==> 3_ContextFold_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Tue Jan 27 18:35:39 2026
REMARK 250 Fixed atoms/residues:
REMARK 250  - add OP3 at the beginning of the chain  in chain: A <Residue G het=  resseq=1 icode= > residue # 1
ATOM      1  P     G A   1       2.915  -1.777  -1.808  1.00 11.89           P  
ATOM      2  OP1   G A   1       3.399  -0.641  -2.630  1.00 14.35           O  
ATOM      3  OP2   G A   1       3.687  -3.028  -1.733  1.00 12.68           O  
ATOM      4  O5'   G A   1       2.668  -1.323  -0.307  1.00 10.34           O  

==> 3_RNAstructure_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Tue Jan 27 18:35:39 2026
REMARK 250 Fixed atoms/residues:
REMARK 250  - add OP3 at the beginning of the chain  in chain: A <Residue G het=  resseq=1 icode= > residue # 1
ATOM      1  P     G A   1       4.021  -0.339  -2.034  1.00 11.89           P  
ATOM      2  OP1   G A   1       3.304   0.454  -3.061  1.00 14.35           O  
ATOM      3  OP2   G A   1       5.486  -0.256  -1.912  1.00 12.68           O  
ATOM      4  O5'   G A   1       3.443  -0.041  -0.585  1.00 10.34           O  

==> seq3centroid-b62e777c_sim_minE_TOTAL-000001_AA_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Tue Jan 27 18:35:40 2026
ATOM      1  P     G A   1      93.938  29.873  45.293  1.00  0.00           P  
ATOM      2  OP1   G A   1      95.078  30.817  45.281  1.00  0.00           O  
ATOM      3  OP2   G A   1      93.680  28.997  46.458  1.00  0.00           O  
ATOM      4  O5'   G A   1      92.583  30.713  45.163  1.00  0.00           O  
ATOM      5  C5'   G A   1      92.527  31.902  44.387  1.00  0.00           C  
ATOM      6  C4'   G A   1      91.148  32.087  43.805  1.00  0.00           C  

==> seq3consH-76004e2e_sim_minE_TOTAL-000001_AA_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Tue Jan 27 18:35:41 2026
ATOM      1  P     G A   1      -2.351  -6.923 -11.040  1.00  0.00           P  
ATOM      2  OP1   G A   1      -2.407  -6.190 -12.327  1.00  0.00           O  
ATOM      3  OP2   G A   1      -1.203  -6.712 -10.127  1.00  0.00           O  
ATOM      4  O5'   G A   1      -3.648  -6.600 -10.151  1.00  0.00           O  
ATOM      5  C5'   G A   1      -3.849  -5.402  -9.414  1.00  0.00           C  
ATOM      6  C4'   G A   1      -4.773  -5.635  -8.243  1.00  0.00           C  

==> seq3rossoft-1764027e_sim_minE_TOTAL-000001_AA_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Tue Jan 27 18:35:42 2026
ATOM      1  P     G A   1     -23.231 -35.294 -47.409  1.00 32.88           P  
ATOM      2  OP1   G A   1     -22.981 -36.587 -46.730  1.00 32.88           O  
ATOM      3  OP2   G A   1     -22.629 -34.046 -46.888  1.00 32.88           O  
ATOM      4  O5'   G A   1     -22.810 -35.432 -48.937  1.00 32.88           O  
ATOM      5  C5'   G A   1     -23.093 -36.615 -49.674  1.00 32.88           C  
ATOM      6  C4'   G A   1     -22.518 -36.492 -51.061  1.00 32.88           C  
DONE!