: 2160. Total energy = 5493.8779 kcal/mol (5488.1595 without restraints) Performing minimization step: 2161. Total energy = 5491.8654 kcal/mol (5486.1504 without restraints) Performing minimization step: 2162. Total energy = 5489.8548 kcal/mol (5484.1431 without restraints) Performing minimization step: 2163. Total energy = 5487.8470 kcal/mol (5482.1387 without restraints) Performing minimization step: 2164. Total energy = 5485.8410 kcal/mol (5480.1361 without restraints) Performing minimization step: 2165. Total energy = 5483.8373 kcal/mol (5478.1357 without restraints) Performing minimization step: 2166. Total energy = 5481.8356 kcal/mol (5476.1374 without restraints) Performing minimization step: 2167. Total energy = 5479.8361 kcal/mol (5474.1413 without restraints) Performing minimization step: 2168. Total energy = 5477.8386 kcal/mol (5472.1470 without restraints) Performing minimization step: 2169. Total energy = 5475.8435 kcal/mol (5470.1554 without restraints) Performing minimization step: 2170. Total energy = 5473.8506 kcal/mol (5468.1658 without restraints) Performing minimization step: 2171. Total energy = 5471.8602 kcal/mol (5466.1789 without restraints) Performing minimization step: 2172. Total energy = 5469.8716 kcal/mol (5464.1936 without restraints) Performing minimization step: 2173. Total energy = 5467.8858 kcal/mol (5462.2111 without restraints) Performing minimization step: 2174. Total energy = 5465.9018 kcal/mol (5460.2303 without restraints) Performing minimization step: 2175. Total energy = 5463.9197 kcal/mol (5458.2517 without restraints) Performing minimization step: 2176. Total energy = 5461.9400 kcal/mol (5456.2753 without restraints) Performing minimization step: 2177. Total energy = 5459.9625 kcal/mol (5454.3012 without restraints) Performing minimization step: 2178. Total energy = 5457.9871 kcal/mol (5452.3290 without restraints) Performing minimization step: 2179. Total energy = 5456.0140 kcal/mol (5450.3595 without restraints) Performing minimization step: 2180. Total energy = 5454.0427 kcal/mol (5448.3914 without restraints) Performing minimization step: 2181. Total energy = 5452.0741 kcal/mol (5446.4262 without restraints) Performing minimization step: 2182. Total energy = 5450.1072 kcal/mol (5444.4626 without restraints) Performing minimization step: 2183. Total energy = 5448.1424 kcal/mol (5442.5011 without restraints) Performing minimization step: 2184. Total energy = 5446.1803 kcal/mol (5440.5423 without restraints) Performing minimization step: 2185. Total energy = 5444.2202 kcal/mol (5438.5856 without restraints) Performing minimization step: 2186. Total energy = 5442.2617 kcal/mol (5436.6308 without restraints) Performing minimization step: 2187. Total energy = 5440.3058 kcal/mol (5434.6778 without restraints) Performing minimization step: 2188. Total energy = 5438.3519 kcal/mol (5432.7272 without restraints) Performing minimization step: 2189. Total energy = 5436.4002 kcal/mol (5430.7789 without restraints) Performing minimization step: 2190. Total energy = 5434.4502 kcal/mol (5428.8323 without restraints) Performing minimization step: 2191. Total energy = 5432.5021 kcal/mol (5426.8874 without restraints) Performing minimization step: 2192. Total energy = 5430.5568 kcal/mol (5424.9455 without restraints) Performing minimization step: 2193. Total energy = 5428.6133 kcal/mol (5423.0053 without restraints) Performing minimization step: 2194. Total energy = 5426.6718 kcal/mol (5421.0670 without restraints) Performing minimization step: 2195. Total energy = 5424.7325 kcal/mol (5419.1311 without restraints) Performing minimization step: 2196. Total energy = 5422.7956 kcal/mol (5417.1975 without restraints) Performing minimization step: 2197. Total energy = 5420.8605 kcal/mol (5415.2658 without restraints) Performing minimization step: 2198. Total energy = 5418.9276 kcal/mol (5413.3361 without restraints) Performing minimization step: 2199. Total energy = 5416.9967 kcal/mol (5411.4086 without restraints) Performing minimization step: 2200. Total energy = 5415.0682 kcal/mol (5409.4834 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 5413.1414 kcal/mol (5407.5600 without restraints) Performing minimization step: 2202. Total energy = 5411.2171 kcal/mol (5405.6391 without restraints) Performing minimization step: 2203. Total energy = 5409.2952 kcal/mol (5403.7203 without restraints) Performing minimization step: 2204. Total energy = 5407.3747 kcal/mol (5401.8031 without restraints) Performing minimization step: 2205. Total energy = 5405.4566 kcal/mol (5399.8885 without restraints) Performing minimization step: 2206. Total energy = 5403.5407 kcal/mol (5397.9758 without restraints) Performing minimization step: 2207. Total energy = 5401.6266 kcal/mol (5396.0649 without restraints) Performing minimization step: 2208. Total energy = 5399.7150 kcal/mol (5394.1567 without restraints) Performing minimization step: 2209. Total energy = 5397.8051 kcal/mol (5392.2500 without restraints) Performing minimization step: 2210. Total energy = 5395.8975 kcal/mol (5390.3458 without restraints) Performing minimization step: 2211. Total energy = 5393.9915 kcal/mol (5388.4430 without restraints) Performing minimization step: 2212. Total energy = 5392.0877 kcal/mol (5386.5424 without restraints) Performing minimization step: 2213. Total energy = 5390.1863 kcal/mol (5384.6444 without restraints) Performing minimization step: 2214. Total energy = 5388.2868 kcal/mol (5382.7482 without restraints) Performing minimization step: 2215. Total energy = 5386.3892 kcal/mol (5380.8538 without restraints) Performing minimization step: 2216. Total energy = 5384.4940 kcal/mol (5378.9619 without restraints) Performing minimization step: 2217. Total energy = 5382.6003 kcal/mol (5377.0715 without restraints) Performing minimization step: 2218. Total energy = 5380.7089 kcal/mol (5375.1833 without restraints) Performing minimization step: 2219. Total energy = 5378.8193 kcal/mol (5373.2972 without restraints) Performing minimization step: 2220. Total energy = 5376.9325 kcal/mol (5371.4135 without restraints) Performing minimization step: 2221. Total energy = 5375.0471 kcal/mol (5369.5314 without restraints) Performing minimization step: 2222. Total energy = 5373.1641 kcal/mol (5367.6516 without restraints) Performing minimization step: 2223. Total energy = 5371.2834 kcal/mol (5365.7741 without restraints) Performing minimization step: 2224. Total energy = 5369.4046 kcal/mol (5363.8987 without restraints) Performing minimization step: 2225. Total energy = 5367.5278 kcal/mol (5362.0252 without restraints) Performing minimization step: 2226. Total energy = 5365.6529 kcal/mol (5360.1535 without restraints) Performing minimization step: 2227. Total energy = 5363.7799 kcal/mol (5358.2838 without restraints) Performing minimization step: 2228. Total energy = 5361.9087 kcal/mol (5356.4159 without restraints) Performing minimization step: 2229. Total energy = 5360.0396 kcal/mol (5354.5501 without restraints) Performing minimization step: 2230. Total energy = 5358.1728 kcal/mol (5352.6866 without restraints) Performing minimization step: 2231. Total energy = 5356.3077 kcal/mol (5350.8247 without restraints) Performing minimization step: 2232. Total energy = 5354.4447 kcal/mol (5348.9649 without restraints) Performing minimization step: 2233. Total energy = 5352.5841 kcal/mol (5347.1075 without restraints) Performing minimization step: 2234. Total energy = 5350.7253 kcal/mol (5345.2521 without restraints) Performing minimization step: 2235. Total energy = 5348.8684 kcal/mol (5343.3984 without restraints) Performing minimization step: 2236. Total energy = 5347.0133 kcal/mol (5341.5466 without restraints) Performing minimization step: 2237. Total energy = 5345.1609 kcal/mol (5339.6974 without restraints) Performing minimization step: 2238. Total energy = 5343.3094 kcal/mol (5337.8492 without restraints) Performing minimization step: 2239. Total energy = 5341.4605 kcal/mol (5336.0036 without restraints) Performing minimization step: 2240. Total energy = 5339.6136 kcal/mol (5334.1600 without restraints) Performing minimization step: 2241. Total energy = 5337.7684 kcal/mol (5332.3179 without restraints) Performing minimization step: 2242. Total energy = 5335.9248 kcal/mol (5330.4775 without restraints) Performing minimization step: 2243. Total energy = 5334.0837 kcal/mol (5328.6396 without restraints) Performing minimization step: 2244. Total energy = 5332.2445 kcal/mol (5326.8037 without restraints) Performing minimization step: 2245. Total energy = 5330.4077 kcal/mol (5324.9702 without restraints) Performing minimization step: 2246. Total energy = 5328.5728 kcal/mol (5323.1385 without restraints) Performing minimization step: 2247. Total energy = 5326.7397 kcal/mol (5321.3086 without restraints) Performing minimization step: 2248. Total energy = 5324.9082 kcal/mol (5319.4802 without restraints) Performing minimization step: 2249. Total energy = 5323.0788 kcal/mol (5317.6541 without restraints) Performing minimization step: 2250. Total energy = 5321.2514 kcal/mol (5315.8300 without restraints) Performing minimization step: 2251. Total energy = 5319.4262 kcal/mol (5314.0081 without restraints) Performing minimization step: 2252. Total energy = 5317.6032 kcal/mol (5312.1882 without restraints) Performing minimization step: 2253. Total energy = 5315.7815 kcal/mol (5310.3697 without restraints) Performing minimization step: 2254. Total energy = 5313.9619 kcal/mol (5308.5534 without restraints) Performing minimization step: 2255. Total energy = 5312.1444 kcal/mol (5306.7393 without restraints) Performing minimization step: 2256. Total energy = 5310.3287 kcal/mol (5304.9266 without restraints) Performing minimization step: 2257. Total energy = 5308.5149 kcal/mol (5303.1160 without restraints) Performing minimization step: 2258. Total energy = 5306.7031 kcal/mol (5301.3072 without restraints) Performing minimization step: 2259. Total energy = 5304.8935 kcal/mol (5299.5011 without restraints) Performing minimization step: 2260. Total energy = 5303.0857 kcal/mol (5297.6965 without restraints) Performing minimization step: 2261. Total energy = 5301.2797 kcal/mol (5295.8937 without restraints) Performing minimization step: 2262. Total energy = 5299.4761 kcal/mol (5294.0937 without restraints) Performing minimization step: 2263. Total energy = 5297.6748 kcal/mol (5292.2952 without restraints) Performing minimization step: 2264. Total energy = 5295.8747 kcal/mol (5290.4983 without restraints) Performing minimization step: 2265. Total energy = 5294.0765 kcal/mol (5288.7033 without restraints) Performing minimization step: 2266. Total energy = 5292.2803 kcal/mol (5286.9102 without restraints) Performing minimization step: 2267. Total energy = 5290.4862 kcal/mol (5285.1195 without restraints) Performing minimization step: 2268. Total energy = 5288.6936 kcal/mol (5283.3300 without restraints) Performing minimization step: 2269. Total energy = 5286.9030 kcal/mol (5281.5425 without restraints) Performing minimization step: 2270. Total energy = 5285.1145 kcal/mol (5279.7575 without restraints) Performing minimization step: 2271. Total energy = 5283.3276 kcal/mol (5277.9736 without restraints) Performing minimization step: 2272. Total energy = 5281.5429 kcal/mol (5276.1921 without restraints) Performing minimization step: 2273. Total energy = 5279.7600 kcal/mol (5274.4124 without restraints) Performing minimization step: 2274. Total energy = 5277.9791 kcal/mol (5272.6347 without restraints) Performing minimization step: 2275. Total energy = 5276.2003 kcal/mol (5270.8591 without restraints) Performing minimization step: 2276. Total energy = 5274.4236 kcal/mol (5269.0855 without restraints) Performing minimization step: 2277. Total energy = 5272.6483 kcal/mol (5267.3134 without restraints) Performing minimization step: 2278. Total energy = 5270.8752 kcal/mol (5265.5437 without restraints) Performing minimization step: 2279. Total energy = 5269.1040 kcal/mol (5263.7755 without restraints) Performing minimization step: 2280. Total energy = 5267.3341 kcal/mol (5262.0086 without restraints) Performing minimization step: 2281. Total energy = 5265.5663 kcal/mol (5260.2441 without restraints) Performing minimization step: 2282. Total energy = 5263.8007 kcal/mol (5258.4817 without restraints) Performing minimization step: 2283. Total energy = 5262.0368 kcal/mol (5256.7210 without restraints) Performing minimization step: 2284. Total energy = 5260.2752 kcal/mol (5254.9627 without restraints) Performing minimization step: 2285. Total energy = 5258.5153 kcal/mol (5253.2059 without restraints) Performing minimization step: 2286. Total energy = 5256.7571 kcal/mol (5251.4510 without restraints) Performing minimization step: 2287. Total energy = 5255.0010 kcal/mol (5249.6979 without restraints) Performing minimization step: 2288. Total energy = 5253.2465 kcal/mol (5247.9465 without restraints) Performing minimization step: 2289. Total energy = 5251.4938 kcal/mol (5246.1971 without restraints) Performing minimization step: 2290. Total energy = 5249.7430 kcal/mol (5244.4494 without restraints) Performing minimization step: 2291. Total energy = 5247.9944 kcal/mol (5242.7041 without restraints) Performing minimization step: 2292. Total energy = 5246.2474 kcal/mol (5240.9602 without restraints) Performing minimization step: 2293. Total energy = 5244.5022 kcal/mol (5239.2180 without restraints) Performing minimization step: 2294. Total energy = 5242.7586 kcal/mol (5237.4778 without restraints) Performing minimization step: 2295. Total energy = 5241.0175 kcal/mol (5235.7396 without restraints) Performing minimization step: 2296. Total energy = 5239.2778 kcal/mol (5234.0031 without restraints) Performing minimization step: 2297. Total energy = 5237.5403 kcal/mol (5232.2688 without restraints) Performing minimization step: 2298. Total energy = 5235.8045 kcal/mol (5230.5362 without restraints) Performing minimization step: 2299. Total energy = 5234.0702 kcal/mol (5228.8050 without restraints) Performing minimization step: 2300. Total energy = 5232.3382 kcal/mol (5227.0761 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 5230.6078 kcal/mol (5225.3489 without restraints) Performing minimization step: 2302. Total energy = 5228.8788 kcal/mol (5223.6231 without restraints) Performing minimization step: 2303. Total energy = 5227.1525 kcal/mol (5221.8999 without restraints) Performing minimization step: 2304. Total energy = 5225.4275 kcal/mol (5220.1780 without restraints) Performing minimization step: 2305. Total energy = 5223.7045 kcal/mol (5218.4581 without restraints) Performing minimization step: 2306. Total energy = 5221.9828 kcal/mol (5216.7394 without restraints) Performing minimization step: 2307. Total energy = 5220.2627 kcal/mol (5215.0226 without restraints) Performing minimization step: 2308. Total energy = 5218.5452 kcal/mol (5213.3084 without restraints) Performing minimization step: 2309. Total energy = 5216.8298 kcal/mol (5211.5960 without restraints) Performing minimization step: 2310. Total energy = 5215.1158 kcal/mol (5209.8852 without restraints) Performing minimization step: 2311. Total energy = 5213.4032 kcal/mol (5208.1756 without restraints) Performing minimization step: 2312. Total energy = 5211.6928 kcal/mol (5206.4684 without restraints) Performing minimization step: 2313. Total energy = 5209.9844 kcal/mol (5204.7631 without restraints) Performing minimization step: 2314. Total energy = 5208.2777 kcal/mol (5203.0595 without restraints) Performing minimization step: 2315. Total energy = 5206.5726 kcal/mol (5201.3574 without restraints) Performing minimization step: 2316. Total energy = 5204.8692 kcal/mol (5199.6573 without restraints) Performing minimization step: 2317. Total energy = 5203.1683 kcal/mol (5197.9595 without restraints) Performing minimization step: 2318. Total energy = 5201.4688 kcal/mol (5196.2632 without restraints) Performing minimization step: 2319. Total energy = 5199.7708 kcal/mol (5194.5683 without restraints) Performing minimization step: 2320. Total energy = 5198.0752 kcal/mol (5192.8758 without restraints) Performing minimization step: 2321. Total energy = 5196.3811 kcal/mol (5191.1847 without restraints) Performing minimization step: 2322. Total energy = 5194.6888 kcal/mol (5189.4956 without restraints) Performing minimization step: 2323. Total energy = 5192.9984 kcal/mol (5187.8083 without restraints) Performing minimization step: 2324. Total energy = 5191.3102 kcal/mol (5186.1232 without restraints) Performing minimization step: 2325. Total energy = 5189.6232 kcal/mol (5184.4392 without restraints) Performing minimization step: 2326. Total energy = 5187.9380 kcal/mol (5182.7573 without restraints) Performing minimization step: 2327. Total energy = 5186.2543 kcal/mol (5181.0765 without restraints) Performing minimization step: 2328. Total energy = 5184.5731 kcal/mol (5179.3985 without restraints) Performing minimization step: 2329. Total energy = 5182.8933 kcal/mol (5177.7219 without restraints) Performing minimization step: 2330. Total energy = 5181.2155 kcal/mol (5176.0472 without restraints) Performing minimization step: 2331. Total energy = 5179.5397 kcal/mol (5174.3746 without restraints) Performing minimization step: 2332. Total energy = 5177.8656 kcal/mol (5172.7035 without restraints) Performing minimization step: 2333. Total energy = 5176.1931 kcal/mol (5171.0341 without restraints) Performing minimization step: 2334. Total energy = 5174.5224 kcal/mol (5169.3666 without restraints) Performing minimization step: 2335. Total energy = 5172.8540 kcal/mol (5167.7011 without restraints) Performing minimization step: 2336. Total energy = 5171.1867 kcal/mol (5166.0369 without restraints) Performing minimization step: 2337. Total energy = 5169.5212 kcal/mol (5164.3745 without restraints) Performing minimization step: 2338. Total energy = 5167.8575 kcal/mol (5162.7139 without restraints) Performing minimization step: 2339. Total energy = 5166.1957 kcal/mol (5161.0552 without restraints) Performing minimization step: 2340. Total energy = 5164.5356 kcal/mol (5159.3982 without restraints) Performing minimization step: 2341. Total energy = 5162.8773 kcal/mol (5157.7429 without restraints) Performing minimization step: 2342. Total energy = 5161.2208 kcal/mol (5156.0895 without restraints) Performing minimization step: 2343. Total energy = 5159.5651 kcal/mol (5154.4369 without restraints) Performing minimization step: 2344. Total energy = 5157.9122 kcal/mol (5152.7870 without restraints) Performing minimization step: 2345. Total energy = 5156.2606 kcal/mol (5151.1383 without restraints) Performing minimization step: 2346. Total energy = 5154.6105 kcal/mol (5149.4914 without restraints) Performing minimization step: 2347. Total energy = 5152.9628 kcal/mol (5147.8469 without restraints) Performing minimization step: 2348. Total energy = 5151.3165 kcal/mol (5146.2037 without restraints) Performing minimization step: 2349. Total energy = 5149.6720 kcal/mol (5144.5622 without restraints) Performing minimization step: 2350. Total energy = 5148.0292 kcal/mol (5142.9224 without restraints) Performing minimization step: 2351. Total energy = 5146.3880 kcal/mol (5141.2844 without restraints) Performing minimization step: 2352. Total energy = 5144.7490 kcal/mol (5139.6484 without restraints) Performing minimization step: 2353. Total energy = 5143.1116 kcal/mol (5138.0141 without restraints) Performing minimization step: 2354. Total energy = 5141.4757 kcal/mol (5136.3812 without restraints) Performing minimization step: 2355. Total energy = 5139.8411 kcal/mol (5134.7498 without restraints) Performing minimization step: 2356. Total energy = 5138.2087 kcal/mol (5133.1204 without restraints) Performing minimization step: 2357. Total energy = 5136.5782 kcal/mol (5131.4929 without restraints) Performing minimization step: 2358. Total energy = 5134.9491 kcal/mol (5129.8669 without restraints) Performing minimization step: 2359. Total energy = 5133.3218 kcal/mol (5128.2427 without restraints) Performing minimization step: 2360. Total energy = 5131.6963 kcal/mol (5126.6202 without restraints) Performing minimization step: 2361. Total energy = 5130.0730 kcal/mol (5125.0000 without restraints) Performing minimization step: 2362. Total energy = 5128.4511 kcal/mol (5123.3810 without restraints) Performing minimization step: 2363. Total energy = 5126.8308 kcal/mol (5121.7639 without restraints) Performing minimization step: 2364. Total energy = 5125.2118 kcal/mol (5120.1478 without restraints) Performing minimization step: 2365. Total energy = 5123.5946 kcal/mol (5118.5338 without restraints) Performing minimization step: 2366. Total energy = 5121.9792 kcal/mol (5116.9214 without restraints) Performing minimization step: 2367. Total energy = 5120.3660 kcal/mol (5115.3113 without restraints) Performing minimization step: 2368. Total energy = 5118.7542 kcal/mol (5113.7024 without restraints) Performing minimization step: 2369. Total energy = 5117.1440 kcal/mol (5112.0953 without restraints) Performing minimization step: 2370. Total energy = 5115.5356 kcal/mol (5110.4899 without restraints) Performing minimization step: 2371. Total energy = 5113.9287 kcal/mol (5108.8861 without restraints) Performing minimization step: 2372. Total energy = 5112.3237 kcal/mol (5107.2841 without restraints) Performing minimization step: 2373. Total energy = 5110.7202 kcal/mol (5105.6838 without restraints) Performing minimization step: 2374. Total energy = 5109.1188 kcal/mol (5104.0853 without restraints) Performing minimization step: 2375. Total energy = 5107.5188 kcal/mol (5102.4883 without restraints) Performing minimization step: 2376. Total energy = 5105.9207 kcal/mol (5100.8932 without restraints) Performing minimization step: 2377. Total energy = 5104.3247 kcal/mol (5099.3003 without restraints) Performing minimization step: 2378. Total energy = 5102.7299 kcal/mol (5097.7085 without restraints) Performing minimization step: 2379. Total energy = 5101.1371 kcal/mol (5096.1187 without restraints) Performing minimization step: 2380. Total energy = 5099.5457 kcal/mol (5094.5303 without restraints) Performing minimization step: 2381. Total energy = 5097.9558 kcal/mol (5092.9435 without restraints) Performing minimization step: 2382. Total energy = 5096.3679 kcal/mol (5091.3589 without restraints) Performing minimization step: 2383. Total energy = 5094.7817 kcal/mol (5089.7754 without restraints) Performing minimization step: 2384. Total energy = 5093.1966 kcal/mol (5088.1935 without restraints) Performing minimization step: 2385. Total energy = 5091.6136 kcal/mol (5086.6133 without restraints) Performing minimization step: 2386. Total energy = 5090.0323 kcal/mol (5085.0350 without restraints) Performing minimization step: 2387. Total energy = 5088.4524 kcal/mol (5083.4581 without restraints) Performing minimization step: 2388. Total energy = 5086.8743 kcal/mol (5081.8832 without restraints) Performing minimization step: 2389. Total energy = 5085.2980 kcal/mol (5080.3099 without restraints) Performing minimization step: 2390. Total energy = 5083.7235 kcal/mol (5078.7383 without restraints) Performing minimization step: 2391. Total energy = 5082.1501 kcal/mol (5077.1680 without restraints) Performing minimization step: 2392. Total energy = 5080.5787 kcal/mol (5075.5996 without restraints) Performing minimization step: 2393. Total energy = 5079.0093 kcal/mol (5074.0331 without restraints) Performing minimization step: 2394. Total energy = 5077.4409 kcal/mol (5072.4677 without restraints) Performing minimization step: 2395. Total energy = 5075.8741 kcal/mol (5070.9040 without restraints) Performing minimization step: 2396. Total energy = 5074.3100 kcal/mol (5069.3430 without restraints) Performing minimization step: 2397. Total energy = 5072.7466 kcal/mol (5067.7824 without restraints) Performing minimization step: 2398. Total energy = 5071.1849 kcal/mol (5066.2237 without restraints) Performing minimization step: 2399. Total energy = 5069.6252 kcal/mol (5064.6671 without restraints) Performing minimization step: 2400. Total energy = 5068.0672 kcal/mol (5063.1121 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 5066.5108 kcal/mol (5061.5586 without restraints) Performing minimization step: 2402. Total energy = 5064.9564 kcal/mol (5060.0071 without restraints) Performing minimization step: 2403. Total energy = 5063.4029 kcal/mol (5058.4566 without restraints) Performing minimization step: 2404. Total energy = 5061.8510 kcal/mol (5056.9078 without restraints) Performing minimization step: 2405. Total energy = 5060.3016 kcal/mol (5055.3614 without restraints) Performing minimization step: 2406. Total energy = 5058.7531 kcal/mol (5053.8157 without restraints) Performing minimization step: 2407. Total energy = 5057.2050 kcal/mol (5052.2706 without restraints) Performing minimization step: 2408. Total energy = 5055.6594 kcal/mol (5050.7281 without restraints) Performing minimization step: 2409. Total energy = 5054.1162 kcal/mol (5049.1878 without restraints) Performing minimization step: 2410. Total energy = 5052.5744 kcal/mol (5047.6492 without restraints) Performing minimization step: 2411. Total energy = 5051.0342 kcal/mol (5046.1119 without restraints) Performing minimization step: 2412. Total energy = 5049.4953 kcal/mol (5044.5758 without restraints) Performing minimization step: 2413. Total energy = 5047.9581 kcal/mol (5043.0416 without restraints) Performing minimization step: 2414. Total energy = 5046.4224 kcal/mol (5041.5088 without restraints) Performing minimization step: 2415. Total energy = 5044.8883 kcal/mol (5039.9778 without restraints) Performing minimization step: 2416. Total energy = 5043.3558 kcal/mol (5038.4483 without restraints) Performing minimization step: 2417. Total energy = 5041.8251 kcal/mol (5036.9205 without restraints) Performing minimization step: 2418. Total energy = 5040.2962 kcal/mol (5035.3946 without restraints) Performing minimization step: 2419. Total energy = 5038.7684 kcal/mol (5033.8697 without restraints) Performing minimization step: 2420. Total energy = 5037.2423 kcal/mol (5032.3467 without restraints) Performing minimization step: 2421. Total energy = 5035.7180 kcal/mol (5030.8253 without restraints) Performing minimization step: 2422. Total energy = 5034.1953 kcal/mol (5029.3055 without restraints) Performing minimization step: 2423. Total energy = 5032.6744 kcal/mol (5027.7875 without restraints) Performing minimization step: 2424. Total energy = 5031.1548 kcal/mol (5026.2709 without restraints) Performing minimization step: 2425. Total energy = 5029.6367 kcal/mol (5024.7559 without restraints) Performing minimization step: 2426. Total energy = 5028.1207 kcal/mol (5023.2427 without restraints) Performing minimization step: 2427. Total energy = 5026.6056 kcal/mol (5021.7305 without restraints) Performing minimization step: 2428. Total energy = 5025.0917 kcal/mol (5020.2196 without restraints) Performing minimization step: 2429. Total energy = 5023.5801 kcal/mol (5018.7109 without restraints) Performing minimization step: 2430. Total energy = 5022.0698 kcal/mol (5017.2036 without restraints) Performing minimization step: 2431. Total energy = 5020.5615 kcal/mol (5015.6983 without restraints) Performing minimization step: 2432. Total energy = 5019.0548 kcal/mol (5014.1945 without restraints) Performing minimization step: 2433. Total energy = 5017.5497 kcal/mol (5012.6924 without restraints) Performing minimization step: 2434. Total energy = 5016.0460 kcal/mol (5011.1916 without restraints) Performing minimization step: 2435. Total energy = 5014.5448 kcal/mol (5009.6935 without restraints) Performing minimization step: 2436. Total energy = 5013.0445 kcal/mol (5008.1961 without restraints) Performing minimization step: 2437. Total energy = 5011.5461 kcal/mol (5006.7007 without restraints) Performing minimization step: 2438. Total energy = 5010.0489 kcal/mol (5005.2062 without restraints) Performing minimization step: 2439. Total energy = 5008.5531 kcal/mol (5003.7133 without restraints) Performing minimization step: 2440. Total energy = 5007.0589 kcal/mol (5002.2221 without restraints) Performing minimization step: 2441. Total energy = 5005.5663 kcal/mol (5000.7324 without restraints) Performing minimization step: 2442. Total energy = 5004.0747 kcal/mol (4999.2437 without restraints) Performing minimization step: 2443. Total energy = 5002.5855 kcal/mol (4997.7576 without restraints) Performing minimization step: 2444. Total energy = 5001.0976 kcal/mol (4996.2725 without restraints) Performing minimization step: 2445. Total energy = 4999.6114 kcal/mol (4994.7892 without restraints) Performing minimization step: 2446. Total energy = 4998.1265 kcal/mol (4993.3072 without restraints) Performing minimization step: 2447. Total energy = 4996.6432 kcal/mol (4991.8269 without restraints) Performing minimization step: 2448. Total energy = 4995.1612 kcal/mol (4990.3478 without restraints) Performing minimization step: 2449. Total energy = 4993.6812 kcal/mol (4988.8707 without restraints) Performing minimization step: 2450. Total energy = 4992.2026 kcal/mol (4987.3951 without restraints) Performing minimization step: 2451. Total energy = 4990.7261 kcal/mol (4985.9214 without restraints) Performing minimization step: 2452. Total energy = 4989.2506 kcal/mol (4984.4488 without restraints) Performing minimization step: 2453. Total energy = 4987.7767 kcal/mol (4982.9779 without restraints) Performing minimization step: 2454. Total energy = 4986.3044 kcal/mol (4981.5084 without restraints) Performing minimization step: 2455. Total energy = 4984.8338 kcal/mol (4980.0408 without restraints) Performing minimization step: 2456. Total energy = 4983.3647 kcal/mol (4978.5748 without restraints) Performing minimization step: 2457. Total energy = 4981.8976 kcal/mol (4977.1105 without restraints) Performing minimization step: 2458. Total energy = 4980.4315 kcal/mol (4975.6472 without restraints) Performing minimization step: 2459. Total energy = 4978.9670 kcal/mol (4974.1855 without restraints) Performing minimization step: 2460. Total energy = 4977.5040 kcal/mol (4972.7254 without restraints) Performing minimization step: 2461. Total energy = 4976.0425 kcal/mol (4971.2669 without restraints) Performing minimization step: 2462. Total energy = 4974.5825 kcal/mol (4969.8099 without restraints) Performing minimization step: 2463. Total energy = 4973.1242 kcal/mol (4968.3544 without restraints) Performing minimization step: 2464. Total energy = 4971.6676 kcal/mol (4966.9007 without restraints) Performing minimization step: 2465. Total energy = 4970.2121 kcal/mol (4965.4480 without restraints) Performing minimization step: 2466. Total energy = 4968.7582 kcal/mol (4963.9971 without restraints) Performing minimization step: 2467. Total energy = 4967.3060 kcal/mol (4962.5478 without restraints) Performing minimization step: 2468. Total energy = 4965.8549 kcal/mol (4961.0995 without restraints) Performing minimization step: 2469. Total energy = 4964.4056 kcal/mol (4959.6531 without restraints) Performing minimization step: 2470. Total energy = 4962.9575 kcal/mol (4958.2079 without restraints) Performing minimization step: 2471. Total energy = 4961.5113 kcal/mol (4956.7646 without restraints) Performing minimization step: 2472. Total energy = 4960.0665 kcal/mol (4955.3226 without restraints) Performing minimization step: 2473. Total energy = 4958.6230 kcal/mol (4953.8821 without restraints) Performing minimization step: 2474. Total energy = 4957.1815 kcal/mol (4952.4434 without restraints) Performing minimization step: 2475. Total energy = 4955.7414 kcal/mol (4951.0062 without restraints) Performing minimization step: 2476. Total energy = 4954.3032 kcal/mol (4949.5709 without restraints) Performing minimization step: 2477. Total energy = 4952.8658 kcal/mol (4948.1363 without restraints) Performing minimization step: 2478. Total energy = 4951.4303 kcal/mol (4946.7037 without restraints) Performing minimization step: 2479. Total energy = 4949.9960 kcal/mol (4945.2723 without restraints) Performing minimization step: 2480. Total energy = 4948.5632 kcal/mol (4943.8424 without restraints) Performing minimization step: 2481. Total energy = 4947.1317 kcal/mol (4942.4137 without restraints) Performing minimization step: 2482. Total energy = 4945.7020 kcal/mol (4940.9869 without restraints) Performing minimization step: 2483. Total energy = 4944.2737 kcal/mol (4939.5615 without restraints) Performing minimization step: 2484. Total energy = 4942.8472 kcal/mol (4938.1378 without restraints) Performing minimization step: 2485. Total energy = 4941.4223 kcal/mol (4936.7157 without restraints) Performing minimization step: 2486. Total energy = 4939.9988 kcal/mol (4935.2951 without restraints) Performing minimization step: 2487. Total energy = 4938.5770 kcal/mol (4933.8762 without restraints) Performing minimization step: 2488. Total energy = 4937.1561 kcal/mol (4932.4582 without restraints) Performing minimization step: 2489. Total energy = 4935.7366 kcal/mol (4931.0415 without restraints) Performing minimization step: 2490. Total energy = 4934.3187 kcal/mol (4929.6265 without restraints) Performing minimization step: 2491. Total energy = 4932.9024 kcal/mol (4928.2130 without restraints) Performing minimization step: 2492. Total energy = 4931.4877 kcal/mol (4926.8012 without restraints) Performing minimization step: 2493. Total energy = 4930.0747 kcal/mol (4925.3912 without restraints) Performing minimization step: 2494. Total energy = 4928.6628 kcal/mol (4923.9820 without restraints) Performing minimization step: 2495. Total energy = 4927.2528 kcal/mol (4922.5749 without restraints) Performing minimization step: 2496. Total energy = 4925.8439 kcal/mol (4921.1687 without restraints) Performing minimization step: 2497. Total energy = 4924.4367 kcal/mol (4919.7644 without restraints) Performing minimization step: 2498. Total energy = 4923.0306 kcal/mol (4918.3612 without restraints) Performing minimization step: 2499. Total energy = 4921.6260 kcal/mol (4916.9594 without restraints) Performing minimization step: 2500. Total energy = 4920.2233 kcal/mol (4915.5595 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 4918.8216 kcal/mol (4914.1606 without restraints) Performing minimization step: 2502. Total energy = 4917.4213 kcal/mol (4912.7630 without restraints) Performing minimization step: 2503. Total energy = 4916.0224 kcal/mol (4911.3673 without restraints) Performing minimization step: 2504. Total energy = 4914.6252 kcal/mol (4909.9728 without restraints) Performing minimization step: 2505. Total energy = 4913.2295 kcal/mol (4908.5800 without restraints) Performing minimization step: 2506. Total energy = 4911.8354 kcal/mol (4907.1886 without restraints) Performing minimization step: 2507. Total energy = 4910.4430 kcal/mol (4905.7992 without restraints) Performing minimization step: 2508. Total energy = 4909.0513 kcal/mol (4904.4101 without restraints) Performing minimization step: 2509. Total energy = 4907.6618 kcal/mol (4903.0235 without restraints) Performing minimization step: 2510. Total energy = 4906.2733 kcal/mol (4901.6379 without restraints) Performing minimization step: 2511. Total energy = 4904.8863 kcal/mol (4900.2537 without restraints) Performing minimization step: 2512. Total energy = 4903.5004 kcal/mol (4898.8706 without restraints) Performing minimization step: 2513. Total energy = 4902.1162 kcal/mol (4897.4893 without restraints) Performing minimization step: 2514. Total energy = 4900.7336 kcal/mol (4896.1094 without restraints) Performing minimization step: 2515. Total energy = 4899.3528 kcal/mol (4894.7319 without restraints) Performing minimization step: 2516. Total energy = 4897.9739 kcal/mol (4893.3555 without restraints) Performing minimization step: 2517. Total energy = 4896.5958 kcal/mol (4891.9801 without restraints) Performing minimization step: 2518. Total energy = 4895.2189 kcal/mol (4890.6060 without restraints) Performing minimization step: 2519. Total energy = 4893.8432 kcal/mol (4889.2331 without restraints) Performing minimization step: 2520. Total energy = 4892.4695 kcal/mol (4887.8622 without restraints) Performing minimization step: 2521. Total energy = 4891.0973 kcal/mol (4886.4929 without restraints) Performing minimization step: 2522. Total energy = 4889.7261 kcal/mol (4885.1244 without restraints) Performing minimization step: 2523. Total energy = 4888.3565 kcal/mol (4883.7577 without restraints) Performing minimization step: 2524. Total energy = 4886.9883 kcal/mol (4882.3922 without restraints) Performing minimization step: 2525. Total energy = 4885.6213 kcal/mol (4881.0280 without restraints) Performing minimization step: 2526. Total energy = 4884.2558 kcal/mol (4879.6653 without restraints) Performing minimization step: 2527. Total energy = 4882.8916 kcal/mol (4878.3039 without restraints) Performing minimization step: 2528. Total energy = 4881.5289 kcal/mol (4876.9441 without restraints) Performing minimization step: 2529. Total energy = 4880.1676 kcal/mol (4875.5854 without restraints) Performing minimization step: 2530. Total energy = 4878.8076 kcal/mol (4874.2283 without restraints) Performing minimization step: 2531. Total energy = 4877.4490 kcal/mol (4872.8726 without restraints) Performing minimization step: 2532. Total energy = 4876.0923 kcal/mol (4871.5186 without restraints) Performing minimization step: 2533. Total energy = 4874.7375 kcal/mol (4870.1666 without restraints) Performing minimization step: 2534. Total energy = 4873.3837 kcal/mol (4868.8157 without restraints) Performing minimization step: 2535. Total energy = 4872.0311 kcal/mol (4867.4658 without restraints) Performing minimization step: 2536. Total energy = 4870.6791 kcal/mol (4866.1165 without restraints) Performing minimization step: 2537. Total energy = 4869.3294 kcal/mol (4864.7697 without restraints) Performing minimization step: 2538. Total energy = 4867.9812 kcal/mol (4863.4243 without restraints) Performing minimization step: 2539. Total energy = 4866.6344 kcal/mol (4862.0803 without restraints) Performing minimization step: 2540. Total energy = 4865.2888 kcal/mol (4860.7374 without restraints) Performing minimization step: 2541. Total energy = 4863.9446 kcal/mol (4859.3961 without restraints) Performing minimization step: 2542. Total energy = 4862.6021 kcal/mol (4858.0563 without restraints) Performing minimization step: 2543. Total energy = 4861.2604 kcal/mol (4856.7174 without restraints) Performing minimization step: 2544. Total energy = 4859.9207 kcal/mol (4855.3805 without restraints) Performing minimization step: 2545. Total energy = 4858.5826 kcal/mol (4854.0452 without restraints) Performing minimization step: 2546. Total energy = 4857.2456 kcal/mol (4852.7110 without restraints) Performing minimization step: 2547. Total energy = 4855.9098 kcal/mol (4851.3777 without restraints) Performing minimization step: 2548. Total energy = 4854.5758 kcal/mol (4850.0467 without restraints) Performing minimization step: 2549. Total energy = 4853.2429 kcal/mol (4848.7165 without restraints) Performing minimization step: 2550. Total energy = 4851.9115 kcal/mol (4847.3879 without restraints) Performing minimization step: 2551. Total energy = 4850.5810 kcal/mol (4846.0601 without restraints) Performing minimization step: 2552. Total energy = 4849.2520 kcal/mol (4844.7338 without restraints) Performing minimization step: 2553. Total energy = 4847.9248 kcal/mol (4843.4095 without restraints) Performing minimization step: 2554. Total energy = 4846.5987 kcal/mol (4842.0861 without restraints) Performing minimization step: 2555. Total energy = 4845.2743 kcal/mol (4840.7644 without restraints) Performing minimization step: 2556. Total energy = 4843.9512 kcal/mol (4839.4441 without restraints) Performing minimization step: 2557. Total energy = 4842.6291 kcal/mol (4838.1248 without restraints) Performing minimization step: 2558. Total energy = 4841.3089 kcal/mol (4836.8073 without restraints) Performing minimization step: 2559. Total energy = 4839.9895 kcal/mol (4835.4907 without restraints) Performing minimization step: 2560. Total energy = 4838.6719 kcal/mol (4834.1758 without restraints) Performing minimization step: 2561. Total energy = 4837.3557 kcal/mol (4832.8625 without restraints) Performing minimization step: 2562. Total energy = 4836.0407 kcal/mol (4831.5501 without restraints) Performing minimization step: 2563. Total energy = 4834.7271 kcal/mol (4830.2393 without restraints) Performing minimization step: 2564. Total energy = 4833.4150 kcal/mol (4828.9299 without restraints) Performing minimization step: 2565. Total energy = 4832.1044 kcal/mol (4827.6221 without restraints) Performing minimization step: 2566. Total energy = 4830.7949 kcal/mol (4826.3153 without restraints) Performing minimization step: 2567. Total energy = 4829.4872 kcal/mol (4825.0105 without restraints) Performing minimization step: 2568. Total energy = 4828.1808 kcal/mol (4823.7068 without restraints) Performing minimization step: 2569. Total energy = 4826.8759 kcal/mol (4822.4045 without restraints) Performing minimization step: 2570. Total energy = 4825.5714 kcal/mol (4821.1028 without restraints) Performing minimization step: 2571. Total energy = 4824.2690 kcal/mol (4819.8033 without restraints) Performing minimization step: 2572. Total energy = 4822.9676 kcal/mol (4818.5044 without restraints) Performing minimization step: 2573. Total energy = 4821.6677 kcal/mol (4817.2075 without restraints) Performing minimization step: 2574. Total energy = 4820.3695 kcal/mol (4815.9118 without restraints) Performing minimization step: 2575. Total energy = 4819.0723 kcal/mol (4814.6175 without restraints) Performing minimization step: 2576. Total energy = 4817.7767 kcal/mol (4813.3245 without restraints) Performing minimization step: 2577. Total energy = 4816.4822 kcal/mol (4812.0327 without restraints) Performing minimization step: 2578. Total energy = 4815.1886 kcal/mol (4810.7420 without restraints) Performing minimization step: 2579. Total energy = 4813.8965 kcal/mol (4809.4524 without restraints) Performing minimization step: 2580. Total energy = 4812.6062 kcal/mol (4808.1649 without restraints) Performing minimization step: 2581. Total energy = 4811.3171 kcal/mol (4806.8786 without restraints) Performing minimization step: 2582. Total energy = 4810.0299 kcal/mol (4805.5941 without restraints) Performing minimization step: 2583. Total energy = 4808.7436 kcal/mol (4804.3105 without restraints) Performing minimization step: 2584. Total energy = 4807.4582 kcal/mol (4803.0278 without restraints) Performing minimization step: 2585. Total energy = 4806.1742 kcal/mol (4801.7464 without restraints) Performing minimization step: 2586. Total energy = 4804.8917 kcal/mol (4800.4668 without restraints) Performing minimization step: 2587. Total energy = 4803.6105 kcal/mol (4799.1881 without restraints) Performing minimization step: 2588. Total energy = 4802.3308 kcal/mol (4797.9112 without restraints) Performing minimization step: 2589. Total energy = 4801.0521 kcal/mol (4796.6352 without restraints) Performing minimization step: 2590. Total energy = 4799.7749 kcal/mol (4795.3607 without restraints) Performing minimization step: 2591. Total energy = 4798.4989 kcal/mol (4794.0874 without restraints) Performing minimization step: 2592. Total energy = 4797.2244 kcal/mol (4792.8155 without restraints) Performing minimization step: 2593. Total energy = 4795.9510 kcal/mol (4791.5449 without restraints) Performing minimization step: 2594. Total energy = 4794.6795 kcal/mol (4790.2763 without restraints) Performing minimization step: 2595. Total energy = 4793.4092 kcal/mol (4789.0087 without restraints) Performing minimization step: 2596. Total energy = 4792.1403 kcal/mol (4787.7424 without restraints) Performing minimization step: 2597. Total energy = 4790.8725 kcal/mol (4786.4773 without restraints) Performing minimization step: 2598. Total energy = 4789.6063 kcal/mol (4785.2137 without restraints) Performing minimization step: 2599. Total energy = 4788.3410 kcal/mol (4783.9512 without restraints) Performing minimization step: 2600. Total energy = 4787.0769 kcal/mol (4782.6898 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 4785.8144 kcal/mol (4781.4299 without restraints) Performing minimization step: 2602. Total energy = 4784.5532 kcal/mol (4780.1715 without restraints) Performing minimization step: 2603. Total energy = 4783.2933 kcal/mol (4778.9143 without restraints) Performing minimization step: 2604. Total energy = 4782.0347 kcal/mol (4777.6583 without restraints) Performing minimization step: 2605. Total energy = 4780.7775 kcal/mol (4776.4038 without restraints) Performing minimization step: 2606. Total energy = 4779.5216 kcal/mol (4775.1506 without restraints) Performing minimization step: 2607. Total energy = 4778.2670 kcal/mol (4773.8986 without restraints) Performing minimization step: 2608. Total energy = 4777.0135 kcal/mol (4772.6478 without restraints) Performing minimization step: 2609. Total energy = 4775.7616 kcal/mol (4771.3986 without restraints) Performing minimization step: 2610. Total energy = 4774.5111 kcal/mol (4770.1508 without restraints) Performing minimization step: 2611. Total energy = 4773.2611 kcal/mol (4768.9035 without restraints) Performing minimization step: 2612. Total energy = 4772.0128 kcal/mol (4767.6578 without restraints) Performing minimization step: 2613. Total energy = 4770.7662 kcal/mol (4766.4138 without restraints) Performing minimization step: 2614. Total energy = 4769.5207 kcal/mol (4765.1712 without restraints) Performing minimization step: 2615. Total energy = 4768.2768 kcal/mol (4763.9298 without restraints) Performing minimization step: 2616. Total energy = 4767.0342 kcal/mol (4762.6899 without restraints) Performing minimization step: 2617. Total energy = 4765.7925 kcal/mol (4761.4510 without restraints) Performing minimization step: 2618. Total energy = 4764.5525 kcal/mol (4760.2134 without restraints) Performing minimization step: 2619. Total energy = 4763.3134 kcal/mol (4758.9770 without restraints) Performing minimization step: 2620. Total energy = 4762.0754 kcal/mol (4757.7418 without restraints) Performing minimization step: 2621. Total energy = 4760.8389 kcal/mol (4756.5079 without restraints) Performing minimization step: 2622. Total energy = 4759.6033 kcal/mol (4755.2750 without restraints) Performing minimization step: 2623. Total energy = 4758.3693 kcal/mol (4754.0436 without restraints) Performing minimization step: 2624. Total energy = 4757.1364 kcal/mol (4752.8134 without restraints) Performing minimization step: 2625. Total energy = 4755.9051 kcal/mol (4751.5848 without restraints) Performing minimization step: 2626. Total energy = 4754.6753 kcal/mol (4750.3576 without restraints) Performing minimization step: 2627. Total energy = 4753.4464 kcal/mol (4749.1315 without restraints) Performing minimization step: 2628. Total energy = 4752.2192 kcal/mol (4747.9068 without restraints) Performing minimization step: 2629. Total energy = 4750.9927 kcal/mol (4746.6830 without restraints) Performing minimization step: 2630. Total energy = 4749.7677 kcal/mol (4745.4606 without restraints) Performing minimization step: 2631. Total energy = 4748.5440 kcal/mol (4744.2395 without restraints) Performing minimization step: 2632. Total energy = 4747.3213 kcal/mol (4743.0195 without restraints) Performing minimization step: 2633. Total energy = 4746.1003 kcal/mol (4741.8012 without restraints) Performing minimization step: 2634. Total energy = 4744.8806 kcal/mol (4740.5839 without restraints) Performing minimization step: 2635. Total energy = 4743.6618 kcal/mol (4739.3679 without restraints) Performing minimization step: 2636. Total energy = 4742.4446 kcal/mol (4738.1533 without restraints) Performing minimization step: 2637. Total energy = 4741.2288 kcal/mol (4736.9402 without restraints) Performing minimization step: 2638. Total energy = 4740.0136 kcal/mol (4735.7276 without restraints) Performing minimization step: 2639. Total energy = 4738.8002 kcal/mol (4734.5170 without restraints) Performing minimization step: 2640. Total energy = 4737.5879 kcal/mol (4733.3073 without restraints) Performing minimization step: 2641. Total energy = 4736.3771 kcal/mol (4732.0991 without restraints) Performing minimization step: 2642. Total energy = 4735.1673 kcal/mol (4730.8919 without restraints) Performing minimization step: 2643. Total energy = 4733.9594 kcal/mol (4729.6866 without restraints) Performing minimization step: 2644. Total energy = 4732.7526 kcal/mol (4728.4825 without restraints) Performing minimization step: 2645. Total energy = 4731.5476 kcal/mol (4727.2802 without restraints) Performing minimization step: 2646. Total energy = 4730.3428 kcal/mol (4726.0779 without restraints) Performing minimization step: 2647. Total energy = 4729.1393 kcal/mol (4724.8771 without restraints) Performing minimization step: 2648. Total energy = 4727.9367 kcal/mol (4723.6770 without restraints) Performing minimization step: 2649. Total energy = 4726.7357 kcal/mol (4722.4787 without restraints) Performing minimization step: 2650. Total energy = 4725.5362 kcal/mol (4721.2818 without restraints) Performing minimization step: 2651. Total energy = 4724.3373 kcal/mol (4720.0855 without restraints) Performing minimization step: 2652. Total energy = 4723.1409 kcal/mol (4718.8920 without restraints) Performing minimization step: 2653. Total energy = 4721.9454 kcal/mol (4717.6987 without restraints) Performing minimization step: 2654. Total energy = 4720.7510 kcal/mol (4716.5070 without restraints) Performing minimization step: 2655. Total energy = 4719.5574 kcal/mol (4715.3160 without restraints) Performing minimization step: 2656. Total energy = 4718.3652 kcal/mol (4714.1264 without restraints) Performing minimization step: 2657. Total energy = 4717.1737 kcal/mol (4712.9375 without restraints) Performing minimization step: 2658. Total energy = 4715.9839 kcal/mol (4711.7504 without restraints) Performing minimization step: 2659. Total energy = 4714.7955 kcal/mol (4710.5646 without restraints) Performing minimization step: 2660. Total energy = 4713.6081 kcal/mol (4709.3798 without restraints) Performing minimization step: 2661. Total energy = 4712.4220 kcal/mol (4708.1963 without restraints) Performing minimization step: 2662. Total energy = 4711.2372 kcal/mol (4707.0141 without restraints) Performing minimization step: 2663. Total energy = 4710.0535 kcal/mol (4705.8330 without restraints) Performing minimization step: 2664. Total energy = 4708.8713 kcal/mol (4704.6535 without restraints) Performing minimization step: 2665. Total energy = 4707.6901 kcal/mol (4703.4748 without restraints) Performing minimization step: 2666. Total energy = 4706.5101 kcal/mol (4702.2974 without restraints) Performing minimization step: 2667. Total energy = 4705.3311 kcal/mol (4701.1210 without restraints) Performing minimization step: 2668. Total energy = 4704.1536 kcal/mol (4699.9462 without restraints) Performing minimization step: 2669. Total energy = 4702.9773 kcal/mol (4698.7724 without restraints) Performing minimization step: 2670. Total energy = 4701.8020 kcal/mol (4697.5997 without restraints) Performing minimization step: 2671. Total energy = 4700.6283 kcal/mol (4696.4286 without restraints) Performing minimization step: 2672. Total energy = 4699.4554 kcal/mol (4695.2582 without restraints) Performing minimization step: 2673. Total energy = 4698.2846 kcal/mol (4694.0904 without restraints) Performing minimization step: 2674. Total energy = 4697.1150 kcal/mol (4692.9231 without restraints) Performing minimization step: 2675. Total energy = 4695.9457 kcal/mol (4691.7563 without restraints) Performing minimization step: 2676. Total energy = 4694.7778 kcal/mol (4690.5910 without restraints) Performing minimization step: 2677. Total energy = 4693.6112 kcal/mol (4689.4269 without restraints) Performing minimization step: 2678. Total energy = 4692.4456 kcal/mol (4688.2639 without restraints) Performing minimization step: 2679. Total energy = 4691.2814 kcal/mol (4687.1023 without restraints) Performing minimization step: 2680. Total energy = 4690.1184 kcal/mol (4685.9418 without restraints) Performing minimization step: 2681. Total energy = 4688.9569 kcal/mol (4684.7830 without restraints) Performing minimization step: 2682. Total energy = 4687.7968 kcal/mol (4683.6254 without restraints) Performing minimization step: 2683. Total energy = 4686.6377 kcal/mol (4682.4688 without restraints) Performing minimization step: 2684. Total energy = 4685.4794 kcal/mol (4681.3132 without restraints) Performing minimization step: 2685. Total energy = 4684.3221 kcal/mol (4680.1585 without restraints) Performing minimization step: 2686. Total energy = 4683.1667 kcal/mol (4679.0055 without restraints) Performing minimization step: 2687. Total energy = 4682.0120 kcal/mol (4677.8535 without restraints) Performing minimization step: 2688. Total energy = 4680.8582 kcal/mol (4676.7022 without restraints) Performing minimization step: 2689. Total energy = 4679.7062 kcal/mol (4675.5528 without restraints) Performing minimization step: 2690. Total energy = 4678.5551 kcal/mol (4674.4043 without restraints) Performing minimization step: 2691. Total energy = 4677.4052 kcal/mol (4673.2569 without restraints) Performing minimization step: 2692. Total energy = 4676.2567 kcal/mol (4672.1109 without restraints) Performing minimization step: 2693. Total energy = 4675.1094 kcal/mol (4670.9664 without restraints) Performing minimization step: 2694. Total energy = 4673.9633 kcal/mol (4669.8227 without restraints) Performing minimization step: 2695. Total energy = 4672.8182 kcal/mol (4668.6803 without restraints) Performing minimization step: 2696. Total energy = 4671.6746 kcal/mol (4667.5391 without restraints) Performing minimization step: 2697. Total energy = 4670.5318 kcal/mol (4666.3989 without restraints) Performing minimization step: 2698. Total energy = 4669.3906 kcal/mol (4665.2600 without restraints) Performing minimization step: 2699. Total energy = 4668.2504 kcal/mol (4664.1226 without restraints) Performing minimization step: 2700. Total energy = 4667.1116 kcal/mol (4662.9863 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 4665.9736 kcal/mol (4661.8508 without restraints) Performing minimization step: 2702. Total energy = 4664.8366 kcal/mol (4660.7164 without restraints) Performing minimization step: 2703. Total energy = 4663.7011 kcal/mol (4659.5834 without restraints) Performing minimization step: 2704. Total energy = 4662.5664 kcal/mol (4658.4512 without restraints) Performing minimization step: 2705. Total energy = 4661.4327 kcal/mol (4657.3201 without restraints) Performing minimization step: 2706. Total energy = 4660.3005 kcal/mol (4656.1904 without restraints) Performing minimization step: 2707. Total energy = 4659.1693 kcal/mol (4655.0618 without restraints) Performing minimization step: 2708. Total energy = 4658.0402 kcal/mol (4653.9352 without restraints) Performing minimization step: 2709. Total energy = 4656.9115 kcal/mol (4652.8090 without restraints) Performing minimization step: 2710. Total energy = 4655.7843 kcal/mol (4651.6843 without restraints) Performing minimization step: 2711. Total energy = 4654.6583 kcal/mol (4650.5609 without restraints) Performing minimization step: 2712. Total energy = 4653.5332 kcal/mol (4649.4384 without restraints) Performing minimization step: 2713. Total energy = 4652.4094 kcal/mol (4648.3171 without restraints) Performing minimization step: 2714. Total energy = 4651.2864 kcal/mol (4647.1965 without restraints) Performing minimization step: 2715. Total energy = 4650.1648 kcal/mol (4646.0774 without restraints) Performing minimization step: 2716. Total energy = 4649.0441 kcal/mol (4644.9593 without restraints) Performing minimization step: 2717. Total energy = 4647.9249 kcal/mol (4643.8427 without restraints) Performing minimization step: 2718. Total energy = 4646.8068 kcal/mol (4642.7270 without restraints) Performing minimization step: 2719. Total energy = 4645.6896 kcal/mol (4641.6124 without restraints) Performing minimization step: 2720. Total energy = 4644.5737 kcal/mol (4640.4991 without restraints) Performing minimization step: 2721. Total energy = 4643.4596 kcal/mol (4639.3875 without restraints) Performing minimization step: 2722. Total energy = 4642.3462 kcal/mol (4638.2765 without restraints) Performing minimization step: 2723. Total energy = 4641.2340 kcal/mol (4637.1667 without restraints) Performing minimization step: 2724. Total energy = 4640.1226 kcal/mol (4636.0580 without restraints) Performing minimization step: 2725. Total energy = 4639.0124 kcal/mol (4634.9502 without restraints) Performing minimization step: 2726. Total energy = 4637.9036 kcal/mol (4633.8440 without restraints) Performing minimization step: 2727. Total energy = 4636.7957 kcal/mol (4632.7385 without restraints) Performing minimization step: 2728. Total energy = 4635.6889 kcal/mol (4631.6342 without restraints) Performing minimization step: 2729. Total energy = 4634.5835 kcal/mol (4630.5315 without restraints) Performing minimization step: 2730. Total energy = 4633.4790 kcal/mol (4629.4294 without restraints) Performing minimization step: 2731. Total energy = 4632.3760 kcal/mol (4628.3290 without restraints) Performing minimization step: 2732. Total energy = 4631.2740 kcal/mol (4627.2292 without restraints) Performing minimization step: 2733. Total energy = 4630.1730 kcal/mol (4626.1308 without restraints) Performing minimization step: 2734. Total energy = 4629.0736 kcal/mol (4625.0340 without restraints) Performing minimization step: 2735. Total energy = 4627.9750 kcal/mol (4623.9379 without restraints) Performing minimization step: 2736. Total energy = 4626.8773 kcal/mol (4622.8426 without restraints) Performing minimization step: 2737. Total energy = 4625.7807 kcal/mol (4621.7486 without restraints) Performing minimization step: 2738. Total energy = 4624.6858 kcal/mol (4620.6561 without restraints) Performing minimization step: 2739. Total energy = 4623.5923 kcal/mol (4619.5650 without restraints) Performing minimization step: 2740. Total energy = 4622.4990 kcal/mol (4618.4743 without restraints) Performing minimization step: 2741. Total energy = 4621.4076 kcal/mol (4617.3854 without restraints) Performing minimization step: 2742. Total energy = 4620.3168 kcal/mol (4616.2972 without restraints) Performing minimization step: 2743. Total energy = 4619.2271 kcal/mol (4615.2098 without restraints) Performing minimization step: 2744. Total energy = 4618.1381 kcal/mol (4614.1232 without restraints) Performing minimization step: 2745. Total energy = 4617.0506 kcal/mol (4613.0383 without restraints) Performing minimization step: 2746. Total energy = 4615.9639 kcal/mol (4611.9540 without restraints) Performing minimization step: 2747. Total energy = 4614.8787 kcal/mol (4610.8714 without restraints) Performing minimization step: 2748. Total energy = 4613.7943 kcal/mol (4609.7894 without restraints) Performing minimization step: 2749. Total energy = 4612.7113 kcal/mol (4608.7089 without restraints) Performing minimization step: 2750. Total energy = 4611.6296 kcal/mol (4607.6295 without restraints) Performing minimization step: 2751. Total energy = 4610.5485 kcal/mol (4606.5511 without restraints) Performing minimization step: 2752. Total energy = 4609.4691 kcal/mol (4605.4741 without restraints) Performing minimization step: 2753. Total energy = 4608.3904 kcal/mol (4604.3980 without restraints) Performing minimization step: 2754. Total energy = 4607.3131 kcal/mol (4603.3230 without restraints) Performing minimization step: 2755. Total energy = 4606.2363 kcal/mol (4602.2487 without restraints) Performing minimization step: 2756. Total energy = 4605.1611 kcal/mol (4601.1759 without restraints) Performing minimization step: 2757. Total energy = 4604.0866 kcal/mol (4600.1038 without restraints) Performing minimization step: 2758. Total energy = 4603.0135 kcal/mol (4599.0333 without restraints) Performing minimization step: 2759. Total energy = 4601.9416 kcal/mol (4597.9640 without restraints) Performing minimization step: 2760. Total energy = 4600.8708 kcal/mol (4596.8955 without restraints) Performing minimization step: 2761. Total energy = 4599.8010 kcal/mol (4595.8281 without restraints) Performing minimization step: 2762. Total energy = 4598.7321 kcal/mol (4594.7617 without restraints) Performing minimization step: 2763. Total energy = 4597.6646 kcal/mol (4593.6967 without restraints) Performing minimization step: 2764. Total energy = 4596.5980 kcal/mol (4592.6325 without restraints) Performing minimization step: 2765. Total energy = 4595.5326 kcal/mol (4591.5696 without restraints) Performing minimization step: 2766. Total energy = 4594.4682 kcal/mol (4590.5076 without restraints) Performing minimization step: 2767. Total energy = 4593.4049 kcal/mol (4589.4468 without restraints) Performing minimization step: 2768. Total energy = 4592.3427 kcal/mol (4588.3870 without restraints) Performing minimization step: 2769. Total energy = 4591.2815 kcal/mol (4587.3282 without restraints) Performing minimization step: 2770. Total energy = 4590.2216 kcal/mol (4586.2708 without restraints) Performing minimization step: 2771. Total energy = 4589.1628 kcal/mol (4585.2144 without restraints) Performing minimization step: 2772. Total energy = 4588.1049 kcal/mol (4584.1593 without restraints) Performing minimization step: 2773. Total energy = 4587.0486 kcal/mol (4583.1051 without restraints) Performing minimization step: 2774. Total energy = 4585.9928 kcal/mol (4582.0518 without restraints) Performing minimization step: 2775. Total energy = 4584.9382 kcal/mol (4580.9995 without restraints) Performing minimization step: 2776. Total energy = 4583.8847 kcal/mol (4579.9485 without restraints) Performing minimization step: 2777. Total energy = 4582.8322 kcal/mol (4578.8985 without restraints) Performing minimization step: 2778. Total energy = 4581.7810 kcal/mol (4577.8497 without restraints) Performing minimization step: 2779. Total energy = 4580.7308 kcal/mol (4576.8019 without restraints) Performing minimization step: 2780. Total energy = 4579.6815 kcal/mol (4575.7550 without restraints) Performing minimization step: 2781. Total energy = 4578.6333 kcal/mol (4574.7093 without restraints) Performing minimization step: 2782. Total energy = 4577.5866 kcal/mol (4573.6650 without restraints) Performing minimization step: 2783. Total energy = 4576.5402 kcal/mol (4572.6210 without restraints) Performing minimization step: 2784. Total energy = 4575.4948 kcal/mol (4571.5781 without restraints) Performing minimization step: 2785. Total energy = 4574.4512 kcal/mol (4570.5368 without restraints) Performing minimization step: 2786. Total energy = 4573.4084 kcal/mol (4569.4965 without restraints) Performing minimization step: 2787. Total energy = 4572.3666 kcal/mol (4568.4570 without restraints) Performing minimization step: 2788. Total energy = 4571.3258 kcal/mol (4567.4186 without restraints) Performing minimization step: 2789. Total energy = 4570.2860 kcal/mol (4566.3813 without restraints) Performing minimization step: 2790. Total energy = 4569.2473 kcal/mol (4565.3450 without restraints) Performing minimization step: 2791. Total energy = 4568.2098 kcal/mol (4564.3099 without restraints) Performing minimization step: 2792. Total energy = 4567.1736 kcal/mol (4563.2762 without restraints) Performing minimization step: 2793. Total energy = 4566.1391 kcal/mol (4562.2440 without restraints) Performing minimization step: 2794. Total energy = 4565.1051 kcal/mol (4561.2125 without restraints) Performing minimization step: 2795. Total energy = 4564.0721 kcal/mol (4560.1818 without restraints) Performing minimization step: 2796. Total energy = 4563.0400 kcal/mol (4559.1521 without restraints) Performing minimization step: 2797. Total energy = 4562.0094 kcal/mol (4558.1239 without restraints) Performing minimization step: 2798. Total energy = 4560.9792 kcal/mol (4557.0962 without restraints) Performing minimization step: 2799. Total energy = 4559.9501 kcal/mol (4556.0695 without restraints) Performing minimization step: 2800. Total energy = 4558.9223 kcal/mol (4555.0440 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 4557.8954 kcal/mol (4554.0195 without restraints) Performing minimization step: 2802. Total energy = 4556.8698 kcal/mol (4552.9964 without restraints) Performing minimization step: 2803. Total energy = 4555.8447 kcal/mol (4551.9736 without restraints) Performing minimization step: 2804. Total energy = 4554.8212 kcal/mol (4550.9525 without restraints) Performing minimization step: 2805. Total energy = 4553.7984 kcal/mol (4549.9319 without restraints) Performing minimization step: 2806. Total energy = 4552.7766 kcal/mol (4548.9127 without restraints) Performing minimization step: 2807. Total energy = 4551.7562 kcal/mol (4547.8947 without restraints) Performing minimization step: 2808. Total energy = 4550.7364 kcal/mol (4546.8772 without restraints) Performing minimization step: 2809. Total energy = 4549.7178 kcal/mol (4545.8610 without restraints) Performing minimization step: 2810. Total energy = 4548.7000 kcal/mol (4544.8456 without restraints) Performing minimization step: 2811. Total energy = 4547.6831 kcal/mol (4543.8311 without restraints) Performing minimization step: 2812. Total energy = 4546.6675 kcal/mol (4542.8180 without restraints) Performing minimization step: 2813. Total energy = 4545.6530 kcal/mol (4541.8057 without restraints) Performing minimization step: 2814. Total energy = 4544.6393 kcal/mol (4540.7944 without restraints) Performing minimization step: 2815. Total energy = 4543.6268 kcal/mol (4539.7844 without restraints) Performing minimization step: 2816. Total energy = 4542.6153 kcal/mol (4538.7753 without restraints) Performing minimization step: 2817. Total energy = 4541.6046 kcal/mol (4537.7668 without restraints) Performing minimization step: 2818. Total energy = 4540.5951 kcal/mol (4536.7597 without restraints) Performing minimization step: 2819. Total energy = 4539.5860 kcal/mol (4535.7530 without restraints) Performing minimization step: 2820. Total energy = 4538.5788 kcal/mol (4534.7482 without restraints) Performing minimization step: 2821. Total energy = 4537.5724 kcal/mol (4533.7441 without restraints) Performing minimization step: 2822. Total energy = 4536.5671 kcal/mol (4532.7411 without restraints) Performing minimization step: 2823. Total energy = 4535.5623 kcal/mol (4531.7387 without restraints) Performing minimization step: 2824. Total energy = 4534.5588 kcal/mol (4530.7376 without restraints) Performing minimization step: 2825. Total energy = 4533.5562 kcal/mol (4529.7374 without restraints) Performing minimization step: 2826. Total energy = 4532.5546 kcal/mol (4528.7381 without restraints) Performing minimization step: 2827. Total energy = 4531.5547 kcal/mol (4527.7405 without restraints) Performing minimization step: 2828. Total energy = 4530.5551 kcal/mol (4526.7433 without restraints) Performing minimization step: 2829. Total energy = 4529.5569 kcal/mol (4525.7474 without restraints) Performing minimization step: 2830. Total energy = 4528.5599 kcal/mol (4524.7528 without restraints) Performing minimization step: 2831. Total energy = 4527.5636 kcal/mol (4523.7589 without restraints) Performing minimization step: 2832. Total energy = 4526.5683 kcal/mol (4522.7659 without restraints) Performing minimization step: 2833. Total energy = 4525.5743 kcal/mol (4521.7741 without restraints) Performing minimization step: 2834. Total energy = 4524.5810 kcal/mol (4520.7833 without restraints) Performing minimization step: 2835. Total energy = 4523.5886 kcal/mol (4519.7933 without restraints) Performing minimization step: 2836. Total energy = 4522.5969 kcal/mol (4518.8039 without restraints) Performing minimization step: 2837. Total energy = 4521.6067 kcal/mol (4517.8160 without restraints) Performing minimization step: 2838. Total energy = 4520.6175 kcal/mol (4516.8292 without restraints) Performing minimization step: 2839. Total energy = 4519.6291 kcal/mol (4515.8431 without restraints) Performing minimization step: 2840. Total energy = 4518.6415 kcal/mol (4514.8578 without restraints) Performing minimization step: 2841. Total energy = 4517.6549 kcal/mol (4513.8736 without restraints) Performing minimization step: 2842. Total energy = 4516.6696 kcal/mol (4512.8906 without restraints) Performing minimization step: 2843. Total energy = 4515.6854 kcal/mol (4511.9087 without restraints) Performing minimization step: 2844. Total energy = 4514.7026 kcal/mol (4510.9283 without restraints) Performing minimization step: 2845. Total energy = 4513.7209 kcal/mol (4509.9491 without restraints) Performing minimization step: 2846. Total energy = 4512.7397 kcal/mol (4508.9700 without restraints) Performing minimization step: 2847. Total energy = 4511.7594 kcal/mol (4507.9922 without restraints) Performing minimization step: 2848. Total energy = 4510.7801 kcal/mol (4507.0151 without restraints) Performing minimization step: 2849. Total energy = 4509.8016 kcal/mol (4506.0389 without restraints) Performing minimization step: 2850. Total energy = 4508.8243 kcal/mol (4505.0640 without restraints) Performing minimization step: 2851. Total energy = 4507.8479 kcal/mol (4504.0898 without restraints) Performing minimization step: 2852. Total energy = 4506.8724 kcal/mol (4503.1166 without restraints) Performing minimization step: 2853. Total energy = 4505.8981 kcal/mol (4502.1448 without restraints) Performing minimization step: 2854. Total energy = 4504.9250 kcal/mol (4501.1738 without restraints) Performing minimization step: 2855. Total energy = 4503.9528 kcal/mol (4500.2040 without restraints) Performing minimization step: 2856. Total energy = 4502.9812 kcal/mol (4499.2347 without restraints) Performing minimization step: 2857. Total energy = 4502.0110 kcal/mol (4498.2668 without restraints) Performing minimization step: 2858. Total energy = 4501.0413 kcal/mol (4497.2994 without restraints) Performing minimization step: 2859. Total energy = 4500.0728 kcal/mol (4496.3332 without restraints) Performing minimization step: 2860. Total energy = 4499.1048 kcal/mol (4495.3675 without restraints) Performing minimization step: 2861. Total energy = 4498.1380 kcal/mol (4494.4030 without restraints) Performing minimization step: 2862. Total energy = 4497.1727 kcal/mol (4493.4400 without restraints) Performing minimization step: 2863. Total energy = 4496.2082 kcal/mol (4492.4778 without restraints) Performing minimization step: 2864. Total energy = 4495.2449 kcal/mol (4491.5168 without restraints) Performing minimization step: 2865. Total energy = 4494.2822 kcal/mol (4490.5564 without restraints) Performing minimization step: 2866. Total energy = 4493.3208 kcal/mol (4489.5973 without restraints) Performing minimization step: 2867. Total energy = 4492.3599 kcal/mol (4488.6388 without restraints) Performing minimization step: 2868. Total energy = 4491.4002 kcal/mol (4487.6813 without restraints) Performing minimization step: 2869. Total energy = 4490.4413 kcal/mol (4486.7248 without restraints) Performing minimization step: 2870. Total energy = 4489.4831 kcal/mol (4485.7688 without restraints) Performing minimization step: 2871. Total energy = 4488.5259 kcal/mol (4484.8140 without restraints) Performing minimization step: 2872. Total energy = 4487.5710 kcal/mol (4483.8613 without restraints) Performing minimization step: 2873. Total energy = 4486.6160 kcal/mol (4482.9086 without restraints) Performing minimization step: 2874. Total energy = 4485.6617 kcal/mol (4481.9566 without restraints) Performing minimization step: 2875. Total energy = 4484.7085 kcal/mol (4481.0056 without restraints) Performing minimization step: 2876. Total energy = 4483.7565 kcal/mol (4480.0558 without restraints) Performing minimization step: 2877. Total energy = 4482.8052 kcal/mol (4479.1070 without restraints) Performing minimization step: 2878. Total energy = 4481.8550 kcal/mol (4478.1589 without restraints) Performing minimization step: 2879. Total energy = 4480.9057 kcal/mol (4477.2119 without restraints) Performing minimization step: 2880. Total energy = 4479.9578 kcal/mol (4476.2663 without restraints) Performing minimization step: 2881. Total energy = 4479.0101 kcal/mol (4475.3209 without restraints) Performing minimization step: 2882. Total energy = 4478.0638 kcal/mol (4474.3769 without restraints) Performing minimization step: 2883. Total energy = 4477.1181 kcal/mol (4473.4334 without restraints) Performing minimization step: 2884. Total energy = 4476.1734 kcal/mol (4472.4911 without restraints) Performing minimization step: 2885. Total energy = 4475.2295 kcal/mol (4471.5493 without restraints) Performing minimization step: 2886. Total energy = 4474.2866 kcal/mol (4470.6087 without restraints) Performing minimization step: 2887. Total energy = 4473.3446 kcal/mol (4469.6690 without restraints) Performing minimization step: 2888. Total energy = 4472.4038 kcal/mol (4468.7304 without restraints) Performing minimization step: 2889. Total energy = 4471.4636 kcal/mol (4467.7925 without restraints) Performing minimization step: 2890. Total energy = 4470.5247 kcal/mol (4466.8558 without restraints) Performing minimization step: 2891. Total energy = 4469.5868 kcal/mol (4465.9203 without restraints) Performing minimization step: 2892. Total energy = 4468.6497 kcal/mol (4464.9855 without restraints) Performing minimization step: 2893. Total energy = 4467.7135 kcal/mol (4464.0514 without restraints) Performing minimization step: 2894. Total energy = 4466.7781 kcal/mol (4463.1182 without restraints) Performing minimization step: 2895. Total energy = 4465.8436 kcal/mol (4462.1862 without restraints) Performing minimization step: 2896. Total energy = 4464.9098 kcal/mol (4461.2544 without restraints) Performing minimization step: 2897. Total energy = 4463.9780 kcal/mol (4460.3253 without restraints) Performing minimization step: 2898. Total energy = 4463.0465 kcal/mol (4459.3957 without restraints) Performing minimization step: 2899. Total energy = 4462.1155 kcal/mol (4458.4669 without restraints) Performing minimization step: 2900. Total energy = 4461.1858 kcal/mol (4457.5395 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 4460.2570 kcal/mol (4456.6130 without restraints) Performing minimization step: 2902. Total energy = 4459.3288 kcal/mol (4455.6869 without restraints) Performing minimization step: 2903. Total energy = 4458.4016 kcal/mol (4454.7620 without restraints) Performing minimization step: 2904. Total energy = 4457.4757 kcal/mol (4453.8383 without restraints) Performing minimization step: 2905. Total energy = 4456.5506 kcal/mol (4452.9156 without restraints) Performing minimization step: 2906. Total energy = 4455.6267 kcal/mol (4451.9939 without restraints) Performing minimization step: 2907. Total energy = 4454.7035 kcal/mol (4451.0727 without restraints) Performing minimization step: 2908. Total energy = 4453.7810 kcal/mol (4450.1525 without restraints) Performing minimization step: 2909. Total energy = 4452.8596 kcal/mol (4449.2333 without restraints) Performing minimization step: 2910. Total energy = 4451.9389 kcal/mol (4448.3150 without restraints) Performing minimization step: 2911. Total energy = 4451.0189 kcal/mol (4447.3970 without restraints) Performing minimization step: 2912. Total energy = 4450.1001 kcal/mol (4446.4806 without restraints) Performing minimization step: 2913. Total energy = 4449.1825 kcal/mol (4445.5653 without restraints) Performing minimization step: 2914. Total energy = 4448.2654 kcal/mol (4444.6504 without restraints) Performing minimization step: 2915. Total energy = 4447.3489 kcal/mol (4443.7360 without restraints) Performing minimization step: 2916. Total energy = 4446.4335 kcal/mol (4442.8228 without restraints) Performing minimization step: 2917. Total energy = 4445.5191 kcal/mol (4441.9106 without restraints) Performing minimization step: 2918. Total energy = 4444.6061 kcal/mol (4440.9998 without restraints) Performing minimization step: 2919. Total energy = 4443.6933 kcal/mol (4440.0892 without restraints) Performing minimization step: 2920. Total energy = 4442.7816 kcal/mol (4439.1798 without restraints) Performing minimization step: 2921. Total energy = 4441.8708 kcal/mol (4438.2712 without restraints) Performing minimization step: 2922. Total energy = 4440.9615 kcal/mol (4437.3641 without restraints) Performing minimization step: 2923. Total energy = 4440.0526 kcal/mol (4436.4574 without restraints) Performing minimization step: 2924. Total energy = 4439.1444 kcal/mol (4435.5514 without restraints) Performing minimization step: 2925. Total energy = 4438.2372 kcal/mol (4434.6464 without restraints) Performing minimization step: 2926. Total energy = 4437.3310 kcal/mol (4433.7424 without restraints) Performing minimization step: 2927. Total energy = 4436.4257 kcal/mol (4432.8394 without restraints) Performing minimization step: 2928. Total energy = 4435.5213 kcal/mol (4431.9372 without restraints) Performing minimization step: 2929. Total energy = 4434.6181 kcal/mol (4431.0361 without restraints) Performing minimization step: 2930. Total energy = 4433.7153 kcal/mol (4430.1355 without restraints) Performing minimization step: 2931. Total energy = 4432.8139 kcal/mol (4429.2366 without restraints) Performing minimization step: 2932. Total energy = 4431.9130 kcal/mol (4428.3376 without restraints) Performing minimization step: 2933. Total energy = 4431.0131 kcal/mol (4427.4399 without restraints) Performing minimization step: 2934. Total energy = 4430.1138 kcal/mol (4426.5428 without restraints) Performing minimization step: 2935. Total energy = 4429.2157 kcal/mol (4425.6469 without restraints) Performing minimization step: 2936. Total energy = 4428.3184 kcal/mol (4424.7519 without restraints) Performing minimization step: 2937. Total energy = 4427.4220 kcal/mol (4423.8577 without restraints) Performing minimization step: 2938. Total energy = 4426.5264 kcal/mol (4422.9642 without restraints) Performing minimization step: 2939. Total energy = 4425.6313 kcal/mol (4422.0710 without restraints) Performing minimization step: 2940. Total energy = 4424.7371 kcal/mol (4421.1792 without restraints) Performing minimization step: 2941. Total energy = 4423.8443 kcal/mol (4420.2885 without restraints) Performing minimization step: 2942. Total energy = 4422.9522 kcal/mol (4419.3987 without restraints) Performing minimization step: 2943. Total energy = 4422.0609 kcal/mol (4418.5096 without restraints) Performing minimization step: 2944. Total energy = 4421.1705 kcal/mol (4417.6213 without restraints) Performing minimization step: 2945. Total energy = 4420.2811 kcal/mol (4416.7339 without restraints) Performing minimization step: 2946. Total energy = 4419.3922 kcal/mol (4415.8471 without restraints) Performing minimization step: 2947. Total energy = 4418.5042 kcal/mol (4414.9615 without restraints) Performing minimization step: 2948. Total energy = 4417.6174 kcal/mol (4414.0769 without restraints) Performing minimization step: 2949. Total energy = 4416.7314 kcal/mol (4413.1930 without restraints) Performing minimization step: 2950. Total energy = 4415.8461 kcal/mol (4412.3100 without restraints) Performing minimization step: 2951. Total energy = 4414.9620 kcal/mol (4411.4280 without restraints) Performing minimization step: 2952. Total energy = 4414.0784 kcal/mol (4410.5466 without restraints) Performing minimization step: 2953. Total energy = 4413.1960 kcal/mol (4409.6663 without restraints) Performing minimization step: 2954. Total energy = 4412.3140 kcal/mol (4408.7865 without restraints) Performing minimization step: 2955. Total energy = 4411.4331 kcal/mol (4407.9077 without restraints) Performing minimization step: 2956. Total energy = 4410.5534 kcal/mol (4407.0302 without restraints) Performing minimization step: 2957. Total energy = 4409.6738 kcal/mol (4406.1525 without restraints) Performing minimization step: 2958. Total energy = 4408.7952 kcal/mol (4405.2763 without restraints) Performing minimization step: 2959. Total energy = 4407.9187 kcal/mol (4404.4020 without restraints) Performing minimization step: 2960. Total energy = 4407.0423 kcal/mol (4403.5277 without restraints) Performing minimization step: 2961. Total energy = 4406.1662 kcal/mol (4402.6537 without restraints) Performing minimization step: 2962. Total energy = 4405.2911 kcal/mol (4401.7808 without restraints) Performing minimization step: 2963. Total energy = 4404.4174 kcal/mol (4400.9092 without restraints) Performing minimization step: 2964. Total energy = 4403.5441 kcal/mol (4400.0380 without restraints) Performing minimization step: 2965. Total energy = 4402.6716 kcal/mol (4399.1677 without restraints) Performing minimization step: 2966. Total energy = 4401.8003 kcal/mol (4398.2985 without restraints) Performing minimization step: 2967. Total energy = 4400.9298 kcal/mol (4397.4304 without restraints) Performing minimization step: 2968. Total energy = 4400.0604 kcal/mol (4396.5629 without restraints) Performing minimization step: 2969. Total energy = 4399.1922 kcal/mol (4395.6970 without restraints) Performing minimization step: 2970. Total energy = 4398.3246 kcal/mol (4394.8314 without restraints) Performing minimization step: 2971. Total energy = 4397.4580 kcal/mol (4393.9670 without restraints) Performing minimization step: 2972. Total energy = 4396.5914 kcal/mol (4393.1024 without restraints) Performing minimization step: 2973. Total energy = 4395.7259 kcal/mol (4392.2393 without restraints) Performing minimization step: 2974. Total energy = 4394.8613 kcal/mol (4391.3766 without restraints) Performing minimization step: 2975. Total energy = 4393.9974 kcal/mol (4390.5151 without restraints) Performing minimization step: 2976. Total energy = 4393.1345 kcal/mol (4389.6540 without restraints) Performing minimization step: 2977. Total energy = 4392.2719 kcal/mol (4388.7935 without restraints) Performing minimization step: 2978. Total energy = 4391.4102 kcal/mol (4387.9339 without restraints) Performing minimization step: 2979. Total energy = 4390.5502 kcal/mol (4387.0761 without restraints) Performing minimization step: 2980. Total energy = 4389.6902 kcal/mol (4386.2182 without restraints) Performing minimization step: 2981. Total energy = 4388.8312 kcal/mol (4385.3613 without restraints) Performing minimization step: 2982. Total energy = 4387.9733 kcal/mol (4384.5055 without restraints) Performing minimization step: 2983. Total energy = 4387.1167 kcal/mol (4383.6511 without restraints) Performing minimization step: 2984. Total energy = 4386.2599 kcal/mol (4382.7963 without restraints) Performing minimization step: 2985. Total energy = 4385.4043 kcal/mol (4381.9429 without restraints) Performing minimization step: 2986. Total energy = 4384.5492 kcal/mol (4381.0899 without restraints) Performing minimization step: 2987. Total energy = 4383.6950 kcal/mol (4380.2378 without restraints) Performing minimization step: 2988. Total energy = 4382.8424 kcal/mol (4379.3873 without restraints) Performing minimization step: 2989. Total energy = 4381.9902 kcal/mol (4378.5372 without restraints) Performing minimization step: 2990. Total energy = 4381.1388 kcal/mol (4377.6880 without restraints) Performing minimization step: 2991. Total energy = 4380.2884 kcal/mol (4376.8396 without restraints) Performing minimization step: 2992. Total energy = 4379.4385 kcal/mol (4375.9918 without restraints) Performing minimization step: 2993. Total energy = 4378.5895 kcal/mol (4375.1449 without restraints) Performing minimization step: 2994. Total energy = 4377.7410 kcal/mol (4374.2985 without restraints) Performing minimization step: 2995. Total energy = 4376.8938 kcal/mol (4373.4535 without restraints) Performing minimization step: 2996. Total energy = 4376.0477 kcal/mol (4372.6094 without restraints) Performing minimization step: 2997. Total energy = 4375.2023 kcal/mol (4371.7661 without restraints) Performing minimization step: 2998. Total energy = 4374.3572 kcal/mol (4370.9231 without restraints) Performing minimization step: 2999. Total energy = 4373.5126 kcal/mol (4370.0805 without restraints) Performing minimization step: 3000. Total energy = 4372.6697 kcal/mol (4369.2398 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 4371.8270 kcal/mol (4368.3991 without restraints) Performing minimization step: 3002. Total energy = 4370.9854 kcal/mol (4367.5596 without restraints) Performing minimization step: 3003. Total energy = 4370.1445 kcal/mol (4366.7209 without restraints) Performing minimization step: 3004. Total energy = 4369.3046 kcal/mol (4365.8829 without restraints) Performing minimization step: 3005. Total energy = 4368.4657 kcal/mol (4365.0462 without restraints) Performing minimization step: 3006. Total energy = 4367.6272 kcal/mol (4364.2098 without restraints) Performing minimization step: 3007. Total energy = 4366.7895 kcal/mol (4363.3741 without restraints) Performing minimization step: 3008. Total energy = 4365.9522 kcal/mol (4362.5386 without restraints) Performing minimization step: 3009. Total energy = 4365.1160 kcal/mol (4361.7047 without restraints) Performing minimization step: 3010. Total energy = 4364.2808 kcal/mol (4360.8717 without restraints) Performing minimization step: 3011. Total energy = 4363.4462 kcal/mol (4360.0391 without restraints) Performing minimization step: 3012. Total energy = 4362.6125 kcal/mol (4359.2075 without restraints) Performing minimization step: 3013. Total energy = 4361.7797 kcal/mol (4358.3767 without restraints) Performing minimization step: 3014. Total energy = 4360.9471 kcal/mol (4357.5461 without restraints) Performing minimization step: 3015. Total energy = 4360.1156 kcal/mol (4356.7168 without restraints) Performing minimization step: 3016. Total energy = 4359.2854 kcal/mol (4355.8886 without restraints) Performing minimization step: 3017. Total energy = 4358.4555 kcal/mol (4355.0608 without restraints) Performing minimization step: 3018. Total energy = 4357.6266 kcal/mol (4354.2339 without restraints) Performing minimization step: 3019. Total energy = 4356.7985 kcal/mol (4353.4079 without restraints) Performing minimization step: 3020. Total energy = 4355.9709 kcal/mol (4352.5824 without restraints) Performing minimization step: 3021. Total energy = 4355.1442 kcal/mol (4351.7577 without restraints) Performing minimization step: 3022. Total energy = 4354.3186 kcal/mol (4350.9342 without restraints) Performing minimization step: 3023. Total energy = 4353.4935 kcal/mol (4350.1111 without restraints) Performing minimization step: 3024. Total energy = 4352.6692 kcal/mol (4349.2890 without restraints) Performing minimization step: 3025. Total energy = 4351.8455 kcal/mol (4348.4672 without restraints) Performing minimization step: 3026. Total energy = 4351.0227 kcal/mol (4347.6464 without restraints) Performing minimization step: 3027. Total energy = 4350.2008 kcal/mol (4346.8264 without restraints) Performing minimization step: 3028. Total energy = 4349.3794 kcal/mol (4346.0072 without restraints) Performing minimization step: 3029. Total energy = 4348.5591 kcal/mol (4345.1890 without restraints) Performing minimization step: 3030. Total energy = 4347.7393 kcal/mol (4344.3712 without restraints) Performing minimization step: 3031. Total energy = 4346.9207 kcal/mol (4343.5547 without restraints) Performing minimization step: 3032. Total energy = 4346.1024 kcal/mol (4342.7384 without restraints) Performing minimization step: 3033. Total energy = 4345.2851 kcal/mol (4341.9231 without restraints) Performing minimization step: 3034. Total energy = 4344.4687 kcal/mol (4341.1086 without restraints) Performing minimization step: 3035. Total energy = 4343.6528 kcal/mol (4340.2948 without restraints) Performing minimization step: 3036. Total energy = 4342.8380 kcal/mol (4339.4821 without restraints) Performing minimization step: 3037. Total energy = 4342.0239 kcal/mol (4338.6700 without restraints) Performing minimization step: 3038. Total energy = 4341.2097 kcal/mol (4337.8579 without restraints) Performing minimization step: 3039. Total energy = 4340.3970 kcal/mol (4337.0472 without restraints) Performing minimization step: 3040. Total energy = 4339.5850 kcal/mol (4336.2372 without restraints) Performing minimization step: 3041. Total energy = 4338.7738 kcal/mol (4335.4280 without restraints) Performing minimization step: 3042. Total energy = 4337.9639 kcal/mol (4334.6202 without restraints) Performing minimization step: 3043. Total energy = 4337.1541 kcal/mol (4333.8124 without restraints) Performing minimization step: 3044. Total energy = 4336.3453 kcal/mol (4333.0055 without restraints) Performing minimization step: 3045. Total energy = 4335.5371 kcal/mol (4332.1994 without restraints) Performing minimization step: 3046. Total energy = 4334.7294 kcal/mol (4331.3937 without restraints) Performing minimization step: 3047. Total energy = 4333.9232 kcal/mol (4330.5894 without restraints) Performing minimization step: 3048. Total energy = 4333.1173 kcal/mol (4329.7857 without restraints) Performing minimization step: 3049. Total energy = 4332.3129 kcal/mol (4328.9832 without restraints) Performing minimization step: 3050. Total energy = 4331.5086 kcal/mol (4328.1809 without restraints) Performing minimization step: 3051. Total energy = 4330.7050 kcal/mol (4327.3793 without restraints) Performing minimization step: 3052. Total energy = 4329.9023 kcal/mol (4326.5786 without restraints) Performing minimization step: 3053. Total energy = 4329.0999 kcal/mol (4325.7782 without restraints) Performing minimization step: 3054. Total energy = 4328.2987 kcal/mol (4324.9790 without restraints) Performing minimization step: 3055. Total energy = 4327.4980 kcal/mol (4324.1803 without restraints) Performing minimization step: 3056. Total energy = 4326.6981 kcal/mol (4323.3825 without restraints) Performing minimization step: 3057. Total energy = 4325.8996 kcal/mol (4322.5860 without restraints) Performing minimization step: 3058. Total energy = 4325.1013 kcal/mol (4321.7896 without restraints) Performing minimization step: 3059. Total energy = 4324.3037 kcal/mol (4320.9940 without restraints) Performing minimization step: 3060. Total energy = 4323.5067 kcal/mol (4320.1989 without restraints) Performing minimization step: 3061. Total energy = 4322.7104 kcal/mol (4319.4047 without restraints) Performing minimization step: 3062. Total energy = 4321.9151 kcal/mol (4318.6113 without restraints) Performing minimization step: 3063. Total energy = 4321.1204 kcal/mol (4317.8187 without restraints) Performing minimization step: 3064. Total energy = 4320.3265 kcal/mol (4317.0268 without restraints) Performing minimization step: 3065. Total energy = 4319.5332 kcal/mol (4316.2354 without restraints) Performing minimization step: 3066. Total energy = 4318.7414 kcal/mol (4315.4456 without restraints) Performing minimization step: 3067. Total energy = 4317.9499 kcal/mol (4314.6560 without restraints) Performing minimization step: 3068. Total energy = 4317.1590 kcal/mol (4313.8673 without restraints) Performing minimization step: 3069. Total energy = 4316.3690 kcal/mol (4313.0791 without restraints) Performing minimization step: 3070. Total energy = 4315.5795 kcal/mol (4312.2916 without restraints) Performing minimization step: 3071. Total energy = 4314.7910 kcal/mol (4311.5051 without restraints) Performing minimization step: 3072. Total energy = 4314.0033 kcal/mol (4310.7195 without restraints) Performing minimization step: 3073. Total energy = 4313.2161 kcal/mol (4309.9341 without restraints) Performing minimization step: 3074. Total energy = 4312.4295 kcal/mol (4309.1495 without restraints) Performing minimization step: 3075. Total energy = 4311.6437 kcal/mol (4308.3657 without restraints) Performing minimization step: 3076. Total energy = 4310.8590 kcal/mol (4307.5830 without restraints) Performing minimization step: 3077. Total energy = 4310.0744 kcal/mol (4306.8004 without restraints) Performing minimization step: 3078. Total energy = 4309.2908 kcal/mol (4306.0185 without restraints) Performing minimization step: 3079. Total energy = 4308.5083 kcal/mol (4305.2384 without restraints) Performing minimization step: 3080. Total energy = 4307.7267 kcal/mol (4304.4587 without restraints) Performing minimization step: 3081. Total energy = 4306.9456 kcal/mol (4303.6794 without restraints) Performing minimization step: 3082. Total energy = 4306.1647 kcal/mol (4302.9004 without restraints) Performing minimization step: 3083. Total energy = 4305.3847 kcal/mol (4302.1222 without restraints) Performing minimization step: 3084. Total energy = 4304.6054 kcal/mol (4301.3451 without restraints) Performing minimization step: 3085. Total energy = 4303.8272 kcal/mol (4300.5688 without restraints) Performing minimization step: 3086. Total energy = 4303.0494 kcal/mol (4299.7929 without restraints) Performing minimization step: 3087. Total energy = 4302.2723 kcal/mol (4299.0177 without restraints) Performing minimization step: 3088. Total energy = 4301.4959 kcal/mol (4298.2431 without restraints) Performing minimization step: 3089. Total energy = 4300.7208 kcal/mol (4297.4702 without restraints) Performing minimization step: 3090. Total energy = 4299.9462 kcal/mol (4296.6975 without restraints) Performing minimization step: 3091. Total energy = 4299.1720 kcal/mol (4295.9252 without restraints) Performing minimization step: 3092. Total energy = 4298.3989 kcal/mol (4295.1541 without restraints) Performing minimization step: 3093. Total energy = 4297.6267 kcal/mol (4294.3837 without restraints) Performing minimization step: 3094. Total energy = 4296.8546 kcal/mol (4293.6136 without restraints) Performing minimization step: 3095. Total energy = 4296.0836 kcal/mol (4292.8447 without restraints) Performing minimization step: 3096. Total energy = 4295.3131 kcal/mol (4292.0760 without restraints) Performing minimization step: 3097. Total energy = 4294.5434 kcal/mol (4291.3082 without restraints) Performing minimization step: 3098. Total energy = 4293.7741 kcal/mol (4290.5408 without restraints) Performing minimization step: 3099. Total energy = 4293.0053 kcal/mol (4289.7740 without restraints) Performing minimization step: 3100. Total energy = 4292.2375 kcal/mol (4289.0081 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 4291.4705 kcal/mol (4288.2430 without restraints) Performing minimization step: 3102. Total energy = 4290.7045 kcal/mol (4287.4789 without restraints) Performing minimization step: 3103. Total energy = 4289.9390 kcal/mol (4286.7153 without restraints) Performing minimization step: 3104. Total energy = 4289.1741 kcal/mol (4285.9524 without restraints) Performing minimization step: 3105. Total energy = 4288.4098 kcal/mol (4285.1899 without restraints) Performing minimization step: 3106. Total energy = 4287.6458 kcal/mol (4284.4279 without restraints) Performing minimization step: 3107. Total energy = 4286.8828 kcal/mol (4283.6668 without restraints) Performing minimization step: 3108. Total energy = 4286.1205 kcal/mol (4282.9065 without restraints) Performing minimization step: 3109. Total energy = 4285.3592 kcal/mol (4282.1470 without restraints) Performing minimization step: 3110. Total energy = 4284.5987 kcal/mol (4281.3885 without restraints) Performing minimization step: 3111. Total energy = 4283.8384 kcal/mol (4280.6300 without restraints) Performing minimization step: 3112. Total energy = 4283.0794 kcal/mol (4279.8729 without restraints) Performing minimization step: 3113. Total energy = 4282.3212 kcal/mol (4279.1166 without restraints) Performing minimization step: 3114. Total energy = 4281.5631 kcal/mol (4278.3604 without restraints) Performing minimization step: 3115. Total energy = 4280.8061 kcal/mol (4277.6053 without restraints) Performing minimization step: 3116. Total energy = 4280.0496 kcal/mol (4276.8506 without restraints) Performing minimization step: 3117. Total energy = 4279.2935 kcal/mol (4276.0966 without restraints) Performing minimization step: 3118. Total energy = 4278.5384 kcal/mol (4275.3434 without restraints) Performing minimization step: 3119. Total energy = 4277.7839 kcal/mol (4274.5909 without restraints) Performing minimization step: 3120. Total energy = 4277.0299 kcal/mol (4273.8386 without restraints) Performing minimization step: 3121. Total energy = 4276.2767 kcal/mol (4273.0873 without restraints) Performing minimization step: 3122. Total energy = 4275.5242 kcal/mol (4272.3367 without restraints) Performing minimization step: 3123. Total energy = 4274.7724 kcal/mol (4271.5868 without restraints) Performing minimization step: 3124. Total energy = 4274.0212 kcal/mol (4270.8375 without restraints) Performing minimization step: 3125. Total energy = 4273.2707 kcal/mol (4270.0889 without restraints) Performing minimization step: 3126. Total energy = 4272.5210 kcal/mol (4269.3410 without restraints) Performing minimization step: 3127. Total energy = 4271.7719 kcal/mol (4268.5939 without restraints) Performing minimization step: 3128. Total energy = 4271.0239 kcal/mol (4267.8478 without restraints) Performing minimization step: 3129. Total energy = 4270.2762 kcal/mol (4267.1019 without restraints) Performing minimization step: 3130. Total energy = 4269.5294 kcal/mol (4266.3569 without restraints) Performing minimization step: 3131. Total energy = 4268.7829 kcal/mol (4265.6124 without restraints) Performing minimization step: 3132. Total energy = 4268.0374 kcal/mol (4264.8688 without restraints) Performing minimization step: 3133. Total energy = 4267.2924 kcal/mol (4264.1256 without restraints) Performing minimization step: 3134. Total energy = 4266.5476 kcal/mol (4263.3827 without restraints) Performing minimization step: 3135. Total energy = 4265.8041 kcal/mol (4262.6410 without restraints) Performing minimization step: 3136. Total energy = 4265.0608 kcal/mol (4261.8995 without restraints) Performing minimization step: 3137. Total energy = 4264.3185 kcal/mol (4261.1592 without restraints) Performing minimization step: 3138. Total energy = 4263.5770 kcal/mol (4260.4196 without restraints) Performing minimization step: 3139. Total energy = 4262.8357 kcal/mol (4259.6801 without restraints) Performing minimization step: 3140. Total energy = 4262.0956 kcal/mol (4258.9419 without restraints) Performing minimization step: 3141. Total energy = 4261.3555 kcal/mol (4258.2036 without restraints) Performing minimization step: 3142. Total energy = 4260.6161 kcal/mol (4257.4662 without restraints) Performing minimization step: 3143. Total energy = 4259.8778 kcal/mol (4256.7294 without restraints) Performing minimization step: 3144. Total energy = 4259.1404 kcal/mol (4255.9942 without restraints) Performing minimization step: 3145. Total energy = 4258.4035 kcal/mol (4255.2590 without restraints) Performing minimization step: 3146. Total energy = 4257.6675 kcal/mol (4254.5249 without restraints) Performing minimization step: 3147. Total energy = 4256.9319 kcal/mol (4253.7912 without restraints) Performing minimization step: 3148. Total energy = 4256.1971 kcal/mol (4253.0583 without restraints) Performing minimization step: 3149. Total energy = 4255.4627 kcal/mol (4252.3257 without restraints) Performing minimization step: 3150. Total energy = 4254.7294 kcal/mol (4251.5942 without restraints) Performing minimization step: 3151. Total energy = 4253.9965 kcal/mol (4250.8632 without restraints) Performing minimization step: 3152. Total energy = 4253.2643 kcal/mol (4250.1328 without restraints) Performing minimization step: 3153. Total energy = 4252.5323 kcal/mol (4249.4026 without restraints) Performing minimization step: 3154. Total energy = 4251.8014 kcal/mol (4248.6735 without restraints) Performing minimization step: 3155. Total energy = 4251.0712 kcal/mol (4247.9452 without restraints) Performing minimization step: 3156. Total energy = 4250.3414 kcal/mol (4247.2173 without restraints) Performing minimization step: 3157. Total energy = 4249.6120 kcal/mol (4246.4898 without restraints) Performing minimization step: 3158. Total energy = 4248.8837 kcal/mol (4245.7632 without restraints) Performing minimization step: 3159. Total energy = 4248.1563 kcal/mol (4245.0376 without restraints) Performing minimization step: 3160. Total energy = 4247.4292 kcal/mol (4244.3125 without restraints) Performing minimization step: 3161. Total energy = 4246.7028 kcal/mol (4243.5877 without restraints) Performing minimization step: 3162. Total energy = 4245.9767 kcal/mol (4242.8636 without restraints) Performing minimization step: 3163. Total energy = 4245.2515 kcal/mol (4242.1402 without restraints) Performing minimization step: 3164. Total energy = 4244.5267 kcal/mol (4241.4172 without restraints) Performing minimization step: 3165. Total energy = 4243.8028 kcal/mol (4240.6951 without restraints) Performing minimization step: 3166. Total energy = 4243.0792 kcal/mol (4239.9732 without restraints) Performing minimization step: 3167. Total energy = 4242.3566 kcal/mol (4239.2525 without restraints) Performing minimization step: 3168. Total energy = 4241.6346 kcal/mol (4238.5324 without restraints) Performing minimization step: 3169. Total energy = 4240.9133 kcal/mol (4237.8129 without restraints) Performing minimization step: 3170. Total energy = 4240.1931 kcal/mol (4237.0945 without restraints) Performing minimization step: 3171. Total energy = 4239.4731 kcal/mol (4236.3763 without restraints) Performing minimization step: 3172. Total energy = 4238.7539 kcal/mol (4235.6589 without restraints) Performing minimization step: 3173. Total energy = 4238.0353 kcal/mol (4234.9421 without restraints) Performing minimization step: 3174. Total energy = 4237.3170 kcal/mol (4234.2256 without restraints) Performing minimization step: 3175. Total energy = 4236.5995 kcal/mol (4233.5100 without restraints) Performing minimization step: 3176. Total energy = 4235.8827 kcal/mol (4232.7949 without restraints) Performing minimization step: 3177. Total energy = 4235.1669 kcal/mol (4232.0809 without restraints) Performing minimization step: 3178. Total energy = 4234.4517 kcal/mol (4231.3676 without restraints) Performing minimization step: 3179. Total energy = 4233.7368 kcal/mol (4230.6544 without restraints) Performing minimization step: 3180. Total energy = 4233.0226 kcal/mol (4229.9421 without restraints) Performing minimization step: 3181. Total energy = 4232.3092 kcal/mol (4229.2304 without restraints) Performing minimization step: 3182. Total energy = 4231.5962 kcal/mol (4228.5191 without restraints) Performing minimization step: 3183. Total energy = 4230.8835 kcal/mol (4227.8082 without restraints) Performing minimization step: 3184. Total energy = 4230.1717 kcal/mol (4227.0983 without restraints) Performing minimization step: 3185. Total energy = 4229.4610 kcal/mol (4226.3894 without restraints) Performing minimization step: 3186. Total energy = 4228.7503 kcal/mol (4225.6805 without restraints) Performing minimization step: 3187. Total energy = 4228.0407 kcal/mol (4224.9727 without restraints) Performing minimization step: 3188. Total energy = 4227.3316 kcal/mol (4224.2654 without restraints) Performing minimization step: 3189. Total energy = 4226.6229 kcal/mol (4223.5585 without restraints) Performing minimization step: 3190. Total energy = 4225.9150 kcal/mol (4222.8524 without restraints) Performing minimization step: 3191. Total energy = 4225.2077 kcal/mol (4222.1468 without restraints) Performing minimization step: 3192. Total energy = 4224.5013 kcal/mol (4221.4422 without restraints) Performing minimization step: 3193. Total energy = 4223.7948 kcal/mol (4220.7374 without restraints) Performing minimization step: 3194. Total energy = 4223.0891 kcal/mol (4220.0335 without restraints) Performing minimization step: 3195. Total energy = 4222.3847 kcal/mol (4219.3309 without restraints) Performing minimization step: 3196. Total energy = 4221.6807 kcal/mol (4218.6288 without restraints) Performing minimization step: 3197. Total energy = 4220.9771 kcal/mol (4217.9268 without restraints) Performing minimization step: 3198. Total energy = 4220.2742 kcal/mol (4217.2257 without restraints) Performing minimization step: 3199. Total energy = 4219.5717 kcal/mol (4216.5250 without restraints) Performing minimization step: 3200. Total energy = 4218.8702 kcal/mol (4215.8253 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 4218.1690 kcal/mol (4215.1258 without restraints) Performing minimization step: 3202. Total energy = 4217.4684 kcal/mol (4214.4270 without restraints) Performing minimization step: 3203. Total energy = 4216.7685 kcal/mol (4213.7289 without restraints) Performing minimization step: 3204. Total energy = 4216.0694 kcal/mol (4213.0314 without restraints) Performing minimization step: 3205. Total energy = 4215.3707 kcal/mol (4212.3344 without restraints) Performing minimization step: 3206. Total energy = 4214.6724 kcal/mol (4211.6380 without restraints) Performing minimization step: 3207. Total energy = 4213.9746 kcal/mol (4210.9420 without restraints) Performing minimization step: 3208. Total energy = 4213.2778 kcal/mol (4210.2470 without restraints) Performing minimization step: 3209. Total energy = 4212.5822 kcal/mol (4209.5530 without restraints) Performing minimization step: 3210. Total energy = 4211.8872 kcal/mol (4208.8599 without restraints) Performing minimization step: 3211. Total energy = 4211.1925 kcal/mol (4208.1668 without restraints) Performing minimization step: 3212. Total energy = 4210.4981 kcal/mol (4207.4742 without restraints) Performing minimization step: 3213. Total energy = 4209.8043 kcal/mol (4206.7822 without restraints) Performing minimization step: 3214. Total energy = 4209.1110 kcal/mol (4206.0905 without restraints) Performing minimization step: 3215. Total energy = 4208.4181 kcal/mol (4205.3995 without restraints) Performing minimization step: 3216. Total energy = 4207.7258 kcal/mol (4204.7089 without restraints) Performing minimization step: 3217. Total energy = 4207.0345 kcal/mol (4204.0193 without restraints) Performing minimization step: 3218. Total energy = 4206.3436 kcal/mol (4203.3301 without restraints) Performing minimization step: 3219. Total energy = 4205.6533 kcal/mol (4202.6416 without restraints) Performing minimization step: 3220. Total energy = 4204.9636 kcal/mol (4201.9536 without restraints) Performing minimization step: 3221. Total energy = 4204.2751 kcal/mol (4201.2668 without restraints) Performing minimization step: 3222. Total energy = 4203.5866 kcal/mol (4200.5801 without restraints) Performing minimization step: 3223. Total energy = 4202.8990 kcal/mol (4199.8942 without restraints) Performing minimization step: 3224. Total energy = 4202.2119 kcal/mol (4199.2089 without restraints) Performing minimization step: 3225. Total energy = 4201.5250 kcal/mol (4198.5237 without restraints) Performing minimization step: 3226. Total energy = 4200.8392 kcal/mol (4197.8396 without restraints) Performing minimization step: 3227. Total energy = 4200.1535 kcal/mol (4197.1559 without restraints) Performing minimization step: 3228. Total energy = 4199.4693 kcal/mol (4196.4732 without restraints) Performing minimization step: 3229. Total energy = 4198.7850 kcal/mol (4195.7906 without restraints) Performing minimization step: 3230. Total energy = 4198.1009 kcal/mol (4195.1082 without restraints) Performing minimization step: 3231. Total energy = 4197.4178 kcal/mol (4194.4268 without restraints) Performing minimization step: 3232. Total energy = 4196.7352 kcal/mol (4193.7459 without restraints) Performing minimization step: 3233. Total energy = 4196.0532 kcal/mol (4193.0656 without restraints) Performing minimization step: 3234. Total energy = 4195.3714 kcal/mol (4192.3856 without restraints) Performing minimization step: 3235. Total energy = 4194.6909 kcal/mol (4191.7067 without restraints) Performing minimization step: 3236. Total energy = 4194.0106 kcal/mol (4191.0282 without restraints) Performing minimization step: 3237. Total energy = 4193.3311 kcal/mol (4190.3505 without restraints) Performing minimization step: 3238. Total energy = 4192.6524 kcal/mol (4189.6735 without restraints) Performing minimization step: 3239. Total energy = 4191.9743 kcal/mol (4188.9970 without restraints) Performing minimization step: 3240. Total energy = 4191.2966 kcal/mol (4188.3209 without restraints) Performing minimization step: 3241. Total energy = 4190.6200 kcal/mol (4187.6461 without restraints) Performing minimization step: 3242. Total energy = 4189.9436 kcal/mol (4186.9716 without restraints) Performing minimization step: 3243. Total energy = 4189.2678 kcal/mol (4186.2972 without restraints) Performing minimization step: 3244. Total energy = 4188.5923 kcal/mol (4185.6234 without restraints) Performing minimization step: 3245. Total energy = 4187.9178 kcal/mol (4184.9506 without restraints) Performing minimization step: 3246. Total energy = 4187.2435 kcal/mol (4184.2780 without restraints) Performing minimization step: 3247. Total energy = 4186.5698 kcal/mol (4183.6060 without restraints) Performing minimization step: 3248. Total energy = 4185.8973 kcal/mol (4182.9353 without restraints) Performing minimization step: 3249. Total energy = 4185.2247 kcal/mol (4182.2643 without restraints) Performing minimization step: 3250. Total energy = 4184.5529 kcal/mol (4181.5942 without restraints) Performing minimization step: 3251. Total energy = 4183.8815 kcal/mol (4180.9244 without restraints) Performing minimization step: 3252. Total energy = 4183.2106 kcal/mol (4180.2553 without restraints) Performing minimization step: 3253. Total energy = 4182.5401 kcal/mol (4179.5865 without restraints) Performing minimization step: 3254. Total energy = 4181.8705 kcal/mol (4178.9186 without restraints) Performing minimization step: 3255. Total energy = 4181.2016 kcal/mol (4178.2514 without restraints) Performing minimization step: 3256. Total energy = 4180.5333 kcal/mol (4177.5848 without restraints) Performing minimization step: 3257. Total energy = 4179.8655 kcal/mol (4176.9185 without restraints) Performing minimization step: 3258. Total energy = 4179.1976 kcal/mol (4176.2524 without restraints) Performing minimization step: 3259. Total energy = 4178.5308 kcal/mol (4175.5873 without restraints) Performing minimization step: 3260. Total energy = 4177.8650 kcal/mol (4174.9230 without restraints) Performing minimization step: 3261. Total energy = 4177.1988 kcal/mol (4174.2585 without restraints) Performing minimization step: 3262. Total energy = 4176.5341 kcal/mol (4173.5957 without restraints) Performing minimization step: 3263. Total energy = 4175.8701 kcal/mol (4172.9332 without restraints) Performing minimization step: 3264. Total energy = 4175.2058 kcal/mol (4172.2706 without restraints) Performing minimization step: 3265. Total energy = 4174.5429 kcal/mol (4171.6095 without restraints) Performing minimization step: 3266. Total energy = 4173.8805 kcal/mol (4170.9485 without restraints) Performing minimization step: 3267. Total energy = 4173.2181 kcal/mol (4170.2878 without restraints) Performing minimization step: 3268. Total energy = 4172.5563 kcal/mol (4169.6277 without restraints) Performing minimization step: 3269. Total energy = 4171.8955 kcal/mol (4168.9685 without restraints) Performing minimization step: 3270. Total energy = 4171.2349 kcal/mol (4168.3095 without restraints) Performing minimization step: 3271. Total energy = 4170.5752 kcal/mol (4167.6515 without restraints) Performing minimization step: 3272. Total energy = 4169.9156 kcal/mol (4166.9936 without restraints) Performing minimization step: 3273. Total energy = 4169.2567 kcal/mol (4166.3363 without restraints) Performing minimization step: 3274. Total energy = 4168.5983 kcal/mol (4165.6796 without restraints) Performing minimization step: 3275. Total energy = 4167.9406 kcal/mol (4165.0235 without restraints) Performing minimization step: 3276. Total energy = 4167.2835 kcal/mol (4164.3681 without restraints) Performing minimization step: 3277. Total energy = 4166.6267 kcal/mol (4163.7130 without restraints) Performing minimization step: 3278. Total energy = 4165.9708 kcal/mol (4163.0586 without restraints) Performing minimization step: 3279. Total energy = 4165.3151 kcal/mol (4162.4046 without restraints) Performing minimization step: 3280. Total energy = 4164.6601 kcal/mol (4161.7512 without restraints) Performing minimization step: 3281. Total energy = 4164.0055 kcal/mol (4161.0983 without restraints) Performing minimization step: 3282. Total energy = 4163.3516 kcal/mol (4160.4460 without restraints) Performing minimization step: 3283. Total energy = 4162.6985 kcal/mol (4159.7945 without restraints) Performing minimization step: 3284. Total energy = 4162.0459 kcal/mol (4159.1436 without restraints) Performing minimization step: 3285. Total energy = 4161.3937 kcal/mol (4158.4930 without restraints) Performing minimization step: 3286. Total energy = 4160.7418 kcal/mol (4157.8427 without restraints) Performing minimization step: 3287. Total energy = 4160.0907 kcal/mol (4157.1933 without restraints) Performing minimization step: 3288. Total energy = 4159.4400 kcal/mol (4156.5442 without restraints) Performing minimization step: 3289. Total energy = 4158.7897 kcal/mol (4155.8955 without restraints) Performing minimization step: 3290. Total energy = 4158.1395 kcal/mol (4155.2468 without restraints) Performing minimization step: 3291. Total energy = 4157.4904 kcal/mol (4154.5995 without restraints) Performing minimization step: 3292. Total energy = 4156.8417 kcal/mol (4153.9523 without restraints) Performing minimization step: 3293. Total energy = 4156.1935 kcal/mol (4153.3058 without restraints) Performing minimization step: 3294. Total energy = 4155.5467 kcal/mol (4152.6609 without restraints) Performing minimization step: 3295. Total energy = 4154.9002 kcal/mol (4152.0157 without restraints) Performing minimization step: 3296. Total energy = 4154.2539 kcal/mol (4151.3711 without restraints) Performing minimization step: 3297. Total energy = 4153.6084 kcal/mol (4150.7273 without restraints) Performing minimization step: 3298. Total energy = 4152.9633 kcal/mol (4150.0837 without restraints) Performing minimization step: 3299. Total energy = 4152.3188 kcal/mol (4149.4408 without restraints) Performing minimization step: 3300. Total energy = 4151.6747 kcal/mol (4148.7982 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 4151.0310 kcal/mol (4148.1562 without restraints) Performing minimization step: 3302. Total energy = 4150.3881 kcal/mol (4147.5150 without restraints) Performing minimization step: 3303. Total energy = 4149.7458 kcal/mol (4146.8742 without restraints) Performing minimization step: 3304. Total energy = 4149.1039 kcal/mol (4146.2338 without restraints) Performing minimization step: 3305. Total energy = 4148.4628 kcal/mol (4145.5944 without restraints) Performing minimization step: 3306. Total energy = 4147.8228 kcal/mol (4144.9562 without restraints) Performing minimization step: 3307. Total energy = 4147.1827 kcal/mol (4144.3175 without restraints) Performing minimization step: 3308. Total energy = 4146.5432 kcal/mol (4143.6796 without restraints) Performing minimization step: 3309. Total energy = 4145.9040 kcal/mol (4143.0419 without restraints) Performing minimization step: 3310. Total energy = 4145.2654 kcal/mol (4142.4050 without restraints) Performing minimization step: 3311. Total energy = 4144.6282 kcal/mol (4141.7693 without restraints) Performing minimization step: 3312. Total energy = 4143.9903 kcal/mol (4141.1332 without restraints) Performing minimization step: 3313. Total energy = 4143.3532 kcal/mol (4140.4976 without restraints) Performing minimization step: 3314. Total energy = 4142.7165 kcal/mol (4139.8625 without restraints) Performing minimization step: 3315. Total energy = 4142.0805 kcal/mol (4139.2280 without restraints) Performing minimization step: 3316. Total energy = 4141.4454 kcal/mol (4138.5945 without restraints) Performing minimization step: 3317. Total energy = 4140.8107 kcal/mol (4137.9614 without restraints) Performing minimization step: 3318. Total energy = 4140.1759 kcal/mol (4137.3281 without restraints) Performing minimization step: 3319. Total energy = 4139.5418 kcal/mol (4136.6956 without restraints) Performing minimization step: 3320. Total energy = 4138.9081 kcal/mol (4136.0635 without restraints) Performing minimization step: 3321. Total energy = 4138.2754 kcal/mol (4135.4326 without restraints) Performing minimization step: 3322. Total energy = 4137.6427 kcal/mol (4134.8013 without restraints) Performing minimization step: 3323. Total energy = 4137.0109 kcal/mol (4134.1710 without restraints) Performing minimization step: 3324. Total energy = 4136.3799 kcal/mol (4133.5416 without restraints) Performing minimization step: 3325. Total energy = 4135.7492 kcal/mol (4132.9125 without restraints) Performing minimization step: 3326. Total energy = 4135.1188 kcal/mol (4132.2837 without restraints) Performing minimization step: 3327. Total energy = 4134.4890 kcal/mol (4131.6554 without restraints) Performing minimization step: 3328. Total energy = 4133.8600 kcal/mol (4131.0281 without restraints) Performing minimization step: 3329. Total energy = 4133.2314 kcal/mol (4130.4009 without restraints) Performing minimization step: 3330. Total energy = 4132.6030 kcal/mol (4129.7741 without restraints) Performing minimization step: 3331. Total energy = 4131.9752 kcal/mol (4129.1479 without restraints) Performing minimization step: 3332. Total energy = 4131.3486 kcal/mol (4128.5228 without restraints) Performing minimization step: 3333. Total energy = 4130.7220 kcal/mol (4127.8977 without restraints) Performing minimization step: 3334. Total energy = 4130.0958 kcal/mol (4127.2731 without restraints) Performing minimization step: 3335. Total energy = 4129.4702 kcal/mol (4126.6491 without restraints) Performing minimization step: 3336. Total energy = 4128.8451 kcal/mol (4126.0255 without restraints) Performing minimization step: 3337. Total energy = 4128.2205 kcal/mol (4125.4025 without restraints) Performing minimization step: 3338. Total energy = 4127.5962 kcal/mol (4124.7797 without restraints) Performing minimization step: 3339. Total energy = 4126.9726 kcal/mol (4124.1577 without restraints) Performing minimization step: 3340. Total energy = 4126.3495 kcal/mol (4123.5361 without restraints) Performing minimization step: 3341. Total energy = 4125.7269 kcal/mol (4122.9151 without restraints) Performing minimization step: 3342. Total energy = 4125.1050 kcal/mol (4122.2947 without restraints) Performing minimization step: 3343. Total energy = 4124.4834 kcal/mol (4121.6747 without restraints) Performing minimization step: 3344. Total energy = 4123.8627 kcal/mol (4121.0555 without restraints) Performing minimization step: 3345. Total energy = 4123.2420 kcal/mol (4120.4364 without restraints) Performing minimization step: 3346. Total energy = 4122.6223 kcal/mol (4119.8182 without restraints) Performing minimization step: 3347. Total energy = 4122.0028 kcal/mol (4119.2002 without restraints) Performing minimization step: 3348. Total energy = 4121.3842 kcal/mol (4118.5831 without restraints) Performing minimization step: 3349. Total energy = 4120.7663 kcal/mol (4117.9668 without restraints) Performing minimization step: 3350. Total energy = 4120.1485 kcal/mol (4117.3506 without restraints) Performing minimization step: 3351. Total energy = 4119.5312 kcal/mol (4116.7348 without restraints) Performing minimization step: 3352. Total energy = 4118.9144 kcal/mol (4116.1195 without restraints) Performing minimization step: 3353. Total energy = 4118.2977 kcal/mol (4115.5042 without restraints) Performing minimization step: 3354. Total energy = 4117.6819 kcal/mol (4114.8900 without restraints) Performing minimization step: 3355. Total energy = 4117.0668 kcal/mol (4114.2763 without restraints) Performing minimization step: 3356. Total energy = 4116.4518 kcal/mol (4113.6630 without restraints) Performing minimization step: 3357. Total energy = 4115.8375 kcal/mol (4113.0502 without restraints) Performing minimization step: 3358. Total energy = 4115.2235 kcal/mol (4112.4377 without restraints) Performing minimization step: 3359. Total energy = 4114.6099 kcal/mol (4111.8256 without restraints) Performing minimization step: 3360. Total energy = 4113.9969 kcal/mol (4111.2142 without restraints) Performing minimization step: 3361. Total energy = 4113.3846 kcal/mol (4110.6034 without restraints) Performing minimization step: 3362. Total energy = 4112.7726 kcal/mol (4109.9928 without restraints) Performing minimization step: 3363. Total energy = 4112.1615 kcal/mol (4109.3833 without restraints) Performing minimization step: 3364. Total energy = 4111.5506 kcal/mol (4108.7739 without restraints) Performing minimization step: 3365. Total energy = 4110.9401 kcal/mol (4108.1649 without restraints) Performing minimization step: 3366. Total energy = 4110.3299 kcal/mol (4107.5560 without restraints) Performing minimization step: 3367. Total energy = 4109.7210 kcal/mol (4106.9489 without restraints) Performing minimization step: 3368. Total energy = 4109.1124 kcal/mol (4106.3417 without restraints) Performing minimization step: 3369. Total energy = 4108.5038 kcal/mol (4105.7346 without restraints) Performing minimization step: 3370. Total energy = 4107.8956 kcal/mol (4105.1279 without restraints) Performing minimization step: 3371. Total energy = 4107.2881 kcal/mol (4104.5218 without restraints) Performing minimization step: 3372. Total energy = 4106.6812 kcal/mol (4103.9165 without restraints) Performing minimization step: 3373. Total energy = 4106.0752 kcal/mol (4103.3120 without restraints) Performing minimization step: 3374. Total energy = 4105.4689 kcal/mol (4102.7072 without restraints) Performing minimization step: 3375. Total energy = 4104.8633 kcal/mol (4102.1031 without restraints) Performing minimization step: 3376. Total energy = 4104.2577 kcal/mol (4101.4990 without restraints) Performing minimization step: 3377. Total energy = 4103.6533 kcal/mol (4100.8961 without restraints) Performing minimization step: 3378. Total energy = 4103.0493 kcal/mol (4100.2936 without restraints) Performing minimization step: 3379. Total energy = 4102.4458 kcal/mol (4099.6915 without restraints) Performing minimization step: 3380. Total energy = 4101.8430 kcal/mol (4099.0902 without restraints) Performing minimization step: 3381. Total energy = 4101.2405 kcal/mol (4098.4892 without restraints) Performing minimization step: 3382. Total energy = 4100.6382 kcal/mol (4097.8883 without restraints) Performing minimization step: 3383. Total energy = 4100.0365 kcal/mol (4097.2882 without restraints) Performing minimization step: 3384. Total energy = 4099.4355 kcal/mol (4096.6887 without restraints) Performing minimization step: 3385. Total energy = 4098.8349 kcal/mol (4096.0897 without restraints) Performing minimization step: 3386. Total energy = 4098.2349 kcal/mol (4095.4911 without restraints) Performing minimization step: 3387. Total energy = 4097.6352 kcal/mol (4094.8927 without restraints) Performing minimization step: 3388. Total energy = 4097.0360 kcal/mol (4094.2951 without restraints) Performing minimization step: 3389. Total energy = 4096.4375 kcal/mol (4093.6981 without restraints) Performing minimization step: 3390. Total energy = 4095.8394 kcal/mol (4093.1014 without restraints) Performing minimization step: 3391. Total energy = 4095.2416 kcal/mol (4092.5051 without restraints) Performing minimization step: 3392. Total energy = 4094.6446 kcal/mol (4091.9096 without restraints) Performing minimization step: 3393. Total energy = 4094.0481 kcal/mol (4091.3146 without restraints) Performing minimization step: 3394. Total energy = 4093.4518 kcal/mol (4090.7197 without restraints) Performing minimization step: 3395. Total energy = 4092.8561 kcal/mol (4090.1255 without restraints) Performing minimization step: 3396. Total energy = 4092.2611 kcal/mol (4089.5319 without restraints) Performing minimization step: 3397. Total energy = 4091.6663 kcal/mol (4088.9386 without restraints) Performing minimization step: 3398. Total energy = 4091.0717 kcal/mol (4088.3454 without restraints) Performing minimization step: 3399. Total energy = 4090.4779 kcal/mol (4087.7532 without restraints) Performing minimization step: 3400. Total energy = 4089.8845 kcal/mol (4087.1611 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 4089.2917 kcal/mol (4086.5698 without restraints) Performing minimization step: 3402. Total energy = 4088.6993 kcal/mol (4085.9788 without restraints) Performing minimization step: 3403. Total energy = 4088.1070 kcal/mol (4085.3880 without restraints) Performing minimization step: 3404. Total energy = 4087.5156 kcal/mol (4084.7981 without restraints) Performing minimization step: 3405. Total energy = 4086.9247 kcal/mol (4084.2089 without restraints) Performing minimization step: 3406. Total energy = 4086.3347 kcal/mol (4083.6199 without restraints) Performing minimization step: 3407. Total energy = 4085.7447 kcal/mol (4083.0315 without restraints) Performing minimization step: 3408. Total energy = 4085.1550 kcal/mol (4082.4432 without restraints) Performing minimization step: 3409. Total energy = 4084.5659 kcal/mol (4081.8556 without restraints) Performing minimization step: 3410. Total energy = 4083.9777 kcal/mol (4081.2690 without restraints) Performing minimization step: 3411. Total energy = 4083.3899 kcal/mol (4080.6825 without restraints) Performing minimization step: 3412. Total energy = 4082.8021 kcal/mol (4080.0962 without restraints) Performing minimization step: 3413. Total energy = 4082.2153 kcal/mol (4079.5107 without restraints) Performing minimization step: 3414. Total energy = 4081.6285 kcal/mol (4078.9255 without restraints) Performing minimization step: 3415. Total energy = 4081.0421 kcal/mol (4078.3404 without restraints) Performing minimization step: 3416. Total energy = 4080.4562 kcal/mol (4077.7559 without restraints) Performing minimization step: 3417. Total energy = 4079.8707 kcal/mol (4077.1718 without restraints) Performing minimization step: 3418. Total energy = 4079.2860 kcal/mol (4076.5886 without restraints) Performing minimization step: 3419. Total energy = 4078.7014 kcal/mol (4076.0055 without restraints) Performing minimization step: 3420. Total energy = 4078.1175 kcal/mol (4075.4230 without restraints) Performing minimization step: 3421. Total energy = 4077.5343 kcal/mol (4074.8413 without restraints) Performing minimization step: 3422. Total energy = 4076.9507 kcal/mol (4074.2589 without restraints) Performing minimization step: 3423. Total energy = 4076.3682 kcal/mol (4073.6780 without restraints) Performing minimization step: 3424. Total energy = 4075.7859 kcal/mol (4073.0971 without restraints) Performing minimization step: 3425. Total energy = 4075.2043 kcal/mol (4072.5168 without restraints) Performing minimization step: 3426. Total energy = 4074.6229 kcal/mol (4071.9370 without restraints) Performing minimization step: 3427. Total energy = 4074.0421 kcal/mol (4071.3575 without restraints) Performing minimization step: 3428. Total energy = 4073.4619 kcal/mol (4070.7785 without restraints) Performing minimization step: 3429. Total energy = 4072.8823 kcal/mol (4070.2006 without restraints) Performing minimization step: 3430. Total energy = 4072.3030 kcal/mol (4069.6227 without restraints) Performing minimization step: 3431. Total energy = 4071.7243 kcal/mol (4069.0455 without restraints) Performing minimization step: 3432. Total energy = 4071.1457 kcal/mol (4068.4683 without restraints) Performing minimization step: 3433. Total energy = 4070.5678 kcal/mol (4067.8919 without restraints) Performing minimization step: 3434. Total energy = 4069.9907 kcal/mol (4067.3160 without restraints) Performing minimization step: 3435. Total energy = 4069.4132 kcal/mol (4066.7401 without restraints) Performing minimization step: 3436. Total energy = 4068.8368 kcal/mol (4066.1649 without restraints) Performing minimization step: 3437. Total energy = 4068.2605 kcal/mol (4065.5900 without restraints) Performing minimization step: 3438. Total energy = 4067.6848 kcal/mol (4065.0158 without restraints) Performing minimization step: 3439. Total energy = 4067.1096 kcal/mol (4064.4419 without restraints) Performing minimization step: 3440. Total energy = 4066.5346 kcal/mol (4063.8683 without restraints) Performing minimization step: 3441. Total energy = 4065.9601 kcal/mol (4063.2952 without restraints) Performing minimization step: 3442. Total energy = 4065.3864 kcal/mol (4062.7229 without restraints) Performing minimization step: 3443. Total energy = 4064.8126 kcal/mol (4062.1505 without restraints) Performing minimization step: 3444. Total energy = 4064.2402 kcal/mol (4061.5795 without restraints) Performing minimization step: 3445. Total energy = 4063.6679 kcal/mol (4061.0088 without restraints) Performing minimization step: 3446. Total energy = 4063.0958 kcal/mol (4060.4379 without restraints) Performing minimization step: 3447. Total energy = 4062.5241 kcal/mol (4059.8676 without restraints) Performing minimization step: 3448. Total energy = 4061.9525 kcal/mol (4059.2974 without restraints) Performing minimization step: 3449. Total energy = 4061.3818 kcal/mol (4058.7281 without restraints) Performing minimization step: 3450. Total energy = 4060.8118 kcal/mol (4058.1594 without restraints) Performing minimization step: 3451. Total energy = 4060.2419 kcal/mol (4057.5910 without restraints) Performing minimization step: 3452. Total energy = 4059.6725 kcal/mol (4057.0227 without restraints) Performing minimization step: 3453. Total energy = 4059.1029 kcal/mol (4056.4547 without restraints) Performing minimization step: 3454. Total energy = 4058.5346 kcal/mol (4055.8878 without restraints) Performing minimization step: 3455. Total energy = 4057.9666 kcal/mol (4055.3211 without restraints) Performing minimization step: 3456. Total energy = 4057.3993 kcal/mol (4054.7552 without restraints) Performing minimization step: 3457. Total energy = 4056.8319 kcal/mol (4054.1892 without restraints) Performing minimization step: 3458. Total energy = 4056.2651 kcal/mol (4053.6237 without restraints) Performing minimization step: 3459. Total energy = 4055.6990 kcal/mol (4053.0590 without restraints) Performing minimization step: 3460. Total energy = 4055.1332 kcal/mol (4052.4947 without restraints) Performing minimization step: 3461. Total energy = 4054.5684 kcal/mol (4051.9311 without restraints) Performing minimization step: 3462. Total energy = 4054.0033 kcal/mol (4051.3674 without restraints) Performing minimization step: 3463. Total energy = 4053.4392 kcal/mol (4050.8047 without restraints) Performing minimization step: 3464. Total energy = 4052.8755 kcal/mol (4050.2425 without restraints) Performing minimization step: 3465. Total energy = 4052.3125 kcal/mol (4049.6806 without restraints) Performing minimization step: 3466. Total energy = 4051.7491 kcal/mol (4049.1187 without restraints) Performing minimization step: 3467. Total energy = 4051.1865 kcal/mol (4048.5575 without restraints) Performing minimization step: 3468. Total energy = 4050.6247 kcal/mol (4047.9971 without restraints) Performing minimization step: 3469. Total energy = 4050.0628 kcal/mol (4047.4366 without restraints) Performing minimization step: 3470. Total energy = 4049.5011 kcal/mol (4046.8761 without restraints) Performing minimization step: 3471. Total energy = 4048.9400 kcal/mol (4046.3165 without restraints) Performing minimization step: 3472. Total energy = 4048.3800 kcal/mol (4045.7577 without restraints) Performing minimization step: 3473. Total energy = 4047.8195 kcal/mol (4045.1985 without restraints) Performing minimization step: 3474. Total energy = 4047.2599 kcal/mol (4044.6403 without restraints) Performing minimization step: 3475. Total energy = 4046.7005 kcal/mol (4044.0822 without restraints) Performing minimization step: 3476. Total energy = 4046.1418 kcal/mol (4043.5249 without restraints) Performing minimization step: 3477. Total energy = 4045.5833 kcal/mol (4042.9678 without restraints) Performing minimization step: 3478. Total energy = 4045.0253 kcal/mol (4042.4111 without restraints) Performing minimization step: 3479. Total energy = 4044.4684 kcal/mol (4041.8555 without restraints) Performing minimization step: 3480. Total energy = 4043.9108 kcal/mol (4041.2993 without restraints) Performing minimization step: 3481. Total energy = 4043.3539 kcal/mol (4040.7438 without restraints) Performing minimization step: 3482. Total energy = 4042.7977 kcal/mol (4040.1889 without restraints) Performing minimization step: 3483. Total energy = 4042.2415 kcal/mol (4039.6340 without restraints) Performing minimization step: 3484. Total energy = 4041.6864 kcal/mol (4039.0802 without restraints) Performing minimization step: 3485. Total energy = 4041.1314 kcal/mol (4038.5267 without restraints) Performing minimization step: 3486. Total energy = 4040.5775 kcal/mol (4037.9741 without restraints) Performing minimization step: 3487. Total energy = 4040.0229 kcal/mol (4037.4207 without restraints) Performing minimization step: 3488. Total energy = 4039.4692 kcal/mol (4036.8685 without restraints) Performing minimization step: 3489. Total energy = 4038.9160 kcal/mol (4036.3165 without restraints) Performing minimization step: 3490. Total energy = 4038.3630 kcal/mol (4035.7649 without restraints) Performing minimization step: 3491. Total energy = 4037.8104 kcal/mol (4035.2136 without restraints) Performing minimization step: 3492. Total energy = 4037.2584 kcal/mol (4034.6629 without restraints) Performing minimization step: 3493. Total energy = 4036.7072 kcal/mol (4034.1130 without restraints) Performing minimization step: 3494. Total energy = 4036.1556 kcal/mol (4033.5628 without restraints) Performing minimization step: 3495. Total energy = 4035.6049 kcal/mol (4033.0134 without restraints) Performing minimization step: 3496. Total energy = 4035.0543 kcal/mol (4032.4640 without restraints) Performing minimization step: 3497. Total energy = 4034.5040 kcal/mol (4031.9150 without restraints) Performing minimization step: 3498. Total energy = 4033.9546 kcal/mol (4031.3672 without restraints) Performing minimization step: 3499. Total energy = 4033.4057 kcal/mol (4030.8195 without restraints) Performing minimization step: 3500. Total energy = 4032.8571 kcal/mol (4030.2721 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 4032.3088 kcal/mol (4029.7252 without restraints) Performing minimization step: 3502. Total energy = 4031.7612 kcal/mol (4029.1789 without restraints) Performing minimization step: 3503. Total energy = 4031.2136 kcal/mol (4028.6327 without restraints) Performing minimization step: 3504. Total energy = 4030.6667 kcal/mol (4028.0870 without restraints) Performing minimization step: 3505. Total energy = 4030.1204 kcal/mol (4027.5421 without restraints) Performing minimization step: 3506. Total energy = 4029.5743 kcal/mol (4026.9972 without restraints) Performing minimization step: 3507. Total energy = 4029.0288 kcal/mol (4026.4532 without restraints) Performing minimization step: 3508. Total energy = 4028.4835 kcal/mol (4025.9090 without restraints) Performing minimization step: 3509. Total energy = 4027.9387 kcal/mol (4025.3655 without restraints) Performing minimization step: 3510. Total energy = 4027.3940 kcal/mol (4024.8222 without restraints) Performing minimization step: 3511. Total energy = 4026.8501 kcal/mol (4024.2795 without restraints) Performing minimization step: 3512. Total energy = 4026.3064 kcal/mol (4023.7371 without restraints) Performing minimization step: 3513. Total energy = 4025.7632 kcal/mol (4023.1954 without restraints) Performing minimization step: 3514. Total energy = 4025.2206 kcal/mol (4022.6539 without restraints) Performing minimization step: 3515. Total energy = 4024.6781 kcal/mol (4022.1127 without restraints) Performing minimization step: 3516. Total energy = 4024.1364 kcal/mol (4021.5723 without restraints) Performing minimization step: 3517. Total energy = 4023.5947 kcal/mol (4021.0319 without restraints) Performing minimization step: 3518. Total energy = 4023.0534 kcal/mol (4020.4918 without restraints) Performing minimization step: 3519. Total energy = 4022.5138 kcal/mol (4019.9535 without restraints) Performing minimization step: 3520. Total energy = 4021.9733 kcal/mol (4019.4144 without restraints) Performing minimization step: 3521. Total energy = 4021.4330 kcal/mol (4018.8754 without restraints) Performing minimization step: 3522. Total energy = 4020.8932 kcal/mol (4018.3368 without restraints) Performing minimization step: 3523. Total energy = 4020.3534 kcal/mol (4017.7983 without restraints) Performing minimization step: 3524. Total energy = 4019.8146 kcal/mol (4017.2608 without restraints) Performing minimization step: 3525. Total energy = 4019.2760 kcal/mol (4016.7234 without restraints) Performing minimization step: 3526. Total energy = 4018.7379 kcal/mol (4016.1867 without restraints) Performing minimization step: 3527. Total energy = 4018.2003 kcal/mol (4015.6503 without restraints) Performing minimization step: 3528. Total energy = 4017.6631 kcal/mol (4015.1144 without restraints) Performing minimization step: 3529. Total energy = 4017.1262 kcal/mol (4014.5788 without restraints) Performing minimization step: 3530. Total energy = 4016.5900 kcal/mol (4014.0439 without restraints) Performing minimization step: 3531. Total energy = 4016.0540 kcal/mol (4013.5093 without restraints) Performing minimization step: 3532. Total energy = 4015.5186 kcal/mol (4012.9750 without restraints) Performing minimization step: 3533. Total energy = 4014.9835 kcal/mol (4012.4412 without restraints) Performing minimization step: 3534. Total energy = 4014.4486 kcal/mol (4011.9075 without restraints) Performing minimization step: 3535. Total energy = 4013.9148 kcal/mol (4011.3751 without restraints) Performing minimization step: 3536. Total energy = 4013.3816 kcal/mol (4010.8430 without restraints) Performing minimization step: 3537. Total energy = 4012.8484 kcal/mol (4010.3112 without restraints) Performing minimization step: 3538. Total energy = 4012.3153 kcal/mol (4009.7793 without restraints) Performing minimization step: 3539. Total energy = 4011.7829 kcal/mol (4009.2483 without restraints) Performing minimization step: 3540. Total energy = 4011.2509 kcal/mol (4008.7174 without restraints) Performing minimization step: 3541. Total energy = 4010.7187 kcal/mol (4008.1864 without restraints) Performing minimization step: 3542. Total energy = 4010.1875 kcal/mol (4007.6567 without restraints) Performing minimization step: 3543. Total energy = 4009.6567 kcal/mol (4007.1270 without restraints) Performing minimization step: 3544. Total energy = 4009.1263 kcal/mol (4006.5979 without restraints) Performing minimization step: 3545. Total energy = 4008.5960 kcal/mol (4006.0688 without restraints) Performing minimization step: 3546. Total energy = 4008.0658 kcal/mol (4005.5399 without restraints) Performing minimization step: 3547. Total energy = 4007.5365 kcal/mol (4005.0117 without restraints) Performing minimization step: 3548. Total energy = 4007.0072 kcal/mol (4004.4838 without restraints) Performing minimization step: 3549. Total energy = 4006.4787 kcal/mol (4003.9565 without restraints) Performing minimization step: 3550. Total energy = 4005.9505 kcal/mol (4003.4296 without restraints) Performing minimization step: 3551. Total energy = 4005.4224 kcal/mol (4002.9028 without restraints) Performing minimization step: 3552. Total energy = 4004.8949 kcal/mol (4002.3765 without restraints) Performing minimization step: 3553. Total energy = 4004.3679 kcal/mol (4001.8508 without restraints) Performing minimization step: 3554. Total energy = 4003.8418 kcal/mol (4001.3259 without restraints) Performing minimization step: 3555. Total energy = 4003.3155 kcal/mol (4000.8008 without restraints) Performing minimization step: 3556. Total energy = 4002.7899 kcal/mol (4000.2766 without restraints) Performing minimization step: 3557. Total energy = 4002.2643 kcal/mol (3999.7521 without restraints) Performing minimization step: 3558. Total energy = 4001.7391 kcal/mol (3999.2280 without restraints) Performing minimization step: 3559. Total energy = 4001.2142 kcal/mol (3998.7045 without restraints) Performing minimization step: 3560. Total energy = 4000.6901 kcal/mol (3998.1815 without restraints) Performing minimization step: 3561. Total energy = 4000.1660 kcal/mol (3997.6587 without restraints) Performing minimization step: 3562. Total energy = 3999.6424 kcal/mol (3997.1364 without restraints) Performing minimization step: 3563. Total energy = 3999.1192 kcal/mol (3996.6143 without restraints) Performing minimization step: 3564. Total energy = 3998.5965 kcal/mol (3996.0929 without restraints) Performing minimization step: 3565. Total energy = 3998.0744 kcal/mol (3995.5721 without restraints) Performing minimization step: 3566. Total energy = 3997.5526 kcal/mol (3995.0515 without restraints) Performing minimization step: 3567. Total energy = 3997.0310 kcal/mol (3994.5312 without restraints) Performing minimization step: 3568. Total energy = 3996.5100 kcal/mol (3994.0113 without restraints) Performing minimization step: 3569. Total energy = 3995.9890 kcal/mol (3993.4914 without restraints) Performing minimization step: 3570. Total energy = 3995.4686 kcal/mol (3992.9724 without restraints) Performing minimization step: 3571. Total energy = 3994.9485 kcal/mol (3992.4535 without restraints) Performing minimization step: 3572. Total energy = 3994.4289 kcal/mol (3991.9351 without restraints) Performing minimization step: 3573. Total energy = 3993.9098 kcal/mol (3991.4172 without restraints) Performing minimization step: 3574. Total energy = 3993.3911 kcal/mol (3990.8999 without restraints) Performing minimization step: 3575. Total energy = 3992.8726 kcal/mol (3990.3825 without restraints) Performing minimization step: 3576. Total energy = 3992.3547 kcal/mol (3989.8658 without restraints) Performing minimization step: 3577. Total energy = 3991.8370 kcal/mol (3989.3493 without restraints) Performing minimization step: 3578. Total energy = 3991.3197 kcal/mol (3988.8333 without restraints) Performing minimization step: 3579. Total energy = 3990.8029 kcal/mol (3988.3175 without restraints) Performing minimization step: 3580. Total energy = 3990.2863 kcal/mol (3987.8022 without restraints) Performing minimization step: 3581. Total energy = 3989.7702 kcal/mol (3987.2873 without restraints) Performing minimization step: 3582. Total energy = 3989.2545 kcal/mol (3986.7728 without restraints) Performing minimization step: 3583. Total energy = 3988.7394 kcal/mol (3986.2590 without restraints) Performing minimization step: 3584. Total energy = 3988.2242 kcal/mol (3985.7449 without restraints) Performing minimization step: 3585. Total energy = 3987.7097 kcal/mol (3985.2318 without restraints) Performing minimization step: 3586. Total energy = 3987.1955 kcal/mol (3984.7187 without restraints) Performing minimization step: 3587. Total energy = 3986.6816 kcal/mol (3984.2060 without restraints) Performing minimization step: 3588. Total energy = 3986.1681 kcal/mol (3983.6936 without restraints) Performing minimization step: 3589. Total energy = 3985.6549 kcal/mol (3983.1817 without restraints) Performing minimization step: 3590. Total energy = 3985.1424 kcal/mol (3982.6703 without restraints) Performing minimization step: 3591. Total energy = 3984.6301 kcal/mol (3982.1593 without restraints) Performing minimization step: 3592. Total energy = 3984.1181 kcal/mol (3981.6484 without restraints) Performing minimization step: 3593. Total energy = 3983.6065 kcal/mol (3981.1380 without restraints) Performing minimization step: 3594. Total energy = 3983.0957 kcal/mol (3980.6285 without restraints) Performing minimization step: 3595. Total energy = 3982.5850 kcal/mol (3980.1190 without restraints) Performing minimization step: 3596. Total energy = 3982.0746 kcal/mol (3979.6097 without restraints) Performing minimization step: 3597. Total energy = 3981.5647 kcal/mol (3979.1010 without restraints) Performing minimization step: 3598. Total energy = 3981.0551 kcal/mol (3978.5926 without restraints) Performing minimization step: 3599. Total energy = 3980.5460 kcal/mol (3978.0846 without restraints) Performing minimization step: 3600. Total energy = 3980.0365 kcal/mol (3977.5764 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 3979.5289 kcal/mol (3977.0701 without restraints) Performing minimization step: 3602. Total energy = 3979.0211 kcal/mol (3976.5633 without restraints) Performing minimization step: 3603. Total energy = 3978.5133 kcal/mol (3976.0567 without restraints) Performing minimization step: 3604. Total energy = 3978.0062 kcal/mol (3975.5508 without restraints) Performing minimization step: 3605. Total energy = 3977.4990 kcal/mol (3975.0448 without restraints) Performing minimization step: 3606. Total energy = 3976.9920 kcal/mol (3974.5390 without restraints) Performing minimization step: 3607. Total energy = 3976.4858 kcal/mol (3974.0339 without restraints) Performing minimization step: 3608. Total energy = 3975.9798 kcal/mol (3973.5291 without restraints) Performing minimization step: 3609. Total energy = 3975.4742 kcal/mol (3973.0247 without restraints) Performing minimization step: 3610. Total energy = 3974.9691 kcal/mol (3972.5208 without restraints) Performing minimization step: 3611. Total energy = 3974.4640 kcal/mol (3972.0166 without restraints) Performing minimization step: 3612. Total energy = 3973.9594 kcal/mol (3971.5135 without restraints) Performing minimization step: 3613. Total energy = 3973.4554 kcal/mol (3971.0105 without restraints) Performing minimization step: 3614. Total energy = 3972.9516 kcal/mol (3970.5079 without restraints) Performing minimization step: 3615. Total energy = 3972.4484 kcal/mol (3970.0059 without restraints) Performing minimization step: 3616. Total energy = 3971.9454 kcal/mol (3969.5041 without restraints) Performing minimization step: 3617. Total energy = 3971.4430 kcal/mol (3969.0028 without restraints) Performing minimization step: 3618. Total energy = 3970.9406 kcal/mol (3968.5016 without restraints) Performing minimization step: 3619. Total energy = 3970.4388 kcal/mol (3968.0010 without restraints) Performing minimization step: 3620. Total energy = 3969.9376 kcal/mol (3967.5009 without restraints) Performing minimization step: 3621. Total energy = 3969.4364 kcal/mol (3967.0008 without restraints) Performing minimization step: 3622. Total energy = 3968.9358 kcal/mol (3966.5015 without restraints) Performing minimization step: 3623. Total energy = 3968.4354 kcal/mol (3966.0022 without restraints) Performing minimization step: 3624. Total energy = 3967.9357 kcal/mol (3965.5036 without restraints) Performing minimization step: 3625. Total energy = 3967.4362 kcal/mol (3965.0053 without restraints) Performing minimization step: 3626. Total energy = 3966.9370 kcal/mol (3964.5072 without restraints) Performing minimization step: 3627. Total energy = 3966.4384 kcal/mol (3964.0098 without restraints) Performing minimization step: 3628. Total energy = 3965.9398 kcal/mol (3963.5124 without restraints) Performing minimization step: 3629. Total energy = 3965.4417 kcal/mol (3963.0154 without restraints) Performing minimization step: 3630. Total energy = 3964.9438 kcal/mol (3962.5187 without restraints) Performing minimization step: 3631. Total energy = 3964.4468 kcal/mol (3962.0228 without restraints) Performing minimization step: 3632. Total energy = 3963.9498 kcal/mol (3961.5269 without restraints) Performing minimization step: 3633. Total energy = 3963.4530 kcal/mol (3961.0311 without restraints) Performing minimization step: 3634. Total energy = 3962.9568 kcal/mol (3960.5362 without restraints) Performing minimization step: 3635. Total energy = 3962.4611 kcal/mol (3960.0417 without restraints) Performing minimization step: 3636. Total energy = 3961.9653 kcal/mol (3959.5471 without restraints) Performing minimization step: 3637. Total energy = 3961.4702 kcal/mol (3959.0530 without restraints) Performing minimization step: 3638. Total energy = 3960.9752 kcal/mol (3958.5592 without restraints) Performing minimization step: 3639. Total energy = 3960.4812 kcal/mol (3958.0664 without restraints) Performing minimization step: 3640. Total energy = 3959.9870 kcal/mol (3957.5733 without restraints) Performing minimization step: 3641. Total energy = 3959.4932 kcal/mol (3957.0806 without restraints) Performing minimization step: 3642. Total energy = 3959.0000 kcal/mol (3956.5887 without restraints) Performing minimization step: 3643. Total energy = 3958.5070 kcal/mol (3956.0966 without restraints) Performing minimization step: 3644. Total energy = 3958.0143 kcal/mol (3955.6052 without restraints) Performing minimization step: 3645. Total energy = 3957.5220 kcal/mol (3955.1141 without restraints) Performing minimization step: 3646. Total energy = 3957.0300 kcal/mol (3954.6231 without restraints) Performing minimization step: 3647. Total energy = 3956.5390 kcal/mol (3954.1332 without restraints) Performing minimization step: 3648. Total energy = 3956.0481 kcal/mol (3953.6434 without restraints) Performing minimization step: 3649. Total energy = 3955.5570 kcal/mol (3953.1534 without restraints) Performing minimization step: 3650. Total energy = 3955.0663 kcal/mol (3952.6638 without restraints) Performing minimization step: 3651. Total energy = 3954.5760 kcal/mol (3952.1747 without restraints) Performing minimization step: 3652. Total energy = 3954.0862 kcal/mol (3951.6860 without restraints) Performing minimization step: 3653. Total energy = 3953.5966 kcal/mol (3951.1976 without restraints) Performing minimization step: 3654. Total energy = 3953.1073 kcal/mol (3950.7093 without restraints) Performing minimization step: 3655. Total energy = 3952.6184 kcal/mol (3950.2217 without restraints) Performing minimization step: 3656. Total energy = 3952.1298 kcal/mol (3949.7341 without restraints) Performing minimization step: 3657. Total energy = 3951.6412 kcal/mol (3949.2466 without restraints) Performing minimization step: 3658. Total energy = 3951.1533 kcal/mol (3948.7598 without restraints) Performing minimization step: 3659. Total energy = 3950.6659 kcal/mol (3948.2735 without restraints) Performing minimization step: 3660. Total energy = 3950.1790 kcal/mol (3947.7878 without restraints) Performing minimization step: 3661. Total energy = 3949.6922 kcal/mol (3947.3021 without restraints) Performing minimization step: 3662. Total energy = 3949.2061 kcal/mol (3946.8171 without restraints) Performing minimization step: 3663. Total energy = 3948.7201 kcal/mol (3946.3322 without restraints) Performing minimization step: 3664. Total energy = 3948.2348 kcal/mol (3945.8480 without restraints) Performing minimization step: 3665. Total energy = 3947.7497 kcal/mol (3945.3640 without restraints) Performing minimization step: 3666. Total energy = 3947.2648 kcal/mol (3944.8801 without restraints) Performing minimization step: 3667. Total energy = 3946.7800 kcal/mol (3944.3965 without restraints) Performing minimization step: 3668. Total energy = 3946.2953 kcal/mol (3943.9129 without restraints) Performing minimization step: 3669. Total energy = 3945.8115 kcal/mol (3943.4303 without restraints) Performing minimization step: 3670. Total energy = 3945.3278 kcal/mol (3942.9474 without restraints) Performing minimization step: 3671. Total energy = 3944.8443 kcal/mol (3942.4652 without restraints) Performing minimization step: 3672. Total energy = 3944.3619 kcal/mol (3941.9840 without restraints) Performing minimization step: 3673. Total energy = 3943.8794 kcal/mol (3941.5025 without restraints) Performing minimization step: 3674. Total energy = 3943.3973 kcal/mol (3941.0216 without restraints) Performing minimization step: 3675. Total energy = 3942.9157 kcal/mol (3940.5412 without restraints) Performing minimization step: 3676. Total energy = 3942.4353 kcal/mol (3940.0617 without restraints) Performing minimization step: 3677. Total energy = 3941.9540 kcal/mol (3939.5815 without restraints) Performing minimization step: 3678. Total energy = 3941.4733 kcal/mol (3939.1020 without restraints) Performing minimization step: 3679. Total energy = 3940.9930 kcal/mol (3938.6228 without restraints) Performing minimization step: 3680. Total energy = 3940.5128 kcal/mol (3938.1435 without restraints) Performing minimization step: 3681. Total energy = 3940.0328 kcal/mol (3937.6646 without restraints) Performing minimization step: 3682. Total energy = 3939.5531 kcal/mol (3937.1861 without restraints) Performing minimization step: 3683. Total energy = 3939.0743 kcal/mol (3936.7084 without restraints) Performing minimization step: 3684. Total energy = 3938.5956 kcal/mol (3936.2307 without restraints) Performing minimization step: 3685. Total energy = 3938.1171 kcal/mol (3935.7534 without restraints) Performing minimization step: 3686. Total energy = 3937.6392 kcal/mol (3935.2766 without restraints) Performing minimization step: 3687. Total energy = 3937.1617 kcal/mol (3934.8001 without restraints) Performing minimization step: 3688. Total energy = 3936.6843 kcal/mol (3934.3238 without restraints) Performing minimization step: 3689. Total energy = 3936.2072 kcal/mol (3933.8478 without restraints) Performing minimization step: 3690. Total energy = 3935.7306 kcal/mol (3933.3724 without restraints) Performing minimization step: 3691. Total energy = 3935.2543 kcal/mol (3932.8971 without restraints) Performing minimization step: 3692. Total energy = 3934.7783 kcal/mol (3932.4222 without restraints) Performing minimization step: 3693. Total energy = 3934.3027 kcal/mol (3931.9477 without restraints) Performing minimization step: 3694. Total energy = 3933.8273 kcal/mol (3931.4733 without restraints) Performing minimization step: 3695. Total energy = 3933.3526 kcal/mol (3930.9997 without restraints) Performing minimization step: 3696. Total energy = 3932.8781 kcal/mol (3930.5263 without restraints) Performing minimization step: 3697. Total energy = 3932.4042 kcal/mol (3930.0535 without restraints) Performing minimization step: 3698. Total energy = 3931.9305 kcal/mol (3929.5807 without restraints) Performing minimization step: 3699. Total energy = 3931.4572 kcal/mol (3929.1086 without restraints) Performing minimization step: 3700. Total energy = 3930.9835 kcal/mol (3928.6359 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 3930.5101 kcal/mol (3928.1636 without restraints) Performing minimization step: 3702. Total energy = 3930.0376 kcal/mol (3927.6922 without restraints) Performing minimization step: 3703. Total energy = 3929.5654 kcal/mol (3927.2210 without restraints) Performing minimization step: 3704. Total energy = 3929.0935 kcal/mol (3926.7502 without restraints) Performing minimization step: 3705. Total energy = 3928.6219 kcal/mol (3926.2798 without restraints) Performing minimization step: 3706. Total energy = 3928.1507 kcal/mol (3925.8095 without restraints) Performing minimization step: 3707. Total energy = 3927.6800 kcal/mol (3925.3399 without restraints) Performing minimization step: 3708. Total energy = 3927.2100 kcal/mol (3924.8710 without restraints) Performing minimization step: 3709. Total energy = 3926.7403 kcal/mol (3924.4023 without restraints) Performing minimization step: 3710. Total energy = 3926.2708 kcal/mol (3923.9340 without restraints) Performing minimization step: 3711. Total energy = 3925.8017 kcal/mol (3923.4659 without restraints) Performing minimization step: 3712. Total energy = 3925.3331 kcal/mol (3922.9983 without restraints) Performing minimization step: 3713. Total energy = 3924.8641 kcal/mol (3922.5303 without restraints) Performing minimization step: 3714. Total energy = 3924.3962 kcal/mol (3922.0635 without restraints) Performing minimization step: 3715. Total energy = 3923.9285 kcal/mol (3921.5968 without restraints) Performing minimization step: 3716. Total energy = 3923.4606 kcal/mol (3921.1300 without restraints) Performing minimization step: 3717. Total energy = 3922.9932 kcal/mol (3920.6636 without restraints) Performing minimization step: 3718. Total energy = 3922.5261 kcal/mol (3920.1976 without restraints) Performing minimization step: 3719. Total energy = 3922.0598 kcal/mol (3919.7323 without restraints) Performing minimization step: 3720. Total energy = 3921.5934 kcal/mol (3919.2671 without restraints) Performing minimization step: 3721. Total energy = 3921.1276 kcal/mol (3918.8023 without restraints) Performing minimization step: 3722. Total energy = 3920.6625 kcal/mol (3918.3381 without restraints) Performing minimization step: 3723. Total energy = 3920.1967 kcal/mol (3917.8735 without restraints) Performing minimization step: 3724. Total energy = 3919.7314 kcal/mol (3917.4092 without restraints) Performing minimization step: 3725. Total energy = 3919.2670 kcal/mol (3916.9458 without restraints) Performing minimization step: 3726. Total energy = 3918.8020 kcal/mol (3916.4818 without restraints) Performing minimization step: 3727. Total energy = 3918.3371 kcal/mol (3916.0180 without restraints) Performing minimization step: 3728. Total energy = 3917.8731 kcal/mol (3915.5551 without restraints) Performing minimization step: 3729. Total energy = 3917.4095 kcal/mol (3915.0924 without restraints) Performing minimization step: 3730. Total energy = 3916.9453 kcal/mol (3914.6293 without restraints) Performing minimization step: 3731. Total energy = 3916.4826 kcal/mol (3914.1675 without restraints) Performing minimization step: 3732. Total energy = 3916.0198 kcal/mol (3913.7059 without restraints) Performing minimization step: 3733. Total energy = 3915.5577 kcal/mol (3913.2448 without restraints) Performing minimization step: 3734. Total energy = 3915.0963 kcal/mol (3912.7844 without restraints) Performing minimization step: 3735. Total energy = 3914.6350 kcal/mol (3912.3242 without restraints) Performing minimization step: 3736. Total energy = 3914.1734 kcal/mol (3911.8636 without restraints) Performing minimization step: 3737. Total energy = 3913.7129 kcal/mol (3911.4043 without restraints) Performing minimization step: 3738. Total energy = 3913.2524 kcal/mol (3910.9446 without restraints) Performing minimization step: 3739. Total energy = 3912.7925 kcal/mol (3910.4858 without restraints) Performing minimization step: 3740. Total energy = 3912.3331 kcal/mol (3910.0276 without restraints) Performing minimization step: 3741. Total energy = 3911.8738 kcal/mol (3909.5691 without restraints) Performing minimization step: 3742. Total energy = 3911.4145 kcal/mol (3909.1109 without restraints) Performing minimization step: 3743. Total energy = 3910.9561 kcal/mol (3908.6535 without restraints) Performing minimization step: 3744. Total energy = 3910.4978 kcal/mol (3908.1964 without restraints) Performing minimization step: 3745. Total energy = 3910.0397 kcal/mol (3907.7392 without restraints) Performing minimization step: 3746. Total energy = 3909.5814 kcal/mol (3907.2819 without restraints) Performing minimization step: 3747. Total energy = 3909.1237 kcal/mol (3906.8251 without restraints) Performing minimization step: 3748. Total energy = 3908.6660 kcal/mol (3906.3685 without restraints) Performing minimization step: 3749. Total energy = 3908.2092 kcal/mol (3905.9127 without restraints) Performing minimization step: 3750. Total energy = 3907.7524 kcal/mol (3905.4570 without restraints) Performing minimization step: 3751. Total energy = 3907.2960 kcal/mol (3905.0015 without restraints) Performing minimization step: 3752. Total energy = 3906.8396 kcal/mol (3904.5462 without restraints) Performing minimization step: 3753. Total energy = 3906.3838 kcal/mol (3904.0914 without restraints) Performing minimization step: 3754. Total energy = 3905.9289 kcal/mol (3903.6375 without restraints) Performing minimization step: 3755. Total energy = 3905.4737 kcal/mol (3903.1833 without restraints) Performing minimization step: 3756. Total energy = 3905.0189 kcal/mol (3902.7296 without restraints) Performing minimization step: 3757. Total energy = 3904.5648 kcal/mol (3902.2764 without restraints) Performing minimization step: 3758. Total energy = 3904.1109 kcal/mol (3901.8237 without restraints) Performing minimization step: 3759. Total energy = 3903.6579 kcal/mol (3901.3716 without restraints) Performing minimization step: 3760. Total energy = 3903.2040 kcal/mol (3900.9187 without restraints) Performing minimization step: 3761. Total energy = 3902.7510 kcal/mol (3900.4667 without restraints) Performing minimization step: 3762. Total energy = 3902.2983 kcal/mol (3900.0149 without restraints) Performing minimization step: 3763. Total energy = 3901.8457 kcal/mol (3899.5634 without restraints) Performing minimization step: 3764. Total energy = 3901.3934 kcal/mol (3899.1121 without restraints) Performing minimization step: 3765. Total energy = 3900.9421 kcal/mol (3898.6617 without restraints) Performing minimization step: 3766. Total energy = 3900.4906 kcal/mol (3898.2113 without restraints) Performing minimization step: 3767. Total energy = 3900.0394 kcal/mol (3897.7612 without restraints) Performing minimization step: 3768. Total energy = 3899.5884 kcal/mol (3897.3111 without restraints) Performing minimization step: 3769. Total energy = 3899.1381 kcal/mol (3896.8618 without restraints) Performing minimization step: 3770. Total energy = 3898.6877 kcal/mol (3896.4124 without restraints) Performing minimization step: 3771. Total energy = 3898.2376 kcal/mol (3895.9633 without restraints) Performing minimization step: 3772. Total energy = 3897.7883 kcal/mol (3895.5152 without restraints) Performing minimization step: 3773. Total energy = 3897.3389 kcal/mol (3895.0664 without restraints) Performing minimization step: 3774. Total energy = 3896.8901 kcal/mol (3894.6189 without restraints) Performing minimization step: 3775. Total energy = 3896.4411 kcal/mol (3894.1708 without restraints) Performing minimization step: 3776. Total energy = 3895.9928 kcal/mol (3893.7235 without restraints) Performing minimization step: 3777. Total energy = 3895.5447 kcal/mol (3893.2764 without restraints) Performing minimization step: 3778. Total energy = 3895.0969 kcal/mol (3892.8295 without restraints) Performing minimization step: 3779. Total energy = 3894.6497 kcal/mol (3892.3833 without restraints) Performing minimization step: 3780. Total energy = 3894.2026 kcal/mol (3891.9372 without restraints) Performing minimization step: 3781. Total energy = 3893.7560 kcal/mol (3891.4916 without restraints) Performing minimization step: 3782. Total energy = 3893.3096 kcal/mol (3891.0463 without restraints) Performing minimization step: 3783. Total energy = 3892.8636 kcal/mol (3890.6012 without restraints) Performing minimization step: 3784. Total energy = 3892.4181 kcal/mol (3890.1566 without restraints) Performing minimization step: 3785. Total energy = 3891.9724 kcal/mol (3889.7119 without restraints) Performing minimization step: 3786. Total energy = 3891.5270 kcal/mol (3889.2676 without restraints) Performing minimization step: 3787. Total energy = 3891.0823 kcal/mol (3888.8239 without restraints) Performing minimization step: 3788. Total energy = 3890.6378 kcal/mol (3888.3803 without restraints) Performing minimization step: 3789. Total energy = 3890.1937 kcal/mol (3887.9372 without restraints) Performing minimization step: 3790. Total energy = 3889.7498 kcal/mol (3887.4943 without restraints) Performing minimization step: 3791. Total energy = 3889.3060 kcal/mol (3887.0514 without restraints) Performing minimization step: 3792. Total energy = 3888.8629 kcal/mol (3886.6093 without restraints) Performing minimization step: 3793. Total energy = 3888.4201 kcal/mol (3886.1677 without restraints) Performing minimization step: 3794. Total energy = 3887.9777 kcal/mol (3885.7261 without restraints) Performing minimization step: 3795. Total energy = 3887.5354 kcal/mol (3885.2848 without restraints) Performing minimization step: 3796. Total energy = 3887.0940 kcal/mol (3884.8442 without restraints) Performing minimization step: 3797. Total energy = 3886.6519 kcal/mol (3884.4032 without restraints) Performing minimization step: 3798. Total energy = 3886.2102 kcal/mol (3883.9624 without restraints) Performing minimization step: 3799. Total energy = 3885.7691 kcal/mol (3883.5224 without restraints) Performing minimization step: 3800. Total energy = 3885.3286 kcal/mol (3883.0827 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 3884.8880 kcal/mol (3882.6431 without restraints) Performing minimization step: 3802. Total energy = 3884.4473 kcal/mol (3882.2034 without restraints) Performing minimization step: 3803. Total energy = 3884.0071 kcal/mol (3881.7642 without restraints) Performing minimization step: 3804. Total energy = 3883.5673 kcal/mol (3881.3253 without restraints) Performing minimization step: 3805. Total energy = 3883.1284 kcal/mol (3880.8874 without restraints) Performing minimization step: 3806. Total energy = 3882.6892 kcal/mol (3880.4492 without restraints) Performing minimization step: 3807. Total energy = 3882.2506 kcal/mol (3880.0115 without restraints) Performing minimization step: 3808. Total energy = 3881.8119 kcal/mol (3879.5738 without restraints) Performing minimization step: 3809. Total energy = 3881.3743 kcal/mol (3879.1371 without restraints) Performing minimization step: 3810. Total energy = 3880.9363 kcal/mol (3878.7002 without restraints) Performing minimization step: 3811. Total energy = 3880.4990 kcal/mol (3878.2638 without restraints) Performing minimization step: 3812. Total energy = 3880.0611 kcal/mol (3877.8268 without restraints) Performing minimization step: 3813. Total energy = 3879.6248 kcal/mol (3877.3916 without restraints) Performing minimization step: 3814. Total energy = 3879.1881 kcal/mol (3876.9557 without restraints) Performing minimization step: 3815. Total energy = 3878.7518 kcal/mol (3876.5204 without restraints) Performing minimization step: 3816. Total energy = 3878.3157 kcal/mol (3876.0852 without restraints) Performing minimization step: 3817. Total energy = 3877.8797 kcal/mol (3875.6502 without restraints) Performing minimization step: 3818. Total energy = 3877.4445 kcal/mol (3875.2160 without restraints) Performing minimization step: 3819. Total energy = 3877.0092 kcal/mol (3874.7816 without restraints) Performing minimization step: 3820. Total energy = 3876.5744 kcal/mol (3874.3477 without restraints) Performing minimization step: 3821. Total energy = 3876.1402 kcal/mol (3873.9145 without restraints) Performing minimization step: 3822. Total energy = 3875.7060 kcal/mol (3873.4813 without restraints) Performing minimization step: 3823. Total energy = 3875.2728 kcal/mol (3873.0491 without restraints) Performing minimization step: 3824. Total energy = 3874.8391 kcal/mol (3872.6164 without restraints) Performing minimization step: 3825. Total energy = 3874.4060 kcal/mol (3872.1841 without restraints) Performing minimization step: 3826. Total energy = 3873.9734 kcal/mol (3871.7524 without restraints) Performing minimization step: 3827. Total energy = 3873.5407 kcal/mol (3871.3207 without restraints) Performing minimization step: 3828. Total energy = 3873.1080 kcal/mol (3870.8890 without restraints) Performing minimization step: 3829. Total energy = 3872.6758 kcal/mol (3870.4578 without restraints) Performing minimization step: 3830. Total energy = 3872.2440 kcal/mol (3870.0269 without restraints) Performing minimization step: 3831. Total energy = 3871.8127 kcal/mol (3869.5965 without restraints) Performing minimization step: 3832. Total energy = 3871.3812 kcal/mol (3869.1659 without restraints) Performing minimization step: 3833. Total energy = 3870.9503 kcal/mol (3868.7359 without restraints) Performing minimization step: 3834. Total energy = 3870.5192 kcal/mol (3868.3058 without restraints) Performing minimization step: 3835. Total energy = 3870.0891 kcal/mol (3867.8766 without restraints) Performing minimization step: 3836. Total energy = 3869.6590 kcal/mol (3867.4475 without restraints) Performing minimization step: 3837. Total energy = 3869.2292 kcal/mol (3867.0186 without restraints) Performing minimization step: 3838. Total energy = 3868.7996 kcal/mol (3866.5900 without restraints) Performing minimization step: 3839. Total energy = 3868.3700 kcal/mol (3866.1611 without restraints) Performing minimization step: 3840. Total energy = 3867.9414 kcal/mol (3865.7336 without restraints) Performing minimization step: 3841. Total energy = 3867.5123 kcal/mol (3865.3055 without restraints) Performing minimization step: 3842. Total energy = 3867.0840 kcal/mol (3864.8781 without restraints) Performing minimization step: 3843. Total energy = 3866.6561 kcal/mol (3864.4511 without restraints) Performing minimization step: 3844. Total energy = 3866.2284 kcal/mol (3864.0243 without restraints) Performing minimization step: 3845. Total energy = 3865.8010 kcal/mol (3863.5978 without restraints) Performing minimization step: 3846. Total energy = 3865.3736 kcal/mol (3863.1715 without restraints) Performing minimization step: 3847. Total energy = 3864.9468 kcal/mol (3862.7456 without restraints) Performing minimization step: 3848. Total energy = 3864.5202 kcal/mol (3862.3199 without restraints) Performing minimization step: 3849. Total energy = 3864.0939 kcal/mol (3861.8945 without restraints) Performing minimization step: 3850. Total energy = 3863.6681 kcal/mol (3861.4697 without restraints) Performing minimization step: 3851. Total energy = 3863.2423 kcal/mol (3861.0447 without restraints) Performing minimization step: 3852. Total energy = 3862.8167 kcal/mol (3860.6201 without restraints) Performing minimization step: 3853. Total energy = 3862.3914 kcal/mol (3860.1957 without restraints) Performing minimization step: 3854. Total energy = 3861.9669 kcal/mol (3859.7721 without restraints) Performing minimization step: 3855. Total energy = 3861.5418 kcal/mol (3859.3479 without restraints) Performing minimization step: 3856. Total energy = 3861.1174 kcal/mol (3858.9245 without restraints) Performing minimization step: 3857. Total energy = 3860.6936 kcal/mol (3858.5017 without restraints) Performing minimization step: 3858. Total energy = 3860.2697 kcal/mol (3858.0785 without restraints) Performing minimization step: 3859. Total energy = 3859.8464 kcal/mol (3857.6562 without restraints) Performing minimization step: 3860. Total energy = 3859.4232 kcal/mol (3857.2339 without restraints) Performing minimization step: 3861. Total energy = 3859.0001 kcal/mol (3856.8117 without restraints) Performing minimization step: 3862. Total energy = 3858.5774 kcal/mol (3856.3899 without restraints) Performing minimization step: 3863. Total energy = 3858.1553 kcal/mol (3855.9687 without restraints) Performing minimization step: 3864. Total energy = 3857.7333 kcal/mol (3855.5476 without restraints) Performing minimization step: 3865. Total energy = 3857.3117 kcal/mol (3855.1269 without restraints) Performing minimization step: 3866. Total energy = 3856.8903 kcal/mol (3854.7066 without restraints) Performing minimization step: 3867. Total energy = 3856.4696 kcal/mol (3854.2867 without restraints) Performing minimization step: 3868. Total energy = 3856.0489 kcal/mol (3853.8669 without restraints) Performing minimization step: 3869. Total energy = 3855.6281 kcal/mol (3853.4470 without restraints) Performing minimization step: 3870. Total energy = 3855.2076 kcal/mol (3853.0274 without restraints) Performing minimization step: 3871. Total energy = 3854.7877 kcal/mol (3852.6085 without restraints) Performing minimization step: 3872. Total energy = 3854.3682 kcal/mol (3852.1899 without restraints) Performing minimization step: 3873. Total energy = 3853.9488 kcal/mol (3851.7715 without restraints) Performing minimization step: 3874. Total energy = 3853.5297 kcal/mol (3851.3531 without restraints) Performing minimization step: 3875. Total energy = 3853.1114 kcal/mol (3850.9358 without restraints) Performing minimization step: 3876. Total energy = 3852.6934 kcal/mol (3850.5187 without restraints) Performing minimization step: 3877. Total energy = 3852.2750 kcal/mol (3850.1012 without restraints) Performing minimization step: 3878. Total energy = 3851.8572 kcal/mol (3849.6843 without restraints) Performing minimization step: 3879. Total energy = 3851.4394 kcal/mol (3849.2674 without restraints) Performing minimization step: 3880. Total energy = 3851.0219 kcal/mol (3848.8508 without restraints) Performing minimization step: 3881. Total energy = 3850.6047 kcal/mol (3848.4345 without restraints) Performing minimization step: 3882. Total energy = 3850.1879 kcal/mol (3848.0188 without restraints) Performing minimization step: 3883. Total energy = 3849.7711 kcal/mol (3847.6028 without restraints) Performing minimization step: 3884. Total energy = 3849.3546 kcal/mol (3847.1871 without restraints) Performing minimization step: 3885. Total energy = 3848.9385 kcal/mol (3846.7719 without restraints) Performing minimization step: 3886. Total energy = 3848.5228 kcal/mol (3846.3571 without restraints) Performing minimization step: 3887. Total energy = 3848.1075 kcal/mol (3845.9427 without restraints) Performing minimization step: 3888. Total energy = 3847.6923 kcal/mol (3845.5285 without restraints) Performing minimization step: 3889. Total energy = 3847.2775 kcal/mol (3845.1144 without restraints) Performing minimization step: 3890. Total energy = 3846.8628 kcal/mol (3844.7006 without restraints) Performing minimization step: 3891. Total energy = 3846.4486 kcal/mol (3844.2873 without restraints) Performing minimization step: 3892. Total energy = 3846.0343 kcal/mol (3843.8739 without restraints) Performing minimization step: 3893. Total energy = 3845.6205 kcal/mol (3843.4610 without restraints) Performing minimization step: 3894. Total energy = 3845.2070 kcal/mol (3843.0484 without restraints) Performing minimization step: 3895. Total energy = 3844.7940 kcal/mol (3842.6362 without restraints) Performing minimization step: 3896. Total energy = 3844.3815 kcal/mol (3842.2247 without restraints) Performing minimization step: 3897. Total energy = 3843.9686 kcal/mol (3841.8127 without restraints) Performing minimization step: 3898. Total energy = 3843.5562 kcal/mol (3841.4012 without restraints) Performing minimization step: 3899. Total energy = 3843.1443 kcal/mol (3840.9902 without restraints) Performing minimization step: 3900. Total energy = 3842.7324 kcal/mol (3840.5792 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 3842.3209 kcal/mol (3840.1685 without restraints) Performing minimization step: 3902. Total energy = 3841.9096 kcal/mol (3839.7581 without restraints) Performing minimization step: 3903. Total energy = 3841.4986 kcal/mol (3839.3479 without restraints) Performing minimization step: 3904. Total energy = 3841.0884 kcal/mol (3838.9387 without restraints) Performing minimization step: 3905. Total energy = 3840.6784 kcal/mol (3838.5295 without restraints) Performing minimization step: 3906. Total energy = 3840.2686 kcal/mol (3838.1206 without restraints) Performing minimization step: 3907. Total energy = 3839.8581 kcal/mol (3837.7109 without restraints) Performing minimization step: 3908. Total energy = 3839.4482 kcal/mol (3837.3021 without restraints) Performing minimization step: 3909. Total energy = 3839.0390 kcal/mol (3836.8938 without restraints) Performing minimization step: 3910. Total energy = 3838.6302 kcal/mol (3836.4858 without restraints) Performing minimization step: 3911. Total energy = 3838.2214 kcal/mol (3836.0778 without restraints) Performing minimization step: 3912. Total energy = 3837.8136 kcal/mol (3835.6711 without restraints) Performing minimization step: 3913. Total energy = 3837.4054 kcal/mol (3835.2635 without restraints) Performing minimization step: 3914. Total energy = 3836.9975 kcal/mol (3834.8566 without restraints) Performing minimization step: 3915. Total energy = 3836.5898 kcal/mol (3834.4497 without restraints) Performing minimization step: 3916. Total energy = 3836.1821 kcal/mol (3834.0429 without restraints) Performing minimization step: 3917. Total energy = 3835.7755 kcal/mol (3833.6372 without restraints) Performing minimization step: 3918. Total energy = 3835.3687 kcal/mol (3833.2312 without restraints) Performing minimization step: 3919. Total energy = 3834.9626 kcal/mol (3832.8263 without restraints) Performing minimization step: 3920. Total energy = 3834.5565 kcal/mol (3832.4208 without restraints) Performing minimization step: 3921. Total energy = 3834.1503 kcal/mol (3832.0154 without restraints) Performing minimization step: 3922. Total energy = 3833.7456 kcal/mol (3831.6117 without restraints) Performing minimization step: 3923. Total energy = 3833.3403 kcal/mol (3831.2072 without restraints) Performing minimization step: 3924. Total energy = 3832.9355 kcal/mol (3830.8032 without restraints) Performing minimization step: 3925. Total energy = 3832.5309 kcal/mol (3830.3995 without restraints) Performing minimization step: 3926. Total energy = 3832.1263 kcal/mol (3829.9958 without restraints) Performing minimization step: 3927. Total energy = 3831.7220 kcal/mol (3829.5925 without restraints) Performing minimization step: 3928. Total energy = 3831.3182 kcal/mol (3829.1894 without restraints) Performing minimization step: 3929. Total energy = 3830.9147 kcal/mol (3828.7868 without restraints) Performing minimization step: 3930. Total energy = 3830.5114 kcal/mol (3828.3843 without restraints) Performing minimization step: 3931. Total energy = 3830.1084 kcal/mol (3827.9822 without restraints) Performing minimization step: 3932. Total energy = 3829.7054 kcal/mol (3827.5801 without restraints) Performing minimization step: 3933. Total energy = 3829.3027 kcal/mol (3827.1782 without restraints) Performing minimization step: 3934. Total energy = 3828.9001 kcal/mol (3826.7765 without restraints) Performing minimization step: 3935. Total energy = 3828.4985 kcal/mol (3826.3757 without restraints) Performing minimization step: 3936. Total energy = 3828.0969 kcal/mol (3825.9753 without restraints) Performing minimization step: 3937. Total energy = 3827.6955 kcal/mol (3825.5744 without restraints) Performing minimization step: 3938. Total energy = 3827.2942 kcal/mol (3825.1740 without restraints) Performing minimization step: 3939. Total energy = 3826.8930 kcal/mol (3824.7736 without restraints) Performing minimization step: 3940. Total energy = 3826.4920 kcal/mol (3824.3735 without restraints) Performing minimization step: 3941. Total energy = 3826.0915 kcal/mol (3823.9739 without restraints) Performing minimization step: 3942. Total energy = 3825.6915 kcal/mol (3823.5747 without restraints) Performing minimization step: 3943. Total energy = 3825.2916 kcal/mol (3823.1757 without restraints) Performing minimization step: 3944. Total energy = 3824.8918 kcal/mol (3822.7767 without restraints) Performing minimization step: 3945. Total energy = 3824.4927 kcal/mol (3822.3785 without restraints) Performing minimization step: 3946. Total energy = 3824.0934 kcal/mol (3821.9801 without restraints) Performing minimization step: 3947. Total energy = 3823.6944 kcal/mol (3821.5819 without restraints) Performing minimization step: 3948. Total energy = 3823.2959 kcal/mol (3821.1843 without restraints) Performing minimization step: 3949. Total energy = 3822.8977 kcal/mol (3820.7869 without restraints) Performing minimization step: 3950. Total energy = 3822.4998 kcal/mol (3820.3898 without restraints) Performing minimization step: 3951. Total energy = 3822.1016 kcal/mol (3819.9925 without restraints) Performing minimization step: 3952. Total energy = 3821.7040 kcal/mol (3819.5957 without restraints) Performing minimization step: 3953. Total energy = 3821.3067 kcal/mol (3819.1992 without restraints) Performing minimization step: 3954. Total energy = 3820.9098 kcal/mol (3818.8033 without restraints) Performing minimization step: 3955. Total energy = 3820.5133 kcal/mol (3818.4077 without restraints) Performing minimization step: 3956. Total energy = 3820.1171 kcal/mol (3818.0123 without restraints) Performing minimization step: 3957. Total energy = 3819.7215 kcal/mol (3817.6174 without restraints) Performing minimization step: 3958. Total energy = 3819.3262 kcal/mol (3817.2230 without restraints) Performing minimization step: 3959. Total energy = 3818.9303 kcal/mol (3816.8280 without restraints) Performing minimization step: 3960. Total energy = 3818.5350 kcal/mol (3816.4334 without restraints) Performing minimization step: 3961. Total energy = 3818.1398 kcal/mol (3816.0391 without restraints) Performing minimization step: 3962. Total energy = 3817.7446 kcal/mol (3815.6447 without restraints) Performing minimization step: 3963. Total energy = 3817.3499 kcal/mol (3815.2510 without restraints) Performing minimization step: 3964. Total energy = 3816.9555 kcal/mol (3814.8574 without restraints) Performing minimization step: 3965. Total energy = 3816.5617 kcal/mol (3814.4643 without restraints) Performing minimization step: 3966. Total energy = 3816.1679 kcal/mol (3814.0713 without restraints) Performing minimization step: 3967. Total energy = 3815.7741 kcal/mol (3813.6784 without restraints) Performing minimization step: 3968. Total energy = 3815.3805 kcal/mol (3813.2856 without restraints) Performing minimization step: 3969. Total energy = 3814.9874 kcal/mol (3812.8933 without restraints) Performing minimization step: 3970. Total energy = 3814.5957 kcal/mol (3812.5025 without restraints) Performing minimization step: 3971. Total energy = 3814.2029 kcal/mol (3812.1106 without restraints) Performing minimization step: 3972. Total energy = 3813.8104 kcal/mol (3811.7188 without restraints) Performing minimization step: 3973. Total energy = 3813.4181 kcal/mol (3811.3277 without restraints) Performing minimization step: 3974. Total energy = 3813.0269 kcal/mol (3810.9371 without restraints) Performing minimization step: 3975. Total energy = 3812.6358 kcal/mol (3810.5468 without restraints) Performing minimization step: 3976. Total energy = 3812.2446 kcal/mol (3810.1564 without restraints) Performing minimization step: 3977. Total energy = 3811.8536 kcal/mol (3809.7663 without restraints) Performing minimization step: 3978. Total energy = 3811.4625 kcal/mol (3809.3760 without restraints) Performing minimization step: 3979. Total energy = 3811.0719 kcal/mol (3808.9863 without restraints) Performing minimization step: 3980. Total energy = 3810.6816 kcal/mol (3808.5967 without restraints) Performing minimization step: 3981. Total energy = 3810.2914 kcal/mol (3808.2074 without restraints) Performing minimization step: 3982. Total energy = 3809.9013 kcal/mol (3807.8181 without restraints) Performing minimization step: 3983. Total energy = 3809.5116 kcal/mol (3807.4293 without restraints) Performing minimization step: 3984. Total energy = 3809.1222 kcal/mol (3807.0408 without restraints) Performing minimization step: 3985. Total energy = 3808.7334 kcal/mol (3806.6528 without restraints) Performing minimization step: 3986. Total energy = 3808.3445 kcal/mol (3806.2646 without restraints) Performing minimization step: 3987. Total energy = 3807.9557 kcal/mol (3805.8766 without restraints) Performing minimization step: 3988. Total energy = 3807.5675 kcal/mol (3805.4893 without restraints) Performing minimization step: 3989. Total energy = 3807.1796 kcal/mol (3805.1023 without restraints) Performing minimization step: 3990. Total energy = 3806.7919 kcal/mol (3804.7153 without restraints) Performing minimization step: 3991. Total energy = 3806.4043 kcal/mol (3804.3285 without restraints) Performing minimization step: 3992. Total energy = 3806.0172 kcal/mol (3803.9423 without restraints) Performing minimization step: 3993. Total energy = 3805.6305 kcal/mol (3803.5566 without restraints) Performing minimization step: 3994. Total energy = 3805.2443 kcal/mol (3803.1710 without restraints) Performing minimization step: 3995. Total energy = 3804.8575 kcal/mol (3802.7850 without restraints) Performing minimization step: 3996. Total energy = 3804.4719 kcal/mol (3802.4004 without restraints) Performing minimization step: 3997. Total energy = 3804.0860 kcal/mol (3802.0151 without restraints) Performing minimization step: 3998. Total energy = 3803.7002 kcal/mol (3801.6302 without restraints) Performing minimization step: 3999. Total energy = 3803.3149 kcal/mol (3801.2458 without restraints) Performing minimization step: 4000. Total energy = 3802.9298 kcal/mol (3800.8613 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 3802.5448 kcal/mol (3800.4772 without restraints) Performing minimization step: 4002. Total energy = 3802.1602 kcal/mol (3800.0934 without restraints) Performing minimization step: 4003. Total energy = 3801.7760 kcal/mol (3799.7100 without restraints) Performing minimization step: 4004. Total energy = 3801.3920 kcal/mol (3799.3268 without restraints) Performing minimization step: 4005. Total energy = 3801.0081 kcal/mol (3798.9438 without restraints) Performing minimization step: 4006. Total energy = 3800.6244 kcal/mol (3798.5609 without restraints) Performing minimization step: 4007. Total energy = 3800.2413 kcal/mol (3798.1786 without restraints) Performing minimization step: 4008. Total energy = 3799.8581 kcal/mol (3797.7961 without restraints) Performing minimization step: 4009. Total energy = 3799.4749 kcal/mol (3797.4137 without restraints) Performing minimization step: 4010. Total energy = 3799.0923 kcal/mol (3797.0322 without restraints) Performing minimization step: 4011. Total energy = 3798.7104 kcal/mol (3796.6512 without restraints) Performing minimization step: 4012. Total energy = 3798.3286 kcal/mol (3796.2700 without restraints) Performing minimization step: 4013. Total energy = 3797.9466 kcal/mol (3795.8889 without restraints) Performing minimization step: 4014. Total energy = 3797.5650 kcal/mol (3795.5079 without restraints) Performing minimization step: 4015. Total energy = 3797.1835 kcal/mol (3795.1273 without restraints) Performing minimization step: 4016. Total energy = 3796.8027 kcal/mol (3794.7474 without restraints) Performing minimization step: 4017. Total energy = 3796.4219 kcal/mol (3794.3672 without restraints) Performing minimization step: 4018. Total energy = 3796.0412 kcal/mol (3793.9873 without restraints) Performing minimization step: 4019. Total energy = 3795.6608 kcal/mol (3793.6078 without restraints) Performing minimization step: 4020. Total energy = 3795.2808 kcal/mol (3793.2286 without restraints) Performing minimization step: 4021. Total energy = 3794.9011 kcal/mol (3792.8496 without restraints) Performing minimization step: 4022. Total energy = 3794.5215 kcal/mol (3792.4709 without restraints) Performing minimization step: 4023. Total energy = 3794.1424 kcal/mol (3792.0926 without restraints) Performing minimization step: 4024. Total energy = 3793.7635 kcal/mol (3791.7145 without restraints) Performing minimization step: 4025. Total energy = 3793.3847 kcal/mol (3791.3365 without restraints) Performing minimization step: 4026. Total energy = 3793.0062 kcal/mol (3790.9589 without restraints) Performing minimization step: 4027. Total energy = 3792.6275 kcal/mol (3790.5808 without restraints) Performing minimization step: 4028. Total energy = 3792.2494 kcal/mol (3790.2036 without restraints) Performing minimization step: 4029. Total energy = 3791.8715 kcal/mol (3789.8265 without restraints) Performing minimization step: 4030. Total energy = 3791.4938 kcal/mol (3789.4496 without restraints) Performing minimization step: 4031. Total energy = 3791.1162 kcal/mol (3789.0729 without restraints) Performing minimization step: 4032. Total energy = 3790.7390 kcal/mol (3788.6964 without restraints) Performing minimization step: 4033. Total energy = 3790.3620 kcal/mol (3788.3202 without restraints) Performing minimization step: 4034. Total energy = 3789.9854 kcal/mol (3787.9443 without restraints) Performing minimization step: 4035. Total energy = 3789.6088 kcal/mol (3787.5685 without restraints) Performing minimization step: 4036. Total energy = 3789.2325 kcal/mol (3787.1929 without restraints) Performing minimization step: 4037. Total energy = 3788.8564 kcal/mol (3786.8177 without restraints) Performing minimization step: 4038. Total energy = 3788.4811 kcal/mol (3786.4432 without restraints) Performing minimization step: 4039. Total energy = 3788.1053 kcal/mol (3786.0682 without restraints) Performing minimization step: 4040. Total energy = 3787.7300 kcal/mol (3785.6937 without restraints) Performing minimization step: 4041. Total energy = 3787.3550 kcal/mol (3785.3196 without restraints) Performing minimization step: 4042. Total energy = 3786.9803 kcal/mol (3784.9455 without restraints) Performing minimization step: 4043. Total energy = 3786.6057 kcal/mol (3784.5718 without restraints) Performing minimization step: 4044. Total energy = 3786.2321 kcal/mol (3784.1989 without restraints) Performing minimization step: 4045. Total energy = 3785.8580 kcal/mol (3783.8256 without restraints) Performing minimization step: 4046. Total energy = 3785.4847 kcal/mol (3783.4531 without restraints) Performing minimization step: 4047. Total energy = 3785.1114 kcal/mol (3783.0806 without restraints) Performing minimization step: 4048. Total energy = 3784.7383 kcal/mol (3782.7083 without restraints) Performing minimization step: 4049. Total energy = 3784.3652 kcal/mol (3782.3360 without restraints) Performing minimization step: 4050. Total energy = 3783.9925 kcal/mol (3781.9641 without restraints) Performing minimization step: 4051. Total energy = 3783.6200 kcal/mol (3781.5925 without restraints) Performing minimization step: 4052. Total energy = 3783.2477 kcal/mol (3781.2209 without restraints) Performing minimization step: 4053. Total energy = 3782.8756 kcal/mol (3780.8495 without restraints) Performing minimization step: 4054. Total energy = 3782.5040 kcal/mol (3780.4787 without restraints) Performing minimization step: 4055. Total energy = 3782.1325 kcal/mol (3780.1080 without restraints) Performing minimization step: 4056. Total energy = 3781.7609 kcal/mol (3779.7372 without restraints) Performing minimization step: 4057. Total energy = 3781.3904 kcal/mol (3779.3674 without restraints) Performing minimization step: 4058. Total energy = 3781.0199 kcal/mol (3778.9977 without restraints) Performing minimization step: 4059. Total energy = 3780.6499 kcal/mol (3778.6285 without restraints) Performing minimization step: 4060. Total energy = 3780.2797 kcal/mol (3778.2591 without restraints) Performing minimization step: 4061. Total energy = 3779.9092 kcal/mol (3777.8892 without restraints) Performing minimization step: 4062. Total energy = 3779.5393 kcal/mol (3777.5203 without restraints) Performing minimization step: 4063. Total energy = 3779.1694 kcal/mol (3777.1511 without restraints) Performing minimization step: 4064. Total energy = 3778.8003 kcal/mol (3776.7828 without restraints) Performing minimization step: 4065. Total energy = 3778.4311 kcal/mol (3776.4144 without restraints) Performing minimization step: 4066. Total energy = 3778.0620 kcal/mol (3776.0461 without restraints) Performing minimization step: 4067. Total energy = 3777.6932 kcal/mol (3775.6780 without restraints) Performing minimization step: 4068. Total energy = 3777.3246 kcal/mol (3775.3102 without restraints) Performing minimization step: 4069. Total energy = 3776.9560 kcal/mol (3774.9424 without restraints) Performing minimization step: 4070. Total energy = 3776.5880 kcal/mol (3774.5751 without restraints) Performing minimization step: 4071. Total energy = 3776.2199 kcal/mol (3774.2078 without restraints) Performing minimization step: 4072. Total energy = 3775.8527 kcal/mol (3773.8414 without restraints) Performing minimization step: 4073. Total energy = 3775.4853 kcal/mol (3773.4748 without restraints) Performing minimization step: 4074. Total energy = 3775.1182 kcal/mol (3773.1085 without restraints) Performing minimization step: 4075. Total energy = 3774.7516 kcal/mol (3772.7426 without restraints) Performing minimization step: 4076. Total energy = 3774.3849 kcal/mol (3772.3767 without restraints) Performing minimization step: 4077. Total energy = 3774.0184 kcal/mol (3772.0110 without restraints) Performing minimization step: 4078. Total energy = 3773.6522 kcal/mol (3771.6455 without restraints) Performing minimization step: 4079. Total energy = 3773.2863 kcal/mol (3771.2805 without restraints) Performing minimization step: 4080. Total energy = 3772.9208 kcal/mol (3770.9157 without restraints) Performing minimization step: 4081. Total energy = 3772.5552 kcal/mol (3770.5508 without restraints) Performing minimization step: 4082. Total energy = 3772.1901 kcal/mol (3770.1865 without restraints) Performing minimization step: 4083. Total energy = 3771.8247 kcal/mol (3769.8218 without restraints) Performing minimization step: 4084. Total energy = 3771.4598 kcal/mol (3769.4578 without restraints) Performing minimization step: 4085. Total energy = 3771.0958 kcal/mol (3769.0947 without restraints) Performing minimization step: 4086. Total energy = 3770.7317 kcal/mol (3768.7312 without restraints) Performing minimization step: 4087. Total energy = 3770.3675 kcal/mol (3768.3675 without restraints) Performing minimization step: 4088. Total energy = 3770.0040 kcal/mol (3768.0050 without restraints) Performing minimization step: 4089. Total energy = 3769.6403 kcal/mol (3767.6422 without restraints) Performing minimization step: 4090. Total energy = 3769.2772 kcal/mol (3767.2798 without restraints) Performing minimization step: 4091. Total energy = 3768.9145 kcal/mol (3766.9178 without restraints) Performing minimization step: 4092. Total energy = 3768.5520 kcal/mol (3766.5559 without restraints) Performing minimization step: 4093. Total energy = 3768.1893 kcal/mol (3766.1941 without restraints) Performing minimization step: 4094. Total energy = 3767.8265 kcal/mol (3765.8322 without restraints) Performing minimization step: 4095. Total energy = 3767.4644 kcal/mol (3765.4707 without restraints) Performing minimization step: 4096. Total energy = 3767.1024 kcal/mol (3765.1095 without restraints) Performing minimization step: 4097. Total energy = 3766.7406 kcal/mol (3764.7485 without restraints) Performing minimization step: 4098. Total energy = 3766.3789 kcal/mol (3764.3875 without restraints) Performing minimization step: 4099. Total energy = 3766.0179 kcal/mol (3764.0272 without restraints) Performing minimization step: 4100. Total energy = 3765.6566 kcal/mol (3763.6667 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 3765.2959 kcal/mol (3763.3069 without restraints) Performing minimization step: 4102. Total energy = 3764.9355 kcal/mol (3762.9471 without restraints) Performing minimization step: 4103. Total energy = 3764.5749 kcal/mol (3762.5874 without restraints) Performing minimization step: 4104. Total energy = 3764.2149 kcal/mol (3762.2280 without restraints) Performing minimization step: 4105. Total energy = 3763.8550 kcal/mol (3761.8689 without restraints) Performing minimization step: 4106. Total energy = 3763.4950 kcal/mol (3761.5098 without restraints) Performing minimization step: 4107. Total energy = 3763.1356 kcal/mol (3761.1510 without restraints) Performing minimization step: 4108. Total energy = 3762.7767 kcal/mol (3760.7929 without restraints) Performing minimization step: 4109. Total energy = 3762.4174 kcal/mol (3760.4344 without restraints) Performing minimization step: 4110. Total energy = 3762.0586 kcal/mol (3760.0763 without restraints) Performing minimization step: 4111. Total energy = 3761.7003 kcal/mol (3759.7188 without restraints) Performing minimization step: 4112. Total energy = 3761.3423 kcal/mol (3759.3615 without restraints) Performing minimization step: 4113. Total energy = 3760.9842 kcal/mol (3759.0041 without restraints) Performing minimization step: 4114. Total energy = 3760.6261 kcal/mol (3758.6467 without restraints) Performing minimization step: 4115. Total energy = 3760.2686 kcal/mol (3758.2901 without restraints) Performing minimization step: 4116. Total energy = 3759.9112 kcal/mol (3757.9334 without restraints) Performing minimization step: 4117. Total energy = 3759.5542 kcal/mol (3757.5772 without restraints) Performing minimization step: 4118. Total energy = 3759.1973 kcal/mol (3757.2209 without restraints) Performing minimization step: 4119. Total energy = 3758.8405 kcal/mol (3756.8650 without restraints) Performing minimization step: 4120. Total energy = 3758.4842 kcal/mol (3756.5094 without restraints) Performing minimization step: 4121. Total energy = 3758.1280 kcal/mol (3756.1539 without restraints) Performing minimization step: 4122. Total energy = 3757.7731 kcal/mol (3755.8000 without restraints) Performing minimization step: 4123. Total energy = 3757.4177 kcal/mol (3755.4451 without restraints) Performing minimization step: 4124. Total energy = 3757.0619 kcal/mol (3755.0901 without restraints) Performing minimization step: 4125. Total energy = 3756.7068 kcal/mol (3754.7357 without restraints) Performing minimization step: 4126. Total energy = 3756.3516 kcal/mol (3754.3813 without restraints) Performing minimization step: 4127. Total energy = 3755.9974 kcal/mol (3754.0279 without restraints) Performing minimization step: 4128. Total energy = 3755.6427 kcal/mol (3753.6739 without restraints) Performing minimization step: 4129. Total energy = 3755.2884 kcal/mol (3753.3204 without restraints) Performing minimization step: 4130. Total energy = 3754.9341 kcal/mol (3752.9666 without restraints) Performing minimization step: 4131. Total energy = 3754.5799 kcal/mol (3752.6134 without restraints) Performing minimization step: 4132. Total energy = 3754.2267 kcal/mol (3752.2609 without restraints) Performing minimization step: 4133. Total energy = 3753.8736 kcal/mol (3751.9084 without restraints) Performing minimization step: 4134. Total energy = 3753.5206 kcal/mol (3751.5562 without restraints) Performing minimization step: 4135. Total energy = 3753.1677 kcal/mol (3751.2041 without restraints) Performing minimization step: 4136. Total energy = 3752.8149 kcal/mol (3750.8521 without restraints) Performing minimization step: 4137. Total energy = 3752.4624 kcal/mol (3750.5002 without restraints) Performing minimization step: 4138. Total energy = 3752.1103 kcal/mol (3750.1489 without restraints) Performing minimization step: 4139. Total energy = 3751.7583 kcal/mol (3749.7976 without restraints) Performing minimization step: 4140. Total energy = 3751.4061 kcal/mol (3749.4462 without restraints) Performing minimization step: 4141. Total energy = 3751.0544 kcal/mol (3749.0952 without restraints) Performing minimization step: 4142. Total energy = 3750.7028 kcal/mol (3748.7443 without restraints) Performing minimization step: 4143. Total energy = 3750.3515 kcal/mol (3748.3938 without restraints) Performing minimization step: 4144. Total energy = 3750.0004 kcal/mol (3748.0434 without restraints) Performing minimization step: 4145. Total energy = 3749.6496 kcal/mol (3747.6935 without restraints) Performing minimization step: 4146. Total energy = 3749.2994 kcal/mol (3747.3440 without restraints) Performing minimization step: 4147. Total energy = 3748.9490 kcal/mol (3746.9942 without restraints) Performing minimization step: 4148. Total energy = 3748.5993 kcal/mol (3746.6452 without restraints) Performing minimization step: 4149. Total energy = 3748.2492 kcal/mol (3746.2959 without restraints) Performing minimization step: 4150. Total energy = 3747.8997 kcal/mol (3745.9472 without restraints) Performing minimization step: 4151. Total energy = 3747.5500 kcal/mol (3745.5983 without restraints) Performing minimization step: 4152. Total energy = 3747.2009 kcal/mol (3745.2499 without restraints) Performing minimization step: 4153. Total energy = 3746.8517 kcal/mol (3744.9013 without restraints) Performing minimization step: 4154. Total energy = 3746.5030 kcal/mol (3744.5533 without restraints) Performing minimization step: 4155. Total energy = 3746.1552 kcal/mol (3744.2065 without restraints) Performing minimization step: 4156. Total energy = 3745.8067 kcal/mol (3743.8585 without restraints) Performing minimization step: 4157. Total energy = 3745.4585 kcal/mol (3743.5110 without restraints) Performing minimization step: 4158. Total energy = 3745.1105 kcal/mol (3743.1638 without restraints) Performing minimization step: 4159. Total energy = 3744.7634 kcal/mol (3742.8174 without restraints) Performing minimization step: 4160. Total energy = 3744.4158 kcal/mol (3742.4706 without restraints) Performing minimization step: 4161. Total energy = 3744.0688 kcal/mol (3742.1243 without restraints) Performing minimization step: 4162. Total energy = 3743.7221 kcal/mol (3741.7784 without restraints) Performing minimization step: 4163. Total energy = 3743.3752 kcal/mol (3741.4320 without restraints) Performing minimization step: 4164. Total energy = 3743.0288 kcal/mol (3741.0865 without restraints) Performing minimization step: 4165. Total energy = 3742.6824 kcal/mol (3740.7407 without restraints) Performing minimization step: 4166. Total energy = 3742.3362 kcal/mol (3740.3954 without restraints) Performing minimization step: 4167. Total energy = 3741.9902 kcal/mol (3740.0500 without restraints) Performing minimization step: 4168. Total energy = 3741.6448 kcal/mol (3739.7053 without restraints) Performing minimization step: 4169. Total energy = 3741.2995 kcal/mol (3739.3608 without restraints) Performing minimization step: 4170. Total energy = 3740.9541 kcal/mol (3739.0162 without restraints) Performing minimization step: 4171. Total energy = 3740.6090 kcal/mol (3738.6718 without restraints) Performing minimization step: 4172. Total energy = 3740.2641 kcal/mol (3738.3277 without restraints) Performing minimization step: 4173. Total energy = 3739.9197 kcal/mol (3737.9840 without restraints) Performing minimization step: 4174. Total energy = 3739.5754 kcal/mol (3737.6403 without restraints) Performing minimization step: 4175. Total energy = 3739.2309 kcal/mol (3737.2963 without restraints) Performing minimization step: 4176. Total energy = 3738.8863 kcal/mol (3736.9527 without restraints) Performing minimization step: 4177. Total energy = 3738.5425 kcal/mol (3736.6096 without restraints) Performing minimization step: 4178. Total energy = 3738.1989 kcal/mol (3736.2668 without restraints) Performing minimization step: 4179. Total energy = 3737.8568 kcal/mol (3735.9254 without restraints) Performing minimization step: 4180. Total energy = 3737.5136 kcal/mol (3735.5828 without restraints) Performing minimization step: 4181. Total energy = 3737.1707 kcal/mol (3735.2406 without restraints) Performing minimization step: 4182. Total energy = 3736.8281 kcal/mol (3734.8989 without restraints) Performing minimization step: 4183. Total energy = 3736.4863 kcal/mol (3734.5577 without restraints) Performing minimization step: 4184. Total energy = 3736.1439 kcal/mol (3734.2160 without restraints) Performing minimization step: 4185. Total energy = 3735.8019 kcal/mol (3733.8748 without restraints) Performing minimization step: 4186. Total energy = 3735.4602 kcal/mol (3733.5339 without restraints) Performing minimization step: 4187. Total energy = 3735.1190 kcal/mol (3733.1933 without restraints) Performing minimization step: 4188. Total energy = 3734.7772 kcal/mol (3732.8522 without restraints) Performing minimization step: 4189. Total energy = 3734.4359 kcal/mol (3732.5116 without restraints) Performing minimization step: 4190. Total energy = 3734.0950 kcal/mol (3732.1714 without restraints) Performing minimization step: 4191. Total energy = 3733.7542 kcal/mol (3731.8315 without restraints) Performing minimization step: 4192. Total energy = 3733.4138 kcal/mol (3731.4917 without restraints) Performing minimization step: 4193. Total energy = 3733.0739 kcal/mol (3731.1527 without restraints) Performing minimization step: 4194. Total energy = 3732.7337 kcal/mol (3730.8131 without restraints) Performing minimization step: 4195. Total energy = 3732.3940 kcal/mol (3730.4740 without restraints) Performing minimization step: 4196. Total energy = 3732.0540 kcal/mol (3730.1348 without restraints) Performing minimization step: 4197. Total energy = 3731.7148 kcal/mol (3729.7962 without restraints) Performing minimization step: 4198. Total energy = 3731.3753 kcal/mol (3729.4575 without restraints) Performing minimization step: 4199. Total energy = 3731.0362 kcal/mol (3729.1190 without restraints) Performing minimization step: 4200. Total energy = 3730.6972 kcal/mol (3728.7809 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 3730.3585 kcal/mol (3728.4428 without restraints) Performing minimization step: 4202. Total energy = 3730.0199 kcal/mol (3728.1049 without restraints) Performing minimization step: 4203. Total energy = 3729.6816 kcal/mol (3727.7673 without restraints) Performing minimization step: 4204. Total energy = 3729.3439 kcal/mol (3727.4303 without restraints) Performing minimization step: 4205. Total energy = 3729.0062 kcal/mol (3727.0934 without restraints) Performing minimization step: 4206. Total energy = 3728.6685 kcal/mol (3726.7563 without restraints) Performing minimization step: 4207. Total energy = 3728.3311 kcal/mol (3726.4197 without restraints) Performing minimization step: 4208. Total energy = 3727.9938 kcal/mol (3726.0831 without restraints) Performing minimization step: 4209. Total energy = 3727.6567 kcal/mol (3725.7465 without restraints) Performing minimization step: 4210. Total energy = 3727.3194 kcal/mol (3725.4101 without restraints) Performing minimization step: 4211. Total energy = 3726.9829 kcal/mol (3725.0744 without restraints) Performing minimization step: 4212. Total energy = 3726.6468 kcal/mol (3724.7389 without restraints) Performing minimization step: 4213. Total energy = 3726.3104 kcal/mol (3724.4032 without restraints) Performing minimization step: 4214. Total energy = 3725.9749 kcal/mol (3724.0686 without restraints) Performing minimization step: 4215. Total energy = 3725.6393 kcal/mol (3723.7334 without restraints) Performing minimization step: 4216. Total energy = 3725.3037 kcal/mol (3723.3986 without restraints) Performing minimization step: 4217. Total energy = 3724.9682 kcal/mol (3723.0638 without restraints) Performing minimization step: 4218. Total energy = 3724.6329 kcal/mol (3722.7292 without restraints) Performing minimization step: 4219. Total energy = 3724.2979 kcal/mol (3722.3949 without restraints) Performing minimization step: 4220. Total energy = 3723.9627 kcal/mol (3722.0605 without restraints) Performing minimization step: 4221. Total energy = 3723.6284 kcal/mol (3721.7268 without restraints) Performing minimization step: 4222. Total energy = 3723.2943 kcal/mol (3721.3934 without restraints) Performing minimization step: 4223. Total energy = 3722.9606 kcal/mol (3721.0604 without restraints) Performing minimization step: 4224. Total energy = 3722.6270 kcal/mol (3720.7275 without restraints) Performing minimization step: 4225. Total energy = 3722.2930 kcal/mol (3720.3942 without restraints) Performing minimization step: 4226. Total energy = 3721.9593 kcal/mol (3720.0613 without restraints) Performing minimization step: 4227. Total energy = 3721.6267 kcal/mol (3719.7296 without restraints) Performing minimization step: 4228. Total energy = 3721.2940 kcal/mol (3719.3972 without restraints) Performing minimization step: 4229. Total energy = 3720.9608 kcal/mol (3719.0648 without restraints) Performing minimization step: 4230. Total energy = 3720.6282 kcal/mol (3718.7329 without restraints) Performing minimization step: 4231. Total energy = 3720.2955 kcal/mol (3718.4010 without restraints) Performing minimization step: 4232. Total energy = 3719.9633 kcal/mol (3718.0694 without restraints) Performing minimization step: 4233. Total energy = 3719.6314 kcal/mol (3717.7382 without restraints) Performing minimization step: 4234. Total energy = 3719.2993 kcal/mol (3717.4068 without restraints) Performing minimization step: 4235. Total energy = 3718.9677 kcal/mol (3717.0759 without restraints) Performing minimization step: 4236. Total energy = 3718.6363 kcal/mol (3716.7452 without restraints) Performing minimization step: 4237. Total energy = 3718.3054 kcal/mol (3716.4151 without restraints) Performing minimization step: 4238. Total energy = 3717.9749 kcal/mol (3716.0853 without restraints) Performing minimization step: 4239. Total energy = 3717.6444 kcal/mol (3715.7554 without restraints) Performing minimization step: 4240. Total energy = 3717.3136 kcal/mol (3715.4253 without restraints) Performing minimization step: 4241. Total energy = 3716.9829 kcal/mol (3715.0954 without restraints) Performing minimization step: 4242. Total energy = 3716.6531 kcal/mol (3714.7664 without restraints) Performing minimization step: 4243. Total energy = 3716.3232 kcal/mol (3714.4370 without restraints) Performing minimization step: 4244. Total energy = 3715.9933 kcal/mol (3714.1077 without restraints) Performing minimization step: 4245. Total energy = 3715.6636 kcal/mol (3713.7788 without restraints) Performing minimization step: 4246. Total energy = 3715.3343 kcal/mol (3713.4502 without restraints) Performing minimization step: 4247. Total energy = 3715.0049 kcal/mol (3713.1215 without restraints) Performing minimization step: 4248. Total energy = 3714.6760 kcal/mol (3712.7932 without restraints) Performing minimization step: 4249. Total energy = 3714.3469 kcal/mol (3712.4649 without restraints) Performing minimization step: 4250. Total energy = 3714.0178 kcal/mol (3712.1363 without restraints) Performing minimization step: 4251. Total energy = 3713.6887 kcal/mol (3711.8080 without restraints) Performing minimization step: 4252. Total energy = 3713.3604 kcal/mol (3711.4805 without restraints) Performing minimization step: 4253. Total energy = 3713.0324 kcal/mol (3711.1532 without restraints) Performing minimization step: 4254. Total energy = 3712.7051 kcal/mol (3710.8265 without restraints) Performing minimization step: 4255. Total energy = 3712.3776 kcal/mol (3710.4999 without restraints) Performing minimization step: 4256. Total energy = 3712.0507 kcal/mol (3710.1735 without restraints) Performing minimization step: 4257. Total energy = 3711.7236 kcal/mol (3709.8471 without restraints) Performing minimization step: 4258. Total energy = 3711.3969 kcal/mol (3709.5210 without restraints) Performing minimization step: 4259. Total energy = 3711.0701 kcal/mol (3709.1949 without restraints) Performing minimization step: 4260. Total energy = 3710.7434 kcal/mol (3708.8690 without restraints) Performing minimization step: 4261. Total energy = 3710.4172 kcal/mol (3708.5437 without restraints) Performing minimization step: 4262. Total energy = 3710.0910 kcal/mol (3708.2178 without restraints) Performing minimization step: 4263. Total energy = 3709.7649 kcal/mol (3707.8925 without restraints) Performing minimization step: 4264. Total energy = 3709.4389 kcal/mol (3707.5672 without restraints) Performing minimization step: 4265. Total energy = 3709.1131 kcal/mol (3707.2421 without restraints) Performing minimization step: 4266. Total energy = 3708.7878 kcal/mol (3706.9175 without restraints) Performing minimization step: 4267. Total energy = 3708.4624 kcal/mol (3706.5928 without restraints) Performing minimization step: 4268. Total energy = 3708.1374 kcal/mol (3706.2686 without restraints) Performing minimization step: 4269. Total energy = 3707.8126 kcal/mol (3705.9444 without restraints) Performing minimization step: 4270. Total energy = 3707.4881 kcal/mol (3705.6205 without restraints) Performing minimization step: 4271. Total energy = 3707.1637 kcal/mol (3705.2969 without restraints) Performing minimization step: 4272. Total energy = 3706.8400 kcal/mol (3704.9738 without restraints) Performing minimization step: 4273. Total energy = 3706.5154 kcal/mol (3704.6498 without restraints) Performing minimization step: 4274. Total energy = 3706.1914 kcal/mol (3704.3266 without restraints) Performing minimization step: 4275. Total energy = 3705.8679 kcal/mol (3704.0038 without restraints) Performing minimization step: 4276. Total energy = 3705.5444 kcal/mol (3703.6809 without restraints) Performing minimization step: 4277. Total energy = 3705.2207 kcal/mol (3703.3579 without restraints) Performing minimization step: 4278. Total energy = 3704.8974 kcal/mol (3703.0353 without restraints) Performing minimization step: 4279. Total energy = 3704.5747 kcal/mol (3702.7132 without restraints) Performing minimization step: 4280. Total energy = 3704.2520 kcal/mol (3702.3912 without restraints) Performing minimization step: 4281. Total energy = 3703.9296 kcal/mol (3702.0696 without restraints) Performing minimization step: 4282. Total energy = 3703.6074 kcal/mol (3701.7480 without restraints) Performing minimization step: 4283. Total energy = 3703.2849 kcal/mol (3701.4262 without restraints) Performing minimization step: 4284. Total energy = 3702.9629 kcal/mol (3701.1048 without restraints) Performing minimization step: 4285. Total energy = 3702.6410 kcal/mol (3700.7836 without restraints) Performing minimization step: 4286. Total energy = 3702.3198 kcal/mol (3700.4633 without restraints) Performing minimization step: 4287. Total energy = 3701.9982 kcal/mol (3700.1422 without restraints) Performing minimization step: 4288. Total energy = 3701.6769 kcal/mol (3699.8216 without restraints) Performing minimization step: 4289. Total energy = 3701.3558 kcal/mol (3699.5012 without restraints) Performing minimization step: 4290. Total energy = 3701.0349 kcal/mol (3699.1809 without restraints) Performing minimization step: 4291. Total energy = 3700.7141 kcal/mol (3698.8608 without restraints) Performing minimization step: 4292. Total energy = 3700.3938 kcal/mol (3698.5412 without restraints) Performing minimization step: 4293. Total energy = 3700.0735 kcal/mol (3698.2216 without restraints) Performing minimization step: 4294. Total energy = 3699.7534 kcal/mol (3697.9020 without restraints) Performing minimization step: 4295. Total energy = 3699.4335 kcal/mol (3697.5830 without restraints) Performing minimization step: 4296. Total energy = 3699.1139 kcal/mol (3697.2639 without restraints) Performing minimization step: 4297. Total energy = 3698.7943 kcal/mol (3696.9451 without restraints) Performing minimization step: 4298. Total energy = 3698.4750 kcal/mol (3696.6265 without restraints) Performing minimization step: 4299. Total energy = 3698.1559 kcal/mol (3696.3080 without restraints) Performing minimization step: 4300. Total energy = 3697.8370 kcal/mol (3695.9898 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 3697.5178 kcal/mol (3695.6713 without restraints) Performing minimization step: 4302. Total energy = 3697.1993 kcal/mol (3695.3534 without restraints) Performing minimization step: 4303. Total energy = 3696.8812 kcal/mol (3695.0360 without restraints) Performing minimization step: 4304. Total energy = 3696.5632 kcal/mol (3694.7188 without restraints) Performing minimization step: 4305. Total energy = 3696.2452 kcal/mol (3694.4013 without restraints) Performing minimization step: 4306. Total energy = 3695.9273 kcal/mol (3694.0841 without restraints) Performing minimization step: 4307. Total energy = 3695.6098 kcal/mol (3693.7675 without restraints) Performing minimization step: 4308. Total energy = 3695.2927 kcal/mol (3693.4510 without restraints) Performing minimization step: 4309. Total energy = 3694.9755 kcal/mol (3693.1343 without restraints) Performing minimization step: 4310. Total energy = 3694.6588 kcal/mol (3692.8182 without restraints) Performing minimization step: 4311. Total energy = 3694.3419 kcal/mol (3692.5020 without restraints) Performing minimization step: 4312. Total energy = 3694.0258 kcal/mol (3692.1866 without restraints) Performing minimization step: 4313. Total energy = 3693.7094 kcal/mol (3691.8708 without restraints) Performing minimization step: 4314. Total energy = 3693.3929 kcal/mol (3691.5551 without restraints) Performing minimization step: 4315. Total energy = 3693.0773 kcal/mol (3691.2403 without restraints) Performing minimization step: 4316. Total energy = 3692.7615 kcal/mol (3690.9249 without restraints) Performing minimization step: 4317. Total energy = 3692.4459 kcal/mol (3690.6102 without restraints) Performing minimization step: 4318. Total energy = 3692.1304 kcal/mol (3690.2952 without restraints) Performing minimization step: 4319. Total energy = 3691.8148 kcal/mol (3689.9802 without restraints) Performing minimization step: 4320. Total energy = 3691.4995 kcal/mol (3689.6656 without restraints) Performing minimization step: 4321. Total energy = 3691.1842 kcal/mol (3689.3510 without restraints) Performing minimization step: 4322. Total energy = 3690.8691 kcal/mol (3689.0366 without restraints) Performing minimization step: 4323. Total energy = 3690.5545 kcal/mol (3688.7226 without restraints) Performing minimization step: 4324. Total energy = 3690.2401 kcal/mol (3688.4089 without restraints) Performing minimization step: 4325. Total energy = 3689.9261 kcal/mol (3688.0957 without restraints) Performing minimization step: 4326. Total energy = 3689.6125 kcal/mol (3687.7826 without restraints) Performing minimization step: 4327. Total energy = 3689.2987 kcal/mol (3687.4695 without restraints) Performing minimization step: 4328. Total energy = 3688.9863 kcal/mol (3687.1578 without restraints) Performing minimization step: 4329. Total energy = 3688.6728 kcal/mol (3686.8448 without restraints) Performing minimization step: 4330. Total energy = 3688.3592 kcal/mol (3686.5320 without restraints) Performing minimization step: 4331. Total energy = 3688.0460 kcal/mol (3686.2194 without restraints) Performing minimization step: 4332. Total energy = 3687.7332 kcal/mol (3685.9073 without restraints) Performing minimization step: 4333. Total energy = 3687.4203 kcal/mol (3685.5950 without restraints) Performing minimization step: 4334. Total energy = 3687.1076 kcal/mol (3685.2830 without restraints) Performing minimization step: 4335. Total energy = 3686.7955 kcal/mol (3684.9716 without restraints) Performing minimization step: 4336. Total energy = 3686.4834 kcal/mol (3684.6601 without restraints) Performing minimization step: 4337. Total energy = 3686.1712 kcal/mol (3684.3486 without restraints) Performing minimization step: 4338. Total energy = 3685.8593 kcal/mol (3684.0373 without restraints) Performing minimization step: 4339. Total energy = 3685.5473 kcal/mol (3683.7260 without restraints) Performing minimization step: 4340. Total energy = 3685.2358 kcal/mol (3683.4151 without restraints) Performing minimization step: 4341. Total energy = 3684.9244 kcal/mol (3683.1045 without restraints) Performing minimization step: 4342. Total energy = 3684.6131 kcal/mol (3682.7938 without restraints) Performing minimization step: 4343. Total energy = 3684.3028 kcal/mol (3682.4841 without restraints) Performing minimization step: 4344. Total energy = 3683.9924 kcal/mol (3682.1746 without restraints) Performing minimization step: 4345. Total energy = 3683.6820 kcal/mol (3681.8646 without restraints) Performing minimization step: 4346. Total energy = 3683.3716 kcal/mol (3681.5550 without restraints) Performing minimization step: 4347. Total energy = 3683.0614 kcal/mol (3681.2455 without restraints) Performing minimization step: 4348. Total energy = 3682.7514 kcal/mol (3680.9361 without restraints) Performing minimization step: 4349. Total energy = 3682.4418 kcal/mol (3680.6270 without restraints) Performing minimization step: 4350. Total energy = 3682.1317 kcal/mol (3680.3177 without restraints) Performing minimization step: 4351. Total energy = 3681.8229 kcal/mol (3680.0095 without restraints) Performing minimization step: 4352. Total energy = 3681.5143 kcal/mol (3679.7015 without restraints) Performing minimization step: 4353. Total energy = 3681.2055 kcal/mol (3679.3934 without restraints) Performing minimization step: 4354. Total energy = 3680.8964 kcal/mol (3679.0849 without restraints) Performing minimization step: 4355. Total energy = 3680.5876 kcal/mol (3678.7767 without restraints) Performing minimization step: 4356. Total energy = 3680.2793 kcal/mol (3678.4691 without restraints) Performing minimization step: 4357. Total energy = 3679.9708 kcal/mol (3678.1613 without restraints) Performing minimization step: 4358. Total energy = 3679.6626 kcal/mol (3677.8538 without restraints) Performing minimization step: 4359. Total energy = 3679.3542 kcal/mol (3677.5461 without restraints) Performing minimization step: 4360. Total energy = 3679.0464 kcal/mol (3677.2388 without restraints) Performing minimization step: 4361. Total energy = 3678.7388 kcal/mol (3676.9319 without restraints) Performing minimization step: 4362. Total energy = 3678.4313 kcal/mol (3676.6250 without restraints) Performing minimization step: 4363. Total energy = 3678.1239 kcal/mol (3676.3181 without restraints) Performing minimization step: 4364. Total energy = 3677.8170 kcal/mol (3676.0122 without restraints) Performing minimization step: 4365. Total energy = 3677.5105 kcal/mol (3675.7062 without restraints) Performing minimization step: 4366. Total energy = 3677.2036 kcal/mol (3675.3999 without restraints) Performing minimization step: 4367. Total energy = 3676.8974 kcal/mol (3675.0945 without restraints) Performing minimization step: 4368. Total energy = 3676.5909 kcal/mol (3674.7885 without restraints) Performing minimization step: 4369. Total energy = 3676.2846 kcal/mol (3674.4829 without restraints) Performing minimization step: 4370. Total energy = 3675.9784 kcal/mol (3674.1773 without restraints) Performing minimization step: 4371. Total energy = 3675.6725 kcal/mol (3673.8722 without restraints) Performing minimization step: 4372. Total energy = 3675.3671 kcal/mol (3673.5673 without restraints) Performing minimization step: 4373. Total energy = 3675.0616 kcal/mol (3673.2626 without restraints) Performing minimization step: 4374. Total energy = 3674.7564 kcal/mol (3672.9579 without restraints) Performing minimization step: 4375. Total energy = 3674.4512 kcal/mol (3672.6533 without restraints) Performing minimization step: 4376. Total energy = 3674.1466 kcal/mol (3672.3495 without restraints) Performing minimization step: 4377. Total energy = 3673.8419 kcal/mol (3672.0454 without restraints) Performing minimization step: 4378. Total energy = 3673.5366 kcal/mol (3671.7405 without restraints) Performing minimization step: 4379. Total energy = 3673.2318 kcal/mol (3671.4365 without restraints) Performing minimization step: 4380. Total energy = 3672.9275 kcal/mol (3671.1329 without restraints) Performing minimization step: 4381. Total energy = 3672.6236 kcal/mol (3670.8296 without restraints) Performing minimization step: 4382. Total energy = 3672.3196 kcal/mol (3670.5261 without restraints) Performing minimization step: 4383. Total energy = 3672.0156 kcal/mol (3670.2228 without restraints) Performing minimization step: 4384. Total energy = 3671.7124 kcal/mol (3669.9206 without restraints) Performing minimization step: 4385. Total energy = 3671.4094 kcal/mol (3669.6179 without restraints) Performing minimization step: 4386. Total energy = 3671.1069 kcal/mol (3669.3162 without restraints) Performing minimization step: 4387. Total energy = 3670.8034 kcal/mol (3669.0132 without restraints) Performing minimization step: 4388. Total energy = 3670.5005 kcal/mol (3668.7111 without restraints) Performing minimization step: 4389. Total energy = 3670.1976 kcal/mol (3668.4089 without restraints) Performing minimization step: 4390. Total energy = 3669.8955 kcal/mol (3668.1075 without restraints) Performing minimization step: 4391. Total energy = 3669.5938 kcal/mol (3667.8062 without restraints) Performing minimization step: 4392. Total energy = 3669.2915 kcal/mol (3667.5048 without restraints) Performing minimization step: 4393. Total energy = 3668.9901 kcal/mol (3667.2038 without restraints) Performing minimization step: 4394. Total energy = 3668.6882 kcal/mol (3666.9024 without restraints) Performing minimization step: 4395. Total energy = 3668.3863 kcal/mol (3666.6012 without restraints) Performing minimization step: 4396. Total energy = 3668.0847 kcal/mol (3666.3005 without restraints) Performing minimization step: 4397. Total energy = 3667.7835 kcal/mol (3665.9998 without restraints) Performing minimization step: 4398. Total energy = 3667.4823 kcal/mol (3665.6991 without restraints) Performing minimization step: 4399. Total energy = 3667.1816 kcal/mol (3665.3992 without restraints) Performing minimization step: 4400. Total energy = 3666.8805 kcal/mol (3665.0986 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 3666.5802 kcal/mol (3664.7990 without restraints) Performing minimization step: 4402. Total energy = 3666.2796 kcal/mol (3664.4991 without restraints) Performing minimization step: 4403. Total energy = 3665.9793 kcal/mol (3664.1995 without restraints) Performing minimization step: 4404. Total energy = 3665.6793 kcal/mol (3663.9000 without restraints) Performing minimization step: 4405. Total energy = 3665.3792 kcal/mol (3663.6004 without restraints) Performing minimization step: 4406. Total energy = 3665.0792 kcal/mol (3663.3012 without restraints) Performing minimization step: 4407. Total energy = 3664.7792 kcal/mol (3663.0018 without restraints) Performing minimization step: 4408. Total energy = 3664.4799 kcal/mol (3662.7031 without restraints) Performing minimization step: 4409. Total energy = 3664.1805 kcal/mol (3662.4044 without restraints) Performing minimization step: 4410. Total energy = 3663.8811 kcal/mol (3662.1056 without restraints) Performing minimization step: 4411. Total energy = 3663.5820 kcal/mol (3661.8071 without restraints) Performing minimization step: 4412. Total energy = 3663.2831 kcal/mol (3661.5089 without restraints) Performing minimization step: 4413. Total energy = 3662.9845 kcal/mol (3661.2109 without restraints) Performing minimization step: 4414. Total energy = 3662.6859 kcal/mol (3660.9129 without restraints) Performing minimization step: 4415. Total energy = 3662.3884 kcal/mol (3660.6160 without restraints) Performing minimization step: 4416. Total energy = 3662.0906 kcal/mol (3660.3190 without restraints) Performing minimization step: 4417. Total energy = 3661.7924 kcal/mol (3660.0210 without restraints) Performing minimization step: 4418. Total energy = 3661.4944 kcal/mol (3659.7239 without restraints) Performing minimization step: 4419. Total energy = 3661.1967 kcal/mol (3659.4268 without restraints) Performing minimization step: 4420. Total energy = 3660.8997 kcal/mol (3659.1305 without restraints) Performing minimization step: 4421. Total energy = 3660.6025 kcal/mol (3658.8341 without restraints) Performing minimization step: 4422. Total energy = 3660.3058 kcal/mol (3658.5378 without restraints) Performing minimization step: 4423. Total energy = 3660.0085 kcal/mol (3658.2412 without restraints) Performing minimization step: 4424. Total energy = 3659.7119 kcal/mol (3657.9452 without restraints) Performing minimization step: 4425. Total energy = 3659.4151 kcal/mol (3657.6490 without restraints) Performing minimization step: 4426. Total energy = 3659.1187 kcal/mol (3657.3531 without restraints) Performing minimization step: 4427. Total energy = 3658.8223 kcal/mol (3657.0577 without restraints) Performing minimization step: 4428. Total energy = 3658.5268 kcal/mol (3656.7626 without restraints) Performing minimization step: 4429. Total energy = 3658.2312 kcal/mol (3656.4677 without restraints) Performing minimization step: 4430. Total energy = 3657.9354 kcal/mol (3656.1725 without restraints) Performing minimization step: 4431. Total energy = 3657.6396 kcal/mol (3655.8773 without restraints) Performing minimization step: 4432. Total energy = 3657.3441 kcal/mol (3655.5824 without restraints) Performing minimization step: 4433. Total energy = 3657.0489 kcal/mol (3655.2878 without restraints) Performing minimization step: 4434. Total energy = 3656.7537 kcal/mol (3654.9932 without restraints) Performing minimization step: 4435. Total energy = 3656.4587 kcal/mol (3654.6989 without restraints) Performing minimization step: 4436. Total energy = 3656.1645 kcal/mol (3654.4054 without restraints) Performing minimization step: 4437. Total energy = 3655.8701 kcal/mol (3654.1115 without restraints) Performing minimization step: 4438. Total energy = 3655.5759 kcal/mol (3653.8180 without restraints) Performing minimization step: 4439. Total energy = 3655.2816 kcal/mol (3653.5243 without restraints) Performing minimization step: 4440. Total energy = 3654.9873 kcal/mol (3653.2304 without restraints) Performing minimization step: 4441. Total energy = 3654.6934 kcal/mol (3652.9374 without restraints) Performing minimization step: 4442. Total energy = 3654.4001 kcal/mol (3652.6447 without restraints) Performing minimization step: 4443. Total energy = 3654.1067 kcal/mol (3652.3521 without restraints) Performing minimization step: 4444. Total energy = 3653.8133 kcal/mol (3652.0591 without restraints) Performing minimization step: 4445. Total energy = 3653.5201 kcal/mol (3651.7665 without restraints) Performing minimization step: 4446. Total energy = 3653.2269 kcal/mol (3651.4739 without restraints) Performing minimization step: 4447. Total energy = 3652.9346 kcal/mol (3651.1824 without restraints) Performing minimization step: 4448. Total energy = 3652.6421 kcal/mol (3650.8905 without restraints) Performing minimization step: 4449. Total energy = 3652.3500 kcal/mol (3650.5989 without restraints) Performing minimization step: 4450. Total energy = 3652.0575 kcal/mol (3650.3070 without restraints) Performing minimization step: 4451. Total energy = 3651.7652 kcal/mol (3650.0153 without restraints) Performing minimization step: 4452. Total energy = 3651.4730 kcal/mol (3649.7239 without restraints) Performing minimization step: 4453. Total energy = 3651.1817 kcal/mol (3649.4332 without restraints) Performing minimization step: 4454. Total energy = 3650.8900 kcal/mol (3649.1418 without restraints) Performing minimization step: 4455. Total energy = 3650.5977 kcal/mol (3648.8503 without restraints) Performing minimization step: 4456. Total energy = 3650.3063 kcal/mol (3648.5595 without restraints) Performing minimization step: 4457. Total energy = 3650.0155 kcal/mol (3648.2694 without restraints) Performing minimization step: 4458. Total energy = 3649.7243 kcal/mol (3647.9788 without restraints) Performing minimization step: 4459. Total energy = 3649.4332 kcal/mol (3647.6883 without restraints) Performing minimization step: 4460. Total energy = 3649.1424 kcal/mol (3647.3981 without restraints) Performing minimization step: 4461. Total energy = 3648.8519 kcal/mol (3647.1082 without restraints) Performing minimization step: 4462. Total energy = 3648.5614 kcal/mol (3646.8183 without restraints) Performing minimization step: 4463. Total energy = 3648.2713 kcal/mol (3646.5290 without restraints) Performing minimization step: 4464. Total energy = 3647.9812 kcal/mol (3646.2393 without restraints) Performing minimization step: 4465. Total energy = 3647.6912 kcal/mol (3645.9499 without restraints) Performing minimization step: 4466. Total energy = 3647.4016 kcal/mol (3645.6609 without restraints) Performing minimization step: 4467. Total energy = 3647.1119 kcal/mol (3645.3719 without restraints) Performing minimization step: 4468. Total energy = 3646.8227 kcal/mol (3645.0833 without restraints) Performing minimization step: 4469. Total energy = 3646.5333 kcal/mol (3644.7945 without restraints) Performing minimization step: 4470. Total energy = 3646.2441 kcal/mol (3644.5058 without restraints) Performing minimization step: 4471. Total energy = 3645.9554 kcal/mol (3644.2179 without restraints) Performing minimization step: 4472. Total energy = 3645.6665 kcal/mol (3643.9295 without restraints) Performing minimization step: 4473. Total energy = 3645.3776 kcal/mol (3643.6413 without restraints) Performing minimization step: 4474. Total energy = 3645.0890 kcal/mol (3643.3534 without restraints) Performing minimization step: 4475. Total energy = 3644.8008 kcal/mol (3643.0656 without restraints) Performing minimization step: 4476. Total energy = 3644.5126 kcal/mol (3642.7780 without restraints) Performing minimization step: 4477. Total energy = 3644.2251 kcal/mol (3642.4912 without restraints) Performing minimization step: 4478. Total energy = 3643.9372 kcal/mol (3642.2038 without restraints) Performing minimization step: 4479. Total energy = 3643.6492 kcal/mol (3641.9166 without restraints) Performing minimization step: 4480. Total energy = 3643.3618 kcal/mol (3641.6299 without restraints) Performing minimization step: 4481. Total energy = 3643.0742 kcal/mol (3641.3427 without restraints) Performing minimization step: 4482. Total energy = 3642.7874 kcal/mol (3641.0565 without restraints) Performing minimization step: 4483. Total energy = 3642.5001 kcal/mol (3640.7698 without restraints) Performing minimization step: 4484. Total energy = 3642.2131 kcal/mol (3640.4835 without restraints) Performing minimization step: 4485. Total energy = 3641.9262 kcal/mol (3640.1971 without restraints) Performing minimization step: 4486. Total energy = 3641.6397 kcal/mol (3639.9112 without restraints) Performing minimization step: 4487. Total energy = 3641.3534 kcal/mol (3639.6256 without restraints) Performing minimization step: 4488. Total energy = 3641.0673 kcal/mol (3639.3401 without restraints) Performing minimization step: 4489. Total energy = 3640.7813 kcal/mol (3639.0548 without restraints) Performing minimization step: 4490. Total energy = 3640.4956 kcal/mol (3638.7695 without restraints) Performing minimization step: 4491. Total energy = 3640.2095 kcal/mol (3638.4841 without restraints) Performing minimization step: 4492. Total energy = 3639.9234 kcal/mol (3638.1986 without restraints) Performing minimization step: 4493. Total energy = 3639.6379 kcal/mol (3637.9136 without restraints) Performing minimization step: 4494. Total energy = 3639.3523 kcal/mol (3637.6287 without restraints) Performing minimization step: 4495. Total energy = 3639.0674 kcal/mol (3637.3443 without restraints) Performing minimization step: 4496. Total energy = 3638.7830 kcal/mol (3637.0605 without restraints) Performing minimization step: 4497. Total energy = 3638.4980 kcal/mol (3636.7761 without restraints) Performing minimization step: 4498. Total energy = 3638.2131 kcal/mol (3636.4918 without restraints) Performing minimization step: 4499. Total energy = 3637.9283 kcal/mol (3636.2076 without restraints) Performing minimization step: 4500. Total energy = 3637.6438 kcal/mol (3635.9237 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 3637.3596 kcal/mol (3635.6403 without restraints) Performing minimization step: 4502. Total energy = 3637.0754 kcal/mol (3635.3566 without restraints) Performing minimization step: 4503. Total energy = 3636.7918 kcal/mol (3635.0736 without restraints) Performing minimization step: 4504. Total energy = 3636.5084 kcal/mol (3634.7908 without restraints) Performing minimization step: 4505. Total energy = 3636.2246 kcal/mol (3634.5076 without restraints) Performing minimization step: 4506. Total energy = 3635.9411 kcal/mol (3634.2247 without restraints) Performing minimization step: 4507. Total energy = 3635.6579 kcal/mol (3633.9420 without restraints) Performing minimization step: 4508. Total energy = 3635.3748 kcal/mol (3633.6596 without restraints) Performing minimization step: 4509. Total energy = 3635.0920 kcal/mol (3633.3774 without restraints) Performing minimization step: 4510. Total energy = 3634.8092 kcal/mol (3633.0952 without restraints) Performing minimization step: 4511. Total energy = 3634.5265 kcal/mol (3632.8131 without restraints) Performing minimization step: 4512. Total energy = 3634.2442 kcal/mol (3632.5317 without restraints) Performing minimization step: 4513. Total energy = 3633.9615 kcal/mol (3632.2492 without restraints) Performing minimization step: 4514. Total energy = 3633.6790 kcal/mol (3631.9673 without restraints) Performing minimization step: 4515. Total energy = 3633.3966 kcal/mol (3631.6855 without restraints) Performing minimization step: 4516. Total energy = 3633.1145 kcal/mol (3631.4040 without restraints) Performing minimization step: 4517. Total energy = 3632.8325 kcal/mol (3631.1227 without restraints) Performing minimization step: 4518. Total energy = 3632.5511 kcal/mol (3630.8418 without restraints) Performing minimization step: 4519. Total energy = 3632.2695 kcal/mol (3630.5606 without restraints) Performing minimization step: 4520. Total energy = 3631.9879 kcal/mol (3630.2798 without restraints) Performing minimization step: 4521. Total energy = 3631.7067 kcal/mol (3629.9989 without restraints) Performing minimization step: 4522. Total energy = 3631.4252 kcal/mol (3629.7184 without restraints) Performing minimization step: 4523. Total energy = 3631.1440 kcal/mol (3629.4376 without restraints) Performing minimization step: 4524. Total energy = 3630.8637 kcal/mol (3629.1579 without restraints) Performing minimization step: 4525. Total energy = 3630.5829 kcal/mol (3628.8777 without restraints) Performing minimization step: 4526. Total energy = 3630.3025 kcal/mol (3628.5980 without restraints) Performing minimization step: 4527. Total energy = 3630.0222 kcal/mol (3628.3183 without restraints) Performing minimization step: 4528. Total energy = 3629.7422 kcal/mol (3628.0388 without restraints) Performing minimization step: 4529. Total energy = 3629.4619 kcal/mol (3627.7591 without restraints) Performing minimization step: 4530. Total energy = 3629.1818 kcal/mol (3627.4795 without restraints) Performing minimization step: 4531. Total energy = 3628.9021 kcal/mol (3627.2005 without restraints) Performing minimization step: 4532. Total energy = 3628.6225 kcal/mol (3626.9214 without restraints) Performing minimization step: 4533. Total energy = 3628.3430 kcal/mol (3626.6426 without restraints) Performing minimization step: 4534. Total energy = 3628.0637 kcal/mol (3626.3639 without restraints) Performing minimization step: 4535. Total energy = 3627.7847 kcal/mol (3626.0856 without restraints) Performing minimization step: 4536. Total energy = 3627.5069 kcal/mol (3625.8082 without restraints) Performing minimization step: 4537. Total energy = 3627.2281 kcal/mol (3625.5300 without restraints) Performing minimization step: 4538. Total energy = 3626.9493 kcal/mol (3625.2518 without restraints) Performing minimization step: 4539. Total energy = 3626.6704 kcal/mol (3624.9733 without restraints) Performing minimization step: 4540. Total energy = 3626.3918 kcal/mol (3624.6957 without restraints) Performing minimization step: 4541. Total energy = 3626.1138 kcal/mol (3624.4181 without restraints) Performing minimization step: 4542. Total energy = 3625.8353 kcal/mol (3624.1402 without restraints) Performing minimization step: 4543. Total energy = 3625.5571 kcal/mol (3623.8624 without restraints) Performing minimization step: 4544. Total energy = 3625.2791 kcal/mol (3623.5851 without restraints) Performing minimization step: 4545. Total energy = 3625.0015 kcal/mol (3623.3081 without restraints) Performing minimization step: 4546. Total energy = 3624.7243 kcal/mol (3623.0317 without restraints) Performing minimization step: 4547. Total energy = 3624.4478 kcal/mol (3622.7555 without restraints) Performing minimization step: 4548. Total energy = 3624.1704 kcal/mol (3622.4787 without restraints) Performing minimization step: 4549. Total energy = 3623.8932 kcal/mol (3622.2022 without restraints) Performing minimization step: 4550. Total energy = 3623.6163 kcal/mol (3621.9259 without restraints) Performing minimization step: 4551. Total energy = 3623.3396 kcal/mol (3621.6497 without restraints) Performing minimization step: 4552. Total energy = 3623.0630 kcal/mol (3621.3737 without restraints) Performing minimization step: 4553. Total energy = 3622.7860 kcal/mol (3621.0972 without restraints) Performing minimization step: 4554. Total energy = 3622.5099 kcal/mol (3620.8218 without restraints) Performing minimization step: 4555. Total energy = 3622.2332 kcal/mol (3620.5456 without restraints) Performing minimization step: 4556. Total energy = 3621.9568 kcal/mol (3620.2698 without restraints) Performing minimization step: 4557. Total energy = 3621.6817 kcal/mol (3619.9953 without restraints) Performing minimization step: 4558. Total energy = 3621.4058 kcal/mol (3619.7201 without restraints) Performing minimization step: 4559. Total energy = 3621.1302 kcal/mol (3619.4449 without restraints) Performing minimization step: 4560. Total energy = 3620.8548 kcal/mol (3619.1700 without restraints) Performing minimization step: 4561. Total energy = 3620.5789 kcal/mol (3618.8948 without restraints) Performing minimization step: 4562. Total energy = 3620.3036 kcal/mol (3618.6200 without restraints) Performing minimization step: 4563. Total energy = 3620.0283 kcal/mol (3618.3453 without restraints) Performing minimization step: 4564. Total energy = 3619.7530 kcal/mol (3618.0706 without restraints) Performing minimization step: 4565. Total energy = 3619.4781 kcal/mol (3617.7963 without restraints) Performing minimization step: 4566. Total energy = 3619.2035 kcal/mol (3617.5222 without restraints) Performing minimization step: 4567. Total energy = 3618.9286 kcal/mol (3617.2479 without restraints) Performing minimization step: 4568. Total energy = 3618.6542 kcal/mol (3616.9742 without restraints) Performing minimization step: 4569. Total energy = 3618.3801 kcal/mol (3616.7006 without restraints) Performing minimization step: 4570. Total energy = 3618.1059 kcal/mol (3616.4269 without restraints) Performing minimization step: 4571. Total energy = 3617.8311 kcal/mol (3616.1528 without restraints) Performing minimization step: 4572. Total energy = 3617.5573 kcal/mol (3615.8794 without restraints) Performing minimization step: 4573. Total energy = 3617.2845 kcal/mol (3615.6073 without restraints) Performing minimization step: 4574. Total energy = 3617.0111 kcal/mol (3615.3345 without restraints) Performing minimization step: 4575. Total energy = 3616.7376 kcal/mol (3615.0615 without restraints) Performing minimization step: 4576. Total energy = 3616.4643 kcal/mol (3614.7889 without restraints) Performing minimization step: 4577. Total energy = 3616.1910 kcal/mol (3614.5160 without restraints) Performing minimization step: 4578. Total energy = 3615.9184 kcal/mol (3614.2440 without restraints) Performing minimization step: 4579. Total energy = 3615.6458 kcal/mol (3613.9720 without restraints) Performing minimization step: 4580. Total energy = 3615.3737 kcal/mol (3613.7004 without restraints) Performing minimization step: 4581. Total energy = 3615.1012 kcal/mol (3613.4286 without restraints) Performing minimization step: 4582. Total energy = 3614.8287 kcal/mol (3613.1566 without restraints) Performing minimization step: 4583. Total energy = 3614.5562 kcal/mol (3612.8846 without restraints) Performing minimization step: 4584. Total energy = 3614.2839 kcal/mol (3612.6130 without restraints) Performing minimization step: 4585. Total energy = 3614.0124 kcal/mol (3612.3420 without restraints) Performing minimization step: 4586. Total energy = 3613.7408 kcal/mol (3612.0710 without restraints) Performing minimization step: 4587. Total energy = 3613.4698 kcal/mol (3611.8005 without restraints) Performing minimization step: 4588. Total energy = 3613.1984 kcal/mol (3611.5299 without restraints) Performing minimization step: 4589. Total energy = 3612.9272 kcal/mol (3611.2592 without restraints) Performing minimization step: 4590. Total energy = 3612.6559 kcal/mol (3610.9884 without restraints) Performing minimization step: 4591. Total energy = 3612.3850 kcal/mol (3610.7180 without restraints) Performing minimization step: 4592. Total energy = 3612.1141 kcal/mol (3610.4477 without restraints) Performing minimization step: 4593. Total energy = 3611.8434 kcal/mol (3610.1778 without restraints) Performing minimization step: 4594. Total energy = 3611.5727 kcal/mol (3609.9074 without restraints) Performing minimization step: 4595. Total energy = 3611.3021 kcal/mol (3609.6373 without restraints) Performing minimization step: 4596. Total energy = 3611.0317 kcal/mol (3609.3676 without restraints) Performing minimization step: 4597. Total energy = 3610.7616 kcal/mol (3609.0981 without restraints) Performing minimization step: 4598. Total energy = 3610.4917 kcal/mol (3608.8286 without restraints) Performing minimization step: 4599. Total energy = 3610.2215 kcal/mol (3608.5591 without restraints) Performing minimization step: 4600. Total energy = 3609.9517 kcal/mol (3608.2898 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 3609.6824 kcal/mol (3608.0210 without restraints) Performing minimization step: 4602. Total energy = 3609.4131 kcal/mol (3607.7523 without restraints) Performing minimization step: 4603. Total energy = 3609.1436 kcal/mol (3607.4835 without restraints) Performing minimization step: 4604. Total energy = 3608.8748 kcal/mol (3607.2153 without restraints) Performing minimization step: 4605. Total energy = 3608.6073 kcal/mol (3606.9483 without restraints) Performing minimization step: 4606. Total energy = 3608.3383 kcal/mol (3606.6797 without restraints) Performing minimization step: 4607. Total energy = 3608.0692 kcal/mol (3606.4112 without restraints) Performing minimization step: 4608. Total energy = 3607.8006 kcal/mol (3606.1432 without restraints) Performing minimization step: 4609. Total energy = 3607.5320 kcal/mol (3605.8752 without restraints) Performing minimization step: 4610. Total energy = 3607.2634 kcal/mol (3605.6071 without restraints) Performing minimization step: 4611. Total energy = 3606.9953 kcal/mol (3605.3398 without restraints) Performing minimization step: 4612. Total energy = 3606.7275 kcal/mol (3605.0723 without restraints) Performing minimization step: 4613. Total energy = 3606.4596 kcal/mol (3604.8051 without restraints) Performing minimization step: 4614. Total energy = 3606.1917 kcal/mol (3604.5376 without restraints) Performing minimization step: 4615. Total energy = 3605.9239 kcal/mol (3604.2704 without restraints) Performing minimization step: 4616. Total energy = 3605.6562 kcal/mol (3604.0032 without restraints) Performing minimization step: 4617. Total energy = 3605.3888 kcal/mol (3603.7365 without restraints) Performing minimization step: 4618. Total energy = 3605.1217 kcal/mol (3603.4698 without restraints) Performing minimization step: 4619. Total energy = 3604.8545 kcal/mol (3603.2035 without restraints) Performing minimization step: 4620. Total energy = 3604.5876 kcal/mol (3602.9370 without restraints) Performing minimization step: 4621. Total energy = 3604.3204 kcal/mol (3602.6702 without restraints) Performing minimization step: 4622. Total energy = 3604.0539 kcal/mol (3602.4043 without restraints) Performing minimization step: 4623. Total energy = 3603.7873 kcal/mol (3602.1381 without restraints) Performing minimization step: 4624. Total energy = 3603.5207 kcal/mol (3601.8723 without restraints) Performing minimization step: 4625. Total energy = 3603.2544 kcal/mol (3601.6065 without restraints) Performing minimization step: 4626. Total energy = 3602.9882 kcal/mol (3601.3408 without restraints) Performing minimization step: 4627. Total energy = 3602.7219 kcal/mol (3601.0750 without restraints) Performing minimization step: 4628. Total energy = 3602.4561 kcal/mol (3600.8098 without restraints) Performing minimization step: 4629. Total energy = 3602.1901 kcal/mol (3600.5443 without restraints) Performing minimization step: 4630. Total energy = 3601.9243 kcal/mol (3600.2790 without restraints) Performing minimization step: 4631. Total energy = 3601.6585 kcal/mol (3600.0138 without restraints) Performing minimization step: 4632. Total energy = 3601.3933 kcal/mol (3599.7494 without restraints) Performing minimization step: 4633. Total energy = 3601.1279 kcal/mol (3599.4843 without restraints) Performing minimization step: 4634. Total energy = 3600.8632 kcal/mol (3599.2203 without restraints) Performing minimization step: 4635. Total energy = 3600.5983 kcal/mol (3598.9558 without restraints) Performing minimization step: 4636. Total energy = 3600.3330 kcal/mol (3598.6910 without restraints) Performing minimization step: 4637. Total energy = 3600.0681 kcal/mol (3598.4269 without restraints) Performing minimization step: 4638. Total energy = 3599.8034 kcal/mol (3598.1625 without restraints) Performing minimization step: 4639. Total energy = 3599.5386 kcal/mol (3597.8983 without restraints) Performing minimization step: 4640. Total energy = 3599.2744 kcal/mol (3597.6347 without restraints) Performing minimization step: 4641. Total energy = 3599.0103 kcal/mol (3597.3710 without restraints) Performing minimization step: 4642. Total energy = 3598.7462 kcal/mol (3597.1076 without restraints) Performing minimization step: 4643. Total energy = 3598.4825 kcal/mol (3596.8444 without restraints) Performing minimization step: 4644. Total energy = 3598.2185 kcal/mol (3596.5810 without restraints) Performing minimization step: 4645. Total energy = 3597.9545 kcal/mol (3596.3174 without restraints) Performing minimization step: 4646. Total energy = 3597.6908 kcal/mol (3596.0543 without restraints) Performing minimization step: 4647. Total energy = 3597.4268 kcal/mol (3595.7908 without restraints) Performing minimization step: 4648. Total energy = 3597.1634 kcal/mol (3595.5280 without restraints) Performing minimization step: 4649. Total energy = 3596.9001 kcal/mol (3595.2652 without restraints) Performing minimization step: 4650. Total energy = 3596.6364 kcal/mol (3595.0021 without restraints) Performing minimization step: 4651. Total energy = 3596.3739 kcal/mol (3594.7401 without restraints) Performing minimization step: 4652. Total energy = 3596.1111 kcal/mol (3594.4778 without restraints) Performing minimization step: 4653. Total energy = 3595.8482 kcal/mol (3594.2155 without restraints) Performing minimization step: 4654. Total energy = 3595.5857 kcal/mol (3593.9535 without restraints) Performing minimization step: 4655. Total energy = 3595.3229 kcal/mol (3593.6913 without restraints) Performing minimization step: 4656. Total energy = 3595.0604 kcal/mol (3593.4293 without restraints) Performing minimization step: 4657. Total energy = 3594.7981 kcal/mol (3593.1676 without restraints) Performing minimization step: 4658. Total energy = 3594.5364 kcal/mol (3592.9065 without restraints) Performing minimization step: 4659. Total energy = 3594.2749 kcal/mol (3592.6456 without restraints) Performing minimization step: 4660. Total energy = 3594.0135 kcal/mol (3592.3846 without restraints) Performing minimization step: 4661. Total energy = 3593.7521 kcal/mol (3592.1237 without restraints) Performing minimization step: 4662. Total energy = 3593.4907 kcal/mol (3591.8630 without restraints) Performing minimization step: 4663. Total energy = 3593.2294 kcal/mol (3591.6021 without restraints) Performing minimization step: 4664. Total energy = 3592.9687 kcal/mol (3591.3419 without restraints) Performing minimization step: 4665. Total energy = 3592.7078 kcal/mol (3591.0816 without restraints) Performing minimization step: 4666. Total energy = 3592.4468 kcal/mol (3590.8213 without restraints) Performing minimization step: 4667. Total energy = 3592.1860 kcal/mol (3590.5608 without restraints) Performing minimization step: 4668. Total energy = 3591.9255 kcal/mol (3590.3011 without restraints) Performing minimization step: 4669. Total energy = 3591.6650 kcal/mol (3590.0409 without restraints) Performing minimization step: 4670. Total energy = 3591.4047 kcal/mol (3589.7812 without restraints) Performing minimization step: 4671. Total energy = 3591.1446 kcal/mol (3589.5217 without restraints) Performing minimization step: 4672. Total energy = 3590.8846 kcal/mol (3589.2623 without restraints) Performing minimization step: 4673. Total energy = 3590.6246 kcal/mol (3589.0026 without restraints) Performing minimization step: 4674. Total energy = 3590.3647 kcal/mol (3588.7432 without restraints) Performing minimization step: 4675. Total energy = 3590.1052 kcal/mol (3588.4843 without restraints) Performing minimization step: 4676. Total energy = 3589.8454 kcal/mol (3588.2251 without restraints) Performing minimization step: 4677. Total energy = 3589.5857 kcal/mol (3587.9659 without restraints) Performing minimization step: 4678. Total energy = 3589.3260 kcal/mol (3587.7067 without restraints) Performing minimization step: 4679. Total energy = 3589.0664 kcal/mol (3587.4476 without restraints) Performing minimization step: 4680. Total energy = 3588.8073 kcal/mol (3587.1891 without restraints) Performing minimization step: 4681. Total energy = 3588.5483 kcal/mol (3586.9305 without restraints) Performing minimization step: 4682. Total energy = 3588.2892 kcal/mol (3586.6721 without restraints) Performing minimization step: 4683. Total energy = 3588.0302 kcal/mol (3586.4134 without restraints) Performing minimization step: 4684. Total energy = 3587.7710 kcal/mol (3586.1549 without restraints) Performing minimization step: 4685. Total energy = 3587.5130 kcal/mol (3585.8974 without restraints) Performing minimization step: 4686. Total energy = 3587.2550 kcal/mol (3585.6401 without restraints) Performing minimization step: 4687. Total energy = 3586.9967 kcal/mol (3585.3822 without restraints) Performing minimization step: 4688. Total energy = 3586.7385 kcal/mol (3585.1245 without restraints) Performing minimization step: 4689. Total energy = 3586.4809 kcal/mol (3584.8676 without restraints) Performing minimization step: 4690. Total energy = 3586.2230 kcal/mol (3584.6099 without restraints) Performing minimization step: 4691. Total energy = 3585.9650 kcal/mol (3584.3525 without restraints) Performing minimization step: 4692. Total energy = 3585.7073 kcal/mol (3584.0956 without restraints) Performing minimization step: 4693. Total energy = 3585.4503 kcal/mol (3583.8389 without restraints) Performing minimization step: 4694. Total energy = 3585.1931 kcal/mol (3583.5824 without restraints) Performing minimization step: 4695. Total energy = 3584.9365 kcal/mol (3583.3263 without restraints) Performing minimization step: 4696. Total energy = 3584.6799 kcal/mol (3583.0701 without restraints) Performing minimization step: 4697. Total energy = 3584.4231 kcal/mol (3582.8138 without restraints) Performing minimization step: 4698. Total energy = 3584.1659 kcal/mol (3582.5570 without restraints) Performing minimization step: 4699. Total energy = 3583.9086 kcal/mol (3582.3004 without restraints) Performing minimization step: 4700. Total energy = 3583.6518 kcal/mol (3582.0441 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 3583.3949 kcal/mol (3581.7877 without restraints) Performing minimization step: 4702. Total energy = 3583.1383 kcal/mol (3581.5316 without restraints) Performing minimization step: 4703. Total energy = 3582.8818 kcal/mol (3581.2757 without restraints) Performing minimization step: 4704. Total energy = 3582.6255 kcal/mol (3581.0199 without restraints) Performing minimization step: 4705. Total energy = 3582.3690 kcal/mol (3580.7639 without restraints) Performing minimization step: 4706. Total energy = 3582.1129 kcal/mol (3580.5083 without restraints) Performing minimization step: 4707. Total energy = 3581.8578 kcal/mol (3580.2538 without restraints) Performing minimization step: 4708. Total energy = 3581.6022 kcal/mol (3579.9986 without restraints) Performing minimization step: 4709. Total energy = 3581.3464 kcal/mol (3579.7434 without restraints) Performing minimization step: 4710. Total energy = 3581.0908 kcal/mol (3579.4883 without restraints) Performing minimization step: 4711. Total energy = 3580.8355 kcal/mol (3579.2335 without restraints) Performing minimization step: 4712. Total energy = 3580.5803 kcal/mol (3578.9788 without restraints) Performing minimization step: 4713. Total energy = 3580.3256 kcal/mol (3578.7248 without restraints) Performing minimization step: 4714. Total energy = 3580.0706 kcal/mol (3578.4702 without restraints) Performing minimization step: 4715. Total energy = 3579.8157 kcal/mol (3578.2157 without restraints) Performing minimization step: 4716. Total energy = 3579.5607 kcal/mol (3577.9614 without restraints) Performing minimization step: 4717. Total energy = 3579.3059 kcal/mol (3577.7070 without restraints) Performing minimization step: 4718. Total energy = 3579.0515 kcal/mol (3577.4531 without restraints) Performing minimization step: 4719. Total energy = 3578.7971 kcal/mol (3577.1993 without restraints) Performing minimization step: 4720. Total energy = 3578.5429 kcal/mol (3576.9456 without restraints) Performing minimization step: 4721. Total energy = 3578.2891 kcal/mol (3576.6922 without restraints) Performing minimization step: 4722. Total energy = 3578.0352 kcal/mol (3576.4388 without restraints) Performing minimization step: 4723. Total energy = 3577.7811 kcal/mol (3576.1853 without restraints) Performing minimization step: 4724. Total energy = 3577.5273 kcal/mol (3575.9321 without restraints) Performing minimization step: 4725. Total energy = 3577.2742 kcal/mol (3575.6794 without restraints) Performing minimization step: 4726. Total energy = 3577.0207 kcal/mol (3575.4266 without restraints) Performing minimization step: 4727. Total energy = 3576.7673 kcal/mol (3575.1735 without restraints) Performing minimization step: 4728. Total energy = 3576.5139 kcal/mol (3574.9206 without restraints) Performing minimization step: 4729. Total energy = 3576.2606 kcal/mol (3574.6679 without restraints) Performing minimization step: 4730. Total energy = 3576.0075 kcal/mol (3574.4156 without restraints) Performing minimization step: 4731. Total energy = 3575.7552 kcal/mol (3574.1635 without restraints) Performing minimization step: 4732. Total energy = 3575.5024 kcal/mol (3573.9114 without restraints) Performing minimization step: 4733. Total energy = 3575.2504 kcal/mol (3573.6596 without restraints) Performing minimization step: 4734. Total energy = 3574.9979 kcal/mol (3573.4077 without restraints) Performing minimization step: 4735. Total energy = 3574.7453 kcal/mol (3573.1555 without restraints) Performing minimization step: 4736. Total energy = 3574.4928 kcal/mol (3572.9036 without restraints) Performing minimization step: 4737. Total energy = 3574.2412 kcal/mol (3572.6525 without restraints) Performing minimization step: 4738. Total energy = 3573.9893 kcal/mol (3572.4011 without restraints) Performing minimization step: 4739. Total energy = 3573.7378 kcal/mol (3572.1503 without restraints) Performing minimization step: 4740. Total energy = 3573.4862 kcal/mol (3571.8990 without restraints) Performing minimization step: 4741. Total energy = 3573.2342 kcal/mol (3571.6474 without restraints) Performing minimization step: 4742. Total energy = 3572.9824 kcal/mol (3571.3962 without restraints) Performing minimization step: 4743. Total energy = 3572.7307 kcal/mol (3571.1451 without restraints) Performing minimization step: 4744. Total energy = 3572.4794 kcal/mol (3570.8942 without restraints) Performing minimization step: 4745. Total energy = 3572.2280 kcal/mol (3570.6433 without restraints) Performing minimization step: 4746. Total energy = 3571.9768 kcal/mol (3570.3927 without restraints) Performing minimization step: 4747. Total energy = 3571.7258 kcal/mol (3570.1422 without restraints) Performing minimization step: 4748. Total energy = 3571.4745 kcal/mol (3569.8913 without restraints) Performing minimization step: 4749. Total energy = 3571.2237 kcal/mol (3569.6411 without restraints) Performing minimization step: 4750. Total energy = 3570.9732 kcal/mol (3569.3912 without restraints) Performing minimization step: 4751. Total energy = 3570.7229 kcal/mol (3569.1413 without restraints) Performing minimization step: 4752. Total energy = 3570.4723 kcal/mol (3568.8912 without restraints) Performing minimization step: 4753. Total energy = 3570.2221 kcal/mol (3568.6414 without restraints) Performing minimization step: 4754. Total energy = 3569.9718 kcal/mol (3568.3917 without restraints) Performing minimization step: 4755. Total energy = 3569.7216 kcal/mol (3568.1419 without restraints) Performing minimization step: 4756. Total energy = 3569.4716 kcal/mol (3567.8925 without restraints) Performing minimization step: 4757. Total energy = 3569.2217 kcal/mol (3567.6430 without restraints) Performing minimization step: 4758. Total energy = 3568.9728 kcal/mol (3567.3947 without restraints) Performing minimization step: 4759. Total energy = 3568.7233 kcal/mol (3567.1456 without restraints) Performing minimization step: 4760. Total energy = 3568.4736 kcal/mol (3566.8965 without restraints) Performing minimization step: 4761. Total energy = 3568.2242 kcal/mol (3566.6475 without restraints) Performing minimization step: 4762. Total energy = 3567.9750 kcal/mol (3566.3989 without restraints) Performing minimization step: 4763. Total energy = 3567.7259 kcal/mol (3566.1502 without restraints) Performing minimization step: 4764. Total energy = 3567.4771 kcal/mol (3565.9019 without restraints) Performing minimization step: 4765. Total energy = 3567.2278 kcal/mol (3565.6531 without restraints) Performing minimization step: 4766. Total energy = 3566.9785 kcal/mol (3565.4042 without restraints) Performing minimization step: 4767. Total energy = 3566.7297 kcal/mol (3565.1561 without restraints) Performing minimization step: 4768. Total energy = 3566.4818 kcal/mol (3564.9085 without restraints) Performing minimization step: 4769. Total energy = 3566.2334 kcal/mol (3564.6606 without restraints) Performing minimization step: 4770. Total energy = 3565.9854 kcal/mol (3564.4131 without restraints) Performing minimization step: 4771. Total energy = 3565.7370 kcal/mol (3564.1652 without restraints) Performing minimization step: 4772. Total energy = 3565.4894 kcal/mol (3563.9181 without restraints) Performing minimization step: 4773. Total energy = 3565.2413 kcal/mol (3563.6706 without restraints) Performing minimization step: 4774. Total energy = 3564.9933 kcal/mol (3563.4230 without restraints) Performing minimization step: 4775. Total energy = 3564.7453 kcal/mol (3563.1755 without restraints) Performing minimization step: 4776. Total energy = 3564.4977 kcal/mol (3562.9284 without restraints) Performing minimization step: 4777. Total energy = 3564.2506 kcal/mol (3562.6817 without restraints) Performing minimization step: 4778. Total energy = 3564.0035 kcal/mol (3562.4352 without restraints) Performing minimization step: 4779. Total energy = 3563.7558 kcal/mol (3562.1880 without restraints) Performing minimization step: 4780. Total energy = 3563.5090 kcal/mol (3561.9415 without restraints) Performing minimization step: 4781. Total energy = 3563.2621 kcal/mol (3561.6953 without restraints) Performing minimization step: 4782. Total energy = 3563.0155 kcal/mol (3561.4494 without restraints) Performing minimization step: 4783. Total energy = 3562.7688 kcal/mol (3561.2030 without restraints) Performing minimization step: 4784. Total energy = 3562.5223 kcal/mol (3560.9572 without restraints) Performing minimization step: 4785. Total energy = 3562.2759 kcal/mol (3560.7111 without restraints) Performing minimization step: 4786. Total energy = 3562.0296 kcal/mol (3560.4651 without restraints) Performing minimization step: 4787. Total energy = 3561.7832 kcal/mol (3560.2193 without restraints) Performing minimization step: 4788. Total energy = 3561.5368 kcal/mol (3559.9733 without restraints) Performing minimization step: 4789. Total energy = 3561.2909 kcal/mol (3559.7281 without restraints) Performing minimization step: 4790. Total energy = 3561.0447 kcal/mol (3559.4823 without restraints) Performing minimization step: 4791. Total energy = 3560.7989 kcal/mol (3559.2369 without restraints) Performing minimization step: 4792. Total energy = 3560.5529 kcal/mol (3558.9914 without restraints) Performing minimization step: 4793. Total energy = 3560.3068 kcal/mol (3558.7458 without restraints) Performing minimization step: 4794. Total energy = 3560.0611 kcal/mol (3558.5006 without restraints) Performing minimization step: 4795. Total energy = 3559.8153 kcal/mol (3558.2552 without restraints) Performing minimization step: 4796. Total energy = 3559.5697 kcal/mol (3558.0101 without restraints) Performing minimization step: 4797. Total energy = 3559.3245 kcal/mol (3557.7654 without restraints) Performing minimization step: 4798. Total energy = 3559.0792 kcal/mol (3557.5205 without restraints) Performing minimization step: 4799. Total energy = 3558.8340 kcal/mol (3557.2758 without restraints) Performing minimization step: 4800. Total energy = 3558.5885 kcal/mol (3557.0307 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 3558.3436 kcal/mol (3556.7863 without restraints) Performing minimization step: 4802. Total energy = 3558.0990 kcal/mol (3556.5423 without restraints) Performing minimization step: 4803. Total energy = 3557.8544 kcal/mol (3556.2982 without restraints) Performing minimization step: 4804. Total energy = 3557.6098 kcal/mol (3556.0540 without restraints) Performing minimization step: 4805. Total energy = 3557.3655 kcal/mol (3555.8102 without restraints) Performing minimization step: 4806. Total energy = 3557.1211 kcal/mol (3555.5663 without restraints) Performing minimization step: 4807. Total energy = 3556.8764 kcal/mol (3555.3222 without restraints) Performing minimization step: 4808. Total energy = 3556.6326 kcal/mol (3555.0786 without restraints) Performing minimization step: 4809. Total energy = 3556.3884 kcal/mol (3554.8350 without restraints) Performing minimization step: 4810. Total energy = 3556.1443 kcal/mol (3554.5913 without restraints) Performing minimization step: 4811. Total energy = 3555.9011 kcal/mol (3554.3487 without restraints) Performing minimization step: 4812. Total energy = 3555.6573 kcal/mol (3554.1054 without restraints) Performing minimization step: 4813. Total energy = 3555.4136 kcal/mol (3553.8621 without restraints) Performing minimization step: 4814. Total energy = 3555.1703 kcal/mol (3553.6192 without restraints) Performing minimization step: 4815. Total energy = 3554.9274 kcal/mol (3553.3770 without restraints) Performing minimization step: 4816. Total energy = 3554.6849 kcal/mol (3553.1348 without restraints) Performing minimization step: 4817. Total energy = 3554.4419 kcal/mol (3552.8923 without restraints) Performing minimization step: 4818. Total energy = 3554.1991 kcal/mol (3552.6500 without restraints) Performing minimization step: 4819. Total energy = 3553.9561 kcal/mol (3552.4074 without restraints) Performing minimization step: 4820. Total energy = 3553.7140 kcal/mol (3552.1659 without restraints) Performing minimization step: 4821. Total energy = 3553.4714 kcal/mol (3551.9236 without restraints) Performing minimization step: 4822. Total energy = 3553.2277 kcal/mol (3551.6804 without restraints) Performing minimization step: 4823. Total energy = 3552.9850 kcal/mol (3551.4382 without restraints) Performing minimization step: 4824. Total energy = 3552.7432 kcal/mol (3551.1968 without restraints) Performing minimization step: 4825. Total energy = 3552.5013 kcal/mol (3550.9555 without restraints) Performing minimization step: 4826. Total energy = 3552.2592 kcal/mol (3550.7139 without restraints) Performing minimization step: 4827. Total energy = 3552.0171 kcal/mol (3550.4722 without restraints) Performing minimization step: 4828. Total energy = 3551.7754 kcal/mol (3550.2310 without restraints) Performing minimization step: 4829. Total energy = 3551.5336 kcal/mol (3549.9896 without restraints) Performing minimization step: 4830. Total energy = 3551.2919 kcal/mol (3549.7482 without restraints) Performing minimization step: 4831. Total energy = 3551.0500 kcal/mol (3549.5069 without restraints) Performing minimization step: 4832. Total energy = 3550.8083 kcal/mol (3549.2657 without restraints) Performing minimization step: 4833. Total energy = 3550.5669 kcal/mol (3549.0249 without restraints) Performing minimization step: 4834. Total energy = 3550.3258 kcal/mol (3548.7841 without restraints) Performing minimization step: 4835. Total energy = 3550.0849 kcal/mol (3548.5437 without restraints) Performing minimization step: 4836. Total energy = 3549.8439 kcal/mol (3548.3031 without restraints) Performing minimization step: 4837. Total energy = 3549.6026 kcal/mol (3548.0623 without restraints) Performing minimization step: 4838. Total energy = 3549.3614 kcal/mol (3547.8216 without restraints) Performing minimization step: 4839. Total energy = 3549.1204 kcal/mol (3547.5810 without restraints) Performing minimization step: 4840. Total energy = 3548.8798 kcal/mol (3547.3411 without restraints) Performing minimization step: 4841. Total energy = 3548.6396 kcal/mol (3547.1012 without restraints) Performing minimization step: 4842. Total energy = 3548.3995 kcal/mol (3546.8615 without restraints) Performing minimization step: 4843. Total energy = 3548.1594 kcal/mol (3546.6219 without restraints) Performing minimization step: 4844. Total energy = 3547.9194 kcal/mol (3546.3825 without restraints) Performing minimization step: 4845. Total energy = 3547.6793 kcal/mol (3546.1427 without restraints) Performing minimization step: 4846. Total energy = 3547.4392 kcal/mol (3545.9030 without restraints) Performing minimization step: 4847. Total energy = 3547.1989 kcal/mol (3545.6632 without restraints) Performing minimization step: 4848. Total energy = 3546.9592 kcal/mol (3545.4239 without restraints) Performing minimization step: 4849. Total energy = 3546.7195 kcal/mol (3545.1848 without restraints) Performing minimization step: 4850. Total energy = 3546.4801 kcal/mol (3544.9458 without restraints) Performing minimization step: 4851. Total energy = 3546.2409 kcal/mol (3544.7071 without restraints) Performing minimization step: 4852. Total energy = 3546.0016 kcal/mol (3544.4681 without restraints) Performing minimization step: 4853. Total energy = 3545.7628 kcal/mol (3544.2299 without restraints) Performing minimization step: 4854. Total energy = 3545.5237 kcal/mol (3543.9912 without restraints) Performing minimization step: 4855. Total energy = 3545.2847 kcal/mol (3543.7526 without restraints) Performing minimization step: 4856. Total energy = 3545.0460 kcal/mol (3543.5144 without restraints) Performing minimization step: 4857. Total energy = 3544.8070 kcal/mol (3543.2759 without restraints) Performing minimization step: 4858. Total energy = 3544.5684 kcal/mol (3543.0376 without restraints) Performing minimization step: 4859. Total energy = 3544.3293 kcal/mol (3542.7991 without restraints) Performing minimization step: 4860. Total energy = 3544.0906 kcal/mol (3542.5608 without restraints) Performing minimization step: 4861. Total energy = 3543.8522 kcal/mol (3542.3228 without restraints) Performing minimization step: 4862. Total energy = 3543.6137 kcal/mol (3542.0848 without restraints) Performing minimization step: 4863. Total energy = 3543.3758 kcal/mol (3541.8473 without restraints) Performing minimization step: 4864. Total energy = 3543.1380 kcal/mol (3541.6100 without restraints) Performing minimization step: 4865. Total energy = 3542.8999 kcal/mol (3541.3724 without restraints) Performing minimization step: 4866. Total energy = 3542.6619 kcal/mol (3541.1349 without restraints) Performing minimization step: 4867. Total energy = 3542.4244 kcal/mol (3540.8978 without restraints) Performing minimization step: 4868. Total energy = 3542.1868 kcal/mol (3540.6606 without restraints) Performing minimization step: 4869. Total energy = 3541.9493 kcal/mol (3540.4236 without restraints) Performing minimization step: 4870. Total energy = 3541.7120 kcal/mol (3540.1867 without restraints) Performing minimization step: 4871. Total energy = 3541.4751 kcal/mol (3539.9504 without restraints) Performing minimization step: 4872. Total energy = 3541.2379 kcal/mol (3539.7135 without restraints) Performing minimization step: 4873. Total energy = 3541.0006 kcal/mol (3539.4766 without restraints) Performing minimization step: 4874. Total energy = 3540.7634 kcal/mol (3539.2399 without restraints) Performing minimization step: 4875. Total energy = 3540.5262 kcal/mol (3539.0032 without restraints) Performing minimization step: 4876. Total energy = 3540.2895 kcal/mol (3538.7669 without restraints) Performing minimization step: 4877. Total energy = 3540.0527 kcal/mol (3538.5305 without restraints) Performing minimization step: 4878. Total energy = 3539.8163 kcal/mol (3538.2945 without restraints) Performing minimization step: 4879. Total energy = 3539.5796 kcal/mol (3538.0584 without restraints) Performing minimization step: 4880. Total energy = 3539.3431 kcal/mol (3537.8222 without restraints) Performing minimization step: 4881. Total energy = 3539.1070 kcal/mol (3537.5866 without restraints) Performing minimization step: 4882. Total energy = 3538.8708 kcal/mol (3537.3508 without restraints) Performing minimization step: 4883. Total energy = 3538.6345 kcal/mol (3537.1150 without restraints) Performing minimization step: 4884. Total energy = 3538.3983 kcal/mol (3536.8792 without restraints) Performing minimization step: 4885. Total energy = 3538.1625 kcal/mol (3536.6438 without restraints) Performing minimization step: 4886. Total energy = 3537.9265 kcal/mol (3536.4083 without restraints) Performing minimization step: 4887. Total energy = 3537.6907 kcal/mol (3536.1729 without restraints) Performing minimization step: 4888. Total energy = 3537.4552 kcal/mol (3535.9379 without restraints) Performing minimization step: 4889. Total energy = 3537.2195 kcal/mol (3535.7026 without restraints) Performing minimization step: 4890. Total energy = 3536.9839 kcal/mol (3535.4674 without restraints) Performing minimization step: 4891. Total energy = 3536.7488 kcal/mol (3535.2328 without restraints) Performing minimization step: 4892. Total energy = 3536.5135 kcal/mol (3534.9979 without restraints) Performing minimization step: 4893. Total energy = 3536.2783 kcal/mol (3534.7632 without restraints) Performing minimization step: 4894. Total energy = 3536.0434 kcal/mol (3534.5289 without restraints) Performing minimization step: 4895. Total energy = 3535.8087 kcal/mol (3534.2945 without restraints) Performing minimization step: 4896. Total energy = 3535.5737 kcal/mol (3534.0598 without restraints) Performing minimization step: 4897. Total energy = 3535.3387 kcal/mol (3533.8254 without restraints) Performing minimization step: 4898. Total energy = 3535.1040 kcal/mol (3533.5910 without restraints) Performing minimization step: 4899. Total energy = 3534.8697 kcal/mol (3533.3571 without restraints) Performing minimization step: 4900. Total energy = 3534.6352 kcal/mol (3533.1231 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 3534.4006 kcal/mol (3532.8890 without restraints) Performing minimization step: 4902. Total energy = 3534.1662 kcal/mol (3532.6550 without restraints) Performing minimization step: 4903. Total energy = 3533.9321 kcal/mol (3532.4213 without restraints) Performing minimization step: 4904. Total energy = 3533.6977 kcal/mol (3532.1874 without restraints) Performing minimization step: 4905. Total energy = 3533.4639 kcal/mol (3531.9539 without restraints) Performing minimization step: 4906. Total energy = 3533.2302 kcal/mol (3531.7207 without restraints) Performing minimization step: 4907. Total energy = 3532.9970 kcal/mol (3531.4879 without restraints) Performing minimization step: 4908. Total energy = 3532.7630 kcal/mol (3531.2543 without restraints) Performing minimization step: 4909. Total energy = 3532.5297 kcal/mol (3531.0216 without restraints) Performing minimization step: 4910. Total energy = 3532.2967 kcal/mol (3530.7891 without restraints) Performing minimization step: 4911. Total energy = 3532.0634 kcal/mol (3530.5560 without restraints) Performing minimization step: 4912. Total energy = 3531.8304 kcal/mol (3530.3234 without restraints) Performing minimization step: 4913. Total energy = 3531.5974 kcal/mol (3530.0909 without restraints) Performing minimization step: 4914. Total energy = 3531.3646 kcal/mol (3529.8588 without restraints) Performing minimization step: 4915. Total energy = 3531.1317 kcal/mol (3529.6259 without restraints) Performing minimization step: 4916. Total energy = 3530.8988 kcal/mol (3529.3936 without restraints) Performing minimization step: 4917. Total energy = 3530.6667 kcal/mol (3529.1621 without restraints) Performing minimization step: 4918. Total energy = 3530.4343 kcal/mol (3528.9299 without restraints) Performing minimization step: 4919. Total energy = 3530.2015 kcal/mol (3528.6976 without restraints) Performing minimization step: 4920. Total energy = 3529.9690 kcal/mol (3528.4656 without restraints) Performing minimization step: 4921. Total energy = 3529.7366 kcal/mol (3528.2335 without restraints) Performing minimization step: 4922. Total energy = 3529.5046 kcal/mol (3528.0019 without restraints) Performing minimization step: 4923. Total energy = 3529.2722 kcal/mol (3527.7700 without restraints) Performing minimization step: 4924. Total energy = 3529.0401 kcal/mol (3527.5383 without restraints) Performing minimization step: 4925. Total energy = 3528.8083 kcal/mol (3527.3069 without restraints) Performing minimization step: 4926. Total energy = 3528.5765 kcal/mol (3527.0757 without restraints) Performing minimization step: 4927. Total energy = 3528.3447 kcal/mol (3526.8441 without restraints) Performing minimization step: 4928. Total energy = 3528.1131 kcal/mol (3526.6129 without restraints) Performing minimization step: 4929. Total energy = 3527.8813 kcal/mol (3526.3816 without restraints) Performing minimization step: 4930. Total energy = 3527.6497 kcal/mol (3526.1505 without restraints) Performing minimization step: 4931. Total energy = 3527.4186 kcal/mol (3525.9198 without restraints) Performing minimization step: 4932. Total energy = 3527.1870 kcal/mol (3525.6885 without restraints) Performing minimization step: 4933. Total energy = 3526.9558 kcal/mol (3525.4579 without restraints) Performing minimization step: 4934. Total energy = 3526.7249 kcal/mol (3525.2273 without restraints) Performing minimization step: 4935. Total energy = 3526.4944 kcal/mol (3524.9974 without restraints) Performing minimization step: 4936. Total energy = 3526.2637 kcal/mol (3524.7669 without restraints) Performing minimization step: 4937. Total energy = 3526.0332 kcal/mol (3524.5368 without restraints) Performing minimization step: 4938. Total energy = 3525.8022 kcal/mol (3524.3062 without restraints) Performing minimization step: 4939. Total energy = 3525.5722 kcal/mol (3524.0766 without restraints) Performing minimization step: 4940. Total energy = 3525.3419 kcal/mol (3523.8467 without restraints) Performing minimization step: 4941. Total energy = 3525.1114 kcal/mol (3523.6167 without restraints) Performing minimization step: 4942. Total energy = 3524.8812 kcal/mol (3523.3870 without restraints) Performing minimization step: 4943. Total energy = 3524.6515 kcal/mol (3523.1576 without restraints) Performing minimization step: 4944. Total energy = 3524.4213 kcal/mol (3522.9278 without restraints) Performing minimization step: 4945. Total energy = 3524.1910 kcal/mol (3522.6980 without restraints) Performing minimization step: 4946. Total energy = 3523.9610 kcal/mol (3522.4683 without restraints) Performing minimization step: 4947. Total energy = 3523.7311 kcal/mol (3522.2388 without restraints) Performing minimization step: 4948. Total energy = 3523.5011 kcal/mol (3522.0093 without restraints) Performing minimization step: 4949. Total energy = 3523.2713 kcal/mol (3521.7799 without restraints) Performing minimization step: 4950. Total energy = 3523.0422 kcal/mol (3521.5512 without restraints) Performing minimization step: 4951. Total energy = 3522.8129 kcal/mol (3521.3223 without restraints) Performing minimization step: 4952. Total energy = 3522.5838 kcal/mol (3521.0939 without restraints) Performing minimization step: 4953. Total energy = 3522.3551 kcal/mol (3520.8653 without restraints) Performing minimization step: 4954. Total energy = 3522.1262 kcal/mol (3520.6368 without restraints) Performing minimization step: 4955. Total energy = 3521.8975 kcal/mol (3520.4086 without restraints) Performing minimization step: 4956. Total energy = 3521.6686 kcal/mol (3520.1801 without restraints) Performing minimization step: 4957. Total energy = 3521.4397 kcal/mol (3519.9516 without restraints) Performing minimization step: 4958. Total energy = 3521.2108 kcal/mol (3519.7231 without restraints) Performing minimization step: 4959. Total energy = 3520.9819 kcal/mol (3519.4946 without restraints) Performing minimization step: 4960. Total energy = 3520.7530 kcal/mol (3519.2660 without restraints) Performing minimization step: 4961. Total energy = 3520.5239 kcal/mol (3519.0373 without restraints) Performing minimization step: 4962. Total energy = 3520.2954 kcal/mol (3518.8093 without restraints) Performing minimization step: 4963. Total energy = 3520.0672 kcal/mol (3518.5815 without restraints) Performing minimization step: 4964. Total energy = 3519.8390 kcal/mol (3518.3536 without restraints) Performing minimization step: 4965. Total energy = 3519.6109 kcal/mol (3518.1260 without restraints) Performing minimization step: 4966. Total energy = 3519.3829 kcal/mol (3517.8983 without restraints) Performing minimization step: 4967. Total energy = 3519.1549 kcal/mol (3517.6708 without restraints) Performing minimization step: 4968. Total energy = 3518.9269 kcal/mol (3517.4432 without restraints) Performing minimization step: 4969. Total energy = 3518.6988 kcal/mol (3517.2155 without restraints) Performing minimization step: 4970. Total energy = 3518.4710 kcal/mol (3516.9881 without restraints) Performing minimization step: 4971. Total energy = 3518.2432 kcal/mol (3516.7607 without restraints) Performing minimization step: 4972. Total energy = 3518.0162 kcal/mol (3516.5341 without restraints) Performing minimization step: 4973. Total energy = 3517.7890 kcal/mol (3516.3073 without restraints) Performing minimization step: 4974. Total energy = 3517.5618 kcal/mol (3516.0804 without restraints) Performing minimization step: 4975. Total energy = 3517.3352 kcal/mol (3515.8543 without restraints) Performing minimization step: 4976. Total energy = 3517.1078 kcal/mol (3515.6272 without restraints) Performing minimization step: 4977. Total energy = 3516.8805 kcal/mol (3515.4004 without restraints) Performing minimization step: 4978. Total energy = 3516.6537 kcal/mol (3515.1741 without restraints) Performing minimization step: 4979. Total energy = 3516.4266 kcal/mol (3514.9473 without restraints) Performing minimization step: 4980. Total energy = 3516.1996 kcal/mol (3514.7207 without restraints) Performing minimization step: 4981. Total energy = 3515.9729 kcal/mol (3514.4944 without restraints) Performing minimization step: 4982. Total energy = 3515.7464 kcal/mol (3514.2684 without restraints) Performing minimization step: 4983. Total energy = 3515.5199 kcal/mol (3514.0421 without restraints) Performing minimization step: 4984. Total energy = 3515.2933 kcal/mol (3513.8159 without restraints) Performing minimization step: 4985. Total energy = 3515.0667 kcal/mol (3513.5897 without restraints) Performing minimization step: 4986. Total energy = 3514.8403 kcal/mol (3513.3638 without restraints) Performing minimization step: 4987. Total energy = 3514.6141 kcal/mol (3513.1379 without restraints) Performing minimization step: 4988. Total energy = 3514.3883 kcal/mol (3512.9127 without restraints) Performing minimization step: 4989. Total energy = 3514.1619 kcal/mol (3512.6865 without restraints) Performing minimization step: 4990. Total energy = 3513.9362 kcal/mol (3512.4612 without restraints) Performing minimization step: 4991. Total energy = 3513.7102 kcal/mol (3512.2356 without restraints) Performing minimization step: 4992. Total energy = 3513.4847 kcal/mol (3512.0107 without restraints) Performing minimization step: 4993. Total energy = 3513.2594 kcal/mol (3511.7856 without restraints) Performing minimization step: 4994. Total energy = 3513.0338 kcal/mol (3511.5603 without restraints) Performing minimization step: 4995. Total energy = 3512.8083 kcal/mol (3511.3352 without restraints) Performing minimization step: 4996. Total energy = 3512.5830 kcal/mol (3511.1104 without restraints) Performing minimization step: 4997. Total energy = 3512.3577 kcal/mol (3510.8854 without restraints) Performing minimization step: 4998. Total energy = 3512.1324 kcal/mol (3510.6605 without restraints) Performing minimization step: 4999. Total energy = 3511.9071 kcal/mol (3510.4357 without restraints) Performing minimization step: 5000. Total energy = 3511.6823 kcal/mol (3510.2112 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c2992044/tmp/ENST00000581360_refx/ENST00000581360_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to ENST00000581360_refx.pdb DONE!