============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2.pdb ============================================================================= Error: recognition of atom ATOM 19 'H5' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 20 'HO5 DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 24 1H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 25 2H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 47 C5M DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 51 HN3 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 52 1HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 53 2HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 54 3HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 81 'H5' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 85 1H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 86 2H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 114 'H5' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 118 1H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 119 2H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 144 'H5' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 148 1H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 149 2H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 176 'H5' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 180 1H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 181 2H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 203 C5M DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 207 HN3 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 208 1HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 209 2HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 210 3HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 238 'H5' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 242 1H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 243 2H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 270 'H5' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 274 1H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 275 2H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 302 'H5' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 306 1H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 307 2H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 329 C5M DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 333 HN3 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 334 1HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 335 2HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 336 3HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 358 C5M DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 362 HN3 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 363 1HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 364 2HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 365 3HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 390 'H5' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 394 1H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 395 2H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 420 'H5' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 424 1H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 425 2H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 450 'H5' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 454 1H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 455 2H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 483 'H5' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 487 1H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 488 2H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 515 'H5' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 519 1H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 520 2H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 547 'H5' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 551 1H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 552 2H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 580 'H5' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 584 1H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 585 2H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 612 'H5' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 616 1H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 617 2H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 642 'H5' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 646 1H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 647 2H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 675 'H5' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 679 1H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 680 2H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 705 'H5' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 709 1H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 710 2H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 732 C5M DT A 24 ... failed. Atom erased. Error: recognition of atom ATOM 736 HN3 DT A 24 ... failed. Atom erased. Error: recognition of atom ATOM 737 1HM5 DT A 24 ... failed. Atom erased. Error: recognition of atom ATOM 738 2HM5 DT A 24 ... failed. Atom erased. Error: recognition of atom ATOM 739 3HM5 DT A 24 ... failed. Atom erased. Error: recognition of atom ATOM 767 'H5' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 771 1H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 772 2H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 794 C5M DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 798 HN3 DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 799 1HM5 DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 800 2HM5 DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 801 3HM5 DT A 26 ... failed. Atom erased. Error: recognition of atom ATOM 829 'H5' DG A 27 ... failed. Atom erased. Error: recognition of atom ATOM 833 1H2' DG A 27 ... failed. Atom erased. Error: recognition of atom ATOM 834 2H2' DG A 27 ... failed. Atom erased. Error: recognition of atom ATOM 862 'H5' DG A 28 ... failed. Atom erased. Error: recognition of atom ATOM 866 1H2' DG A 28 ... failed. Atom erased. Error: recognition of atom ATOM 867 2H2' DG A 28 ... failed. Atom erased. Error: recognition of atom ATOM 889 C5M DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 893 HN3 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 894 1HM5 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 895 2HM5 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 896 3HM5 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 923 'H5' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 927 1H2' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 928 2H2' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 953 'H5' DC A 31 ... failed. Atom erased. Error: recognition of atom ATOM 957 1H2' DC A 31 ... failed. Atom erased. Error: recognition of atom ATOM 958 2H2' DC A 31 ... failed. Atom erased. Error: recognition of atom ATOM 986 'H5' DG A 32 ... failed. Atom erased. Error: recognition of atom ATOM 990 1H2' DG A 32 ... failed. Atom erased. Error: recognition of atom ATOM 991 2H2' DG A 32 ... failed. Atom erased. Error: recognition of atom ATOM 1016 'H5' DC A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1020 1H2' DC A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1021 2H2' DC A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1048 'H5' DA A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1052 1H2' DA A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1053 2H2' DA A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1075 C5M DT A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1079 HN3 DT A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1080 1HM5 DT A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1081 2HM5 DT A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1082 3HM5 DT A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1107 'H5' DC A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1111 1H2' DC A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1112 2H2' DC A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1137 'H5' DC A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1141 1H2' DC A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1142 2H2' DC A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1170 'H5' DG A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1174 1H2' DG A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1175 2H2' DG A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1197 C5M DT A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1201 HN3 DT A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1202 1HM5 DT A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1203 2HM5 DT A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1204 3HM5 DT A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1231 'H5' DA A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1235 1H2' DA A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1236 2H2' DA A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1263 'H5' DA A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1267 1H2' DA A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1268 2H2' DA A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1293 'H5' DC A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1297 1H2' DC A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1298 2H2' DC A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1325 'H5' DA A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1329 1H2' DA A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1330 2H2' DA A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1352 C5M DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1356 HN3 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1357 1HM5 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1358 2HM5 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1359 3HM5 DT A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1387 'H5' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1391 1H2' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1392 2H2' DG A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1417 'H5' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1421 1H2' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1422 2H2' DC A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1444 C5M DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1448 HN3 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1449 1HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1450 2HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1451 3HM5 DT A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1476 'H5' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1480 1H2' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1481 2H2' DC A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1506 'H5' DC A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1510 1H2' DC A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1511 2H2' DC A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1538 'H5' DA A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1542 1H2' DA A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1543 2H2' DA A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1571 'H5' DG A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1575 1H2' DG A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1576 2H2' DG A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1601 'H5' DC A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1605 1H2' DC A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1606 2H2' DC A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1628 C5M DT A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1632 HN3 DT A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1633 1HM5 DT A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1634 2HM5 DT A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1635 3HM5 DT A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1663 'H5' DG A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1667 1H2' DG A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1668 2H2' DG A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1690 C5M DT A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1694 HN3 DT A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1695 1HM5 DT A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1696 2HM5 DT A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1697 3HM5 DT A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1724 'H5' DA A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1728 1H2' DA A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1729 2H2' DA A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1751 C5M DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1755 HN3 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1756 1HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1757 2HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1758 3HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1786 'H5' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1790 1H2' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1791 2H2' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1813 C5M DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1817 HN3 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1818 1HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1819 2HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1820 3HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1847 'H5' DA A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1851 1H2' DA A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1852 2H2' DA A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1874 C5M DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1878 HN3 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1879 1HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1880 2HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1881 3HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1909 'H5' DG A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1913 1H2' DG A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1914 2H2' DG A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1942 'H5' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1946 1H2' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1947 2H2' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1975 'H5' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1979 1H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1980 2H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 2002 C5M DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2006 HN3 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2007 1HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2008 2HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2009 3HM5 DT A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2034 'H5' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2038 1H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2039 2H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2067 'H5' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2071 1H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2072 2H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2099 'H5' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2103 1H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2104 2H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2129 'H5' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2133 1H2' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2134 2H2' DC A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2162 'H5' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2166 1H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2167 2H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2194 'H5' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2198 1H2' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2199 2H2' DA A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2227 'H5' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2231 1H2' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2232 2H2' DG A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2260 'H5' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2264 1H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2265 2H2' DG A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2287 C5M DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2291 HN3 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2292 1HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2293 2HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2294 3HM5 DT A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2319 'H5' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2323 1H2' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2324 2H2' DC A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2346 C5M DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2350 HN3 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2351 1HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2352 2HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2353 3HM5 DT A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2380 'H5' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2384 1H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2385 2H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2413 'H5' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2417 1H2' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2418 2H2' DG A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2445 'H5' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2449 1H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2450 2H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2477 'H5' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2481 1H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2482 2H2' DA A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2504 C5M DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2508 HN3 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2509 1HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2510 2HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2511 3HM5 DT A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2538 'H5' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2542 1H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2543 2H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2568 'H5' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2572 1H2' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2573 2H2' DC A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2598 'H5' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2602 1H2' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2603 2H2' DC A 84 ... failed. Atom erased. Error: recognition of atom ATOM 2630 'H5' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2634 1H2' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2635 2H2' DA A 85 ... failed. Atom erased. Error: recognition of atom ATOM 2663 'H5' DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2664 'HO3 DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2668 1H2' DG A 86 ... failed. Atom erased. Error: recognition of atom ATOM 2669 2H2' DG A 86 ... failed. Atom erased. Missing atom added: HETATM 1 P DA A 1 0.929 -0.142 -2.420 1.00 0.00 P Missing atom added: HETATM 24 H5'2 DA A 1 2.027 -1.865 -0.308 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 1 1.498 0.469 3.742 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 1 1.747 -1.416 4.361 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 2 6.472 -0.850 4.592 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 2 4.315 -5.016 6.513 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 2 5.703 -5.171 7.582 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 2 0.912 -7.225 4.419 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 2 4.341 -6.051 1.588 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 2 3.678 -5.723 0.779 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 2 4.650 -7.084 1.388 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 2 5.234 -5.416 1.584 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 3 8.644 -6.969 7.700 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 3 7.117 -10.815 8.761 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 3 7.487 -11.158 6.826 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 4 10.588 -13.008 7.872 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 4 10.354 -16.369 5.264 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 4 11.793 -15.387 4.282 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 5 15.343 -15.586 5.062 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 5 13.166 -18.991 2.076 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 5 14.746 -18.370 1.019 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 6 17.496 -20.952 2.098 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 6 17.862 -21.510 -2.408 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 6 19.251 -20.084 -2.217 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 7 21.617 -23.675 -1.911 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 7 23.208 -20.758 -5.269 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 7 24.553 -21.891 -5.234 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 7 22.064 -16.308 -5.057 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 7 21.838 -18.063 -0.877 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 7 20.812 -17.766 -0.667 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 7 22.523 -17.302 -0.502 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 7 22.049 -19.012 -0.388 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 8 26.420 -20.207 -2.891 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 8 27.648 -16.598 -1.110 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 8 28.199 -18.034 0.167 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 9 28.355 -16.276 -5.645 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 9 27.486 -12.059 -4.551 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 9 29.092 -12.268 -3.379 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 10 28.839 -13.982 -9.140 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 10 26.546 -15.245 -11.403 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 10 28.064 -16.452 -11.892 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 11 28.227 -17.927 -8.379 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 11 24.555 -20.662 -9.223 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 11 25.655 -21.766 -10.038 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 11 20.313 -20.124 -10.056 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 11 22.829 -16.353 -10.942 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 11 22.079 -15.633 -10.588 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 11 22.736 -16.437 -12.035 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 11 23.825 -15.949 -10.715 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 12 26.756 -21.778 -13.848 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 12 24.233 -23.330 -13.542 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 12 24.731 -24.747 -14.458 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 12 20.546 -21.586 -14.369 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 12 23.441 -18.199 -13.371 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 12 22.785 -17.763 -12.619 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 12 23.275 -17.705 -14.329 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 12 24.479 -18.063 -13.070 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 13 30.080 -22.479 -16.931 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 13 32.122 -23.006 -20.937 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 13 32.473 -24.974 -20.985 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 14 26.684 -24.527 -20.453 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 14 23.881 -24.804 -21.098 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 14 23.917 -24.549 -19.116 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 15 24.272 -18.587 -19.613 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 15 25.237 -17.544 -16.833 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 15 24.675 -15.975 -17.937 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 16 18.875 -19.078 -16.006 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 16 16.684 -19.551 -19.991 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 16 15.675 -20.517 -18.561 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 17 12.836 -20.112 -16.410 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 17 12.381 -23.979 -16.675 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 17 13.078 -23.401 -14.892 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 18 10.636 -23.949 -12.390 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 18 12.859 -26.614 -9.883 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 18 13.448 -24.893 -9.054 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 19 10.727 -24.646 -6.112 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 19 13.094 -23.719 -2.916 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 19 13.087 -21.896 -3.737 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 20 8.981 -22.748 -1.576 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 20 7.391 -21.685 1.454 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 20 6.668 -20.266 0.245 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 21 3.704 -22.642 -0.943 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 21 1.822 -18.767 1.773 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 21 1.462 -17.819 0.051 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 22 -1.425 -20.039 -2.709 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 22 -2.428 -17.085 -5.311 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 22 -1.527 -17.956 -6.869 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 23 -5.907 -20.453 -6.424 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 23 -7.308 -17.193 -9.608 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 23 -5.856 -17.949 -10.755 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 24 -9.250 -20.994 -10.883 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 24 -7.816 -18.918 -15.253 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 24 -9.300 -19.531 -15.973 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 24 -3.596 -18.403 -16.534 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 24 -4.086 -22.138 -13.844 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 24 -3.196 -21.985 -13.239 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 24 -3.856 -22.803 -14.676 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 24 -4.873 -22.576 -13.234 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 25 -11.626 -22.201 -17.661 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 25 -11.663 -20.232 -21.619 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 25 -9.846 -21.040 -21.821 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 26 -9.934 -24.196 -23.524 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 26 -7.176 -22.949 -24.085 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 26 -7.391 -22.655 -25.806 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 26 -3.552 -24.075 -22.634 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 26 -6.717 -25.718 -19.710 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 26 -6.389 -25.190 -18.817 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 26 -6.277 -26.716 -19.727 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 26 -7.803 -25.801 -19.706 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 27 -11.029 -24.186 -28.907 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 27 -6.793 -26.774 -28.893 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 27 -8.232 -28.153 -29.062 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 28 -7.709 -29.903 -30.021 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 28 -5.756 -31.591 -33.400 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 28 -4.881 -29.948 -32.671 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 29 -2.969 -31.953 -30.724 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 29 -3.172 -34.315 -27.863 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 29 -1.782 -34.587 -26.818 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 29 -4.340 -32.480 -22.051 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 29 -7.189 -31.889 -25.616 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 29 -7.500 -30.864 -25.407 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 29 -7.906 -32.579 -25.163 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 29 -7.180 -32.046 -26.696 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 30 2.722 -33.230 -29.208 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 30 2.746 -28.941 -31.562 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 30 2.693 -27.768 -29.944 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 31 6.118 -27.868 -26.269 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 31 4.839 -24.695 -29.592 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 31 3.967 -23.594 -28.170 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 32 4.581 -21.718 -25.367 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 32 2.278 -20.072 -28.781 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 32 1.199 -19.633 -27.156 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 33 1.654 -16.000 -27.052 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 33 -2.181 -14.554 -26.767 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 33 -1.828 -14.717 -24.806 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 34 1.634 -13.741 -22.789 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 34 -0.165 -10.758 -19.490 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 34 1.021 -11.910 -18.366 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 35 5.364 -12.804 -20.052 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 35 6.772 -16.001 -19.290 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 35 7.906 -15.693 -17.981 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 35 3.103 -19.347 -17.609 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 35 4.268 -18.426 -21.971 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 35 3.259 -18.236 -22.342 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 35 4.528 -19.471 -22.162 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 35 4.971 -17.783 -22.505 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 36 7.499 -10.290 -15.621 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 36 4.617 -6.931 -15.068 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 36 3.762 -8.254 -13.837 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 37 6.687 -7.195 -10.406 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 37 2.276 -7.856 -8.371 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 37 2.603 -9.827 -8.317 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 38 4.956 -5.158 -5.891 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 38 4.017 -7.004 -1.437 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 38 5.671 -8.124 -1.345 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 39 8.775 -5.108 0.545 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 39 9.289 -9.366 2.593 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 39 10.772 -8.705 3.272 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 39 8.537 -12.954 0.602 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 39 8.213 -9.271 -2.219 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 39 7.324 -9.579 -2.744 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 39 9.103 -9.534 -2.772 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 39 8.190 -8.216 -1.999 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 40 13.390 -6.136 3.119 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 40 16.526 -9.647 2.474 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 40 17.261 -8.748 0.847 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 41 19.329 -7.789 1.234 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 41 22.018 -10.990 0.083 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 41 20.479 -12.123 0.668 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 42 22.613 -7.248 -1.412 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 42 25.073 -7.050 0.722 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 42 25.975 -7.912 -0.840 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 43 24.741 -5.695 -5.741 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 43 24.844 -8.622 -8.779 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 43 23.594 -9.630 -7.588 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 44 20.569 -7.693 -10.003 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 44 19.608 -12.282 -8.995 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 44 18.248 -12.050 -10.086 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 44 18.948 -13.495 -4.780 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 44 21.349 -9.602 -4.767 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 44 22.121 -9.979 -4.089 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 44 20.602 -9.056 -4.178 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 44 21.813 -8.903 -5.471 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 45 14.202 -9.954 -10.675 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 45 13.007 -14.083 -9.541 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 45 13.468 -13.541 -7.673 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 46 9.665 -10.707 -10.764 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 46 8.196 -14.353 -7.551 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 46 7.927 -13.153 -5.975 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 47 3.305 -12.833 -7.700 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 47 1.199 -12.403 -3.787 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 47 -0.140 -12.463 -4.926 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 47 1.776 -12.161 0.551 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 47 1.355 -8.428 -2.122 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 47 2.203 -7.905 -1.679 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 47 0.434 -8.103 -1.632 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 47 1.300 -8.189 -3.184 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 48 -2.483 -11.294 -6.787 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 48 -5.980 -12.708 -4.471 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 48 -5.797 -10.893 -3.654 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 49 -8.067 -8.179 -5.482 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 49 -9.711 -6.283 -1.901 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 49 -7.977 -5.290 -1.931 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 50 -9.742 -2.727 -4.684 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 50 -9.897 0.249 -1.510 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 50 -8.237 0.949 -2.376 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 51 -9.927 3.453 -4.649 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 51 -7.422 6.254 -2.395 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 51 -6.076 6.005 -3.852 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 52 -7.131 8.811 -6.377 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 52 -2.932 10.096 -5.723 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 52 -2.477 8.808 -7.181 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 53 -3.311 12.130 -9.861 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 53 -0.015 9.428 -11.344 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 53 0.462 10.769 -12.377 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 53 0.305 5.225 -12.221 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 53 -3.921 6.159 -10.715 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 53 -3.950 5.434 -9.903 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 53 -4.354 5.716 -11.614 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 53 -4.497 7.040 -10.434 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 54 0.022 12.520 -15.322 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 54 3.249 9.930 -16.786 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 54 1.809 8.767 -17.542 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 55 1.823 10.604 -20.860 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 55 0.773 6.086 -21.332 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 55 1.264 6.314 -23.006 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 55 -2.533 3.964 -19.630 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 55 -2.785 8.335 -18.191 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 55 -2.954 8.095 -17.139 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 55 -3.751 8.496 -18.680 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 55 -2.197 9.252 -18.257 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 56 0.228 7.354 -26.264 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 56 -1.084 3.269 -26.895 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 56 -2.913 3.883 -26.369 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 57 -3.775 4.764 -30.001 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 57 -7.423 3.238 -27.456 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 57 -8.145 2.849 -29.012 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 57 -8.864 4.861 -23.690 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 57 -5.774 7.757 -25.472 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 57 -5.190 7.882 -24.559 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 57 -6.503 8.568 -25.546 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 57 -5.105 7.799 -26.333 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 58 -10.049 3.952 -31.714 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 58 -13.594 2.610 -29.502 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 58 -13.766 4.515 -28.920 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 59 -15.855 5.547 -31.970 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 59 -16.901 7.830 -28.044 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 59 -18.442 8.169 -28.823 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 59 -14.020 10.112 -25.505 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 59 -12.163 9.122 -29.613 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 59 -11.181 8.847 -29.217 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 59 -12.137 10.172 -29.924 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 59 -12.374 8.503 -30.490 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 60 -20.539 10.397 -30.615 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 60 -21.629 13.047 -27.289 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 60 -19.922 13.937 -27.828 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 61 -22.192 15.986 -30.288 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 61 -19.053 18.730 -28.153 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 61 -20.109 20.047 -28.650 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 61 -14.969 16.551 -27.140 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 61 -16.488 15.800 -31.446 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 61 -16.339 14.719 -31.429 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 61 -15.612 16.275 -31.897 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 61 -17.367 16.030 -32.051 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 62 -20.376 22.678 -30.588 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 62 -17.134 25.113 -29.336 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 62 -16.182 24.212 -30.845 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 63 -17.221 26.985 -33.335 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 63 -13.002 27.850 -33.129 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 63 -12.799 26.529 -34.616 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 64 -12.944 28.975 -37.429 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 64 -8.938 27.570 -38.298 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 64 -9.829 26.290 -39.548 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 65 -9.728 28.707 -42.457 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 65 -9.469 24.194 -43.667 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 65 -8.695 24.777 -45.136 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 65 -12.433 21.107 -42.114 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 65 -14.200 25.361 -41.840 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 65 -14.563 25.281 -40.814 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 65 -15.013 25.112 -42.528 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 65 -13.879 26.387 -42.027 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 66 -9.570 26.018 -48.739 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 66 -9.838 21.878 -49.937 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 66 -11.743 22.042 -49.352 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 67 -12.590 22.761 -53.231 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 67 -14.582 19.008 -53.995 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 67 -16.172 19.961 -53.245 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 68 -17.496 21.194 -56.529 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 68 -20.766 18.452 -55.440 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 68 -21.589 20.043 -54.553 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 69 -23.610 21.295 -57.653 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 69 -27.053 20.788 -54.904 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 69 -26.722 22.707 -54.454 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 70 -29.315 24.101 -56.916 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 70 -31.260 25.767 -53.548 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 70 -30.000 27.304 -53.764 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 71 -32.434 29.612 -55.889 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 71 -31.434 32.574 -52.775 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 71 -29.772 33.015 -53.793 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 72 -31.680 35.813 -55.594 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 72 -29.330 38.502 -53.130 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 72 -27.995 38.405 -54.615 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 73 -27.846 39.275 -57.830 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 73 -24.561 41.277 -55.542 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 73 -23.737 40.379 -57.126 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 74 -23.237 43.786 -58.665 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 74 -19.427 41.945 -59.882 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 74 -18.984 43.560 -60.419 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 74 -19.106 37.909 -61.635 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 74 -23.457 38.649 -60.453 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 74 -23.593 37.832 -59.744 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 74 -23.778 38.323 -61.445 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 74 -24.066 39.499 -60.142 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 75 -18.966 45.691 -63.088 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 75 -15.636 43.459 -65.043 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 75 -17.128 42.546 -66.010 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 76 -16.908 44.953 -69.022 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 76 -18.648 40.511 -69.886 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 76 -18.634 41.027 -71.568 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 76 -22.104 38.477 -68.667 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 76 -22.065 42.613 -66.612 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 76 -22.274 42.245 -65.598 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 76 -23.020 42.907 -67.072 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 76 -21.439 43.511 -66.526 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 77 -20.244 43.145 -72.281 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 77 -19.574 43.492 -76.170 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 77 -18.044 42.689 -75.164 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 78 -23.366 40.224 -75.031 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 78 -22.901 35.936 -74.848 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 78 -23.225 36.823 -73.085 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 79 -27.262 36.144 -71.593 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 79 -29.041 36.198 -69.364 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 79 -28.510 34.329 -69.834 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 80 -24.586 32.227 -68.789 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 80 -22.447 29.957 -71.843 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 80 -21.058 31.237 -71.188 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 81 -19.872 28.471 -68.098 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 81 -17.359 32.145 -68.365 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 81 -16.084 31.198 -67.609 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 81 -17.686 36.321 -67.963 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 81 -21.468 34.152 -66.396 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 81 -22.194 34.701 -66.990 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 81 -21.362 34.620 -65.418 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 81 -21.796 33.123 -66.275 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 82 -14.350 29.873 -64.762 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 82 -12.725 34.277 -64.650 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 82 -14.170 34.660 -63.323 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 83 -14.034 33.850 -59.786 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 83 -14.630 37.380 -58.803 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 83 -16.106 36.316 -57.975 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 84 -15.718 35.961 -54.191 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 84 -17.344 39.182 -52.734 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 84 -18.534 37.641 -52.282 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 85 -16.456 38.518 -48.122 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 85 -20.808 40.350 -47.799 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 85 -21.545 38.495 -47.694 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 86 -21.823 38.613 -43.968 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 86 -26.159 37.773 -44.518 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 86 -25.696 35.839 -44.732 1.00 0.00 H Number of atoms: 2733 Number of residues: 86 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. A 1 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. A 1 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. A 1 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. A 1 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. A 1 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2950 Number of angles built: 5357 Number of dihedrals built: 8007 Number of impropers built: 585 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 3724971 Number of van der Waals pairs: 322195 Number of H-bonds built: 40 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 7 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 183849.6850 kcal/mol (183481.2550 without restraints) Performing minimization step: 2. Total energy = 180841.4323 kcal/mol (180483.9656 without restraints) Performing minimization step: 3. Total energy = 177923.8588 kcal/mol (177576.8386 without restraints) Performing minimization step: 4. Total energy = 175092.7231 kcal/mol (174755.6648 without restraints) Performing minimization step: 5. Total energy = 172344.0463 kcal/mol (172016.4949 without restraints) Performing minimization step: 6. Total energy = 169674.0926 kcal/mol (169355.6209 without restraints) Performing minimization step: 7. Total energy = 167079.3524 kcal/mol (166769.5589 without restraints) Performing minimization step: 8. Total energy = 164556.5262 kcal/mol (164255.0334 without restraints) Performing minimization step: 9. Total energy = 162102.5101 kcal/mol (161808.9625 without restraints) Performing minimization step: 10. Total energy = 159714.3820 kcal/mol (159428.4452 without restraints) Performing minimization step: 11. Total energy = 157389.3896 kcal/mol (157110.7481 without restraints) Performing minimization step: 12. Total energy = 155124.9383 kcal/mol (154853.2949 without restraints) Performing minimization step: 13. Total energy = 152918.5808 kcal/mol (152653.6549 without restraints) Performing minimization step: 14. Total energy = 150768.0071 kcal/mol (150509.5339 without restraints) Performing minimization step: 15. Total energy = 148671.0355 kcal/mol (148418.7648 without restraints) Performing minimization step: 16. Total energy = 146625.6039 kcal/mol (146379.2989 without restraints) Performing minimization step: 17. Total energy = 144629.7619 kcal/mol (144389.1988 without restraints) Performing minimization step: 18. Total energy = 142681.6636 kcal/mol (142446.6304 without restraints) Performing minimization step: 19. Total energy = 140779.5606 kcal/mol (140549.8566 without restraints) Performing minimization step: 20. Total energy = 138921.7962 kcal/mol (138697.2308 without restraints) Performing minimization step: 21. Total energy = 137106.7986 kcal/mol (136887.1914 without restraints) Performing minimization step: 22. Total energy = 135333.0768 kcal/mol (135118.2561 without restraints) Performing minimization step: 23. Total energy = 133599.2134 kcal/mol (133389.0163 without restraints) Performing minimization step: 24. Total energy = 131903.8626 kcal/mol (131698.1342 without restraints) Performing minimization step: 25. Total energy = 130245.7438 kcal/mol (130044.3367 without restraints) Performing minimization step: 26. Total energy = 128623.6382 kcal/mol (128426.4120 without restraints) Performing minimization step: 27. Total energy = 127036.3848 kcal/mol (126843.2058 without restraints) Performing minimization step: 28. Total energy = 125482.8772 kcal/mol (125293.6179 without restraints) Performing minimization step: 29. Total energy = 123962.0600 kcal/mol (123776.5988 without restraints) Performing minimization step: 30. Total energy = 122472.9261 kcal/mol (122291.1468 without restraints) Performing minimization step: 31. Total energy = 121014.5134 kcal/mol (120836.3049 without restraints) Performing minimization step: 32. Total energy = 119585.9025 kcal/mol (119411.1588 without restraints) Performing minimization step: 33. Total energy = 118186.2137 kcal/mol (118014.8332 without restraints) Performing minimization step: 34. Total energy = 116814.6054 kcal/mol (116646.4910 without restraints) Performing minimization step: 35. Total energy = 115470.2716 kcal/mol (115305.3302 without restraints) Performing minimization step: 36. Total energy = 114152.4400 kcal/mol (113990.5823 without restraints) Performing minimization step: 37. Total energy = 112860.3695 kcal/mol (112701.5099 without restraints) Performing minimization step: 38. Total energy = 111593.3500 kcal/mol (111437.4063 without restraints) Performing minimization step: 39. Total energy = 110350.6989 kcal/mol (110197.5922 without restraints) Performing minimization step: 40. Total energy = 109131.7609 kcal/mol (108981.4156 without restraints) Performing minimization step: 41. Total energy = 107935.9056 kcal/mol (107788.2483 without restraints) Performing minimization step: 42. Total energy = 106762.5268 kcal/mol (106617.4877 without restraints) Performing minimization step: 43. Total energy = 105611.0415 kcal/mol (105468.5529 without restraints) Performing minimization step: 44. Total energy = 104480.8882 kcal/mol (104340.8851 without restraints) Performing minimization step: 45. Total energy = 103371.5257 kcal/mol (103233.9455 without restraints) Performing minimization step: 46. Total energy = 102282.4327 kcal/mol (102147.2148 without restraints) Performing minimization step: 47. Total energy = 101213.1061 kcal/mol (101080.1923 without restraints) Performing minimization step: 48. Total energy = 100163.0607 kcal/mol (100032.3948 without restraints) Performing minimization step: 49. Total energy = 99131.8281 kcal/mol (99003.3556 without restraints) Performing minimization step: 50. Total energy = 98118.9557 kcal/mol (97992.6243 without restraints) Performing minimization step: 51. Total energy = 97124.0064 kcal/mol (96999.7653 without restraints) Performing minimization step: 52. Total energy = 96146.5575 kcal/mol (96024.3577 without restraints) Performing minimization step: 53. Total energy = 95186.2004 kcal/mol (95065.9943 without restraints) Performing minimization step: 54. Total energy = 94242.5395 kcal/mol (94124.2812 without restraints) Performing minimization step: 55. Total energy = 93315.1917 kcal/mol (93198.8368 without restraints) Performing minimization step: 56. Total energy = 92403.7869 kcal/mol (92289.2923 without restraints) Performing minimization step: 57. Total energy = 91507.9652 kcal/mol (91395.2892 without restraints) Performing minimization step: 58. Total energy = 90627.3787 kcal/mol (90516.4809 without restraints) Performing minimization step: 59. Total energy = 89761.6905 kcal/mol (89652.5316 without restraints) Performing minimization step: 60. Total energy = 88910.5732 kcal/mol (88803.1153 without restraints) Performing minimization step: 61. Total energy = 88073.7092 kcal/mol (87967.9153 without restraints) Performing minimization step: 62. Total energy = 87250.7905 kcal/mol (87146.6249 without restraints) Performing minimization step: 63. Total energy = 86441.5178 kcal/mol (86338.9454 without restraints) Performing minimization step: 64. Total energy = 85645.6002 kcal/mol (85544.5874 without restraints) Performing minimization step: 65. Total energy = 84862.7558 kcal/mol (84763.2697 without restraints) Performing minimization step: 66. Total energy = 84092.7101 kcal/mol (83994.7189 without restraints) Performing minimization step: 67. Total energy = 83335.1966 kcal/mol (83238.6691 without restraints) Performing minimization step: 68. Total energy = 82589.9559 kcal/mol (82494.8620 without restraints) Performing minimization step: 69. Total energy = 81856.7357 kcal/mol (81763.0461 without restraints) Performing minimization step: 70. Total energy = 81135.2905 kcal/mol (81042.9765 without restraints) Performing minimization step: 71. Total energy = 80425.3819 kcal/mol (80334.4157 without restraints) Performing minimization step: 72. Total energy = 79726.7771 kcal/mol (79637.1317 without restraints) Performing minimization step: 73. Total energy = 79039.2496 kcal/mol (78950.8986 without restraints) Performing minimization step: 74. Total energy = 78362.5793 kcal/mol (78275.4970 without restraints) Performing minimization step: 75. Total energy = 77696.5508 kcal/mol (77610.7122 without restraints) Performing minimization step: 76. Total energy = 77040.9550 kcal/mol (76956.3357 without restraints) Performing minimization step: 77. Total energy = 76395.5878 kcal/mol (76312.1640 without restraints) Performing minimization step: 78. Total energy = 75760.2503 kcal/mol (75677.9988 without restraints) Performing minimization step: 79. Total energy = 75134.7485 kcal/mol (75053.6468 without restraints) Performing minimization step: 80. Total energy = 74518.8931 kcal/mol (74438.9190 without restraints) Performing minimization step: 81. Total energy = 73912.4997 kcal/mol (73833.6316 without restraints) Performing minimization step: 82. Total energy = 73315.3873 kcal/mol (73237.6043 without restraints) Performing minimization step: 83. Total energy = 72727.3810 kcal/mol (72650.6626 without restraints) Performing minimization step: 84. Total energy = 72148.3089 kcal/mol (72072.6352 without restraints) Performing minimization step: 85. Total energy = 71578.0034 kcal/mol (71503.3547 without restraints) Performing minimization step: 86. Total energy = 71016.3009 kcal/mol (70942.6582 without restraints) Performing minimization step: 87. Total energy = 70463.0415 kcal/mol (70390.3861 without restraints) Performing minimization step: 88. Total energy = 69918.0690 kcal/mol (69846.3827 without restraints) Performing minimization step: 89. Total energy = 69381.2309 kcal/mol (69310.4959 without restraints) Performing minimization step: 90. Total energy = 68852.3780 kcal/mol (68782.5769 without restraints) Performing minimization step: 91. Total energy = 68331.3647 kcal/mol (68262.4806 without restraints) Performing minimization step: 92. Total energy = 67818.0485 kcal/mol (67750.0646 without restraints) Performing minimization step: 93. Total energy = 67312.2901 kcal/mol (67245.1902 without restraints) Performing minimization step: 94. Total energy = 66813.9530 kcal/mol (66747.7212 without restraints) Performing minimization step: 95. Total energy = 66322.9044 kcal/mol (66257.5251 without restraints) Performing minimization step: 96. Total energy = 65839.0135 kcal/mol (65774.4715 without restraints) Performing minimization step: 97. Total energy = 65362.1531 kcal/mol (65298.4336 without restraints) Performing minimization step: 98. Total energy = 64892.1982 kcal/mol (64829.2865 without restraints) Performing minimization step: 99. Total energy = 64429.0270 kcal/mol (64366.9090 without restraints) Performing minimization step: 100. Total energy = 63972.5200 kcal/mol (63911.1818 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 101. Total energy = 63522.5601 kcal/mol (63461.9878 without restraints) Performing minimization step: 102. Total energy = 63079.0328 kcal/mol (63019.2132 without restraints) Performing minimization step: 103. Total energy = 62641.8263 kcal/mol (62582.7463 without restraints) Performing minimization step: 104. Total energy = 62210.8305 kcal/mol (62152.4773 without restraints) Performing minimization step: 105. Total energy = 61785.9382 kcal/mol (61728.2991 without restraints) Performing minimization step: 106. Total energy = 61367.0442 kcal/mol (61310.1070 without restraints) Performing minimization step: 107. Total energy = 60954.0449 kcal/mol (60897.7975 without restraints) Performing minimization step: 108. Total energy = 60546.8397 kcal/mol (60491.2705 without restraints) Performing minimization step: 109. Total energy = 60145.3292 kcal/mol (60090.4264 without restraints) Performing minimization step: 110. Total energy = 59749.4166 kcal/mol (59695.1690 without restraints) Performing minimization step: 111. Total energy = 59359.0067 kcal/mol (59305.4031 without restraints) Performing minimization step: 112. Total energy = 58974.0065 kcal/mol (58921.0360 without restraints) Performing minimization step: 113. Total energy = 58594.3245 kcal/mol (58541.9765 without restraints) Performing minimization step: 114. Total energy = 58219.8715 kcal/mol (58168.1355 without restraints) Performing minimization step: 115. Total energy = 57850.5595 kcal/mol (57799.4252 without restraints) Performing minimization step: 116. Total energy = 57486.3023 kcal/mol (57435.7598 without restraints) Performing minimization step: 117. Total energy = 57127.0160 kcal/mol (57077.0554 without restraints) Performing minimization step: 118. Total energy = 56772.6178 kcal/mol (56723.2293 without restraints) Performing minimization step: 119. Total energy = 56423.0264 kcal/mol (56374.2007 without restraints) Performing minimization step: 120. Total energy = 56078.1626 kcal/mol (56029.8903 without restraints) Performing minimization step: 121. Total energy = 55737.9479 kcal/mol (55690.2198 without restraints) Performing minimization step: 122. Total energy = 55402.3058 kcal/mol (55355.1131 without restraints) Performing minimization step: 123. Total energy = 55071.1615 kcal/mol (55024.4953 without restraints) Performing minimization step: 124. Total energy = 54744.4411 kcal/mol (54698.2929 without restraints) Performing minimization step: 125. Total energy = 54422.0724 kcal/mol (54376.4337 without restraints) Performing minimization step: 126. Total energy = 54103.9845 kcal/mol (54058.8470 without restraints) Performing minimization step: 127. Total energy = 53790.1078 kcal/mol (53745.4634 without restraints) Performing minimization step: 128. Total energy = 53480.3741 kcal/mol (53436.2147 without restraints) Performing minimization step: 129. Total energy = 53174.7162 kcal/mol (53131.0341 without restraints) Performing minimization step: 130. Total energy = 52873.0685 kcal/mol (52829.8559 without restraints) Performing minimization step: 131. Total energy = 52575.3662 kcal/mol (52532.6157 without restraints) Performing minimization step: 132. Total energy = 52281.5462 kcal/mol (52239.2503 without restraints) Performing minimization step: 133. Total energy = 51991.5461 kcal/mol (51949.6975 without restraints) Performing minimization step: 134. Total energy = 51705.3048 kcal/mol (51663.8964 without restraints) Performing minimization step: 135. Total energy = 51422.7627 kcal/mol (51381.7875 without restraints) Performing minimization step: 136. Total energy = 51143.8604 kcal/mol (51103.3115 without restraints) Performing minimization step: 137. Total energy = 50868.5402 kcal/mol (50828.4109 without restraints) Performing minimization step: 138. Total energy = 50596.7456 kcal/mol (50557.0291 without restraints) Performing minimization step: 139. Total energy = 50328.4206 kcal/mol (50289.1104 without restraints) Performing minimization step: 140. Total energy = 50063.5105 kcal/mol (50024.6004 without restraints) Performing minimization step: 141. Total energy = 49801.9616 kcal/mol (49763.4451 without restraints) Performing minimization step: 142. Total energy = 49543.7208 kcal/mol (49505.5919 without restraints) Performing minimization step: 143. Total energy = 49288.7369 kcal/mol (49250.9894 without restraints) Performing minimization step: 144. Total energy = 49036.9585 kcal/mol (48999.5864 without restraints) Performing minimization step: 145. Total energy = 48788.3356 kcal/mol (48751.3331 without restraints) Performing minimization step: 146. Total energy = 48542.8192 kcal/mol (48506.1806 without restraints) Performing minimization step: 147. Total energy = 48300.3606 kcal/mol (48264.0803 without restraints) Performing minimization step: 148. Total energy = 48060.9127 kcal/mol (48024.9850 without restraints) Performing minimization step: 149. Total energy = 47824.4284 kcal/mol (47788.8480 without restraints) Performing minimization step: 150. Total energy = 47590.8625 kcal/mol (47555.6239 without restraints) Performing minimization step: 151. Total energy = 47360.1698 kcal/mol (47325.2678 without restraints) Performing minimization step: 152. Total energy = 47132.3059 kcal/mol (47097.7353 without restraints) Performing minimization step: 153. Total energy = 46907.2275 kcal/mol (46872.9832 without restraints) Performing minimization step: 154. Total energy = 46684.8918 kcal/mol (46650.9689 without restraints) Performing minimization step: 155. Total energy = 46465.2568 kcal/mol (46431.6503 without restraints) Performing minimization step: 156. Total energy = 46248.2817 kcal/mol (46214.9868 without restraints) Performing minimization step: 157. Total energy = 46033.9250 kcal/mol (46000.9369 without restraints) Performing minimization step: 158. Total energy = 45822.1471 kcal/mol (45789.4612 without restraints) Performing minimization step: 159. Total energy = 45612.9092 kcal/mol (45580.5209 without restraints) Performing minimization step: 160. Total energy = 45406.1729 kcal/mol (45374.0778 without restraints) Performing minimization step: 161. Total energy = 45201.9001 kcal/mol (45170.0937 without restraints) Performing minimization step: 162. Total energy = 45000.0536 kcal/mol (44968.5314 without restraints) Performing minimization step: 163. Total energy = 44800.5965 kcal/mol (44769.3544 without restraints) Performing minimization step: 164. Total energy = 44603.4934 kcal/mol (44572.5271 without restraints) Performing minimization step: 165. Total energy = 44408.7083 kcal/mol (44378.0137 without restraints) Performing minimization step: 166. Total energy = 44216.2071 kcal/mol (44185.7801 without restraints) Performing minimization step: 167. Total energy = 44025.9552 kcal/mol (43995.7918 without restraints) Performing minimization step: 168. Total energy = 43837.9190 kcal/mol (43808.0154 without restraints) Performing minimization step: 169. Total energy = 43652.0656 kcal/mol (43622.4177 without restraints) Performing minimization step: 170. Total energy = 43468.3628 kcal/mol (43438.9669 without restraints) Performing minimization step: 171. Total energy = 43286.7779 kcal/mol (43257.6303 without restraints) Performing minimization step: 172. Total energy = 43107.2795 kcal/mol (43078.3765 without restraints) Performing minimization step: 173. Total energy = 42929.8370 kcal/mol (42901.1750 without restraints) Performing minimization step: 174. Total energy = 42754.4199 kcal/mol (42725.9953 without restraints) Performing minimization step: 175. Total energy = 42580.9983 kcal/mol (42552.8076 without restraints) Performing minimization step: 176. Total energy = 42409.5427 kcal/mol (42381.5825 without restraints) Performing minimization step: 177. Total energy = 42240.0244 kcal/mol (42212.2912 without restraints) Performing minimization step: 178. Total energy = 42072.4146 kcal/mol (42044.9052 without restraints) Performing minimization step: 179. Total energy = 41906.6854 kcal/mol (41879.3965 without restraints) Performing minimization step: 180. Total energy = 41742.8096 kcal/mol (41715.7380 without restraints) Performing minimization step: 181. Total energy = 41580.7598 kcal/mol (41553.9022 without restraints) Performing minimization step: 182. Total energy = 41420.5091 kcal/mol (41393.8624 without restraints) Performing minimization step: 183. Total energy = 41262.0316 kcal/mol (41235.5928 without restraints) Performing minimization step: 184. Total energy = 41105.3012 kcal/mol (41079.0673 without restraints) Performing minimization step: 185. Total energy = 40950.2925 kcal/mol (40924.2605 without restraints) Performing minimization step: 186. Total energy = 40796.9811 kcal/mol (40771.1481 without restraints) Performing minimization step: 187. Total energy = 40645.3418 kcal/mol (40619.7049 without restraints) Performing minimization step: 188. Total energy = 40495.3505 kcal/mol (40469.9068 without restraints) Performing minimization step: 189. Total energy = 40346.9837 kcal/mol (40321.7305 without restraints) Performing minimization step: 190. Total energy = 40200.2178 kcal/mol (40175.1523 without restraints) Performing minimization step: 191. Total energy = 40055.0296 kcal/mol (40030.1492 without restraints) Performing minimization step: 192. Total energy = 39911.3966 kcal/mol (39886.6986 without restraints) Performing minimization step: 193. Total energy = 39769.2965 kcal/mol (39744.7782 without restraints) Performing minimization step: 194. Total energy = 39628.7072 kcal/mol (39604.3661 without restraints) Performing minimization step: 195. Total energy = 39489.6074 kcal/mol (39465.4411 without restraints) Performing minimization step: 196. Total energy = 39351.9753 kcal/mol (39327.9812 without restraints) Performing minimization step: 197. Total energy = 39215.7904 kcal/mol (39191.9659 without restraints) Performing minimization step: 198. Total energy = 39081.0322 kcal/mol (39057.3750 without restraints) Performing minimization step: 199. Total energy = 38947.6794 kcal/mol (38924.1872 without restraints) Performing minimization step: 200. Total energy = 38815.7127 kcal/mol (38792.3831 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 201. Total energy = 38685.1124 kcal/mol (38661.9430 without restraints) Performing minimization step: 202. Total energy = 38555.8593 kcal/mol (38532.8480 without restraints) Performing minimization step: 203. Total energy = 38427.9343 kcal/mol (38405.0788 without restraints) Performing minimization step: 204. Total energy = 38301.3183 kcal/mol (38278.6164 without restraints) Performing minimization step: 205. Total energy = 38175.9931 kcal/mol (38153.4426 without restraints) Performing minimization step: 206. Total energy = 38051.9405 kcal/mol (38029.5395 without restraints) Performing minimization step: 207. Total energy = 37929.1426 kcal/mol (37906.8886 without restraints) Performing minimization step: 208. Total energy = 37807.5820 kcal/mol (37785.4733 without restraints) Performing minimization step: 209. Total energy = 37687.2406 kcal/mol (37665.2750 without restraints) Performing minimization step: 210. Total energy = 37568.1020 kcal/mol (37546.2776 without restraints) Performing minimization step: 211. Total energy = 37450.1491 kcal/mol (37428.4637 without restraints) Performing minimization step: 212. Total energy = 37333.3651 kcal/mol (37311.8170 without restraints) Performing minimization step: 213. Total energy = 37217.7342 kcal/mol (37196.3213 without restraints) Performing minimization step: 214. Total energy = 37103.2399 kcal/mol (37081.9605 without restraints) Performing minimization step: 215. Total energy = 36989.8664 kcal/mol (36968.7185 without restraints) Performing minimization step: 216. Total energy = 36877.5985 kcal/mol (36856.5805 without restraints) Performing minimization step: 217. Total energy = 36766.4205 kcal/mol (36745.5304 without restraints) Performing minimization step: 218. Total energy = 36656.3174 kcal/mol (36635.5535 without restraints) Performing minimization step: 219. Total energy = 36547.2745 kcal/mol (36526.6350 without restraints) Performing minimization step: 220. Total energy = 36439.2770 kcal/mol (36418.7603 without restraints) Performing minimization step: 221. Total energy = 36332.3104 kcal/mol (36311.9146 without restraints) Performing minimization step: 222. Total energy = 36226.3607 kcal/mol (36206.0844 without restraints) Performing minimization step: 223. Total energy = 36121.4135 kcal/mol (36101.2549 without restraints) Performing minimization step: 224. Total energy = 36017.4559 kcal/mol (35997.4135 without restraints) Performing minimization step: 225. Total energy = 35914.4732 kcal/mol (35894.5453 without restraints) Performing minimization step: 226. Total energy = 35812.4525 kcal/mol (35792.6376 without restraints) Performing minimization step: 227. Total energy = 35711.3806 kcal/mol (35691.6771 without restraints) Performing minimization step: 228. Total energy = 35611.2446 kcal/mol (35591.6510 without restraints) Performing minimization step: 229. Total energy = 35512.0315 kcal/mol (35492.5462 without restraints) Performing minimization step: 230. Total energy = 35413.7286 kcal/mol (35394.3503 without restraints) Performing minimization step: 231. Total energy = 35316.3240 kcal/mol (35297.0514 without restraints) Performing minimization step: 232. Total energy = 35219.8055 kcal/mol (35200.6368 without restraints) Performing minimization step: 233. Total energy = 35124.1605 kcal/mol (35105.0944 without restraints) Performing minimization step: 234. Total energy = 35029.3773 kcal/mol (35010.4126 without restraints) Performing minimization step: 235. Total energy = 34935.4447 kcal/mol (34916.5799 without restraints) Performing minimization step: 236. Total energy = 34842.3508 kcal/mol (34823.5846 without restraints) Performing minimization step: 237. Total energy = 34750.0844 kcal/mol (34731.4154 without restraints) Performing minimization step: 238. Total energy = 34658.6345 kcal/mol (34640.0614 without restraints) Performing minimization step: 239. Total energy = 34567.9894 kcal/mol (34549.5110 without restraints) Performing minimization step: 240. Total energy = 34478.1388 kcal/mol (34459.7537 without restraints) Performing minimization step: 241. Total energy = 34389.0717 kcal/mol (34370.7788 without restraints) Performing minimization step: 242. Total energy = 34300.7789 kcal/mol (34282.5768 without restraints) Performing minimization step: 243. Total energy = 34213.2484 kcal/mol (34195.1360 without restraints) Performing minimization step: 244. Total energy = 34126.4701 kcal/mol (34108.4463 without restraints) Performing minimization step: 245. Total energy = 34040.4341 kcal/mol (34022.4974 without restraints) Performing minimization step: 246. Total energy = 33955.1310 kcal/mol (33937.2806 without restraints) Performing minimization step: 247. Total energy = 33870.5511 kcal/mol (33852.7856 without restraints) Performing minimization step: 248. Total energy = 33786.6841 kcal/mol (33769.0025 without restraints) Performing minimization step: 249. Total energy = 33703.5208 kcal/mol (33685.9220 without restraints) Performing minimization step: 250. Total energy = 33621.0520 kcal/mol (33603.5348 without restraints) Performing minimization step: 251. Total energy = 33539.2687 kcal/mol (33521.8322 without restraints) Performing minimization step: 252. Total energy = 33458.1612 kcal/mol (33440.8041 without restraints) Performing minimization step: 253. Total energy = 33377.7208 kcal/mol (33360.4423 without restraints) Performing minimization step: 254. Total energy = 33297.9388 kcal/mol (33280.7378 without restraints) Performing minimization step: 255. Total energy = 33218.8066 kcal/mol (33201.6820 without restraints) Performing minimization step: 256. Total energy = 33140.3155 kcal/mol (33123.2663 without restraints) Performing minimization step: 257. Total energy = 33062.4571 kcal/mol (33045.4824 without restraints) Performing minimization step: 258. Total energy = 32985.2233 kcal/mol (32968.3221 without restraints) Performing minimization step: 259. Total energy = 32908.6054 kcal/mol (32891.7766 without restraints) Performing minimization step: 260. Total energy = 32832.5956 kcal/mol (32815.8385 without restraints) Performing minimization step: 261. Total energy = 32757.1863 kcal/mol (32740.4997 without restraints) Performing minimization step: 262. Total energy = 32682.3690 kcal/mol (32665.7523 without restraints) Performing minimization step: 263. Total energy = 32608.1361 kcal/mol (32591.5882 without restraints) Performing minimization step: 264. Total energy = 32534.4807 kcal/mol (32518.0008 without restraints) Performing minimization step: 265. Total energy = 32461.3948 kcal/mol (32444.9819 without restraints) Performing minimization step: 266. Total energy = 32388.8711 kcal/mol (32372.5244 without restraints) Performing minimization step: 267. Total energy = 32316.9022 kcal/mol (32300.6209 without restraints) Performing minimization step: 268. Total energy = 32245.4810 kcal/mol (32229.2643 without restraints) Performing minimization step: 269. Total energy = 32174.6005 kcal/mol (32158.4475 without restraints) Performing minimization step: 270. Total energy = 32104.2537 kcal/mol (32088.1635 without restraints) Performing minimization step: 271. Total energy = 32034.4339 kcal/mol (32018.4058 without restraints) Performing minimization step: 272. Total energy = 31965.1339 kcal/mol (31949.1671 without restraints) Performing minimization step: 273. Total energy = 31896.3475 kcal/mol (31880.4412 without restraints) Performing minimization step: 274. Total energy = 31828.0676 kcal/mol (31812.2211 without restraints) Performing minimization step: 275. Total energy = 31760.2881 kcal/mol (31744.5006 without restraints) Performing minimization step: 276. Total energy = 31693.0027 kcal/mol (31677.2734 without restraints) Performing minimization step: 277. Total energy = 31626.2056 kcal/mol (31610.5339 without restraints) Performing minimization step: 278. Total energy = 31559.8888 kcal/mol (31544.2737 without restraints) Performing minimization step: 279. Total energy = 31494.0477 kcal/mol (31478.4887 without restraints) Performing minimization step: 280. Total energy = 31428.6760 kcal/mol (31413.1724 without restraints) Performing minimization step: 281. Total energy = 31363.7677 kcal/mol (31348.3189 without restraints) Performing minimization step: 282. Total energy = 31299.3169 kcal/mol (31283.9220 without restraints) Performing minimization step: 283. Total energy = 31235.3179 kcal/mol (31219.9764 without restraints) Performing minimization step: 284. Total energy = 31171.7654 kcal/mol (31156.4765 without restraints) Performing minimization step: 285. Total energy = 31108.6527 kcal/mol (31093.4158 without restraints) Performing minimization step: 286. Total energy = 31045.9753 kcal/mol (31030.7898 without restraints) Performing minimization step: 287. Total energy = 30983.7275 kcal/mol (30968.5926 without restraints) Performing minimization step: 288. Total energy = 30921.9039 kcal/mol (30906.8192 without restraints) Performing minimization step: 289. Total energy = 30860.4992 kcal/mol (30845.4639 without restraints) Performing minimization step: 290. Total energy = 30799.5085 kcal/mol (30784.5221 without restraints) Performing minimization step: 291. Total energy = 30738.9263 kcal/mol (30723.9883 without restraints) Performing minimization step: 292. Total energy = 30678.7479 kcal/mol (30663.8575 without restraints) Performing minimization step: 293. Total energy = 30618.9679 kcal/mol (30604.1246 without restraints) Performing minimization step: 294. Total energy = 30559.5815 kcal/mol (30544.7847 without restraints) Performing minimization step: 295. Total energy = 30500.5841 kcal/mol (30485.8333 without restraints) Performing minimization step: 296. Total energy = 30441.9706 kcal/mol (30427.2652 without restraints) Performing minimization step: 297. Total energy = 30383.7363 kcal/mol (30369.0758 without restraints) Performing minimization step: 298. Total energy = 30325.8769 kcal/mol (30311.2608 without restraints) Performing minimization step: 299. Total energy = 30268.3875 kcal/mol (30253.8151 without restraints) Performing minimization step: 300. Total energy = 30211.2638 kcal/mol (30196.7346 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 301. Total energy = 30154.5015 kcal/mol (30140.0151 without restraints) Performing minimization step: 302. Total energy = 30098.0952 kcal/mol (30083.6510 without restraints) Performing minimization step: 303. Total energy = 30042.0421 kcal/mol (30027.6396 without restraints) Performing minimization step: 304. Total energy = 29986.3374 kcal/mol (29971.9762 without restraints) Performing minimization step: 305. Total energy = 29930.9767 kcal/mol (29916.6562 without restraints) Performing minimization step: 306. Total energy = 29875.9560 kcal/mol (29861.6758 without restraints) Performing minimization step: 307. Total energy = 29821.2712 kcal/mol (29807.0308 without restraints) Performing minimization step: 308. Total energy = 29766.9183 kcal/mol (29752.7172 without restraints) Performing minimization step: 309. Total energy = 29712.8937 kcal/mol (29698.7316 without restraints) Performing minimization step: 310. Total energy = 29659.1929 kcal/mol (29645.0690 without restraints) Performing minimization step: 311. Total energy = 29605.8122 kcal/mol (29591.7264 without restraints) Performing minimization step: 312. Total energy = 29552.7484 kcal/mol (29538.7002 without restraints) Performing minimization step: 313. Total energy = 29499.9971 kcal/mol (29485.9859 without restraints) Performing minimization step: 314. Total energy = 29447.5549 kcal/mol (29433.5802 without restraints) Performing minimization step: 315. Total energy = 29395.4179 kcal/mol (29381.4796 without restraints) Performing minimization step: 316. Total energy = 29343.5827 kcal/mol (29329.6803 without restraints) Performing minimization step: 317. Total energy = 29292.0461 kcal/mol (29278.1790 without restraints) Performing minimization step: 318. Total energy = 29240.8046 kcal/mol (29226.9726 without restraints) Performing minimization step: 319. Total energy = 29189.8546 kcal/mol (29176.0573 without restraints) Performing minimization step: 320. Total energy = 29139.1926 kcal/mol (29125.4293 without restraints) Performing minimization step: 321. Total energy = 29088.8152 kcal/mol (29075.0858 without restraints) Performing minimization step: 322. Total energy = 29038.7193 kcal/mol (29025.0234 without restraints) Performing minimization step: 323. Total energy = 28988.9019 kcal/mol (28975.2390 without restraints) Performing minimization step: 324. Total energy = 28939.3598 kcal/mol (28925.7299 without restraints) Performing minimization step: 325. Total energy = 28890.0899 kcal/mol (28876.4921 without restraints) Performing minimization step: 326. Total energy = 28841.0884 kcal/mol (28827.5226 without restraints) Performing minimization step: 327. Total energy = 28792.3529 kcal/mol (28778.8188 without restraints) Performing minimization step: 328. Total energy = 28743.8802 kcal/mol (28730.3773 without restraints) Performing minimization step: 329. Total energy = 28695.6674 kcal/mol (28682.1955 without restraints) Performing minimization step: 330. Total energy = 28647.7118 kcal/mol (28634.2705 without restraints) Performing minimization step: 331. Total energy = 28600.0103 kcal/mol (28586.5992 without restraints) Performing minimization step: 332. Total energy = 28552.5599 kcal/mol (28539.1787 without restraints) Performing minimization step: 333. Total energy = 28505.3580 kcal/mol (28492.0065 without restraints) Performing minimization step: 334. Total energy = 28458.4022 kcal/mol (28445.0799 without restraints) Performing minimization step: 335. Total energy = 28411.6892 kcal/mol (28398.3959 without restraints) Performing minimization step: 336. Total energy = 28365.2165 kcal/mol (28351.9519 without restraints) Performing minimization step: 337. Total energy = 28318.9815 kcal/mol (28305.7451 without restraints) Performing minimization step: 338. Total energy = 28272.9822 kcal/mol (28259.7740 without restraints) Performing minimization step: 339. Total energy = 28227.2151 kcal/mol (28214.0348 without restraints) Performing minimization step: 340. Total energy = 28181.6777 kcal/mol (28168.5246 without restraints) Performing minimization step: 341. Total energy = 28136.3679 kcal/mol (28123.2421 without restraints) Performing minimization step: 342. Total energy = 28091.2834 kcal/mol (28078.1844 without restraints) Performing minimization step: 343. Total energy = 28046.4218 kcal/mol (28033.3496 without restraints) Performing minimization step: 344. Total energy = 28001.7805 kcal/mol (27988.7345 without restraints) Performing minimization step: 345. Total energy = 27957.3574 kcal/mol (27944.3375 without restraints) Performing minimization step: 346. Total energy = 27913.1498 kcal/mol (27900.1558 without restraints) Performing minimization step: 347. Total energy = 27869.1557 kcal/mol (27856.1871 without restraints) Performing minimization step: 348. Total energy = 27825.3729 kcal/mol (27812.4296 without restraints) Performing minimization step: 349. Total energy = 27781.7992 kcal/mol (27768.8809 without restraints) Performing minimization step: 350. Total energy = 27738.4321 kcal/mol (27725.5385 without restraints) Performing minimization step: 351. Total energy = 27695.2690 kcal/mol (27682.3999 without restraints) Performing minimization step: 352. Total energy = 27652.3083 kcal/mol (27639.4635 without restraints) Performing minimization step: 353. Total energy = 27609.5482 kcal/mol (27596.7274 without restraints) Performing minimization step: 354. Total energy = 27566.9863 kcal/mol (27554.1893 without restraints) Performing minimization step: 355. Total energy = 27524.6207 kcal/mol (27511.8472 without restraints) Performing minimization step: 356. Total energy = 27482.4498 kcal/mol (27469.6996 without restraints) Performing minimization step: 357. Total energy = 27440.4710 kcal/mol (27427.7439 without restraints) Performing minimization step: 358. Total energy = 27398.6826 kcal/mol (27385.9783 without restraints) Performing minimization step: 359. Total energy = 27357.0826 kcal/mol (27344.4009 without restraints) Performing minimization step: 360. Total energy = 27315.6691 kcal/mol (27303.0098 without restraints) Performing minimization step: 361. Total energy = 27274.4405 kcal/mol (27261.8033 without restraints) Performing minimization step: 362. Total energy = 27233.3943 kcal/mol (27220.7791 without restraints) Performing minimization step: 363. Total energy = 27192.5295 kcal/mol (27179.9361 without restraints) Performing minimization step: 364. Total energy = 27151.8443 kcal/mol (27139.2725 without restraints) Performing minimization step: 365. Total energy = 27111.3362 kcal/mol (27098.7857 without restraints) Performing minimization step: 366. Total energy = 27071.0036 kcal/mol (27058.4743 without restraints) Performing minimization step: 367. Total energy = 27030.8451 kcal/mol (27018.3367 without restraints) Performing minimization step: 368. Total energy = 26990.8587 kcal/mol (26978.3710 without restraints) Performing minimization step: 369. Total energy = 26951.0426 kcal/mol (26938.5754 without restraints) Performing minimization step: 370. Total energy = 26911.3957 kcal/mol (26898.9489 without restraints) Performing minimization step: 371. Total energy = 26871.9163 kcal/mol (26859.4897 without restraints) Performing minimization step: 372. Total energy = 26832.6032 kcal/mol (26820.1966 without restraints) Performing minimization step: 373. Total energy = 26793.4534 kcal/mol (26781.0666 without restraints) Performing minimization step: 374. Total energy = 26754.4673 kcal/mol (26742.1004 without restraints) Performing minimization step: 375. Total energy = 26715.6417 kcal/mol (26703.2941 without restraints) Performing minimization step: 376. Total energy = 26676.9757 kcal/mol (26664.6473 without restraints) Performing minimization step: 377. Total energy = 26638.4676 kcal/mol (26626.1583 without restraints) Performing minimization step: 378. Total energy = 26600.1163 kcal/mol (26587.8260 without restraints) Performing minimization step: 379. Total energy = 26561.9201 kcal/mol (26549.6485 without restraints) Performing minimization step: 380. Total energy = 26523.8775 kcal/mol (26511.6245 without restraints) Performing minimization step: 381. Total energy = 26485.9874 kcal/mol (26473.7528 without restraints) Performing minimization step: 382. Total energy = 26448.2481 kcal/mol (26436.0318 without restraints) Performing minimization step: 383. Total energy = 26410.6585 kcal/mol (26398.4603 without restraints) Performing minimization step: 384. Total energy = 26373.2176 kcal/mol (26361.0374 without restraints) Performing minimization step: 385. Total energy = 26335.9225 kcal/mol (26323.7600 without restraints) Performing minimization step: 386. Total energy = 26298.7733 kcal/mol (26286.6285 without restraints) Performing minimization step: 387. Total energy = 26261.7684 kcal/mol (26249.6410 without restraints) Performing minimization step: 388. Total energy = 26224.9065 kcal/mol (26212.7965 without restraints) Performing minimization step: 389. Total energy = 26188.1863 kcal/mol (26176.0935 without restraints) Performing minimization step: 390. Total energy = 26151.6064 kcal/mol (26139.5307 without restraints) Performing minimization step: 391. Total energy = 26115.1661 kcal/mol (26103.1076 without restraints) Performing minimization step: 392. Total energy = 26078.8642 kcal/mol (26066.8223 without restraints) Performing minimization step: 393. Total energy = 26042.6989 kcal/mol (26030.6735 without restraints) Performing minimization step: 394. Total energy = 26006.6689 kcal/mol (25994.6600 without restraints) Performing minimization step: 395. Total energy = 25970.7735 kcal/mol (25958.7810 without restraints) Performing minimization step: 396. Total energy = 25935.0112 kcal/mol (25923.0349 without restraints) Performing minimization step: 397. Total energy = 25899.3812 kcal/mol (25887.4212 without restraints) Performing minimization step: 398. Total energy = 25863.8823 kcal/mol (25851.9381 without restraints) Performing minimization step: 399. Total energy = 25828.5133 kcal/mol (25816.5849 without restraints) Performing minimization step: 400. Total energy = 25793.2731 kcal/mol (25781.3605 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 401. Total energy = 25758.1606 kcal/mol (25746.2635 without restraints) Performing minimization step: 402. Total energy = 25723.1747 kcal/mol (25711.2931 without restraints) Performing minimization step: 403. Total energy = 25688.3148 kcal/mol (25676.4487 without restraints) Performing minimization step: 404. Total energy = 25653.5799 kcal/mol (25641.7292 without restraints) Performing minimization step: 405. Total energy = 25618.9687 kcal/mol (25607.1329 without restraints) Performing minimization step: 406. Total energy = 25584.4796 kcal/mol (25572.6588 without restraints) Performing minimization step: 407. Total energy = 25550.1124 kcal/mol (25538.3064 without restraints) Performing minimization step: 408. Total energy = 25515.8660 kcal/mol (25504.0750 without restraints) Performing minimization step: 409. Total energy = 25481.7395 kcal/mol (25469.9630 without restraints) Performing minimization step: 410. Total energy = 25447.7315 kcal/mol (25435.9695 without restraints) Performing minimization step: 411. Total energy = 25413.8414 kcal/mol (25402.0939 without restraints) Performing minimization step: 412. Total energy = 25380.0683 kcal/mol (25368.3351 without restraints) Performing minimization step: 413. Total energy = 25346.4108 kcal/mol (25334.6918 without restraints) Performing minimization step: 414. Total energy = 25312.8686 kcal/mol (25301.1638 without restraints) Performing minimization step: 415. Total energy = 25279.4404 kcal/mol (25267.7495 without restraints) Performing minimization step: 416. Total energy = 25246.1253 kcal/mol (25234.4485 without restraints) Performing minimization step: 417. Total energy = 25212.9229 kcal/mol (25201.2598 without restraints) Performing minimization step: 418. Total energy = 25179.8323 kcal/mol (25168.1830 without restraints) Performing minimization step: 419. Total energy = 25146.8517 kcal/mol (25135.2160 without restraints) Performing minimization step: 420. Total energy = 25113.9813 kcal/mol (25102.3591 without restraints) Performing minimization step: 421. Total energy = 25081.2203 kcal/mol (25069.6116 without restraints) Performing minimization step: 422. Total energy = 25048.5685 kcal/mol (25036.9732 without restraints) Performing minimization step: 423. Total energy = 25016.0234 kcal/mol (25004.4413 without restraints) Performing minimization step: 424. Total energy = 24983.5842 kcal/mol (24972.0152 without restraints) Performing minimization step: 425. Total energy = 24951.2514 kcal/mol (24939.6955 without restraints) Performing minimization step: 426. Total energy = 24919.0237 kcal/mol (24907.4807 without restraints) Performing minimization step: 427. Total energy = 24886.8998 kcal/mol (24875.3697 without restraints) Performing minimization step: 428. Total energy = 24854.8799 kcal/mol (24843.3626 without restraints) Performing minimization step: 429. Total energy = 24822.9629 kcal/mol (24811.4584 without restraints) Performing minimization step: 430. Total energy = 24791.1483 kcal/mol (24779.6563 without restraints) Performing minimization step: 431. Total energy = 24759.4346 kcal/mol (24747.9550 without restraints) Performing minimization step: 432. Total energy = 24727.8216 kcal/mol (24716.3547 without restraints) Performing minimization step: 433. Total energy = 24696.3086 kcal/mol (24684.8541 without restraints) Performing minimization step: 434. Total energy = 24664.8953 kcal/mol (24653.4531 without restraints) Performing minimization step: 435. Total energy = 24633.5803 kcal/mol (24622.1504 without restraints) Performing minimization step: 436. Total energy = 24602.3635 kcal/mol (24590.9457 without restraints) Performing minimization step: 437. Total energy = 24571.2435 kcal/mol (24559.8378 without restraints) Performing minimization step: 438. Total energy = 24540.2202 kcal/mol (24528.8263 without restraints) Performing minimization step: 439. Total energy = 24509.2927 kcal/mol (24497.9110 without restraints) Performing minimization step: 440. Total energy = 24478.4605 kcal/mol (24467.0905 without restraints) Performing minimization step: 441. Total energy = 24447.7230 kcal/mol (24436.3648 without restraints) Performing minimization step: 442. Total energy = 24417.0792 kcal/mol (24405.7327 without restraints) Performing minimization step: 443. Total energy = 24386.5289 kcal/mol (24375.1939 without restraints) Performing minimization step: 444. Total energy = 24356.0710 kcal/mol (24344.7476 without restraints) Performing minimization step: 445. Total energy = 24325.7049 kcal/mol (24314.3931 without restraints) Performing minimization step: 446. Total energy = 24295.4306 kcal/mol (24284.1302 without restraints) Performing minimization step: 447. Total energy = 24265.2481 kcal/mol (24253.9590 without restraints) Performing minimization step: 448. Total energy = 24235.1554 kcal/mol (24223.8777 without restraints) Performing minimization step: 449. Total energy = 24205.1527 kcal/mol (24193.8861 without restraints) Performing minimization step: 450. Total energy = 24175.2387 kcal/mol (24163.9832 without restraints) Performing minimization step: 451. Total energy = 24145.4135 kcal/mol (24134.1691 without restraints) Performing minimization step: 452. Total energy = 24115.6758 kcal/mol (24104.4424 without restraints) Performing minimization step: 453. Total energy = 24086.0266 kcal/mol (24074.8043 without restraints) Performing minimization step: 454. Total energy = 24056.4640 kcal/mol (24045.2524 without restraints) Performing minimization step: 455. Total energy = 24026.9877 kcal/mol (24015.7870 without restraints) Performing minimization step: 456. Total energy = 23997.5974 kcal/mol (23986.4075 without restraints) Performing minimization step: 457. Total energy = 23968.2919 kcal/mol (23957.1125 without restraints) Performing minimization step: 458. Total energy = 23939.0702 kcal/mol (23927.9016 without restraints) Performing minimization step: 459. Total energy = 23909.9343 kcal/mol (23898.7766 without restraints) Performing minimization step: 460. Total energy = 23880.8820 kcal/mol (23869.7346 without restraints) Performing minimization step: 461. Total energy = 23851.9131 kcal/mol (23840.7761 without restraints) Performing minimization step: 462. Total energy = 23823.0265 kcal/mol (23811.9000 without restraints) Performing minimization step: 463. Total energy = 23794.2228 kcal/mol (23783.1066 without restraints) Performing minimization step: 464. Total energy = 23765.5007 kcal/mol (23754.3949 without restraints) Performing minimization step: 465. Total energy = 23736.8602 kcal/mol (23725.7645 without restraints) Performing minimization step: 466. Total energy = 23708.3007 kcal/mol (23697.2155 without restraints) Performing minimization step: 467. Total energy = 23679.8215 kcal/mol (23668.7462 without restraints) Performing minimization step: 468. Total energy = 23651.4218 kcal/mol (23640.3566 without restraints) Performing minimization step: 469. Total energy = 23623.1016 kcal/mol (23612.0466 without restraints) Performing minimization step: 470. Total energy = 23594.8608 kcal/mol (23583.8156 without restraints) Performing minimization step: 471. Total energy = 23566.6983 kcal/mol (23555.6631 without restraints) Performing minimization step: 472. Total energy = 23538.6140 kcal/mol (23527.5886 without restraints) Performing minimization step: 473. Total energy = 23510.6070 kcal/mol (23499.5915 without restraints) Performing minimization step: 474. Total energy = 23482.6776 kcal/mol (23471.6718 without restraints) Performing minimization step: 475. Total energy = 23454.8247 kcal/mol (23443.8287 without restraints) Performing minimization step: 476. Total energy = 23427.0483 kcal/mol (23416.0619 without restraints) Performing minimization step: 477. Total energy = 23399.3474 kcal/mol (23388.3706 without restraints) Performing minimization step: 478. Total energy = 23371.7224 kcal/mol (23360.7554 without restraints) Performing minimization step: 479. Total energy = 23344.1734 kcal/mol (23333.2157 without restraints) Performing minimization step: 480. Total energy = 23316.6980 kcal/mol (23305.7499 without restraints) Performing minimization step: 481. Total energy = 23289.2968 kcal/mol (23278.3583 without restraints) Performing minimization step: 482. Total energy = 23261.9698 kcal/mol (23251.0405 without restraints) Performing minimization step: 483. Total energy = 23234.7162 kcal/mol (23223.7964 without restraints) Performing minimization step: 484. Total energy = 23207.5355 kcal/mol (23196.6250 without restraints) Performing minimization step: 485. Total energy = 23180.4279 kcal/mol (23169.5266 without restraints) Performing minimization step: 486. Total energy = 23153.3926 kcal/mol (23142.5007 without restraints) Performing minimization step: 487. Total energy = 23126.4293 kcal/mol (23115.5465 without restraints) Performing minimization step: 488. Total energy = 23099.5374 kcal/mol (23088.6637 without restraints) Performing minimization step: 489. Total energy = 23072.7169 kcal/mol (23061.8524 without restraints) Performing minimization step: 490. Total energy = 23045.9674 kcal/mol (23035.1118 without restraints) Performing minimization step: 491. Total energy = 23019.2882 kcal/mol (23008.4417 without restraints) Performing minimization step: 492. Total energy = 22992.6792 kcal/mol (22981.8418 without restraints) Performing minimization step: 493. Total energy = 22966.1408 kcal/mol (22955.3123 without restraints) Performing minimization step: 494. Total energy = 22939.6708 kcal/mol (22928.8512 without restraints) Performing minimization step: 495. Total energy = 22913.2702 kcal/mol (22902.4594 without restraints) Performing minimization step: 496. Total energy = 22886.9385 kcal/mol (22876.1365 without restraints) Performing minimization step: 497. Total energy = 22860.6751 kcal/mol (22849.8819 without restraints) Performing minimization step: 498. Total energy = 22834.4795 kcal/mol (22823.6949 without restraints) Performing minimization step: 499. Total energy = 22808.3518 kcal/mol (22797.5760 without restraints) Performing minimization step: 500. Total energy = 22782.2915 kcal/mol (22771.5245 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 501. Total energy = 22756.2984 kcal/mol (22745.5400 without restraints) Performing minimization step: 502. Total energy = 22730.3721 kcal/mol (22719.6222 without restraints) Performing minimization step: 503. Total energy = 22704.5119 kcal/mol (22693.7706 without restraints) Performing minimization step: 504. Total energy = 22678.7176 kcal/mol (22667.9849 without restraints) Performing minimization step: 505. Total energy = 22652.9890 kcal/mol (22642.2645 without restraints) Performing minimization step: 506. Total energy = 22627.3264 kcal/mol (22616.6105 without restraints) Performing minimization step: 507. Total energy = 22601.7292 kcal/mol (22591.0218 without restraints) Performing minimization step: 508. Total energy = 22576.1965 kcal/mol (22565.4975 without restraints) Performing minimization step: 509. Total energy = 22550.7283 kcal/mol (22540.0374 without restraints) Performing minimization step: 510. Total energy = 22525.3246 kcal/mol (22514.6423 without restraints) Performing minimization step: 511. Total energy = 22499.9848 kcal/mol (22489.3107 without restraints) Performing minimization step: 512. Total energy = 22474.7088 kcal/mol (22464.0430 without restraints) Performing minimization step: 513. Total energy = 22449.4965 kcal/mol (22438.8387 without restraints) Performing minimization step: 514. Total energy = 22424.3471 kcal/mol (22413.6976 without restraints) Performing minimization step: 515. Total energy = 22399.2606 kcal/mol (22388.6193 without restraints) Performing minimization step: 516. Total energy = 22374.2365 kcal/mol (22363.6036 without restraints) Performing minimization step: 517. Total energy = 22349.2752 kcal/mol (22338.6504 without restraints) Performing minimization step: 518. Total energy = 22324.3760 kcal/mol (22313.7590 without restraints) Performing minimization step: 519. Total energy = 22299.5379 kcal/mol (22288.9289 without restraints) Performing minimization step: 520. Total energy = 22274.7612 kcal/mol (22264.1602 without restraints) Performing minimization step: 521. Total energy = 22250.0452 kcal/mol (22239.4522 without restraints) Performing minimization step: 522. Total energy = 22225.3906 kcal/mol (22214.8055 without restraints) Performing minimization step: 523. Total energy = 22200.7968 kcal/mol (22190.2196 without restraints) Performing minimization step: 524. Total energy = 22176.2633 kcal/mol (22165.6941 without restraints) Performing minimization step: 525. Total energy = 22151.7898 kcal/mol (22141.2284 without restraints) Performing minimization step: 526. Total energy = 22127.3762 kcal/mol (22116.8226 without restraints) Performing minimization step: 527. Total energy = 22103.0220 kcal/mol (22092.4761 without restraints) Performing minimization step: 528. Total energy = 22078.7275 kcal/mol (22068.1894 without restraints) Performing minimization step: 529. Total energy = 22054.4915 kcal/mol (22043.9611 without restraints) Performing minimization step: 530. Total energy = 22030.3149 kcal/mol (22019.7923 without restraints) Performing minimization step: 531. Total energy = 22006.1969 kcal/mol (21995.6821 without restraints) Performing minimization step: 532. Total energy = 21982.1375 kcal/mol (21971.6302 without restraints) Performing minimization step: 533. Total energy = 21958.1354 kcal/mol (21947.6358 without restraints) Performing minimization step: 534. Total energy = 21934.1916 kcal/mol (21923.6994 without restraints) Performing minimization step: 535. Total energy = 21910.3052 kcal/mol (21899.8206 without restraints) Performing minimization step: 536. Total energy = 21886.4764 kcal/mol (21875.9995 without restraints) Performing minimization step: 537. Total energy = 21862.7049 kcal/mol (21852.2354 without restraints) Performing minimization step: 538. Total energy = 21838.9906 kcal/mol (21828.5287 without restraints) Performing minimization step: 539. Total energy = 21815.3327 kcal/mol (21804.8782 without restraints) Performing minimization step: 540. Total energy = 21791.7316 kcal/mol (21781.2848 without restraints) Performing minimization step: 541. Total energy = 21768.1866 kcal/mol (21757.7470 without restraints) Performing minimization step: 542. Total energy = 21744.6973 kcal/mol (21734.2649 without restraints) Performing minimization step: 543. Total energy = 21721.2636 kcal/mol (21710.8387 without restraints) Performing minimization step: 544. Total energy = 21697.8851 kcal/mol (21687.4676 without restraints) Performing minimization step: 545. Total energy = 21674.5625 kcal/mol (21664.1525 without restraints) Performing minimization step: 546. Total energy = 21651.2955 kcal/mol (21640.8929 without restraints) Performing minimization step: 547. Total energy = 21628.0833 kcal/mol (21617.6877 without restraints) Performing minimization step: 548. Total energy = 21604.9255 kcal/mol (21594.5371 without restraints) Performing minimization step: 549. Total energy = 21581.8228 kcal/mol (21571.4416 without restraints) Performing minimization step: 550. Total energy = 21558.7740 kcal/mol (21548.4002 without restraints) Performing minimization step: 551. Total energy = 21535.7795 kcal/mol (21525.4127 without restraints) Performing minimization step: 552. Total energy = 21512.8386 kcal/mol (21502.4789 without restraints) Performing minimization step: 553. Total energy = 21489.9518 kcal/mol (21479.5993 without restraints) Performing minimization step: 554. Total energy = 21467.1180 kcal/mol (21456.7726 without restraints) Performing minimization step: 555. Total energy = 21444.3372 kcal/mol (21433.9989 without restraints) Performing minimization step: 556. Total energy = 21421.6096 kcal/mol (21411.2784 without restraints) Performing minimization step: 557. Total energy = 21398.9353 kcal/mol (21388.6110 without restraints) Performing minimization step: 558. Total energy = 21376.3136 kcal/mol (21365.9964 without restraints) Performing minimization step: 559. Total energy = 21353.7442 kcal/mol (21343.4339 without restraints) Performing minimization step: 560. Total energy = 21331.2270 kcal/mol (21320.9237 without restraints) Performing minimization step: 561. Total energy = 21308.7614 kcal/mol (21298.4649 without restraints) Performing minimization step: 562. Total energy = 21286.3483 kcal/mol (21276.0589 without restraints) Performing minimization step: 563. Total energy = 21263.9868 kcal/mol (21253.7043 without restraints) Performing minimization step: 564. Total energy = 21241.6766 kcal/mol (21231.4009 without restraints) Performing minimization step: 565. Total energy = 21219.4177 kcal/mol (21209.1489 without restraints) Performing minimization step: 566. Total energy = 21197.2098 kcal/mol (21186.9479 without restraints) Performing minimization step: 567. Total energy = 21175.0532 kcal/mol (21164.7982 without restraints) Performing minimization step: 568. Total energy = 21152.9474 kcal/mol (21142.6992 without restraints) Performing minimization step: 569. Total energy = 21130.8924 kcal/mol (21120.6509 without restraints) Performing minimization step: 570. Total energy = 21108.8875 kcal/mol (21098.6528 without restraints) Performing minimization step: 571. Total energy = 21086.9331 kcal/mol (21076.7053 without restraints) Performing minimization step: 572. Total energy = 21065.0288 kcal/mol (21054.8078 without restraints) Performing minimization step: 573. Total energy = 21043.1745 kcal/mol (21032.9601 without restraints) Performing minimization step: 574. Total energy = 21021.3695 kcal/mol (21011.1618 without restraints) Performing minimization step: 575. Total energy = 20999.6143 kcal/mol (20989.4129 without restraints) Performing minimization step: 576. Total energy = 20977.9086 kcal/mol (20967.7142 without restraints) Performing minimization step: 577. Total energy = 20956.2516 kcal/mol (20946.0638 without restraints) Performing minimization step: 578. Total energy = 20934.6437 kcal/mol (20924.4625 without restraints) Performing minimization step: 579. Total energy = 20913.0847 kcal/mol (20902.9101 without restraints) Performing minimization step: 580. Total energy = 20891.5738 kcal/mol (20881.4058 without restraints) Performing minimization step: 581. Total energy = 20870.1123 kcal/mol (20859.9508 without restraints) Performing minimization step: 582. Total energy = 20848.6989 kcal/mol (20838.5440 without restraints) Performing minimization step: 583. Total energy = 20827.3338 kcal/mol (20817.1855 without restraints) Performing minimization step: 584. Total energy = 20806.0166 kcal/mol (20795.8748 without restraints) Performing minimization step: 585. Total energy = 20784.7475 kcal/mol (20774.6121 without restraints) Performing minimization step: 586. Total energy = 20763.5256 kcal/mol (20753.3967 without restraints) Performing minimization step: 587. Total energy = 20742.3513 kcal/mol (20732.2288 without restraints) Performing minimization step: 588. Total energy = 20721.2245 kcal/mol (20711.1084 without restraints) Performing minimization step: 589. Total energy = 20700.1450 kcal/mol (20690.0354 without restraints) Performing minimization step: 590. Total energy = 20679.1121 kcal/mol (20669.0090 without restraints) Performing minimization step: 591. Total energy = 20658.1267 kcal/mol (20648.0299 without restraints) Performing minimization step: 592. Total energy = 20637.1877 kcal/mol (20627.0972 without restraints) Performing minimization step: 593. Total energy = 20616.2948 kcal/mol (20606.2106 without restraints) Performing minimization step: 594. Total energy = 20595.4484 kcal/mol (20585.3705 without restraints) Performing minimization step: 595. Total energy = 20574.6480 kcal/mol (20564.5765 without restraints) Performing minimization step: 596. Total energy = 20553.8942 kcal/mol (20543.8290 without restraints) Performing minimization step: 597. Total energy = 20533.1870 kcal/mol (20523.1282 without restraints) Performing minimization step: 598. Total energy = 20512.5250 kcal/mol (20502.4723 without restraints) Performing minimization step: 599. Total energy = 20491.9084 kcal/mol (20481.8619 without restraints) Performing minimization step: 600. Total energy = 20471.3374 kcal/mol (20461.2973 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 601. Total energy = 20450.8121 kcal/mol (20440.7781 without restraints) Performing minimization step: 602. Total energy = 20430.3313 kcal/mol (20420.3035 without restraints) Performing minimization step: 603. Total energy = 20409.8964 kcal/mol (20399.8748 without restraints) Performing minimization step: 604. Total energy = 20389.5061 kcal/mol (20379.4907 without restraints) Performing minimization step: 605. Total energy = 20369.1606 kcal/mol (20359.1513 without restraints) Performing minimization step: 606. Total energy = 20348.8597 kcal/mol (20338.8566 without restraints) Performing minimization step: 607. Total energy = 20328.6029 kcal/mol (20318.6059 without restraints) Performing minimization step: 608. Total energy = 20308.3911 kcal/mol (20298.4002 without restraints) Performing minimization step: 609. Total energy = 20288.2233 kcal/mol (20278.2385 without restraints) Performing minimization step: 610. Total energy = 20268.0999 kcal/mol (20258.1212 without restraints) Performing minimization step: 611. Total energy = 20248.0202 kcal/mol (20238.0475 without restraints) Performing minimization step: 612. Total energy = 20227.9841 kcal/mol (20218.0176 without restraints) Performing minimization step: 613. Total energy = 20207.9922 kcal/mol (20198.0317 without restraints) Performing minimization step: 614. Total energy = 20188.0438 kcal/mol (20178.0893 without restraints) Performing minimization step: 615. Total energy = 20168.1384 kcal/mol (20158.1899 without restraints) Performing minimization step: 616. Total energy = 20148.2762 kcal/mol (20138.3336 without restraints) Performing minimization step: 617. Total energy = 20128.4572 kcal/mol (20118.5206 without restraints) Performing minimization step: 618. Total energy = 20108.6811 kcal/mol (20098.7504 without restraints) Performing minimization step: 619. Total energy = 20088.9478 kcal/mol (20079.0231 without restraints) Performing minimization step: 620. Total energy = 20069.2569 kcal/mol (20059.3381 without restraints) Performing minimization step: 621. Total energy = 20049.6083 kcal/mol (20039.6955 without restraints) Performing minimization step: 622. Total energy = 20030.0026 kcal/mol (20020.0957 without restraints) Performing minimization step: 623. Total energy = 20010.4393 kcal/mol (20000.5383 without restraints) Performing minimization step: 624. Total energy = 19990.9183 kcal/mol (19981.0232 without restraints) Performing minimization step: 625. Total energy = 19971.4394 kcal/mol (19961.5501 without restraints) Performing minimization step: 626. Total energy = 19952.0027 kcal/mol (19942.1193 without restraints) Performing minimization step: 627. Total energy = 19932.6077 kcal/mol (19922.7301 without restraints) Performing minimization step: 628. Total energy = 19913.2542 kcal/mol (19903.3824 without restraints) Performing minimization step: 629. Total energy = 19893.9422 kcal/mol (19884.0762 without restraints) Performing minimization step: 630. Total energy = 19874.6713 kcal/mol (19864.8112 without restraints) Performing minimization step: 631. Total energy = 19855.4427 kcal/mol (19845.5883 without restraints) Performing minimization step: 632. Total energy = 19836.2548 kcal/mol (19826.4060 without restraints) Performing minimization step: 633. Total energy = 19817.1078 kcal/mol (19807.2648 without restraints) Performing minimization step: 634. Total energy = 19798.0019 kcal/mol (19788.1646 without restraints) Performing minimization step: 635. Total energy = 19778.9367 kcal/mol (19769.1052 without restraints) Performing minimization step: 636. Total energy = 19759.9120 kcal/mol (19750.0862 without restraints) Performing minimization step: 637. Total energy = 19740.9270 kcal/mol (19731.1067 without restraints) Performing minimization step: 638. Total energy = 19721.9835 kcal/mol (19712.1691 without restraints) Performing minimization step: 639. Total energy = 19703.0801 kcal/mol (19693.2714 without restraints) Performing minimization step: 640. Total energy = 19684.2173 kcal/mol (19674.4143 without restraints) Performing minimization step: 641. Total energy = 19665.3945 kcal/mol (19655.5970 without restraints) Performing minimization step: 642. Total energy = 19646.6113 kcal/mol (19636.8195 without restraints) Performing minimization step: 643. Total energy = 19627.8681 kcal/mol (19618.0822 without restraints) Performing minimization step: 644. Total energy = 19609.1644 kcal/mol (19599.3838 without restraints) Performing minimization step: 645. Total energy = 19590.5005 kcal/mol (19580.7257 without restraints) Performing minimization step: 646. Total energy = 19571.8758 kcal/mol (19562.1065 without restraints) Performing minimization step: 647. Total energy = 19553.2905 kcal/mol (19543.5267 without restraints) Performing minimization step: 648. Total energy = 19534.7438 kcal/mol (19524.9854 without restraints) Performing minimization step: 649. Total energy = 19516.2370 kcal/mol (19506.4844 without restraints) Performing minimization step: 650. Total energy = 19497.7691 kcal/mol (19488.0218 without restraints) Performing minimization step: 651. Total energy = 19479.3401 kcal/mol (19469.5984 without restraints) Performing minimization step: 652. Total energy = 19460.9494 kcal/mol (19451.2132 without restraints) Performing minimization step: 653. Total energy = 19442.5980 kcal/mol (19432.8674 without restraints) Performing minimization step: 654. Total energy = 19424.2855 kcal/mol (19414.5603 without restraints) Performing minimization step: 655. Total energy = 19406.0107 kcal/mol (19396.2910 without restraints) Performing minimization step: 656. Total energy = 19387.7752 kcal/mol (19378.0610 without restraints) Performing minimization step: 657. Total energy = 19369.5774 kcal/mol (19359.8686 without restraints) Performing minimization step: 658. Total energy = 19351.4176 kcal/mol (19341.7141 without restraints) Performing minimization step: 659. Total energy = 19333.2959 kcal/mol (19323.5980 without restraints) Performing minimization step: 660. Total energy = 19315.2116 kcal/mol (19305.5192 without restraints) Performing minimization step: 661. Total energy = 19297.1653 kcal/mol (19287.4782 without restraints) Performing minimization step: 662. Total energy = 19279.1570 kcal/mol (19269.4753 without restraints) Performing minimization step: 663. Total energy = 19261.1863 kcal/mol (19251.5100 without restraints) Performing minimization step: 664. Total energy = 19243.2534 kcal/mol (19233.5824 without restraints) Performing minimization step: 665. Total energy = 19225.3574 kcal/mol (19215.6919 without restraints) Performing minimization step: 666. Total energy = 19207.4987 kcal/mol (19197.8385 without restraints) Performing minimization step: 667. Total energy = 19189.6769 kcal/mol (19180.0220 without restraints) Performing minimization step: 668. Total energy = 19171.8919 kcal/mol (19162.2424 without restraints) Performing minimization step: 669. Total energy = 19154.1443 kcal/mol (19144.5001 without restraints) Performing minimization step: 670. Total energy = 19136.4330 kcal/mol (19126.7940 without restraints) Performing minimization step: 671. Total energy = 19118.7587 kcal/mol (19109.1250 without restraints) Performing minimization step: 672. Total energy = 19101.1211 kcal/mol (19091.4927 without restraints) Performing minimization step: 673. Total energy = 19083.5199 kcal/mol (19073.8968 without restraints) Performing minimization step: 674. Total energy = 19065.9555 kcal/mol (19056.3377 without restraints) Performing minimization step: 675. Total energy = 19048.4273 kcal/mol (19038.8147 without restraints) Performing minimization step: 676. Total energy = 19030.9356 kcal/mol (19021.3282 without restraints) Performing minimization step: 677. Total energy = 19013.4790 kcal/mol (19003.8768 without restraints) Performing minimization step: 678. Total energy = 18996.0588 kcal/mol (18986.4618 without restraints) Performing minimization step: 679. Total energy = 18978.6743 kcal/mol (18969.0825 without restraints) Performing minimization step: 680. Total energy = 18961.3259 kcal/mol (18951.7393 without restraints) Performing minimization step: 681. Total energy = 18944.0134 kcal/mol (18934.4320 without restraints) Performing minimization step: 682. Total energy = 18926.7364 kcal/mol (18917.1602 without restraints) Performing minimization step: 683. Total energy = 18909.4951 kcal/mol (18899.9242 without restraints) Performing minimization step: 684. Total energy = 18892.2895 kcal/mol (18882.7235 without restraints) Performing minimization step: 685. Total energy = 18875.1191 kcal/mol (18865.5583 without restraints) Performing minimization step: 686. Total energy = 18857.9834 kcal/mol (18848.4277 without restraints) Performing minimization step: 687. Total energy = 18840.8829 kcal/mol (18831.3326 without restraints) Performing minimization step: 688. Total energy = 18823.8177 kcal/mol (18814.2723 without restraints) Performing minimization step: 689. Total energy = 18806.7874 kcal/mol (18797.2471 without restraints) Performing minimization step: 690. Total energy = 18789.7916 kcal/mol (18780.2563 without restraints) Performing minimization step: 691. Total energy = 18772.8302 kcal/mol (18763.3001 without restraints) Performing minimization step: 692. Total energy = 18755.9037 kcal/mol (18746.3785 without restraints) Performing minimization step: 693. Total energy = 18739.0118 kcal/mol (18729.4918 without restraints) Performing minimization step: 694. Total energy = 18722.1544 kcal/mol (18712.6396 without restraints) Performing minimization step: 695. Total energy = 18705.3309 kcal/mol (18695.8208 without restraints) Performing minimization step: 696. Total energy = 18688.5408 kcal/mol (18679.0359 without restraints) Performing minimization step: 697. Total energy = 18671.7853 kcal/mol (18662.2854 without restraints) Performing minimization step: 698. Total energy = 18655.0642 kcal/mol (18645.5694 without restraints) Performing minimization step: 699. Total energy = 18638.3770 kcal/mol (18628.8871 without restraints) Performing minimization step: 700. Total energy = 18621.7235 kcal/mol (18612.2385 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 701. Total energy = 18605.1034 kcal/mol (18595.6234 without restraints) Performing minimization step: 702. Total energy = 18588.5174 kcal/mol (18579.0424 without restraints) Performing minimization step: 703. Total energy = 18571.9642 kcal/mol (18562.4940 without restraints) Performing minimization step: 704. Total energy = 18555.4453 kcal/mol (18545.9801 without restraints) Performing minimization step: 705. Total energy = 18538.9594 kcal/mol (18529.4993 without restraints) Performing minimization step: 706. Total energy = 18522.5068 kcal/mol (18513.0516 without restraints) Performing minimization step: 707. Total energy = 18506.0874 kcal/mol (18496.6370 without restraints) Performing minimization step: 708. Total energy = 18489.7009 kcal/mol (18480.2555 without restraints) Performing minimization step: 709. Total energy = 18473.3483 kcal/mol (18463.9081 without restraints) Performing minimization step: 710. Total energy = 18457.0281 kcal/mol (18447.5924 without restraints) Performing minimization step: 711. Total energy = 18440.7405 kcal/mol (18431.3097 without restraints) Performing minimization step: 712. Total energy = 18424.4855 kcal/mol (18415.0597 without restraints) Performing minimization step: 713. Total energy = 18408.2635 kcal/mol (18398.8426 without restraints) Performing minimization step: 714. Total energy = 18392.0737 kcal/mol (18382.6575 without restraints) Performing minimization step: 715. Total energy = 18375.9162 kcal/mol (18366.5049 without restraints) Performing minimization step: 716. Total energy = 18359.7911 kcal/mol (18350.3847 without restraints) Performing minimization step: 717. Total energy = 18343.6982 kcal/mol (18334.2965 without restraints) Performing minimization step: 718. Total energy = 18327.6375 kcal/mol (18318.2406 without restraints) Performing minimization step: 719. Total energy = 18311.6085 kcal/mol (18302.2164 without restraints) Performing minimization step: 720. Total energy = 18295.6119 kcal/mol (18286.2246 without restraints) Performing minimization step: 721. Total energy = 18279.6466 kcal/mol (18270.2641 without restraints) Performing minimization step: 722. Total energy = 18263.7138 kcal/mol (18254.3360 without restraints) Performing minimization step: 723. Total energy = 18247.8123 kcal/mol (18238.4392 without restraints) Performing minimization step: 724. Total energy = 18231.9433 kcal/mol (18222.5751 without restraints) Performing minimization step: 725. Total energy = 18216.1049 kcal/mol (18206.7414 without restraints) Performing minimization step: 726. Total energy = 18200.2982 kcal/mol (18190.9395 without restraints) Performing minimization step: 727. Total energy = 18184.5231 kcal/mol (18175.1691 without restraints) Performing minimization step: 728. Total energy = 18168.7793 kcal/mol (18159.4300 without restraints) Performing minimization step: 729. Total energy = 18153.0666 kcal/mol (18143.7220 without restraints) Performing minimization step: 730. Total energy = 18137.3845 kcal/mol (18128.0446 without restraints) Performing minimization step: 731. Total energy = 18121.7335 kcal/mol (18112.3983 without restraints) Performing minimization step: 732. Total energy = 18106.1128 kcal/mol (18096.7823 without restraints) Performing minimization step: 733. Total energy = 18090.5238 kcal/mol (18081.1980 without restraints) Performing minimization step: 734. Total energy = 18074.9656 kcal/mol (18065.6444 without restraints) Performing minimization step: 735. Total energy = 18059.4379 kcal/mol (18050.1213 without restraints) Performing minimization step: 736. Total energy = 18043.9411 kcal/mol (18034.6292 without restraints) Performing minimization step: 737. Total energy = 18028.4750 kcal/mol (18019.1679 without restraints) Performing minimization step: 738. Total energy = 18013.0388 kcal/mol (18003.7362 without restraints) Performing minimization step: 739. Total energy = 17997.6331 kcal/mol (17988.3352 without restraints) Performing minimization step: 740. Total energy = 17982.2571 kcal/mol (17972.9639 without restraints) Performing minimization step: 741. Total energy = 17966.9117 kcal/mol (17957.6229 without restraints) Performing minimization step: 742. Total energy = 17951.5967 kcal/mol (17942.3125 without restraints) Performing minimization step: 743. Total energy = 17936.3112 kcal/mol (17927.0316 without restraints) Performing minimization step: 744. Total energy = 17921.0561 kcal/mol (17911.7811 without restraints) Performing minimization step: 745. Total energy = 17905.8306 kcal/mol (17896.5602 without restraints) Performing minimization step: 746. Total energy = 17890.6349 kcal/mol (17881.3690 without restraints) Performing minimization step: 747. Total energy = 17875.4683 kcal/mol (17866.2070 without restraints) Performing minimization step: 748. Total energy = 17860.3321 kcal/mol (17851.0754 without restraints) Performing minimization step: 749. Total energy = 17845.2252 kcal/mol (17835.9730 without restraints) Performing minimization step: 750. Total energy = 17830.1476 kcal/mol (17820.8999 without restraints) Performing minimization step: 751. Total energy = 17815.0991 kcal/mol (17805.8559 without restraints) Performing minimization step: 752. Total energy = 17800.0801 kcal/mol (17790.8415 without restraints) Performing minimization step: 753. Total energy = 17785.0904 kcal/mol (17775.8562 without restraints) Performing minimization step: 754. Total energy = 17770.1297 kcal/mol (17760.9000 without restraints) Performing minimization step: 755. Total energy = 17755.1982 kcal/mol (17745.9728 without restraints) Performing minimization step: 756. Total energy = 17740.2952 kcal/mol (17731.0745 without restraints) Performing minimization step: 757. Total energy = 17725.4219 kcal/mol (17716.2056 without restraints) Performing minimization step: 758. Total energy = 17710.5768 kcal/mol (17701.3650 without restraints) Performing minimization step: 759. Total energy = 17695.7607 kcal/mol (17686.5533 without restraints) Performing minimization step: 760. Total energy = 17680.9729 kcal/mol (17671.7700 without restraints) Performing minimization step: 761. Total energy = 17666.2137 kcal/mol (17657.0152 without restraints) Performing minimization step: 762. Total energy = 17651.4831 kcal/mol (17642.2891 without restraints) Performing minimization step: 763. Total energy = 17636.7809 kcal/mol (17627.5913 without restraints) Performing minimization step: 764. Total energy = 17622.1071 kcal/mol (17612.9220 without restraints) Performing minimization step: 765. Total energy = 17607.4612 kcal/mol (17598.2803 without restraints) Performing minimization step: 766. Total energy = 17592.8436 kcal/mol (17583.6672 without restraints) Performing minimization step: 767. Total energy = 17578.2540 kcal/mol (17569.0819 without restraints) Performing minimization step: 768. Total energy = 17563.6929 kcal/mol (17554.5252 without restraints) Performing minimization step: 769. Total energy = 17549.1591 kcal/mol (17539.9958 without restraints) Performing minimization step: 770. Total energy = 17534.6529 kcal/mol (17525.4940 without restraints) Performing minimization step: 771. Total energy = 17520.1743 kcal/mol (17511.0197 without restraints) Performing minimization step: 772. Total energy = 17505.7235 kcal/mol (17496.5731 without restraints) Performing minimization step: 773. Total energy = 17491.3008 kcal/mol (17482.1551 without restraints) Performing minimization step: 774. Total energy = 17476.9050 kcal/mol (17467.7634 without restraints) Performing minimization step: 775. Total energy = 17462.5373 kcal/mol (17453.4001 without restraints) Performing minimization step: 776. Total energy = 17448.1968 kcal/mol (17439.0639 without restraints) Performing minimization step: 777. Total energy = 17433.8834 kcal/mol (17424.7549 without restraints) Performing minimization step: 778. Total energy = 17419.5975 kcal/mol (17410.4733 without restraints) Performing minimization step: 779. Total energy = 17405.3383 kcal/mol (17396.2183 without restraints) Performing minimization step: 780. Total energy = 17391.1063 kcal/mol (17381.9907 without restraints) Performing minimization step: 781. Total energy = 17376.9017 kcal/mol (17367.7903 without restraints) Performing minimization step: 782. Total energy = 17362.7238 kcal/mol (17353.6167 without restraints) Performing minimization step: 783. Total energy = 17348.5725 kcal/mol (17339.4696 without restraints) Performing minimization step: 784. Total energy = 17334.4482 kcal/mol (17325.3495 without restraints) Performing minimization step: 785. Total energy = 17320.3503 kcal/mol (17311.2558 without restraints) Performing minimization step: 786. Total energy = 17306.2790 kcal/mol (17297.1888 without restraints) Performing minimization step: 787. Total energy = 17292.2345 kcal/mol (17283.1486 without restraints) Performing minimization step: 788. Total energy = 17278.2173 kcal/mol (17269.1355 without restraints) Performing minimization step: 789. Total energy = 17264.2259 kcal/mol (17255.1484 without restraints) Performing minimization step: 790. Total energy = 17250.2611 kcal/mol (17241.1878 without restraints) Performing minimization step: 791. Total energy = 17236.3219 kcal/mol (17227.2528 without restraints) Performing minimization step: 792. Total energy = 17222.4089 kcal/mol (17213.3440 without restraints) Performing minimization step: 793. Total energy = 17208.5218 kcal/mol (17199.4610 without restraints) Performing minimization step: 794. Total energy = 17194.6613 kcal/mol (17185.6049 without restraints) Performing minimization step: 795. Total energy = 17180.8270 kcal/mol (17171.7746 without restraints) Performing minimization step: 796. Total energy = 17167.0184 kcal/mol (17157.9704 without restraints) Performing minimization step: 797. Total energy = 17153.2358 kcal/mol (17144.1918 without restraints) Performing minimization step: 798. Total energy = 17139.4784 kcal/mol (17130.4385 without restraints) Performing minimization step: 799. Total energy = 17125.7469 kcal/mol (17116.7111 without restraints) Performing minimization step: 800. Total energy = 17112.0411 kcal/mol (17103.0095 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 801. Total energy = 17098.3602 kcal/mol (17089.3327 without restraints) Performing minimization step: 802. Total energy = 17084.7052 kcal/mol (17075.6819 without restraints) Performing minimization step: 803. Total energy = 17071.0755 kcal/mol (17062.0562 without restraints) Performing minimization step: 804. Total energy = 17057.4718 kcal/mol (17048.4566 without restraints) Performing minimization step: 805. Total energy = 17043.8927 kcal/mol (17034.8816 without restraints) Performing minimization step: 806. Total energy = 17030.3387 kcal/mol (17021.3317 without restraints) Performing minimization step: 807. Total energy = 17016.8101 kcal/mol (17007.8073 without restraints) Performing minimization step: 808. Total energy = 17003.3066 kcal/mol (16994.3079 without restraints) Performing minimization step: 809. Total energy = 16989.8280 kcal/mol (16980.8333 without restraints) Performing minimization step: 810. Total energy = 16976.3740 kcal/mol (16967.3831 without restraints) Performing minimization step: 811. Total energy = 16962.9448 kcal/mol (16953.9582 without restraints) Performing minimization step: 812. Total energy = 16949.5406 kcal/mol (16940.5580 without restraints) Performing minimization step: 813. Total energy = 16936.1617 kcal/mol (16927.1832 without restraints) Performing minimization step: 814. Total energy = 16922.8076 kcal/mol (16913.8332 without restraints) Performing minimization step: 815. Total energy = 16909.4779 kcal/mol (16900.5074 without restraints) Performing minimization step: 816. Total energy = 16896.1722 kcal/mol (16887.2058 without restraints) Performing minimization step: 817. Total energy = 16882.8910 kcal/mol (16873.9286 without restraints) Performing minimization step: 818. Total energy = 16869.6342 kcal/mol (16860.6757 without restraints) Performing minimization step: 819. Total energy = 16856.4020 kcal/mol (16847.4477 without restraints) Performing minimization step: 820. Total energy = 16843.1936 kcal/mol (16834.2433 without restraints) Performing minimization step: 821. Total energy = 16830.0096 kcal/mol (16821.0630 without restraints) Performing minimization step: 822. Total energy = 16816.8492 kcal/mol (16807.9068 without restraints) Performing minimization step: 823. Total energy = 16803.7132 kcal/mol (16794.7747 without restraints) Performing minimization step: 824. Total energy = 16790.6009 kcal/mol (16781.6663 without restraints) Performing minimization step: 825. Total energy = 16777.5125 kcal/mol (16768.5818 without restraints) Performing minimization step: 826. Total energy = 16764.4477 kcal/mol (16755.5211 without restraints) Performing minimization step: 827. Total energy = 16751.4066 kcal/mol (16742.4840 without restraints) Performing minimization step: 828. Total energy = 16738.3894 kcal/mol (16729.4707 without restraints) Performing minimization step: 829. Total energy = 16725.3960 kcal/mol (16716.4812 without restraints) Performing minimization step: 830. Total energy = 16712.4257 kcal/mol (16703.5148 without restraints) Performing minimization step: 831. Total energy = 16699.4788 kcal/mol (16690.5718 without restraints) Performing minimization step: 832. Total energy = 16686.5558 kcal/mol (16677.6528 without restraints) Performing minimization step: 833. Total energy = 16673.6560 kcal/mol (16664.7569 without restraints) Performing minimization step: 834. Total energy = 16660.7793 kcal/mol (16651.8840 without restraints) Performing minimization step: 835. Total energy = 16647.9255 kcal/mol (16639.0340 without restraints) Performing minimization step: 836. Total energy = 16635.0952 kcal/mol (16626.2078 without restraints) Performing minimization step: 837. Total energy = 16622.2881 kcal/mol (16613.4045 without restraints) Performing minimization step: 838. Total energy = 16609.5045 kcal/mol (16600.6248 without restraints) Performing minimization step: 839. Total energy = 16596.7436 kcal/mol (16587.8677 without restraints) Performing minimization step: 840. Total energy = 16584.0055 kcal/mol (16575.1335 without restraints) Performing minimization step: 841. Total energy = 16571.2902 kcal/mol (16562.4220 without restraints) Performing minimization step: 842. Total energy = 16558.5976 kcal/mol (16549.7335 without restraints) Performing minimization step: 843. Total energy = 16545.9280 kcal/mol (16537.0673 without restraints) Performing minimization step: 844. Total energy = 16533.2805 kcal/mol (16524.4240 without restraints) Performing minimization step: 845. Total energy = 16520.6560 kcal/mol (16511.8033 without restraints) Performing minimization step: 846. Total energy = 16508.0542 kcal/mol (16499.2053 without restraints) Performing minimization step: 847. Total energy = 16495.4747 kcal/mol (16486.6296 without restraints) Performing minimization step: 848. Total energy = 16482.9176 kcal/mol (16474.0764 without restraints) Performing minimization step: 849. Total energy = 16470.3833 kcal/mol (16461.5458 without restraints) Performing minimization step: 850. Total energy = 16457.8707 kcal/mol (16449.0369 without restraints) Performing minimization step: 851. Total energy = 16445.3802 kcal/mol (16436.5501 without restraints) Performing minimization step: 852. Total energy = 16432.9122 kcal/mol (16424.0862 without restraints) Performing minimization step: 853. Total energy = 16420.4663 kcal/mol (16411.6439 without restraints) Performing minimization step: 854. Total energy = 16408.0418 kcal/mol (16399.2231 without restraints) Performing minimization step: 855. Total energy = 16395.6396 kcal/mol (16386.8247 without restraints) Performing minimization step: 856. Total energy = 16383.2592 kcal/mol (16374.4481 without restraints) Performing minimization step: 857. Total energy = 16370.9009 kcal/mol (16362.0937 without restraints) Performing minimization step: 858. Total energy = 16358.5644 kcal/mol (16349.7608 without restraints) Performing minimization step: 859. Total energy = 16346.2497 kcal/mol (16337.4497 without restraints) Performing minimization step: 860. Total energy = 16333.9566 kcal/mol (16325.1602 without restraints) Performing minimization step: 861. Total energy = 16321.6846 kcal/mol (16312.8921 without restraints) Performing minimization step: 862. Total energy = 16309.4344 kcal/mol (16300.6456 without restraints) Performing minimization step: 863. Total energy = 16297.2054 kcal/mol (16288.4204 without restraints) Performing minimization step: 864. Total energy = 16284.9979 kcal/mol (16276.2166 without restraints) Performing minimization step: 865. Total energy = 16272.8120 kcal/mol (16264.0344 without restraints) Performing minimization step: 866. Total energy = 16260.6473 kcal/mol (16251.8734 without restraints) Performing minimization step: 867. Total energy = 16248.5044 kcal/mol (16239.7341 without restraints) Performing minimization step: 868. Total energy = 16236.3826 kcal/mol (16227.6159 without restraints) Performing minimization step: 869. Total energy = 16224.2812 kcal/mol (16215.5183 without restraints) Performing minimization step: 870. Total energy = 16212.2012 kcal/mol (16203.4420 without restraints) Performing minimization step: 871. Total energy = 16200.1424 kcal/mol (16191.3869 without restraints) Performing minimization step: 872. Total energy = 16188.1046 kcal/mol (16179.3527 without restraints) Performing minimization step: 873. Total energy = 16176.0874 kcal/mol (16167.3392 without restraints) Performing minimization step: 874. Total energy = 16164.0921 kcal/mol (16155.3476 without restraints) Performing minimization step: 875. Total energy = 16152.1164 kcal/mol (16143.3755 without restraints) Performing minimization step: 876. Total energy = 16140.1613 kcal/mol (16131.4240 without restraints) Performing minimization step: 877. Total energy = 16128.2271 kcal/mol (16119.4934 without restraints) Performing minimization step: 878. Total energy = 16116.3130 kcal/mol (16107.5829 without restraints) Performing minimization step: 879. Total energy = 16104.4203 kcal/mol (16095.6938 without restraints) Performing minimization step: 880. Total energy = 16092.5476 kcal/mol (16083.8249 without restraints) Performing minimization step: 881. Total energy = 16080.6956 kcal/mol (16071.9764 without restraints) Performing minimization step: 882. Total energy = 16068.8640 kcal/mol (16060.1484 without restraints) Performing minimization step: 883. Total energy = 16057.0523 kcal/mol (16048.3405 without restraints) Performing minimization step: 884. Total energy = 16045.2607 kcal/mol (16036.5522 without restraints) Performing minimization step: 885. Total energy = 16033.4896 kcal/mol (16024.7847 without restraints) Performing minimization step: 886. Total energy = 16021.7389 kcal/mol (16013.0376 without restraints) Performing minimization step: 887. Total energy = 16010.0087 kcal/mol (16001.3110 without restraints) Performing minimization step: 888. Total energy = 15998.2979 kcal/mol (15989.6038 without restraints) Performing minimization step: 889. Total energy = 15986.6074 kcal/mol (15977.9168 without restraints) Performing minimization step: 890. Total energy = 15974.9363 kcal/mol (15966.2494 without restraints) Performing minimization step: 891. Total energy = 15963.2855 kcal/mol (15954.6020 without restraints) Performing minimization step: 892. Total energy = 15951.6539 kcal/mol (15942.9739 without restraints) Performing minimization step: 893. Total energy = 15940.0424 kcal/mol (15931.3660 without restraints) Performing minimization step: 894. Total energy = 15928.4507 kcal/mol (15919.7779 without restraints) Performing minimization step: 895. Total energy = 15916.8789 kcal/mol (15908.2096 without restraints) Performing minimization step: 896. Total energy = 15905.3264 kcal/mol (15896.6606 without restraints) Performing minimization step: 897. Total energy = 15893.7937 kcal/mol (15885.1314 without restraints) Performing minimization step: 898. Total energy = 15882.2801 kcal/mol (15873.6212 without restraints) Performing minimization step: 899. Total energy = 15870.7863 kcal/mol (15862.1310 without restraints) Performing minimization step: 900. Total energy = 15859.3114 kcal/mol (15850.6594 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 901. Total energy = 15847.8561 kcal/mol (15839.2078 without restraints) Performing minimization step: 902. Total energy = 15836.4199 kcal/mol (15827.7751 without restraints) Performing minimization step: 903. Total energy = 15825.0033 kcal/mol (15816.3620 without restraints) Performing minimization step: 904. Total energy = 15813.6056 kcal/mol (15804.9678 without restraints) Performing minimization step: 905. Total energy = 15802.2271 kcal/mol (15793.5927 without restraints) Performing minimization step: 906. Total energy = 15790.8678 kcal/mol (15782.2369 without restraints) Performing minimization step: 907. Total energy = 15779.5271 kcal/mol (15770.8996 without restraints) Performing minimization step: 908. Total energy = 15768.2052 kcal/mol (15759.5811 without restraints) Performing minimization step: 909. Total energy = 15756.9022 kcal/mol (15748.2817 without restraints) Performing minimization step: 910. Total energy = 15745.6190 kcal/mol (15737.0019 without restraints) Performing minimization step: 911. Total energy = 15734.3540 kcal/mol (15725.7403 without restraints) Performing minimization step: 912. Total energy = 15723.1079 kcal/mol (15714.4977 without restraints) Performing minimization step: 913. Total energy = 15711.8803 kcal/mol (15703.2735 without restraints) Performing minimization step: 914. Total energy = 15700.6714 kcal/mol (15692.0681 without restraints) Performing minimization step: 915. Total energy = 15689.4807 kcal/mol (15680.8808 without restraints) Performing minimization step: 916. Total energy = 15678.3094 kcal/mol (15669.7129 without restraints) Performing minimization step: 917. Total energy = 15667.1561 kcal/mol (15658.5630 without restraints) Performing minimization step: 918. Total energy = 15656.0212 kcal/mol (15647.4315 without restraints) Performing minimization step: 919. Total energy = 15644.9043 kcal/mol (15636.3180 without restraints) Performing minimization step: 920. Total energy = 15633.8061 kcal/mol (15625.2232 without restraints) Performing minimization step: 921. Total energy = 15622.7262 kcal/mol (15614.1467 without restraints) Performing minimization step: 922. Total energy = 15611.6649 kcal/mol (15603.0888 without restraints) Performing minimization step: 923. Total energy = 15600.6216 kcal/mol (15592.0489 without restraints) Performing minimization step: 924. Total energy = 15589.5964 kcal/mol (15581.0271 without restraints) Performing minimization step: 925. Total energy = 15578.5893 kcal/mol (15570.0234 without restraints) Performing minimization step: 926. Total energy = 15567.6002 kcal/mol (15559.0377 without restraints) Performing minimization step: 927. Total energy = 15556.6296 kcal/mol (15548.0704 without restraints) Performing minimization step: 928. Total energy = 15545.6762 kcal/mol (15537.1203 without restraints) Performing minimization step: 929. Total energy = 15534.7412 kcal/mol (15526.1887 without restraints) Performing minimization step: 930. Total energy = 15523.8239 kcal/mol (15515.2747 without restraints) Performing minimization step: 931. Total energy = 15512.9248 kcal/mol (15504.3789 without restraints) Performing minimization step: 932. Total energy = 15502.0427 kcal/mol (15493.5002 without restraints) Performing minimization step: 933. Total energy = 15491.1784 kcal/mol (15482.6391 without restraints) Performing minimization step: 934. Total energy = 15480.3315 kcal/mol (15471.7955 without restraints) Performing minimization step: 935. Total energy = 15469.5024 kcal/mol (15460.9698 without restraints) Performing minimization step: 936. Total energy = 15458.6909 kcal/mol (15450.1616 without restraints) Performing minimization step: 937. Total energy = 15447.8966 kcal/mol (15439.3704 without restraints) Performing minimization step: 938. Total energy = 15437.1198 kcal/mol (15428.5972 without restraints) Performing minimization step: 939. Total energy = 15426.3606 kcal/mol (15417.8413 without restraints) Performing minimization step: 940. Total energy = 15415.6187 kcal/mol (15407.1027 without restraints) Performing minimization step: 941. Total energy = 15404.8943 kcal/mol (15396.3814 without restraints) Performing minimization step: 942. Total energy = 15394.1870 kcal/mol (15385.6775 without restraints) Performing minimization step: 943. Total energy = 15383.4971 kcal/mol (15374.9909 without restraints) Performing minimization step: 944. Total energy = 15372.8247 kcal/mol (15364.3220 without restraints) Performing minimization step: 945. Total energy = 15362.1695 kcal/mol (15353.6698 without restraints) Performing minimization step: 946. Total energy = 15351.5305 kcal/mol (15343.0341 without restraints) Performing minimization step: 947. Total energy = 15340.9092 kcal/mol (15332.4161 without restraints) Performing minimization step: 948. Total energy = 15330.3049 kcal/mol (15321.8151 without restraints) Performing minimization step: 949. Total energy = 15319.7177 kcal/mol (15311.2311 without restraints) Performing minimization step: 950. Total energy = 15309.1471 kcal/mol (15300.6637 without restraints) Performing minimization step: 951. Total energy = 15298.5933 kcal/mol (15290.1132 without restraints) Performing minimization step: 952. Total energy = 15288.0567 kcal/mol (15279.5798 without restraints) Performing minimization step: 953. Total energy = 15277.5370 kcal/mol (15269.0633 without restraints) Performing minimization step: 954. Total energy = 15267.0335 kcal/mol (15258.5631 without restraints) Performing minimization step: 955. Total energy = 15256.5462 kcal/mol (15248.0791 without restraints) Performing minimization step: 956. Total energy = 15246.0758 kcal/mol (15237.6120 without restraints) Performing minimization step: 957. Total energy = 15235.6220 kcal/mol (15227.1613 without restraints) Performing minimization step: 958. Total energy = 15225.1853 kcal/mol (15216.7276 without restraints) Performing minimization step: 959. Total energy = 15214.7652 kcal/mol (15206.3110 without restraints) Performing minimization step: 960. Total energy = 15204.3612 kcal/mol (15195.9101 without restraints) Performing minimization step: 961. Total energy = 15193.9734 kcal/mol (15185.5254 without restraints) Performing minimization step: 962. Total energy = 15183.6022 kcal/mol (15175.1576 without restraints) Performing minimization step: 963. Total energy = 15173.2473 kcal/mol (15164.8058 without restraints) Performing minimization step: 964. Total energy = 15162.9085 kcal/mol (15154.4702 without restraints) Performing minimization step: 965. Total energy = 15152.5859 kcal/mol (15144.1509 without restraints) Performing minimization step: 966. Total energy = 15142.2800 kcal/mol (15133.8481 without restraints) Performing minimization step: 967. Total energy = 15131.9899 kcal/mol (15123.5610 without restraints) Performing minimization step: 968. Total energy = 15121.7155 kcal/mol (15113.2899 without restraints) Performing minimization step: 969. Total energy = 15111.4575 kcal/mol (15103.0351 without restraints) Performing minimization step: 970. Total energy = 15101.2157 kcal/mol (15092.7964 without restraints) Performing minimization step: 971. Total energy = 15090.9894 kcal/mol (15082.5733 without restraints) Performing minimization step: 972. Total energy = 15080.7787 kcal/mol (15072.3658 without restraints) Performing minimization step: 973. Total energy = 15070.5844 kcal/mol (15062.1748 without restraints) Performing minimization step: 974. Total energy = 15060.4065 kcal/mol (15051.9998 without restraints) Performing minimization step: 975. Total energy = 15050.2438 kcal/mol (15041.8402 without restraints) Performing minimization step: 976. Total energy = 15040.0970 kcal/mol (15031.6966 without restraints) Performing minimization step: 977. Total energy = 15029.9659 kcal/mol (15021.5685 without restraints) Performing minimization step: 978. Total energy = 15019.8506 kcal/mol (15011.4564 without restraints) Performing minimization step: 979. Total energy = 15009.7515 kcal/mol (15001.3605 without restraints) Performing minimization step: 980. Total energy = 14999.6675 kcal/mol (14991.2794 without restraints) Performing minimization step: 981. Total energy = 14989.5987 kcal/mol (14981.2138 without restraints) Performing minimization step: 982. Total energy = 14979.5458 kcal/mol (14971.1643 without restraints) Performing minimization step: 983. Total energy = 14969.5088 kcal/mol (14961.1303 without restraints) Performing minimization step: 984. Total energy = 14959.4868 kcal/mol (14951.1112 without restraints) Performing minimization step: 985. Total energy = 14949.4792 kcal/mol (14941.1068 without restraints) Performing minimization step: 986. Total energy = 14939.4884 kcal/mol (14931.1191 without restraints) Performing minimization step: 987. Total energy = 14929.5130 kcal/mol (14921.1467 without restraints) Performing minimization step: 988. Total energy = 14919.5524 kcal/mol (14911.1894 without restraints) Performing minimization step: 989. Total energy = 14909.6072 kcal/mol (14901.2471 without restraints) Performing minimization step: 990. Total energy = 14899.6774 kcal/mol (14891.3204 without restraints) Performing minimization step: 991. Total energy = 14889.7626 kcal/mol (14881.4088 without restraints) Performing minimization step: 992. Total energy = 14879.8619 kcal/mol (14871.5111 without restraints) Performing minimization step: 993. Total energy = 14869.9776 kcal/mol (14861.6300 without restraints) Performing minimization step: 994. Total energy = 14860.1079 kcal/mol (14851.7632 without restraints) Performing minimization step: 995. Total energy = 14850.2529 kcal/mol (14841.9112 without restraints) Performing minimization step: 996. Total energy = 14840.4124 kcal/mol (14832.0737 without restraints) Performing minimization step: 997. Total energy = 14830.5877 kcal/mol (14822.2522 without restraints) Performing minimization step: 998. Total energy = 14820.7775 kcal/mol (14812.4450 without restraints) Performing minimization step: 999. Total energy = 14810.9821 kcal/mol (14802.6526 without restraints) Performing minimization step: 1000. Total energy = 14801.2015 kcal/mol (14792.8749 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 14791.4356 kcal/mol (14783.1123 without restraints) Performing minimization step: 1002. Total energy = 14781.6850 kcal/mol (14773.3647 without restraints) Performing minimization step: 1003. Total energy = 14771.9489 kcal/mol (14763.6316 without restraints) Performing minimization step: 1004. Total energy = 14762.2270 kcal/mol (14753.9127 without restraints) Performing minimization step: 1005. Total energy = 14752.5200 kcal/mol (14744.2087 without restraints) Performing minimization step: 1006. Total energy = 14742.8272 kcal/mol (14734.5189 without restraints) Performing minimization step: 1007. Total energy = 14733.1493 kcal/mol (14724.8440 without restraints) Performing minimization step: 1008. Total energy = 14723.4860 kcal/mol (14715.1837 without restraints) Performing minimization step: 1009. Total energy = 14713.8374 kcal/mol (14705.5381 without restraints) Performing minimization step: 1010. Total energy = 14704.2030 kcal/mol (14695.9068 without restraints) Performing minimization step: 1011. Total energy = 14694.5832 kcal/mol (14686.2899 without restraints) Performing minimization step: 1012. Total energy = 14684.9774 kcal/mol (14676.6871 without restraints) Performing minimization step: 1013. Total energy = 14675.3862 kcal/mol (14667.0989 without restraints) Performing minimization step: 1014. Total energy = 14665.8095 kcal/mol (14657.5251 without restraints) Performing minimization step: 1015. Total energy = 14656.2470 kcal/mol (14647.9656 without restraints) Performing minimization step: 1016. Total energy = 14646.6983 kcal/mol (14638.4199 without restraints) Performing minimization step: 1017. Total energy = 14637.1635 kcal/mol (14628.8881 without restraints) Performing minimization step: 1018. Total energy = 14627.6432 kcal/mol (14619.3707 without restraints) Performing minimization step: 1019. Total energy = 14618.1369 kcal/mol (14609.8674 without restraints) Performing minimization step: 1020. Total energy = 14608.6447 kcal/mol (14600.3782 without restraints) Performing minimization step: 1021. Total energy = 14599.1663 kcal/mol (14590.9027 without restraints) Performing minimization step: 1022. Total energy = 14589.7023 kcal/mol (14581.4417 without restraints) Performing minimization step: 1023. Total energy = 14580.2518 kcal/mol (14571.9942 without restraints) Performing minimization step: 1024. Total energy = 14570.8155 kcal/mol (14562.5608 without restraints) Performing minimization step: 1025. Total energy = 14561.3933 kcal/mol (14553.1414 without restraints) Performing minimization step: 1026. Total energy = 14551.9845 kcal/mol (14543.7359 without restraints) Performing minimization step: 1027. Total energy = 14542.5898 kcal/mol (14534.3440 without restraints) Performing minimization step: 1028. Total energy = 14533.2089 kcal/mol (14524.9659 without restraints) Performing minimization step: 1029. Total energy = 14523.8419 kcal/mol (14515.6019 without restraints) Performing minimization step: 1030. Total energy = 14514.4889 kcal/mol (14506.2518 without restraints) Performing minimization step: 1031. Total energy = 14505.1490 kcal/mol (14496.9149 without restraints) Performing minimization step: 1032. Total energy = 14495.8232 kcal/mol (14487.5921 without restraints) Performing minimization step: 1033. Total energy = 14486.5106 kcal/mol (14478.2823 without restraints) Performing minimization step: 1034. Total energy = 14477.2111 kcal/mol (14468.9857 without restraints) Performing minimization step: 1035. Total energy = 14467.9255 kcal/mol (14459.7030 without restraints) Performing minimization step: 1036. Total energy = 14458.6537 kcal/mol (14450.4341 without restraints) Performing minimization step: 1037. Total energy = 14449.3953 kcal/mol (14441.1787 without restraints) Performing minimization step: 1038. Total energy = 14440.1503 kcal/mol (14431.9366 without restraints) Performing minimization step: 1039. Total energy = 14430.9189 kcal/mol (14422.7080 without restraints) Performing minimization step: 1040. Total energy = 14421.7007 kcal/mol (14413.4927 without restraints) Performing minimization step: 1041. Total energy = 14412.4958 kcal/mol (14404.2908 without restraints) Performing minimization step: 1042. Total energy = 14403.3045 kcal/mol (14395.1023 without restraints) Performing minimization step: 1043. Total energy = 14394.1260 kcal/mol (14385.9265 without restraints) Performing minimization step: 1044. Total energy = 14384.9610 kcal/mol (14376.7646 without restraints) Performing minimization step: 1045. Total energy = 14375.8088 kcal/mol (14367.6151 without restraints) Performing minimization step: 1046. Total energy = 14366.6704 kcal/mol (14358.4797 without restraints) Performing minimization step: 1047. Total energy = 14357.5450 kcal/mol (14349.3572 without restraints) Performing minimization step: 1048. Total energy = 14348.4326 kcal/mol (14340.2478 without restraints) Performing minimization step: 1049. Total energy = 14339.3336 kcal/mol (14331.1515 without restraints) Performing minimization step: 1050. Total energy = 14330.2473 kcal/mol (14322.0681 without restraints) Performing minimization step: 1051. Total energy = 14321.1742 kcal/mol (14312.9977 without restraints) Performing minimization step: 1052. Total energy = 14312.1141 kcal/mol (14303.9405 without restraints) Performing minimization step: 1053. Total energy = 14303.0670 kcal/mol (14294.8963 without restraints) Performing minimization step: 1054. Total energy = 14294.0327 kcal/mol (14285.8648 without restraints) Performing minimization step: 1055. Total energy = 14285.0118 kcal/mol (14276.8468 without restraints) Performing minimization step: 1056. Total energy = 14276.0028 kcal/mol (14267.8407 without restraints) Performing minimization step: 1057. Total energy = 14267.0073 kcal/mol (14258.8480 without restraints) Performing minimization step: 1058. Total energy = 14258.0246 kcal/mol (14249.8681 without restraints) Performing minimization step: 1059. Total energy = 14249.0546 kcal/mol (14240.9010 without restraints) Performing minimization step: 1060. Total energy = 14240.0976 kcal/mol (14231.9469 without restraints) Performing minimization step: 1061. Total energy = 14231.1534 kcal/mol (14223.0054 without restraints) Performing minimization step: 1062. Total energy = 14222.2214 kcal/mol (14214.0762 without restraints) Performing minimization step: 1063. Total energy = 14213.3022 kcal/mol (14205.1598 without restraints) Performing minimization step: 1064. Total energy = 14204.3953 kcal/mol (14196.2557 without restraints) Performing minimization step: 1065. Total energy = 14195.5015 kcal/mol (14187.3650 without restraints) Performing minimization step: 1066. Total energy = 14186.6206 kcal/mol (14178.4867 without restraints) Performing minimization step: 1067. Total energy = 14177.7516 kcal/mol (14169.6206 without restraints) Performing minimization step: 1068. Total energy = 14168.8951 kcal/mol (14160.7669 without restraints) Performing minimization step: 1069. Total energy = 14160.0519 kcal/mol (14151.9265 without restraints) Performing minimization step: 1070. Total energy = 14151.2203 kcal/mol (14143.0977 without restraints) Performing minimization step: 1071. Total energy = 14142.4009 kcal/mol (14134.2808 without restraints) Performing minimization step: 1072. Total energy = 14133.5941 kcal/mol (14125.4770 without restraints) Performing minimization step: 1073. Total energy = 14124.7999 kcal/mol (14116.6857 without restraints) Performing minimization step: 1074. Total energy = 14116.0178 kcal/mol (14107.9061 without restraints) Performing minimization step: 1075. Total energy = 14107.2480 kcal/mol (14099.1393 without restraints) Performing minimization step: 1076. Total energy = 14098.4910 kcal/mol (14090.3850 without restraints) Performing minimization step: 1077. Total energy = 14089.7463 kcal/mol (14081.6432 without restraints) Performing minimization step: 1078. Total energy = 14081.0141 kcal/mol (14072.9137 without restraints) Performing minimization step: 1079. Total energy = 14072.2935 kcal/mol (14064.1958 without restraints) Performing minimization step: 1080. Total energy = 14063.5839 kcal/mol (14055.4891 without restraints) Performing minimization step: 1081. Total energy = 14054.8875 kcal/mol (14046.7955 without restraints) Performing minimization step: 1082. Total energy = 14046.2033 kcal/mol (14038.1141 without restraints) Performing minimization step: 1083. Total energy = 14037.5313 kcal/mol (14029.4447 without restraints) Performing minimization step: 1084. Total energy = 14028.8710 kcal/mol (14020.7872 without restraints) Performing minimization step: 1085. Total energy = 14020.2224 kcal/mol (14012.1415 without restraints) Performing minimization step: 1086. Total energy = 14011.5860 kcal/mol (14003.5078 without restraints) Performing minimization step: 1087. Total energy = 14002.9617 kcal/mol (13994.8862 without restraints) Performing minimization step: 1088. Total energy = 13994.3498 kcal/mol (13986.2770 without restraints) Performing minimization step: 1089. Total energy = 13985.7493 kcal/mol (13977.6793 without restraints) Performing minimization step: 1090. Total energy = 13977.1608 kcal/mol (13969.0935 without restraints) Performing minimization step: 1091. Total energy = 13968.5841 kcal/mol (13960.5195 without restraints) Performing minimization step: 1092. Total energy = 13960.0194 kcal/mol (13951.9575 without restraints) Performing minimization step: 1093. Total energy = 13951.4666 kcal/mol (13943.4075 without restraints) Performing minimization step: 1094. Total energy = 13942.9254 kcal/mol (13934.8690 without restraints) Performing minimization step: 1095. Total energy = 13934.3957 kcal/mol (13926.3419 without restraints) Performing minimization step: 1096. Total energy = 13925.8777 kcal/mol (13917.8267 without restraints) Performing minimization step: 1097. Total energy = 13917.3712 kcal/mol (13909.3229 without restraints) Performing minimization step: 1098. Total energy = 13908.8767 kcal/mol (13900.8315 without restraints) Performing minimization step: 1099. Total energy = 13900.3943 kcal/mol (13892.3515 without restraints) Performing minimization step: 1100. Total energy = 13891.9227 kcal/mol (13883.8826 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 13883.4631 kcal/mol (13875.4257 without restraints) Performing minimization step: 1102. Total energy = 13875.0147 kcal/mol (13866.9800 without restraints) Performing minimization step: 1103. Total energy = 13866.5778 kcal/mol (13858.5458 without restraints) Performing minimization step: 1104. Total energy = 13858.1526 kcal/mol (13850.1233 without restraints) Performing minimization step: 1105. Total energy = 13849.7390 kcal/mol (13841.7127 without restraints) Performing minimization step: 1106. Total energy = 13841.3369 kcal/mol (13833.3131 without restraints) Performing minimization step: 1107. Total energy = 13832.9461 kcal/mol (13824.9249 without restraints) Performing minimization step: 1108. Total energy = 13824.5665 kcal/mol (13816.5480 without restraints) Performing minimization step: 1109. Total energy = 13816.1983 kcal/mol (13808.1826 without restraints) Performing minimization step: 1110. Total energy = 13807.8416 kcal/mol (13799.8286 without restraints) Performing minimization step: 1111. Total energy = 13799.4962 kcal/mol (13791.4858 without restraints) Performing minimization step: 1112. Total energy = 13791.1621 kcal/mol (13783.1543 without restraints) Performing minimization step: 1113. Total energy = 13782.8389 kcal/mol (13774.8338 without restraints) Performing minimization step: 1114. Total energy = 13774.5273 kcal/mol (13766.5249 without restraints) Performing minimization step: 1115. Total energy = 13766.2270 kcal/mol (13758.2272 without restraints) Performing minimization step: 1116. Total energy = 13757.9375 kcal/mol (13749.9403 without restraints) Performing minimization step: 1117. Total energy = 13749.6594 kcal/mol (13741.6651 without restraints) Performing minimization step: 1118. Total energy = 13741.3927 kcal/mol (13733.4011 without restraints) Performing minimization step: 1119. Total energy = 13733.1368 kcal/mol (13725.1477 without restraints) Performing minimization step: 1120. Total energy = 13724.8920 kcal/mol (13716.9057 without restraints) Performing minimization step: 1121. Total energy = 13716.6586 kcal/mol (13708.6749 without restraints) Performing minimization step: 1122. Total energy = 13708.4360 kcal/mol (13700.4549 without restraints) Performing minimization step: 1123. Total energy = 13700.2244 kcal/mol (13692.2460 without restraints) Performing minimization step: 1124. Total energy = 13692.0238 kcal/mol (13684.0480 without restraints) Performing minimization step: 1125. Total energy = 13683.8342 kcal/mol (13675.8611 without restraints) Performing minimization step: 1126. Total energy = 13675.6556 kcal/mol (13667.6854 without restraints) Performing minimization step: 1127. Total energy = 13667.4880 kcal/mol (13659.5203 without restraints) Performing minimization step: 1128. Total energy = 13659.3312 kcal/mol (13651.3660 without restraints) Performing minimization step: 1129. Total energy = 13651.1854 kcal/mol (13643.2229 without restraints) Performing minimization step: 1130. Total energy = 13643.0500 kcal/mol (13635.0901 without restraints) Performing minimization step: 1131. Total energy = 13634.9256 kcal/mol (13626.9684 without restraints) Performing minimization step: 1132. Total energy = 13626.8127 kcal/mol (13618.8581 without restraints) Performing minimization step: 1133. Total energy = 13618.7099 kcal/mol (13610.7580 without restraints) Performing minimization step: 1134. Total energy = 13610.6179 kcal/mol (13602.6686 without restraints) Performing minimization step: 1135. Total energy = 13602.5365 kcal/mol (13594.5898 without restraints) Performing minimization step: 1136. Total energy = 13594.4660 kcal/mol (13586.5220 without restraints) Performing minimization step: 1137. Total energy = 13586.4062 kcal/mol (13578.4648 without restraints) Performing minimization step: 1138. Total energy = 13578.3568 kcal/mol (13570.4180 without restraints) Performing minimization step: 1139. Total energy = 13570.3179 kcal/mol (13562.3815 without restraints) Performing minimization step: 1140. Total energy = 13562.2897 kcal/mol (13554.3561 without restraints) Performing minimization step: 1141. Total energy = 13554.2720 kcal/mol (13546.3410 without restraints) Performing minimization step: 1142. Total energy = 13546.2649 kcal/mol (13538.3364 without restraints) Performing minimization step: 1143. Total energy = 13538.2680 kcal/mol (13530.3424 without restraints) Performing minimization step: 1144. Total energy = 13530.2834 kcal/mol (13522.3602 without restraints) Performing minimization step: 1145. Total energy = 13522.3079 kcal/mol (13514.3873 without restraints) Performing minimization step: 1146. Total energy = 13514.3432 kcal/mol (13506.4252 without restraints) Performing minimization step: 1147. Total energy = 13506.3891 kcal/mol (13498.4738 without restraints) Performing minimization step: 1148. Total energy = 13498.4451 kcal/mol (13490.5323 without restraints) Performing minimization step: 1149. Total energy = 13490.5118 kcal/mol (13482.6017 without restraints) Performing minimization step: 1150. Total energy = 13482.5888 kcal/mol (13474.6812 without restraints) Performing minimization step: 1151. Total energy = 13474.6756 kcal/mol (13466.7706 without restraints) Performing minimization step: 1152. Total energy = 13466.7733 kcal/mol (13458.8710 without restraints) Performing minimization step: 1153. Total energy = 13458.8818 kcal/mol (13450.9819 without restraints) Performing minimization step: 1154. Total energy = 13451.0002 kcal/mol (13443.1028 without restraints) Performing minimization step: 1155. Total energy = 13443.1286 kcal/mol (13435.2340 without restraints) Performing minimization step: 1156. Total energy = 13435.2673 kcal/mol (13427.3754 without restraints) Performing minimization step: 1157. Total energy = 13427.4164 kcal/mol (13419.5267 without restraints) Performing minimization step: 1158. Total energy = 13419.5753 kcal/mol (13411.6883 without restraints) Performing minimization step: 1159. Total energy = 13411.7448 kcal/mol (13403.8605 without restraints) Performing minimization step: 1160. Total energy = 13403.9241 kcal/mol (13396.0421 without restraints) Performing minimization step: 1161. Total energy = 13396.1139 kcal/mol (13388.2346 without restraints) Performing minimization step: 1162. Total energy = 13388.3138 kcal/mol (13380.4371 without restraints) Performing minimization step: 1163. Total energy = 13380.5238 kcal/mol (13372.6497 without restraints) Performing minimization step: 1164. Total energy = 13372.7442 kcal/mol (13364.8727 without restraints) Performing minimization step: 1165. Total energy = 13364.9740 kcal/mol (13357.1050 without restraints) Performing minimization step: 1166. Total energy = 13357.2141 kcal/mol (13349.3476 without restraints) Performing minimization step: 1167. Total energy = 13349.4639 kcal/mol (13341.6000 without restraints) Performing minimization step: 1168. Total energy = 13341.7246 kcal/mol (13333.8634 without restraints) Performing minimization step: 1169. Total energy = 13333.9949 kcal/mol (13326.1361 without restraints) Performing minimization step: 1170. Total energy = 13326.2752 kcal/mol (13318.4190 without restraints) Performing minimization step: 1171. Total energy = 13318.5659 kcal/mol (13310.7122 without restraints) Performing minimization step: 1172. Total energy = 13310.8660 kcal/mol (13303.0149 without restraints) Performing minimization step: 1173. Total energy = 13303.1759 kcal/mol (13295.3273 without restraints) Performing minimization step: 1174. Total energy = 13295.4958 kcal/mol (13287.6496 without restraints) Performing minimization step: 1175. Total energy = 13287.8252 kcal/mol (13279.9817 without restraints) Performing minimization step: 1176. Total energy = 13280.1649 kcal/mol (13272.3239 without restraints) Performing minimization step: 1177. Total energy = 13272.5141 kcal/mol (13264.6756 without restraints) Performing minimization step: 1178. Total energy = 13264.8734 kcal/mol (13257.0375 without restraints) Performing minimization step: 1179. Total energy = 13257.2428 kcal/mol (13249.4094 without restraints) Performing minimization step: 1180. Total energy = 13249.6215 kcal/mol (13241.7907 without restraints) Performing minimization step: 1181. Total energy = 13242.0102 kcal/mol (13234.1818 without restraints) Performing minimization step: 1182. Total energy = 13234.4083 kcal/mol (13226.5824 without restraints) Performing minimization step: 1183. Total energy = 13226.8162 kcal/mol (13218.9929 without restraints) Performing minimization step: 1184. Total energy = 13219.2336 kcal/mol (13211.4129 without restraints) Performing minimization step: 1185. Total energy = 13211.6607 kcal/mol (13203.8424 without restraints) Performing minimization step: 1186. Total energy = 13204.0976 kcal/mol (13196.2819 without restraints) Performing minimization step: 1187. Total energy = 13196.5441 kcal/mol (13188.7308 without restraints) Performing minimization step: 1188. Total energy = 13188.9998 kcal/mol (13181.1891 without restraints) Performing minimization step: 1189. Total energy = 13181.4653 kcal/mol (13173.6569 without restraints) Performing minimization step: 1190. Total energy = 13173.9400 kcal/mol (13166.1343 without restraints) Performing minimization step: 1191. Total energy = 13166.4243 kcal/mol (13158.6210 without restraints) Performing minimization step: 1192. Total energy = 13158.9182 kcal/mol (13151.1175 without restraints) Performing minimization step: 1193. Total energy = 13151.4219 kcal/mol (13143.6237 without restraints) Performing minimization step: 1194. Total energy = 13143.9350 kcal/mol (13136.1393 without restraints) Performing minimization step: 1195. Total energy = 13136.4576 kcal/mol (13128.6645 without restraints) Performing minimization step: 1196. Total energy = 13128.9896 kcal/mol (13121.1989 without restraints) Performing minimization step: 1197. Total energy = 13121.5310 kcal/mol (13113.7428 without restraints) Performing minimization step: 1198. Total energy = 13114.0820 kcal/mol (13106.2963 without restraints) Performing minimization step: 1199. Total energy = 13106.6422 kcal/mol (13098.8590 without restraints) Performing minimization step: 1200. Total energy = 13099.2121 kcal/mol (13091.4313 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 13091.7905 kcal/mol (13084.0123 without restraints) Performing minimization step: 1202. Total energy = 13084.3790 kcal/mol (13076.6033 without restraints) Performing minimization step: 1203. Total energy = 13076.9768 kcal/mol (13069.2035 without restraints) Performing minimization step: 1204. Total energy = 13069.5837 kcal/mol (13061.8129 without restraints) Performing minimization step: 1205. Total energy = 13062.1998 kcal/mol (13054.4315 without restraints) Performing minimization step: 1206. Total energy = 13054.8252 kcal/mol (13047.0593 without restraints) Performing minimization step: 1207. Total energy = 13047.4600 kcal/mol (13039.6967 without restraints) Performing minimization step: 1208. Total energy = 13040.1035 kcal/mol (13032.3425 without restraints) Performing minimization step: 1209. Total energy = 13032.7565 kcal/mol (13024.9980 without restraints) Performing minimization step: 1210. Total energy = 13025.4190 kcal/mol (13017.6629 without restraints) Performing minimization step: 1211. Total energy = 13018.0901 kcal/mol (13010.3367 without restraints) Performing minimization step: 1212. Total energy = 13010.7707 kcal/mol (13003.0197 without restraints) Performing minimization step: 1213. Total energy = 13003.4605 kcal/mol (12995.7119 without restraints) Performing minimization step: 1214. Total energy = 12996.1592 kcal/mol (12988.4130 without restraints) Performing minimization step: 1215. Total energy = 12988.8670 kcal/mol (12981.1233 without restraints) Performing minimization step: 1216. Total energy = 12981.5845 kcal/mol (12973.8433 without restraints) Performing minimization step: 1217. Total energy = 12974.3104 kcal/mol (12966.5717 without restraints) Performing minimization step: 1218. Total energy = 12967.0454 kcal/mol (12959.3090 without restraints) Performing minimization step: 1219. Total energy = 12959.7890 kcal/mol (12952.0552 without restraints) Performing minimization step: 1220. Total energy = 12952.5420 kcal/mol (12944.8107 without restraints) Performing minimization step: 1221. Total energy = 12945.3038 kcal/mol (12937.5748 without restraints) Performing minimization step: 1222. Total energy = 12938.0746 kcal/mol (12930.3482 without restraints) Performing minimization step: 1223. Total energy = 12930.8545 kcal/mol (12923.1304 without restraints) Performing minimization step: 1224. Total energy = 12923.6437 kcal/mol (12915.9221 without restraints) Performing minimization step: 1225. Total energy = 12916.4416 kcal/mol (12908.7224 without restraints) Performing minimization step: 1226. Total energy = 12909.2486 kcal/mol (12901.5319 without restraints) Performing minimization step: 1227. Total energy = 12902.0643 kcal/mol (12894.3501 without restraints) Performing minimization step: 1228. Total energy = 12894.8882 kcal/mol (12887.1764 without restraints) Performing minimization step: 1229. Total energy = 12887.7215 kcal/mol (12880.0123 without restraints) Performing minimization step: 1230. Total energy = 12880.5637 kcal/mol (12872.8567 without restraints) Performing minimization step: 1231. Total energy = 12873.4143 kcal/mol (12865.7097 without restraints) Performing minimization step: 1232. Total energy = 12866.2741 kcal/mol (12858.5720 without restraints) Performing minimization step: 1233. Total energy = 12859.1429 kcal/mol (12851.4434 without restraints) Performing minimization step: 1234. Total energy = 12852.0202 kcal/mol (12844.3230 without restraints) Performing minimization step: 1235. Total energy = 12844.9063 kcal/mol (12837.2116 without restraints) Performing minimization step: 1236. Total energy = 12837.8011 kcal/mol (12830.1087 without restraints) Performing minimization step: 1237. Total energy = 12830.7046 kcal/mol (12823.0147 without restraints) Performing minimization step: 1238. Total energy = 12823.6170 kcal/mol (12815.9295 without restraints) Performing minimization step: 1239. Total energy = 12816.5377 kcal/mol (12808.8526 without restraints) Performing minimization step: 1240. Total energy = 12809.4669 kcal/mol (12801.7842 without restraints) Performing minimization step: 1241. Total energy = 12802.4051 kcal/mol (12794.7249 without restraints) Performing minimization step: 1242. Total energy = 12795.3519 kcal/mol (12787.6740 without restraints) Performing minimization step: 1243. Total energy = 12788.3074 kcal/mol (12780.6320 without restraints) Performing minimization step: 1244. Total energy = 12781.2713 kcal/mol (12773.5983 without restraints) Performing minimization step: 1245. Total energy = 12774.2434 kcal/mol (12766.5727 without restraints) Performing minimization step: 1246. Total energy = 12767.2242 kcal/mol (12759.5557 without restraints) Performing minimization step: 1247. Total energy = 12760.2129 kcal/mol (12752.5471 without restraints) Performing minimization step: 1248. Total energy = 12753.2108 kcal/mol (12745.5474 without restraints) Performing minimization step: 1249. Total energy = 12746.2173 kcal/mol (12738.5563 without restraints) Performing minimization step: 1250. Total energy = 12739.2324 kcal/mol (12731.5738 without restraints) Performing minimization step: 1251. Total energy = 12732.2560 kcal/mol (12724.5997 without restraints) Performing minimization step: 1252. Total energy = 12725.2877 kcal/mol (12717.6339 without restraints) Performing minimization step: 1253. Total energy = 12718.3280 kcal/mol (12710.6766 without restraints) Performing minimization step: 1254. Total energy = 12711.3767 kcal/mol (12703.7277 without restraints) Performing minimization step: 1255. Total energy = 12704.4342 kcal/mol (12696.7876 without restraints) Performing minimization step: 1256. Total energy = 12697.4994 kcal/mol (12689.8552 without restraints) Performing minimization step: 1257. Total energy = 12690.5736 kcal/mol (12682.9316 without restraints) Performing minimization step: 1258. Total energy = 12683.6558 kcal/mol (12676.0162 without restraints) Performing minimization step: 1259. Total energy = 12676.7463 kcal/mol (12669.1092 without restraints) Performing minimization step: 1260. Total energy = 12669.8455 kcal/mol (12662.2108 without restraints) Performing minimization step: 1261. Total energy = 12662.9529 kcal/mol (12655.3206 without restraints) Performing minimization step: 1262. Total energy = 12656.0687 kcal/mol (12648.4387 without restraints) Performing minimization step: 1263. Total energy = 12649.1928 kcal/mol (12641.5653 without restraints) Performing minimization step: 1264. Total energy = 12642.3254 kcal/mol (12634.7002 without restraints) Performing minimization step: 1265. Total energy = 12635.4659 kcal/mol (12627.8432 without restraints) Performing minimization step: 1266. Total energy = 12628.6148 kcal/mol (12620.9944 without restraints) Performing minimization step: 1267. Total energy = 12621.7714 kcal/mol (12614.1533 without restraints) Performing minimization step: 1268. Total energy = 12614.9368 kcal/mol (12607.3212 without restraints) Performing minimization step: 1269. Total energy = 12608.1103 kcal/mol (12600.4968 without restraints) Performing minimization step: 1270. Total energy = 12601.2913 kcal/mol (12593.6804 without restraints) Performing minimization step: 1271. Total energy = 12594.4818 kcal/mol (12586.8733 without restraints) Performing minimization step: 1272. Total energy = 12587.6796 kcal/mol (12580.0734 without restraints) Performing minimization step: 1273. Total energy = 12580.8857 kcal/mol (12573.2818 without restraints) Performing minimization step: 1274. Total energy = 12574.1001 kcal/mol (12566.4986 without restraints) Performing minimization step: 1275. Total energy = 12567.3230 kcal/mol (12559.7239 without restraints) Performing minimization step: 1276. Total energy = 12560.5537 kcal/mol (12552.9568 without restraints) Performing minimization step: 1277. Total energy = 12553.7919 kcal/mol (12546.1975 without restraints) Performing minimization step: 1278. Total energy = 12547.0387 kcal/mol (12539.4466 without restraints) Performing minimization step: 1279. Total energy = 12540.2932 kcal/mol (12532.7037 without restraints) Performing minimization step: 1280. Total energy = 12533.5558 kcal/mol (12525.9685 without restraints) Performing minimization step: 1281. Total energy = 12526.8261 kcal/mol (12519.2411 without restraints) Performing minimization step: 1282. Total energy = 12520.1048 kcal/mol (12512.5222 without restraints) Performing minimization step: 1283. Total energy = 12513.3919 kcal/mol (12505.8116 without restraints) Performing minimization step: 1284. Total energy = 12506.6865 kcal/mol (12499.1087 without restraints) Performing minimization step: 1285. Total energy = 12499.9893 kcal/mol (12492.4138 without restraints) Performing minimization step: 1286. Total energy = 12493.3001 kcal/mol (12485.7270 without restraints) Performing minimization step: 1287. Total energy = 12486.6187 kcal/mol (12479.0478 without restraints) Performing minimization step: 1288. Total energy = 12479.9451 kcal/mol (12472.3766 without restraints) Performing minimization step: 1289. Total energy = 12473.2794 kcal/mol (12465.7132 without restraints) Performing minimization step: 1290. Total energy = 12466.6216 kcal/mol (12459.0577 without restraints) Performing minimization step: 1291. Total energy = 12459.9717 kcal/mol (12452.4103 without restraints) Performing minimization step: 1292. Total energy = 12453.3296 kcal/mol (12445.7703 without restraints) Performing minimization step: 1293. Total energy = 12446.6954 kcal/mol (12439.1385 without restraints) Performing minimization step: 1294. Total energy = 12440.0692 kcal/mol (12432.5146 without restraints) Performing minimization step: 1295. Total energy = 12433.4506 kcal/mol (12425.8984 without restraints) Performing minimization step: 1296. Total energy = 12426.8407 kcal/mol (12419.2909 without restraints) Performing minimization step: 1297. Total energy = 12420.2379 kcal/mol (12412.6904 without restraints) Performing minimization step: 1298. Total energy = 12413.6427 kcal/mol (12406.0975 without restraints) Performing minimization step: 1299. Total energy = 12407.0555 kcal/mol (12399.5126 without restraints) Performing minimization step: 1300. Total energy = 12400.4760 kcal/mol (12392.9354 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 12393.9044 kcal/mol (12386.3664 without restraints) Performing minimization step: 1302. Total energy = 12387.3406 kcal/mol (12379.8047 without restraints) Performing minimization step: 1303. Total energy = 12380.7844 kcal/mol (12373.2507 without restraints) Performing minimization step: 1304. Total energy = 12374.2357 kcal/mol (12366.7044 without restraints) Performing minimization step: 1305. Total energy = 12367.6944 kcal/mol (12360.1655 without restraints) Performing minimization step: 1306. Total energy = 12361.1611 kcal/mol (12353.6345 without restraints) Performing minimization step: 1307. Total energy = 12354.6353 kcal/mol (12347.1110 without restraints) Performing minimization step: 1308. Total energy = 12348.1171 kcal/mol (12340.5952 without restraints) Performing minimization step: 1309. Total energy = 12341.6068 kcal/mol (12334.0871 without restraints) Performing minimization step: 1310. Total energy = 12335.1039 kcal/mol (12327.5865 without restraints) Performing minimization step: 1311. Total energy = 12328.6083 kcal/mol (12321.0932 without restraints) Performing minimization step: 1312. Total energy = 12322.1205 kcal/mol (12314.6078 without restraints) Performing minimization step: 1313. Total energy = 12315.6402 kcal/mol (12308.1297 without restraints) Performing minimization step: 1314. Total energy = 12309.1675 kcal/mol (12301.6594 without restraints) Performing minimization step: 1315. Total energy = 12302.7029 kcal/mol (12295.1970 without restraints) Performing minimization step: 1316. Total energy = 12296.2451 kcal/mol (12288.7416 without restraints) Performing minimization step: 1317. Total energy = 12289.7949 kcal/mol (12282.2937 without restraints) Performing minimization step: 1318. Total energy = 12283.3522 kcal/mol (12275.8533 without restraints) Performing minimization step: 1319. Total energy = 12276.9177 kcal/mol (12269.4212 without restraints) Performing minimization step: 1320. Total energy = 12270.4902 kcal/mol (12262.9959 without restraints) Performing minimization step: 1321. Total energy = 12264.0701 kcal/mol (12256.5781 without restraints) Performing minimization step: 1322. Total energy = 12257.6574 kcal/mol (12250.1677 without restraints) Performing minimization step: 1323. Total energy = 12251.2519 kcal/mol (12243.7645 without restraints) Performing minimization step: 1324. Total energy = 12244.8547 kcal/mol (12237.3697 without restraints) Performing minimization step: 1325. Total energy = 12238.4646 kcal/mol (12230.9817 without restraints) Performing minimization step: 1326. Total energy = 12232.0822 kcal/mol (12224.6018 without restraints) Performing minimization step: 1327. Total energy = 12225.7071 kcal/mol (12218.2289 without restraints) Performing minimization step: 1328. Total energy = 12219.3393 kcal/mol (12211.8633 without restraints) Performing minimization step: 1329. Total energy = 12212.9785 kcal/mol (12205.5048 without restraints) Performing minimization step: 1330. Total energy = 12206.6250 kcal/mol (12199.1536 without restraints) Performing minimization step: 1331. Total energy = 12200.2787 kcal/mol (12192.8096 without restraints) Performing minimization step: 1332. Total energy = 12193.9400 kcal/mol (12186.4730 without restraints) Performing minimization step: 1333. Total energy = 12187.6084 kcal/mol (12180.1437 without restraints) Performing minimization step: 1334. Total energy = 12181.2841 kcal/mol (12173.8218 without restraints) Performing minimization step: 1335. Total energy = 12174.9670 kcal/mol (12167.5070 without restraints) Performing minimization step: 1336. Total energy = 12168.6574 kcal/mol (12161.1996 without restraints) Performing minimization step: 1337. Total energy = 12162.3551 kcal/mol (12154.8998 without restraints) Performing minimization step: 1338. Total energy = 12156.0596 kcal/mol (12148.6064 without restraints) Performing minimization step: 1339. Total energy = 12149.7720 kcal/mol (12142.3211 without restraints) Performing minimization step: 1340. Total energy = 12143.4914 kcal/mol (12136.0428 without restraints) Performing minimization step: 1341. Total energy = 12137.2180 kcal/mol (12129.7716 without restraints) Performing minimization step: 1342. Total energy = 12130.9516 kcal/mol (12123.5076 without restraints) Performing minimization step: 1343. Total energy = 12124.6924 kcal/mol (12117.2506 without restraints) Performing minimization step: 1344. Total energy = 12118.4406 kcal/mol (12111.0010 without restraints) Performing minimization step: 1345. Total energy = 12112.1957 kcal/mol (12104.7582 without restraints) Performing minimization step: 1346. Total energy = 12105.9582 kcal/mol (12098.5231 without restraints) Performing minimization step: 1347. Total energy = 12099.7276 kcal/mol (12092.2948 without restraints) Performing minimization step: 1348. Total energy = 12093.5039 kcal/mol (12086.0734 without restraints) Performing minimization step: 1349. Total energy = 12087.2881 kcal/mol (12079.8598 without restraints) Performing minimization step: 1350. Total energy = 12081.0791 kcal/mol (12073.6532 without restraints) Performing minimization step: 1351. Total energy = 12074.8774 kcal/mol (12067.4538 without restraints) Performing minimization step: 1352. Total energy = 12068.6830 kcal/mol (12061.2615 without restraints) Performing minimization step: 1353. Total energy = 12062.4956 kcal/mol (12055.0764 without restraints) Performing minimization step: 1354. Total energy = 12056.3145 kcal/mol (12048.8974 without restraints) Performing minimization step: 1355. Total energy = 12050.1410 kcal/mol (12042.7263 without restraints) Performing minimization step: 1356. Total energy = 12043.9744 kcal/mol (12036.5620 without restraints) Performing minimization step: 1357. Total energy = 12037.8150 kcal/mol (12030.4048 without restraints) Performing minimization step: 1358. Total energy = 12031.6627 kcal/mol (12024.2548 without restraints) Performing minimization step: 1359. Total energy = 12025.5179 kcal/mol (12018.1122 without restraints) Performing minimization step: 1360. Total energy = 12019.3793 kcal/mol (12011.9760 without restraints) Performing minimization step: 1361. Total energy = 12013.2481 kcal/mol (12005.8469 without restraints) Performing minimization step: 1362. Total energy = 12007.1235 kcal/mol (11999.7245 without restraints) Performing minimization step: 1363. Total energy = 12001.0059 kcal/mol (11993.6092 without restraints) Performing minimization step: 1364. Total energy = 11994.8953 kcal/mol (11987.5009 without restraints) Performing minimization step: 1365. Total energy = 11988.7917 kcal/mol (11981.3994 without restraints) Performing minimization step: 1366. Total energy = 11982.6953 kcal/mol (11975.3055 without restraints) Performing minimization step: 1367. Total energy = 11976.6058 kcal/mol (11969.2181 without restraints) Performing minimization step: 1368. Total energy = 11970.5234 kcal/mol (11963.1379 without restraints) Performing minimization step: 1369. Total energy = 11964.4472 kcal/mol (11957.0639 without restraints) Performing minimization step: 1370. Total energy = 11958.3779 kcal/mol (11950.9970 without restraints) Performing minimization step: 1371. Total energy = 11952.3157 kcal/mol (11944.9370 without restraints) Performing minimization step: 1372. Total energy = 11946.2604 kcal/mol (11938.8838 without restraints) Performing minimization step: 1373. Total energy = 11940.2117 kcal/mol (11932.8373 without restraints) Performing minimization step: 1374. Total energy = 11934.1701 kcal/mol (11926.7980 without restraints) Performing minimization step: 1375. Total energy = 11928.1354 kcal/mol (11920.7656 without restraints) Performing minimization step: 1376. Total energy = 11922.1072 kcal/mol (11914.7397 without restraints) Performing minimization step: 1377. Total energy = 11916.0860 kcal/mol (11908.7206 without restraints) Performing minimization step: 1378. Total energy = 11910.0715 kcal/mol (11902.7083 without restraints) Performing minimization step: 1379. Total energy = 11904.0636 kcal/mol (11896.7027 without restraints) Performing minimization step: 1380. Total energy = 11898.0625 kcal/mol (11890.7038 without restraints) Performing minimization step: 1381. Total energy = 11892.0682 kcal/mol (11884.7117 without restraints) Performing minimization step: 1382. Total energy = 11886.0809 kcal/mol (11878.7267 without restraints) Performing minimization step: 1383. Total energy = 11880.1004 kcal/mol (11872.7485 without restraints) Performing minimization step: 1384. Total energy = 11874.1269 kcal/mol (11866.7773 without restraints) Performing minimization step: 1385. Total energy = 11868.1599 kcal/mol (11860.8124 without restraints) Performing minimization step: 1386. Total energy = 11862.1996 kcal/mol (11854.8541 without restraints) Performing minimization step: 1387. Total energy = 11856.2455 kcal/mol (11848.9024 without restraints) Performing minimization step: 1388. Total energy = 11850.2983 kcal/mol (11842.9575 without restraints) Performing minimization step: 1389. Total energy = 11844.3584 kcal/mol (11837.0197 without restraints) Performing minimization step: 1390. Total energy = 11838.4248 kcal/mol (11831.0883 without restraints) Performing minimization step: 1391. Total energy = 11832.4978 kcal/mol (11825.1635 without restraints) Performing minimization step: 1392. Total energy = 11826.5774 kcal/mol (11819.2453 without restraints) Performing minimization step: 1393. Total energy = 11820.6637 kcal/mol (11813.3339 without restraints) Performing minimization step: 1394. Total energy = 11814.7566 kcal/mol (11807.4289 without restraints) Performing minimization step: 1395. Total energy = 11808.8560 kcal/mol (11801.5307 without restraints) Performing minimization step: 1396. Total energy = 11802.9626 kcal/mol (11795.6394 without restraints) Performing minimization step: 1397. Total energy = 11797.0752 kcal/mol (11789.7543 without restraints) Performing minimization step: 1398. Total energy = 11791.1948 kcal/mol (11783.8761 without restraints) Performing minimization step: 1399. Total energy = 11785.3208 kcal/mol (11778.0041 without restraints) Performing minimization step: 1400. Total energy = 11779.4531 kcal/mol (11772.1387 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 11773.5925 kcal/mol (11766.2804 without restraints) Performing minimization step: 1402. Total energy = 11767.7383 kcal/mol (11760.4283 without restraints) Performing minimization step: 1403. Total energy = 11761.8905 kcal/mol (11754.5827 without restraints) Performing minimization step: 1404. Total energy = 11756.0493 kcal/mol (11748.7438 without restraints) Performing minimization step: 1405. Total energy = 11750.2142 kcal/mol (11742.9108 without restraints) Performing minimization step: 1406. Total energy = 11744.3860 kcal/mol (11737.0848 without restraints) Performing minimization step: 1407. Total energy = 11738.5644 kcal/mol (11731.2653 without restraints) Performing minimization step: 1408. Total energy = 11732.7490 kcal/mol (11725.4522 without restraints) Performing minimization step: 1409. Total energy = 11726.9399 kcal/mol (11719.6454 without restraints) Performing minimization step: 1410. Total energy = 11721.1377 kcal/mol (11713.8453 without restraints) Performing minimization step: 1411. Total energy = 11715.3408 kcal/mol (11708.0504 without restraints) Performing minimization step: 1412. Total energy = 11709.5515 kcal/mol (11702.2635 without restraints) Performing minimization step: 1413. Total energy = 11703.7684 kcal/mol (11696.4827 without restraints) Performing minimization step: 1414. Total energy = 11697.9915 kcal/mol (11690.7079 without restraints) Performing minimization step: 1415. Total energy = 11692.2213 kcal/mol (11684.9400 without restraints) Performing minimization step: 1416. Total energy = 11686.4574 kcal/mol (11679.1782 without restraints) Performing minimization step: 1417. Total energy = 11680.7005 kcal/mol (11673.4235 without restraints) Performing minimization step: 1418. Total energy = 11674.9495 kcal/mol (11667.6747 without restraints) Performing minimization step: 1419. Total energy = 11669.2054 kcal/mol (11661.9328 without restraints) Performing minimization step: 1420. Total energy = 11663.4671 kcal/mol (11656.1967 without restraints) Performing minimization step: 1421. Total energy = 11657.7354 kcal/mol (11650.4671 without restraints) Performing minimization step: 1422. Total energy = 11652.0100 kcal/mol (11644.7439 without restraints) Performing minimization step: 1423. Total energy = 11646.2910 kcal/mol (11639.0272 without restraints) Performing minimization step: 1424. Total energy = 11640.5790 kcal/mol (11633.3173 without restraints) Performing minimization step: 1425. Total energy = 11634.8728 kcal/mol (11627.6133 without restraints) Performing minimization step: 1426. Total energy = 11629.1727 kcal/mol (11621.9153 without restraints) Performing minimization step: 1427. Total energy = 11623.4793 kcal/mol (11616.2241 without restraints) Performing minimization step: 1428. Total energy = 11617.7920 kcal/mol (11610.5390 without restraints) Performing minimization step: 1429. Total energy = 11612.1106 kcal/mol (11604.8598 without restraints) Performing minimization step: 1430. Total energy = 11606.4357 kcal/mol (11599.1873 without restraints) Performing minimization step: 1431. Total energy = 11600.7675 kcal/mol (11593.5211 without restraints) Performing minimization step: 1432. Total energy = 11595.1052 kcal/mol (11587.8609 without restraints) Performing minimization step: 1433. Total energy = 11589.4492 kcal/mol (11582.2071 without restraints) Performing minimization step: 1434. Total energy = 11583.7993 kcal/mol (11576.5594 without restraints) Performing minimization step: 1435. Total energy = 11578.1564 kcal/mol (11570.9188 without restraints) Performing minimization step: 1436. Total energy = 11572.5192 kcal/mol (11565.2836 without restraints) Performing minimization step: 1437. Total energy = 11566.8881 kcal/mol (11559.6548 without restraints) Performing minimization step: 1438. Total energy = 11561.2630 kcal/mol (11554.0317 without restraints) Performing minimization step: 1439. Total energy = 11555.6442 kcal/mol (11548.4151 without restraints) Performing minimization step: 1440. Total energy = 11550.0316 kcal/mol (11542.8047 without restraints) Performing minimization step: 1441. Total energy = 11544.4252 kcal/mol (11537.2005 without restraints) Performing minimization step: 1442. Total energy = 11538.8251 kcal/mol (11531.6025 without restraints) Performing minimization step: 1443. Total energy = 11533.2311 kcal/mol (11526.0107 without restraints) Performing minimization step: 1444. Total energy = 11527.6432 kcal/mol (11520.4250 without restraints) Performing minimization step: 1445. Total energy = 11522.0617 kcal/mol (11514.8457 without restraints) Performing minimization step: 1446. Total energy = 11516.4862 kcal/mol (11509.2723 without restraints) Performing minimization step: 1447. Total energy = 11510.9169 kcal/mol (11503.7051 without restraints) Performing minimization step: 1448. Total energy = 11505.3532 kcal/mol (11498.1436 without restraints) Performing minimization step: 1449. Total energy = 11499.7958 kcal/mol (11492.5883 without restraints) Performing minimization step: 1450. Total energy = 11494.2451 kcal/mol (11487.0399 without restraints) Performing minimization step: 1451. Total energy = 11488.7003 kcal/mol (11481.4972 without restraints) Performing minimization step: 1452. Total energy = 11483.1614 kcal/mol (11475.9603 without restraints) Performing minimization step: 1453. Total energy = 11477.6285 kcal/mol (11470.4297 without restraints) Performing minimization step: 1454. Total energy = 11472.1017 kcal/mol (11464.9051 without restraints) Performing minimization step: 1455. Total energy = 11466.5811 kcal/mol (11459.3866 without restraints) Performing minimization step: 1456. Total energy = 11461.0666 kcal/mol (11453.8743 without restraints) Performing minimization step: 1457. Total energy = 11455.5581 kcal/mol (11448.3680 without restraints) Performing minimization step: 1458. Total energy = 11450.0556 kcal/mol (11442.8676 without restraints) Performing minimization step: 1459. Total energy = 11444.5588 kcal/mol (11437.3730 without restraints) Performing minimization step: 1460. Total energy = 11439.0684 kcal/mol (11431.8847 without restraints) Performing minimization step: 1461. Total energy = 11433.5841 kcal/mol (11426.4026 without restraints) Performing minimization step: 1462. Total energy = 11428.1057 kcal/mol (11420.9263 without restraints) Performing minimization step: 1463. Total energy = 11422.6332 kcal/mol (11415.4560 without restraints) Performing minimization step: 1464. Total energy = 11417.1669 kcal/mol (11409.9918 without restraints) Performing minimization step: 1465. Total energy = 11411.7065 kcal/mol (11404.5336 without restraints) Performing minimization step: 1466. Total energy = 11406.2522 kcal/mol (11399.0814 without restraints) Performing minimization step: 1467. Total energy = 11400.8038 kcal/mol (11393.6352 without restraints) Performing minimization step: 1468. Total energy = 11395.3615 kcal/mol (11388.1950 without restraints) Performing minimization step: 1469. Total energy = 11389.9252 kcal/mol (11382.7609 without restraints) Performing minimization step: 1470. Total energy = 11384.4948 kcal/mol (11377.3327 without restraints) Performing minimization step: 1471. Total energy = 11379.0703 kcal/mol (11371.9103 without restraints) Performing minimization step: 1472. Total energy = 11373.6514 kcal/mol (11366.4934 without restraints) Performing minimization step: 1473. Total energy = 11368.2385 kcal/mol (11361.0827 without restraints) Performing minimization step: 1474. Total energy = 11362.8316 kcal/mol (11355.6780 without restraints) Performing minimization step: 1475. Total energy = 11357.4308 kcal/mol (11350.2793 without restraints) Performing minimization step: 1476. Total energy = 11352.0361 kcal/mol (11344.8868 without restraints) Performing minimization step: 1477. Total energy = 11346.6473 kcal/mol (11339.5001 without restraints) Performing minimization step: 1478. Total energy = 11341.2641 kcal/mol (11334.1190 without restraints) Performing minimization step: 1479. Total energy = 11335.8867 kcal/mol (11328.7438 without restraints) Performing minimization step: 1480. Total energy = 11330.5153 kcal/mol (11323.3744 without restraints) Performing minimization step: 1481. Total energy = 11325.1498 kcal/mol (11318.0112 without restraints) Performing minimization step: 1482. Total energy = 11319.7899 kcal/mol (11312.6533 without restraints) Performing minimization step: 1483. Total energy = 11314.4363 kcal/mol (11307.3019 without restraints) Performing minimization step: 1484. Total energy = 11309.0884 kcal/mol (11301.9561 without restraints) Performing minimization step: 1485. Total energy = 11303.7464 kcal/mol (11296.6162 without restraints) Performing minimization step: 1486. Total energy = 11298.4102 kcal/mol (11291.2821 without restraints) Performing minimization step: 1487. Total energy = 11293.0795 kcal/mol (11285.9536 without restraints) Performing minimization step: 1488. Total energy = 11287.7547 kcal/mol (11280.6309 without restraints) Performing minimization step: 1489. Total energy = 11282.4359 kcal/mol (11275.3142 without restraints) Performing minimization step: 1490. Total energy = 11277.1229 kcal/mol (11270.0034 without restraints) Performing minimization step: 1491. Total energy = 11271.8159 kcal/mol (11264.6985 without restraints) Performing minimization step: 1492. Total energy = 11266.5145 kcal/mol (11259.3993 without restraints) Performing minimization step: 1493. Total energy = 11261.2189 kcal/mol (11254.1057 without restraints) Performing minimization step: 1494. Total energy = 11255.9287 kcal/mol (11248.8177 without restraints) Performing minimization step: 1495. Total energy = 11250.6445 kcal/mol (11243.5356 without restraints) Performing minimization step: 1496. Total energy = 11245.3659 kcal/mol (11238.2591 without restraints) Performing minimization step: 1497. Total energy = 11240.0928 kcal/mol (11232.9883 without restraints) Performing minimization step: 1498. Total energy = 11234.8257 kcal/mol (11227.7232 without restraints) Performing minimization step: 1499. Total energy = 11229.5643 kcal/mol (11222.4640 without restraints) Performing minimization step: 1500. Total energy = 11224.3086 kcal/mol (11217.2104 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 11219.0588 kcal/mol (11211.9627 without restraints) Performing minimization step: 1502. Total energy = 11213.8146 kcal/mol (11206.7206 without restraints) Performing minimization step: 1503. Total energy = 11208.5760 kcal/mol (11201.4841 without restraints) Performing minimization step: 1504. Total energy = 11203.3431 kcal/mol (11196.2533 without restraints) Performing minimization step: 1505. Total energy = 11198.1161 kcal/mol (11191.0284 without restraints) Performing minimization step: 1506. Total energy = 11192.8947 kcal/mol (11185.8092 without restraints) Performing minimization step: 1507. Total energy = 11187.6790 kcal/mol (11180.5955 without restraints) Performing minimization step: 1508. Total energy = 11182.4686 kcal/mol (11175.3872 without restraints) Performing minimization step: 1509. Total energy = 11177.2637 kcal/mol (11170.1844 without restraints) Performing minimization step: 1510. Total energy = 11172.0648 kcal/mol (11164.9877 without restraints) Performing minimization step: 1511. Total energy = 11166.8712 kcal/mol (11159.7962 without restraints) Performing minimization step: 1512. Total energy = 11161.6839 kcal/mol (11154.6110 without restraints) Performing minimization step: 1513. Total energy = 11156.5018 kcal/mol (11149.4310 without restraints) Performing minimization step: 1514. Total energy = 11151.3253 kcal/mol (11144.2568 without restraints) Performing minimization step: 1515. Total energy = 11146.1545 kcal/mol (11139.0880 without restraints) Performing minimization step: 1516. Total energy = 11140.9892 kcal/mol (11133.9247 without restraints) Performing minimization step: 1517. Total energy = 11135.8294 kcal/mol (11128.7669 without restraints) Performing minimization step: 1518. Total energy = 11130.6751 kcal/mol (11123.6149 without restraints) Performing minimization step: 1519. Total energy = 11125.5268 kcal/mol (11118.4689 without restraints) Performing minimization step: 1520. Total energy = 11120.3837 kcal/mol (11113.3275 without restraints) Performing minimization step: 1521. Total energy = 11115.2461 kcal/mol (11108.1921 without restraints) Performing minimization step: 1522. Total energy = 11110.1139 kcal/mol (11103.0619 without restraints) Performing minimization step: 1523. Total energy = 11104.9875 kcal/mol (11097.9377 without restraints) Performing minimization step: 1524. Total energy = 11099.8667 kcal/mol (11092.8190 without restraints) Performing minimization step: 1525. Total energy = 11094.7518 kcal/mol (11087.7062 without restraints) Performing minimization step: 1526. Total energy = 11089.6418 kcal/mol (11082.5984 without restraints) Performing minimization step: 1527. Total energy = 11084.5375 kcal/mol (11077.4961 without restraints) Performing minimization step: 1528. Total energy = 11079.4387 kcal/mol (11072.3994 without restraints) Performing minimization step: 1529. Total energy = 11074.3454 kcal/mol (11067.3080 without restraints) Performing minimization step: 1530. Total energy = 11069.2574 kcal/mol (11062.2224 without restraints) Performing minimization step: 1531. Total energy = 11064.1756 kcal/mol (11057.1426 without restraints) Performing minimization step: 1532. Total energy = 11059.0988 kcal/mol (11052.0679 without restraints) Performing minimization step: 1533. Total energy = 11054.0277 kcal/mol (11046.9991 without restraints) Performing minimization step: 1534. Total energy = 11048.9621 kcal/mol (11041.9352 without restraints) Performing minimization step: 1535. Total energy = 11043.9016 kcal/mol (11036.8771 without restraints) Performing minimization step: 1536. Total energy = 11038.8468 kcal/mol (11031.8242 without restraints) Performing minimization step: 1537. Total energy = 11033.7972 kcal/mol (11026.7768 without restraints) Performing minimization step: 1538. Total energy = 11028.7530 kcal/mol (11021.7347 without restraints) Performing minimization step: 1539. Total energy = 11023.7138 kcal/mol (11016.6975 without restraints) Performing minimization step: 1540. Total energy = 11018.6806 kcal/mol (11011.6665 without restraints) Performing minimization step: 1541. Total energy = 11013.6532 kcal/mol (11006.6411 without restraints) Performing minimization step: 1542. Total energy = 11008.6310 kcal/mol (11001.6211 without restraints) Performing minimization step: 1543. Total energy = 11003.6141 kcal/mol (10996.6061 without restraints) Performing minimization step: 1544. Total energy = 10998.6026 kcal/mol (10991.5970 without restraints) Performing minimization step: 1545. Total energy = 10993.5971 kcal/mol (10986.5934 without restraints) Performing minimization step: 1546. Total energy = 10988.5961 kcal/mol (10981.5945 without restraints) Performing minimization step: 1547. Total energy = 10983.6007 kcal/mol (10976.6011 without restraints) Performing minimization step: 1548. Total energy = 10978.6105 kcal/mol (10971.6130 without restraints) Performing minimization step: 1549. Total energy = 10973.6257 kcal/mol (10966.6303 without restraints) Performing minimization step: 1550. Total energy = 10968.6464 kcal/mol (10961.6531 without restraints) Performing minimization step: 1551. Total energy = 10963.6723 kcal/mol (10956.6810 without restraints) Performing minimization step: 1552. Total energy = 10958.7036 kcal/mol (10951.7144 without restraints) Performing minimization step: 1553. Total energy = 10953.7401 kcal/mol (10946.7529 without restraints) Performing minimization step: 1554. Total energy = 10948.7817 kcal/mol (10941.7967 without restraints) Performing minimization step: 1555. Total energy = 10943.8296 kcal/mol (10936.8467 without restraints) Performing minimization step: 1556. Total energy = 10938.8823 kcal/mol (10931.9015 without restraints) Performing minimization step: 1557. Total energy = 10933.9404 kcal/mol (10926.9616 without restraints) Performing minimization step: 1558. Total energy = 10929.0039 kcal/mol (10922.0272 without restraints) Performing minimization step: 1559. Total energy = 10924.0725 kcal/mol (10917.0979 without restraints) Performing minimization step: 1560. Total energy = 10919.1460 kcal/mol (10912.1735 without restraints) Performing minimization step: 1561. Total energy = 10914.2251 kcal/mol (10907.2546 without restraints) Performing minimization step: 1562. Total energy = 10909.3092 kcal/mol (10902.3408 without restraints) Performing minimization step: 1563. Total energy = 10904.3988 kcal/mol (10897.4325 without restraints) Performing minimization step: 1564. Total energy = 10899.4935 kcal/mol (10892.5293 without restraints) Performing minimization step: 1565. Total energy = 10894.5935 kcal/mol (10887.6314 without restraints) Performing minimization step: 1566. Total energy = 10889.6985 kcal/mol (10882.7384 without restraints) Performing minimization step: 1567. Total energy = 10884.8093 kcal/mol (10877.8513 without restraints) Performing minimization step: 1568. Total energy = 10879.9249 kcal/mol (10872.9690 without restraints) Performing minimization step: 1569. Total energy = 10875.0459 kcal/mol (10868.0920 without restraints) Performing minimization step: 1570. Total energy = 10870.1721 kcal/mol (10863.2203 without restraints) Performing minimization step: 1571. Total energy = 10865.3032 kcal/mol (10858.3533 without restraints) Performing minimization step: 1572. Total energy = 10860.4394 kcal/mol (10853.4919 without restraints) Performing minimization step: 1573. Total energy = 10855.5815 kcal/mol (10848.6358 without restraints) Performing minimization step: 1574. Total energy = 10850.7283 kcal/mol (10843.7847 without restraints) Performing minimization step: 1575. Total energy = 10845.8799 kcal/mol (10838.9384 without restraints) Performing minimization step: 1576. Total energy = 10841.0369 kcal/mol (10834.0976 without restraints) Performing minimization step: 1577. Total energy = 10836.1991 kcal/mol (10829.2616 without restraints) Performing minimization step: 1578. Total energy = 10831.3663 kcal/mol (10824.4308 without restraints) Performing minimization step: 1579. Total energy = 10826.5385 kcal/mol (10819.6049 without restraints) Performing minimization step: 1580. Total energy = 10821.7162 kcal/mol (10814.7850 without restraints) Performing minimization step: 1581. Total energy = 10816.8987 kcal/mol (10809.9694 without restraints) Performing minimization step: 1582. Total energy = 10812.0866 kcal/mol (10805.1596 without restraints) Performing minimization step: 1583. Total energy = 10807.2796 kcal/mol (10800.3545 without restraints) Performing minimization step: 1584. Total energy = 10802.4775 kcal/mol (10795.5545 without restraints) Performing minimization step: 1585. Total energy = 10797.6809 kcal/mol (10790.7599 without restraints) Performing minimization step: 1586. Total energy = 10792.8890 kcal/mol (10785.9701 without restraints) Performing minimization step: 1587. Total energy = 10788.1026 kcal/mol (10781.1858 without restraints) Performing minimization step: 1588. Total energy = 10783.3213 kcal/mol (10776.4065 without restraints) Performing minimization step: 1589. Total energy = 10778.5444 kcal/mol (10771.6316 without restraints) Performing minimization step: 1590. Total energy = 10773.7735 kcal/mol (10766.8628 without restraints) Performing minimization step: 1591. Total energy = 10769.0071 kcal/mol (10762.0984 without restraints) Performing minimization step: 1592. Total energy = 10764.2459 kcal/mol (10757.3395 without restraints) Performing minimization step: 1593. Total energy = 10759.4898 kcal/mol (10752.5852 without restraints) Performing minimization step: 1594. Total energy = 10754.7384 kcal/mol (10747.8360 without restraints) Performing minimization step: 1595. Total energy = 10749.9923 kcal/mol (10743.0918 without restraints) Performing minimization step: 1596. Total energy = 10745.2515 kcal/mol (10738.3530 without restraints) Performing minimization step: 1597. Total energy = 10740.5152 kcal/mol (10733.6187 without restraints) Performing minimization step: 1598. Total energy = 10735.7839 kcal/mol (10728.8895 without restraints) Performing minimization step: 1599. Total energy = 10731.0574 kcal/mol (10724.1651 without restraints) Performing minimization step: 1600. Total energy = 10726.3358 kcal/mol (10719.4454 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 10721.6194 kcal/mol (10714.7313 without restraints) Performing minimization step: 1602. Total energy = 10716.9082 kcal/mol (10710.0220 without restraints) Performing minimization step: 1603. Total energy = 10712.2018 kcal/mol (10705.3176 without restraints) Performing minimization step: 1604. Total energy = 10707.5002 kcal/mol (10700.6181 without restraints) Performing minimization step: 1605. Total energy = 10702.8043 kcal/mol (10695.9242 without restraints) Performing minimization step: 1606. Total energy = 10698.1130 kcal/mol (10691.2349 without restraints) Performing minimization step: 1607. Total energy = 10693.4264 kcal/mol (10686.5504 without restraints) Performing minimization step: 1608. Total energy = 10688.7445 kcal/mol (10681.8705 without restraints) Performing minimization step: 1609. Total energy = 10684.0680 kcal/mol (10677.1960 without restraints) Performing minimization step: 1610. Total energy = 10679.3961 kcal/mol (10672.5262 without restraints) Performing minimization step: 1611. Total energy = 10674.7291 kcal/mol (10667.8612 without restraints) Performing minimization step: 1612. Total energy = 10670.0674 kcal/mol (10663.2017 without restraints) Performing minimization step: 1613. Total energy = 10665.4107 kcal/mol (10658.5469 without restraints) Performing minimization step: 1614. Total energy = 10660.7585 kcal/mol (10653.8967 without restraints) Performing minimization step: 1615. Total energy = 10656.1111 kcal/mol (10649.2513 without restraints) Performing minimization step: 1616. Total energy = 10651.4687 kcal/mol (10644.6109 without restraints) Performing minimization step: 1617. Total energy = 10646.8309 kcal/mol (10639.9750 without restraints) Performing minimization step: 1618. Total energy = 10642.1980 kcal/mol (10635.3444 without restraints) Performing minimization step: 1619. Total energy = 10637.5699 kcal/mol (10630.7183 without restraints) Performing minimization step: 1620. Total energy = 10632.9467 kcal/mol (10626.0971 without restraints) Performing minimization step: 1621. Total energy = 10628.3286 kcal/mol (10621.4809 without restraints) Performing minimization step: 1622. Total energy = 10623.7147 kcal/mol (10616.8691 without restraints) Performing minimization step: 1623. Total energy = 10619.1062 kcal/mol (10612.2624 without restraints) Performing minimization step: 1624. Total energy = 10614.5022 kcal/mol (10607.6606 without restraints) Performing minimization step: 1625. Total energy = 10609.9031 kcal/mol (10603.0636 without restraints) Performing minimization step: 1626. Total energy = 10605.3088 kcal/mol (10598.4711 without restraints) Performing minimization step: 1627. Total energy = 10600.7192 kcal/mol (10593.8836 without restraints) Performing minimization step: 1628. Total energy = 10596.1344 kcal/mol (10589.3009 without restraints) Performing minimization step: 1629. Total energy = 10591.5545 kcal/mol (10584.7229 without restraints) Performing minimization step: 1630. Total energy = 10586.9792 kcal/mol (10580.1498 without restraints) Performing minimization step: 1631. Total energy = 10582.4089 kcal/mol (10575.5815 without restraints) Performing minimization step: 1632. Total energy = 10577.8431 kcal/mol (10571.0177 without restraints) Performing minimization step: 1633. Total energy = 10573.2822 kcal/mol (10566.4587 without restraints) Performing minimization step: 1634. Total energy = 10568.7259 kcal/mol (10561.9045 without restraints) Performing minimization step: 1635. Total energy = 10564.1742 kcal/mol (10557.3548 without restraints) Performing minimization step: 1636. Total energy = 10559.6274 kcal/mol (10552.8100 without restraints) Performing minimization step: 1637. Total energy = 10555.0854 kcal/mol (10548.2701 without restraints) Performing minimization step: 1638. Total energy = 10550.5486 kcal/mol (10543.7354 without restraints) Performing minimization step: 1639. Total energy = 10546.0161 kcal/mol (10539.2047 without restraints) Performing minimization step: 1640. Total energy = 10541.4879 kcal/mol (10534.6785 without restraints) Performing minimization step: 1641. Total energy = 10536.9646 kcal/mol (10530.1572 without restraints) Performing minimization step: 1642. Total energy = 10532.4457 kcal/mol (10525.6404 without restraints) Performing minimization step: 1643. Total energy = 10527.9321 kcal/mol (10521.1287 without restraints) Performing minimization step: 1644. Total energy = 10523.4228 kcal/mol (10516.6214 without restraints) Performing minimization step: 1645. Total energy = 10518.9188 kcal/mol (10512.1194 without restraints) Performing minimization step: 1646. Total energy = 10514.4188 kcal/mol (10507.6215 without restraints) Performing minimization step: 1647. Total energy = 10509.9238 kcal/mol (10503.1284 without restraints) Performing minimization step: 1648. Total energy = 10505.4331 kcal/mol (10498.6398 without restraints) Performing minimization step: 1649. Total energy = 10500.9470 kcal/mol (10494.1556 without restraints) Performing minimization step: 1650. Total energy = 10496.4655 kcal/mol (10489.6762 without restraints) Performing minimization step: 1651. Total energy = 10491.9890 kcal/mol (10485.2020 without restraints) Performing minimization step: 1652. Total energy = 10487.5170 kcal/mol (10480.7315 without restraints) Performing minimization step: 1653. Total energy = 10483.0493 kcal/mol (10476.2660 without restraints) Performing minimization step: 1654. Total energy = 10478.5862 kcal/mol (10471.8047 without restraints) Performing minimization step: 1655. Total energy = 10474.1277 kcal/mol (10467.3483 without restraints) Performing minimization step: 1656. Total energy = 10469.6740 kcal/mol (10462.8965 without restraints) Performing minimization step: 1657. Total energy = 10465.2247 kcal/mol (10458.4493 without restraints) Performing minimization step: 1658. Total energy = 10460.7799 kcal/mol (10454.0066 without restraints) Performing minimization step: 1659. Total energy = 10456.3399 kcal/mol (10449.5685 without restraints) Performing minimization step: 1660. Total energy = 10451.9040 kcal/mol (10445.1345 without restraints) Performing minimization step: 1661. Total energy = 10447.4729 kcal/mol (10440.7055 without restraints) Performing minimization step: 1662. Total energy = 10443.0464 kcal/mol (10436.2810 without restraints) Performing minimization step: 1663. Total energy = 10438.6243 kcal/mol (10431.8608 without restraints) Performing minimization step: 1664. Total energy = 10434.2064 kcal/mol (10427.4449 without restraints) Performing minimization step: 1665. Total energy = 10429.7930 kcal/mol (10423.0334 without restraints) Performing minimization step: 1666. Total energy = 10425.3840 kcal/mol (10418.6265 without restraints) Performing minimization step: 1667. Total energy = 10420.9797 kcal/mol (10414.2242 without restraints) Performing minimization step: 1668. Total energy = 10416.5799 kcal/mol (10409.8264 without restraints) Performing minimization step: 1669. Total energy = 10412.1844 kcal/mol (10405.4328 without restraints) Performing minimization step: 1670. Total energy = 10407.7938 kcal/mol (10401.0442 without restraints) Performing minimization step: 1671. Total energy = 10403.4080 kcal/mol (10396.6603 without restraints) Performing minimization step: 1672. Total energy = 10399.0262 kcal/mol (10392.2805 without restraints) Performing minimization step: 1673. Total energy = 10394.6490 kcal/mol (10387.9053 without restraints) Performing minimization step: 1674. Total energy = 10390.2762 kcal/mol (10383.5345 without restraints) Performing minimization step: 1675. Total energy = 10385.9074 kcal/mol (10379.1676 without restraints) Performing minimization step: 1676. Total energy = 10381.5434 kcal/mol (10374.8057 without restraints) Performing minimization step: 1677. Total energy = 10377.1837 kcal/mol (10370.4479 without restraints) Performing minimization step: 1678. Total energy = 10372.8286 kcal/mol (10366.0948 without restraints) Performing minimization step: 1679. Total energy = 10368.4778 kcal/mol (10361.7460 without restraints) Performing minimization step: 1680. Total energy = 10364.1312 kcal/mol (10357.4013 without restraints) Performing minimization step: 1681. Total energy = 10359.7895 kcal/mol (10353.0616 without restraints) Performing minimization step: 1682. Total energy = 10355.4517 kcal/mol (10348.7256 without restraints) Performing minimization step: 1683. Total energy = 10351.1181 kcal/mol (10344.3941 without restraints) Performing minimization step: 1684. Total energy = 10346.7892 kcal/mol (10340.0671 without restraints) Performing minimization step: 1685. Total energy = 10342.4646 kcal/mol (10335.7446 without restraints) Performing minimization step: 1686. Total energy = 10338.1447 kcal/mol (10331.4266 without restraints) Performing minimization step: 1687. Total energy = 10333.8288 kcal/mol (10327.1126 without restraints) Performing minimization step: 1688. Total energy = 10329.5173 kcal/mol (10322.8030 without restraints) Performing minimization step: 1689. Total energy = 10325.2100 kcal/mol (10318.4977 without restraints) Performing minimization step: 1690. Total energy = 10320.9071 kcal/mol (10314.1968 without restraints) Performing minimization step: 1691. Total energy = 10316.6080 kcal/mol (10309.8996 without restraints) Performing minimization step: 1692. Total energy = 10312.3135 kcal/mol (10305.6072 without restraints) Performing minimization step: 1693. Total energy = 10308.0234 kcal/mol (10301.3190 without restraints) Performing minimization step: 1694. Total energy = 10303.7376 kcal/mol (10297.0351 without restraints) Performing minimization step: 1695. Total energy = 10299.4562 kcal/mol (10292.7557 without restraints) Performing minimization step: 1696. Total energy = 10295.1790 kcal/mol (10288.4805 without restraints) Performing minimization step: 1697. Total energy = 10290.9062 kcal/mol (10284.2096 without restraints) Performing minimization step: 1698. Total energy = 10286.6375 kcal/mol (10279.9428 without restraints) Performing minimization step: 1699. Total energy = 10282.3730 kcal/mol (10275.6803 without restraints) Performing minimization step: 1700. Total energy = 10278.1134 kcal/mol (10271.4227 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 10273.8576 kcal/mol (10267.1689 without restraints) Performing minimization step: 1702. Total energy = 10269.6059 kcal/mol (10262.9191 without restraints) Performing minimization step: 1703. Total energy = 10265.3585 kcal/mol (10258.6734 without restraints) Performing minimization step: 1704. Total energy = 10261.1150 kcal/mol (10254.4320 without restraints) Performing minimization step: 1705. Total energy = 10256.8758 kcal/mol (10250.1948 without restraints) Performing minimization step: 1706. Total energy = 10252.6411 kcal/mol (10245.9620 without restraints) Performing minimization step: 1707. Total energy = 10248.4106 kcal/mol (10241.7337 without restraints) Performing minimization step: 1708. Total energy = 10244.1845 kcal/mol (10237.5093 without restraints) Performing minimization step: 1709. Total energy = 10239.9621 kcal/mol (10233.2888 without restraints) Performing minimization step: 1710. Total energy = 10235.7438 kcal/mol (10229.0725 without restraints) Performing minimization step: 1711. Total energy = 10231.5299 kcal/mol (10224.8606 without restraints) Performing minimization step: 1712. Total energy = 10227.3203 kcal/mol (10220.6530 without restraints) Performing minimization step: 1713. Total energy = 10223.1155 kcal/mol (10216.4500 without restraints) Performing minimization step: 1714. Total energy = 10218.9142 kcal/mol (10212.2507 without restraints) Performing minimization step: 1715. Total energy = 10214.7165 kcal/mol (10208.0548 without restraints) Performing minimization step: 1716. Total energy = 10210.5234 kcal/mol (10203.8637 without restraints) Performing minimization step: 1717. Total energy = 10206.3344 kcal/mol (10199.6767 without restraints) Performing minimization step: 1718. Total energy = 10202.1498 kcal/mol (10195.4939 without restraints) Performing minimization step: 1719. Total energy = 10197.9687 kcal/mol (10191.3148 without restraints) Performing minimization step: 1720. Total energy = 10193.7919 kcal/mol (10187.1399 without restraints) Performing minimization step: 1721. Total energy = 10189.6192 kcal/mol (10182.9691 without restraints) Performing minimization step: 1722. Total energy = 10185.4507 kcal/mol (10178.8025 without restraints) Performing minimization step: 1723. Total energy = 10181.2861 kcal/mol (10174.6398 without restraints) Performing minimization step: 1724. Total energy = 10177.1254 kcal/mol (10170.4811 without restraints) Performing minimization step: 1725. Total energy = 10172.9696 kcal/mol (10166.3272 without restraints) Performing minimization step: 1726. Total energy = 10168.8175 kcal/mol (10162.1770 without restraints) Performing minimization step: 1727. Total energy = 10164.6695 kcal/mol (10158.0310 without restraints) Performing minimization step: 1728. Total energy = 10160.5245 kcal/mol (10153.8879 without restraints) Performing minimization step: 1729. Total energy = 10156.3841 kcal/mol (10149.7495 without restraints) Performing minimization step: 1730. Total energy = 10152.2480 kcal/mol (10145.6153 without restraints) Performing minimization step: 1731. Total energy = 10148.1159 kcal/mol (10141.4850 without restraints) Performing minimization step: 1732. Total energy = 10143.9878 kcal/mol (10137.3590 without restraints) Performing minimization step: 1733. Total energy = 10139.8637 kcal/mol (10133.2367 without restraints) Performing minimization step: 1734. Total energy = 10135.7430 kcal/mol (10129.1179 without restraints) Performing minimization step: 1735. Total energy = 10131.6265 kcal/mol (10125.0033 without restraints) Performing minimization step: 1736. Total energy = 10127.5141 kcal/mol (10120.8928 without restraints) Performing minimization step: 1737. Total energy = 10123.4056 kcal/mol (10116.7863 without restraints) Performing minimization step: 1738. Total energy = 10119.3009 kcal/mol (10112.6833 without restraints) Performing minimization step: 1739. Total energy = 10115.2006 kcal/mol (10108.5851 without restraints) Performing minimization step: 1740. Total energy = 10111.1040 kcal/mol (10104.4903 without restraints) Performing minimization step: 1741. Total energy = 10107.0114 kcal/mol (10100.3996 without restraints) Performing minimization step: 1742. Total energy = 10102.9222 kcal/mol (10096.3123 without restraints) Performing minimization step: 1743. Total energy = 10098.8374 kcal/mol (10092.2295 without restraints) Performing minimization step: 1744. Total energy = 10094.7569 kcal/mol (10088.1508 without restraints) Performing minimization step: 1745. Total energy = 10090.6798 kcal/mol (10084.0757 without restraints) Performing minimization step: 1746. Total energy = 10086.6069 kcal/mol (10080.0047 without restraints) Performing minimization step: 1747. Total energy = 10082.5374 kcal/mol (10075.9370 without restraints) Performing minimization step: 1748. Total energy = 10078.4722 kcal/mol (10071.8737 without restraints) Performing minimization step: 1749. Total energy = 10074.4107 kcal/mol (10067.8141 without restraints) Performing minimization step: 1750. Total energy = 10070.3533 kcal/mol (10063.7588 without restraints) Performing minimization step: 1751. Total energy = 10066.2999 kcal/mol (10059.7072 without restraints) Performing minimization step: 1752. Total energy = 10062.2495 kcal/mol (10055.6586 without restraints) Performing minimization step: 1753. Total energy = 10058.2036 kcal/mol (10051.6147 without restraints) Performing minimization step: 1754. Total energy = 10054.1614 kcal/mol (10047.5744 without restraints) Performing minimization step: 1755. Total energy = 10050.1231 kcal/mol (10043.5379 without restraints) Performing minimization step: 1756. Total energy = 10046.0887 kcal/mol (10039.5054 without restraints) Performing minimization step: 1757. Total energy = 10042.0584 kcal/mol (10035.4771 without restraints) Performing minimization step: 1758. Total energy = 10038.0316 kcal/mol (10031.4521 without restraints) Performing minimization step: 1759. Total energy = 10034.0089 kcal/mol (10027.4313 without restraints) Performing minimization step: 1760. Total energy = 10029.9896 kcal/mol (10023.4139 without restraints) Performing minimization step: 1761. Total energy = 10025.9740 kcal/mol (10019.4001 without restraints) Performing minimization step: 1762. Total energy = 10021.9622 kcal/mol (10015.3902 without restraints) Performing minimization step: 1763. Total energy = 10017.9544 kcal/mol (10011.3844 without restraints) Performing minimization step: 1764. Total energy = 10013.9505 kcal/mol (10007.3823 without restraints) Performing minimization step: 1765. Total energy = 10009.9501 kcal/mol (10003.3838 without restraints) Performing minimization step: 1766. Total energy = 10005.9532 kcal/mol (9999.3888 without restraints) Performing minimization step: 1767. Total energy = 10001.9606 kcal/mol (9995.3981 without restraints) Performing minimization step: 1768. Total energy = 9997.9717 kcal/mol (9991.4110 without restraints) Performing minimization step: 1769. Total energy = 9993.9863 kcal/mol (9987.4275 without restraints) Performing minimization step: 1770. Total energy = 9990.0047 kcal/mol (9983.4476 without restraints) Performing minimization step: 1771. Total energy = 9986.0266 kcal/mol (9979.4716 without restraints) Performing minimization step: 1772. Total energy = 9982.0523 kcal/mol (9975.4991 without restraints) Performing minimization step: 1773. Total energy = 9978.0819 kcal/mol (9971.5306 without restraints) Performing minimization step: 1774. Total energy = 9974.1153 kcal/mol (9967.5659 without restraints) Performing minimization step: 1775. Total energy = 9970.1526 kcal/mol (9963.6050 without restraints) Performing minimization step: 1776. Total energy = 9966.1931 kcal/mol (9959.6474 without restraints) Performing minimization step: 1777. Total energy = 9962.2372 kcal/mol (9955.6933 without restraints) Performing minimization step: 1778. Total energy = 9958.2854 kcal/mol (9951.7434 without restraints) Performing minimization step: 1779. Total energy = 9954.3369 kcal/mol (9947.7968 without restraints) Performing minimization step: 1780. Total energy = 9950.3931 kcal/mol (9943.8548 without restraints) Performing minimization step: 1781. Total energy = 9946.4517 kcal/mol (9939.9154 without restraints) Performing minimization step: 1782. Total energy = 9942.5147 kcal/mol (9935.9801 without restraints) Performing minimization step: 1783. Total energy = 9938.5810 kcal/mol (9932.0483 without restraints) Performing minimization step: 1784. Total energy = 9934.6507 kcal/mol (9928.1199 without restraints) Performing minimization step: 1785. Total energy = 9930.7238 kcal/mol (9924.1950 without restraints) Performing minimization step: 1786. Total energy = 9926.8011 kcal/mol (9920.2740 without restraints) Performing minimization step: 1787. Total energy = 9922.8817 kcal/mol (9916.3564 without restraints) Performing minimization step: 1788. Total energy = 9918.9667 kcal/mol (9912.4432 without restraints) Performing minimization step: 1789. Total energy = 9915.0543 kcal/mol (9908.5328 without restraints) Performing minimization step: 1790. Total energy = 9911.1457 kcal/mol (9904.6260 without restraints) Performing minimization step: 1791. Total energy = 9907.2405 kcal/mol (9900.7227 without restraints) Performing minimization step: 1792. Total energy = 9903.3391 kcal/mol (9896.8232 without restraints) Performing minimization step: 1793. Total energy = 9899.4411 kcal/mol (9892.9270 without restraints) Performing minimization step: 1794. Total energy = 9895.5465 kcal/mol (9889.0342 without restraints) Performing minimization step: 1795. Total energy = 9891.6555 kcal/mol (9885.1452 without restraints) Performing minimization step: 1796. Total energy = 9887.7684 kcal/mol (9881.2598 without restraints) Performing minimization step: 1797. Total energy = 9883.8846 kcal/mol (9877.3778 without restraints) Performing minimization step: 1798. Total energy = 9880.0045 kcal/mol (9873.4997 without restraints) Performing minimization step: 1799. Total energy = 9876.1283 kcal/mol (9869.6252 without restraints) Performing minimization step: 1800. Total energy = 9872.2553 kcal/mol (9865.7541 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 9868.3856 kcal/mol (9861.8863 without restraints) Performing minimization step: 1802. Total energy = 9864.5197 kcal/mol (9858.0223 without restraints) Performing minimization step: 1803. Total energy = 9860.6569 kcal/mol (9854.1612 without restraints) Performing minimization step: 1804. Total energy = 9856.7976 kcal/mol (9850.3038 without restraints) Performing minimization step: 1805. Total energy = 9852.9418 kcal/mol (9846.4496 without restraints) Performing minimization step: 1806. Total energy = 9849.0896 kcal/mol (9842.5994 without restraints) Performing minimization step: 1807. Total energy = 9845.2413 kcal/mol (9838.7530 without restraints) Performing minimization step: 1808. Total energy = 9841.3962 kcal/mol (9834.9096 without restraints) Performing minimization step: 1809. Total energy = 9837.5541 kcal/mol (9831.0693 without restraints) Performing minimization step: 1810. Total energy = 9833.7160 kcal/mol (9827.2331 without restraints) Performing minimization step: 1811. Total energy = 9829.8811 kcal/mol (9823.4001 without restraints) Performing minimization step: 1812. Total energy = 9826.0497 kcal/mol (9819.5705 without restraints) Performing minimization step: 1813. Total energy = 9822.2215 kcal/mol (9815.7441 without restraints) Performing minimization step: 1814. Total energy = 9818.3967 kcal/mol (9811.9212 without restraints) Performing minimization step: 1815. Total energy = 9814.5755 kcal/mol (9808.1019 without restraints) Performing minimization step: 1816. Total energy = 9810.7577 kcal/mol (9804.2857 without restraints) Performing minimization step: 1817. Total energy = 9806.9426 kcal/mol (9800.4724 without restraints) Performing minimization step: 1818. Total energy = 9803.1318 kcal/mol (9796.6637 without restraints) Performing minimization step: 1819. Total energy = 9799.3244 kcal/mol (9792.8580 without restraints) Performing minimization step: 1820. Total energy = 9795.5196 kcal/mol (9789.0549 without restraints) Performing minimization step: 1821. Total energy = 9791.7187 kcal/mol (9785.2559 without restraints) Performing minimization step: 1822. Total energy = 9787.9207 kcal/mol (9781.4597 without restraints) Performing minimization step: 1823. Total energy = 9784.1266 kcal/mol (9777.6675 without restraints) Performing minimization step: 1824. Total energy = 9780.3356 kcal/mol (9773.8782 without restraints) Performing minimization step: 1825. Total energy = 9776.5478 kcal/mol (9770.0923 without restraints) Performing minimization step: 1826. Total energy = 9772.7637 kcal/mol (9766.3099 without restraints) Performing minimization step: 1827. Total energy = 9768.9825 kcal/mol (9762.5304 without restraints) Performing minimization step: 1828. Total energy = 9765.2044 kcal/mol (9758.7543 without restraints) Performing minimization step: 1829. Total energy = 9761.4300 kcal/mol (9754.9817 without restraints) Performing minimization step: 1830. Total energy = 9757.6589 kcal/mol (9751.2124 without restraints) Performing minimization step: 1831. Total energy = 9753.8915 kcal/mol (9747.4468 without restraints) Performing minimization step: 1832. Total energy = 9750.1271 kcal/mol (9743.6843 without restraints) Performing minimization step: 1833. Total energy = 9746.3661 kcal/mol (9739.9250 without restraints) Performing minimization step: 1834. Total energy = 9742.6080 kcal/mol (9736.1688 without restraints) Performing minimization step: 1835. Total energy = 9738.8534 kcal/mol (9732.4159 without restraints) Performing minimization step: 1836. Total energy = 9735.1020 kcal/mol (9728.6663 without restraints) Performing minimization step: 1837. Total energy = 9731.3534 kcal/mol (9724.9195 without restraints) Performing minimization step: 1838. Total energy = 9727.6087 kcal/mol (9721.1766 without restraints) Performing minimization step: 1839. Total energy = 9723.8672 kcal/mol (9717.4369 without restraints) Performing minimization step: 1840. Total energy = 9720.1287 kcal/mol (9713.7002 without restraints) Performing minimization step: 1841. Total energy = 9716.3934 kcal/mol (9709.9667 without restraints) Performing minimization step: 1842. Total energy = 9712.6615 kcal/mol (9706.2365 without restraints) Performing minimization step: 1843. Total energy = 9708.9324 kcal/mol (9702.5093 without restraints) Performing minimization step: 1844. Total energy = 9705.2070 kcal/mol (9698.7857 without restraints) Performing minimization step: 1845. Total energy = 9701.4849 kcal/mol (9695.0655 without restraints) Performing minimization step: 1846. Total energy = 9697.7658 kcal/mol (9691.3481 without restraints) Performing minimization step: 1847. Total energy = 9694.0504 kcal/mol (9687.6346 without restraints) Performing minimization step: 1848. Total energy = 9690.3378 kcal/mol (9683.9236 without restraints) Performing minimization step: 1849. Total energy = 9686.6283 kcal/mol (9680.2159 without restraints) Performing minimization step: 1850. Total energy = 9682.9223 kcal/mol (9676.5117 without restraints) Performing minimization step: 1851. Total energy = 9679.2189 kcal/mol (9672.8100 without restraints) Performing minimization step: 1852. Total energy = 9675.5187 kcal/mol (9669.1118 without restraints) Performing minimization step: 1853. Total energy = 9671.8221 kcal/mol (9665.4168 without restraints) Performing minimization step: 1854. Total energy = 9668.1283 kcal/mol (9661.7248 without restraints) Performing minimization step: 1855. Total energy = 9664.4375 kcal/mol (9658.0358 without restraints) Performing minimization step: 1856. Total energy = 9660.7499 kcal/mol (9654.3499 without restraints) Performing minimization step: 1857. Total energy = 9657.0653 kcal/mol (9650.6672 without restraints) Performing minimization step: 1858. Total energy = 9653.3841 kcal/mol (9646.9877 without restraints) Performing minimization step: 1859. Total energy = 9649.7058 kcal/mol (9643.3112 without restraints) Performing minimization step: 1860. Total energy = 9646.0307 kcal/mol (9639.6380 without restraints) Performing minimization step: 1861. Total energy = 9642.3587 kcal/mol (9635.9676 without restraints) Performing minimization step: 1862. Total energy = 9638.6894 kcal/mol (9632.3001 without restraints) Performing minimization step: 1863. Total energy = 9635.0235 kcal/mol (9628.6359 without restraints) Performing minimization step: 1864. Total energy = 9631.3606 kcal/mol (9624.9748 without restraints) Performing minimization step: 1865. Total energy = 9627.7005 kcal/mol (9621.3165 without restraints) Performing minimization step: 1866. Total energy = 9624.0437 kcal/mol (9617.6614 without restraints) Performing minimization step: 1867. Total energy = 9620.3900 kcal/mol (9614.0095 without restraints) Performing minimization step: 1868. Total energy = 9616.7398 kcal/mol (9610.3611 without restraints) Performing minimization step: 1869. Total energy = 9613.0925 kcal/mol (9606.7156 without restraints) Performing minimization step: 1870. Total energy = 9609.4482 kcal/mol (9603.0730 without restraints) Performing minimization step: 1871. Total energy = 9605.8066 kcal/mol (9599.4332 without restraints) Performing minimization step: 1872. Total energy = 9602.1681 kcal/mol (9595.7964 without restraints) Performing minimization step: 1873. Total energy = 9598.5322 kcal/mol (9592.1623 without restraints) Performing minimization step: 1874. Total energy = 9594.9000 kcal/mol (9588.5318 without restraints) Performing minimization step: 1875. Total energy = 9591.2705 kcal/mol (9584.9041 without restraints) Performing minimization step: 1876. Total energy = 9587.6443 kcal/mol (9581.2796 without restraints) Performing minimization step: 1877. Total energy = 9584.0208 kcal/mol (9577.6578 without restraints) Performing minimization step: 1878. Total energy = 9580.4002 kcal/mol (9574.0390 without restraints) Performing minimization step: 1879. Total energy = 9576.7826 kcal/mol (9570.4231 without restraints) Performing minimization step: 1880. Total energy = 9573.1679 kcal/mol (9566.8102 without restraints) Performing minimization step: 1881. Total energy = 9569.5567 kcal/mol (9563.2008 without restraints) Performing minimization step: 1882. Total energy = 9565.9485 kcal/mol (9559.5944 without restraints) Performing minimization step: 1883. Total energy = 9562.3430 kcal/mol (9555.9907 without restraints) Performing minimization step: 1884. Total energy = 9558.7406 kcal/mol (9552.3898 without restraints) Performing minimization step: 1885. Total energy = 9555.1406 kcal/mol (9548.7916 without restraints) Performing minimization step: 1886. Total energy = 9551.5437 kcal/mol (9545.1964 without restraints) Performing minimization step: 1887. Total energy = 9547.9494 kcal/mol (9541.6039 without restraints) Performing minimization step: 1888. Total energy = 9544.3585 kcal/mol (9538.0147 without restraints) Performing minimization step: 1889. Total energy = 9540.7702 kcal/mol (9534.4282 without restraints) Performing minimization step: 1890. Total energy = 9537.1849 kcal/mol (9530.8446 without restraints) Performing minimization step: 1891. Total energy = 9533.6025 kcal/mol (9527.2639 without restraints) Performing minimization step: 1892. Total energy = 9530.0233 kcal/mol (9523.6865 without restraints) Performing minimization step: 1893. Total energy = 9526.4467 kcal/mol (9520.1116 without restraints) Performing minimization step: 1894. Total energy = 9522.8731 kcal/mol (9516.5399 without restraints) Performing minimization step: 1895. Total energy = 9519.3025 kcal/mol (9512.9708 without restraints) Performing minimization step: 1896. Total energy = 9515.7344 kcal/mol (9509.4045 without restraints) Performing minimization step: 1897. Total energy = 9512.1692 kcal/mol (9505.8411 without restraints) Performing minimization step: 1898. Total energy = 9508.6069 kcal/mol (9502.2805 without restraints) Performing minimization step: 1899. Total energy = 9505.0474 kcal/mol (9498.7227 without restraints) Performing minimization step: 1900. Total energy = 9501.4907 kcal/mol (9495.1677 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 9497.9369 kcal/mol (9491.6156 without restraints) Performing minimization step: 1902. Total energy = 9494.3863 kcal/mol (9488.0668 without restraints) Performing minimization step: 1903. Total energy = 9490.8381 kcal/mol (9484.5203 without restraints) Performing minimization step: 1904. Total energy = 9487.2929 kcal/mol (9480.9768 without restraints) Performing minimization step: 1905. Total energy = 9483.7505 kcal/mol (9477.4361 without restraints) Performing minimization step: 1906. Total energy = 9480.2105 kcal/mol (9473.8978 without restraints) Performing minimization step: 1907. Total energy = 9476.6738 kcal/mol (9470.3628 without restraints) Performing minimization step: 1908. Total energy = 9473.1395 kcal/mol (9466.8301 without restraints) Performing minimization step: 1909. Total energy = 9469.6079 kcal/mol (9463.3003 without restraints) Performing minimization step: 1910. Total energy = 9466.0793 kcal/mol (9459.7734 without restraints) Performing minimization step: 1911. Total energy = 9462.5533 kcal/mol (9456.2492 without restraints) Performing minimization step: 1912. Total energy = 9459.0304 kcal/mol (9452.7280 without restraints) Performing minimization step: 1913. Total energy = 9455.5098 kcal/mol (9449.2090 without restraints) Performing minimization step: 1914. Total energy = 9451.9921 kcal/mol (9445.6931 without restraints) Performing minimization step: 1915. Total energy = 9448.4777 kcal/mol (9442.1803 without restraints) Performing minimization step: 1916. Total energy = 9444.9659 kcal/mol (9438.6704 without restraints) Performing minimization step: 1917. Total energy = 9441.4566 kcal/mol (9435.1628 without restraints) Performing minimization step: 1918. Total energy = 9437.9501 kcal/mol (9431.6579 without restraints) Performing minimization step: 1919. Total energy = 9434.4464 kcal/mol (9428.1558 without restraints) Performing minimization step: 1920. Total energy = 9430.9452 kcal/mol (9424.6563 without restraints) Performing minimization step: 1921. Total energy = 9427.4470 kcal/mol (9421.1599 without restraints) Performing minimization step: 1922. Total energy = 9423.9516 kcal/mol (9417.6661 without restraints) Performing minimization step: 1923. Total energy = 9420.4586 kcal/mol (9414.1748 without restraints) Performing minimization step: 1924. Total energy = 9416.9681 kcal/mol (9410.6860 without restraints) Performing minimization step: 1925. Total energy = 9413.4807 kcal/mol (9407.2003 without restraints) Performing minimization step: 1926. Total energy = 9409.9955 kcal/mol (9403.7168 without restraints) Performing minimization step: 1927. Total energy = 9406.5135 kcal/mol (9400.2365 without restraints) Performing minimization step: 1928. Total energy = 9403.0334 kcal/mol (9396.7581 without restraints) Performing minimization step: 1929. Total energy = 9399.5563 kcal/mol (9393.2827 without restraints) Performing minimization step: 1930. Total energy = 9396.0820 kcal/mol (9389.8101 without restraints) Performing minimization step: 1931. Total energy = 9392.6099 kcal/mol (9386.3397 without restraints) Performing minimization step: 1932. Total energy = 9389.1407 kcal/mol (9382.8723 without restraints) Performing minimization step: 1933. Total energy = 9385.6742 kcal/mol (9379.4073 without restraints) Performing minimization step: 1934. Total energy = 9382.2103 kcal/mol (9375.9451 without restraints) Performing minimization step: 1935. Total energy = 9378.7501 kcal/mol (9372.4866 without restraints) Performing minimization step: 1936. Total energy = 9375.2911 kcal/mol (9369.0292 without restraints) Performing minimization step: 1937. Total energy = 9371.8351 kcal/mol (9365.5749 without restraints) Performing minimization step: 1938. Total energy = 9368.3815 kcal/mol (9362.1230 without restraints) Performing minimization step: 1939. Total energy = 9364.9305 kcal/mol (9358.6736 without restraints) Performing minimization step: 1940. Total energy = 9361.4823 kcal/mol (9355.2271 without restraints) Performing minimization step: 1941. Total energy = 9358.0361 kcal/mol (9351.7826 without restraints) Performing minimization step: 1942. Total energy = 9354.5931 kcal/mol (9348.3412 without restraints) Performing minimization step: 1943. Total energy = 9351.1526 kcal/mol (9344.9024 without restraints) Performing minimization step: 1944. Total energy = 9347.7144 kcal/mol (9341.4660 without restraints) Performing minimization step: 1945. Total energy = 9344.2798 kcal/mol (9338.0333 without restraints) Performing minimization step: 1946. Total energy = 9340.8473 kcal/mol (9334.6021 without restraints) Performing minimization step: 1947. Total energy = 9337.4168 kcal/mol (9331.1734 without restraints) Performing minimization step: 1948. Total energy = 9333.9891 kcal/mol (9327.7473 without restraints) Performing minimization step: 1949. Total energy = 9330.5639 kcal/mol (9324.3237 without restraints) Performing minimization step: 1950. Total energy = 9327.1413 kcal/mol (9320.9028 without restraints) Performing minimization step: 1951. Total energy = 9323.7206 kcal/mol (9317.4838 without restraints) Performing minimization step: 1952. Total energy = 9320.3038 kcal/mol (9314.0686 without restraints) Performing minimization step: 1953. Total energy = 9316.8883 kcal/mol (9310.6548 without restraints) Performing minimization step: 1954. Total energy = 9313.4758 kcal/mol (9307.2439 without restraints) Performing minimization step: 1955. Total energy = 9310.0653 kcal/mol (9303.8350 without restraints) Performing minimization step: 1956. Total energy = 9306.6574 kcal/mol (9300.4288 without restraints) Performing minimization step: 1957. Total energy = 9303.2521 kcal/mol (9297.0252 without restraints) Performing minimization step: 1958. Total energy = 9299.8491 kcal/mol (9293.6237 without restraints) Performing minimization step: 1959. Total energy = 9296.4484 kcal/mol (9290.2247 without restraints) Performing minimization step: 1960. Total energy = 9293.0497 kcal/mol (9286.8276 without restraints) Performing minimization step: 1961. Total energy = 9289.6541 kcal/mol (9283.4337 without restraints) Performing minimization step: 1962. Total energy = 9286.2609 kcal/mol (9280.0422 without restraints) Performing minimization step: 1963. Total energy = 9282.8703 kcal/mol (9276.6531 without restraints) Performing minimization step: 1964. Total energy = 9279.4820 kcal/mol (9273.2665 without restraints) Performing minimization step: 1965. Total energy = 9276.0967 kcal/mol (9269.8829 without restraints) Performing minimization step: 1966. Total energy = 9272.7136 kcal/mol (9266.5014 without restraints) Performing minimization step: 1967. Total energy = 9269.3336 kcal/mol (9263.1231 without restraints) Performing minimization step: 1968. Total energy = 9265.9553 kcal/mol (9259.7465 without restraints) Performing minimization step: 1969. Total energy = 9262.5791 kcal/mol (9256.3718 without restraints) Performing minimization step: 1970. Total energy = 9259.2058 kcal/mol (9253.0002 without restraints) Performing minimization step: 1971. Total energy = 9255.8346 kcal/mol (9249.6306 without restraints) Performing minimization step: 1972. Total energy = 9252.4658 kcal/mol (9246.2635 without restraints) Performing minimization step: 1973. Total energy = 9249.0992 kcal/mol (9242.8984 without restraints) Performing minimization step: 1974. Total energy = 9245.7350 kcal/mol (9239.5359 without restraints) Performing minimization step: 1975. Total energy = 9242.3732 kcal/mol (9236.1757 without restraints) Performing minimization step: 1976. Total energy = 9239.0138 kcal/mol (9232.8179 without restraints) Performing minimization step: 1977. Total energy = 9235.6574 kcal/mol (9229.4633 without restraints) Performing minimization step: 1978. Total energy = 9232.3028 kcal/mol (9226.1102 without restraints) Performing minimization step: 1979. Total energy = 9228.9505 kcal/mol (9222.7595 without restraints) Performing minimization step: 1980. Total energy = 9225.6005 kcal/mol (9219.4111 without restraints) Performing minimization step: 1981. Total energy = 9222.2526 kcal/mol (9216.0648 without restraints) Performing minimization step: 1982. Total energy = 9218.9072 kcal/mol (9212.7210 without restraints) Performing minimization step: 1983. Total energy = 9215.5644 kcal/mol (9209.3799 without restraints) Performing minimization step: 1984. Total energy = 9212.2238 kcal/mol (9206.0409 without restraints) Performing minimization step: 1985. Total energy = 9208.8854 kcal/mol (9202.7041 without restraints) Performing minimization step: 1986. Total energy = 9205.5494 kcal/mol (9199.3696 without restraints) Performing minimization step: 1987. Total energy = 9202.2153 kcal/mol (9196.0371 without restraints) Performing minimization step: 1988. Total energy = 9198.8838 kcal/mol (9192.7073 without restraints) Performing minimization step: 1989. Total energy = 9195.5546 kcal/mol (9189.3797 without restraints) Performing minimization step: 1990. Total energy = 9192.2275 kcal/mol (9186.0543 without restraints) Performing minimization step: 1991. Total energy = 9188.9027 kcal/mol (9182.7311 without restraints) Performing minimization step: 1992. Total energy = 9185.5802 kcal/mol (9179.4102 without restraints) Performing minimization step: 1993. Total energy = 9182.2604 kcal/mol (9176.0920 without restraints) Performing minimization step: 1994. Total energy = 9178.9426 kcal/mol (9172.7758 without restraints) Performing minimization step: 1995. Total energy = 9175.6272 kcal/mol (9169.4619 without restraints) Performing minimization step: 1996. Total energy = 9172.3139 kcal/mol (9166.1502 without restraints) Performing minimization step: 1997. Total energy = 9169.0027 kcal/mol (9162.8406 without restraints) Performing minimization step: 1998. Total energy = 9165.6941 kcal/mol (9159.5337 without restraints) Performing minimization step: 1999. Total energy = 9162.3879 kcal/mol (9156.2290 without restraints) Performing minimization step: 2000. Total energy = 9159.0836 kcal/mol (9152.9263 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 9155.7817 kcal/mol (9149.6261 without restraints) Performing minimization step: 2002. Total energy = 9152.4821 kcal/mol (9146.3280 without restraints) Performing minimization step: 2003. Total energy = 9149.1850 kcal/mol (9143.0325 without restraints) Performing minimization step: 2004. Total energy = 9145.8893 kcal/mol (9139.7384 without restraints) Performing minimization step: 2005. Total energy = 9142.5961 kcal/mol (9136.4467 without restraints) Performing minimization step: 2006. Total energy = 9139.3052 kcal/mol (9133.1574 without restraints) Performing minimization step: 2007. Total energy = 9136.0163 kcal/mol (9129.8702 without restraints) Performing minimization step: 2008. Total energy = 9132.7294 kcal/mol (9126.5848 without restraints) Performing minimization step: 2009. Total energy = 9129.4451 kcal/mol (9123.3021 without restraints) Performing minimization step: 2010. Total energy = 9126.1632 kcal/mol (9120.0219 without restraints) Performing minimization step: 2011. Total energy = 9122.8832 kcal/mol (9116.7434 without restraints) Performing minimization step: 2012. Total energy = 9119.6050 kcal/mol (9113.4668 without restraints) Performing minimization step: 2013. Total energy = 9116.3292 kcal/mol (9110.1925 without restraints) Performing minimization step: 2014. Total energy = 9113.0560 kcal/mol (9106.9208 without restraints) Performing minimization step: 2015. Total energy = 9109.7846 kcal/mol (9103.6511 without restraints) Performing minimization step: 2016. Total energy = 9106.5149 kcal/mol (9100.3829 without restraints) Performing minimization step: 2017. Total energy = 9103.2482 kcal/mol (9097.1179 without restraints) Performing minimization step: 2018. Total energy = 9099.9836 kcal/mol (9093.8547 without restraints) Performing minimization step: 2019. Total energy = 9096.7206 kcal/mol (9090.5934 without restraints) Performing minimization step: 2020. Total energy = 9093.4598 kcal/mol (9087.3341 without restraints) Performing minimization step: 2021. Total energy = 9090.2009 kcal/mol (9084.0768 without restraints) Performing minimization step: 2022. Total energy = 9086.9443 kcal/mol (9080.8217 without restraints) Performing minimization step: 2023. Total energy = 9083.6897 kcal/mol (9077.5687 without restraints) Performing minimization step: 2024. Total energy = 9080.4375 kcal/mol (9074.3180 without restraints) Performing minimization step: 2025. Total energy = 9077.1873 kcal/mol (9071.0694 without restraints) Performing minimization step: 2026. Total energy = 9073.9390 kcal/mol (9067.8227 without restraints) Performing minimization step: 2027. Total energy = 9070.6927 kcal/mol (9064.5781 without restraints) Performing minimization step: 2028. Total energy = 9067.4485 kcal/mol (9061.3352 without restraints) Performing minimization step: 2029. Total energy = 9064.2068 kcal/mol (9058.0950 without restraints) Performing minimization step: 2030. Total energy = 9060.9667 kcal/mol (9054.8566 without restraints) Performing minimization step: 2031. Total energy = 9057.7287 kcal/mol (9051.6201 without restraints) Performing minimization step: 2032. Total energy = 9054.4928 kcal/mol (9048.3858 without restraints) Performing minimization step: 2033. Total energy = 9051.2589 kcal/mol (9045.1535 without restraints) Performing minimization step: 2034. Total energy = 9048.0271 kcal/mol (9041.9232 without restraints) Performing minimization step: 2035. Total energy = 9044.7976 kcal/mol (9038.6953 without restraints) Performing minimization step: 2036. Total energy = 9041.5700 kcal/mol (9035.4691 without restraints) Performing minimization step: 2037. Total energy = 9038.3443 kcal/mol (9032.2452 without restraints) Performing minimization step: 2038. Total energy = 9035.1207 kcal/mol (9029.0230 without restraints) Performing minimization step: 2039. Total energy = 9031.8989 kcal/mol (9025.8027 without restraints) Performing minimization step: 2040. Total energy = 9028.6793 kcal/mol (9022.5845 without restraints) Performing minimization step: 2041. Total energy = 9025.4615 kcal/mol (9019.3684 without restraints) Performing minimization step: 2042. Total energy = 9022.2461 kcal/mol (9016.1545 without restraints) Performing minimization step: 2043. Total energy = 9019.0325 kcal/mol (9012.9424 without restraints) Performing minimization step: 2044. Total energy = 9015.8208 kcal/mol (9009.7323 without restraints) Performing minimization step: 2045. Total energy = 9012.6112 kcal/mol (9006.5242 without restraints) Performing minimization step: 2046. Total energy = 9009.4036 kcal/mol (9003.3181 without restraints) Performing minimization step: 2047. Total energy = 9006.1980 kcal/mol (9000.1140 without restraints) Performing minimization step: 2048. Total energy = 9002.9940 kcal/mol (8996.9114 without restraints) Performing minimization step: 2049. Total energy = 8999.7922 kcal/mol (8993.7113 without restraints) Performing minimization step: 2050. Total energy = 8996.5921 kcal/mol (8990.5127 without restraints) Performing minimization step: 2051. Total energy = 8993.3944 kcal/mol (8987.3166 without restraints) Performing minimization step: 2052. Total energy = 8990.1987 kcal/mol (8984.1226 without restraints) Performing minimization step: 2053. Total energy = 8987.0046 kcal/mol (8980.9298 without restraints) Performing minimization step: 2054. Total energy = 8983.8125 kcal/mol (8977.7393 without restraints) Performing minimization step: 2055. Total energy = 8980.6227 kcal/mol (8974.5510 without restraints) Performing minimization step: 2056. Total energy = 8977.4346 kcal/mol (8971.3645 without restraints) Performing minimization step: 2057. Total energy = 8974.2485 kcal/mol (8968.1798 without restraints) Performing minimization step: 2058. Total energy = 8971.0642 kcal/mol (8964.9971 without restraints) Performing minimization step: 2059. Total energy = 8967.8818 kcal/mol (8961.8161 without restraints) Performing minimization step: 2060. Total energy = 8964.7014 kcal/mol (8958.6372 without restraints) Performing minimization step: 2061. Total energy = 8961.5226 kcal/mol (8955.4601 without restraints) Performing minimization step: 2062. Total energy = 8958.3457 kcal/mol (8952.2845 without restraints) Performing minimization step: 2063. Total energy = 8955.1711 kcal/mol (8949.1115 without restraints) Performing minimization step: 2064. Total energy = 8951.9981 kcal/mol (8945.9399 without restraints) Performing minimization step: 2065. Total energy = 8948.8274 kcal/mol (8942.7707 without restraints) Performing minimization step: 2066. Total energy = 8945.6580 kcal/mol (8939.6029 without restraints) Performing minimization step: 2067. Total energy = 8942.4908 kcal/mol (8936.4374 without restraints) Performing minimization step: 2068. Total energy = 8939.3256 kcal/mol (8933.2735 without restraints) Performing minimization step: 2069. Total energy = 8936.1619 kcal/mol (8930.1113 without restraints) Performing minimization step: 2070. Total energy = 8933.0003 kcal/mol (8926.9513 without restraints) Performing minimization step: 2071. Total energy = 8929.8409 kcal/mol (8923.7932 without restraints) Performing minimization step: 2072. Total energy = 8926.6830 kcal/mol (8920.6368 without restraints) Performing minimization step: 2073. Total energy = 8923.5265 kcal/mol (8917.4819 without restraints) Performing minimization step: 2074. Total energy = 8920.3720 kcal/mol (8914.3288 without restraints) Performing minimization step: 2075. Total energy = 8917.2196 kcal/mol (8911.1778 without restraints) Performing minimization step: 2076. Total energy = 8914.0689 kcal/mol (8908.0289 without restraints) Performing minimization step: 2077. Total energy = 8910.9200 kcal/mol (8904.8813 without restraints) Performing minimization step: 2078. Total energy = 8907.7727 kcal/mol (8901.7355 without restraints) Performing minimization step: 2079. Total energy = 8904.6273 kcal/mol (8898.5916 without restraints) Performing minimization step: 2080. Total energy = 8901.4841 kcal/mol (8895.4499 without restraints) Performing minimization step: 2081. Total energy = 8898.3423 kcal/mol (8892.3095 without restraints) Performing minimization step: 2082. Total energy = 8895.2025 kcal/mol (8889.1712 without restraints) Performing minimization step: 2083. Total energy = 8892.0644 kcal/mol (8886.0348 without restraints) Performing minimization step: 2084. Total energy = 8888.9284 kcal/mol (8882.9001 without restraints) Performing minimization step: 2085. Total energy = 8885.7938 kcal/mol (8879.7671 without restraints) Performing minimization step: 2086. Total energy = 8882.6610 kcal/mol (8876.6357 without restraints) Performing minimization step: 2087. Total energy = 8879.5299 kcal/mol (8873.5060 without restraints) Performing minimization step: 2088. Total energy = 8876.4011 kcal/mol (8870.3787 without restraints) Performing minimization step: 2089. Total energy = 8873.2734 kcal/mol (8867.2524 without restraints) Performing minimization step: 2090. Total energy = 8870.1478 kcal/mol (8864.1283 without restraints) Performing minimization step: 2091. Total energy = 8867.0234 kcal/mol (8861.0055 without restraints) Performing minimization step: 2092. Total energy = 8863.9011 kcal/mol (8857.8846 without restraints) Performing minimization step: 2093. Total energy = 8860.7808 kcal/mol (8854.7659 without restraints) Performing minimization step: 2094. Total energy = 8857.6620 kcal/mol (8851.6484 without restraints) Performing minimization step: 2095. Total energy = 8854.5449 kcal/mol (8848.5328 without restraints) Performing minimization step: 2096. Total energy = 8851.4295 kcal/mol (8845.4189 without restraints) Performing minimization step: 2097. Total energy = 8848.3158 kcal/mol (8842.3066 without restraints) Performing minimization step: 2098. Total energy = 8845.2036 kcal/mol (8839.1959 without restraints) Performing minimization step: 2099. Total energy = 8842.0935 kcal/mol (8836.0873 without restraints) Performing minimization step: 2100. Total energy = 8838.9851 kcal/mol (8832.9803 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 8835.8784 kcal/mol (8829.8751 without restraints) Performing minimization step: 2102. Total energy = 8832.7730 kcal/mol (8826.7711 without restraints) Performing minimization step: 2103. Total energy = 8829.6696 kcal/mol (8823.6691 without restraints) Performing minimization step: 2104. Total energy = 8826.5679 kcal/mol (8820.5690 without restraints) Performing minimization step: 2105. Total energy = 8823.4679 kcal/mol (8817.4704 without restraints) Performing minimization step: 2106. Total energy = 8820.3694 kcal/mol (8814.3734 without restraints) Performing minimization step: 2107. Total energy = 8817.2728 kcal/mol (8811.2783 without restraints) Performing minimization step: 2108. Total energy = 8814.1781 kcal/mol (8808.1849 without restraints) Performing minimization step: 2109. Total energy = 8811.0848 kcal/mol (8805.0929 without restraints) Performing minimization step: 2110. Total energy = 8807.9932 kcal/mol (8802.0029 without restraints) Performing minimization step: 2111. Total energy = 8804.9030 kcal/mol (8798.9142 without restraints) Performing minimization step: 2112. Total energy = 8801.8144 kcal/mol (8795.8270 without restraints) Performing minimization step: 2113. Total energy = 8798.7274 kcal/mol (8792.7414 without restraints) Performing minimization step: 2114. Total energy = 8795.6422 kcal/mol (8789.6576 without restraints) Performing minimization step: 2115. Total energy = 8792.5583 kcal/mol (8786.5754 without restraints) Performing minimization step: 2116. Total energy = 8789.4766 kcal/mol (8783.4949 without restraints) Performing minimization step: 2117. Total energy = 8786.3966 kcal/mol (8780.4165 without restraints) Performing minimization step: 2118. Total energy = 8783.3183 kcal/mol (8777.3395 without restraints) Performing minimization step: 2119. Total energy = 8780.2414 kcal/mol (8774.2642 without restraints) Performing minimization step: 2120. Total energy = 8777.1661 kcal/mol (8771.1902 without restraints) Performing minimization step: 2121. Total energy = 8774.0927 kcal/mol (8768.1183 without restraints) Performing minimization step: 2122. Total energy = 8771.0205 kcal/mol (8765.0475 without restraints) Performing minimization step: 2123. Total energy = 8767.9499 kcal/mol (8761.9783 without restraints) Performing minimization step: 2124. Total energy = 8764.8809 kcal/mol (8758.9107 without restraints) Performing minimization step: 2125. Total energy = 8761.8137 kcal/mol (8755.8449 without restraints) Performing minimization step: 2126. Total energy = 8758.7482 kcal/mol (8752.7809 without restraints) Performing minimization step: 2127. Total energy = 8755.6842 kcal/mol (8749.7183 without restraints) Performing minimization step: 2128. Total energy = 8752.6216 kcal/mol (8746.6570 without restraints) Performing minimization step: 2129. Total energy = 8749.5605 kcal/mol (8743.5974 without restraints) Performing minimization step: 2130. Total energy = 8746.5003 kcal/mol (8740.5387 without restraints) Performing minimization step: 2131. Total energy = 8743.4429 kcal/mol (8737.4827 without restraints) Performing minimization step: 2132. Total energy = 8740.3868 kcal/mol (8734.4279 without restraints) Performing minimization step: 2133. Total energy = 8737.3323 kcal/mol (8731.3751 without restraints) Performing minimization step: 2134. Total energy = 8734.2790 kcal/mol (8728.3229 without restraints) Performing minimization step: 2135. Total energy = 8731.2275 kcal/mol (8725.2730 without restraints) Performing minimization step: 2136. Total energy = 8728.1775 kcal/mol (8722.2243 without restraints) Performing minimization step: 2137. Total energy = 8725.1294 kcal/mol (8719.1777 without restraints) Performing minimization step: 2138. Total energy = 8722.0828 kcal/mol (8716.1324 without restraints) Performing minimization step: 2139. Total energy = 8719.0372 kcal/mol (8713.0883 without restraints) Performing minimization step: 2140. Total energy = 8715.9932 kcal/mol (8710.0456 without restraints) Performing minimization step: 2141. Total energy = 8712.9507 kcal/mol (8707.0044 without restraints) Performing minimization step: 2142. Total energy = 8709.9096 kcal/mol (8703.9648 without restraints) Performing minimization step: 2143. Total energy = 8706.8700 kcal/mol (8700.9266 without restraints) Performing minimization step: 2144. Total energy = 8703.8322 kcal/mol (8697.8902 without restraints) Performing minimization step: 2145. Total energy = 8700.7954 kcal/mol (8694.8548 without restraints) Performing minimization step: 2146. Total energy = 8697.7604 kcal/mol (8691.8213 without restraints) Performing minimization step: 2147. Total energy = 8694.7268 kcal/mol (8688.7890 without restraints) Performing minimization step: 2148. Total energy = 8691.6949 kcal/mol (8685.7586 without restraints) Performing minimization step: 2149. Total energy = 8688.6644 kcal/mol (8682.7295 without restraints) Performing minimization step: 2150. Total energy = 8685.6356 kcal/mol (8679.7020 without restraints) Performing minimization step: 2151. Total energy = 8682.6081 kcal/mol (8676.6759 without restraints) Performing minimization step: 2152. Total energy = 8679.5826 kcal/mol (8673.6517 without restraints) Performing minimization step: 2153. Total energy = 8676.5580 kcal/mol (8670.6287 without restraints) Performing minimization step: 2154. Total energy = 8673.5349 kcal/mol (8667.6069 without restraints) Performing minimization step: 2155. Total energy = 8670.5131 kcal/mol (8664.5865 without restraints) Performing minimization step: 2156. Total energy = 8667.4931 kcal/mol (8661.5678 without restraints) Performing minimization step: 2157. Total energy = 8664.4745 kcal/mol (8658.5506 without restraints) Performing minimization step: 2158. Total energy = 8661.4570 kcal/mol (8655.5345 without restraints) Performing minimization step: 2159. Total energy = 8658.4415 kcal/mol (8652.5204 without restraints) Performing minimization step: 2160. Total energy = 8655.4272 kcal/mol (8649.5076 without restraints) Performing minimization step: 2161. Total energy = 8652.4146 kcal/mol (8646.4963 without restraints) Performing minimization step: 2162. Total energy = 8649.4030 kcal/mol (8643.4860 without restraints) Performing minimization step: 2163. Total energy = 8646.3928 kcal/mol (8640.4772 without restraints) Performing minimization step: 2164. Total energy = 8643.3840 kcal/mol (8637.4698 without restraints) Performing minimization step: 2165. Total energy = 8640.3765 kcal/mol (8634.4636 without restraints) Performing minimization step: 2166. Total energy = 8637.3705 kcal/mol (8631.4590 without restraints) Performing minimization step: 2167. Total energy = 8634.3660 kcal/mol (8628.4559 without restraints) Performing minimization step: 2168. Total energy = 8631.3637 kcal/mol (8625.4549 without restraints) Performing minimization step: 2169. Total energy = 8628.3619 kcal/mol (8622.4545 without restraints) Performing minimization step: 2170. Total energy = 8625.3615 kcal/mol (8619.4554 without restraints) Performing minimization step: 2171. Total energy = 8622.3628 kcal/mol (8616.4581 without restraints) Performing minimization step: 2172. Total energy = 8619.3651 kcal/mol (8613.4618 without restraints) Performing minimization step: 2173. Total energy = 8616.3688 kcal/mol (8610.4668 without restraints) Performing minimization step: 2174. Total energy = 8613.3742 kcal/mol (8607.4736 without restraints) Performing minimization step: 2175. Total energy = 8610.3808 kcal/mol (8604.4816 without restraints) Performing minimization step: 2176. Total energy = 8607.3894 kcal/mol (8601.4915 without restraints) Performing minimization step: 2177. Total energy = 8604.3988 kcal/mol (8598.5023 without restraints) Performing minimization step: 2178. Total energy = 8601.4101 kcal/mol (8595.5149 without restraints) Performing minimization step: 2179. Total energy = 8598.4223 kcal/mol (8592.5285 without restraints) Performing minimization step: 2180. Total energy = 8595.4354 kcal/mol (8589.5430 without restraints) Performing minimization step: 2181. Total energy = 8592.4503 kcal/mol (8586.5592 without restraints) Performing minimization step: 2182. Total energy = 8589.4665 kcal/mol (8583.5767 without restraints) Performing minimization step: 2183. Total energy = 8586.4842 kcal/mol (8580.5958 without restraints) Performing minimization step: 2184. Total energy = 8583.5034 kcal/mol (8577.6163 without restraints) Performing minimization step: 2185. Total energy = 8580.5238 kcal/mol (8574.6380 without restraints) Performing minimization step: 2186. Total energy = 8577.5452 kcal/mol (8571.6607 without restraints) Performing minimization step: 2187. Total energy = 8574.5680 kcal/mol (8568.6849 without restraints) Performing minimization step: 2188. Total energy = 8571.5920 kcal/mol (8565.7103 without restraints) Performing minimization step: 2189. Total energy = 8568.6177 kcal/mol (8562.7373 without restraints) Performing minimization step: 2190. Total energy = 8565.6448 kcal/mol (8559.7658 without restraints) Performing minimization step: 2191. Total energy = 8562.6733 kcal/mol (8556.7957 without restraints) Performing minimization step: 2192. Total energy = 8559.7029 kcal/mol (8553.8266 without restraints) Performing minimization step: 2193. Total energy = 8556.7337 kcal/mol (8550.8587 without restraints) Performing minimization step: 2194. Total energy = 8553.7659 kcal/mol (8547.8922 without restraints) Performing minimization step: 2195. Total energy = 8550.7992 kcal/mol (8544.9269 without restraints) Performing minimization step: 2196. Total energy = 8547.8341 kcal/mol (8541.9632 without restraints) Performing minimization step: 2197. Total energy = 8544.8698 kcal/mol (8539.0001 without restraints) Performing minimization step: 2198. Total energy = 8541.9070 kcal/mol (8536.0387 without restraints) Performing minimization step: 2199. Total energy = 8538.9453 kcal/mol (8533.0783 without restraints) Performing minimization step: 2200. Total energy = 8535.9854 kcal/mol (8530.1197 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 8533.0266 kcal/mol (8527.1623 without restraints) Performing minimization step: 2202. Total energy = 8530.0691 kcal/mol (8524.2061 without restraints) Performing minimization step: 2203. Total energy = 8527.1129 kcal/mol (8521.2512 without restraints) Performing minimization step: 2204. Total energy = 8524.1571 kcal/mol (8518.2967 without restraints) Performing minimization step: 2205. Total energy = 8521.2032 kcal/mol (8515.3440 without restraints) Performing minimization step: 2206. Total energy = 8518.2512 kcal/mol (8512.3936 without restraints) Performing minimization step: 2207. Total energy = 8515.3001 kcal/mol (8509.4437 without restraints) Performing minimization step: 2208. Total energy = 8512.3498 kcal/mol (8506.4946 without restraints) Performing minimization step: 2209. Total energy = 8509.4014 kcal/mol (8503.5476 without restraints) Performing minimization step: 2210. Total energy = 8506.4540 kcal/mol (8500.6014 without restraints) Performing minimization step: 2211. Total energy = 8503.5076 kcal/mol (8497.6565 without restraints) Performing minimization step: 2212. Total energy = 8500.5630 kcal/mol (8494.7131 without restraints) Performing minimization step: 2213. Total energy = 8497.6191 kcal/mol (8491.7706 without restraints) Performing minimization step: 2214. Total energy = 8494.6765 kcal/mol (8488.8293 without restraints) Performing minimization step: 2215. Total energy = 8491.7355 kcal/mol (8485.8896 without restraints) Performing minimization step: 2216. Total energy = 8488.7957 kcal/mol (8482.9511 without restraints) Performing minimization step: 2217. Total energy = 8485.8569 kcal/mol (8480.0137 without restraints) Performing minimization step: 2218. Total energy = 8482.9196 kcal/mol (8477.0775 without restraints) Performing minimization step: 2219. Total energy = 8479.9835 kcal/mol (8474.1428 without restraints) Performing minimization step: 2220. Total energy = 8477.0484 kcal/mol (8471.2090 without restraints) Performing minimization step: 2221. Total energy = 8474.1145 kcal/mol (8468.2763 without restraints) Performing minimization step: 2222. Total energy = 8471.1818 kcal/mol (8465.3450 without restraints) Performing minimization step: 2223. Total energy = 8468.2507 kcal/mol (8462.4151 without restraints) Performing minimization step: 2224. Total energy = 8465.3203 kcal/mol (8459.4861 without restraints) Performing minimization step: 2225. Total energy = 8462.3915 kcal/mol (8456.5586 without restraints) Performing minimization step: 2226. Total energy = 8459.4642 kcal/mol (8453.6326 without restraints) Performing minimization step: 2227. Total energy = 8456.5375 kcal/mol (8450.7072 without restraints) Performing minimization step: 2228. Total energy = 8453.6121 kcal/mol (8447.7830 without restraints) Performing minimization step: 2229. Total energy = 8450.6879 kcal/mol (8444.8601 without restraints) Performing minimization step: 2230. Total energy = 8447.7648 kcal/mol (8441.9384 without restraints) Performing minimization step: 2231. Total energy = 8444.8432 kcal/mol (8439.0181 without restraints) Performing minimization step: 2232. Total energy = 8441.9227 kcal/mol (8436.0988 without restraints) Performing minimization step: 2233. Total energy = 8439.0032 kcal/mol (8433.1807 without restraints) Performing minimization step: 2234. Total energy = 8436.0856 kcal/mol (8430.2643 without restraints) Performing minimization step: 2235. Total energy = 8433.1687 kcal/mol (8427.3486 without restraints) Performing minimization step: 2236. Total energy = 8430.2528 kcal/mol (8424.4341 without restraints) Performing minimization step: 2237. Total energy = 8427.3381 kcal/mol (8421.5206 without restraints) Performing minimization step: 2238. Total energy = 8424.4243 kcal/mol (8418.6081 without restraints) Performing minimization step: 2239. Total energy = 8421.5127 kcal/mol (8415.6977 without restraints) Performing minimization step: 2240. Total energy = 8418.6012 kcal/mol (8412.7876 without restraints) Performing minimization step: 2241. Total energy = 8415.6910 kcal/mol (8409.8786 without restraints) Performing minimization step: 2242. Total energy = 8412.7824 kcal/mol (8406.9713 without restraints) Performing minimization step: 2243. Total energy = 8409.8747 kcal/mol (8404.0648 without restraints) Performing minimization step: 2244. Total energy = 8406.9680 kcal/mol (8401.1593 without restraints) Performing minimization step: 2245. Total energy = 8404.0623 kcal/mol (8398.2550 without restraints) Performing minimization step: 2246. Total energy = 8401.1582 kcal/mol (8395.3521 without restraints) Performing minimization step: 2247. Total energy = 8398.2550 kcal/mol (8392.4502 without restraints) Performing minimization step: 2248. Total energy = 8395.3518 kcal/mol (8389.5483 without restraints) Performing minimization step: 2249. Total energy = 8392.4509 kcal/mol (8386.6487 without restraints) Performing minimization step: 2250. Total energy = 8389.5508 kcal/mol (8383.7498 without restraints) Performing minimization step: 2251. Total energy = 8386.6519 kcal/mol (8380.8522 without restraints) Performing minimization step: 2252. Total energy = 8383.7541 kcal/mol (8377.9557 without restraints) Performing minimization step: 2253. Total energy = 8380.8570 kcal/mol (8375.0597 without restraints) Performing minimization step: 2254. Total energy = 8377.9611 kcal/mol (8372.1652 without restraints) Performing minimization step: 2255. Total energy = 8375.0664 kcal/mol (8369.2718 without restraints) Performing minimization step: 2256. Total energy = 8372.1731 kcal/mol (8366.3798 without restraints) Performing minimization step: 2257. Total energy = 8369.2811 kcal/mol (8363.4890 without restraints) Performing minimization step: 2258. Total energy = 8366.3907 kcal/mol (8360.5998 without restraints) Performing minimization step: 2259. Total energy = 8363.5007 kcal/mol (8357.7111 without restraints) Performing minimization step: 2260. Total energy = 8360.6120 kcal/mol (8354.8237 without restraints) Performing minimization step: 2261. Total energy = 8357.7242 kcal/mol (8351.9370 without restraints) Performing minimization step: 2262. Total energy = 8354.8374 kcal/mol (8349.0515 without restraints) Performing minimization step: 2263. Total energy = 8351.9519 kcal/mol (8346.1673 without restraints) Performing minimization step: 2264. Total energy = 8349.0675 kcal/mol (8343.2841 without restraints) Performing minimization step: 2265. Total energy = 8346.1837 kcal/mol (8340.4016 without restraints) Performing minimization step: 2266. Total energy = 8343.3017 kcal/mol (8337.5208 without restraints) Performing minimization step: 2267. Total energy = 8340.4204 kcal/mol (8334.6409 without restraints) Performing minimization step: 2268. Total energy = 8337.5402 kcal/mol (8331.7618 without restraints) Performing minimization step: 2269. Total energy = 8334.6610 kcal/mol (8328.8839 without restraints) Performing minimization step: 2270. Total energy = 8331.7829 kcal/mol (8326.0070 without restraints) Performing minimization step: 2271. Total energy = 8328.9063 kcal/mol (8323.1316 without restraints) Performing minimization step: 2272. Total energy = 8326.0306 kcal/mol (8320.2572 without restraints) Performing minimization step: 2273. Total energy = 8323.1559 kcal/mol (8317.3839 without restraints) Performing minimization step: 2274. Total energy = 8320.2822 kcal/mol (8314.5112 without restraints) Performing minimization step: 2275. Total energy = 8317.4096 kcal/mol (8311.6399 without restraints) Performing minimization step: 2276. Total energy = 8314.5376 kcal/mol (8308.7691 without restraints) Performing minimization step: 2277. Total energy = 8311.6666 kcal/mol (8305.8993 without restraints) Performing minimization step: 2278. Total energy = 8308.7968 kcal/mol (8303.0307 without restraints) Performing minimization step: 2279. Total energy = 8305.9281 kcal/mol (8300.1633 without restraints) Performing minimization step: 2280. Total energy = 8303.0605 kcal/mol (8297.2969 without restraints) Performing minimization step: 2281. Total energy = 8300.1942 kcal/mol (8294.4319 without restraints) Performing minimization step: 2282. Total energy = 8297.3289 kcal/mol (8291.5678 without restraints) Performing minimization step: 2283. Total energy = 8294.4644 kcal/mol (8288.7045 without restraints) Performing minimization step: 2284. Total energy = 8291.6009 kcal/mol (8285.8423 without restraints) Performing minimization step: 2285. Total energy = 8288.7388 kcal/mol (8282.9813 without restraints) Performing minimization step: 2286. Total energy = 8285.8776 kcal/mol (8280.1214 without restraints) Performing minimization step: 2287. Total energy = 8283.0172 kcal/mol (8277.2622 without restraints) Performing minimization step: 2288. Total energy = 8280.1580 kcal/mol (8274.4042 without restraints) Performing minimization step: 2289. Total energy = 8277.2995 kcal/mol (8271.5470 without restraints) Performing minimization step: 2290. Total energy = 8274.4422 kcal/mol (8268.6909 without restraints) Performing minimization step: 2291. Total energy = 8271.5862 kcal/mol (8265.8362 without restraints) Performing minimization step: 2292. Total energy = 8268.7311 kcal/mol (8262.9822 without restraints) Performing minimization step: 2293. Total energy = 8265.8767 kcal/mol (8260.1290 without restraints) Performing minimization step: 2294. Total energy = 8263.0236 kcal/mol (8257.2771 without restraints) Performing minimization step: 2295. Total energy = 8260.1714 kcal/mol (8254.4261 without restraints) Performing minimization step: 2296. Total energy = 8257.3203 kcal/mol (8251.5763 without restraints) Performing minimization step: 2297. Total energy = 8254.4705 kcal/mol (8248.7277 without restraints) Performing minimization step: 2298. Total energy = 8251.6213 kcal/mol (8245.8798 without restraints) Performing minimization step: 2299. Total energy = 8248.7734 kcal/mol (8243.0330 without restraints) Performing minimization step: 2300. Total energy = 8245.9265 kcal/mol (8240.1872 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 8243.0803 kcal/mol (8237.3424 without restraints) Performing minimization step: 2302. Total energy = 8240.2352 kcal/mol (8234.4984 without restraints) Performing minimization step: 2303. Total energy = 8237.3911 kcal/mol (8231.6555 without restraints) Performing minimization step: 2304. Total energy = 8234.5475 kcal/mol (8228.8131 without restraints) Performing minimization step: 2305. Total energy = 8231.7052 kcal/mol (8225.9721 without restraints) Performing minimization step: 2306. Total energy = 8228.8639 kcal/mol (8223.1320 without restraints) Performing minimization step: 2307. Total energy = 8226.0236 kcal/mol (8220.2928 without restraints) Performing minimization step: 2308. Total energy = 8223.1842 kcal/mol (8217.4546 without restraints) Performing minimization step: 2309. Total energy = 8220.3460 kcal/mol (8214.6176 without restraints) Performing minimization step: 2310. Total energy = 8217.5088 kcal/mol (8211.7815 without restraints) Performing minimization step: 2311. Total energy = 8214.6723 kcal/mol (8208.9462 without restraints) Performing minimization step: 2312. Total energy = 8211.8367 kcal/mol (8206.1117 without restraints) Performing minimization step: 2313. Total energy = 8209.0018 kcal/mol (8203.2782 without restraints) Performing minimization step: 2314. Total energy = 8206.1686 kcal/mol (8200.4462 without restraints) Performing minimization step: 2315. Total energy = 8203.3359 kcal/mol (8197.6146 without restraints) Performing minimization step: 2316. Total energy = 8200.5042 kcal/mol (8194.7842 without restraints) Performing minimization step: 2317. Total energy = 8197.6736 kcal/mol (8191.9547 without restraints) Performing minimization step: 2318. Total energy = 8194.8443 kcal/mol (8189.1266 without restraints) Performing minimization step: 2319. Total energy = 8192.0158 kcal/mol (8186.2993 without restraints) Performing minimization step: 2320. Total energy = 8189.1881 kcal/mol (8183.4728 without restraints) Performing minimization step: 2321. Total energy = 8186.3613 kcal/mol (8180.6471 without restraints) Performing minimization step: 2322. Total energy = 8183.5353 kcal/mol (8177.8225 without restraints) Performing minimization step: 2323. Total energy = 8180.7108 kcal/mol (8174.9990 without restraints) Performing minimization step: 2324. Total energy = 8177.8868 kcal/mol (8172.1762 without restraints) Performing minimization step: 2325. Total energy = 8175.0636 kcal/mol (8169.3542 without restraints) Performing minimization step: 2326. Total energy = 8172.2417 kcal/mol (8166.5336 without restraints) Performing minimization step: 2327. Total energy = 8169.4208 kcal/mol (8163.7137 without restraints) Performing minimization step: 2328. Total energy = 8166.6005 kcal/mol (8160.8948 without restraints) Performing minimization step: 2329. Total energy = 8163.7813 kcal/mol (8158.0766 without restraints) Performing minimization step: 2330. Total energy = 8160.9629 kcal/mol (8155.2594 without restraints) Performing minimization step: 2331. Total energy = 8158.1456 kcal/mol (8152.4432 without restraints) Performing minimization step: 2332. Total energy = 8155.3291 kcal/mol (8149.6279 without restraints) Performing minimization step: 2333. Total energy = 8152.5139 kcal/mol (8146.8141 without restraints) Performing minimization step: 2334. Total energy = 8149.6996 kcal/mol (8144.0007 without restraints) Performing minimization step: 2335. Total energy = 8146.8858 kcal/mol (8141.1881 without restraints) Performing minimization step: 2336. Total energy = 8144.0731 kcal/mol (8138.3766 without restraints) Performing minimization step: 2337. Total energy = 8141.2609 kcal/mol (8135.5654 without restraints) Performing minimization step: 2338. Total energy = 8138.4497 kcal/mol (8132.7555 without restraints) Performing minimization step: 2339. Total energy = 8135.6396 kcal/mol (8129.9466 without restraints) Performing minimization step: 2340. Total energy = 8132.8305 kcal/mol (8127.1387 without restraints) Performing minimization step: 2341. Total energy = 8130.0227 kcal/mol (8124.3321 without restraints) Performing minimization step: 2342. Total energy = 8127.2156 kcal/mol (8121.5261 without restraints) Performing minimization step: 2343. Total energy = 8124.4094 kcal/mol (8118.7210 without restraints) Performing minimization step: 2344. Total energy = 8121.6040 kcal/mol (8115.9168 without restraints) Performing minimization step: 2345. Total energy = 8118.7996 kcal/mol (8113.1136 without restraints) Performing minimization step: 2346. Total energy = 8115.9958 kcal/mol (8110.3110 without restraints) Performing minimization step: 2347. Total energy = 8113.1931 kcal/mol (8107.5093 without restraints) Performing minimization step: 2348. Total energy = 8110.3911 kcal/mol (8104.7086 without restraints) Performing minimization step: 2349. Total energy = 8107.5901 kcal/mol (8101.9087 without restraints) Performing minimization step: 2350. Total energy = 8104.7903 kcal/mol (8099.1100 without restraints) Performing minimization step: 2351. Total energy = 8101.9913 kcal/mol (8096.3121 without restraints) Performing minimization step: 2352. Total energy = 8099.1929 kcal/mol (8093.5150 without restraints) Performing minimization step: 2353. Total energy = 8096.3958 kcal/mol (8090.7192 without restraints) Performing minimization step: 2354. Total energy = 8093.5994 kcal/mol (8087.9237 without restraints) Performing minimization step: 2355. Total energy = 8090.8039 kcal/mol (8085.1294 without restraints) Performing minimization step: 2356. Total energy = 8088.0091 kcal/mol (8082.3358 without restraints) Performing minimization step: 2357. Total energy = 8085.2154 kcal/mol (8079.5433 without restraints) Performing minimization step: 2358. Total energy = 8082.4228 kcal/mol (8076.7517 without restraints) Performing minimization step: 2359. Total energy = 8079.6311 kcal/mol (8073.9612 without restraints) Performing minimization step: 2360. Total energy = 8076.8401 kcal/mol (8071.1712 without restraints) Performing minimization step: 2361. Total energy = 8074.0500 kcal/mol (8068.3824 without restraints) Performing minimization step: 2362. Total energy = 8071.2607 kcal/mol (8065.5942 without restraints) Performing minimization step: 2363. Total energy = 8068.4724 kcal/mol (8062.8071 without restraints) Performing minimization step: 2364. Total energy = 8065.6852 kcal/mol (8060.0210 without restraints) Performing minimization step: 2365. Total energy = 8062.8980 kcal/mol (8057.2348 without restraints) Performing minimization step: 2366. Total energy = 8060.1122 kcal/mol (8054.4503 without restraints) Performing minimization step: 2367. Total energy = 8057.3275 kcal/mol (8051.6667 without restraints) Performing minimization step: 2368. Total energy = 8054.5435 kcal/mol (8048.8838 without restraints) Performing minimization step: 2369. Total energy = 8051.7604 kcal/mol (8046.1019 without restraints) Performing minimization step: 2370. Total energy = 8048.9784 kcal/mol (8043.3211 without restraints) Performing minimization step: 2371. Total energy = 8046.1967 kcal/mol (8040.5405 without restraints) Performing minimization step: 2372. Total energy = 8043.4160 kcal/mol (8037.7609 without restraints) Performing minimization step: 2373. Total energy = 8040.6368 kcal/mol (8034.9830 without restraints) Performing minimization step: 2374. Total energy = 8037.8585 kcal/mol (8032.2057 without restraints) Performing minimization step: 2375. Total energy = 8035.0805 kcal/mol (8029.4289 without restraints) Performing minimization step: 2376. Total energy = 8032.3036 kcal/mol (8026.6530 without restraints) Performing minimization step: 2377. Total energy = 8029.5275 kcal/mol (8023.8781 without restraints) Performing minimization step: 2378. Total energy = 8026.7524 kcal/mol (8021.1040 without restraints) Performing minimization step: 2379. Total energy = 8023.9781 kcal/mol (8018.3309 without restraints) Performing minimization step: 2380. Total energy = 8021.2045 kcal/mol (8015.5585 without restraints) Performing minimization step: 2381. Total energy = 8018.4318 kcal/mol (8012.7868 without restraints) Performing minimization step: 2382. Total energy = 8015.6597 kcal/mol (8010.0159 without restraints) Performing minimization step: 2383. Total energy = 8012.8890 kcal/mol (8007.2464 without restraints) Performing minimization step: 2384. Total energy = 8010.1190 kcal/mol (8004.4774 without restraints) Performing minimization step: 2385. Total energy = 8007.3496 kcal/mol (8001.7091 without restraints) Performing minimization step: 2386. Total energy = 8004.5813 kcal/mol (7998.9419 without restraints) Performing minimization step: 2387. Total energy = 8001.8141 kcal/mol (7996.1758 without restraints) Performing minimization step: 2388. Total energy = 7999.0471 kcal/mol (7993.4099 without restraints) Performing minimization step: 2389. Total energy = 7996.2810 kcal/mol (7990.6450 without restraints) Performing minimization step: 2390. Total energy = 7993.5160 kcal/mol (7987.8812 without restraints) Performing minimization step: 2391. Total energy = 7990.7513 kcal/mol (7985.1175 without restraints) Performing minimization step: 2392. Total energy = 7987.9878 kcal/mol (7982.3552 without restraints) Performing minimization step: 2393. Total energy = 7985.2255 kcal/mol (7979.5940 without restraints) Performing minimization step: 2394. Total energy = 7982.4638 kcal/mol (7976.8333 without restraints) Performing minimization step: 2395. Total energy = 7979.7028 kcal/mol (7974.0734 without restraints) Performing minimization step: 2396. Total energy = 7976.9427 kcal/mol (7971.3145 without restraints) Performing minimization step: 2397. Total energy = 7974.1837 kcal/mol (7968.5566 without restraints) Performing minimization step: 2398. Total energy = 7971.4254 kcal/mol (7965.7994 without restraints) Performing minimization step: 2399. Total energy = 7968.6676 kcal/mol (7963.0427 without restraints) Performing minimization step: 2400. Total energy = 7965.9110 kcal/mol (7960.2872 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 7963.1555 kcal/mol (7957.5328 without restraints) Performing minimization step: 2402. Total energy = 7960.4005 kcal/mol (7954.7789 without restraints) Performing minimization step: 2403. Total energy = 7957.6463 kcal/mol (7952.0259 without restraints) Performing minimization step: 2404. Total energy = 7954.8937 kcal/mol (7949.2744 without restraints) Performing minimization step: 2405. Total energy = 7952.1413 kcal/mol (7946.5231 without restraints) Performing minimization step: 2406. Total energy = 7949.3900 kcal/mol (7943.7729 without restraints) Performing minimization step: 2407. Total energy = 7946.6392 kcal/mol (7941.0232 without restraints) Performing minimization step: 2408. Total energy = 7943.8889 kcal/mol (7938.2739 without restraints) Performing minimization step: 2409. Total energy = 7941.1403 kcal/mol (7935.5265 without restraints) Performing minimization step: 2410. Total energy = 7938.3924 kcal/mol (7932.7796 without restraints) Performing minimization step: 2411. Total energy = 7935.6442 kcal/mol (7930.0326 without restraints) Performing minimization step: 2412. Total energy = 7932.8975 kcal/mol (7927.2869 without restraints) Performing minimization step: 2413. Total energy = 7930.1519 kcal/mol (7924.5424 without restraints) Performing minimization step: 2414. Total energy = 7927.4071 kcal/mol (7921.7988 without restraints) Performing minimization step: 2415. Total energy = 7924.6631 kcal/mol (7919.0558 without restraints) Performing minimization step: 2416. Total energy = 7921.9199 kcal/mol (7916.3137 without restraints) Performing minimization step: 2417. Total energy = 7919.1775 kcal/mol (7913.5727 without restraints) Performing minimization step: 2418. Total energy = 7916.4364 kcal/mol (7910.8324 without restraints) Performing minimization step: 2419. Total energy = 7913.6957 kcal/mol (7908.0928 without restraints) Performing minimization step: 2420. Total energy = 7910.9558 kcal/mol (7905.3539 without restraints) Performing minimization step: 2421. Total energy = 7908.2166 kcal/mol (7902.6159 without restraints) Performing minimization step: 2422. Total energy = 7905.4784 kcal/mol (7899.8790 without restraints) Performing minimization step: 2423. Total energy = 7902.7416 kcal/mol (7897.1430 without restraints) Performing minimization step: 2424. Total energy = 7900.0048 kcal/mol (7894.4072 without restraints) Performing minimization step: 2425. Total energy = 7897.2689 kcal/mol (7891.6724 without restraints) Performing minimization step: 2426. Total energy = 7894.5341 kcal/mol (7888.9389 without restraints) Performing minimization step: 2427. Total energy = 7891.8001 kcal/mol (7886.2059 without restraints) Performing minimization step: 2428. Total energy = 7889.0668 kcal/mol (7883.4737 without restraints) Performing minimization step: 2429. Total energy = 7886.3344 kcal/mol (7880.7424 without restraints) Performing minimization step: 2430. Total energy = 7883.6026 kcal/mol (7878.0116 without restraints) Performing minimization step: 2431. Total energy = 7880.8717 kcal/mol (7875.2817 without restraints) Performing minimization step: 2432. Total energy = 7878.1418 kcal/mol (7872.5530 without restraints) Performing minimization step: 2433. Total energy = 7875.4128 kcal/mol (7869.8252 without restraints) Performing minimization step: 2434. Total energy = 7872.6846 kcal/mol (7867.0980 without restraints) Performing minimization step: 2435. Total energy = 7869.9571 kcal/mol (7864.3715 without restraints) Performing minimization step: 2436. Total energy = 7867.2307 kcal/mol (7861.6462 without restraints) Performing minimization step: 2437. Total energy = 7864.5049 kcal/mol (7858.9214 without restraints) Performing minimization step: 2438. Total energy = 7861.7800 kcal/mol (7856.1977 without restraints) Performing minimization step: 2439. Total energy = 7859.0561 kcal/mol (7853.4748 without restraints) Performing minimization step: 2440. Total energy = 7856.3330 kcal/mol (7850.7528 without restraints) Performing minimization step: 2441. Total energy = 7853.6107 kcal/mol (7848.0316 without restraints) Performing minimization step: 2442. Total energy = 7850.8891 kcal/mol (7845.3110 without restraints) Performing minimization step: 2443. Total energy = 7848.1682 kcal/mol (7842.5913 without restraints) Performing minimization step: 2444. Total energy = 7845.4482 kcal/mol (7839.8722 without restraints) Performing minimization step: 2445. Total energy = 7842.7290 kcal/mol (7837.1542 without restraints) Performing minimization step: 2446. Total energy = 7840.0110 kcal/mol (7834.4376 without restraints) Performing minimization step: 2447. Total energy = 7837.2938 kcal/mol (7831.7211 without restraints) Performing minimization step: 2448. Total energy = 7834.5770 kcal/mol (7829.0054 without restraints) Performing minimization step: 2449. Total energy = 7831.8608 kcal/mol (7826.2902 without restraints) Performing minimization step: 2450. Total energy = 7829.1458 kcal/mol (7823.5763 without restraints) Performing minimization step: 2451. Total energy = 7826.4316 kcal/mol (7820.8631 without restraints) Performing minimization step: 2452. Total energy = 7823.7185 kcal/mol (7818.1512 without restraints) Performing minimization step: 2453. Total energy = 7821.0060 kcal/mol (7815.4398 without restraints) Performing minimization step: 2454. Total energy = 7818.2944 kcal/mol (7812.7292 without restraints) Performing minimization step: 2455. Total energy = 7815.5834 kcal/mol (7810.0192 without restraints) Performing minimization step: 2456. Total energy = 7812.8731 kcal/mol (7807.3097 without restraints) Performing minimization step: 2457. Total energy = 7810.1635 kcal/mol (7804.6013 without restraints) Performing minimization step: 2458. Total energy = 7807.4551 kcal/mol (7801.8941 without restraints) Performing minimization step: 2459. Total energy = 7804.7474 kcal/mol (7799.1875 without restraints) Performing minimization step: 2460. Total energy = 7802.0407 kcal/mol (7796.4818 without restraints) Performing minimization step: 2461. Total energy = 7799.3345 kcal/mol (7793.7767 without restraints) Performing minimization step: 2462. Total energy = 7796.6295 kcal/mol (7791.0729 without restraints) Performing minimization step: 2463. Total energy = 7793.9254 kcal/mol (7788.3698 without restraints) Performing minimization step: 2464. Total energy = 7791.2223 kcal/mol (7785.6677 without restraints) Performing minimization step: 2465. Total energy = 7788.5198 kcal/mol (7782.9663 without restraints) Performing minimization step: 2466. Total energy = 7785.8179 kcal/mol (7780.2654 without restraints) Performing minimization step: 2467. Total energy = 7783.1164 kcal/mol (7777.5649 without restraints) Performing minimization step: 2468. Total energy = 7780.4163 kcal/mol (7774.8659 without restraints) Performing minimization step: 2469. Total energy = 7777.7171 kcal/mol (7772.1677 without restraints) Performing minimization step: 2470. Total energy = 7775.0185 kcal/mol (7769.4702 without restraints) Performing minimization step: 2471. Total energy = 7772.3206 kcal/mol (7766.7734 without restraints) Performing minimization step: 2472. Total energy = 7769.6237 kcal/mol (7764.0775 without restraints) Performing minimization step: 2473. Total energy = 7766.9275 kcal/mol (7761.3825 without restraints) Performing minimization step: 2474. Total energy = 7764.2324 kcal/mol (7758.6883 without restraints) Performing minimization step: 2475. Total energy = 7761.5380 kcal/mol (7755.9950 without restraints) Performing minimization step: 2476. Total energy = 7758.8447 kcal/mol (7753.3026 without restraints) Performing minimization step: 2477. Total energy = 7756.1519 kcal/mol (7750.6110 without restraints) Performing minimization step: 2478. Total energy = 7753.4602 kcal/mol (7747.9203 without restraints) Performing minimization step: 2479. Total energy = 7750.7691 kcal/mol (7745.2302 without restraints) Performing minimization step: 2480. Total energy = 7748.0790 kcal/mol (7742.5412 without restraints) Performing minimization step: 2481. Total energy = 7745.3900 kcal/mol (7739.8533 without restraints) Performing minimization step: 2482. Total energy = 7742.7014 kcal/mol (7737.1657 without restraints) Performing minimization step: 2483. Total energy = 7740.0136 kcal/mol (7734.4789 without restraints) Performing minimization step: 2484. Total energy = 7737.3266 kcal/mol (7731.7929 without restraints) Performing minimization step: 2485. Total energy = 7734.6405 kcal/mol (7729.1079 without restraints) Performing minimization step: 2486. Total energy = 7731.9557 kcal/mol (7726.4242 without restraints) Performing minimization step: 2487. Total energy = 7729.2718 kcal/mol (7723.7414 without restraints) Performing minimization step: 2488. Total energy = 7726.5884 kcal/mol (7721.0589 without restraints) Performing minimization step: 2489. Total energy = 7723.9057 kcal/mol (7718.3774 without restraints) Performing minimization step: 2490. Total energy = 7721.2239 kcal/mol (7715.6965 without restraints) Performing minimization step: 2491. Total energy = 7718.5429 kcal/mol (7713.0166 without restraints) Performing minimization step: 2492. Total energy = 7715.8627 kcal/mol (7710.3374 without restraints) Performing minimization step: 2493. Total energy = 7713.1834 kcal/mol (7707.6592 without restraints) Performing minimization step: 2494. Total energy = 7710.5051 kcal/mol (7704.9818 without restraints) Performing minimization step: 2495. Total energy = 7707.8275 kcal/mol (7702.3053 without restraints) Performing minimization step: 2496. Total energy = 7705.1506 kcal/mol (7699.6295 without restraints) Performing minimization step: 2497. Total energy = 7702.4746 kcal/mol (7696.9544 without restraints) Performing minimization step: 2498. Total energy = 7699.7995 kcal/mol (7694.2804 without restraints) Performing minimization step: 2499. Total energy = 7697.1252 kcal/mol (7691.6071 without restraints) Performing minimization step: 2500. Total energy = 7694.4517 kcal/mol (7688.9347 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 7691.7791 kcal/mol (7686.2631 without restraints) Performing minimization step: 2502. Total energy = 7689.1072 kcal/mol (7683.5922 without restraints) Performing minimization step: 2503. Total energy = 7686.4366 kcal/mol (7680.9227 without restraints) Performing minimization step: 2504. Total energy = 7683.7669 kcal/mol (7678.2542 without restraints) Performing minimization step: 2505. Total energy = 7681.0981 kcal/mol (7675.5862 without restraints) Performing minimization step: 2506. Total energy = 7678.4296 kcal/mol (7672.9187 without restraints) Performing minimization step: 2507. Total energy = 7675.7620 kcal/mol (7670.2523 without restraints) Performing minimization step: 2508. Total energy = 7673.0957 kcal/mol (7667.5869 without restraints) Performing minimization step: 2509. Total energy = 7670.4300 kcal/mol (7664.9222 without restraints) Performing minimization step: 2510. Total energy = 7667.7646 kcal/mol (7662.2579 without restraints) Performing minimization step: 2511. Total energy = 7665.1004 kcal/mol (7659.5947 without restraints) Performing minimization step: 2512. Total energy = 7662.4368 kcal/mol (7656.9322 without restraints) Performing minimization step: 2513. Total energy = 7659.7743 kcal/mol (7654.2706 without restraints) Performing minimization step: 2514. Total energy = 7657.1121 kcal/mol (7651.6095 without restraints) Performing minimization step: 2515. Total energy = 7654.4514 kcal/mol (7648.9497 without restraints) Performing minimization step: 2516. Total energy = 7651.7913 kcal/mol (7646.2907 without restraints) Performing minimization step: 2517. Total energy = 7649.1321 kcal/mol (7643.6325 without restraints) Performing minimization step: 2518. Total energy = 7646.4738 kcal/mol (7640.9752 without restraints) Performing minimization step: 2519. Total energy = 7643.8164 kcal/mol (7638.3189 without restraints) Performing minimization step: 2520. Total energy = 7641.1598 kcal/mol (7635.6633 without restraints) Performing minimization step: 2521. Total energy = 7638.5041 kcal/mol (7633.0086 without restraints) Performing minimization step: 2522. Total energy = 7635.8494 kcal/mol (7630.3550 without restraints) Performing minimization step: 2523. Total energy = 7633.1954 kcal/mol (7627.7019 without restraints) Performing minimization step: 2524. Total energy = 7630.5420 kcal/mol (7625.0495 without restraints) Performing minimization step: 2525. Total energy = 7627.8896 kcal/mol (7622.3982 without restraints) Performing minimization step: 2526. Total energy = 7625.2384 kcal/mol (7619.7480 without restraints) Performing minimization step: 2527. Total energy = 7622.5879 kcal/mol (7617.0985 without restraints) Performing minimization step: 2528. Total energy = 7619.9378 kcal/mol (7614.4493 without restraints) Performing minimization step: 2529. Total energy = 7617.2892 kcal/mol (7611.8018 without restraints) Performing minimization step: 2530. Total energy = 7614.6409 kcal/mol (7609.1546 without restraints) Performing minimization step: 2531. Total energy = 7611.9937 kcal/mol (7606.5084 without restraints) Performing minimization step: 2532. Total energy = 7609.3469 kcal/mol (7603.8626 without restraints) Performing minimization step: 2533. Total energy = 7606.7019 kcal/mol (7601.2186 without restraints) Performing minimization step: 2534. Total energy = 7604.0570 kcal/mol (7598.5748 without restraints) Performing minimization step: 2535. Total energy = 7601.4133 kcal/mol (7595.9320 without restraints) Performing minimization step: 2536. Total energy = 7598.7702 kcal/mol (7593.2900 without restraints) Performing minimization step: 2537. Total energy = 7596.1283 kcal/mol (7590.6491 without restraints) Performing minimization step: 2538. Total energy = 7593.4872 kcal/mol (7588.0090 without restraints) Performing minimization step: 2539. Total energy = 7590.8472 kcal/mol (7585.3701 without restraints) Performing minimization step: 2540. Total energy = 7588.2079 kcal/mol (7582.7317 without restraints) Performing minimization step: 2541. Total energy = 7585.5695 kcal/mol (7580.0945 without restraints) Performing minimization step: 2542. Total energy = 7582.9323 kcal/mol (7577.4581 without restraints) Performing minimization step: 2543. Total energy = 7580.2953 kcal/mol (7574.8221 without restraints) Performing minimization step: 2544. Total energy = 7577.6595 kcal/mol (7572.1873 without restraints) Performing minimization step: 2545. Total energy = 7575.0245 kcal/mol (7569.5533 without restraints) Performing minimization step: 2546. Total energy = 7572.3905 kcal/mol (7566.9204 without restraints) Performing minimization step: 2547. Total energy = 7569.7574 kcal/mol (7564.2882 without restraints) Performing minimization step: 2548. Total energy = 7567.1248 kcal/mol (7561.6567 without restraints) Performing minimization step: 2549. Total energy = 7564.4935 kcal/mol (7559.0265 without restraints) Performing minimization step: 2550. Total energy = 7561.8640 kcal/mol (7556.3979 without restraints) Performing minimization step: 2551. Total energy = 7559.2344 kcal/mol (7553.7693 without restraints) Performing minimization step: 2552. Total energy = 7556.6060 kcal/mol (7551.1419 without restraints) Performing minimization step: 2553. Total energy = 7553.9780 kcal/mol (7548.5149 without restraints) Performing minimization step: 2554. Total energy = 7551.3509 kcal/mol (7545.8889 without restraints) Performing minimization step: 2555. Total energy = 7548.7250 kcal/mol (7543.2639 without restraints) Performing minimization step: 2556. Total energy = 7546.0997 kcal/mol (7540.6396 without restraints) Performing minimization step: 2557. Total energy = 7543.4755 kcal/mol (7538.0164 without restraints) Performing minimization step: 2558. Total energy = 7540.8524 kcal/mol (7535.3943 without restraints) Performing minimization step: 2559. Total energy = 7538.2298 kcal/mol (7532.7727 without restraints) Performing minimization step: 2560. Total energy = 7535.6081 kcal/mol (7530.1520 without restraints) Performing minimization step: 2561. Total energy = 7532.9881 kcal/mol (7527.5330 without restraints) Performing minimization step: 2562. Total energy = 7530.3682 kcal/mol (7524.9142 without restraints) Performing minimization step: 2563. Total energy = 7527.7492 kcal/mol (7522.2962 without restraints) Performing minimization step: 2564. Total energy = 7525.1316 kcal/mol (7519.6798 without restraints) Performing minimization step: 2565. Total energy = 7522.5149 kcal/mol (7517.0638 without restraints) Performing minimization step: 2566. Total energy = 7519.8986 kcal/mol (7514.4485 without restraints) Performing minimization step: 2567. Total energy = 7517.2836 kcal/mol (7511.8345 without restraints) Performing minimization step: 2568. Total energy = 7514.6694 kcal/mol (7509.2213 without restraints) Performing minimization step: 2569. Total energy = 7512.0554 kcal/mol (7506.6083 without restraints) Performing minimization step: 2570. Total energy = 7509.4427 kcal/mol (7503.9966 without restraints) Performing minimization step: 2571. Total energy = 7506.8311 kcal/mol (7501.3860 without restraints) Performing minimization step: 2572. Total energy = 7504.2202 kcal/mol (7498.7761 without restraints) Performing minimization step: 2573. Total energy = 7501.6106 kcal/mol (7496.1675 without restraints) Performing minimization step: 2574. Total energy = 7499.0017 kcal/mol (7493.5596 without restraints) Performing minimization step: 2575. Total energy = 7496.3932 kcal/mol (7490.9520 without restraints) Performing minimization step: 2576. Total energy = 7493.7859 kcal/mol (7488.3457 without restraints) Performing minimization step: 2577. Total energy = 7491.1796 kcal/mol (7485.7404 without restraints) Performing minimization step: 2578. Total energy = 7488.5739 kcal/mol (7483.1357 without restraints) Performing minimization step: 2579. Total energy = 7485.9699 kcal/mol (7480.5328 without restraints) Performing minimization step: 2580. Total energy = 7483.3667 kcal/mol (7477.9306 without restraints) Performing minimization step: 2581. Total energy = 7480.7643 kcal/mol (7475.3292 without restraints) Performing minimization step: 2582. Total energy = 7478.1625 kcal/mol (7472.7283 without restraints) Performing minimization step: 2583. Total energy = 7475.5620 kcal/mol (7470.1288 without restraints) Performing minimization step: 2584. Total energy = 7472.9623 kcal/mol (7467.5301 without restraints) Performing minimization step: 2585. Total energy = 7470.3634 kcal/mol (7464.9322 without restraints) Performing minimization step: 2586. Total energy = 7467.7658 kcal/mol (7462.3355 without restraints) Performing minimization step: 2587. Total energy = 7465.1684 kcal/mol (7459.7393 without restraints) Performing minimization step: 2588. Total energy = 7462.5725 kcal/mol (7457.1442 without restraints) Performing minimization step: 2589. Total energy = 7459.9773 kcal/mol (7454.5501 without restraints) Performing minimization step: 2590. Total energy = 7457.3831 kcal/mol (7451.9568 without restraints) Performing minimization step: 2591. Total energy = 7454.7899 kcal/mol (7449.3646 without restraints) Performing minimization step: 2592. Total energy = 7452.1974 kcal/mol (7446.7731 without restraints) Performing minimization step: 2593. Total energy = 7449.6059 kcal/mol (7444.1826 without restraints) Performing minimization step: 2594. Total energy = 7447.0155 kcal/mol (7441.5932 without restraints) Performing minimization step: 2595. Total energy = 7444.4258 kcal/mol (7439.0044 without restraints) Performing minimization step: 2596. Total energy = 7441.8369 kcal/mol (7436.4166 without restraints) Performing minimization step: 2597. Total energy = 7439.2491 kcal/mol (7433.8297 without restraints) Performing minimization step: 2598. Total energy = 7436.6622 kcal/mol (7431.2438 without restraints) Performing minimization step: 2599. Total energy = 7434.0766 kcal/mol (7428.6592 without restraints) Performing minimization step: 2600. Total energy = 7431.4917 kcal/mol (7426.0753 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 7428.9078 kcal/mol (7423.4925 without restraints) Performing minimization step: 2602. Total energy = 7426.3248 kcal/mol (7420.9103 without restraints) Performing minimization step: 2603. Total energy = 7423.7430 kcal/mol (7418.3296 without restraints) Performing minimization step: 2604. Total energy = 7421.1618 kcal/mol (7415.7493 without restraints) Performing minimization step: 2605. Total energy = 7418.5815 kcal/mol (7413.1700 without restraints) Performing minimization step: 2606. Total energy = 7416.0021 kcal/mol (7410.5915 without restraints) Performing minimization step: 2607. Total energy = 7413.4238 kcal/mol (7408.0144 without restraints) Performing minimization step: 2608. Total energy = 7410.8463 kcal/mol (7405.4374 without restraints) Performing minimization step: 2609. Total energy = 7408.2697 kcal/mol (7402.8621 without restraints) Performing minimization step: 2610. Total energy = 7405.6941 kcal/mol (7400.2875 without restraints) Performing minimization step: 2611. Total energy = 7403.1196 kcal/mol (7397.7140 without restraints) Performing minimization step: 2612. Total energy = 7400.5460 kcal/mol (7395.1413 without restraints) Performing minimization step: 2613. Total energy = 7397.9734 kcal/mol (7392.5697 without restraints) Performing minimization step: 2614. Total energy = 7395.4021 kcal/mol (7389.9996 without restraints) Performing minimization step: 2615. Total energy = 7392.8315 kcal/mol (7387.4298 without restraints) Performing minimization step: 2616. Total energy = 7390.2613 kcal/mol (7384.8605 without restraints) Performing minimization step: 2617. Total energy = 7387.6924 kcal/mol (7382.2926 without restraints) Performing minimization step: 2618. Total energy = 7385.1245 kcal/mol (7379.7257 without restraints) Performing minimization step: 2619. Total energy = 7382.5578 kcal/mol (7377.1600 without restraints) Performing minimization step: 2620. Total energy = 7379.9923 kcal/mol (7374.5955 without restraints) Performing minimization step: 2621. Total energy = 7377.4274 kcal/mol (7372.0315 without restraints) Performing minimization step: 2622. Total energy = 7374.8638 kcal/mol (7369.4689 without restraints) Performing minimization step: 2623. Total energy = 7372.3010 kcal/mol (7366.9070 without restraints) Performing minimization step: 2624. Total energy = 7369.7391 kcal/mol (7364.3463 without restraints) Performing minimization step: 2625. Total energy = 7367.1785 kcal/mol (7361.7865 without restraints) Performing minimization step: 2626. Total energy = 7364.6185 kcal/mol (7359.2276 without restraints) Performing minimization step: 2627. Total energy = 7362.0595 kcal/mol (7356.6694 without restraints) Performing minimization step: 2628. Total energy = 7359.5014 kcal/mol (7354.1122 without restraints) Performing minimization step: 2629. Total energy = 7356.9442 kcal/mol (7351.5561 without restraints) Performing minimization step: 2630. Total energy = 7354.3881 kcal/mol (7349.0010 without restraints) Performing minimization step: 2631. Total energy = 7351.8329 kcal/mol (7346.4468 without restraints) Performing minimization step: 2632. Total energy = 7349.2788 kcal/mol (7343.8938 without restraints) Performing minimization step: 2633. Total energy = 7346.7260 kcal/mol (7341.3418 without restraints) Performing minimization step: 2634. Total energy = 7344.1740 kcal/mol (7338.7908 without restraints) Performing minimization step: 2635. Total energy = 7341.6229 kcal/mol (7336.2407 without restraints) Performing minimization step: 2636. Total energy = 7339.0728 kcal/mol (7333.6915 without restraints) Performing minimization step: 2637. Total energy = 7336.5236 kcal/mol (7331.1432 without restraints) Performing minimization step: 2638. Total energy = 7333.9751 kcal/mol (7328.5957 without restraints) Performing minimization step: 2639. Total energy = 7331.4278 kcal/mol (7326.0494 without restraints) Performing minimization step: 2640. Total energy = 7328.8814 kcal/mol (7323.5040 without restraints) Performing minimization step: 2641. Total energy = 7326.3361 kcal/mol (7320.9596 without restraints) Performing minimization step: 2642. Total energy = 7323.7924 kcal/mol (7318.4169 without restraints) Performing minimization step: 2643. Total energy = 7321.2493 kcal/mol (7315.8747 without restraints) Performing minimization step: 2644. Total energy = 7318.7078 kcal/mol (7313.3342 without restraints) Performing minimization step: 2645. Total energy = 7316.1668 kcal/mol (7310.7943 without restraints) Performing minimization step: 2646. Total energy = 7313.6269 kcal/mol (7308.2553 without restraints) Performing minimization step: 2647. Total energy = 7311.0879 kcal/mol (7305.7173 without restraints) Performing minimization step: 2648. Total energy = 7308.5499 kcal/mol (7303.1802 without restraints) Performing minimization step: 2649. Total energy = 7306.0128 kcal/mol (7300.6441 without restraints) Performing minimization step: 2650. Total energy = 7303.4765 kcal/mol (7298.1088 without restraints) Performing minimization step: 2651. Total energy = 7300.9414 kcal/mol (7295.5747 without restraints) Performing minimization step: 2652. Total energy = 7298.4072 kcal/mol (7293.0414 without restraints) Performing minimization step: 2653. Total energy = 7295.8738 kcal/mol (7290.5088 without restraints) Performing minimization step: 2654. Total energy = 7293.3413 kcal/mol (7287.9774 without restraints) Performing minimization step: 2655. Total energy = 7290.8104 kcal/mol (7285.4475 without restraints) Performing minimization step: 2656. Total energy = 7288.2804 kcal/mol (7282.9186 without restraints) Performing minimization step: 2657. Total energy = 7285.7517 kcal/mol (7280.3907 without restraints) Performing minimization step: 2658. Total energy = 7283.2236 kcal/mol (7277.8635 without restraints) Performing minimization step: 2659. Total energy = 7280.6970 kcal/mol (7275.3380 without restraints) Performing minimization step: 2660. Total energy = 7278.1711 kcal/mol (7272.8130 without restraints) Performing minimization step: 2661. Total energy = 7275.6465 kcal/mol (7270.2894 without restraints) Performing minimization step: 2662. Total energy = 7273.1225 kcal/mol (7267.7663 without restraints) Performing minimization step: 2663. Total energy = 7270.5998 kcal/mol (7265.2446 without restraints) Performing minimization step: 2664. Total energy = 7268.0781 kcal/mol (7262.7239 without restraints) Performing minimization step: 2665. Total energy = 7265.5573 kcal/mol (7260.2039 without restraints) Performing minimization step: 2666. Total energy = 7263.0371 kcal/mol (7257.6848 without restraints) Performing minimization step: 2667. Total energy = 7260.5182 kcal/mol (7255.1668 without restraints) Performing minimization step: 2668. Total energy = 7258.0008 kcal/mol (7252.6504 without restraints) Performing minimization step: 2669. Total energy = 7255.4841 kcal/mol (7250.1346 without restraints) Performing minimization step: 2670. Total energy = 7252.9683 kcal/mol (7247.6198 without restraints) Performing minimization step: 2671. Total energy = 7250.4536 kcal/mol (7245.1061 without restraints) Performing minimization step: 2672. Total energy = 7247.9402 kcal/mol (7242.5936 without restraints) Performing minimization step: 2673. Total energy = 7245.4277 kcal/mol (7240.0821 without restraints) Performing minimization step: 2674. Total energy = 7242.9162 kcal/mol (7237.5715 without restraints) Performing minimization step: 2675. Total energy = 7240.4060 kcal/mol (7235.0623 without restraints) Performing minimization step: 2676. Total energy = 7237.8961 kcal/mol (7232.5533 without restraints) Performing minimization step: 2677. Total energy = 7235.3879 kcal/mol (7230.0462 without restraints) Performing minimization step: 2678. Total energy = 7232.8808 kcal/mol (7227.5400 without restraints) Performing minimization step: 2679. Total energy = 7230.3747 kcal/mol (7225.0348 without restraints) Performing minimization step: 2680. Total energy = 7227.8692 kcal/mol (7222.5303 without restraints) Performing minimization step: 2681. Total energy = 7225.3649 kcal/mol (7220.0269 without restraints) Performing minimization step: 2682. Total energy = 7222.8615 kcal/mol (7217.5243 without restraints) Performing minimization step: 2683. Total energy = 7220.3592 kcal/mol (7215.0232 without restraints) Performing minimization step: 2684. Total energy = 7217.8588 kcal/mol (7212.5237 without restraints) Performing minimization step: 2685. Total energy = 7215.3590 kcal/mol (7210.0248 without restraints) Performing minimization step: 2686. Total energy = 7212.8600 kcal/mol (7207.5268 without restraints) Performing minimization step: 2687. Total energy = 7210.3622 kcal/mol (7205.0299 without restraints) Performing minimization step: 2688. Total energy = 7207.8652 kcal/mol (7202.5339 without restraints) Performing minimization step: 2689. Total energy = 7205.3697 kcal/mol (7200.0393 without restraints) Performing minimization step: 2690. Total energy = 7202.8750 kcal/mol (7197.5456 without restraints) Performing minimization step: 2691. Total energy = 7200.3817 kcal/mol (7195.0533 without restraints) Performing minimization step: 2692. Total energy = 7197.8895 kcal/mol (7192.5620 without restraints) Performing minimization step: 2693. Total energy = 7195.3979 kcal/mol (7190.0712 without restraints) Performing minimization step: 2694. Total energy = 7192.9072 kcal/mol (7187.5815 without restraints) Performing minimization step: 2695. Total energy = 7190.4180 kcal/mol (7185.0934 without restraints) Performing minimization step: 2696. Total energy = 7187.9301 kcal/mol (7182.6064 without restraints) Performing minimization step: 2697. Total energy = 7185.4432 kcal/mol (7180.1204 without restraints) Performing minimization step: 2698. Total energy = 7182.9570 kcal/mol (7177.6352 without restraints) Performing minimization step: 2699. Total energy = 7180.4720 kcal/mol (7175.1512 without restraints) Performing minimization step: 2700. Total energy = 7177.9881 kcal/mol (7172.6682 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 7175.5054 kcal/mol (7170.1864 without restraints) Performing minimization step: 2702. Total energy = 7173.0238 kcal/mol (7167.7059 without restraints) Performing minimization step: 2703. Total energy = 7170.5430 kcal/mol (7165.2259 without restraints) Performing minimization step: 2704. Total energy = 7168.0636 kcal/mol (7162.7475 without restraints) Performing minimization step: 2705. Total energy = 7165.5853 kcal/mol (7160.2702 without restraints) Performing minimization step: 2706. Total energy = 7163.1079 kcal/mol (7157.7937 without restraints) Performing minimization step: 2707. Total energy = 7160.6316 kcal/mol (7155.3184 without restraints) Performing minimization step: 2708. Total energy = 7158.1568 kcal/mol (7152.8446 without restraints) Performing minimization step: 2709. Total energy = 7155.6829 kcal/mol (7150.3716 without restraints) Performing minimization step: 2710. Total energy = 7153.2104 kcal/mol (7147.9000 without restraints) Performing minimization step: 2711. Total energy = 7150.7385 kcal/mol (7145.4291 without restraints) Performing minimization step: 2712. Total energy = 7148.2675 kcal/mol (7142.9590 without restraints) Performing minimization step: 2713. Total energy = 7145.7979 kcal/mol (7140.4904 without restraints) Performing minimization step: 2714. Total energy = 7143.3295 kcal/mol (7138.0229 without restraints) Performing minimization step: 2715. Total energy = 7140.8621 kcal/mol (7135.5564 without restraints) Performing minimization step: 2716. Total energy = 7138.3957 kcal/mol (7133.0910 without restraints) Performing minimization step: 2717. Total energy = 7135.9308 kcal/mol (7130.6270 without restraints) Performing minimization step: 2718. Total energy = 7133.4667 kcal/mol (7128.1638 without restraints) Performing minimization step: 2719. Total energy = 7131.0038 kcal/mol (7125.7020 without restraints) Performing minimization step: 2720. Total energy = 7128.5421 kcal/mol (7123.2412 without restraints) Performing minimization step: 2721. Total energy = 7126.0812 kcal/mol (7120.7812 without restraints) Performing minimization step: 2722. Total energy = 7123.6215 kcal/mol (7118.3225 without restraints) Performing minimization step: 2723. Total energy = 7121.1632 kcal/mol (7115.8651 without restraints) Performing minimization step: 2724. Total energy = 7118.7058 kcal/mol (7113.4086 without restraints) Performing minimization step: 2725. Total energy = 7116.2496 kcal/mol (7110.9534 without restraints) Performing minimization step: 2726. Total energy = 7113.7945 kcal/mol (7108.4992 without restraints) Performing minimization step: 2727. Total energy = 7111.3406 kcal/mol (7106.0463 without restraints) Performing minimization step: 2728. Total energy = 7108.8881 kcal/mol (7103.5947 without restraints) Performing minimization step: 2729. Total energy = 7106.4363 kcal/mol (7101.1439 without restraints) Performing minimization step: 2730. Total energy = 7103.9857 kcal/mol (7098.6942 without restraints) Performing minimization step: 2731. Total energy = 7101.5363 kcal/mol (7096.2457 without restraints) Performing minimization step: 2732. Total energy = 7099.0879 kcal/mol (7093.7983 without restraints) Performing minimization step: 2733. Total energy = 7096.6409 kcal/mol (7091.3520 without restraints) Performing minimization step: 2734. Total energy = 7094.1945 kcal/mol (7088.9068 without restraints) Performing minimization step: 2735. Total energy = 7091.7496 kcal/mol (7086.4628 without restraints) Performing minimization step: 2736. Total energy = 7089.3057 kcal/mol (7084.0199 without restraints) Performing minimization step: 2737. Total energy = 7086.8636 kcal/mol (7081.5787 without restraints) Performing minimization step: 2738. Total energy = 7084.4222 kcal/mol (7079.1382 without restraints) Performing minimization step: 2739. Total energy = 7081.9819 kcal/mol (7076.6989 without restraints) Performing minimization step: 2740. Total energy = 7079.5430 kcal/mol (7074.2610 without restraints) Performing minimization step: 2741. Total energy = 7077.1058 kcal/mol (7071.8247 without restraints) Performing minimization step: 2742. Total energy = 7074.6688 kcal/mol (7069.3886 without restraints) Performing minimization step: 2743. Total energy = 7072.2329 kcal/mol (7066.9536 without restraints) Performing minimization step: 2744. Total energy = 7069.7985 kcal/mol (7064.5203 without restraints) Performing minimization step: 2745. Total energy = 7067.3651 kcal/mol (7062.0878 without restraints) Performing minimization step: 2746. Total energy = 7064.9333 kcal/mol (7059.6571 without restraints) Performing minimization step: 2747. Total energy = 7062.5024 kcal/mol (7057.2269 without restraints) Performing minimization step: 2748. Total energy = 7060.0722 kcal/mol (7054.7977 without restraints) Performing minimization step: 2749. Total energy = 7057.6433 kcal/mol (7052.3697 without restraints) Performing minimization step: 2750. Total energy = 7055.2155 kcal/mol (7049.9429 without restraints) Performing minimization step: 2751. Total energy = 7052.7890 kcal/mol (7047.5174 without restraints) Performing minimization step: 2752. Total energy = 7050.3637 kcal/mol (7045.0929 without restraints) Performing minimization step: 2753. Total energy = 7047.9399 kcal/mol (7042.6700 without restraints) Performing minimization step: 2754. Total energy = 7045.5166 kcal/mol (7040.2477 without restraints) Performing minimization step: 2755. Total energy = 7043.0949 kcal/mol (7037.8269 without restraints) Performing minimization step: 2756. Total energy = 7040.6738 kcal/mol (7035.4069 without restraints) Performing minimization step: 2757. Total energy = 7038.2543 kcal/mol (7032.9882 without restraints) Performing minimization step: 2758. Total energy = 7035.8359 kcal/mol (7030.5707 without restraints) Performing minimization step: 2759. Total energy = 7033.4186 kcal/mol (7028.1544 without restraints) Performing minimization step: 2760. Total energy = 7031.0030 kcal/mol (7025.7399 without restraints) Performing minimization step: 2761. Total energy = 7028.5887 kcal/mol (7023.3264 without restraints) Performing minimization step: 2762. Total energy = 7026.1752 kcal/mol (7020.9138 without restraints) Performing minimization step: 2763. Total energy = 7023.7627 kcal/mol (7018.5022 without restraints) Performing minimization step: 2764. Total energy = 7021.3513 kcal/mol (7016.0918 without restraints) Performing minimization step: 2765. Total energy = 7018.9411 kcal/mol (7013.6825 without restraints) Performing minimization step: 2766. Total energy = 7016.5321 kcal/mol (7011.2744 without restraints) Performing minimization step: 2767. Total energy = 7014.1244 kcal/mol (7008.8677 without restraints) Performing minimization step: 2768. Total energy = 7011.7177 kcal/mol (7006.4618 without restraints) Performing minimization step: 2769. Total energy = 7009.3124 kcal/mol (7004.0576 without restraints) Performing minimization step: 2770. Total energy = 7006.9082 kcal/mol (7001.6543 without restraints) Performing minimization step: 2771. Total energy = 7004.5051 kcal/mol (6999.2522 without restraints) Performing minimization step: 2772. Total energy = 7002.1034 kcal/mol (6996.8513 without restraints) Performing minimization step: 2773. Total energy = 6999.7032 kcal/mol (6994.4520 without restraints) Performing minimization step: 2774. Total energy = 6997.3037 kcal/mol (6992.0535 without restraints) Performing minimization step: 2775. Total energy = 6994.9056 kcal/mol (6989.6564 without restraints) Performing minimization step: 2776. Total energy = 6992.5087 kcal/mol (6987.2605 without restraints) Performing minimization step: 2777. Total energy = 6990.1133 kcal/mol (6984.8659 without restraints) Performing minimization step: 2778. Total energy = 6987.7185 kcal/mol (6982.4720 without restraints) Performing minimization step: 2779. Total energy = 6985.3252 kcal/mol (6980.0797 without restraints) Performing minimization step: 2780. Total energy = 6982.9330 kcal/mol (6977.6884 without restraints) Performing minimization step: 2781. Total energy = 6980.5420 kcal/mol (6975.2983 without restraints) Performing minimization step: 2782. Total energy = 6978.1524 kcal/mol (6972.9096 without restraints) Performing minimization step: 2783. Total energy = 6975.7638 kcal/mol (6970.5221 without restraints) Performing minimization step: 2784. Total energy = 6973.3769 kcal/mol (6968.1360 without restraints) Performing minimization step: 2785. Total energy = 6970.9906 kcal/mol (6965.7508 without restraints) Performing minimization step: 2786. Total energy = 6968.6058 kcal/mol (6963.3668 without restraints) Performing minimization step: 2787. Total energy = 6966.2221 kcal/mol (6960.9840 without restraints) Performing minimization step: 2788. Total energy = 6963.8396 kcal/mol (6958.6025 without restraints) Performing minimization step: 2789. Total energy = 6961.4586 kcal/mol (6956.2226 without restraints) Performing minimization step: 2790. Total energy = 6959.0786 kcal/mol (6953.8434 without restraints) Performing minimization step: 2791. Total energy = 6956.7000 kcal/mol (6951.4657 without restraints) Performing minimization step: 2792. Total energy = 6954.3225 kcal/mol (6949.0891 without restraints) Performing minimization step: 2793. Total energy = 6951.9463 kcal/mol (6946.7139 without restraints) Performing minimization step: 2794. Total energy = 6949.5712 kcal/mol (6944.3396 without restraints) Performing minimization step: 2795. Total energy = 6947.1970 kcal/mol (6941.9664 without restraints) Performing minimization step: 2796. Total energy = 6944.8243 kcal/mol (6939.5947 without restraints) Performing minimization step: 2797. Total energy = 6942.4530 kcal/mol (6937.2243 without restraints) Performing minimization step: 2798. Total energy = 6940.0831 kcal/mol (6934.8553 without restraints) Performing minimization step: 2799. Total energy = 6937.7143 kcal/mol (6932.4874 without restraints) Performing minimization step: 2800. Total energy = 6935.3466 kcal/mol (6930.1206 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 6932.9798 kcal/mol (6927.7548 without restraints) Performing minimization step: 2802. Total energy = 6930.6147 kcal/mol (6925.3907 without restraints) Performing minimization step: 2803. Total energy = 6928.2507 kcal/mol (6923.0276 without restraints) Performing minimization step: 2804. Total energy = 6925.8884 kcal/mol (6920.6661 without restraints) Performing minimization step: 2805. Total energy = 6923.5269 kcal/mol (6918.3055 without restraints) Performing minimization step: 2806. Total energy = 6921.1666 kcal/mol (6915.9462 without restraints) Performing minimization step: 2807. Total energy = 6918.8075 kcal/mol (6913.5881 without restraints) Performing minimization step: 2808. Total energy = 6916.4497 kcal/mol (6911.2312 without restraints) Performing minimization step: 2809. Total energy = 6914.0931 kcal/mol (6908.8756 without restraints) Performing minimization step: 2810. Total energy = 6911.7381 kcal/mol (6906.5215 without restraints) Performing minimization step: 2811. Total energy = 6909.3840 kcal/mol (6904.1683 without restraints) Performing minimization step: 2812. Total energy = 6907.0311 kcal/mol (6901.8163 without restraints) Performing minimization step: 2813. Total energy = 6904.6795 kcal/mol (6899.4657 without restraints) Performing minimization step: 2814. Total energy = 6902.3291 kcal/mol (6897.1161 without restraints) Performing minimization step: 2815. Total energy = 6899.9802 kcal/mol (6894.7682 without restraints) Performing minimization step: 2816. Total energy = 6897.6325 kcal/mol (6892.4215 without restraints) Performing minimization step: 2817. Total energy = 6895.2861 kcal/mol (6890.0760 without restraints) Performing minimization step: 2818. Total energy = 6892.9410 kcal/mol (6887.7318 without restraints) Performing minimization step: 2819. Total energy = 6890.5971 kcal/mol (6885.3889 without restraints) Performing minimization step: 2820. Total energy = 6888.2546 kcal/mol (6883.0472 without restraints) Performing minimization step: 2821. Total energy = 6885.9132 kcal/mol (6880.7068 without restraints) Performing minimization step: 2822. Total energy = 6883.5736 kcal/mol (6878.3681 without restraints) Performing minimization step: 2823. Total energy = 6881.2347 kcal/mol (6876.0300 without restraints) Performing minimization step: 2824. Total energy = 6878.8972 kcal/mol (6873.6936 without restraints) Performing minimization step: 2825. Total energy = 6876.5613 kcal/mol (6871.3587 without restraints) Performing minimization step: 2826. Total energy = 6874.2265 kcal/mol (6869.0248 without restraints) Performing minimization step: 2827. Total energy = 6871.8932 kcal/mol (6866.6925 without restraints) Performing minimization step: 2828. Total energy = 6869.5610 kcal/mol (6864.3611 without restraints) Performing minimization step: 2829. Total energy = 6867.2301 kcal/mol (6862.0311 without restraints) Performing minimization step: 2830. Total energy = 6864.8999 kcal/mol (6859.7018 without restraints) Performing minimization step: 2831. Total energy = 6862.5718 kcal/mol (6857.3748 without restraints) Performing minimization step: 2832. Total energy = 6860.2447 kcal/mol (6855.0485 without restraints) Performing minimization step: 2833. Total energy = 6857.9188 kcal/mol (6852.7235 without restraints) Performing minimization step: 2834. Total energy = 6855.5942 kcal/mol (6850.3999 without restraints) Performing minimization step: 2835. Total energy = 6853.2709 kcal/mol (6848.0774 without restraints) Performing minimization step: 2836. Total energy = 6850.9492 kcal/mol (6845.7567 without restraints) Performing minimization step: 2837. Total energy = 6848.6285 kcal/mol (6843.4370 without restraints) Performing minimization step: 2838. Total energy = 6846.3093 kcal/mol (6841.1187 without restraints) Performing minimization step: 2839. Total energy = 6843.9914 kcal/mol (6838.8016 without restraints) Performing minimization step: 2840. Total energy = 6841.6748 kcal/mol (6836.4860 without restraints) Performing minimization step: 2841. Total energy = 6839.3594 kcal/mol (6834.1715 without restraints) Performing minimization step: 2842. Total energy = 6837.0454 kcal/mol (6831.8583 without restraints) Performing minimization step: 2843. Total energy = 6834.7325 kcal/mol (6829.5464 without restraints) Performing minimization step: 2844. Total energy = 6832.4210 kcal/mol (6827.2359 without restraints) Performing minimization step: 2845. Total energy = 6830.1108 kcal/mol (6824.9266 without restraints) Performing minimization step: 2846. Total energy = 6827.8021 kcal/mol (6822.6189 without restraints) Performing minimization step: 2847. Total energy = 6825.4948 kcal/mol (6820.3125 without restraints) Performing minimization step: 2848. Total energy = 6823.1886 kcal/mol (6818.0072 without restraints) Performing minimization step: 2849. Total energy = 6820.8842 kcal/mol (6815.7038 without restraints) Performing minimization step: 2850. Total energy = 6818.5807 kcal/mol (6813.4012 without restraints) Performing minimization step: 2851. Total energy = 6816.2784 kcal/mol (6811.0998 without restraints) Performing minimization step: 2852. Total energy = 6813.9778 kcal/mol (6808.8000 without restraints) Performing minimization step: 2853. Total energy = 6811.6782 kcal/mol (6806.5014 without restraints) Performing minimization step: 2854. Total energy = 6809.3799 kcal/mol (6804.2041 without restraints) Performing minimization step: 2855. Total energy = 6807.0833 kcal/mol (6801.9085 without restraints) Performing minimization step: 2856. Total energy = 6804.7880 kcal/mol (6799.6141 without restraints) Performing minimization step: 2857. Total energy = 6802.4942 kcal/mol (6797.3212 without restraints) Performing minimization step: 2858. Total energy = 6800.2014 kcal/mol (6795.0293 without restraints) Performing minimization step: 2859. Total energy = 6797.9098 kcal/mol (6792.7385 without restraints) Performing minimization step: 2860. Total energy = 6795.6194 kcal/mol (6790.4490 without restraints) Performing minimization step: 2861. Total energy = 6793.3304 kcal/mol (6788.1611 without restraints) Performing minimization step: 2862. Total energy = 6791.0432 kcal/mol (6785.8747 without restraints) Performing minimization step: 2863. Total energy = 6788.7570 kcal/mol (6783.5893 without restraints) Performing minimization step: 2864. Total energy = 6786.4724 kcal/mol (6781.3058 without restraints) Performing minimization step: 2865. Total energy = 6784.1894 kcal/mol (6779.0237 without restraints) Performing minimization step: 2866. Total energy = 6781.9073 kcal/mol (6776.7425 without restraints) Performing minimization step: 2867. Total energy = 6779.6265 kcal/mol (6774.4627 without restraints) Performing minimization step: 2868. Total energy = 6777.3471 kcal/mol (6772.1843 without restraints) Performing minimization step: 2869. Total energy = 6775.0686 kcal/mol (6769.9067 without restraints) Performing minimization step: 2870. Total energy = 6772.7920 kcal/mol (6767.6310 without restraints) Performing minimization step: 2871. Total energy = 6770.5167 kcal/mol (6765.3566 without restraints) Performing minimization step: 2872. Total energy = 6768.2428 kcal/mol (6763.0836 without restraints) Performing minimization step: 2873. Total energy = 6765.9705 kcal/mol (6760.8122 without restraints) Performing minimization step: 2874. Total energy = 6763.6994 kcal/mol (6758.5422 without restraints) Performing minimization step: 2875. Total energy = 6761.4299 kcal/mol (6756.2736 without restraints) Performing minimization step: 2876. Total energy = 6759.1615 kcal/mol (6754.0060 without restraints) Performing minimization step: 2877. Total energy = 6756.8945 kcal/mol (6751.7400 without restraints) Performing minimization step: 2878. Total energy = 6754.6288 kcal/mol (6749.4752 without restraints) Performing minimization step: 2879. Total energy = 6752.3646 kcal/mol (6747.2119 without restraints) Performing minimization step: 2880. Total energy = 6750.1021 kcal/mol (6744.9507 without restraints) Performing minimization step: 2881. Total energy = 6747.8411 kcal/mol (6742.6902 without restraints) Performing minimization step: 2882. Total energy = 6745.5810 kcal/mol (6740.4310 without restraints) Performing minimization step: 2883. Total energy = 6743.3225 kcal/mol (6738.1735 without restraints) Performing minimization step: 2884. Total energy = 6741.0653 kcal/mol (6735.9172 without restraints) Performing minimization step: 2885. Total energy = 6738.8096 kcal/mol (6733.6624 without restraints) Performing minimization step: 2886. Total energy = 6736.5550 kcal/mol (6731.4088 without restraints) Performing minimization step: 2887. Total energy = 6734.3018 kcal/mol (6729.1565 without restraints) Performing minimization step: 2888. Total energy = 6732.0501 kcal/mol (6726.9058 without restraints) Performing minimization step: 2889. Total energy = 6729.7998 kcal/mol (6724.6564 without restraints) Performing minimization step: 2890. Total energy = 6727.5509 kcal/mol (6722.4084 without restraints) Performing minimization step: 2891. Total energy = 6725.3035 kcal/mol (6720.1619 without restraints) Performing minimization step: 2892. Total energy = 6723.0579 kcal/mol (6717.9173 without restraints) Performing minimization step: 2893. Total energy = 6720.8134 kcal/mol (6715.6737 without restraints) Performing minimization step: 2894. Total energy = 6718.5707 kcal/mol (6713.4317 without restraints) Performing minimization step: 2895. Total energy = 6716.3290 kcal/mol (6711.1911 without restraints) Performing minimization step: 2896. Total energy = 6714.0885 kcal/mol (6708.9516 without restraints) Performing minimization step: 2897. Total energy = 6711.8495 kcal/mol (6706.7134 without restraints) Performing minimization step: 2898. Total energy = 6709.6118 kcal/mol (6704.4767 without restraints) Performing minimization step: 2899. Total energy = 6707.3756 kcal/mol (6702.2414 without restraints) Performing minimization step: 2900. Total energy = 6705.1405 kcal/mol (6700.0072 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 6702.9072 kcal/mol (6697.7748 without restraints) Performing minimization step: 2902. Total energy = 6700.6753 kcal/mol (6695.5440 without restraints) Performing minimization step: 2903. Total energy = 6698.4454 kcal/mol (6693.3149 without restraints) Performing minimization step: 2904. Total energy = 6696.2161 kcal/mol (6691.0865 without restraints) Performing minimization step: 2905. Total energy = 6693.9883 kcal/mol (6688.8596 without restraints) Performing minimization step: 2906. Total energy = 6691.7621 kcal/mol (6686.6344 without restraints) Performing minimization step: 2907. Total energy = 6689.5374 kcal/mol (6684.4106 without restraints) Performing minimization step: 2908. Total energy = 6687.3143 kcal/mol (6682.1884 without restraints) Performing minimization step: 2909. Total energy = 6685.0924 kcal/mol (6679.9675 without restraints) Performing minimization step: 2910. Total energy = 6682.8717 kcal/mol (6677.7477 without restraints) Performing minimization step: 2911. Total energy = 6680.6527 kcal/mol (6675.5297 without restraints) Performing minimization step: 2912. Total energy = 6678.4351 kcal/mol (6673.3130 without restraints) Performing minimization step: 2913. Total energy = 6676.2190 kcal/mol (6671.0978 without restraints) Performing minimization step: 2914. Total energy = 6674.0044 kcal/mol (6668.8841 without restraints) Performing minimization step: 2915. Total energy = 6671.7915 kcal/mol (6666.6721 without restraints) Performing minimization step: 2916. Total energy = 6669.5798 kcal/mol (6664.4613 without restraints) Performing minimization step: 2917. Total energy = 6667.3697 kcal/mol (6662.2522 without restraints) Performing minimization step: 2918. Total energy = 6665.1608 kcal/mol (6660.0442 without restraints) Performing minimization step: 2919. Total energy = 6662.9534 kcal/mol (6657.8378 without restraints) Performing minimization step: 2920. Total energy = 6660.7474 kcal/mol (6655.6328 without restraints) Performing minimization step: 2921. Total energy = 6658.5431 kcal/mol (6653.4293 without restraints) Performing minimization step: 2922. Total energy = 6656.3409 kcal/mol (6651.2280 without restraints) Performing minimization step: 2923. Total energy = 6654.1395 kcal/mol (6649.0276 without restraints) Performing minimization step: 2924. Total energy = 6651.9398 kcal/mol (6646.8288 without restraints) Performing minimization step: 2925. Total energy = 6649.7413 kcal/mol (6644.6312 without restraints) Performing minimization step: 2926. Total energy = 6647.5442 kcal/mol (6642.4350 without restraints) Performing minimization step: 2927. Total energy = 6645.3488 kcal/mol (6640.2405 without restraints) Performing minimization step: 2928. Total energy = 6643.1547 kcal/mol (6638.0474 without restraints) Performing minimization step: 2929. Total energy = 6640.9620 kcal/mol (6635.8554 without restraints) Performing minimization step: 2930. Total energy = 6638.7708 kcal/mol (6633.6655 without restraints) Performing minimization step: 2931. Total energy = 6636.5813 kcal/mol (6631.4767 without restraints) Performing minimization step: 2932. Total energy = 6634.3931 kcal/mol (6629.2895 without restraints) Performing minimization step: 2933. Total energy = 6632.2068 kcal/mol (6627.1041 without restraints) Performing minimization step: 2934. Total energy = 6630.0215 kcal/mol (6624.9196 without restraints) Performing minimization step: 2935. Total energy = 6627.8377 kcal/mol (6622.7368 without restraints) Performing minimization step: 2936. Total energy = 6625.6555 kcal/mol (6620.5556 without restraints) Performing minimization step: 2937. Total energy = 6623.4747 kcal/mol (6618.3758 without restraints) Performing minimization step: 2938. Total energy = 6621.2955 kcal/mol (6616.1974 without restraints) Performing minimization step: 2939. Total energy = 6619.1180 kcal/mol (6614.0209 without restraints) Performing minimization step: 2940. Total energy = 6616.9419 kcal/mol (6611.8457 without restraints) Performing minimization step: 2941. Total energy = 6614.7677 kcal/mol (6609.6726 without restraints) Performing minimization step: 2942. Total energy = 6612.5947 kcal/mol (6607.5003 without restraints) Performing minimization step: 2943. Total energy = 6610.4230 kcal/mol (6605.3296 without restraints) Performing minimization step: 2944. Total energy = 6608.2528 kcal/mol (6603.1604 without restraints) Performing minimization step: 2945. Total energy = 6606.0839 kcal/mol (6600.9925 without restraints) Performing minimization step: 2946. Total energy = 6603.9172 kcal/mol (6598.8266 without restraints) Performing minimization step: 2947. Total energy = 6601.7516 kcal/mol (6596.6619 without restraints) Performing minimization step: 2948. Total energy = 6599.5875 kcal/mol (6594.4988 without restraints) Performing minimization step: 2949. Total energy = 6597.4249 kcal/mol (6592.3371 without restraints) Performing minimization step: 2950. Total energy = 6595.2639 kcal/mol (6590.1770 without restraints) Performing minimization step: 2951. Total energy = 6593.1048 kcal/mol (6588.0188 without restraints) Performing minimization step: 2952. Total energy = 6590.9469 kcal/mol (6585.8618 without restraints) Performing minimization step: 2953. Total energy = 6588.7907 kcal/mol (6583.7066 without restraints) Performing minimization step: 2954. Total energy = 6586.6359 kcal/mol (6581.5527 without restraints) Performing minimization step: 2955. Total energy = 6584.4823 kcal/mol (6579.4000 without restraints) Performing minimization step: 2956. Total energy = 6582.3305 kcal/mol (6577.2491 without restraints) Performing minimization step: 2957. Total energy = 6580.1804 kcal/mol (6575.1000 without restraints) Performing minimization step: 2958. Total energy = 6578.0318 kcal/mol (6572.9524 without restraints) Performing minimization step: 2959. Total energy = 6575.8847 kcal/mol (6570.8061 without restraints) Performing minimization step: 2960. Total energy = 6573.7393 kcal/mol (6568.6617 without restraints) Performing minimization step: 2961. Total energy = 6571.5957 kcal/mol (6566.5190 without restraints) Performing minimization step: 2962. Total energy = 6569.4533 kcal/mol (6564.3776 without restraints) Performing minimization step: 2963. Total energy = 6567.3123 kcal/mol (6562.2374 without restraints) Performing minimization step: 2964. Total energy = 6565.1723 kcal/mol (6560.0984 without restraints) Performing minimization step: 2965. Total energy = 6563.0343 kcal/mol (6557.9613 without restraints) Performing minimization step: 2966. Total energy = 6560.8979 kcal/mol (6555.8259 without restraints) Performing minimization step: 2967. Total energy = 6558.7630 kcal/mol (6553.6919 without restraints) Performing minimization step: 2968. Total energy = 6556.6299 kcal/mol (6551.5597 without restraints) Performing minimization step: 2969. Total energy = 6554.4979 kcal/mol (6549.4286 without restraints) Performing minimization step: 2970. Total energy = 6552.3681 kcal/mol (6547.2998 without restraints) Performing minimization step: 2971. Total energy = 6550.2394 kcal/mol (6545.1720 without restraints) Performing minimization step: 2972. Total energy = 6548.1125 kcal/mol (6543.0461 without restraints) Performing minimization step: 2973. Total energy = 6545.9872 kcal/mol (6540.9216 without restraints) Performing minimization step: 2974. Total energy = 6543.8632 kcal/mol (6538.7986 without restraints) Performing minimization step: 2975. Total energy = 6541.7412 kcal/mol (6536.6775 without restraints) Performing minimization step: 2976. Total energy = 6539.6206 kcal/mol (6534.5578 without restraints) Performing minimization step: 2977. Total energy = 6537.5018 kcal/mol (6532.4401 without restraints) Performing minimization step: 2978. Total energy = 6535.3844 kcal/mol (6530.3235 without restraints) Performing minimization step: 2979. Total energy = 6533.2689 kcal/mol (6528.2090 without restraints) Performing minimization step: 2980. Total energy = 6531.1546 kcal/mol (6526.0956 without restraints) Performing minimization step: 2981. Total energy = 6529.0419 kcal/mol (6523.9838 without restraints) Performing minimization step: 2982. Total energy = 6526.9308 kcal/mol (6521.8737 without restraints) Performing minimization step: 2983. Total energy = 6524.8213 kcal/mol (6519.7651 without restraints) Performing minimization step: 2984. Total energy = 6522.7136 kcal/mol (6517.6583 without restraints) Performing minimization step: 2985. Total energy = 6520.6073 kcal/mol (6515.5529 without restraints) Performing minimization step: 2986. Total energy = 6518.5022 kcal/mol (6513.4488 without restraints) Performing minimization step: 2987. Total energy = 6516.3990 kcal/mol (6511.3465 without restraints) Performing minimization step: 2988. Total energy = 6514.2974 kcal/mol (6509.2459 without restraints) Performing minimization step: 2989. Total energy = 6512.1978 kcal/mol (6507.1475 without restraints) Performing minimization step: 2990. Total energy = 6510.0999 kcal/mol (6505.0502 without restraints) Performing minimization step: 2991. Total energy = 6508.0031 kcal/mol (6502.9544 without restraints) Performing minimization step: 2992. Total energy = 6505.9080 kcal/mol (6500.8601 without restraints) Performing minimization step: 2993. Total energy = 6503.8142 kcal/mol (6498.7673 without restraints) Performing minimization step: 2994. Total energy = 6501.7222 kcal/mol (6496.6763 without restraints) Performing minimization step: 2995. Total energy = 6499.6320 kcal/mol (6494.5869 without restraints) Performing minimization step: 2996. Total energy = 6497.5437 kcal/mol (6492.4998 without restraints) Performing minimization step: 2997. Total energy = 6495.4568 kcal/mol (6490.4137 without restraints) Performing minimization step: 2998. Total energy = 6493.3713 kcal/mol (6488.3291 without restraints) Performing minimization step: 2999. Total energy = 6491.2876 kcal/mol (6486.2463 without restraints) Performing minimization step: 3000. Total energy = 6489.2055 kcal/mol (6484.1651 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/c3582fae/tmp/C15MA2_refx/C15MA2_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 6487.1250 kcal/mol (6482.0856 without restraints) Performing minimization step: 3002. Total energy = 6485.0460 kcal/mol (6480.0076 without restraints) Performing minimization step: 3003. Total energy = 6482.9690 kcal/mol (6477.9314 without restraints) Performing minimization step: 3004. Total energy = 6480.8930 kcal/mol (6475.8566 without restraints) Performing minimization step: 3005. Total energy = 6478.8194 kcal/mol (6473.7836 without restraints) Performing minimization step: 3006. Total energy = 6476.7470 kcal/mol (6471.7122 without restraints) Performing minimization step: 3007. Total energy = 6474.6763 kcal/mol (6469.6425 without restraints) Performing minimization step: 3008. Total energy = 6472.6074 kcal/mol (6467.5745 without restraints) Performing minimization step: 3009. Total energy = 6470.5398 kcal/mol (6465.5079 without restraints) Performing minimization step: 3010. Total energy = 6468.4739 kcal/mol (6463.4429 without restraints) Performing minimization step: 3011. Total energy = 6466.4096 kcal/mol (6461.3796 without restraints) Performing minimization step: 3012. Total energy = 6464.3472 kcal/mol (6459.3180 without restraints) Performing minimization step: 3013. Total energy = 6462.2863 kcal/mol (6457.2581 without restraints) Performing minimization step: 3014. Total energy = 6460.2269 kcal/mol (6455.1998 without restraints) Performing minimization step: 3015. Total energy = 6458.1696 kcal/mol (6453.1434 without restraints) Performing minimization step: 3016. Total energy = 6456.1137 kcal/mol (6451.0884 without restraints) Performing minimization step: 3017. Total energy = 6454.0593 kcal/mol (6449.0350 without restraints) Performing minimization step: 3018. Total energy = 6452.0069 kcal/mol (6446.9834 without restraints) Performing minimization step: 3019. Total energy = 6449.9557 kcal/mol (6444.9331 without restraints) Performing minimization step: 3020. Total energy = 6447.9066 kcal/mol (6442.8849 without restraints) Performing minimization step: 3021. Total energy = 6445.8587 kcal/mol (6440.8380 without restraints) Performing minimization step: 3022. Total energy = 6443.8127 kcal/mol (6438.7929 without restraints) Performing minimization step: 3023. Total energy = 6441.7684 kcal/mol (6436.7495 without restraints) Performing minimization step: 3024. Total energy = 6439.7259 kcal/mol (6434.7080 without restraints) Performing minimization step: 3025. Total energy = 6437.6847 kcal/mol (6432.6678 without restraints) Performing minimization step: 3026. Total energy = 6435.6456 kcal/mol (6430.6296 without restraints) Performing minimization step: 3027. Total energy = 6433.6080 kcal/mol (6428.5931 without restraints) Performing minimization step: 3028. Total energy = 6431.5720 kcal/mol (6426.5577 without restraints) Performing minimization step: 3029. Total energy = 6429.5375 kcal/mol (6424.5244 without restraints) Performing minimization step: 3030. Total energy = 6427.5049 kcal/mol (6422.4926 without restraints) Performing minimization step: 3031. Total energy = 6425.4741 kcal/mol (6420.4627 without restraints) Performing minimization step: 3032. Total energy = 6423.4447 kcal/mol (6418.4343 without restraints) Performing minimization step: 3033. Total energy = 6421.4170 kcal/mol (6416.4075 without restraints) Performing minimization step: 3034. Total energy = 6419.3909 kcal/mol (6414.3824 without restraints) Performing minimization step: 3035. Total energy = 6417.3668 kcal/mol (6412.3592 without restraints) Performing minimization step: 3036. Total energy = 6415.3440 kcal/mol (6410.3374 without restraints) Performing minimization step: 3037. Total energy = 6413.3233 kcal/mol (6408.3175 without restraints) Performing minimization step: 3038. Total energy = 6411.3038 kcal/mol (6406.2990 without restraints) Performing minimization step: 3039. Total energy = 6409.2864 kcal/mol (6404.2825 without restraints) Performing minimization step: 3040. Total energy = 6407.2711 kcal/mol (6402.2684 without restraints) Performing minimization step: 3041. Total energy = 6405.2571 kcal/mol (6400.2551 without restraints) Performing minimization step: 3042. Total energy = 6403.2446 kcal/mol (6398.2436 without restraints) Performing minimization step: 3043. Total energy = 6401.2339 kcal/mol (6396.2338 without restraints) Performing minimization step: 3044. Total energy = 6399.2249 kcal/mol (6394.2257 without restraints) Performing minimization step: 3045. Total energy = 6397.2174 kcal/mol (6392.2192 without restraints) Performing minimization step: 3046. Total energy = 6395.2116 kcal/mol (6390.2142 without restraints) Performing minimization step: 3047. Total energy = 6393.2076 kcal/mol (6388.2113 without restraints) Performing minimization step: 3048. Total energy = 6391.2052 kcal/mol (6386.2098 without restraints) Performing minimization step: 3049. Total energy = 6389.2049 kcal/mol (6384.2104 without restraints) Performing minimization step: 3050. Total energy = 6387.2059 kcal/mol (6382.2124 without restraints) Performing minimization step: 3051. Total energy = 6385.2088 kcal/mol (6380.2162 without restraints) Performing minimization step: 3052. Total energy = 6383.2132 kcal/mol (6378.2216 without restraints) Performing minimization step: 3053. Total energy = 6381.2193 kcal/mol (6376.2287 without restraints) Performing minimization step: 3054. Total energy = 6379.2272 kcal/mol (6374.2374 without restraints) Performing minimization step: 3055. Total energy = 6377.2370 kcal/mol (6372.2482 without restraints) Performing minimization step: 3056. Total energy = 6375.2484 kcal/mol (6370.2605 without restraints) Performing minimization step: 3057. Total energy = 6373.2618 kcal/mol (6368.2748 without restraints) Performing minimization step: 3058. Total energy = 6371.2765 kcal/mol (6366.2905 without restraints) Performing minimization step: 3059. Total energy = 6369.2932 kcal/mol (6364.3081 without restraints) Performing minimization step: 3060. Total energy = 6367.3113 kcal/mol (6362.3272 without restraints) Performing minimization step: 3061. Total energy = 6365.3312 kcal/mol (6360.3481 without restraints) Performing minimization step: 3062. Total energy = 6363.3529 kcal/mol (6358.3707 without restraints) Performing minimization step: 3063. Total energy = 6361.3759 kcal/mol (6356.3946 without restraints) Performing minimization step: 3064. Total energy = 6359.4011 kcal/mol (6354.4207 without restraints) Performing minimization step: 3065. Total energy = 6357.4282 kcal/mol (6352.4488 without restraints) Performing minimization step: 3066. Total energy = 6355.4567 kcal/mol (6350.4784 without restraints) Performing minimization step: 3067. Total energy = 6353.4868 kcal/mol (6348.5093 without restraints) Performing minimization step: 3068. Total energy = 6351.5190 kcal/mol (6346.5425 without restraints) Performing minimization step: 3069. Total energy = 6349.5526 kcal/mol (6344.5770 without restraints) Performing minimization step: 3070. Total energy = 6347.5882 kcal/mol (6342.6135 without restraints) Performing minimization step: 3071. Total energy = 6345.6255 kcal/mol (6340.6517 without restraints) Performing minimization step: 3072. Total energy = 6343.6643 kcal/mol (6338.6915 without restraints) Performing minimization step: 3073. Total energy = 6341.7048 kcal/mol (6336.7329 without restraints) Performing minimization step: 3074. Total energy = 6339.7476 kcal/mol (6334.7767 without restraints) Performing minimization step: 3075. Total energy = 6337.7922 kcal/mol (6332.8222 without restraints) Performing minimization step: 3076. Total energy = 6335.8380 kcal/mol (6330.8690 without restraints) Performing minimization step: 3077. Total energy = 6333.8856 kcal/mol (6328.9176 without restraints) Performing minimization step: 3078. Total energy = 6331.9348 kcal/mol (6326.9677 without restraints) Performing minimization step: 3079. Total energy = 6329.9858 kcal/mol (6325.0197 without restraints) Performing minimization step: 3080. Total energy = 6328.0383 kcal/mol (6323.0731 without restraints) Performing minimization step: 3081. Total energy = 6326.0926 kcal/mol (6321.1284 without restraints) Performing minimization step: 3082. Total energy = 6324.1488 kcal/mol (6319.1855 without restraints) Performing minimization step: 3083. Total energy = 6322.2069 kcal/mol (6317.2445 without restraints) Performing minimization step: 3084. Total energy = 6320.2664 kcal/mol (6315.3049 without restraints) Performing minimization step: 3085. Total energy = 6318.3277 kcal/mol (6313.3672 without restraints) Performing minimization step: 3086. Total energy = 6316.3908 kcal/mol (6311.4313 without restraints) Performing minimization step: 3087. Total energy = 6314.4559 kcal/mol (6309.4973 without restraints) Performing minimization step: 3088. Total energy = 6312.5225 kcal/mol (6307.5648 without restraints) Performing minimization step: 3089. Total energy = 6310.5910 kcal/mol (6305.6342 without restraints) Performing minimization step: 3090. Total energy = 6308.6617 kcal/mol (6303.7061 without restraints) Performing minimization step: 3091. Total energy = 6306.7341 kcal/mol (6301.7792 without restraints) Performing minimization step: 3092. Total energy = 6304.8079 kcal/mol (6299.8541 without restraints) Performing minimization step: 3093. Killed /home/ubuntu/rna-tools//opt/qrnas/ Save to C15MA2_refx.pdb DONE!