============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4.pdb ============================================================================= Error: recognition of atom ATOM 19 'H5' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 20 'HO5 DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 24 1H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 25 2H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 47 C5M DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 51 HN3 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 52 1HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 53 2HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 54 3HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 81 'H5' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 85 1H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 86 2H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 114 'H5' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 118 1H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 119 2H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 144 'H5' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 148 1H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 149 2H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 176 'H5' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 180 1H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 181 2H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 203 C5M DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 207 HN3 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 208 1HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 209 2HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 210 3HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 238 'H5' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 242 1H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 243 2H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 270 'H5' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 274 1H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 275 2H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 302 'H5' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 306 1H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 307 2H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 329 C5M DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 333 HN3 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 334 1HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 335 2HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 336 3HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 358 C5M DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 362 HN3 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 363 1HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 364 2HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 365 3HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 390 'H5' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 394 1H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 395 2H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 420 'H5' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 424 1H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 425 2H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 450 'H5' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 454 1H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 455 2H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 483 'H5' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 487 1H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 488 2H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 515 'H5' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 519 1H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 520 2H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 547 'H5' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 551 1H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 552 2H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 580 'H5' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 584 1H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 585 2H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 612 'H5' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 616 1H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 617 2H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 642 'H5' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 646 1H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 647 2H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 675 'H5' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 679 1H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 680 2H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 705 'H5' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 709 1H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 710 2H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 735 'H5' DC A 24 ... failed. Atom erased. Error: recognition of atom ATOM 739 1H2' DC A 24 ... failed. Atom erased. Error: recognition of atom ATOM 740 2H2' DC A 24 ... failed. Atom erased. Error: recognition of atom ATOM 768 'H5' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 772 1H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 773 2H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 800 'H5' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 804 1H2' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 805 2H2' DA A 26 ... failed. Atom erased. Error: recognition of atom ATOM 830 'H5' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 834 1H2' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 835 2H2' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 860 'H5' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 864 1H2' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 865 2H2' DC A 28 ... failed. Atom erased. Error: recognition of atom ATOM 890 'H5' DC A 29 ... failed. Atom erased. Error: recognition of atom ATOM 894 1H2' DC A 29 ... failed. Atom erased. Error: recognition of atom ATOM 895 2H2' DC A 29 ... failed. Atom erased. Error: recognition of atom ATOM 922 'H5' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 926 1H2' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 927 2H2' DA A 30 ... failed. Atom erased. Error: recognition of atom ATOM 949 C5M DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 953 HN3 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 954 1HM5 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 955 2HM5 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 956 3HM5 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 983 'H5' DA A 32 ... failed. Atom erased. Error: recognition of atom ATOM 987 1H2' DA A 32 ... failed. Atom erased. Error: recognition of atom ATOM 988 2H2' DA A 32 ... failed. Atom erased. Error: recognition of atom ATOM 1015 'H5' DA A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1019 1H2' DA A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1020 2H2' DA A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1042 C5M DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1046 HN3 DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1047 1HM5 DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1048 2HM5 DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1049 3HM5 DT A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1074 'H5' DC A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1078 1H2' DC A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1079 2H2' DC A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1106 'H5' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1110 1H2' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1111 2H2' DA A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1138 'H5' DA A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1142 1H2' DA A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1143 2H2' DA A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1168 'H5' DC A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1172 1H2' DC A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1173 2H2' DC A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1201 'H5' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1205 1H2' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1206 2H2' DG A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1231 'H5' DC A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1235 1H2' DC A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1236 2H2' DC A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1258 C5M DT A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1262 HN3 DT A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1263 1HM5 DT A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1264 2HM5 DT A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1265 3HM5 DT A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1293 'H5' DG A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1297 1H2' DG A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1298 2H2' DG A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1326 'H5' DG A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1330 1H2' DG A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1331 2H2' DG A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1359 'H5' DG A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1363 1H2' DG A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1364 2H2' DG A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1386 C5M DT A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1390 HN3 DT A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1391 1HM5 DT A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1392 2HM5 DT A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1393 3HM5 DT A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1420 'H5' DA A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1424 1H2' DA A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1425 2H2' DA A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1452 'H5' DA A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1456 1H2' DA A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1457 2H2' DA A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1485 'H5' DG A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1489 1H2' DG A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1490 2H2' DG A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1515 'H5' DC A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1519 1H2' DC A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1520 2H2' DC A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1542 C5M DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1546 HN3 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1547 1HM5 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1548 2HM5 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1549 3HM5 DT A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1574 'H5' DC A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1578 1H2' DC A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1579 2H2' DC A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1601 C5M DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1605 HN3 DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1606 1HM5 DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1607 2HM5 DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1608 3HM5 DT A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1636 'H5' DG A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1640 1H2' DG A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1641 2H2' DG A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1669 'H5' DG A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1673 1H2' DG A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1674 2H2' DG A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1701 'H5' DA A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1705 1H2' DA A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1706 2H2' DA A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1734 'H5' DG A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1738 1H2' DG A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1739 2H2' DG A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1761 C5M DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1765 HN3 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1766 1HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1767 2HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1768 3HM5 DT A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1796 'H5' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1800 1H2' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1801 2H2' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1823 C5M DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1827 HN3 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1828 1HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1829 2HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1830 3HM5 DT A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1852 C5M DT A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1856 HN3 DT A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1857 1HM5 DT A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1858 2HM5 DT A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1859 3HM5 DT A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1887 'H5' DG A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1891 1H2' DG A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1892 2H2' DG A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1914 C5M DT A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1918 HN3 DT A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1919 1HM5 DT A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1920 2HM5 DT A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1921 3HM5 DT A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1946 'H5' DC A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1950 1H2' DC A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1951 2H2' DC A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1979 'H5' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1983 1H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1984 2H2' DG A 64 ... failed. Atom erased. Error: recognition of atom ATOM 2011 'H5' DA A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2015 1H2' DA A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2016 2H2' DA A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2041 'H5' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2045 1H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2046 2H2' DC A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2074 'H5' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2078 1H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2079 2H2' DG A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2106 'H5' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2110 1H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2111 2H2' DA A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2139 'H5' DG A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2143 1H2' DG A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2144 2H2' DG A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2172 'H5' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2176 1H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2177 2H2' DG A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2199 C5M DT A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2203 HN3 DT A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2204 1HM5 DT A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2205 2HM5 DT A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2206 3HM5 DT A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2231 'H5' DC A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2235 1H2' DC A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2236 2H2' DC A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2258 C5M DT A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2262 HN3 DT A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2263 1HM5 DT A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2264 2HM5 DT A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2265 3HM5 DT A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2292 'H5' DA A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2296 1H2' DA A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2297 2H2' DA A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2325 'H5' DG A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2329 1H2' DG A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2330 2H2' DG A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2357 'H5' DA A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2361 1H2' DA A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2362 2H2' DA A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2389 'H5' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2393 1H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2394 2H2' DA A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2416 C5M DT A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2420 HN3 DT A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2421 1HM5 DT A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2422 2HM5 DT A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2423 3HM5 DT A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2450 'H5' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2454 1H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2455 2H2' DA A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2480 'H5' DC A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2484 1H2' DC A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2485 2H2' DC A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2510 'H5' DC A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2514 1H2' DC A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2515 2H2' DC A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2542 'H5' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2546 1H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2547 2H2' DA A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2575 'H5' DG A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2576 'HO3 DG A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2580 1H2' DG A 83 ... failed. Atom erased. Error: recognition of atom ATOM 2581 2H2' DG A 83 ... failed. Atom erased. Missing atom added: HETATM 1 P DA A 1 0.099 0.698 -2.603 1.00 0.00 P Missing atom added: HETATM 24 H5'2 DA A 1 1.743 -0.818 -0.699 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 1 2.229 -0.074 3.643 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 1 0.239 -0.135 3.818 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 2 0.311 -4.117 4.510 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 2 -3.499 -3.142 6.794 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 2 -3.224 -4.724 7.514 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 2 -6.915 -1.071 4.798 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 2 -3.677 -1.936 1.676 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 2 -3.600 -0.934 1.253 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 2 -4.382 -2.525 1.085 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 2 -2.697 -2.415 1.646 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 3 -3.680 -7.962 7.449 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 3 -7.530 -6.925 9.284 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 3 -8.307 -7.155 7.456 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 4 -9.111 -10.872 7.820 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 4 -13.164 -9.266 7.343 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 4 -12.898 -9.634 5.396 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 5 -14.554 -13.343 5.008 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 5 -17.271 -11.824 1.794 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 5 -15.622 -12.055 0.687 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 6 -16.891 -15.558 -0.399 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 6 -17.916 -14.284 -4.455 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 6 -15.950 -14.492 -4.751 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 7 -16.654 -18.182 -5.655 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 7 -13.146 -16.308 -8.201 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 7 -13.527 -17.560 -9.377 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 7 -10.060 -13.662 -6.016 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 7 -11.555 -17.118 -3.353 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 7 -11.771 -16.510 -2.473 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 7 -10.550 -17.537 -3.263 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 7 -12.278 -17.933 -3.412 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 8 -12.688 -20.474 -10.839 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 8 -9.049 -19.614 -12.972 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 8 -8.254 -20.242 -11.248 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 9 -8.008 -23.757 -12.630 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 9 -3.802 -22.644 -12.572 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 9 -3.799 -23.326 -10.693 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 10 -2.716 -26.859 -11.548 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 10 0.786 -25.786 -9.179 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 10 -0.235 -26.479 -7.606 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 11 0.895 -30.217 -7.993 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 11 -0.031 -28.963 -3.581 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 11 0.929 -30.365 -3.125 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 11 -3.692 -26.832 -2.270 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 11 -4.303 -28.568 -6.480 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 11 -4.667 -27.652 -6.945 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 11 -5.152 -29.167 -6.146 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 11 -3.724 -29.137 -7.207 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 12 1.776 -34.156 -3.331 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 12 -0.819 -33.153 0.216 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 12 -0.132 -34.562 1.015 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 12 -4.837 -31.595 0.663 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 12 -3.762 -31.272 -3.764 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 12 -3.881 -30.198 -3.904 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 12 -4.692 -31.777 -4.037 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 12 -2.958 -31.632 -4.408 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 13 -1.085 -38.037 1.679 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 13 -3.906 -37.309 5.002 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 13 -5.144 -37.108 3.445 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 14 -5.678 -41.357 4.233 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 14 -9.784 -40.556 5.344 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 14 -10.128 -40.628 3.377 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 15 -11.106 -44.429 3.437 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 15 -15.129 -43.188 1.762 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 15 -14.203 -43.345 -0.002 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 16 -15.214 -47.043 -0.356 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 16 -17.698 -45.769 -3.648 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 16 -16.089 -46.153 -4.771 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 17 -16.870 -49.710 -5.700 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 17 -16.847 -48.122 -9.712 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 17 -14.902 -48.585 -9.736 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 18 -15.274 -52.121 -11.205 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 18 -12.956 -50.477 -14.472 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 18 -11.342 -51.044 -13.437 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 19 -10.937 -54.561 -14.998 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 19 -7.160 -53.035 -16.354 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 19 -6.409 -53.672 -14.614 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 20 -5.376 -57.109 -15.864 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 20 -1.425 -55.558 -15.083 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 20 -1.643 -56.240 -13.216 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 21 0.175 -59.642 -13.950 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 21 2.451 -58.010 -10.380 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 21 1.018 -58.745 -9.195 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 22 3.321 -61.436 -8.533 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 22 4.216 -59.660 -4.562 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 22 2.507 -60.573 -4.071 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 23 4.885 -63.471 -2.888 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 23 2.909 -62.405 1.058 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 23 1.407 -63.573 0.445 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 24 1.387 -67.382 0.660 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 24 -0.760 -66.920 4.102 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 24 -1.788 -67.798 2.630 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 25 -1.903 -71.639 4.446 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 25 -6.233 -71.280 5.100 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 25 -6.425 -71.540 3.127 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 26 -4.433 -76.544 3.709 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 26 -7.376 -76.576 3.927 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 26 -7.336 -76.927 1.959 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 27 -7.091 -80.868 1.363 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 27 -10.282 -80.516 -1.714 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 27 -8.728 -80.233 -2.939 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 28 -8.405 -83.863 -3.911 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 28 -8.946 -82.000 -7.985 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 28 -6.949 -81.907 -7.994 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 29 -5.856 -84.983 -9.874 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 29 -2.765 -82.607 -12.161 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 29 -1.627 -83.176 -10.619 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 30 -0.561 -86.518 -12.796 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 30 3.495 -85.087 -13.519 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 30 3.807 -85.820 -11.685 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 31 4.905 -89.278 -13.519 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 31 6.026 -89.258 -9.031 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 31 7.411 -90.263 -9.442 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 31 4.231 -87.809 -5.389 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 31 0.898 -88.735 -8.359 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 31 0.380 -87.773 -8.301 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 31 0.429 -89.430 -7.652 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 31 0.781 -89.136 -9.371 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 32 8.918 -93.752 -10.431 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 32 10.880 -95.412 -11.693 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 32 12.159 -94.003 -11.078 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 33 13.316 -92.358 -7.332 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 33 14.652 -89.238 -6.276 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 33 13.319 -89.467 -4.805 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 34 16.400 -93.103 -1.529 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 34 11.897 -92.452 0.508 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 34 12.459 -93.539 1.772 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 34 8.196 -92.315 -1.599 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 34 11.464 -93.909 -4.380 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 34 11.204 -93.288 -5.226 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 34 10.984 -94.877 -4.456 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 34 12.537 -94.023 -4.306 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 35 12.961 -97.112 3.205 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 35 8.923 -96.970 5.108 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 35 8.270 -97.636 3.341 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 36 7.979-101.036 2.281 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 36 4.419-100.275 4.591 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 36 3.988-100.585 2.664 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 37 2.285-104.111 1.901 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 37 0.293-106.279 0.820 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 37 1.946-107.055 0.008 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 38 0.791-110.227 3.287 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 38 0.245-112.610 -0.743 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 38 -1.291-111.587 -1.512 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 39 0.035-111.532 -3.691 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 39 -0.009-110.410 -7.942 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 39 1.942-110.825 -8.067 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 40 2.745-115.180 -6.737 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 40 5.685-114.792 -10.046 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 40 7.007-114.160 -8.686 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 41 8.306-117.806 -8.548 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 41 12.153-115.259 -8.167 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 41 12.913-116.842 -8.276 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 41 12.426-111.913 -5.368 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 41 8.221-113.694 -5.017 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 41 7.678-112.756 -5.085 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 41 8.383-113.955 -3.974 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 41 7.665-114.482 -5.514 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 42 14.342-119.265 -5.852 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 42 16.184-116.563 -2.699 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 42 14.454-116.829 -1.734 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 43 12.387-120.160 -0.704 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 43 12.337-119.224 4.004 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 43 13.163-117.440 3.641 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 44 9.890-115.155 3.986 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 44 12.939-111.993 5.579 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 44 13.166-111.445 3.670 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 45 9.851-108.569 2.825 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 45 11.470-109.660 4.790 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 45 12.818-108.610 5.209 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 45 10.347-107.807 10.467 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 45 11.580-111.808 8.594 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 45 10.657-112.345 8.790 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 45 12.286-111.977 9.405 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 45 12.011-112.144 7.656 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 46 15.153-105.228 2.916 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 46 19.004-107.278 1.534 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 46 18.201-107.786 -0.224 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 47 17.237-103.379 -1.856 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 47 18.125-106.168 -5.669 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 47 16.156-106.334 -5.970 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 48 16.118-103.848 -8.682 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 48 15.183-106.572 -11.856 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 48 13.320-106.270 -11.198 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 49 11.830-102.826 -13.477 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 49 8.003-105.164 -13.895 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 49 7.643-104.610 -12.009 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 50 5.897-101.229 -14.915 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 50 3.163-103.100 -11.939 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 50 1.974-101.981 -12.595 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 50 3.510-104.545 -7.938 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 50 7.580-103.060 -9.440 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 50 8.115-104.011 -9.531 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 50 7.799-102.626 -8.457 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 50 7.945-102.377 -10.212 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 51 0.078 -98.895 -12.619 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 51 -1.860-100.380 -8.685 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 51 -0.338 -99.521 -7.715 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 52 -3.225 -96.078 -8.470 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 52 -1.313 -97.219 -3.941 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 52 -2.456 -96.083 -3.236 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 52 2.895 -97.934 -2.840 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 52 2.599 -96.002 -7.004 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 52 3.336 -96.646 -7.486 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 52 3.091 -95.087 -6.663 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 52 1.824 -95.741 -7.726 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 53 -2.925 -92.828 -2.339 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 53 -1.685 -94.237 1.436 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 53 0.163 -93.647 0.953 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 54 -0.387 -90.481 2.998 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 54 2.218 -91.006 6.149 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 54 3.505 -90.184 4.859 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 55 3.173 -86.687 2.713 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 55 7.547 -87.515 4.598 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 55 7.957 -86.797 2.777 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 56 8.520 -83.062 2.522 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 56 11.699 -83.163 -0.398 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 56 10.174 -82.858 -1.654 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 57 10.732 -79.166 -1.354 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 57 9.072 -80.752 -5.470 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 57 9.690 -79.230 -6.101 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 57 5.225 -82.830 -5.941 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 57 5.716 -81.700 -1.542 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 57 5.565 -82.692 -1.129 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 57 4.775 -81.156 -1.556 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 57 6.447 -81.158 -0.950 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 58 9.521 -76.120 -7.123 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 58 7.424 -78.095 -10.670 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 58 5.690 -77.760 -9.733 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 59 4.644 -74.654 -11.454 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 59 3.882 -73.577 -8.491 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 59 2.179 -73.412 -8.082 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 59 1.830 -77.803 -4.257 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 59 5.814 -75.471 -4.850 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 59 6.483 -76.334 -4.866 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 59 5.792 -75.056 -3.838 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 59 6.196 -74.712 -5.536 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 60 -0.899 -74.141 -13.779 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 60 -4.629 -76.442 -12.551 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 60 -5.425 -75.211 -13.523 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 60 -5.280 -77.621 -8.403 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 60 -0.890 -76.355 -8.765 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 60 -0.481 -77.241 -8.287 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 60 -0.996 -75.555 -8.035 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 60 -0.236 -76.034 -9.570 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 61 -6.956 -72.078 -13.717 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 61 -10.328 -74.476 -12.102 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 61 -9.754 -74.031 -10.239 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 62 -12.472 -71.428 -10.150 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 62 -12.507 -72.717 -5.910 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 62 -14.021 -71.826 -5.816 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 62 -8.719 -72.812 -3.526 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 62 -7.937 -70.872 -7.620 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 62 -7.013 -71.395 -7.858 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 62 -7.705 -69.916 -7.150 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 62 -8.503 -70.698 -8.534 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 63 -15.613 -68.877 -5.400 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 63 -15.202 -69.721 -1.028 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 63 -13.615 -68.509 -1.117 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 64 -13.446 -66.733 -1.325 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 64 -11.556 -64.214 1.450 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 64 -10.119 -63.407 0.318 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 65 -12.146 -59.934 1.743 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 65 -8.948 -59.696 4.652 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 65 -7.797 -59.051 3.150 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 66 -8.098 -55.159 3.709 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 66 -3.658 -55.327 2.862 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 66 -4.127 -55.144 0.927 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 67 -3.516 -51.248 1.522 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 67 0.196 -51.302 -1.012 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 67 -1.164 -51.089 -2.462 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 68 -3.985 -46.337 0.390 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 68 -4.377 -44.971 4.138 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 68 -2.388 -45.154 4.236 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 69 -0.276 -41.788 3.061 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 69 2.995 -42.682 5.991 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 69 3.792 -43.696 4.464 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 70 5.786 -40.386 3.709 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 70 8.910 -43.069 5.325 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 70 9.020 -44.042 3.582 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 71 12.232 -41.574 3.458 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 71 13.626 -45.143 1.465 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 71 15.204 -44.366 1.495 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 71 11.889 -47.263 -1.791 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 71 8.758 -44.251 -0.362 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 71 7.924 -44.922 -0.182 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 71 8.698 -43.846 -1.370 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 71 8.745 -43.441 0.362 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 72 17.602 -42.008 0.046 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 72 19.011 -45.448 -2.341 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 72 17.606 -44.959 -3.676 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 73 20.474 -43.148 -5.304 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 73 16.891 -45.010 -7.995 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 73 17.969 -44.617 -9.328 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 73 12.577 -44.134 -7.962 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 73 14.578 -41.509 -4.704 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 73 13.933 -41.805 -3.870 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 73 14.195 -40.571 -5.125 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 73 15.587 -41.329 -4.317 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 74 17.644 -41.123 -9.346 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 74 19.679 -40.216 -12.093 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 74 20.125 -42.009 -11.329 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 75 14.365 -40.301 -12.550 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 75 12.552 -43.497 -14.761 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 75 12.320 -43.657 -12.782 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 76 8.429 -40.564 -12.149 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 76 6.385 -39.609 -10.330 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 76 5.790 -41.162 -11.440 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 77 6.843 -45.586 -10.504 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 77 7.729 -47.853 -14.123 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 77 9.394 -48.141 -13.056 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 78 8.247 -51.495 -11.409 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 78 12.282 -50.563 -9.688 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 78 12.553 -52.301 -9.644 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 78 13.989 -47.443 -7.235 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 78 9.492 -46.688 -7.684 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 78 9.532 -45.732 -8.205 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 78 9.413 -46.513 -6.610 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 78 8.620 -47.248 -8.022 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 79 12.108 -55.411 -7.838 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 79 15.409 -53.811 -5.128 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 79 13.969 -53.115 -3.929 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 80 11.967 -54.374 -1.771 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 80 13.595 -52.082 1.366 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 80 11.608 -51.868 1.338 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 81 10.223 -53.343 4.487 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 81 11.544 -50.453 6.977 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 81 9.568 -50.752 6.953 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 82 9.862 -52.871 11.034 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 82 7.502 -49.064 12.138 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 82 5.928 -49.908 11.241 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 83 4.699 -50.699 14.735 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 83 1.128 -48.366 12.905 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 83 0.511 -50.033 11.989 1.00 0.00 H Number of atoms: 2636 Number of residues: 83 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. A 1 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. A 1 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. A 1 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. A 1 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. A 1 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2847 Number of angles built: 5166 Number of dihedrals built: 7721 Number of impropers built: 566 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 3464917 Number of van der Waals pairs: 293599 Number of H-bonds built: 50 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 11 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 148313.7530 kcal/mol (147839.7601 without restraints) Performing minimization step: 2. Total energy = 144511.2398 kcal/mol (144063.8488 without restraints) Performing minimization step: 3. Total energy = 140923.7859 kcal/mol (140500.5929 without restraints) Performing minimization step: 4. Total energy = 137532.0525 kcal/mol (137130.8921 without restraints) Performing minimization step: 5. Total energy = 134318.6292 kcal/mol (133937.5530 without restraints) Performing minimization step: 6. Total energy = 131267.8634 kcal/mol (130905.1214 without restraints) Performing minimization step: 7. Total energy = 128365.7021 kcal/mol (128019.7241 without restraints) Performing minimization step: 8. Total energy = 125599.5438 kcal/mol (125268.9226 without restraints) Performing minimization step: 9. Total energy = 122958.1002 kcal/mol (122641.5759 without restraints) Performing minimization step: 10. Total energy = 120431.2675 kcal/mol (120127.7129 without restraints) Performing minimization step: 11. Total energy = 118010.0075 kcal/mol (117718.4146 without restraints) Performing minimization step: 12. Total energy = 115686.2372 kcal/mol (115405.7045 without restraints) Performing minimization step: 13. Total energy = 113452.7272 kcal/mol (113182.4484 without restraints) Performing minimization step: 14. Total energy = 111303.0093 kcal/mol (111042.2628 without restraints) Performing minimization step: 15. Total energy = 109231.2921 kcal/mol (108979.4314 without restraints) Performing minimization step: 16. Total energy = 107232.3843 kcal/mol (106988.8297 without restraints) Performing minimization step: 17. Total energy = 105301.6264 kcal/mol (105065.8572 without restraints) Performing minimization step: 18. Total energy = 103434.8288 kcal/mol (103206.3762 without restraints) Performing minimization step: 19. Total energy = 101628.2169 kcal/mol (101406.6582 without restraints) Performing minimization step: 20. Total energy = 99878.3825 kcal/mol (99663.3354 without restraints) Performing minimization step: 21. Total energy = 98182.2402 kcal/mol (97973.3583 without restraints) Performing minimization step: 22. Total energy = 96536.9894 kcal/mol (96333.9579 without restraints) Performing minimization step: 23. Total energy = 94940.0811 kcal/mol (94742.6129 without restraints) Performing minimization step: 24. Total energy = 93389.1879 kcal/mol (93197.0205 without restraints) Performing minimization step: 25. Total energy = 91882.1789 kcal/mol (91695.0715 without restraints) Performing minimization step: 26. Total energy = 90417.0958 kcal/mol (90234.8269 without restraints) Performing minimization step: 27. Total energy = 88992.1346 kcal/mol (88814.4998 without restraints) Performing minimization step: 28. Total energy = 87605.6284 kcal/mol (87432.4384 without restraints) Performing minimization step: 29. Total energy = 86256.0308 kcal/mol (86087.1099 without restraints) Performing minimization step: 30. Total energy = 84941.9044 kcal/mol (84777.0887 without restraints) Performing minimization step: 31. Total energy = 83661.9081 kcal/mol (83501.0450 without restraints) Performing minimization step: 32. Total energy = 82414.7882 kcal/mol (82257.7343 without restraints) Performing minimization step: 33. Total energy = 81199.3688 kcal/mol (81045.9897 without restraints) Performing minimization step: 34. Total energy = 80014.5444 kcal/mol (79864.7136 without restraints) Performing minimization step: 35. Total energy = 78859.2732 kcal/mol (78712.8713 without restraints) Performing minimization step: 36. Total energy = 77732.5712 kcal/mol (77589.4852 without restraints) Performing minimization step: 37. Total energy = 76633.5069 kcal/mol (76493.6299 without restraints) Performing minimization step: 38. Total energy = 75561.1968 kcal/mol (75424.4271 without restraints) Performing minimization step: 39. Total energy = 74514.8013 kcal/mol (74381.0424 without restraints) Performing minimization step: 40. Total energy = 73493.5212 kcal/mol (73362.6810 without restraints) Performing minimization step: 41. Total energy = 72496.5946 kcal/mol (72368.5852 without restraints) Performing minimization step: 42. Total energy = 71523.2933 kcal/mol (71398.0307 without restraints) Performing minimization step: 43. Total energy = 70572.9216 kcal/mol (70450.3255 without restraints) Performing minimization step: 44. Total energy = 69644.8129 kcal/mol (69524.8063 without restraints) Performing minimization step: 45. Total energy = 68738.3283 kcal/mol (68620.8373 without restraints) Performing minimization step: 46. Total energy = 67852.8545 kcal/mol (67737.8082 without restraints) Performing minimization step: 47. Total energy = 66987.8022 kcal/mol (66875.1324 without restraints) Performing minimization step: 48. Total energy = 66142.6047 kcal/mol (66032.2458 without restraints) Performing minimization step: 49. Total energy = 65316.7163 kcal/mol (65208.6052 without restraints) Performing minimization step: 50. Total energy = 64509.6116 kcal/mol (64403.6872 without restraints) Performing minimization step: 51. Total energy = 63720.7834 kcal/mol (63616.9870 without restraints) Performing minimization step: 52. Total energy = 62949.7432 kcal/mol (62848.0183 without restraints) Performing minimization step: 53. Total energy = 62196.0183 kcal/mol (62096.3100 without restraints) Performing minimization step: 54. Total energy = 61459.1527 kcal/mol (61361.4079 without restraints) Performing minimization step: 55. Total energy = 60738.7052 kcal/mol (60642.8729 without restraints) Performing minimization step: 56. Total energy = 60034.2493 kcal/mol (59940.2799 without restraints) Performing minimization step: 57. Total energy = 59345.3720 kcal/mol (59253.2176 without restraints) Performing minimization step: 58. Total energy = 58671.6735 kcal/mol (58581.2877 without restraints) Performing minimization step: 59. Total energy = 58012.7664 kcal/mol (57924.1041 without restraints) Performing minimization step: 60. Total energy = 57368.2757 kcal/mol (57281.2933 without restraints) Performing minimization step: 61. Total energy = 56737.8373 kcal/mol (56652.4926 without restraints) Performing minimization step: 62. Total energy = 56121.0986 kcal/mol (56037.3504 without restraints) Performing minimization step: 63. Total energy = 55517.7166 kcal/mol (55435.5252 without restraints) Performing minimization step: 64. Total energy = 54927.3593 kcal/mol (54846.6861 without restraints) Performing minimization step: 65. Total energy = 54349.7038 kcal/mol (54270.5111 without restraints) Performing minimization step: 66. Total energy = 53784.4365 kcal/mol (53706.6881 without restraints) Performing minimization step: 67. Total energy = 53231.2536 kcal/mol (53154.9138 without restraints) Performing minimization step: 68. Total energy = 52689.8586 kcal/mol (52614.8932 without restraints) Performing minimization step: 69. Total energy = 52159.9645 kcal/mol (52086.3399 without restraints) Performing minimization step: 70. Total energy = 51641.2914 kcal/mol (51568.9751 without restraints) Performing minimization step: 71. Total energy = 51133.5678 kcal/mol (51062.5281 without restraints) Performing minimization step: 72. Total energy = 50636.5287 kcal/mol (50566.7350 without restraints) Performing minimization step: 73. Total energy = 50149.9171 kcal/mol (50081.3393 without restraints) Performing minimization step: 74. Total energy = 49673.4827 kcal/mol (49606.0917 without restraints) Performing minimization step: 75. Total energy = 49206.9817 kcal/mol (49140.7492 without restraints) Performing minimization step: 76. Total energy = 48750.1769 kcal/mol (48685.0751 without restraints) Performing minimization step: 77. Total energy = 48302.8372 kcal/mol (48238.8393 without restraints) Performing minimization step: 78. Total energy = 47864.7385 kcal/mol (47801.8184 without restraints) Performing minimization step: 79. Total energy = 47435.6614 kcal/mol (47373.7934 without restraints) Performing minimization step: 80. Total energy = 47015.3925 kcal/mol (46954.5519 without restraints) Performing minimization step: 81. Total energy = 46603.7240 kcal/mol (46543.8865 without restraints) Performing minimization step: 82. Total energy = 46200.4534 kcal/mol (46141.5955 without restraints) Performing minimization step: 83. Total energy = 45805.3838 kcal/mol (45747.4824 without restraints) Performing minimization step: 84. Total energy = 45418.3221 kcal/mol (45361.3550 without restraints) Performing minimization step: 85. Total energy = 45039.0815 kcal/mol (44983.0266 without restraints) Performing minimization step: 86. Total energy = 44667.4790 kcal/mol (44612.3152 without restraints) Performing minimization step: 87. Total energy = 44303.3366 kcal/mol (44249.0431 without restraints) Performing minimization step: 88. Total energy = 43946.4806 kcal/mol (43893.0372 without restraints) Performing minimization step: 89. Total energy = 43596.7418 kcal/mol (43544.1287 without restraints) Performing minimization step: 90. Total energy = 43253.9554 kcal/mol (43202.1533 without restraints) Performing minimization step: 91. Total energy = 42917.9595 kcal/mol (42866.9497 without restraints) Performing minimization step: 92. Total energy = 42588.5976 kcal/mol (42538.3618 without restraints) Performing minimization step: 93. Total energy = 42265.7163 kcal/mol (42216.2366 without restraints) Performing minimization step: 94. Total energy = 41949.1663 kcal/mol (41900.4253 without restraints) Performing minimization step: 95. Total energy = 41638.8015 kcal/mol (41590.7822 without restraints) Performing minimization step: 96. Total energy = 41334.4802 kcal/mol (41287.1660 without restraints) Performing minimization step: 97. Total energy = 41036.0633 kcal/mol (40989.4381 without restraints) Performing minimization step: 98. Total energy = 40743.4154 kcal/mol (40697.4634 without restraints) Performing minimization step: 99. Total energy = 40456.4045 kcal/mol (40411.1102 without restraints) Performing minimization step: 100. Total energy = 40174.9016 kcal/mol (40130.2500 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 101. Total energy = 39898.7808 kcal/mol (39854.7574 without restraints) Performing minimization step: 102. Total energy = 39627.9193 kcal/mol (39584.5096 without restraints) Performing minimization step: 103. Total energy = 39362.1977 kcal/mol (39319.3878 without restraints) Performing minimization step: 104. Total energy = 39101.4989 kcal/mol (39059.2751 without restraints) Performing minimization step: 105. Total energy = 38845.7082 kcal/mol (38804.0573 without restraints) Performing minimization step: 106. Total energy = 38594.7145 kcal/mol (38553.6234 without restraints) Performing minimization step: 107. Total energy = 38348.4095 kcal/mol (38307.8656 without restraints) Performing minimization step: 108. Total energy = 38106.6864 kcal/mol (38066.6772 without restraints) Performing minimization step: 109. Total energy = 37869.4418 kcal/mol (37829.9554 without restraints) Performing minimization step: 110. Total energy = 37636.5745 kcal/mol (37597.5990 without restraints) Performing minimization step: 111. Total energy = 37407.9861 kcal/mol (37369.5100 without restraints) Performing minimization step: 112. Total energy = 37183.5797 kcal/mol (37145.5918 without restraints) Performing minimization step: 113. Total energy = 36963.2614 kcal/mol (36925.7506 without restraints) Performing minimization step: 114. Total energy = 36746.9392 kcal/mol (36709.8949 without restraints) Performing minimization step: 115. Total energy = 36534.5238 kcal/mol (36497.9355 without restraints) Performing minimization step: 116. Total energy = 36325.9270 kcal/mol (36289.7845 without restraints) Performing minimization step: 117. Total energy = 36121.0636 kcal/mol (36085.3569 without restraints) Performing minimization step: 118. Total energy = 35919.8502 kcal/mol (35884.5696 without restraints) Performing minimization step: 119. Total energy = 35722.2052 kcal/mol (35687.3413 without restraints) Performing minimization step: 120. Total energy = 35528.0490 kcal/mol (35493.5923 without restraints) Performing minimization step: 121. Total energy = 35337.3038 kcal/mol (35303.2454 without restraints) Performing minimization step: 122. Total energy = 35149.8936 kcal/mol (35116.2246 without restraints) Performing minimization step: 123. Total energy = 34965.7448 kcal/mol (34932.4566 without restraints) Performing minimization step: 124. Total energy = 34784.7848 kcal/mol (34751.8688 without restraints) Performing minimization step: 125. Total energy = 34606.9427 kcal/mol (34574.3908 without restraints) Performing minimization step: 126. Total energy = 34432.1498 kcal/mol (34399.9539 without restraints) Performing minimization step: 127. Total energy = 34260.3391 kcal/mol (34228.4914 without restraints) Performing minimization step: 128. Total energy = 34091.4440 kcal/mol (34059.9370 without restraints) Performing minimization step: 129. Total energy = 33925.4007 kcal/mol (33894.2266 without restraints) Performing minimization step: 130. Total energy = 33762.1463 kcal/mol (33731.2979 without restraints) Performing minimization step: 131. Total energy = 33601.6197 kcal/mol (33571.0899 without restraints) Performing minimization step: 132. Total energy = 33443.7613 kcal/mol (33413.5431 without restraints) Performing minimization step: 133. Total energy = 33288.5122 kcal/mol (33258.5987 without restraints) Performing minimization step: 134. Total energy = 33135.8150 kcal/mol (33106.1998 without restraints) Performing minimization step: 135. Total energy = 32985.6154 kcal/mol (32956.2918 without restraints) Performing minimization step: 136. Total energy = 32837.8579 kcal/mol (32808.8195 without restraints) Performing minimization step: 137. Total energy = 32692.4897 kcal/mol (32663.7303 without restraints) Performing minimization step: 138. Total energy = 32549.4586 kcal/mol (32520.9724 without restraints) Performing minimization step: 139. Total energy = 32408.7140 kcal/mol (32380.4950 without restraints) Performing minimization step: 140. Total energy = 32270.2070 kcal/mol (32242.2493 without restraints) Performing minimization step: 141. Total energy = 32133.8885 kcal/mol (32106.1866 without restraints) Performing minimization step: 142. Total energy = 31999.7118 kcal/mol (31972.2602 without restraints) Performing minimization step: 143. Total energy = 31867.6307 kcal/mol (31840.4238 without restraints) Performing minimization step: 144. Total energy = 31737.5995 kcal/mol (31710.6322 without restraints) Performing minimization step: 145. Total energy = 31609.5746 kcal/mol (31582.8418 without restraints) Performing minimization step: 146. Total energy = 31483.5135 kcal/mol (31457.0101 without restraints) Performing minimization step: 147. Total energy = 31359.3733 kcal/mol (31333.0945 without restraints) Performing minimization step: 148. Total energy = 31237.1137 kcal/mol (31211.0547 without restraints) Performing minimization step: 149. Total energy = 31116.6945 kcal/mol (31090.8506 without restraints) Performing minimization step: 150. Total energy = 30998.0764 kcal/mol (30972.4430 without restraints) Performing minimization step: 151. Total energy = 30881.2211 kcal/mol (30855.7938 without restraints) Performing minimization step: 152. Total energy = 30766.0915 kcal/mol (30740.8660 without restraints) Performing minimization step: 153. Total energy = 30652.6512 kcal/mol (30627.6231 without restraints) Performing minimization step: 154. Total energy = 30540.8641 kcal/mol (30516.0293 without restraints) Performing minimization step: 155. Total energy = 30430.6961 kcal/mol (30406.0506 without restraints) Performing minimization step: 156. Total energy = 30322.1120 kcal/mol (30297.6518 without restraints) Performing minimization step: 157. Total energy = 30215.0795 kcal/mol (30190.8008 without restraints) Performing minimization step: 158. Total energy = 30109.5658 kcal/mol (30085.4646 without restraints) Performing minimization step: 159. Total energy = 30005.5393 kcal/mol (29981.6120 without restraints) Performing minimization step: 160. Total energy = 29902.9689 kcal/mol (29879.2120 without restraints) Performing minimization step: 161. Total energy = 29801.8238 kcal/mol (29778.2337 without restraints) Performing minimization step: 162. Total energy = 29702.0752 kcal/mol (29678.6484 without restraints) Performing minimization step: 163. Total energy = 29603.6941 kcal/mol (29580.4272 without restraints) Performing minimization step: 164. Total energy = 29506.6518 kcal/mol (29483.5417 without restraints) Performing minimization step: 165. Total energy = 29410.9209 kcal/mol (29387.9641 without restraints) Performing minimization step: 166. Total energy = 29316.4742 kcal/mol (29293.6678 without restraints) Performing minimization step: 167. Total energy = 29223.2858 kcal/mol (29200.6266 without restraints) Performing minimization step: 168. Total energy = 29131.3292 kcal/mol (29108.8142 without restraints) Performing minimization step: 169. Total energy = 29040.5795 kcal/mol (29018.2058 without restraints) Performing minimization step: 170. Total energy = 28951.0121 kcal/mol (28928.7767 without restraints) Performing minimization step: 171. Total energy = 28862.6030 kcal/mol (28840.5032 without restraints) Performing minimization step: 172. Total energy = 28775.3283 kcal/mol (28753.3614 without restraints) Performing minimization step: 173. Total energy = 28689.1654 kcal/mol (28667.3287 without restraints) Performing minimization step: 174. Total energy = 28604.0913 kcal/mol (28582.3820 without restraints) Performing minimization step: 175. Total energy = 28520.0836 kcal/mol (28498.4995 without restraints) Performing minimization step: 176. Total energy = 28437.1225 kcal/mol (28415.6608 without restraints) Performing minimization step: 177. Total energy = 28355.1860 kcal/mol (28333.8444 without restraints) Performing minimization step: 178. Total energy = 28274.2535 kcal/mol (28253.0294 without restraints) Performing minimization step: 179. Total energy = 28194.3044 kcal/mol (28173.1955 without restraints) Performing minimization step: 180. Total energy = 28115.3198 kcal/mol (28094.3240 without restraints) Performing minimization step: 181. Total energy = 28037.2804 kcal/mol (28016.3953 without restraints) Performing minimization step: 182. Total energy = 27960.1668 kcal/mol (27939.3903 without restraints) Performing minimization step: 183. Total energy = 27883.9611 kcal/mol (27863.2911 without restraints) Performing minimization step: 184. Total energy = 27808.6457 kcal/mol (27788.0800 without restraints) Performing minimization step: 185. Total energy = 27734.2024 kcal/mol (27713.7390 without restraints) Performing minimization step: 186. Total energy = 27660.6142 kcal/mol (27640.2511 without restraints) Performing minimization step: 187. Total energy = 27587.8648 kcal/mol (27567.6001 without restraints) Performing minimization step: 188. Total energy = 27515.9371 kcal/mol (27495.7687 without restraints) Performing minimization step: 189. Total energy = 27444.8152 kcal/mol (27424.7414 without restraints) Performing minimization step: 190. Total energy = 27374.4835 kcal/mol (27354.5025 without restraints) Performing minimization step: 191. Total energy = 27304.9267 kcal/mol (27285.0365 without restraints) Performing minimization step: 192. Total energy = 27236.1296 kcal/mol (27216.3287 without restraints) Performing minimization step: 193. Total energy = 27168.0779 kcal/mol (27148.3644 without restraints) Performing minimization step: 194. Total energy = 27100.7567 kcal/mol (27081.1290 without restraints) Performing minimization step: 195. Total energy = 27034.1522 kcal/mol (27014.6088 without restraints) Performing minimization step: 196. Total energy = 26968.2504 kcal/mol (26948.7895 without restraints) Performing minimization step: 197. Total energy = 26903.0380 kcal/mol (26883.6580 without restraints) Performing minimization step: 198. Total energy = 26838.5021 kcal/mol (26819.2016 without restraints) Performing minimization step: 199. Total energy = 26774.6294 kcal/mol (26755.4068 without restraints) Performing minimization step: 200. Total energy = 26711.4080 kcal/mol (26692.2619 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 201. Total energy = 26648.8247 kcal/mol (26629.7537 without restraints) Performing minimization step: 202. Total energy = 26586.8678 kcal/mol (26567.8704 without restraints) Performing minimization step: 203. Total energy = 26525.5257 kcal/mol (26506.6006 without restraints) Performing minimization step: 204. Total energy = 26464.7867 kcal/mol (26445.9324 without restraints) Performing minimization step: 205. Total energy = 26404.6393 kcal/mol (26385.8548 without restraints) Performing minimization step: 206. Total energy = 26345.0731 kcal/mol (26326.3569 without restraints) Performing minimization step: 207. Total energy = 26286.0773 kcal/mol (26267.4282 without restraints) Performing minimization step: 208. Total energy = 26227.6405 kcal/mol (26209.0571 without restraints) Performing minimization step: 209. Total energy = 26169.7524 kcal/mol (26151.2338 without restraints) Performing minimization step: 210. Total energy = 26112.4035 kcal/mol (26093.9484 without restraints) Performing minimization step: 211. Total energy = 26055.5841 kcal/mol (26037.1913 without restraints) Performing minimization step: 212. Total energy = 25999.2838 kcal/mol (25980.9522 without restraints) Performing minimization step: 213. Total energy = 25943.4937 kcal/mol (25925.2222 without restraints) Performing minimization step: 214. Total energy = 25888.2038 kcal/mol (25869.9913 without restraints) Performing minimization step: 215. Total energy = 25833.4057 kcal/mol (25815.2512 without restraints) Performing minimization step: 216. Total energy = 25779.0904 kcal/mol (25760.9928 without restraints) Performing minimization step: 217. Total energy = 25725.2488 kcal/mol (25707.2072 without restraints) Performing minimization step: 218. Total energy = 25671.8727 kcal/mol (25653.8859 without restraints) Performing minimization step: 219. Total energy = 25618.9539 kcal/mol (25601.0210 without restraints) Performing minimization step: 220. Total energy = 25566.4842 kcal/mol (25548.6045 without restraints) Performing minimization step: 221. Total energy = 25514.4558 kcal/mol (25496.6282 without restraints) Performing minimization step: 222. Total energy = 25462.8604 kcal/mol (25445.0838 without restraints) Performing minimization step: 223. Total energy = 25411.6908 kcal/mol (25393.9646 without restraints) Performing minimization step: 224. Total energy = 25360.9394 kcal/mol (25343.2626 without restraints) Performing minimization step: 225. Total energy = 25310.5993 kcal/mol (25292.9711 without restraints) Performing minimization step: 226. Total energy = 25260.6625 kcal/mol (25243.0820 without restraints) Performing minimization step: 227. Total energy = 25211.1229 kcal/mol (25193.5893 without restraints) Performing minimization step: 228. Total energy = 25161.9725 kcal/mol (25144.4850 without restraints) Performing minimization step: 229. Total energy = 25113.2055 kcal/mol (25095.7634 without restraints) Performing minimization step: 230. Total energy = 25064.8151 kcal/mol (25047.4176 without restraints) Performing minimization step: 231. Total energy = 25016.7950 kcal/mol (24999.4413 without restraints) Performing minimization step: 232. Total energy = 24969.1387 kcal/mol (24951.8281 without restraints) Performing minimization step: 233. Total energy = 24921.8398 kcal/mol (24904.5717 without restraints) Performing minimization step: 234. Total energy = 24874.8931 kcal/mol (24857.6667 without restraints) Performing minimization step: 235. Total energy = 24828.2922 kcal/mol (24811.1067 without restraints) Performing minimization step: 236. Total energy = 24782.0313 kcal/mol (24764.8863 without restraints) Performing minimization step: 237. Total energy = 24736.1049 kcal/mol (24718.9995 without restraints) Performing minimization step: 238. Total energy = 24690.5070 kcal/mol (24673.4406 without restraints) Performing minimization step: 239. Total energy = 24645.2327 kcal/mol (24628.2048 without restraints) Performing minimization step: 240. Total energy = 24600.2769 kcal/mol (24583.2867 without restraints) Performing minimization step: 241. Total energy = 24555.6336 kcal/mol (24538.6808 without restraints) Performing minimization step: 242. Total energy = 24511.2988 kcal/mol (24494.3824 without restraints) Performing minimization step: 243. Total energy = 24467.2664 kcal/mol (24450.3862 without restraints) Performing minimization step: 244. Total energy = 24423.5322 kcal/mol (24406.6874 without restraints) Performing minimization step: 245. Total energy = 24380.0913 kcal/mol (24363.2814 without restraints) Performing minimization step: 246. Total energy = 24336.9389 kcal/mol (24320.1633 without restraints) Performing minimization step: 247. Total energy = 24294.0708 kcal/mol (24277.3291 without restraints) Performing minimization step: 248. Total energy = 24251.4821 kcal/mol (24234.7737 without restraints) Performing minimization step: 249. Total energy = 24209.1685 kcal/mol (24192.4930 without restraints) Performing minimization step: 250. Total energy = 24167.1260 kcal/mol (24150.4828 without restraints) Performing minimization step: 251. Total energy = 24125.3498 kcal/mol (24108.7383 without restraints) Performing minimization step: 252. Total energy = 24083.8367 kcal/mol (24067.2565 without restraints) Performing minimization step: 253. Total energy = 24042.5815 kcal/mol (24026.0323 without restraints) Performing minimization step: 254. Total energy = 24001.5817 kcal/mol (23985.0629 without restraints) Performing minimization step: 255. Total energy = 23960.8326 kcal/mol (23944.3440 without restraints) Performing minimization step: 256. Total energy = 23920.3303 kcal/mol (23903.8711 without restraints) Performing minimization step: 257. Total energy = 23880.0714 kcal/mol (23863.6412 without restraints) Performing minimization step: 258. Total energy = 23840.0515 kcal/mol (23823.6499 without restraints) Performing minimization step: 259. Total energy = 23800.2681 kcal/mol (23783.8949 without restraints) Performing minimization step: 260. Total energy = 23760.7175 kcal/mol (23744.3722 without restraints) Performing minimization step: 261. Total energy = 23721.3962 kcal/mol (23705.0786 without restraints) Performing minimization step: 262. Total energy = 23682.3011 kcal/mol (23666.0104 without restraints) Performing minimization step: 263. Total energy = 23643.4282 kcal/mol (23627.1642 without restraints) Performing minimization step: 264. Total energy = 23604.7747 kcal/mol (23588.5371 without restraints) Performing minimization step: 265. Total energy = 23566.3377 kcal/mol (23550.1261 without restraints) Performing minimization step: 266. Total energy = 23528.1136 kcal/mol (23511.9277 without restraints) Performing minimization step: 267. Total energy = 23490.0996 kcal/mol (23473.9389 without restraints) Performing minimization step: 268. Total energy = 23452.2927 kcal/mol (23436.1569 without restraints) Performing minimization step: 269. Total energy = 23414.6900 kcal/mol (23398.5789 without restraints) Performing minimization step: 270. Total energy = 23377.2892 kcal/mol (23361.2023 without restraints) Performing minimization step: 271. Total energy = 23340.0867 kcal/mol (23324.0236 without restraints) Performing minimization step: 272. Total energy = 23303.0803 kcal/mol (23287.0409 without restraints) Performing minimization step: 273. Total energy = 23266.2669 kcal/mol (23250.2509 without restraints) Performing minimization step: 274. Total energy = 23229.6448 kcal/mol (23213.6518 without restraints) Performing minimization step: 275. Total energy = 23193.2108 kcal/mol (23177.2405 without restraints) Performing minimization step: 276. Total energy = 23156.9624 kcal/mol (23141.0145 without restraints) Performing minimization step: 277. Total energy = 23120.8971 kcal/mol (23104.9715 without restraints) Performing minimization step: 278. Total energy = 23085.0130 kcal/mol (23069.1092 without restraints) Performing minimization step: 279. Total energy = 23049.3071 kcal/mol (23033.4250 without restraints) Performing minimization step: 280. Total energy = 23013.7772 kcal/mol (22997.9163 without restraints) Performing minimization step: 281. Total energy = 22978.4210 kcal/mol (22962.5812 without restraints) Performing minimization step: 282. Total energy = 22943.2365 kcal/mol (22927.4176 without restraints) Performing minimization step: 283. Total energy = 22908.2216 kcal/mol (22892.4231 without restraints) Performing minimization step: 284. Total energy = 22873.3738 kcal/mol (22857.5957 without restraints) Performing minimization step: 285. Total energy = 22838.6912 kcal/mol (22822.9331 without restraints) Performing minimization step: 286. Total energy = 22804.1715 kcal/mol (22788.4333 without restraints) Performing minimization step: 287. Total energy = 22769.8130 kcal/mol (22754.0943 without restraints) Performing minimization step: 288. Total energy = 22735.6136 kcal/mol (22719.9143 without restraints) Performing minimization step: 289. Total energy = 22701.5710 kcal/mol (22685.8908 without restraints) Performing minimization step: 290. Total energy = 22667.6843 kcal/mol (22652.0230 without restraints) Performing minimization step: 291. Total energy = 22633.9504 kcal/mol (22618.3078 without restraints) Performing minimization step: 292. Total energy = 22600.3677 kcal/mol (22584.7438 without restraints) Performing minimization step: 293. Total energy = 22566.9357 kcal/mol (22551.3300 without restraints) Performing minimization step: 294. Total energy = 22533.6512 kcal/mol (22518.0636 without restraints) Performing minimization step: 295. Total energy = 22500.5128 kcal/mol (22484.9431 without restraints) Performing minimization step: 296. Total energy = 22467.5193 kcal/mol (22451.9672 without restraints) Performing minimization step: 297. Total energy = 22434.6686 kcal/mol (22419.1340 without restraints) Performing minimization step: 298. Total energy = 22401.9592 kcal/mol (22386.4419 without restraints) Performing minimization step: 299. Total energy = 22369.3897 kcal/mol (22353.8896 without restraints) Performing minimization step: 300. Total energy = 22336.9582 kcal/mol (22321.4748 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 301. Total energy = 22304.6626 kcal/mol (22289.1963 without restraints) Performing minimization step: 302. Total energy = 22272.5031 kcal/mol (22257.0532 without restraints) Performing minimization step: 303. Total energy = 22240.4768 kcal/mol (22225.0434 without restraints) Performing minimization step: 304. Total energy = 22208.5822 kcal/mol (22193.1651 without restraints) Performing minimization step: 305. Total energy = 22176.8185 kcal/mol (22161.4174 without restraints) Performing minimization step: 306. Total energy = 22145.1841 kcal/mol (22129.7990 without restraints) Performing minimization step: 307. Total energy = 22113.6775 kcal/mol (22098.3082 without restraints) Performing minimization step: 308. Total energy = 22082.2979 kcal/mol (22066.9441 without restraints) Performing minimization step: 309. Total energy = 22051.0433 kcal/mol (22035.7050 without restraints) Performing minimization step: 310. Total energy = 22019.9122 kcal/mol (22004.5892 without restraints) Performing minimization step: 311. Total energy = 21988.9040 kcal/mol (21973.5961 without restraints) Performing minimization step: 312. Total energy = 21958.0172 kcal/mol (21942.7244 without restraints) Performing minimization step: 313. Total energy = 21927.2504 kcal/mol (21911.9724 without restraints) Performing minimization step: 314. Total energy = 21896.6020 kcal/mol (21881.3387 without restraints) Performing minimization step: 315. Total energy = 21866.0718 kcal/mol (21850.8231 without restraints) Performing minimization step: 316. Total energy = 21835.6581 kcal/mol (21820.4239 without restraints) Performing minimization step: 317. Total energy = 21805.3597 kcal/mol (21790.1398 without restraints) Performing minimization step: 318. Total energy = 21775.1759 kcal/mol (21759.9702 without restraints) Performing minimization step: 319. Total energy = 21745.1050 kcal/mol (21729.9133 without restraints) Performing minimization step: 320. Total energy = 21715.1462 kcal/mol (21699.9686 without restraints) Performing minimization step: 321. Total energy = 21685.2984 kcal/mol (21670.1346 without restraints) Performing minimization step: 322. Total energy = 21655.5604 kcal/mol (21640.4101 without restraints) Performing minimization step: 323. Total energy = 21625.9314 kcal/mol (21610.7949 without restraints) Performing minimization step: 324. Total energy = 21596.4101 kcal/mol (21581.2870 without restraints) Performing minimization step: 325. Total energy = 21566.9964 kcal/mol (21551.8866 without restraints) Performing minimization step: 326. Total energy = 21537.6874 kcal/mol (21522.5909 without restraints) Performing minimization step: 327. Total energy = 21508.4836 kcal/mol (21493.4001 without restraints) Performing minimization step: 328. Total energy = 21479.3841 kcal/mol (21464.3137 without restraints) Performing minimization step: 329. Total energy = 21450.3874 kcal/mol (21435.3300 without restraints) Performing minimization step: 330. Total energy = 21421.4930 kcal/mol (21406.4483 without restraints) Performing minimization step: 331. Total energy = 21392.7001 kcal/mol (21377.6682 without restraints) Performing minimization step: 332. Total energy = 21364.0071 kcal/mol (21348.9876 without restraints) Performing minimization step: 333. Total energy = 21335.4140 kcal/mol (21320.4071 without restraints) Performing minimization step: 334. Total energy = 21306.9198 kcal/mol (21291.9253 without restraints) Performing minimization step: 335. Total energy = 21278.5228 kcal/mol (21263.5407 without restraints) Performing minimization step: 336. Total energy = 21250.2230 kcal/mol (21235.2530 without restraints) Performing minimization step: 337. Total energy = 21222.0195 kcal/mol (21207.0616 without restraints) Performing minimization step: 338. Total energy = 21193.9110 kcal/mol (21178.9652 without restraints) Performing minimization step: 339. Total energy = 21165.8974 kcal/mol (21150.9635 without restraints) Performing minimization step: 340. Total energy = 21137.9772 kcal/mol (21123.0551 without restraints) Performing minimization step: 341. Total energy = 21110.1500 kcal/mol (21095.2396 without restraints) Performing minimization step: 342. Total energy = 21082.4155 kcal/mol (21067.5168 without restraints) Performing minimization step: 343. Total energy = 21054.7719 kcal/mol (21039.8848 without restraints) Performing minimization step: 344. Total energy = 21027.2198 kcal/mol (21012.3442 without restraints) Performing minimization step: 345. Total energy = 20999.7575 kcal/mol (20984.8934 without restraints) Performing minimization step: 346. Total energy = 20972.3843 kcal/mol (20957.5313 without restraints) Performing minimization step: 347. Total energy = 20945.0989 kcal/mol (20930.2574 without restraints) Performing minimization step: 348. Total energy = 20917.9026 kcal/mol (20903.0722 without restraints) Performing minimization step: 349. Total energy = 20890.7934 kcal/mol (20875.9741 without restraints) Performing minimization step: 350. Total energy = 20863.7707 kcal/mol (20848.9625 without restraints) Performing minimization step: 351. Total energy = 20836.8341 kcal/mol (20822.0368 without restraints) Performing minimization step: 352. Total energy = 20809.9830 kcal/mol (20795.1967 without restraints) Performing minimization step: 353. Total energy = 20783.2169 kcal/mol (20768.4413 without restraints) Performing minimization step: 354. Total energy = 20756.5347 kcal/mol (20741.7698 without restraints) Performing minimization step: 355. Total energy = 20729.9359 kcal/mol (20715.1817 without restraints) Performing minimization step: 356. Total energy = 20703.4195 kcal/mol (20688.6758 without restraints) Performing minimization step: 357. Total energy = 20676.9854 kcal/mol (20662.2523 without restraints) Performing minimization step: 358. Total energy = 20650.6331 kcal/mol (20635.9105 without restraints) Performing minimization step: 359. Total energy = 20624.3621 kcal/mol (20609.6498 without restraints) Performing minimization step: 360. Total energy = 20598.1714 kcal/mol (20583.4695 without restraints) Performing minimization step: 361. Total energy = 20572.0609 kcal/mol (20557.3693 without restraints) Performing minimization step: 362. Total energy = 20546.0301 kcal/mol (20531.3487 without restraints) Performing minimization step: 363. Total energy = 20520.0780 kcal/mol (20505.4067 without restraints) Performing minimization step: 364. Total energy = 20494.2045 kcal/mol (20479.5433 without restraints) Performing minimization step: 365. Total energy = 20468.4087 kcal/mol (20453.7576 without restraints) Performing minimization step: 366. Total energy = 20442.6904 kcal/mol (20428.0492 without restraints) Performing minimization step: 367. Total energy = 20417.0488 kcal/mol (20402.4177 without restraints) Performing minimization step: 368. Total energy = 20391.4836 kcal/mol (20376.8621 without restraints) Performing minimization step: 369. Total energy = 20365.9940 kcal/mol (20351.3823 without restraints) Performing minimization step: 370. Total energy = 20340.5793 kcal/mol (20325.9773 without restraints) Performing minimization step: 371. Total energy = 20315.2399 kcal/mol (20300.6476 without restraints) Performing minimization step: 372. Total energy = 20289.9744 kcal/mol (20275.3918 without restraints) Performing minimization step: 373. Total energy = 20264.7827 kcal/mol (20250.2095 without restraints) Performing minimization step: 374. Total energy = 20239.6653 kcal/mol (20225.1020 without restraints) Performing minimization step: 375. Total energy = 20214.6204 kcal/mol (20200.0663 without restraints) Performing minimization step: 376. Total energy = 20189.6480 kcal/mol (20175.1033 without restraints) Performing minimization step: 377. Total energy = 20164.7477 kcal/mol (20150.2124 without restraints) Performing minimization step: 378. Total energy = 20139.9190 kcal/mol (20125.3930 without restraints) Performing minimization step: 379. Total energy = 20115.1617 kcal/mol (20100.6450 without restraints) Performing minimization step: 380. Total energy = 20090.4746 kcal/mol (20075.9671 without restraints) Performing minimization step: 381. Total energy = 20065.8581 kcal/mol (20051.3597 without restraints) Performing minimization step: 382. Total energy = 20041.3116 kcal/mol (20026.8223 without restraints) Performing minimization step: 383. Total energy = 20016.8347 kcal/mol (20002.3547 without restraints) Performing minimization step: 384. Total energy = 19992.4270 kcal/mol (19977.9558 without restraints) Performing minimization step: 385. Total energy = 19968.0882 kcal/mol (19953.6260 without restraints) Performing minimization step: 386. Total energy = 19943.8173 kcal/mol (19929.3641 without restraints) Performing minimization step: 387. Total energy = 19919.6144 kcal/mol (19905.1701 without restraints) Performing minimization step: 388. Total energy = 19895.4789 kcal/mol (19881.0434 without restraints) Performing minimization step: 389. Total energy = 19871.4107 kcal/mol (19856.9841 without restraints) Performing minimization step: 390. Total energy = 19847.4092 kcal/mol (19832.9913 without restraints) Performing minimization step: 391. Total energy = 19823.4745 kcal/mol (19809.0653 without restraints) Performing minimization step: 392. Total energy = 19799.6057 kcal/mol (19785.2053 without restraints) Performing minimization step: 393. Total energy = 19775.8031 kcal/mol (19761.4114 without restraints) Performing minimization step: 394. Total energy = 19752.0656 kcal/mol (19737.6823 without restraints) Performing minimization step: 395. Total energy = 19728.3933 kcal/mol (19714.0186 without restraints) Performing minimization step: 396. Total energy = 19704.7852 kcal/mol (19690.4191 without restraints) Performing minimization step: 397. Total energy = 19681.2411 kcal/mol (19666.8834 without restraints) Performing minimization step: 398. Total energy = 19657.7613 kcal/mol (19643.4121 without restraints) Performing minimization step: 399. Total energy = 19634.3449 kcal/mol (19620.0041 without restraints) Performing minimization step: 400. Total energy = 19610.9914 kcal/mol (19596.6589 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 401. Total energy = 19587.7019 kcal/mol (19573.3779 without restraints) Performing minimization step: 402. Total energy = 19564.4746 kcal/mol (19550.1587 without restraints) Performing minimization step: 403. Total energy = 19541.3095 kcal/mol (19527.0019 without restraints) Performing minimization step: 404. Total energy = 19518.2064 kcal/mol (19503.9071 without restraints) Performing minimization step: 405. Total energy = 19495.1650 kcal/mol (19480.8738 without restraints) Performing minimization step: 406. Total energy = 19472.1850 kcal/mol (19457.9020 without restraints) Performing minimization step: 407. Total energy = 19449.2656 kcal/mol (19434.9908 without restraints) Performing minimization step: 408. Total energy = 19426.4079 kcal/mol (19412.1411 without restraints) Performing minimization step: 409. Total energy = 19403.6102 kcal/mol (19389.3514 without restraints) Performing minimization step: 410. Total energy = 19380.8728 kcal/mol (19366.6221 without restraints) Performing minimization step: 411. Total energy = 19358.1950 kcal/mol (19343.9523 without restraints) Performing minimization step: 412. Total energy = 19335.5770 kcal/mol (19321.3422 without restraints) Performing minimization step: 413. Total energy = 19313.0184 kcal/mol (19298.7916 without restraints) Performing minimization step: 414. Total energy = 19290.5188 kcal/mol (19276.2999 without restraints) Performing minimization step: 415. Total energy = 19268.0779 kcal/mol (19253.8669 without restraints) Performing minimization step: 416. Total energy = 19245.6949 kcal/mol (19231.4916 without restraints) Performing minimization step: 417. Total energy = 19223.3705 kcal/mol (19209.1751 without restraints) Performing minimization step: 418. Total energy = 19201.1042 kcal/mol (19186.9165 without restraints) Performing minimization step: 419. Total energy = 19178.8956 kcal/mol (19164.7156 without restraints) Performing minimization step: 420. Total energy = 19156.7443 kcal/mol (19142.5721 without restraints) Performing minimization step: 421. Total energy = 19134.6500 kcal/mol (19120.4854 without restraints) Performing minimization step: 422. Total energy = 19112.6132 kcal/mol (19098.4563 without restraints) Performing minimization step: 423. Total energy = 19090.6331 kcal/mol (19076.4838 without restraints) Performing minimization step: 424. Total energy = 19068.7091 kcal/mol (19054.5674 without restraints) Performing minimization step: 425. Total energy = 19046.8414 kcal/mol (19032.7072 without restraints) Performing minimization step: 426. Total energy = 19025.0293 kcal/mol (19010.9026 without restraints) Performing minimization step: 427. Total energy = 19003.2731 kcal/mol (18989.1540 without restraints) Performing minimization step: 428. Total energy = 18981.5723 kcal/mol (18967.4607 without restraints) Performing minimization step: 429. Total energy = 18959.9264 kcal/mol (18945.8222 without restraints) Performing minimization step: 430. Total energy = 18938.3356 kcal/mol (18924.2389 without restraints) Performing minimization step: 431. Total energy = 18916.7995 kcal/mol (18902.7101 without restraints) Performing minimization step: 432. Total energy = 18895.3179 kcal/mol (18881.2360 without restraints) Performing minimization step: 433. Total energy = 18873.8909 kcal/mol (18859.8163 without restraints) Performing minimization step: 434. Total energy = 18852.5179 kcal/mol (18838.4507 without restraints) Performing minimization step: 435. Total energy = 18831.1984 kcal/mol (18817.1383 without restraints) Performing minimization step: 436. Total energy = 18809.9325 kcal/mol (18795.8799 without restraints) Performing minimization step: 437. Total energy = 18788.7199 kcal/mol (18774.6745 without restraints) Performing minimization step: 438. Total energy = 18767.5607 kcal/mol (18753.5225 without restraints) Performing minimization step: 439. Total energy = 18746.4540 kcal/mol (18732.4231 without restraints) Performing minimization step: 440. Total energy = 18725.4002 kcal/mol (18711.3765 without restraints) Performing minimization step: 441. Total energy = 18704.3990 kcal/mol (18690.3822 without restraints) Performing minimization step: 442. Total energy = 18683.4499 kcal/mol (18669.4404 without restraints) Performing minimization step: 443. Total energy = 18662.5530 kcal/mol (18648.5506 without restraints) Performing minimization step: 444. Total energy = 18641.7081 kcal/mol (18627.7129 without restraints) Performing minimization step: 445. Total energy = 18620.9146 kcal/mol (18606.9264 without restraints) Performing minimization step: 446. Total energy = 18600.1721 kcal/mol (18586.1910 without restraints) Performing minimization step: 447. Total energy = 18579.4815 kcal/mol (18565.5075 without restraints) Performing minimization step: 448. Total energy = 18558.8417 kcal/mol (18544.8746 without restraints) Performing minimization step: 449. Total energy = 18538.2527 kcal/mol (18524.2925 without restraints) Performing minimization step: 450. Total energy = 18517.7142 kcal/mol (18503.7610 without restraints) Performing minimization step: 451. Total energy = 18497.2258 kcal/mol (18483.2795 without restraints) Performing minimization step: 452. Total energy = 18476.7882 kcal/mol (18462.8489 without restraints) Performing minimization step: 453. Total energy = 18456.4008 kcal/mol (18442.4682 without restraints) Performing minimization step: 454. Total energy = 18436.0627 kcal/mol (18422.1371 without restraints) Performing minimization step: 455. Total energy = 18415.7747 kcal/mol (18401.8560 without restraints) Performing minimization step: 456. Total energy = 18395.5363 kcal/mol (18381.6243 without restraints) Performing minimization step: 457. Total energy = 18375.3466 kcal/mol (18361.4413 without restraints) Performing minimization step: 458. Total energy = 18355.2064 kcal/mol (18341.3080 without restraints) Performing minimization step: 459. Total energy = 18335.1148 kcal/mol (18321.2232 without restraints) Performing minimization step: 460. Total energy = 18315.0729 kcal/mol (18301.1881 without restraints) Performing minimization step: 461. Total energy = 18295.0790 kcal/mol (18281.2008 without restraints) Performing minimization step: 462. Total energy = 18275.1339 kcal/mol (18261.2625 without restraints) Performing minimization step: 463. Total energy = 18255.2365 kcal/mol (18241.3716 without restraints) Performing minimization step: 464. Total energy = 18235.3870 kcal/mol (18221.5290 without restraints) Performing minimization step: 465. Total energy = 18215.5856 kcal/mol (18201.7342 without restraints) Performing minimization step: 466. Total energy = 18195.8321 kcal/mol (18181.9872 without restraints) Performing minimization step: 467. Total energy = 18176.1252 kcal/mol (18162.2870 without restraints) Performing minimization step: 468. Total energy = 18156.4663 kcal/mol (18142.6346 without restraints) Performing minimization step: 469. Total energy = 18136.8545 kcal/mol (18123.0295 without restraints) Performing minimization step: 470. Total energy = 18117.2895 kcal/mol (18103.4709 without restraints) Performing minimization step: 471. Total energy = 18097.7719 kcal/mol (18083.9599 without restraints) Performing minimization step: 472. Total energy = 18078.3009 kcal/mol (18064.4954 without restraints) Performing minimization step: 473. Total energy = 18058.8761 kcal/mol (18045.0771 without restraints) Performing minimization step: 474. Total energy = 18039.4977 kcal/mol (18025.7052 without restraints) Performing minimization step: 475. Total energy = 18020.1652 kcal/mol (18006.3790 without restraints) Performing minimization step: 476. Total energy = 18000.8789 kcal/mol (17987.0993 without restraints) Performing minimization step: 477. Total energy = 17981.6388 kcal/mol (17967.8656 without restraints) Performing minimization step: 478. Total energy = 17962.4443 kcal/mol (17948.6776 without restraints) Performing minimization step: 479. Total energy = 17943.2955 kcal/mol (17929.5353 without restraints) Performing minimization step: 480. Total energy = 17924.1924 kcal/mol (17910.4385 without restraints) Performing minimization step: 481. Total energy = 17905.1341 kcal/mol (17891.3864 without restraints) Performing minimization step: 482. Total energy = 17886.1205 kcal/mol (17872.3793 without restraints) Performing minimization step: 483. Total energy = 17867.1526 kcal/mol (17853.4177 without restraints) Performing minimization step: 484. Total energy = 17848.2292 kcal/mol (17834.5006 without restraints) Performing minimization step: 485. Total energy = 17829.3505 kcal/mol (17815.6282 without restraints) Performing minimization step: 486. Total energy = 17810.5164 kcal/mol (17796.8004 without restraints) Performing minimization step: 487. Total energy = 17791.7257 kcal/mol (17778.0157 without restraints) Performing minimization step: 488. Total energy = 17772.9796 kcal/mol (17759.2761 without restraints) Performing minimization step: 489. Total energy = 17754.2780 kcal/mol (17740.5806 without restraints) Performing minimization step: 490. Total energy = 17735.6202 kcal/mol (17721.9292 without restraints) Performing minimization step: 491. Total energy = 17717.0064 kcal/mol (17703.3215 without restraints) Performing minimization step: 492. Total energy = 17698.4358 kcal/mol (17684.7571 without restraints) Performing minimization step: 493. Total energy = 17679.9090 kcal/mol (17666.2364 without restraints) Performing minimization step: 494. Total energy = 17661.4251 kcal/mol (17647.7587 without restraints) Performing minimization step: 495. Total energy = 17642.9851 kcal/mol (17629.3251 without restraints) Performing minimization step: 496. Total energy = 17624.5877 kcal/mol (17610.9334 without restraints) Performing minimization step: 497. Total energy = 17606.2330 kcal/mol (17592.5849 without restraints) Performing minimization step: 498. Total energy = 17587.9216 kcal/mol (17574.2796 without restraints) Performing minimization step: 499. Total energy = 17569.6517 kcal/mol (17556.0159 without restraints) Performing minimization step: 500. Total energy = 17551.4252 kcal/mol (17537.7952 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 501. Total energy = 17533.2411 kcal/mol (17519.6173 without restraints) Performing minimization step: 502. Total energy = 17515.0986 kcal/mol (17501.4809 without restraints) Performing minimization step: 503. Total energy = 17496.9983 kcal/mol (17483.3866 without restraints) Performing minimization step: 504. Total energy = 17478.9404 kcal/mol (17465.3346 without restraints) Performing minimization step: 505. Total energy = 17460.9242 kcal/mol (17447.3245 without restraints) Performing minimization step: 506. Total energy = 17442.9500 kcal/mol (17429.3562 without restraints) Performing minimization step: 507. Total energy = 17425.0171 kcal/mol (17411.4293 without restraints) Performing minimization step: 508. Total energy = 17407.1257 kcal/mol (17393.5438 without restraints) Performing minimization step: 509. Total energy = 17389.2753 kcal/mol (17375.6993 without restraints) Performing minimization step: 510. Total energy = 17371.4662 kcal/mol (17357.8962 without restraints) Performing minimization step: 511. Total energy = 17353.6978 kcal/mol (17340.1337 without restraints) Performing minimization step: 512. Total energy = 17335.9708 kcal/mol (17322.4126 without restraints) Performing minimization step: 513. Total energy = 17318.2847 kcal/mol (17304.7323 without restraints) Performing minimization step: 514. Total energy = 17300.6391 kcal/mol (17287.0927 without restraints) Performing minimization step: 515. Total energy = 17283.0339 kcal/mol (17269.4934 without restraints) Performing minimization step: 516. Total energy = 17265.4693 kcal/mol (17251.9344 without restraints) Performing minimization step: 517. Total energy = 17247.9444 kcal/mol (17234.4154 without restraints) Performing minimization step: 518. Total energy = 17230.4595 kcal/mol (17216.9362 without restraints) Performing minimization step: 519. Total energy = 17213.0152 kcal/mol (17199.4978 without restraints) Performing minimization step: 520. Total energy = 17195.6103 kcal/mol (17182.0985 without restraints) Performing minimization step: 521. Total energy = 17178.2454 kcal/mol (17164.7395 without restraints) Performing minimization step: 522. Total energy = 17160.9206 kcal/mol (17147.4205 without restraints) Performing minimization step: 523. Total energy = 17143.6347 kcal/mol (17130.1403 without restraints) Performing minimization step: 524. Total energy = 17126.3885 kcal/mol (17112.8998 without restraints) Performing minimization step: 525. Total energy = 17109.1815 kcal/mol (17095.6986 without restraints) Performing minimization step: 526. Total energy = 17092.0138 kcal/mol (17078.5365 without restraints) Performing minimization step: 527. Total energy = 17074.8848 kcal/mol (17061.4132 without restraints) Performing minimization step: 528. Total energy = 17057.7950 kcal/mol (17044.3291 without restraints) Performing minimization step: 529. Total energy = 17040.7444 kcal/mol (17027.2842 without restraints) Performing minimization step: 530. Total energy = 17023.7323 kcal/mol (17010.2778 without restraints) Performing minimization step: 531. Total energy = 17006.7585 kcal/mol (16993.3095 without restraints) Performing minimization step: 532. Total energy = 16989.8231 kcal/mol (16976.3798 without restraints) Performing minimization step: 533. Total energy = 16972.9260 kcal/mol (16959.4883 without restraints) Performing minimization step: 534. Total energy = 16956.0675 kcal/mol (16942.6354 without restraints) Performing minimization step: 535. Total energy = 16939.2470 kcal/mol (16925.8205 without restraints) Performing minimization step: 536. Total energy = 16922.4647 kcal/mol (16909.0438 without restraints) Performing minimization step: 537. Total energy = 16905.7201 kcal/mol (16892.3048 without restraints) Performing minimization step: 538. Total energy = 16889.0134 kcal/mol (16875.6036 without restraints) Performing minimization step: 539. Total energy = 16872.3444 kcal/mol (16858.9402 without restraints) Performing minimization step: 540. Total energy = 16855.7124 kcal/mol (16842.3136 without restraints) Performing minimization step: 541. Total energy = 16839.1188 kcal/mol (16825.7256 without restraints) Performing minimization step: 542. Total energy = 16822.5621 kcal/mol (16809.1744 without restraints) Performing minimization step: 543. Total energy = 16806.0429 kcal/mol (16792.6607 without restraints) Performing minimization step: 544. Total energy = 16789.5602 kcal/mol (16776.1836 without restraints) Performing minimization step: 545. Total energy = 16773.1150 kcal/mol (16759.7437 without restraints) Performing minimization step: 546. Total energy = 16756.7065 kcal/mol (16743.3407 without restraints) Performing minimization step: 547. Total energy = 16740.3344 kcal/mol (16726.9742 without restraints) Performing minimization step: 548. Total energy = 16723.9995 kcal/mol (16710.6446 without restraints) Performing minimization step: 549. Total energy = 16707.7011 kcal/mol (16694.3517 without restraints) Performing minimization step: 550. Total energy = 16691.4391 kcal/mol (16678.0950 without restraints) Performing minimization step: 551. Total energy = 16675.2134 kcal/mol (16661.8746 without restraints) Performing minimization step: 552. Total energy = 16659.0238 kcal/mol (16645.6905 without restraints) Performing minimization step: 553. Total energy = 16642.8704 kcal/mol (16629.5425 without restraints) Performing minimization step: 554. Total energy = 16626.7532 kcal/mol (16613.4307 without restraints) Performing minimization step: 555. Total energy = 16610.6718 kcal/mol (16597.3546 without restraints) Performing minimization step: 556. Total energy = 16594.6264 kcal/mol (16581.3146 without restraints) Performing minimization step: 557. Total energy = 16578.6162 kcal/mol (16565.3095 without restraints) Performing minimization step: 558. Total energy = 16562.6421 kcal/mol (16549.3410 without restraints) Performing minimization step: 559. Total energy = 16546.7036 kcal/mol (16533.4077 without restraints) Performing minimization step: 560. Total energy = 16530.7999 kcal/mol (16517.5093 without restraints) Performing minimization step: 561. Total energy = 16514.9322 kcal/mol (16501.6469 without restraints) Performing minimization step: 562. Total energy = 16499.0994 kcal/mol (16485.8194 without restraints) Performing minimization step: 563. Total energy = 16483.3014 kcal/mol (16470.0265 without restraints) Performing minimization step: 564. Total energy = 16467.5387 kcal/mol (16454.2693 without restraints) Performing minimization step: 565. Total energy = 16451.8107 kcal/mol (16438.5464 without restraints) Performing minimization step: 566. Total energy = 16436.1178 kcal/mol (16422.8588 without restraints) Performing minimization step: 567. Total energy = 16420.4591 kcal/mol (16407.2053 without restraints) Performing minimization step: 568. Total energy = 16404.8349 kcal/mol (16391.5861 without restraints) Performing minimization step: 569. Total energy = 16389.2451 kcal/mol (16376.0016 without restraints) Performing minimization step: 570. Total energy = 16373.6899 kcal/mol (16360.4517 without restraints) Performing minimization step: 571. Total energy = 16358.1696 kcal/mol (16344.9366 without restraints) Performing minimization step: 572. Total energy = 16342.6828 kcal/mol (16329.4549 without restraints) Performing minimization step: 573. Total energy = 16327.2299 kcal/mol (16314.0072 without restraints) Performing minimization step: 574. Total energy = 16311.8114 kcal/mol (16298.5941 without restraints) Performing minimization step: 575. Total energy = 16296.4269 kcal/mol (16283.2145 without restraints) Performing minimization step: 576. Total energy = 16281.0759 kcal/mol (16267.8686 without restraints) Performing minimization step: 577. Total energy = 16265.7585 kcal/mol (16252.5564 without restraints) Performing minimization step: 578. Total energy = 16250.4745 kcal/mol (16237.2775 without restraints) Performing minimization step: 579. Total energy = 16235.2242 kcal/mol (16222.0323 without restraints) Performing minimization step: 580. Total energy = 16220.0074 kcal/mol (16206.8206 without restraints) Performing minimization step: 581. Total energy = 16204.8242 kcal/mol (16191.6425 without restraints) Performing minimization step: 582. Total energy = 16189.6737 kcal/mol (16176.4970 without restraints) Performing minimization step: 583. Total energy = 16174.5565 kcal/mol (16161.3850 without restraints) Performing minimization step: 584. Total energy = 16159.4722 kcal/mol (16146.3056 without restraints) Performing minimization step: 585. Total energy = 16144.4208 kcal/mol (16131.2592 without restraints) Performing minimization step: 586. Total energy = 16129.4020 kcal/mol (16116.2454 without restraints) Performing minimization step: 587. Total energy = 16114.4163 kcal/mol (16101.2649 without restraints) Performing minimization step: 588. Total energy = 16099.4631 kcal/mol (16086.3166 without restraints) Performing minimization step: 589. Total energy = 16084.5423 kcal/mol (16071.4008 without restraints) Performing minimization step: 590. Total energy = 16069.6544 kcal/mol (16056.5179 without restraints) Performing minimization step: 591. Total energy = 16054.7983 kcal/mol (16041.6666 without restraints) Performing minimization step: 592. Total energy = 16039.9742 kcal/mol (16026.8476 without restraints) Performing minimization step: 593. Total energy = 16025.1829 kcal/mol (16012.0613 without restraints) Performing minimization step: 594. Total energy = 16010.4230 kcal/mol (15997.3063 without restraints) Performing minimization step: 595. Total energy = 15995.6951 kcal/mol (15982.5833 without restraints) Performing minimization step: 596. Total energy = 15980.9990 kcal/mol (15967.8922 without restraints) Performing minimization step: 597. Total energy = 15966.3348 kcal/mol (15953.2329 without restraints) Performing minimization step: 598. Total energy = 15951.7023 kcal/mol (15938.6053 without restraints) Performing minimization step: 599. Total energy = 15937.1014 kcal/mol (15924.0093 without restraints) Performing minimization step: 600. Total energy = 15922.5322 kcal/mol (15909.4450 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 601. Total energy = 15907.9945 kcal/mol (15894.9122 without restraints) Performing minimization step: 602. Total energy = 15893.4877 kcal/mol (15880.4103 without restraints) Performing minimization step: 603. Total energy = 15879.0122 kcal/mol (15865.9396 without restraints) Performing minimization step: 604. Total energy = 15864.5681 kcal/mol (15851.5004 without restraints) Performing minimization step: 605. Total energy = 15850.1555 kcal/mol (15837.0928 without restraints) Performing minimization step: 606. Total energy = 15835.7737 kcal/mol (15822.7157 without restraints) Performing minimization step: 607. Total energy = 15821.4218 kcal/mol (15808.3687 without restraints) Performing minimization step: 608. Total energy = 15807.1013 kcal/mol (15794.0530 without restraints) Performing minimization step: 609. Total energy = 15792.8115 kcal/mol (15779.7680 without restraints) Performing minimization step: 610. Total energy = 15778.5523 kcal/mol (15765.5134 without restraints) Performing minimization step: 611. Total energy = 15764.3240 kcal/mol (15751.2902 without restraints) Performing minimization step: 612. Total energy = 15750.1260 kcal/mol (15737.0971 without restraints) Performing minimization step: 613. Total energy = 15735.9581 kcal/mol (15722.9337 without restraints) Performing minimization step: 614. Total energy = 15721.8204 kcal/mol (15708.8008 without restraints) Performing minimization step: 615. Total energy = 15707.7137 kcal/mol (15694.6990 without restraints) Performing minimization step: 616. Total energy = 15693.6362 kcal/mol (15680.6263 without restraints) Performing minimization step: 617. Total energy = 15679.5891 kcal/mol (15666.5837 without restraints) Performing minimization step: 618. Total energy = 15665.5719 kcal/mol (15652.5713 without restraints) Performing minimization step: 619. Total energy = 15651.5842 kcal/mol (15638.5883 without restraints) Performing minimization step: 620. Total energy = 15637.6260 kcal/mol (15624.6349 without restraints) Performing minimization step: 621. Total energy = 15623.6977 kcal/mol (15610.7112 without restraints) Performing minimization step: 622. Total energy = 15609.7987 kcal/mol (15596.8167 without restraints) Performing minimization step: 623. Total energy = 15595.9286 kcal/mol (15582.9514 without restraints) Performing minimization step: 624. Total energy = 15582.0892 kcal/mol (15569.1167 without restraints) Performing minimization step: 625. Total energy = 15568.2783 kcal/mol (15555.3105 without restraints) Performing minimization step: 626. Total energy = 15554.4966 kcal/mol (15541.5334 without restraints) Performing minimization step: 627. Total energy = 15540.7444 kcal/mol (15527.7859 without restraints) Performing minimization step: 628. Total energy = 15527.0210 kcal/mol (15514.0672 without restraints) Performing minimization step: 629. Total energy = 15513.3264 kcal/mol (15500.3771 without restraints) Performing minimization step: 630. Total energy = 15499.6606 kcal/mol (15486.7160 without restraints) Performing minimization step: 631. Total energy = 15486.0236 kcal/mol (15473.0836 without restraints) Performing minimization step: 632. Total energy = 15472.4155 kcal/mol (15459.4800 without restraints) Performing minimization step: 633. Total energy = 15458.8364 kcal/mol (15445.9056 without restraints) Performing minimization step: 634. Total energy = 15445.2853 kcal/mol (15432.3588 without restraints) Performing minimization step: 635. Total energy = 15431.7626 kcal/mol (15418.8410 without restraints) Performing minimization step: 636. Total energy = 15418.2685 kcal/mol (15405.3514 without restraints) Performing minimization step: 637. Total energy = 15404.8026 kcal/mol (15391.8901 without restraints) Performing minimization step: 638. Total energy = 15391.3652 kcal/mol (15378.4572 without restraints) Performing minimization step: 639. Total energy = 15377.9552 kcal/mol (15365.0518 without restraints) Performing minimization step: 640. Total energy = 15364.5739 kcal/mol (15351.6750 without restraints) Performing minimization step: 641. Total energy = 15351.2200 kcal/mol (15338.3256 without restraints) Performing minimization step: 642. Total energy = 15337.8945 kcal/mol (15325.0047 without restraints) Performing minimization step: 643. Total energy = 15324.5966 kcal/mol (15311.7113 without restraints) Performing minimization step: 644. Total energy = 15311.3262 kcal/mol (15298.4454 without restraints) Performing minimization step: 645. Total energy = 15298.0837 kcal/mol (15285.2073 without restraints) Performing minimization step: 646. Total energy = 15284.8687 kcal/mol (15271.9968 without restraints) Performing minimization step: 647. Total energy = 15271.6813 kcal/mol (15258.8139 without restraints) Performing minimization step: 648. Total energy = 15258.5211 kcal/mol (15245.6582 without restraints) Performing minimization step: 649. Total energy = 15245.3878 kcal/mol (15232.5294 without restraints) Performing minimization step: 650. Total energy = 15232.2823 kcal/mol (15219.4284 without restraints) Performing minimization step: 651. Total energy = 15219.2037 kcal/mol (15206.3543 without restraints) Performing minimization step: 652. Total energy = 15206.1517 kcal/mol (15193.3067 without restraints) Performing minimization step: 653. Total energy = 15193.1273 kcal/mol (15180.2866 without restraints) Performing minimization step: 654. Total energy = 15180.1299 kcal/mol (15167.2937 without restraints) Performing minimization step: 655. Total energy = 15167.1588 kcal/mol (15154.3270 without restraints) Performing minimization step: 656. Total energy = 15154.2151 kcal/mol (15141.3875 without restraints) Performing minimization step: 657. Total energy = 15141.2976 kcal/mol (15128.4746 without restraints) Performing minimization step: 658. Total energy = 15128.4070 kcal/mol (15115.5886 without restraints) Performing minimization step: 659. Total energy = 15115.5434 kcal/mol (15102.7291 without restraints) Performing minimization step: 660. Total energy = 15102.7055 kcal/mol (15089.8957 without restraints) Performing minimization step: 661. Total energy = 15089.8938 kcal/mol (15077.0884 without restraints) Performing minimization step: 662. Total energy = 15077.1086 kcal/mol (15064.3074 without restraints) Performing minimization step: 663. Total energy = 15064.3496 kcal/mol (15051.5528 without restraints) Performing minimization step: 664. Total energy = 15051.6165 kcal/mol (15038.8241 without restraints) Performing minimization step: 665. Total energy = 15038.9099 kcal/mol (15026.1218 without restraints) Performing minimization step: 666. Total energy = 15026.2290 kcal/mol (15013.4453 without restraints) Performing minimization step: 667. Total energy = 15013.5740 kcal/mol (15000.7946 without restraints) Performing minimization step: 668. Total energy = 15000.9449 kcal/mol (14988.1697 without restraints) Performing minimization step: 669. Total energy = 14988.3413 kcal/mol (14975.5704 without restraints) Performing minimization step: 670. Total energy = 14975.7629 kcal/mol (14962.9964 without restraints) Performing minimization step: 671. Total energy = 14963.2107 kcal/mol (14950.4484 without restraints) Performing minimization step: 672. Total energy = 14950.6840 kcal/mol (14937.9261 without restraints) Performing minimization step: 673. Total energy = 14938.1828 kcal/mol (14925.4291 without restraints) Performing minimization step: 674. Total energy = 14925.7065 kcal/mol (14912.9568 without restraints) Performing minimization step: 675. Total energy = 14913.2560 kcal/mol (14900.5110 without restraints) Performing minimization step: 676. Total energy = 14900.8307 kcal/mol (14888.0895 without restraints) Performing minimization step: 677. Total energy = 14888.4302 kcal/mol (14875.6936 without restraints) Performing minimization step: 678. Total energy = 14876.0555 kcal/mol (14863.3230 without restraints) Performing minimization step: 679. Total energy = 14863.7053 kcal/mol (14850.9772 without restraints) Performing minimization step: 680. Total energy = 14851.3798 kcal/mol (14838.6557 without restraints) Performing minimization step: 681. Total energy = 14839.0795 kcal/mol (14826.3597 without restraints) Performing minimization step: 682. Total energy = 14826.8037 kcal/mol (14814.0881 without restraints) Performing minimization step: 683. Total energy = 14814.5526 kcal/mol (14801.8413 without restraints) Performing minimization step: 684. Total energy = 14802.3269 kcal/mol (14789.6196 without restraints) Performing minimization step: 685. Total energy = 14790.1246 kcal/mol (14777.4216 without restraints) Performing minimization step: 686. Total energy = 14777.9472 kcal/mol (14765.2484 without restraints) Performing minimization step: 687. Total energy = 14765.7941 kcal/mol (14753.0995 without restraints) Performing minimization step: 688. Total energy = 14753.6653 kcal/mol (14740.9749 without restraints) Performing minimization step: 689. Total energy = 14741.5608 kcal/mol (14728.8744 without restraints) Performing minimization step: 690. Total energy = 14729.4805 kcal/mol (14716.7983 without restraints) Performing minimization step: 691. Total energy = 14717.4239 kcal/mol (14704.7459 without restraints) Performing minimization step: 692. Total energy = 14705.3919 kcal/mol (14692.7180 without restraints) Performing minimization step: 693. Total energy = 14693.3840 kcal/mol (14680.7143 without restraints) Performing minimization step: 694. Total energy = 14681.3995 kcal/mol (14668.7339 without restraints) Performing minimization step: 695. Total energy = 14669.4393 kcal/mol (14656.7778 without restraints) Performing minimization step: 696. Total energy = 14657.5023 kcal/mol (14644.8449 without restraints) Performing minimization step: 697. Total energy = 14645.5894 kcal/mol (14632.9362 without restraints) Performing minimization step: 698. Total energy = 14633.7008 kcal/mol (14621.0516 without restraints) Performing minimization step: 699. Total energy = 14621.8349 kcal/mol (14609.1898 without restraints) Performing minimization step: 700. Total energy = 14609.9927 kcal/mol (14597.3517 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 701. Total energy = 14598.1736 kcal/mol (14585.5366 without restraints) Performing minimization step: 702. Total energy = 14586.3776 kcal/mol (14573.7447 without restraints) Performing minimization step: 703. Total energy = 14574.6049 kcal/mol (14561.9761 without restraints) Performing minimization step: 704. Total energy = 14562.8558 kcal/mol (14550.2311 without restraints) Performing minimization step: 705. Total energy = 14551.1295 kcal/mol (14538.5086 without restraints) Performing minimization step: 706. Total energy = 14539.4266 kcal/mol (14526.8098 without restraints) Performing minimization step: 707. Total energy = 14527.7465 kcal/mol (14515.1339 without restraints) Performing minimization step: 708. Total energy = 14516.0895 kcal/mol (14503.4810 without restraints) Performing minimization step: 709. Total energy = 14504.4556 kcal/mol (14491.8510 without restraints) Performing minimization step: 710. Total energy = 14492.8435 kcal/mol (14480.2428 without restraints) Performing minimization step: 711. Total energy = 14481.2551 kcal/mol (14468.6584 without restraints) Performing minimization step: 712. Total energy = 14469.6884 kcal/mol (14457.0957 without restraints) Performing minimization step: 713. Total energy = 14458.1445 kcal/mol (14445.5559 without restraints) Performing minimization step: 714. Total energy = 14446.6234 kcal/mol (14434.0388 without restraints) Performing minimization step: 715. Total energy = 14435.1247 kcal/mol (14422.5441 without restraints) Performing minimization step: 716. Total energy = 14423.6482 kcal/mol (14411.0715 without restraints) Performing minimization step: 717. Total energy = 14412.1939 kcal/mol (14399.6212 without restraints) Performing minimization step: 718. Total energy = 14400.7620 kcal/mol (14388.1933 without restraints) Performing minimization step: 719. Total energy = 14389.3528 kcal/mol (14376.7882 without restraints) Performing minimization step: 720. Total energy = 14377.9654 kcal/mol (14365.4046 without restraints) Performing minimization step: 721. Total energy = 14366.6000 kcal/mol (14354.0431 without restraints) Performing minimization step: 722. Total energy = 14355.2562 kcal/mol (14342.7032 without restraints) Performing minimization step: 723. Total energy = 14343.9343 kcal/mol (14331.3852 without restraints) Performing minimization step: 724. Total energy = 14332.6343 kcal/mol (14320.0892 without restraints) Performing minimization step: 725. Total energy = 14321.3560 kcal/mol (14308.8148 without restraints) Performing minimization step: 726. Total energy = 14310.0993 kcal/mol (14297.5620 without restraints) Performing minimization step: 727. Total energy = 14298.8638 kcal/mol (14286.3305 without restraints) Performing minimization step: 728. Total energy = 14287.6506 kcal/mol (14275.1210 without restraints) Performing minimization step: 729. Total energy = 14276.4587 kcal/mol (14263.9330 without restraints) Performing minimization step: 730. Total energy = 14265.2881 kcal/mol (14252.7663 without restraints) Performing minimization step: 731. Total energy = 14254.1386 kcal/mol (14241.6207 without restraints) Performing minimization step: 732. Total energy = 14243.0109 kcal/mol (14230.4969 without restraints) Performing minimization step: 733. Total energy = 14231.9045 kcal/mol (14219.3943 without restraints) Performing minimization step: 734. Total energy = 14220.8193 kcal/mol (14208.3130 without restraints) Performing minimization step: 735. Total energy = 14209.7548 kcal/mol (14197.2523 without restraints) Performing minimization step: 736. Total energy = 14198.7115 kcal/mol (14186.2130 without restraints) Performing minimization step: 737. Total energy = 14187.6894 kcal/mol (14175.1946 without restraints) Performing minimization step: 738. Total energy = 14176.6882 kcal/mol (14164.1973 without restraints) Performing minimization step: 739. Total energy = 14165.7078 kcal/mol (14153.2207 without restraints) Performing minimization step: 740. Total energy = 14154.7481 kcal/mol (14142.2648 without restraints) Performing minimization step: 741. Total energy = 14143.8093 kcal/mol (14131.3298 without restraints) Performing minimization step: 742. Total energy = 14132.8909 kcal/mol (14120.4153 without restraints) Performing minimization step: 743. Total energy = 14121.9927 kcal/mol (14109.5208 without restraints) Performing minimization step: 744. Total energy = 14111.1151 kcal/mol (14098.6471 without restraints) Performing minimization step: 745. Total energy = 14100.2584 kcal/mol (14087.7941 without restraints) Performing minimization step: 746. Total energy = 14089.4224 kcal/mol (14076.9620 without restraints) Performing minimization step: 747. Total energy = 14078.6066 kcal/mol (14066.1499 without restraints) Performing minimization step: 748. Total energy = 14067.8113 kcal/mol (14055.3584 without restraints) Performing minimization step: 749. Total energy = 14057.0360 kcal/mol (14044.5869 without restraints) Performing minimization step: 750. Total energy = 14046.2808 kcal/mol (14033.8353 without restraints) Performing minimization step: 751. Total energy = 14035.5458 kcal/mol (14023.1041 without restraints) Performing minimization step: 752. Total energy = 14024.8304 kcal/mol (14012.3924 without restraints) Performing minimization step: 753. Total energy = 14014.1353 kcal/mol (14001.7012 without restraints) Performing minimization step: 754. Total energy = 14003.4609 kcal/mol (13991.0304 without restraints) Performing minimization step: 755. Total energy = 13992.8058 kcal/mol (13980.3791 without restraints) Performing minimization step: 756. Total energy = 13982.1705 kcal/mol (13969.7475 without restraints) Performing minimization step: 757. Total energy = 13971.5551 kcal/mol (13959.1360 without restraints) Performing minimization step: 758. Total energy = 13960.9592 kcal/mol (13948.5437 without restraints) Performing minimization step: 759. Total energy = 13950.3829 kcal/mol (13937.9712 without restraints) Performing minimization step: 760. Total energy = 13939.8264 kcal/mol (13927.4183 without restraints) Performing minimization step: 761. Total energy = 13929.2887 kcal/mol (13916.8843 without restraints) Performing minimization step: 762. Total energy = 13918.7708 kcal/mol (13906.3702 without restraints) Performing minimization step: 763. Total energy = 13908.2726 kcal/mol (13895.8756 without restraints) Performing minimization step: 764. Total energy = 13897.7936 kcal/mol (13885.4002 without restraints) Performing minimization step: 765. Total energy = 13887.3338 kcal/mol (13874.9441 without restraints) Performing minimization step: 766. Total energy = 13876.8931 kcal/mol (13864.5070 without restraints) Performing minimization step: 767. Total energy = 13866.4716 kcal/mol (13854.0892 without restraints) Performing minimization step: 768. Total energy = 13856.0691 kcal/mol (13843.6902 without restraints) Performing minimization step: 769. Total energy = 13845.6860 kcal/mol (13833.3109 without restraints) Performing minimization step: 770. Total energy = 13835.3215 kcal/mol (13822.9500 without restraints) Performing minimization step: 771. Total energy = 13824.9760 kcal/mol (13812.6083 without restraints) Performing minimization step: 772. Total energy = 13814.6499 kcal/mol (13802.2858 without restraints) Performing minimization step: 773. Total energy = 13804.3413 kcal/mol (13791.9808 without restraints) Performing minimization step: 774. Total energy = 13794.0520 kcal/mol (13781.6951 without restraints) Performing minimization step: 775. Total energy = 13783.7818 kcal/mol (13771.4286 without restraints) Performing minimization step: 776. Total energy = 13773.5301 kcal/mol (13761.1805 without restraints) Performing minimization step: 777. Total energy = 13763.2971 kcal/mol (13750.9510 without restraints) Performing minimization step: 778. Total energy = 13753.0828 kcal/mol (13740.7406 without restraints) Performing minimization step: 779. Total energy = 13742.8872 kcal/mol (13730.5485 without restraints) Performing minimization step: 780. Total energy = 13732.7093 kcal/mol (13720.3740 without restraints) Performing minimization step: 781. Total energy = 13722.5495 kcal/mol (13710.2179 without restraints) Performing minimization step: 782. Total energy = 13712.4087 kcal/mol (13700.0806 without restraints) Performing minimization step: 783. Total energy = 13702.2862 kcal/mol (13689.9617 without restraints) Performing minimization step: 784. Total energy = 13692.1816 kcal/mol (13679.8607 without restraints) Performing minimization step: 785. Total energy = 13682.0955 kcal/mol (13669.7782 without restraints) Performing minimization step: 786. Total energy = 13672.0276 kcal/mol (13659.7138 without restraints) Performing minimization step: 787. Total energy = 13661.9779 kcal/mol (13649.6677 without restraints) Performing minimization step: 788. Total energy = 13651.9460 kcal/mol (13639.6394 without restraints) Performing minimization step: 789. Total energy = 13641.9321 kcal/mol (13629.6290 without restraints) Performing minimization step: 790. Total energy = 13631.9360 kcal/mol (13619.6364 without restraints) Performing minimization step: 791. Total energy = 13621.9575 kcal/mol (13609.6615 without restraints) Performing minimization step: 792. Total energy = 13611.9973 kcal/mol (13599.7050 without restraints) Performing minimization step: 793. Total energy = 13602.0542 kcal/mol (13589.7653 without restraints) Performing minimization step: 794. Total energy = 13592.1290 kcal/mol (13579.8435 without restraints) Performing minimization step: 795. Total energy = 13582.2213 kcal/mol (13569.9394 without restraints) Performing minimization step: 796. Total energy = 13572.3315 kcal/mol (13560.0531 without restraints) Performing minimization step: 797. Total energy = 13562.4589 kcal/mol (13550.1840 without restraints) Performing minimization step: 798. Total energy = 13552.6037 kcal/mol (13540.3324 without restraints) Performing minimization step: 799. Total energy = 13542.7661 kcal/mol (13530.4982 without restraints) Performing minimization step: 800. Total energy = 13532.9457 kcal/mol (13520.6813 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 801. Total energy = 13523.1428 kcal/mol (13510.8819 without restraints) Performing minimization step: 802. Total energy = 13513.3570 kcal/mol (13501.0996 without restraints) Performing minimization step: 803. Total energy = 13503.5886 kcal/mol (13491.3348 without restraints) Performing minimization step: 804. Total energy = 13493.8371 kcal/mol (13481.5866 without restraints) Performing minimization step: 805. Total energy = 13484.1022 kcal/mol (13471.8552 without restraints) Performing minimization step: 806. Total energy = 13474.3847 kcal/mol (13462.1411 without restraints) Performing minimization step: 807. Total energy = 13464.6845 kcal/mol (13452.4445 without restraints) Performing minimization step: 808. Total energy = 13455.0015 kcal/mol (13442.7648 without restraints) Performing minimization step: 809. Total energy = 13445.3349 kcal/mol (13433.1017 without restraints) Performing minimization step: 810. Total energy = 13435.6852 kcal/mol (13423.4555 without restraints) Performing minimization step: 811. Total energy = 13426.0525 kcal/mol (13413.8263 without restraints) Performing minimization step: 812. Total energy = 13416.4364 kcal/mol (13404.2136 without restraints) Performing minimization step: 813. Total energy = 13406.8370 kcal/mol (13394.6176 without restraints) Performing minimization step: 814. Total energy = 13397.2544 kcal/mol (13385.0385 without restraints) Performing minimization step: 815. Total energy = 13387.6883 kcal/mol (13375.4758 without restraints) Performing minimization step: 816. Total energy = 13378.1387 kcal/mol (13365.9298 without restraints) Performing minimization step: 817. Total energy = 13368.6059 kcal/mol (13356.4002 without restraints) Performing minimization step: 818. Total energy = 13359.0890 kcal/mol (13346.8867 without restraints) Performing minimization step: 819. Total energy = 13349.5891 kcal/mol (13337.3904 without restraints) Performing minimization step: 820. Total energy = 13340.1047 kcal/mol (13327.9092 without restraints) Performing minimization step: 821. Total energy = 13330.6372 kcal/mol (13318.4452 without restraints) Performing minimization step: 822. Total energy = 13321.1857 kcal/mol (13308.9970 without restraints) Performing minimization step: 823. Total energy = 13311.7507 kcal/mol (13299.5655 without restraints) Performing minimization step: 824. Total energy = 13302.3315 kcal/mol (13290.1498 without restraints) Performing minimization step: 825. Total energy = 13292.9286 kcal/mol (13280.7501 without restraints) Performing minimization step: 826. Total energy = 13283.5419 kcal/mol (13271.3668 without restraints) Performing minimization step: 827. Total energy = 13274.1713 kcal/mol (13261.9996 without restraints) Performing minimization step: 828. Total energy = 13264.8163 kcal/mol (13252.6480 without restraints) Performing minimization step: 829. Total energy = 13255.4773 kcal/mol (13243.3125 without restraints) Performing minimization step: 830. Total energy = 13246.1545 kcal/mol (13233.9928 without restraints) Performing minimization step: 831. Total energy = 13236.8478 kcal/mol (13224.6895 without restraints) Performing minimization step: 832. Total energy = 13227.5560 kcal/mol (13215.4011 without restraints) Performing minimization step: 833. Total energy = 13218.2806 kcal/mol (13206.1291 without restraints) Performing minimization step: 834. Total energy = 13209.0203 kcal/mol (13196.8721 without restraints) Performing minimization step: 835. Total energy = 13199.7762 kcal/mol (13187.6314 without restraints) Performing minimization step: 836. Total energy = 13190.5476 kcal/mol (13178.4061 without restraints) Performing minimization step: 837. Total energy = 13181.3345 kcal/mol (13169.1961 without restraints) Performing minimization step: 838. Total energy = 13172.1363 kcal/mol (13160.0014 without restraints) Performing minimization step: 839. Total energy = 13162.9543 kcal/mol (13150.8229 without restraints) Performing minimization step: 840. Total energy = 13153.7878 kcal/mol (13141.6597 without restraints) Performing minimization step: 841. Total energy = 13144.6366 kcal/mol (13132.5117 without restraints) Performing minimization step: 842. Total energy = 13135.5010 kcal/mol (13123.3796 without restraints) Performing minimization step: 843. Total energy = 13126.3807 kcal/mol (13114.2624 without restraints) Performing minimization step: 844. Total energy = 13117.2753 kcal/mol (13105.1603 without restraints) Performing minimization step: 845. Total energy = 13108.1848 kcal/mol (13096.0731 without restraints) Performing minimization step: 846. Total energy = 13099.1097 kcal/mol (13087.0013 without restraints) Performing minimization step: 847. Total energy = 13090.0496 kcal/mol (13077.9445 without restraints) Performing minimization step: 848. Total energy = 13081.0052 kcal/mol (13068.9034 without restraints) Performing minimization step: 849. Total energy = 13071.9754 kcal/mol (13059.8769 without restraints) Performing minimization step: 850. Total energy = 13062.9606 kcal/mol (13050.8655 without restraints) Performing minimization step: 851. Total energy = 13053.9608 kcal/mol (13041.8688 without restraints) Performing minimization step: 852. Total energy = 13044.9759 kcal/mol (13032.8873 without restraints) Performing minimization step: 853. Total energy = 13036.0064 kcal/mol (13023.9213 without restraints) Performing minimization step: 854. Total energy = 13027.0513 kcal/mol (13014.9692 without restraints) Performing minimization step: 855. Total energy = 13018.1104 kcal/mol (13006.0316 without restraints) Performing minimization step: 856. Total energy = 13009.1845 kcal/mol (12997.1087 without restraints) Performing minimization step: 857. Total energy = 13000.2730 kcal/mol (12988.2006 without restraints) Performing minimization step: 858. Total energy = 12991.3763 kcal/mol (12979.3072 without restraints) Performing minimization step: 859. Total energy = 12982.4946 kcal/mol (12970.4288 without restraints) Performing minimization step: 860. Total energy = 12973.6271 kcal/mol (12961.5646 without restraints) Performing minimization step: 861. Total energy = 12964.7743 kcal/mol (12952.7149 without restraints) Performing minimization step: 862. Total energy = 12955.9360 kcal/mol (12943.8799 without restraints) Performing minimization step: 863. Total energy = 12947.1125 kcal/mol (12935.0597 without restraints) Performing minimization step: 864. Total energy = 12938.3032 kcal/mol (12926.2536 without restraints) Performing minimization step: 865. Total energy = 12929.5082 kcal/mol (12917.4618 without restraints) Performing minimization step: 866. Total energy = 12920.7274 kcal/mol (12908.6842 without restraints) Performing minimization step: 867. Total energy = 12911.9609 kcal/mol (12899.9209 without restraints) Performing minimization step: 868. Total energy = 12903.2084 kcal/mol (12891.1717 without restraints) Performing minimization step: 869. Total energy = 12894.4703 kcal/mol (12882.4368 without restraints) Performing minimization step: 870. Total energy = 12885.7463 kcal/mol (12873.7161 without restraints) Performing minimization step: 871. Total energy = 12877.0365 kcal/mol (12865.0094 without restraints) Performing minimization step: 872. Total energy = 12868.3410 kcal/mol (12856.3171 without restraints) Performing minimization step: 873. Total energy = 12859.6596 kcal/mol (12847.6390 without restraints) Performing minimization step: 874. Total energy = 12850.9922 kcal/mol (12838.9747 without restraints) Performing minimization step: 875. Total energy = 12842.3383 kcal/mol (12830.3239 without restraints) Performing minimization step: 876. Total energy = 12833.6985 kcal/mol (12821.6874 without restraints) Performing minimization step: 877. Total energy = 12825.0726 kcal/mol (12813.0648 without restraints) Performing minimization step: 878. Total energy = 12816.4607 kcal/mol (12804.4559 without restraints) Performing minimization step: 879. Total energy = 12807.8621 kcal/mol (12795.8606 without restraints) Performing minimization step: 880. Total energy = 12799.2778 kcal/mol (12787.2794 without restraints) Performing minimization step: 881. Total energy = 12790.7073 kcal/mol (12778.7121 without restraints) Performing minimization step: 882. Total energy = 12782.1504 kcal/mol (12770.1584 without restraints) Performing minimization step: 883. Total energy = 12773.6070 kcal/mol (12761.6182 without restraints) Performing minimization step: 884. Total energy = 12765.0772 kcal/mol (12753.0915 without restraints) Performing minimization step: 885. Total energy = 12756.5612 kcal/mol (12744.5787 without restraints) Performing minimization step: 886. Total energy = 12748.0583 kcal/mol (12736.0787 without restraints) Performing minimization step: 887. Total energy = 12739.5688 kcal/mol (12727.5926 without restraints) Performing minimization step: 888. Total energy = 12731.0931 kcal/mol (12719.1201 without restraints) Performing minimization step: 889. Total energy = 12722.6306 kcal/mol (12710.6607 without restraints) Performing minimization step: 890. Total energy = 12714.1815 kcal/mol (12702.2147 without restraints) Performing minimization step: 891. Total energy = 12705.7456 kcal/mol (12693.7819 without restraints) Performing minimization step: 892. Total energy = 12697.3228 kcal/mol (12685.3622 without restraints) Performing minimization step: 893. Total energy = 12688.9141 kcal/mol (12676.9567 without restraints) Performing minimization step: 894. Total energy = 12680.5183 kcal/mol (12668.5640 without restraints) Performing minimization step: 895. Total energy = 12672.1360 kcal/mol (12660.1849 without restraints) Performing minimization step: 896. Total energy = 12663.7669 kcal/mol (12651.8189 without restraints) Performing minimization step: 897. Total energy = 12655.4107 kcal/mol (12643.4659 without restraints) Performing minimization step: 898. Total energy = 12647.0677 kcal/mol (12635.1260 without restraints) Performing minimization step: 899. Total energy = 12638.7379 kcal/mol (12626.7993 without restraints) Performing minimization step: 900. Total energy = 12630.4208 kcal/mol (12618.4853 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 901. Total energy = 12622.1174 kcal/mol (12610.1850 without restraints) Performing minimization step: 902. Total energy = 12613.8268 kcal/mol (12601.8977 without restraints) Performing minimization step: 903. Total energy = 12605.5490 kcal/mol (12593.6229 without restraints) Performing minimization step: 904. Total energy = 12597.2839 kcal/mol (12585.3609 without restraints) Performing minimization step: 905. Total energy = 12589.0318 kcal/mol (12577.1118 without restraints) Performing minimization step: 906. Total energy = 12580.7923 kcal/mol (12568.8754 without restraints) Performing minimization step: 907. Total energy = 12572.5656 kcal/mol (12560.6519 without restraints) Performing minimization step: 908. Total energy = 12564.3517 kcal/mol (12552.4410 without restraints) Performing minimization step: 909. Total energy = 12556.1506 kcal/mol (12544.2430 without restraints) Performing minimization step: 910. Total energy = 12547.9621 kcal/mol (12536.0576 without restraints) Performing minimization step: 911. Total energy = 12539.7862 kcal/mol (12527.8847 without restraints) Performing minimization step: 912. Total energy = 12531.6230 kcal/mol (12519.7247 without restraints) Performing minimization step: 913. Total energy = 12523.4723 kcal/mol (12511.5771 without restraints) Performing minimization step: 914. Total energy = 12515.3339 kcal/mol (12503.4417 without restraints) Performing minimization step: 915. Total energy = 12507.2085 kcal/mol (12495.3194 without restraints) Performing minimization step: 916. Total energy = 12499.0956 kcal/mol (12487.2096 without restraints) Performing minimization step: 917. Total energy = 12490.9948 kcal/mol (12479.1118 without restraints) Performing minimization step: 918. Total energy = 12482.9063 kcal/mol (12471.0265 without restraints) Performing minimization step: 919. Total energy = 12474.8304 kcal/mol (12462.9536 without restraints) Performing minimization step: 920. Total energy = 12466.7672 kcal/mol (12454.8935 without restraints) Performing minimization step: 921. Total energy = 12458.7161 kcal/mol (12446.8454 without restraints) Performing minimization step: 922. Total energy = 12450.6775 kcal/mol (12438.8099 without restraints) Performing minimization step: 923. Total energy = 12442.6513 kcal/mol (12430.7868 without restraints) Performing minimization step: 924. Total energy = 12434.6372 kcal/mol (12422.7757 without restraints) Performing minimization step: 925. Total energy = 12426.6352 kcal/mol (12414.7768 without restraints) Performing minimization step: 926. Total energy = 12418.6457 kcal/mol (12406.7902 without restraints) Performing minimization step: 927. Total energy = 12410.6676 kcal/mol (12398.8152 without restraints) Performing minimization step: 928. Total energy = 12402.7021 kcal/mol (12390.8527 without restraints) Performing minimization step: 929. Total energy = 12394.7484 kcal/mol (12382.9022 without restraints) Performing minimization step: 930. Total energy = 12386.8069 kcal/mol (12374.9636 without restraints) Performing minimization step: 931. Total energy = 12378.8771 kcal/mol (12367.0370 without restraints) Performing minimization step: 932. Total energy = 12370.9599 kcal/mol (12359.1227 without restraints) Performing minimization step: 933. Total energy = 12363.0545 kcal/mol (12351.2205 without restraints) Performing minimization step: 934. Total energy = 12355.1609 kcal/mol (12343.3298 without restraints) Performing minimization step: 935. Total energy = 12347.2793 kcal/mol (12335.4512 without restraints) Performing minimization step: 936. Total energy = 12339.4091 kcal/mol (12327.5839 without restraints) Performing minimization step: 937. Total energy = 12331.5510 kcal/mol (12319.7289 without restraints) Performing minimization step: 938. Total energy = 12323.7049 kcal/mol (12311.8859 without restraints) Performing minimization step: 939. Total energy = 12315.8699 kcal/mol (12304.0538 without restraints) Performing minimization step: 940. Total energy = 12308.0469 kcal/mol (12296.2338 without restraints) Performing minimization step: 941. Total energy = 12300.2358 kcal/mol (12288.4259 without restraints) Performing minimization step: 942. Total energy = 12292.4358 kcal/mol (12280.6288 without restraints) Performing minimization step: 943. Total energy = 12284.6477 kcal/mol (12272.8437 without restraints) Performing minimization step: 944. Total energy = 12276.8713 kcal/mol (12265.0701 without restraints) Performing minimization step: 945. Total energy = 12269.1067 kcal/mol (12257.3086 without restraints) Performing minimization step: 946. Total energy = 12261.3535 kcal/mol (12249.5585 without restraints) Performing minimization step: 947. Total energy = 12253.6124 kcal/mol (12241.8204 without restraints) Performing minimization step: 948. Total energy = 12245.8824 kcal/mol (12234.0933 without restraints) Performing minimization step: 949. Total energy = 12238.1640 kcal/mol (12226.3779 without restraints) Performing minimization step: 950. Total energy = 12230.4567 kcal/mol (12218.6737 without restraints) Performing minimization step: 951. Total energy = 12222.7609 kcal/mol (12210.9809 without restraints) Performing minimization step: 952. Total energy = 12215.0764 kcal/mol (12203.2993 without restraints) Performing minimization step: 953. Total energy = 12207.4035 kcal/mol (12195.6294 without restraints) Performing minimization step: 954. Total energy = 12199.7420 kcal/mol (12187.9709 without restraints) Performing minimization step: 955. Total energy = 12192.0916 kcal/mol (12180.3235 without restraints) Performing minimization step: 956. Total energy = 12184.4523 kcal/mol (12172.6869 without restraints) Performing minimization step: 957. Total energy = 12176.8240 kcal/mol (12165.0618 without restraints) Performing minimization step: 958. Total energy = 12169.2077 kcal/mol (12157.4485 without restraints) Performing minimization step: 959. Total energy = 12161.6025 kcal/mol (12149.8462 without restraints) Performing minimization step: 960. Total energy = 12154.0082 kcal/mol (12142.2549 without restraints) Performing minimization step: 961. Total energy = 12146.4252 kcal/mol (12134.6749 without restraints) Performing minimization step: 962. Total energy = 12138.8524 kcal/mol (12127.1051 without restraints) Performing minimization step: 963. Total energy = 12131.2915 kcal/mol (12119.5472 without restraints) Performing minimization step: 964. Total energy = 12123.7421 kcal/mol (12112.0007 without restraints) Performing minimization step: 965. Total energy = 12116.2031 kcal/mol (12104.4647 without restraints) Performing minimization step: 966. Total energy = 12108.6755 kcal/mol (12096.9400 without restraints) Performing minimization step: 967. Total energy = 12101.1588 kcal/mol (12089.4262 without restraints) Performing minimization step: 968. Total energy = 12093.6528 kcal/mol (12081.9232 without restraints) Performing minimization step: 969. Total energy = 12086.1588 kcal/mol (12074.4321 without restraints) Performing minimization step: 970. Total energy = 12078.6745 kcal/mol (12066.9509 without restraints) Performing minimization step: 971. Total energy = 12071.2015 kcal/mol (12059.4809 without restraints) Performing minimization step: 972. Total energy = 12063.7392 kcal/mol (12052.0213 without restraints) Performing minimization step: 973. Total energy = 12056.2874 kcal/mol (12044.5726 without restraints) Performing minimization step: 974. Total energy = 12048.8466 kcal/mol (12037.1345 without restraints) Performing minimization step: 975. Total energy = 12041.4164 kcal/mol (12029.7074 without restraints) Performing minimization step: 976. Total energy = 12033.9965 kcal/mol (12022.2904 without restraints) Performing minimization step: 977. Total energy = 12026.5875 kcal/mol (12014.8843 without restraints) Performing minimization step: 978. Total energy = 12019.1894 kcal/mol (12007.4892 without restraints) Performing minimization step: 979. Total energy = 12011.8017 kcal/mol (12000.1044 without restraints) Performing minimization step: 980. Total energy = 12004.4250 kcal/mol (11992.7306 without restraints) Performing minimization step: 981. Total energy = 11997.0585 kcal/mol (11985.3671 without restraints) Performing minimization step: 982. Total energy = 11989.7031 kcal/mol (11978.0147 without restraints) Performing minimization step: 983. Total energy = 11982.3586 kcal/mol (11970.6731 without restraints) Performing minimization step: 984. Total energy = 11975.0245 kcal/mol (11963.3420 without restraints) Performing minimization step: 985. Total energy = 11967.7011 kcal/mol (11956.0213 without restraints) Performing minimization step: 986. Total energy = 11960.3875 kcal/mol (11948.7107 without restraints) Performing minimization step: 987. Total energy = 11953.0846 kcal/mol (11941.4106 without restraints) Performing minimization step: 988. Total energy = 11945.7915 kcal/mol (11934.1204 without restraints) Performing minimization step: 989. Total energy = 11938.5094 kcal/mol (11926.8414 without restraints) Performing minimization step: 990. Total energy = 11931.2377 kcal/mol (11919.5725 without restraints) Performing minimization step: 991. Total energy = 11923.9760 kcal/mol (11912.3138 without restraints) Performing minimization step: 992. Total energy = 11916.7251 kcal/mol (11905.0658 without restraints) Performing minimization step: 993. Total energy = 11909.4843 kcal/mol (11897.8278 without restraints) Performing minimization step: 994. Total energy = 11902.2543 kcal/mol (11890.6009 without restraints) Performing minimization step: 995. Total energy = 11895.0340 kcal/mol (11883.3833 without restraints) Performing minimization step: 996. Total energy = 11887.8242 kcal/mol (11876.1766 without restraints) Performing minimization step: 997. Total energy = 11880.6245 kcal/mol (11868.9797 without restraints) Performing minimization step: 998. Total energy = 11873.4349 kcal/mol (11861.7929 without restraints) Performing minimization step: 999. Total energy = 11866.2553 kcal/mol (11854.6163 without restraints) Performing minimization step: 1000. Total energy = 11859.0866 kcal/mol (11847.4505 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 11851.9280 kcal/mol (11840.2947 without restraints) Performing minimization step: 1002. Total energy = 11844.7788 kcal/mol (11833.1485 without restraints) Performing minimization step: 1003. Total energy = 11837.6398 kcal/mol (11826.0123 without restraints) Performing minimization step: 1004. Total energy = 11830.5110 kcal/mol (11818.8864 without restraints) Performing minimization step: 1005. Total energy = 11823.3914 kcal/mol (11811.7697 without restraints) Performing minimization step: 1006. Total energy = 11816.2826 kcal/mol (11804.6638 without restraints) Performing minimization step: 1007. Total energy = 11809.1840 kcal/mol (11797.5682 without restraints) Performing minimization step: 1008. Total energy = 11802.0950 kcal/mol (11790.4818 without restraints) Performing minimization step: 1009. Total energy = 11795.0158 kcal/mol (11783.4056 without restraints) Performing minimization step: 1010. Total energy = 11787.9467 kcal/mol (11776.3393 without restraints) Performing minimization step: 1011. Total energy = 11780.8877 kcal/mol (11769.2834 without restraints) Performing minimization step: 1012. Total energy = 11773.8384 kcal/mol (11762.2368 without restraints) Performing minimization step: 1013. Total energy = 11766.7984 kcal/mol (11755.1997 without restraints) Performing minimization step: 1014. Total energy = 11759.7688 kcal/mol (11748.1730 without restraints) Performing minimization step: 1015. Total energy = 11752.7490 kcal/mol (11741.1560 without restraints) Performing minimization step: 1016. Total energy = 11745.7388 kcal/mol (11734.1488 without restraints) Performing minimization step: 1017. Total energy = 11738.7383 kcal/mol (11727.1511 without restraints) Performing minimization step: 1018. Total energy = 11731.7476 kcal/mol (11720.1633 without restraints) Performing minimization step: 1019. Total energy = 11724.7668 kcal/mol (11713.1852 without restraints) Performing minimization step: 1020. Total energy = 11717.7957 kcal/mol (11706.2171 without restraints) Performing minimization step: 1021. Total energy = 11710.8338 kcal/mol (11699.2579 without restraints) Performing minimization step: 1022. Total energy = 11703.8816 kcal/mol (11692.3088 without restraints) Performing minimization step: 1023. Total energy = 11696.9393 kcal/mol (11685.3692 without restraints) Performing minimization step: 1024. Total energy = 11690.0065 kcal/mol (11678.4392 without restraints) Performing minimization step: 1025. Total energy = 11683.0833 kcal/mol (11671.5190 without restraints) Performing minimization step: 1026. Total energy = 11676.1695 kcal/mol (11664.6080 without restraints) Performing minimization step: 1027. Total energy = 11669.2654 kcal/mol (11657.7068 without restraints) Performing minimization step: 1028. Total energy = 11662.3708 kcal/mol (11650.8151 without restraints) Performing minimization step: 1029. Total energy = 11655.4856 kcal/mol (11643.9325 without restraints) Performing minimization step: 1030. Total energy = 11648.6101 kcal/mol (11637.0601 without restraints) Performing minimization step: 1031. Total energy = 11641.7441 kcal/mol (11630.1968 without restraints) Performing minimization step: 1032. Total energy = 11634.8877 kcal/mol (11623.3433 without restraints) Performing minimization step: 1033. Total energy = 11628.0407 kcal/mol (11616.4991 without restraints) Performing minimization step: 1034. Total energy = 11621.2025 kcal/mol (11609.6638 without restraints) Performing minimization step: 1035. Total energy = 11614.3744 kcal/mol (11602.8386 without restraints) Performing minimization step: 1036. Total energy = 11607.5558 kcal/mol (11596.0228 without restraints) Performing minimization step: 1037. Total energy = 11600.7465 kcal/mol (11589.2163 without restraints) Performing minimization step: 1038. Total energy = 11593.9463 kcal/mol (11582.4190 without restraints) Performing minimization step: 1039. Total energy = 11587.1553 kcal/mol (11575.6307 without restraints) Performing minimization step: 1040. Total energy = 11580.3738 kcal/mol (11568.8523 without restraints) Performing minimization step: 1041. Total energy = 11573.6013 kcal/mol (11562.0824 without restraints) Performing minimization step: 1042. Total energy = 11566.8377 kcal/mol (11555.3216 without restraints) Performing minimization step: 1043. Total energy = 11560.0830 kcal/mol (11548.5698 without restraints) Performing minimization step: 1044. Total energy = 11553.3381 kcal/mol (11541.8277 without restraints) Performing minimization step: 1045. Total energy = 11546.6022 kcal/mol (11535.0946 without restraints) Performing minimization step: 1046. Total energy = 11539.8757 kcal/mol (11528.3709 without restraints) Performing minimization step: 1047. Total energy = 11533.1584 kcal/mol (11521.6565 without restraints) Performing minimization step: 1048. Total energy = 11526.4502 kcal/mol (11514.9512 without restraints) Performing minimization step: 1049. Total energy = 11519.7512 kcal/mol (11508.2549 without restraints) Performing minimization step: 1050. Total energy = 11513.0613 kcal/mol (11501.5678 without restraints) Performing minimization step: 1051. Total energy = 11506.3799 kcal/mol (11494.8893 without restraints) Performing minimization step: 1052. Total energy = 11499.7078 kcal/mol (11488.2200 without restraints) Performing minimization step: 1053. Total energy = 11493.0453 kcal/mol (11481.5605 without restraints) Performing minimization step: 1054. Total energy = 11486.3912 kcal/mol (11474.9091 without restraints) Performing minimization step: 1055. Total energy = 11479.7461 kcal/mol (11468.2668 without restraints) Performing minimization step: 1056. Total energy = 11473.1097 kcal/mol (11461.6332 without restraints) Performing minimization step: 1057. Total energy = 11466.4823 kcal/mol (11455.0086 without restraints) Performing minimization step: 1058. Total energy = 11459.8643 kcal/mol (11448.3934 without restraints) Performing minimization step: 1059. Total energy = 11453.2550 kcal/mol (11441.7869 without restraints) Performing minimization step: 1060. Total energy = 11446.6547 kcal/mol (11435.1895 without restraints) Performing minimization step: 1061. Total energy = 11440.0632 kcal/mol (11428.6007 without restraints) Performing minimization step: 1062. Total energy = 11433.4805 kcal/mol (11422.0208 without restraints) Performing minimization step: 1063. Total energy = 11426.9067 kcal/mol (11415.4498 without restraints) Performing minimization step: 1064. Total energy = 11420.3416 kcal/mol (11408.8875 without restraints) Performing minimization step: 1065. Total energy = 11413.7852 kcal/mol (11402.3338 without restraints) Performing minimization step: 1066. Total energy = 11407.2379 kcal/mol (11395.7894 without restraints) Performing minimization step: 1067. Total energy = 11400.6991 kcal/mol (11389.2534 without restraints) Performing minimization step: 1068. Total energy = 11394.1689 kcal/mol (11382.7260 without restraints) Performing minimization step: 1069. Total energy = 11387.6472 kcal/mol (11376.2072 without restraints) Performing minimization step: 1070. Total energy = 11381.1349 kcal/mol (11369.6976 without restraints) Performing minimization step: 1071. Total energy = 11374.6311 kcal/mol (11363.1967 without restraints) Performing minimization step: 1072. Total energy = 11368.1362 kcal/mol (11356.7045 without restraints) Performing minimization step: 1073. Total energy = 11361.6494 kcal/mol (11350.2205 without restraints) Performing minimization step: 1074. Total energy = 11355.1715 kcal/mol (11343.7454 without restraints) Performing minimization step: 1075. Total energy = 11348.7022 kcal/mol (11337.2789 without restraints) Performing minimization step: 1076. Total energy = 11342.2416 kcal/mol (11330.8212 without restraints) Performing minimization step: 1077. Total energy = 11335.7898 kcal/mol (11324.3721 without restraints) Performing minimization step: 1078. Total energy = 11329.3462 kcal/mol (11317.9313 without restraints) Performing minimization step: 1079. Total energy = 11322.9112 kcal/mol (11311.4991 without restraints) Performing minimization step: 1080. Total energy = 11316.4845 kcal/mol (11305.0751 without restraints) Performing minimization step: 1081. Total energy = 11310.0668 kcal/mol (11298.6605 without restraints) Performing minimization step: 1082. Total energy = 11303.6577 kcal/mol (11292.2539 without restraints) Performing minimization step: 1083. Total energy = 11297.2570 kcal/mol (11285.8560 without restraints) Performing minimization step: 1084. Total energy = 11290.8649 kcal/mol (11279.4666 without restraints) Performing minimization step: 1085. Total energy = 11284.4810 kcal/mol (11273.0856 without restraints) Performing minimization step: 1086. Total energy = 11278.1052 kcal/mol (11266.7125 without restraints) Performing minimization step: 1087. Total energy = 11271.7382 kcal/mol (11260.3483 without restraints) Performing minimization step: 1088. Total energy = 11265.3791 kcal/mol (11253.9920 without restraints) Performing minimization step: 1089. Total energy = 11259.0289 kcal/mol (11247.6445 without restraints) Performing minimization step: 1090. Total energy = 11252.6869 kcal/mol (11241.3053 without restraints) Performing minimization step: 1091. Total energy = 11246.3533 kcal/mol (11234.9746 without restraints) Performing minimization step: 1092. Total energy = 11240.0280 kcal/mol (11228.6520 without restraints) Performing minimization step: 1093. Total energy = 11233.7109 kcal/mol (11222.3377 without restraints) Performing minimization step: 1094. Total energy = 11227.4021 kcal/mol (11216.0316 without restraints) Performing minimization step: 1095. Total energy = 11221.1013 kcal/mol (11209.7336 without restraints) Performing minimization step: 1096. Total energy = 11214.8092 kcal/mol (11203.4443 without restraints) Performing minimization step: 1097. Total energy = 11208.5253 kcal/mol (11197.1632 without restraints) Performing minimization step: 1098. Total energy = 11202.2495 kcal/mol (11190.8901 without restraints) Performing minimization step: 1099. Total energy = 11195.9818 kcal/mol (11184.6252 without restraints) Performing minimization step: 1100. Total energy = 11189.7222 kcal/mol (11178.3680 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 11183.4705 kcal/mol (11172.1195 without restraints) Performing minimization step: 1102. Total energy = 11177.2277 kcal/mol (11165.8794 without restraints) Performing minimization step: 1103. Total energy = 11170.9926 kcal/mol (11159.6470 without restraints) Performing minimization step: 1104. Total energy = 11164.7662 kcal/mol (11153.4234 without restraints) Performing minimization step: 1105. Total energy = 11158.5473 kcal/mol (11147.2072 without restraints) Performing minimization step: 1106. Total energy = 11152.3366 kcal/mol (11140.9992 without restraints) Performing minimization step: 1107. Total energy = 11146.1336 kcal/mol (11134.7991 without restraints) Performing minimization step: 1108. Total energy = 11139.9392 kcal/mol (11128.6074 without restraints) Performing minimization step: 1109. Total energy = 11133.7529 kcal/mol (11122.4239 without restraints) Performing minimization step: 1110. Total energy = 11127.5743 kcal/mol (11116.2480 without restraints) Performing minimization step: 1111. Total energy = 11121.4039 kcal/mol (11110.0804 without restraints) Performing minimization step: 1112. Total energy = 11115.2419 kcal/mol (11103.9211 without restraints) Performing minimization step: 1113. Total energy = 11109.0876 kcal/mol (11097.7696 without restraints) Performing minimization step: 1114. Total energy = 11102.9410 kcal/mol (11091.6258 without restraints) Performing minimization step: 1115. Total energy = 11096.8025 kcal/mol (11085.4898 without restraints) Performing minimization step: 1116. Total energy = 11090.6723 kcal/mol (11079.3625 without restraints) Performing minimization step: 1117. Total energy = 11084.5496 kcal/mol (11073.2425 without restraints) Performing minimization step: 1118. Total energy = 11078.4344 kcal/mol (11067.1302 without restraints) Performing minimization step: 1119. Total energy = 11072.3277 kcal/mol (11061.0262 without restraints) Performing minimization step: 1120. Total energy = 11066.2288 kcal/mol (11054.9300 without restraints) Performing minimization step: 1121. Total energy = 11060.1380 kcal/mol (11048.8420 without restraints) Performing minimization step: 1122. Total energy = 11054.0549 kcal/mol (11042.7616 without restraints) Performing minimization step: 1123. Total energy = 11047.9800 kcal/mol (11036.6895 without restraints) Performing minimization step: 1124. Total energy = 11041.9129 kcal/mol (11030.6251 without restraints) Performing minimization step: 1125. Total energy = 11035.8532 kcal/mol (11024.5684 without restraints) Performing minimization step: 1126. Total energy = 11029.8015 kcal/mol (11018.5192 without restraints) Performing minimization step: 1127. Total energy = 11023.7570 kcal/mol (11012.4773 without restraints) Performing minimization step: 1128. Total energy = 11017.7207 kcal/mol (11006.4439 without restraints) Performing minimization step: 1129. Total energy = 11011.6925 kcal/mol (11000.4185 without restraints) Performing minimization step: 1130. Total energy = 11005.6715 kcal/mol (10994.4002 without restraints) Performing minimization step: 1131. Total energy = 10999.6586 kcal/mol (10988.3900 without restraints) Performing minimization step: 1132. Total energy = 10993.6532 kcal/mol (10982.3873 without restraints) Performing minimization step: 1133. Total energy = 10987.6555 kcal/mol (10976.3924 without restraints) Performing minimization step: 1134. Total energy = 10981.6655 kcal/mol (10970.4051 without restraints) Performing minimization step: 1135. Total energy = 10975.6832 kcal/mol (10964.4255 without restraints) Performing minimization step: 1136. Total energy = 10969.7084 kcal/mol (10958.4534 without restraints) Performing minimization step: 1137. Total energy = 10963.7412 kcal/mol (10952.4890 without restraints) Performing minimization step: 1138. Total energy = 10957.7816 kcal/mol (10946.5321 without restraints) Performing minimization step: 1139. Total energy = 10951.8296 kcal/mol (10940.5829 without restraints) Performing minimization step: 1140. Total energy = 10945.8852 kcal/mol (10934.6411 without restraints) Performing minimization step: 1141. Total energy = 10939.9484 kcal/mol (10928.7071 without restraints) Performing minimization step: 1142. Total energy = 10934.0191 kcal/mol (10922.7805 without restraints) Performing minimization step: 1143. Total energy = 10928.0974 kcal/mol (10916.8616 without restraints) Performing minimization step: 1144. Total energy = 10922.1833 kcal/mol (10910.9502 without restraints) Performing minimization step: 1145. Total energy = 10916.2768 kcal/mol (10905.0464 without restraints) Performing minimization step: 1146. Total energy = 10910.3777 kcal/mol (10899.1501 without restraints) Performing minimization step: 1147. Total energy = 10904.4859 kcal/mol (10893.2610 without restraints) Performing minimization step: 1148. Total energy = 10898.6022 kcal/mol (10887.3800 without restraints) Performing minimization step: 1149. Total energy = 10892.7256 kcal/mol (10881.5061 without restraints) Performing minimization step: 1150. Total energy = 10886.8566 kcal/mol (10875.6398 without restraints) Performing minimization step: 1151. Total energy = 10880.9948 kcal/mol (10869.7808 without restraints) Performing minimization step: 1152. Total energy = 10875.1405 kcal/mol (10863.9292 without restraints) Performing minimization step: 1153. Total energy = 10869.2935 kcal/mol (10858.0848 without restraints) Performing minimization step: 1154. Total energy = 10863.4537 kcal/mol (10852.2478 without restraints) Performing minimization step: 1155. Total energy = 10857.6222 kcal/mol (10846.4190 without restraints) Performing minimization step: 1156. Total energy = 10851.7975 kcal/mol (10840.5971 without restraints) Performing minimization step: 1157. Total energy = 10845.9795 kcal/mol (10834.7818 without restraints) Performing minimization step: 1158. Total energy = 10840.1695 kcal/mol (10828.9745 without restraints) Performing minimization step: 1159. Total energy = 10834.3664 kcal/mol (10823.1740 without restraints) Performing minimization step: 1160. Total energy = 10828.5715 kcal/mol (10817.3820 without restraints) Performing minimization step: 1161. Total energy = 10822.7836 kcal/mol (10811.5967 without restraints) Performing minimization step: 1162. Total energy = 10817.0033 kcal/mol (10805.8192 without restraints) Performing minimization step: 1163. Total energy = 10811.2297 kcal/mol (10800.0483 without restraints) Performing minimization step: 1164. Total energy = 10805.4633 kcal/mol (10794.2845 without restraints) Performing minimization step: 1165. Total energy = 10799.7046 kcal/mol (10788.5287 without restraints) Performing minimization step: 1166. Total energy = 10793.9526 kcal/mol (10782.7793 without restraints) Performing minimization step: 1167. Total energy = 10788.2080 kcal/mol (10777.0375 without restraints) Performing minimization step: 1168. Total energy = 10782.4705 kcal/mol (10771.3028 without restraints) Performing minimization step: 1169. Total energy = 10776.7401 kcal/mol (10765.5749 without restraints) Performing minimization step: 1170. Total energy = 10771.0169 kcal/mol (10759.8544 without restraints) Performing minimization step: 1171. Total energy = 10765.3011 kcal/mol (10754.1414 without restraints) Performing minimization step: 1172. Total energy = 10759.5925 kcal/mol (10748.4355 without restraints) Performing minimization step: 1173. Total energy = 10753.8912 kcal/mol (10742.7369 without restraints) Performing minimization step: 1174. Total energy = 10748.1969 kcal/mol (10737.0454 without restraints) Performing minimization step: 1175. Total energy = 10742.5101 kcal/mol (10731.3611 without restraints) Performing minimization step: 1176. Total energy = 10736.8291 kcal/mol (10725.6827 without restraints) Performing minimization step: 1177. Total energy = 10731.1558 kcal/mol (10720.0123 without restraints) Performing minimization step: 1178. Total energy = 10725.4898 kcal/mol (10714.3490 without restraints) Performing minimization step: 1179. Total energy = 10719.8310 kcal/mol (10708.6929 without restraints) Performing minimization step: 1180. Total energy = 10714.1788 kcal/mol (10703.0434 without restraints) Performing minimization step: 1181. Total energy = 10708.5340 kcal/mol (10697.4013 without restraints) Performing minimization step: 1182. Total energy = 10702.8962 kcal/mol (10691.7662 without restraints) Performing minimization step: 1183. Total energy = 10697.2655 kcal/mol (10686.1382 without restraints) Performing minimization step: 1184. Total energy = 10691.6420 kcal/mol (10680.5174 without restraints) Performing minimization step: 1185. Total energy = 10686.0253 kcal/mol (10674.9034 without restraints) Performing minimization step: 1186. Total energy = 10680.4155 kcal/mol (10669.2962 without restraints) Performing minimization step: 1187. Total energy = 10674.8129 kcal/mol (10663.6964 without restraints) Performing minimization step: 1188. Total energy = 10669.2172 kcal/mol (10658.1033 without restraints) Performing minimization step: 1189. Total energy = 10663.6282 kcal/mol (10652.5171 without restraints) Performing minimization step: 1190. Total energy = 10658.0465 kcal/mol (10646.9381 without restraints) Performing minimization step: 1191. Total energy = 10652.4714 kcal/mol (10641.3656 without restraints) Performing minimization step: 1192. Total energy = 10646.9032 kcal/mol (10635.8002 without restraints) Performing minimization step: 1193. Total energy = 10641.3419 kcal/mol (10630.2414 without restraints) Performing minimization step: 1194. Total energy = 10635.7874 kcal/mol (10624.6898 without restraints) Performing minimization step: 1195. Total energy = 10630.2404 kcal/mol (10619.1454 without restraints) Performing minimization step: 1196. Total energy = 10624.6993 kcal/mol (10613.6070 without restraints) Performing minimization step: 1197. Total energy = 10619.1650 kcal/mol (10608.0753 without restraints) Performing minimization step: 1198. Total energy = 10613.6382 kcal/mol (10602.5513 without restraints) Performing minimization step: 1199. Total energy = 10608.1182 kcal/mol (10597.0341 without restraints) Performing minimization step: 1200. Total energy = 10602.6055 kcal/mol (10591.5242 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 10597.0997 kcal/mol (10586.0209 without restraints) Performing minimization step: 1202. Total energy = 10591.5998 kcal/mol (10580.5236 without restraints) Performing minimization step: 1203. Total energy = 10586.1069 kcal/mol (10575.0334 without restraints) Performing minimization step: 1204. Total energy = 10580.6211 kcal/mol (10569.5503 without restraints) Performing minimization step: 1205. Total energy = 10575.1422 kcal/mol (10564.0741 without restraints) Performing minimization step: 1206. Total energy = 10569.6693 kcal/mol (10558.6038 without restraints) Performing minimization step: 1207. Total energy = 10564.2036 kcal/mol (10553.1407 without restraints) Performing minimization step: 1208. Total energy = 10558.7442 kcal/mol (10547.6841 without restraints) Performing minimization step: 1209. Total energy = 10553.2922 kcal/mol (10542.2347 without restraints) Performing minimization step: 1210. Total energy = 10547.8463 kcal/mol (10536.7916 without restraints) Performing minimization step: 1211. Total energy = 10542.4073 kcal/mol (10531.3553 without restraints) Performing minimization step: 1212. Total energy = 10536.9750 kcal/mol (10525.9257 without restraints) Performing minimization step: 1213. Total energy = 10531.5495 kcal/mol (10520.5030 without restraints) Performing minimization step: 1214. Total energy = 10526.1306 kcal/mol (10515.0866 without restraints) Performing minimization step: 1215. Total energy = 10520.7180 kcal/mol (10509.6768 without restraints) Performing minimization step: 1216. Total energy = 10515.3121 kcal/mol (10504.2735 without restraints) Performing minimization step: 1217. Total energy = 10509.9124 kcal/mol (10498.8765 without restraints) Performing minimization step: 1218. Total energy = 10504.5197 kcal/mol (10493.4864 without restraints) Performing minimization step: 1219. Total energy = 10499.1336 kcal/mol (10488.1030 without restraints) Performing minimization step: 1220. Total energy = 10493.7540 kcal/mol (10482.7262 without restraints) Performing minimization step: 1221. Total energy = 10488.3805 kcal/mol (10477.3552 without restraints) Performing minimization step: 1222. Total energy = 10483.0140 kcal/mol (10471.9915 without restraints) Performing minimization step: 1223. Total energy = 10477.6546 kcal/mol (10466.6348 without restraints) Performing minimization step: 1224. Total energy = 10472.3014 kcal/mol (10461.2842 without restraints) Performing minimization step: 1225. Total energy = 10466.9543 kcal/mol (10455.9397 without restraints) Performing minimization step: 1226. Total energy = 10461.6140 kcal/mol (10450.6021 without restraints) Performing minimization step: 1227. Total energy = 10456.2800 kcal/mol (10445.2708 without restraints) Performing minimization step: 1228. Total energy = 10450.9529 kcal/mol (10439.9464 without restraints) Performing minimization step: 1229. Total energy = 10445.6324 kcal/mol (10434.6288 without restraints) Performing minimization step: 1230. Total energy = 10440.3183 kcal/mol (10429.3172 without restraints) Performing minimization step: 1231. Total energy = 10435.0104 kcal/mol (10424.0120 without restraints) Performing minimization step: 1232. Total energy = 10429.7091 kcal/mol (10418.7133 without restraints) Performing minimization step: 1233. Total energy = 10424.4141 kcal/mol (10413.4208 without restraints) Performing minimization step: 1234. Total energy = 10419.1255 kcal/mol (10408.1350 without restraints) Performing minimization step: 1235. Total energy = 10413.8434 kcal/mol (10402.8557 without restraints) Performing minimization step: 1236. Total energy = 10408.5678 kcal/mol (10397.5827 without restraints) Performing minimization step: 1237. Total energy = 10403.2985 kcal/mol (10392.3161 without restraints) Performing minimization step: 1238. Total energy = 10398.0359 kcal/mol (10387.0561 without restraints) Performing minimization step: 1239. Total energy = 10392.7794 kcal/mol (10381.8022 without restraints) Performing minimization step: 1240. Total energy = 10387.5294 kcal/mol (10376.5549 without restraints) Performing minimization step: 1241. Total energy = 10382.2860 kcal/mol (10371.3142 without restraints) Performing minimization step: 1242. Total energy = 10377.0483 kcal/mol (10366.0791 without restraints) Performing minimization step: 1243. Total energy = 10371.8169 kcal/mol (10360.8505 without restraints) Performing minimization step: 1244. Total energy = 10366.5921 kcal/mol (10355.6283 without restraints) Performing minimization step: 1245. Total energy = 10361.3736 kcal/mol (10350.4125 without restraints) Performing minimization step: 1246. Total energy = 10356.1615 kcal/mol (10345.2030 without restraints) Performing minimization step: 1247. Total energy = 10350.9553 kcal/mol (10339.9995 without restraints) Performing minimization step: 1248. Total energy = 10345.7556 kcal/mol (10334.8024 without restraints) Performing minimization step: 1249. Total energy = 10340.5622 kcal/mol (10329.6117 without restraints) Performing minimization step: 1250. Total energy = 10335.3751 kcal/mol (10324.4273 without restraints) Performing minimization step: 1251. Total energy = 10330.1943 kcal/mol (10319.2491 without restraints) Performing minimization step: 1252. Total energy = 10325.0194 kcal/mol (10314.0767 without restraints) Performing minimization step: 1253. Total energy = 10319.8509 kcal/mol (10308.9111 without restraints) Performing minimization step: 1254. Total energy = 10314.6888 kcal/mol (10303.7516 without restraints) Performing minimization step: 1255. Total energy = 10309.5336 kcal/mol (10298.5991 without restraints) Performing minimization step: 1256. Total energy = 10304.3839 kcal/mol (10293.4520 without restraints) Performing minimization step: 1257. Total energy = 10299.2405 kcal/mol (10288.3113 without restraints) Performing minimization step: 1258. Total energy = 10294.1031 kcal/mol (10283.1765 without restraints) Performing minimization step: 1259. Total energy = 10288.9720 kcal/mol (10278.0481 without restraints) Performing minimization step: 1260. Total energy = 10283.8469 kcal/mol (10272.9256 without restraints) Performing minimization step: 1261. Total energy = 10278.7280 kcal/mol (10267.8094 without restraints) Performing minimization step: 1262. Total energy = 10273.6155 kcal/mol (10262.6994 without restraints) Performing minimization step: 1263. Total energy = 10268.5083 kcal/mol (10257.5950 without restraints) Performing minimization step: 1264. Total energy = 10263.4075 kcal/mol (10252.4968 without restraints) Performing minimization step: 1265. Total energy = 10258.3134 kcal/mol (10247.4054 without restraints) Performing minimization step: 1266. Total energy = 10253.2250 kcal/mol (10242.3196 without restraints) Performing minimization step: 1267. Total energy = 10248.1422 kcal/mol (10237.2395 without restraints) Performing minimization step: 1268. Total energy = 10243.0653 kcal/mol (10232.1652 without restraints) Performing minimization step: 1269. Total energy = 10237.9951 kcal/mol (10227.0977 without restraints) Performing minimization step: 1270. Total energy = 10232.9308 kcal/mol (10222.0361 without restraints) Performing minimization step: 1271. Total energy = 10227.8729 kcal/mol (10216.9809 without restraints) Performing minimization step: 1272. Total energy = 10222.8210 kcal/mol (10211.9317 without restraints) Performing minimization step: 1273. Total energy = 10217.7753 kcal/mol (10206.8886 without restraints) Performing minimization step: 1274. Total energy = 10212.7355 kcal/mol (10201.8513 without restraints) Performing minimization step: 1275. Total energy = 10207.7015 kcal/mol (10196.8200 without restraints) Performing minimization step: 1276. Total energy = 10202.6736 kcal/mol (10191.7947 without restraints) Performing minimization step: 1277. Total energy = 10197.6517 kcal/mol (10186.7756 without restraints) Performing minimization step: 1278. Total energy = 10192.6360 kcal/mol (10181.7625 without restraints) Performing minimization step: 1279. Total energy = 10187.6262 kcal/mol (10176.7553 without restraints) Performing minimization step: 1280. Total energy = 10182.6223 kcal/mol (10171.7541 without restraints) Performing minimization step: 1281. Total energy = 10177.6241 kcal/mol (10166.7585 without restraints) Performing minimization step: 1282. Total energy = 10172.6319 kcal/mol (10161.7689 without restraints) Performing minimization step: 1283. Total energy = 10167.6454 kcal/mol (10156.7849 without restraints) Performing minimization step: 1284. Total energy = 10162.6648 kcal/mol (10151.8069 without restraints) Performing minimization step: 1285. Total energy = 10157.6900 kcal/mol (10146.8348 without restraints) Performing minimization step: 1286. Total energy = 10152.7212 kcal/mol (10141.8689 without restraints) Performing minimization step: 1287. Total energy = 10147.7586 kcal/mol (10136.9088 without restraints) Performing minimization step: 1288. Total energy = 10142.8018 kcal/mol (10131.9547 without restraints) Performing minimization step: 1289. Total energy = 10137.8511 kcal/mol (10127.0066 without restraints) Performing minimization step: 1290. Total energy = 10132.9057 kcal/mol (10122.0638 without restraints) Performing minimization step: 1291. Total energy = 10127.9669 kcal/mol (10117.1276 without restraints) Performing minimization step: 1292. Total energy = 10123.0334 kcal/mol (10112.1970 without restraints) Performing minimization step: 1293. Total energy = 10118.1062 kcal/mol (10107.2722 without restraints) Performing minimization step: 1294. Total energy = 10113.1846 kcal/mol (10102.3533 without restraints) Performing minimization step: 1295. Total energy = 10108.2687 kcal/mol (10097.4400 without restraints) Performing minimization step: 1296. Total energy = 10103.3578 kcal/mol (10092.5316 without restraints) Performing minimization step: 1297. Total energy = 10098.4535 kcal/mol (10087.6301 without restraints) Performing minimization step: 1298. Total energy = 10093.5549 kcal/mol (10082.7341 without restraints) Performing minimization step: 1299. Total energy = 10088.6617 kcal/mol (10077.8436 without restraints) Performing minimization step: 1300. Total energy = 10083.7749 kcal/mol (10072.9594 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 10078.8940 kcal/mol (10068.0810 without restraints) Performing minimization step: 1302. Total energy = 10074.0178 kcal/mol (10063.2075 without restraints) Performing minimization step: 1303. Total energy = 10069.1479 kcal/mol (10058.3403 without restraints) Performing minimization step: 1304. Total energy = 10064.2839 kcal/mol (10053.4789 without restraints) Performing minimization step: 1305. Total energy = 10059.4257 kcal/mol (10048.6234 without restraints) Performing minimization step: 1306. Total energy = 10054.5731 kcal/mol (10043.7734 without restraints) Performing minimization step: 1307. Total energy = 10049.7259 kcal/mol (10038.9287 without restraints) Performing minimization step: 1308. Total energy = 10044.8847 kcal/mol (10034.0903 without restraints) Performing minimization step: 1309. Total energy = 10040.0493 kcal/mol (10029.2577 without restraints) Performing minimization step: 1310. Total energy = 10035.2198 kcal/mol (10024.4306 without restraints) Performing minimization step: 1311. Total energy = 10030.3954 kcal/mol (10019.6086 without restraints) Performing minimization step: 1312. Total energy = 10025.5760 kcal/mol (10014.7921 without restraints) Performing minimization step: 1313. Total energy = 10020.7632 kcal/mol (10009.9819 without restraints) Performing minimization step: 1314. Total energy = 10015.9558 kcal/mol (10005.1771 without restraints) Performing minimization step: 1315. Total energy = 10011.1541 kcal/mol (10000.3781 without restraints) Performing minimization step: 1316. Total energy = 10006.3579 kcal/mol (9995.5845 without restraints) Performing minimization step: 1317. Total energy = 10001.5677 kcal/mol (9990.7969 without restraints) Performing minimization step: 1318. Total energy = 9996.7831 kcal/mol (9986.0150 without restraints) Performing minimization step: 1319. Total energy = 9992.0037 kcal/mol (9981.2381 without restraints) Performing minimization step: 1320. Total energy = 9987.2301 kcal/mol (9976.4672 without restraints) Performing minimization step: 1321. Total energy = 9982.4616 kcal/mol (9971.7013 without restraints) Performing minimization step: 1322. Total energy = 9977.6988 kcal/mol (9966.9413 without restraints) Performing minimization step: 1323. Total energy = 9972.9419 kcal/mol (9962.1870 without restraints) Performing minimization step: 1324. Total energy = 9968.1907 kcal/mol (9957.4384 without restraints) Performing minimization step: 1325. Total energy = 9963.4449 kcal/mol (9952.6951 without restraints) Performing minimization step: 1326. Total energy = 9958.7047 kcal/mol (9947.9575 without restraints) Performing minimization step: 1327. Total energy = 9953.9701 kcal/mol (9943.2255 without restraints) Performing minimization step: 1328. Total energy = 9949.2406 kcal/mol (9938.4986 without restraints) Performing minimization step: 1329. Total energy = 9944.5167 kcal/mol (9933.7774 without restraints) Performing minimization step: 1330. Total energy = 9939.7984 kcal/mol (9929.0617 without restraints) Performing minimization step: 1331. Total energy = 9935.0858 kcal/mol (9924.3518 without restraints) Performing minimization step: 1332. Total energy = 9930.3785 kcal/mol (9919.6470 without restraints) Performing minimization step: 1333. Total energy = 9925.6765 kcal/mol (9914.9477 without restraints) Performing minimization step: 1334. Total energy = 9920.9801 kcal/mol (9910.2539 without restraints) Performing minimization step: 1335. Total energy = 9916.2895 kcal/mol (9905.5660 without restraints) Performing minimization step: 1336. Total energy = 9911.6039 kcal/mol (9900.8829 without restraints) Performing minimization step: 1337. Total energy = 9906.9235 kcal/mol (9896.2051 without restraints) Performing minimization step: 1338. Total energy = 9902.2486 kcal/mol (9891.5328 without restraints) Performing minimization step: 1339. Total energy = 9897.5791 kcal/mol (9886.8658 without restraints) Performing minimization step: 1340. Total energy = 9892.9148 kcal/mol (9882.2042 without restraints) Performing minimization step: 1341. Total energy = 9888.2562 kcal/mol (9877.5483 without restraints) Performing minimization step: 1342. Total energy = 9883.6034 kcal/mol (9872.8981 without restraints) Performing minimization step: 1343. Total energy = 9878.9556 kcal/mol (9868.2530 without restraints) Performing minimization step: 1344. Total energy = 9874.3132 kcal/mol (9863.6132 without restraints) Performing minimization step: 1345. Total energy = 9869.6763 kcal/mol (9858.9787 without restraints) Performing minimization step: 1346. Total energy = 9865.0450 kcal/mol (9854.3503 without restraints) Performing minimization step: 1347. Total energy = 9860.4188 kcal/mol (9849.7266 without restraints) Performing minimization step: 1348. Total energy = 9855.7978 kcal/mol (9845.1082 without restraints) Performing minimization step: 1349. Total energy = 9851.1822 kcal/mol (9840.4952 without restraints) Performing minimization step: 1350. Total energy = 9846.5720 kcal/mol (9835.8876 without restraints) Performing minimization step: 1351. Total energy = 9841.9674 kcal/mol (9831.2855 without restraints) Performing minimization step: 1352. Total energy = 9837.3672 kcal/mol (9826.6880 without restraints) Performing minimization step: 1353. Total energy = 9832.7731 kcal/mol (9822.0967 without restraints) Performing minimization step: 1354. Total energy = 9828.1845 kcal/mol (9817.5108 without restraints) Performing minimization step: 1355. Total energy = 9823.6008 kcal/mol (9812.9294 without restraints) Performing minimization step: 1356. Total energy = 9819.0224 kcal/mol (9808.3536 without restraints) Performing minimization step: 1357. Total energy = 9814.4491 kcal/mol (9803.7829 without restraints) Performing minimization step: 1358. Total energy = 9809.8812 kcal/mol (9799.2177 without restraints) Performing minimization step: 1359. Total energy = 9805.3184 kcal/mol (9794.6576 without restraints) Performing minimization step: 1360. Total energy = 9800.7604 kcal/mol (9790.1019 without restraints) Performing minimization step: 1361. Total energy = 9796.2082 kcal/mol (9785.5525 without restraints) Performing minimization step: 1362. Total energy = 9791.6608 kcal/mol (9781.0078 without restraints) Performing minimization step: 1363. Total energy = 9787.1194 kcal/mol (9776.4689 without restraints) Performing minimization step: 1364. Total energy = 9782.5829 kcal/mol (9771.9350 without restraints) Performing minimization step: 1365. Total energy = 9778.0513 kcal/mol (9767.4061 without restraints) Performing minimization step: 1366. Total energy = 9773.5252 kcal/mol (9762.8825 without restraints) Performing minimization step: 1367. Total energy = 9769.0042 kcal/mol (9758.3642 without restraints) Performing minimization step: 1368. Total energy = 9764.4882 kcal/mol (9753.8507 without restraints) Performing minimization step: 1369. Total energy = 9759.9774 kcal/mol (9749.3426 without restraints) Performing minimization step: 1370. Total energy = 9755.4716 kcal/mol (9744.8393 without restraints) Performing minimization step: 1371. Total energy = 9750.9709 kcal/mol (9740.3413 without restraints) Performing minimization step: 1372. Total energy = 9746.4755 kcal/mol (9735.8485 without restraints) Performing minimization step: 1373. Total energy = 9741.9849 kcal/mol (9731.3603 without restraints) Performing minimization step: 1374. Total energy = 9737.4998 kcal/mol (9726.8779 without restraints) Performing minimization step: 1375. Total energy = 9733.0197 kcal/mol (9722.4003 without restraints) Performing minimization step: 1376. Total energy = 9728.5445 kcal/mol (9717.9279 without restraints) Performing minimization step: 1377. Total energy = 9724.0748 kcal/mol (9713.4607 without restraints) Performing minimization step: 1378. Total energy = 9719.6102 kcal/mol (9708.9988 without restraints) Performing minimization step: 1379. Total energy = 9715.1505 kcal/mol (9704.5417 without restraints) Performing minimization step: 1380. Total energy = 9710.6961 kcal/mol (9700.0899 without restraints) Performing minimization step: 1381. Total energy = 9706.2467 kcal/mol (9695.6430 without restraints) Performing minimization step: 1382. Total energy = 9701.8020 kcal/mol (9691.2009 without restraints) Performing minimization step: 1383. Total energy = 9697.3623 kcal/mol (9686.7639 without restraints) Performing minimization step: 1384. Total energy = 9692.9280 kcal/mol (9682.3322 without restraints) Performing minimization step: 1385. Total energy = 9688.4986 kcal/mol (9677.9053 without restraints) Performing minimization step: 1386. Total energy = 9684.0737 kcal/mol (9673.4830 without restraints) Performing minimization step: 1387. Total energy = 9679.6539 kcal/mol (9669.0658 without restraints) Performing minimization step: 1388. Total energy = 9675.2395 kcal/mol (9664.6540 without restraints) Performing minimization step: 1389. Total energy = 9670.8300 kcal/mol (9660.2471 without restraints) Performing minimization step: 1390. Total energy = 9666.4256 kcal/mol (9655.8453 without restraints) Performing minimization step: 1391. Total energy = 9662.0265 kcal/mol (9651.4489 without restraints) Performing minimization step: 1392. Total energy = 9657.6322 kcal/mol (9647.0571 without restraints) Performing minimization step: 1393. Total energy = 9653.2428 kcal/mol (9642.6704 without restraints) Performing minimization step: 1394. Total energy = 9648.8584 kcal/mol (9638.2884 without restraints) Performing minimization step: 1395. Total energy = 9644.4788 kcal/mol (9633.9114 without restraints) Performing minimization step: 1396. Total energy = 9640.1043 kcal/mol (9629.5396 without restraints) Performing minimization step: 1397. Total energy = 9635.7342 kcal/mol (9625.1720 without restraints) Performing minimization step: 1398. Total energy = 9631.3694 kcal/mol (9620.8100 without restraints) Performing minimization step: 1399. Total energy = 9627.0097 kcal/mol (9616.4527 without restraints) Performing minimization step: 1400. Total energy = 9622.6547 kcal/mol (9612.1002 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 9618.3046 kcal/mol (9607.7527 without restraints) Performing minimization step: 1402. Total energy = 9613.9595 kcal/mol (9603.4103 without restraints) Performing minimization step: 1403. Total energy = 9609.6187 kcal/mol (9599.0721 without restraints) Performing minimization step: 1404. Total energy = 9605.2836 kcal/mol (9594.7394 without restraints) Performing minimization step: 1405. Total energy = 9600.9533 kcal/mol (9590.4118 without restraints) Performing minimization step: 1406. Total energy = 9596.6277 kcal/mol (9586.0888 without restraints) Performing minimization step: 1407. Total energy = 9592.3065 kcal/mol (9581.7701 without restraints) Performing minimization step: 1408. Total energy = 9587.9904 kcal/mol (9577.4566 without restraints) Performing minimization step: 1409. Total energy = 9583.6793 kcal/mol (9573.1481 without restraints) Performing minimization step: 1410. Total energy = 9579.3730 kcal/mol (9568.8445 without restraints) Performing minimization step: 1411. Total energy = 9575.0715 kcal/mol (9564.5455 without restraints) Performing minimization step: 1412. Total energy = 9570.7744 kcal/mol (9560.2509 without restraints) Performing minimization step: 1413. Total energy = 9566.4826 kcal/mol (9555.9617 without restraints) Performing minimization step: 1414. Total energy = 9562.1954 kcal/mol (9551.6771 without restraints) Performing minimization step: 1415. Total energy = 9557.9131 kcal/mol (9547.3974 without restraints) Performing minimization step: 1416. Total energy = 9553.6358 kcal/mol (9543.1227 without restraints) Performing minimization step: 1417. Total energy = 9549.3632 kcal/mol (9538.8527 without restraints) Performing minimization step: 1418. Total energy = 9545.0953 kcal/mol (9534.5873 without restraints) Performing minimization step: 1419. Total energy = 9540.8318 kcal/mol (9530.3264 without restraints) Performing minimization step: 1420. Total energy = 9536.5737 kcal/mol (9526.0709 without restraints) Performing minimization step: 1421. Total energy = 9532.3199 kcal/mol (9521.8197 without restraints) Performing minimization step: 1422. Total energy = 9528.0707 kcal/mol (9517.5730 without restraints) Performing minimization step: 1423. Total energy = 9523.8264 kcal/mol (9513.3313 without restraints) Performing minimization step: 1424. Total energy = 9519.5866 kcal/mol (9509.0938 without restraints) Performing minimization step: 1425. Total energy = 9515.3514 kcal/mol (9504.8615 without restraints) Performing minimization step: 1426. Total energy = 9511.1212 kcal/mol (9500.6338 without restraints) Performing minimization step: 1427. Total energy = 9506.8959 kcal/mol (9496.4111 without restraints) Performing minimization step: 1428. Total energy = 9502.6751 kcal/mol (9492.1930 without restraints) Performing minimization step: 1429. Total energy = 9498.4592 kcal/mol (9487.9795 without restraints) Performing minimization step: 1430. Total energy = 9494.2479 kcal/mol (9483.7709 without restraints) Performing minimization step: 1431. Total energy = 9490.0414 kcal/mol (9479.5669 without restraints) Performing minimization step: 1432. Total energy = 9485.8392 kcal/mol (9475.3673 without restraints) Performing minimization step: 1433. Total energy = 9481.6418 kcal/mol (9471.1723 without restraints) Performing minimization step: 1434. Total energy = 9477.4490 kcal/mol (9466.9822 without restraints) Performing minimization step: 1435. Total energy = 9473.2611 kcal/mol (9462.7969 without restraints) Performing minimization step: 1436. Total energy = 9469.0775 kcal/mol (9458.6158 without restraints) Performing minimization step: 1437. Total energy = 9464.8983 kcal/mol (9454.4392 without restraints) Performing minimization step: 1438. Total energy = 9460.7236 kcal/mol (9450.2671 without restraints) Performing minimization step: 1439. Total energy = 9456.5538 kcal/mol (9446.0998 without restraints) Performing minimization step: 1440. Total energy = 9452.3881 kcal/mol (9441.9367 without restraints) Performing minimization step: 1441. Total energy = 9448.2276 kcal/mol (9437.7789 without restraints) Performing minimization step: 1442. Total energy = 9444.0717 kcal/mol (9433.6256 without restraints) Performing minimization step: 1443. Total energy = 9439.9203 kcal/mol (9429.4765 without restraints) Performing minimization step: 1444. Total energy = 9435.7733 kcal/mol (9425.3322 without restraints) Performing minimization step: 1445. Total energy = 9431.6311 kcal/mol (9421.1925 without restraints) Performing minimization step: 1446. Total energy = 9427.4925 kcal/mol (9417.0565 without restraints) Performing minimization step: 1447. Total energy = 9423.3592 kcal/mol (9412.9258 without restraints) Performing minimization step: 1448. Total energy = 9419.2306 kcal/mol (9408.7997 without restraints) Performing minimization step: 1449. Total energy = 9415.1062 kcal/mol (9404.6779 without restraints) Performing minimization step: 1450. Total energy = 9410.9867 kcal/mol (9400.5609 without restraints) Performing minimization step: 1451. Total energy = 9406.8713 kcal/mol (9396.4481 without restraints) Performing minimization step: 1452. Total energy = 9402.7603 kcal/mol (9392.3397 without restraints) Performing minimization step: 1453. Total energy = 9398.6542 kcal/mol (9388.2362 without restraints) Performing minimization step: 1454. Total energy = 9394.5525 kcal/mol (9384.1370 without restraints) Performing minimization step: 1455. Total energy = 9390.4554 kcal/mol (9380.0425 without restraints) Performing minimization step: 1456. Total energy = 9386.3625 kcal/mol (9375.9520 without restraints) Performing minimization step: 1457. Total energy = 9382.2740 kcal/mol (9371.8662 without restraints) Performing minimization step: 1458. Total energy = 9378.1901 kcal/mol (9367.7848 without restraints) Performing minimization step: 1459. Total energy = 9374.1108 kcal/mol (9363.7081 without restraints) Performing minimization step: 1460. Total energy = 9370.0361 kcal/mol (9359.6359 without restraints) Performing minimization step: 1461. Total energy = 9365.9655 kcal/mol (9355.5679 without restraints) Performing minimization step: 1462. Total energy = 9361.8991 kcal/mol (9351.5041 without restraints) Performing minimization step: 1463. Total energy = 9357.8378 kcal/mol (9347.4452 without restraints) Performing minimization step: 1464. Total energy = 9353.7806 kcal/mol (9343.3906 without restraints) Performing minimization step: 1465. Total energy = 9349.7277 kcal/mol (9339.3403 without restraints) Performing minimization step: 1466. Total energy = 9345.6792 kcal/mol (9335.2944 without restraints) Performing minimization step: 1467. Total energy = 9341.6351 kcal/mol (9331.2528 without restraints) Performing minimization step: 1468. Total energy = 9337.5950 kcal/mol (9327.2152 without restraints) Performing minimization step: 1469. Total energy = 9333.5596 kcal/mol (9323.1823 without restraints) Performing minimization step: 1470. Total energy = 9329.5285 kcal/mol (9319.1539 without restraints) Performing minimization step: 1471. Total energy = 9325.5020 kcal/mol (9315.1299 without restraints) Performing minimization step: 1472. Total energy = 9321.4797 kcal/mol (9311.1101 without restraints) Performing minimization step: 1473. Total energy = 9317.4618 kcal/mol (9307.0948 without restraints) Performing minimization step: 1474. Total energy = 9313.4481 kcal/mol (9303.0837 without restraints) Performing minimization step: 1475. Total energy = 9309.4392 kcal/mol (9299.0773 without restraints) Performing minimization step: 1476. Total energy = 9305.4348 kcal/mol (9295.0755 without restraints) Performing minimization step: 1477. Total energy = 9301.4341 kcal/mol (9291.0773 without restraints) Performing minimization step: 1478. Total energy = 9297.4380 kcal/mol (9287.0838 without restraints) Performing minimization step: 1479. Total energy = 9293.4462 kcal/mol (9283.0946 without restraints) Performing minimization step: 1480. Total energy = 9289.4583 kcal/mol (9279.1092 without restraints) Performing minimization step: 1481. Total energy = 9285.4751 kcal/mol (9275.1286 without restraints) Performing minimization step: 1482. Total energy = 9281.4960 kcal/mol (9271.1519 without restraints) Performing minimization step: 1483. Total energy = 9277.5211 kcal/mol (9267.1795 without restraints) Performing minimization step: 1484. Total energy = 9273.5506 kcal/mol (9263.2116 without restraints) Performing minimization step: 1485. Total energy = 9269.5841 kcal/mol (9259.2477 without restraints) Performing minimization step: 1486. Total energy = 9265.6216 kcal/mol (9255.2875 without restraints) Performing minimization step: 1487. Total energy = 9261.6641 kcal/mol (9251.3327 without restraints) Performing minimization step: 1488. Total energy = 9257.7103 kcal/mol (9247.3814 without restraints) Performing minimization step: 1489. Total energy = 9253.7606 kcal/mol (9243.4343 without restraints) Performing minimization step: 1490. Total energy = 9249.8155 kcal/mol (9239.4918 without restraints) Performing minimization step: 1491. Total energy = 9245.8749 kcal/mol (9235.5537 without restraints) Performing minimization step: 1492. Total energy = 9241.9383 kcal/mol (9231.6196 without restraints) Performing minimization step: 1493. Total energy = 9238.0054 kcal/mol (9227.6892 without restraints) Performing minimization step: 1494. Total energy = 9234.0769 kcal/mol (9223.7632 without restraints) Performing minimization step: 1495. Total energy = 9230.1526 kcal/mol (9219.8415 without restraints) Performing minimization step: 1496. Total energy = 9226.2326 kcal/mol (9215.9240 without restraints) Performing minimization step: 1497. Total energy = 9222.3164 kcal/mol (9212.0103 without restraints) Performing minimization step: 1498. Total energy = 9218.4041 kcal/mol (9208.1006 without restraints) Performing minimization step: 1499. Total energy = 9214.4964 kcal/mol (9204.1954 without restraints) Performing minimization step: 1500. Total energy = 9210.5930 kcal/mol (9200.2946 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 9206.6938 kcal/mol (9196.3979 without restraints) Performing minimization step: 1502. Total energy = 9202.7989 kcal/mol (9192.5055 without restraints) Performing minimization step: 1503. Total energy = 9198.9079 kcal/mol (9188.6171 without restraints) Performing minimization step: 1504. Total energy = 9195.0212 kcal/mol (9184.7328 without restraints) Performing minimization step: 1505. Total energy = 9191.1387 kcal/mol (9180.8529 without restraints) Performing minimization step: 1506. Total energy = 9187.2596 kcal/mol (9176.9763 without restraints) Performing minimization step: 1507. Total energy = 9183.3848 kcal/mol (9173.1040 without restraints) Performing minimization step: 1508. Total energy = 9179.5143 kcal/mol (9169.2361 without restraints) Performing minimization step: 1509. Total energy = 9175.6477 kcal/mol (9165.3720 without restraints) Performing minimization step: 1510. Total energy = 9171.7854 kcal/mol (9161.5122 without restraints) Performing minimization step: 1511. Total energy = 9167.9269 kcal/mol (9157.6562 without restraints) Performing minimization step: 1512. Total energy = 9164.0722 kcal/mol (9153.8041 without restraints) Performing minimization step: 1513. Total energy = 9160.2220 kcal/mol (9149.9564 without restraints) Performing minimization step: 1514. Total energy = 9156.3753 kcal/mol (9146.1122 without restraints) Performing minimization step: 1515. Total energy = 9152.5328 kcal/mol (9142.2722 without restraints) Performing minimization step: 1516. Total energy = 9148.6946 kcal/mol (9138.4366 without restraints) Performing minimization step: 1517. Total energy = 9144.8602 kcal/mol (9134.6046 without restraints) Performing minimization step: 1518. Total energy = 9141.0304 kcal/mol (9130.7774 without restraints) Performing minimization step: 1519. Total energy = 9137.2043 kcal/mol (9126.9538 without restraints) Performing minimization step: 1520. Total energy = 9133.3821 kcal/mol (9123.1342 without restraints) Performing minimization step: 1521. Total energy = 9129.5637 kcal/mol (9119.3182 without restraints) Performing minimization step: 1522. Total energy = 9125.7498 kcal/mol (9115.5068 without restraints) Performing minimization step: 1523. Total energy = 9121.9394 kcal/mol (9111.6990 without restraints) Performing minimization step: 1524. Total energy = 9118.1331 kcal/mol (9107.8952 without restraints) Performing minimization step: 1525. Total energy = 9114.3309 kcal/mol (9104.0955 without restraints) Performing minimization step: 1526. Total energy = 9110.5324 kcal/mol (9100.2996 without restraints) Performing minimization step: 1527. Total energy = 9106.7379 kcal/mol (9096.5075 without restraints) Performing minimization step: 1528. Total energy = 9102.9475 kcal/mol (9092.7198 without restraints) Performing minimization step: 1529. Total energy = 9099.1612 kcal/mol (9088.9359 without restraints) Performing minimization step: 1530. Total energy = 9095.3785 kcal/mol (9085.1557 without restraints) Performing minimization step: 1531. Total energy = 9091.5996 kcal/mol (9081.3794 without restraints) Performing minimization step: 1532. Total energy = 9087.8247 kcal/mol (9077.6069 without restraints) Performing minimization step: 1533. Total energy = 9084.0541 kcal/mol (9073.8389 without restraints) Performing minimization step: 1534. Total energy = 9080.2870 kcal/mol (9070.0742 without restraints) Performing minimization step: 1535. Total energy = 9076.5240 kcal/mol (9066.3137 without restraints) Performing minimization step: 1536. Total energy = 9072.7646 kcal/mol (9062.5568 without restraints) Performing minimization step: 1537. Total energy = 9069.0091 kcal/mol (9058.8038 without restraints) Performing minimization step: 1538. Total energy = 9065.2572 kcal/mol (9055.0544 without restraints) Performing minimization step: 1539. Total energy = 9061.5098 kcal/mol (9051.3095 without restraints) Performing minimization step: 1540. Total energy = 9057.7669 kcal/mol (9047.5692 without restraints) Performing minimization step: 1541. Total energy = 9054.0267 kcal/mol (9043.8315 without restraints) Performing minimization step: 1542. Total energy = 9050.2904 kcal/mol (9040.0977 without restraints) Performing minimization step: 1543. Total energy = 9046.5579 kcal/mol (9036.3677 without restraints) Performing minimization step: 1544. Total energy = 9042.8296 kcal/mol (9032.6420 without restraints) Performing minimization step: 1545. Total energy = 9039.1057 kcal/mol (9028.9205 without restraints) Performing minimization step: 1546. Total energy = 9035.3848 kcal/mol (9025.2021 without restraints) Performing minimization step: 1547. Total energy = 9031.6672 kcal/mol (9021.4870 without restraints) Performing minimization step: 1548. Total energy = 9027.9541 kcal/mol (9017.7764 without restraints) Performing minimization step: 1549. Total energy = 9024.2443 kcal/mol (9014.0690 without restraints) Performing minimization step: 1550. Total energy = 9020.5383 kcal/mol (9010.3656 without restraints) Performing minimization step: 1551. Total energy = 9016.8362 kcal/mol (9006.6660 without restraints) Performing minimization step: 1552. Total energy = 9013.1380 kcal/mol (9002.9704 without restraints) Performing minimization step: 1553. Total energy = 9009.4437 kcal/mol (8999.2785 without restraints) Performing minimization step: 1554. Total energy = 9005.7531 kcal/mol (8995.5903 without restraints) Performing minimization step: 1555. Total energy = 9002.0658 kcal/mol (8991.9055 without restraints) Performing minimization step: 1556. Total energy = 8998.3823 kcal/mol (8988.2244 without restraints) Performing minimization step: 1557. Total energy = 8994.7027 kcal/mol (8984.5474 without restraints) Performing minimization step: 1558. Total energy = 8991.0262 kcal/mol (8980.8734 without restraints) Performing minimization step: 1559. Total energy = 8987.3538 kcal/mol (8977.2036 without restraints) Performing minimization step: 1560. Total energy = 8983.6853 kcal/mol (8973.5376 without restraints) Performing minimization step: 1561. Total energy = 8980.0211 kcal/mol (8969.8759 without restraints) Performing minimization step: 1562. Total energy = 8976.3604 kcal/mol (8966.2176 without restraints) Performing minimization step: 1563. Total energy = 8972.7028 kcal/mol (8962.5625 without restraints) Performing minimization step: 1564. Total energy = 8969.0488 kcal/mol (8958.9110 without restraints) Performing minimization step: 1565. Total energy = 8965.3986 kcal/mol (8955.2633 without restraints) Performing minimization step: 1566. Total energy = 8961.7522 kcal/mol (8951.6192 without restraints) Performing minimization step: 1567. Total energy = 8958.1092 kcal/mol (8947.9789 without restraints) Performing minimization step: 1568. Total energy = 8954.4698 kcal/mol (8944.3419 without restraints) Performing minimization step: 1569. Total energy = 8950.8344 kcal/mol (8940.7089 without restraints) Performing minimization step: 1570. Total energy = 8947.2024 kcal/mol (8937.0795 without restraints) Performing minimization step: 1571. Total energy = 8943.5740 kcal/mol (8933.4537 without restraints) Performing minimization step: 1572. Total energy = 8939.9495 kcal/mol (8929.8315 without restraints) Performing minimization step: 1573. Total energy = 8936.3283 kcal/mol (8926.2128 without restraints) Performing minimization step: 1574. Total energy = 8932.7109 kcal/mol (8922.5979 without restraints) Performing minimization step: 1575. Total energy = 8929.0970 kcal/mol (8918.9865 without restraints) Performing minimization step: 1576. Total energy = 8925.4867 kcal/mol (8915.3787 without restraints) Performing minimization step: 1577. Total energy = 8921.8801 kcal/mol (8911.7746 without restraints) Performing minimization step: 1578. Total energy = 8918.2771 kcal/mol (8908.1741 without restraints) Performing minimization step: 1579. Total energy = 8914.6776 kcal/mol (8904.5770 without restraints) Performing minimization step: 1580. Total energy = 8911.0810 kcal/mol (8900.9829 without restraints) Performing minimization step: 1581. Total energy = 8907.4885 kcal/mol (8897.3928 without restraints) Performing minimization step: 1582. Total energy = 8903.8997 kcal/mol (8893.8065 without restraints) Performing minimization step: 1583. Total energy = 8900.3143 kcal/mol (8890.2236 without restraints) Performing minimization step: 1584. Total energy = 8896.7330 kcal/mol (8886.6447 without restraints) Performing minimization step: 1585. Total energy = 8893.1540 kcal/mol (8883.0682 without restraints) Performing minimization step: 1586. Total energy = 8889.5792 kcal/mol (8879.4960 without restraints) Performing minimization step: 1587. Total energy = 8886.0081 kcal/mol (8875.9273 without restraints) Performing minimization step: 1588. Total energy = 8882.4405 kcal/mol (8872.3621 without restraints) Performing minimization step: 1589. Total energy = 8878.8761 kcal/mol (8868.8002 without restraints) Performing minimization step: 1590. Total energy = 8875.3151 kcal/mol (8865.2417 without restraints) Performing minimization step: 1591. Total energy = 8871.7575 kcal/mol (8861.6866 without restraints) Performing minimization step: 1592. Total energy = 8868.2037 kcal/mol (8858.1352 without restraints) Performing minimization step: 1593. Total energy = 8864.6532 kcal/mol (8854.5872 without restraints) Performing minimization step: 1594. Total energy = 8861.1062 kcal/mol (8851.0426 without restraints) Performing minimization step: 1595. Total energy = 8857.5626 kcal/mol (8847.5015 without restraints) Performing minimization step: 1596. Total energy = 8854.0225 kcal/mol (8843.9639 without restraints) Performing minimization step: 1597. Total energy = 8850.4859 kcal/mol (8840.4297 without restraints) Performing minimization step: 1598. Total energy = 8846.9526 kcal/mol (8836.8989 without restraints) Performing minimization step: 1599. Total energy = 8843.4229 kcal/mol (8833.3716 without restraints) Performing minimization step: 1600. Total energy = 8839.8965 kcal/mol (8829.8477 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 8836.3734 kcal/mol (8826.3271 without restraints) Performing minimization step: 1602. Total energy = 8832.8539 kcal/mol (8822.8101 without restraints) Performing minimization step: 1603. Total energy = 8829.3378 kcal/mol (8819.2964 without restraints) Performing minimization step: 1604. Total energy = 8825.8250 kcal/mol (8815.7859 without restraints) Performing minimization step: 1605. Total energy = 8822.3157 kcal/mol (8812.2793 without restraints) Performing minimization step: 1606. Total energy = 8818.8098 kcal/mol (8808.7759 without restraints) Performing minimization step: 1607. Total energy = 8815.3073 kcal/mol (8805.2755 without restraints) Performing minimization step: 1608. Total energy = 8811.8080 kcal/mol (8801.7789 without restraints) Performing minimization step: 1609. Total energy = 8808.3122 kcal/mol (8798.2855 without restraints) Performing minimization step: 1610. Total energy = 8804.8197 kcal/mol (8794.7955 without restraints) Performing minimization step: 1611. Total energy = 8801.3302 kcal/mol (8791.3084 without restraints) Performing minimization step: 1612. Total energy = 8797.8443 kcal/mol (8787.8250 without restraints) Performing minimization step: 1613. Total energy = 8794.3616 kcal/mol (8784.3447 without restraints) Performing minimization step: 1614. Total energy = 8790.8820 kcal/mol (8780.8675 without restraints) Performing minimization step: 1615. Total energy = 8787.4066 kcal/mol (8777.3947 without restraints) Performing minimization step: 1616. Total energy = 8783.9340 kcal/mol (8773.9243 without restraints) Performing minimization step: 1617. Total energy = 8780.4644 kcal/mol (8770.4573 without restraints) Performing minimization step: 1618. Total energy = 8776.9982 kcal/mol (8766.9935 without restraints) Performing minimization step: 1619. Total energy = 8773.5353 kcal/mol (8763.5330 without restraints) Performing minimization step: 1620. Total energy = 8770.0755 kcal/mol (8760.0756 without restraints) Performing minimization step: 1621. Total energy = 8766.6191 kcal/mol (8756.6217 without restraints) Performing minimization step: 1622. Total energy = 8763.1660 kcal/mol (8753.1712 without restraints) Performing minimization step: 1623. Total energy = 8759.7162 kcal/mol (8749.7237 without restraints) Performing minimization step: 1624. Total energy = 8756.2696 kcal/mol (8746.2796 without restraints) Performing minimization step: 1625. Total energy = 8752.8260 kcal/mol (8742.8383 without restraints) Performing minimization step: 1626. Total energy = 8749.3858 kcal/mol (8739.4006 without restraints) Performing minimization step: 1627. Total energy = 8745.9488 kcal/mol (8735.9661 without restraints) Performing minimization step: 1628. Total energy = 8742.5156 kcal/mol (8732.5354 without restraints) Performing minimization step: 1629. Total energy = 8739.0852 kcal/mol (8729.1073 without restraints) Performing minimization step: 1630. Total energy = 8735.6580 kcal/mol (8725.6826 without restraints) Performing minimization step: 1631. Total energy = 8732.2345 kcal/mol (8722.2615 without restraints) Performing minimization step: 1632. Total energy = 8728.8134 kcal/mol (8718.8428 without restraints) Performing minimization step: 1633. Total energy = 8725.3956 kcal/mol (8715.4274 without restraints) Performing minimization step: 1634. Total energy = 8721.9812 kcal/mol (8712.0155 without restraints) Performing minimization step: 1635. Total energy = 8718.5698 kcal/mol (8708.6064 without restraints) Performing minimization step: 1636. Total energy = 8715.1617 kcal/mol (8705.2008 without restraints) Performing minimization step: 1637. Total energy = 8711.7567 kcal/mol (8701.7982 without restraints) Performing minimization step: 1638. Total energy = 8708.3547 kcal/mol (8698.3988 without restraints) Performing minimization step: 1639. Total energy = 8704.9561 kcal/mol (8695.0025 without restraints) Performing minimization step: 1640. Total energy = 8701.5600 kcal/mol (8691.6088 without restraints) Performing minimization step: 1641. Total energy = 8698.1673 kcal/mol (8688.2185 without restraints) Performing minimization step: 1642. Total energy = 8694.7780 kcal/mol (8684.8317 without restraints) Performing minimization step: 1643. Total energy = 8691.3917 kcal/mol (8681.4478 without restraints) Performing minimization step: 1644. Total energy = 8688.0084 kcal/mol (8678.0669 without restraints) Performing minimization step: 1645. Total energy = 8684.6284 kcal/mol (8674.6892 without restraints) Performing minimization step: 1646. Total energy = 8681.2510 kcal/mol (8671.3143 without restraints) Performing minimization step: 1647. Total energy = 8677.8766 kcal/mol (8667.9423 without restraints) Performing minimization step: 1648. Total energy = 8674.5054 kcal/mol (8664.5736 without restraints) Performing minimization step: 1649. Total energy = 8671.1377 kcal/mol (8661.2083 without restraints) Performing minimization step: 1650. Total energy = 8667.7728 kcal/mol (8657.8458 without restraints) Performing minimization step: 1651. Total energy = 8664.4110 kcal/mol (8654.4866 without restraints) Performing minimization step: 1652. Total energy = 8661.0524 kcal/mol (8651.1303 without restraints) Performing minimization step: 1653. Total energy = 8657.6970 kcal/mol (8647.7773 without restraints) Performing minimization step: 1654. Total energy = 8654.3441 kcal/mol (8644.4266 without restraints) Performing minimization step: 1655. Total energy = 8650.9944 kcal/mol (8641.0795 without restraints) Performing minimization step: 1656. Total energy = 8647.6478 kcal/mol (8637.7353 without restraints) Performing minimization step: 1657. Total energy = 8644.3043 kcal/mol (8634.3941 without restraints) Performing minimization step: 1658. Total energy = 8640.9636 kcal/mol (8631.0559 without restraints) Performing minimization step: 1659. Total energy = 8637.6262 kcal/mol (8627.7211 without restraints) Performing minimization step: 1660. Total energy = 8634.2918 kcal/mol (8624.3889 without restraints) Performing minimization step: 1661. Total energy = 8630.9603 kcal/mol (8621.0598 without restraints) Performing minimization step: 1662. Total energy = 8627.6318 kcal/mol (8617.7338 without restraints) Performing minimization step: 1663. Total energy = 8624.3062 kcal/mol (8614.4105 without restraints) Performing minimization step: 1664. Total energy = 8620.9836 kcal/mol (8611.0904 without restraints) Performing minimization step: 1665. Total energy = 8617.6645 kcal/mol (8607.7738 without restraints) Performing minimization step: 1666. Total energy = 8614.3479 kcal/mol (8604.4593 without restraints) Performing minimization step: 1667. Total energy = 8611.0345 kcal/mol (8601.1484 without restraints) Performing minimization step: 1668. Total energy = 8607.7236 kcal/mol (8597.8399 without restraints) Performing minimization step: 1669. Total energy = 8604.4157 kcal/mol (8594.5345 without restraints) Performing minimization step: 1670. Total energy = 8601.1108 kcal/mol (8591.2320 without restraints) Performing minimization step: 1671. Total energy = 8597.8086 kcal/mol (8587.9320 without restraints) Performing minimization step: 1672. Total energy = 8594.5094 kcal/mol (8584.6353 without restraints) Performing minimization step: 1673. Total energy = 8591.2138 kcal/mol (8581.3420 without restraints) Performing minimization step: 1674. Total energy = 8587.9202 kcal/mol (8578.0508 without restraints) Performing minimization step: 1675. Total energy = 8584.6299 kcal/mol (8574.7630 without restraints) Performing minimization step: 1676. Total energy = 8581.3421 kcal/mol (8571.4776 without restraints) Performing minimization step: 1677. Total energy = 8578.0575 kcal/mol (8568.1953 without restraints) Performing minimization step: 1678. Total energy = 8574.7754 kcal/mol (8564.9156 without restraints) Performing minimization step: 1679. Total energy = 8571.4961 kcal/mol (8561.6386 without restraints) Performing minimization step: 1680. Total energy = 8568.2198 kcal/mol (8558.3647 without restraints) Performing minimization step: 1681. Total energy = 8564.9467 kcal/mol (8555.0941 without restraints) Performing minimization step: 1682. Total energy = 8561.6763 kcal/mol (8551.8261 without restraints) Performing minimization step: 1683. Total energy = 8558.4088 kcal/mol (8548.5608 without restraints) Performing minimization step: 1684. Total energy = 8555.1442 kcal/mol (8545.2987 without restraints) Performing minimization step: 1685. Total energy = 8551.8822 kcal/mol (8542.0391 without restraints) Performing minimization step: 1686. Total energy = 8548.6228 kcal/mol (8538.7820 without restraints) Performing minimization step: 1687. Total energy = 8545.3665 kcal/mol (8535.5283 without restraints) Performing minimization step: 1688. Total energy = 8542.1131 kcal/mol (8532.2770 without restraints) Performing minimization step: 1689. Total energy = 8538.8621 kcal/mol (8529.0284 without restraints) Performing minimization step: 1690. Total energy = 8535.6138 kcal/mol (8525.7825 without restraints) Performing minimization step: 1691. Total energy = 8532.3683 kcal/mol (8522.5393 without restraints) Performing minimization step: 1692. Total energy = 8529.1257 kcal/mol (8519.2992 without restraints) Performing minimization step: 1693. Total energy = 8525.8859 kcal/mol (8516.0617 without restraints) Performing minimization step: 1694. Total energy = 8522.6487 kcal/mol (8512.8269 without restraints) Performing minimization step: 1695. Total energy = 8519.4144 kcal/mol (8509.5949 without restraints) Performing minimization step: 1696. Total energy = 8516.1828 kcal/mol (8506.3657 without restraints) Performing minimization step: 1697. Total energy = 8512.9540 kcal/mol (8503.1392 without restraints) Performing minimization step: 1698. Total energy = 8509.7279 kcal/mol (8499.9156 without restraints) Performing minimization step: 1699. Total energy = 8506.5045 kcal/mol (8496.6945 without restraints) Performing minimization step: 1700. Total energy = 8503.2840 kcal/mol (8493.4764 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 8500.0661 kcal/mol (8490.2608 without restraints) Performing minimization step: 1702. Total energy = 8496.8513 kcal/mol (8487.0484 without restraints) Performing minimization step: 1703. Total energy = 8493.6387 kcal/mol (8483.8382 without restraints) Performing minimization step: 1704. Total energy = 8490.4289 kcal/mol (8480.6307 without restraints) Performing minimization step: 1705. Total energy = 8487.2218 kcal/mol (8477.4259 without restraints) Performing minimization step: 1706. Total energy = 8484.0171 kcal/mol (8474.2235 without restraints) Performing minimization step: 1707. Total energy = 8480.8152 kcal/mol (8471.0241 without restraints) Performing minimization step: 1708. Total energy = 8477.6160 kcal/mol (8467.8272 without restraints) Performing minimization step: 1709. Total energy = 8474.4196 kcal/mol (8464.6332 without restraints) Performing minimization step: 1710. Total energy = 8471.2258 kcal/mol (8461.4416 without restraints) Performing minimization step: 1711. Total energy = 8468.0351 kcal/mol (8458.2534 without restraints) Performing minimization step: 1712. Total energy = 8464.8466 kcal/mol (8455.0672 without restraints) Performing minimization step: 1713. Total energy = 8461.6609 kcal/mol (8451.8839 without restraints) Performing minimization step: 1714. Total energy = 8458.4775 kcal/mol (8448.7029 without restraints) Performing minimization step: 1715. Total energy = 8455.2968 kcal/mol (8445.5245 without restraints) Performing minimization step: 1716. Total energy = 8452.1183 kcal/mol (8442.3484 without restraints) Performing minimization step: 1717. Total energy = 8448.9425 kcal/mol (8439.1748 without restraints) Performing minimization step: 1718. Total energy = 8445.7696 kcal/mol (8436.0043 without restraints) Performing minimization step: 1719. Total energy = 8442.5996 kcal/mol (8432.8367 without restraints) Performing minimization step: 1720. Total energy = 8439.4319 kcal/mol (8429.6713 without restraints) Performing minimization step: 1721. Total energy = 8436.2669 kcal/mol (8426.5087 without restraints) Performing minimization step: 1722. Total energy = 8433.1046 kcal/mol (8423.3487 without restraints) Performing minimization step: 1723. Total energy = 8429.9450 kcal/mol (8420.1914 without restraints) Performing minimization step: 1724. Total energy = 8426.7875 kcal/mol (8417.0362 without restraints) Performing minimization step: 1725. Total energy = 8423.6326 kcal/mol (8413.8836 without restraints) Performing minimization step: 1726. Total energy = 8420.4802 kcal/mol (8410.7336 without restraints) Performing minimization step: 1727. Total energy = 8417.3308 kcal/mol (8407.5865 without restraints) Performing minimization step: 1728. Total energy = 8414.1832 kcal/mol (8404.4413 without restraints) Performing minimization step: 1729. Total energy = 8411.0393 kcal/mol (8401.2997 without restraints) Performing minimization step: 1730. Total energy = 8407.8974 kcal/mol (8398.1602 without restraints) Performing minimization step: 1731. Total energy = 8404.7575 kcal/mol (8395.0225 without restraints) Performing minimization step: 1732. Total energy = 8401.6203 kcal/mol (8391.8875 without restraints) Performing minimization step: 1733. Total energy = 8398.4856 kcal/mol (8388.7553 without restraints) Performing minimization step: 1734. Total energy = 8395.3534 kcal/mol (8385.6254 without restraints) Performing minimization step: 1735. Total energy = 8392.2234 kcal/mol (8382.4978 without restraints) Performing minimization step: 1736. Total energy = 8389.0963 kcal/mol (8379.3730 without restraints) Performing minimization step: 1737. Total energy = 8385.9714 kcal/mol (8376.2503 without restraints) Performing minimization step: 1738. Total energy = 8382.8489 kcal/mol (8373.1302 without restraints) Performing minimization step: 1739. Total energy = 8379.7292 kcal/mol (8370.0129 without restraints) Performing minimization step: 1740. Total energy = 8376.6122 kcal/mol (8366.8982 without restraints) Performing minimization step: 1741. Total energy = 8373.4973 kcal/mol (8363.7855 without restraints) Performing minimization step: 1742. Total energy = 8370.3847 kcal/mol (8360.6752 without restraints) Performing minimization step: 1743. Total energy = 8367.2743 kcal/mol (8357.5672 without restraints) Performing minimization step: 1744. Total energy = 8364.1663 kcal/mol (8354.4616 without restraints) Performing minimization step: 1745. Total energy = 8361.0611 kcal/mol (8351.3586 without restraints) Performing minimization step: 1746. Total energy = 8357.9584 kcal/mol (8348.2583 without restraints) Performing minimization step: 1747. Total energy = 8354.8580 kcal/mol (8345.1601 without restraints) Performing minimization step: 1748. Total energy = 8351.7599 kcal/mol (8342.0643 without restraints) Performing minimization step: 1749. Total energy = 8348.6645 kcal/mol (8338.9713 without restraints) Performing minimization step: 1750. Total energy = 8345.5710 kcal/mol (8335.8801 without restraints) Performing minimization step: 1751. Total energy = 8342.4804 kcal/mol (8332.7918 without restraints) Performing minimization step: 1752. Total energy = 8339.3922 kcal/mol (8329.7058 without restraints) Performing minimization step: 1753. Total energy = 8336.3058 kcal/mol (8326.6218 without restraints) Performing minimization step: 1754. Total energy = 8333.2220 kcal/mol (8323.5403 without restraints) Performing minimization step: 1755. Total energy = 8330.1410 kcal/mol (8320.4616 without restraints) Performing minimization step: 1756. Total energy = 8327.0623 kcal/mol (8317.3851 without restraints) Performing minimization step: 1757. Total energy = 8323.9857 kcal/mol (8314.3108 without restraints) Performing minimization step: 1758. Total energy = 8320.9115 kcal/mol (8311.2390 without restraints) Performing minimization step: 1759. Total energy = 8317.8394 kcal/mol (8308.1692 without restraints) Performing minimization step: 1760. Total energy = 8314.7695 kcal/mol (8305.1016 without restraints) Performing minimization step: 1761. Total energy = 8311.7020 kcal/mol (8302.0364 without restraints) Performing minimization step: 1762. Total energy = 8308.6375 kcal/mol (8298.9742 without restraints) Performing minimization step: 1763. Total energy = 8305.5748 kcal/mol (8295.9138 without restraints) Performing minimization step: 1764. Total energy = 8302.5147 kcal/mol (8292.8560 without restraints) Performing minimization step: 1765. Total energy = 8299.4563 kcal/mol (8289.7999 without restraints) Performing minimization step: 1766. Total energy = 8296.4009 kcal/mol (8286.7467 without restraints) Performing minimization step: 1767. Total energy = 8293.3474 kcal/mol (8283.6955 without restraints) Performing minimization step: 1768. Total energy = 8290.2961 kcal/mol (8280.6465 without restraints) Performing minimization step: 1769. Total energy = 8287.2469 kcal/mol (8277.5994 without restraints) Performing minimization step: 1770. Total energy = 8284.1999 kcal/mol (8274.5549 without restraints) Performing minimization step: 1771. Total energy = 8281.1554 kcal/mol (8271.5126 without restraints) Performing minimization step: 1772. Total energy = 8278.1130 kcal/mol (8268.4726 without restraints) Performing minimization step: 1773. Total energy = 8275.0733 kcal/mol (8265.4351 without restraints) Performing minimization step: 1774. Total energy = 8272.0353 kcal/mol (8262.3993 without restraints) Performing minimization step: 1775. Total energy = 8268.9998 kcal/mol (8259.3661 without restraints) Performing minimization step: 1776. Total energy = 8265.9664 kcal/mol (8256.3350 without restraints) Performing minimization step: 1777. Total energy = 8262.9355 kcal/mol (8253.3064 without restraints) Performing minimization step: 1778. Total energy = 8259.9067 kcal/mol (8250.2799 without restraints) Performing minimization step: 1779. Total energy = 8256.8800 kcal/mol (8247.2556 without restraints) Performing minimization step: 1780. Total energy = 8253.8556 kcal/mol (8244.2333 without restraints) Performing minimization step: 1781. Total energy = 8250.8329 kcal/mol (8241.2129 without restraints) Performing minimization step: 1782. Total energy = 8247.8128 kcal/mol (8238.1950 without restraints) Performing minimization step: 1783. Total energy = 8244.7949 kcal/mol (8235.1794 without restraints) Performing minimization step: 1784. Total energy = 8241.7790 kcal/mol (8232.1656 without restraints) Performing minimization step: 1785. Total energy = 8238.7651 kcal/mol (8229.1541 without restraints) Performing minimization step: 1786. Total energy = 8235.7539 kcal/mol (8226.1452 without restraints) Performing minimization step: 1787. Total energy = 8232.7447 kcal/mol (8223.1383 without restraints) Performing minimization step: 1788. Total energy = 8229.7385 kcal/mol (8220.1344 without restraints) Performing minimization step: 1789. Total energy = 8226.7339 kcal/mol (8217.1320 without restraints) Performing minimization step: 1790. Total energy = 8223.7314 kcal/mol (8214.1317 without restraints) Performing minimization step: 1791. Total energy = 8220.7310 kcal/mol (8211.1337 without restraints) Performing minimization step: 1792. Total energy = 8217.7325 kcal/mol (8208.1373 without restraints) Performing minimization step: 1793. Total energy = 8214.7362 kcal/mol (8205.1433 without restraints) Performing minimization step: 1794. Total energy = 8211.7421 kcal/mol (8202.1514 without restraints) Performing minimization step: 1795. Total energy = 8208.7499 kcal/mol (8199.1614 without restraints) Performing minimization step: 1796. Total energy = 8205.7603 kcal/mol (8196.1741 without restraints) Performing minimization step: 1797. Total energy = 8202.7724 kcal/mol (8193.1885 without restraints) Performing minimization step: 1798. Total energy = 8199.7871 kcal/mol (8190.2055 without restraints) Performing minimization step: 1799. Total energy = 8196.8039 kcal/mol (8187.2245 without restraints) Performing minimization step: 1800. Total energy = 8193.8217 kcal/mol (8184.2445 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 8190.8423 kcal/mol (8181.2673 without restraints) Performing minimization step: 1802. Total energy = 8187.8646 kcal/mol (8178.2919 without restraints) Performing minimization step: 1803. Total energy = 8184.8887 kcal/mol (8175.3183 without restraints) Performing minimization step: 1804. Total energy = 8181.9154 kcal/mol (8172.3471 without restraints) Performing minimization step: 1805. Total energy = 8178.9440 kcal/mol (8169.3779 without restraints) Performing minimization step: 1806. Total energy = 8175.9747 kcal/mol (8166.4110 without restraints) Performing minimization step: 1807. Total energy = 8173.0074 kcal/mol (8163.4459 without restraints) Performing minimization step: 1808. Total energy = 8170.0425 kcal/mol (8160.4833 without restraints) Performing minimization step: 1809. Total energy = 8167.0795 kcal/mol (8157.5224 without restraints) Performing minimization step: 1810. Total energy = 8164.1185 kcal/mol (8154.5637 without restraints) Performing minimization step: 1811. Total energy = 8161.1596 kcal/mol (8151.6070 without restraints) Performing minimization step: 1812. Total energy = 8158.2025 kcal/mol (8148.6521 without restraints) Performing minimization step: 1813. Total energy = 8155.2475 kcal/mol (8145.6994 without restraints) Performing minimization step: 1814. Total energy = 8152.2946 kcal/mol (8142.7487 without restraints) Performing minimization step: 1815. Total energy = 8149.3439 kcal/mol (8139.8004 without restraints) Performing minimization step: 1816. Total energy = 8146.3954 kcal/mol (8136.8540 without restraints) Performing minimization step: 1817. Total energy = 8143.4489 kcal/mol (8133.9097 without restraints) Performing minimization step: 1818. Total energy = 8140.5037 kcal/mol (8130.9668 without restraints) Performing minimization step: 1819. Total energy = 8137.5611 kcal/mol (8128.0263 without restraints) Performing minimization step: 1820. Total energy = 8134.6199 kcal/mol (8125.0874 without restraints) Performing minimization step: 1821. Total energy = 8131.6811 kcal/mol (8122.1509 without restraints) Performing minimization step: 1822. Total energy = 8128.7442 kcal/mol (8119.2161 without restraints) Performing minimization step: 1823. Total energy = 8125.8095 kcal/mol (8116.2836 without restraints) Performing minimization step: 1824. Total energy = 8122.8767 kcal/mol (8113.3532 without restraints) Performing minimization step: 1825. Total energy = 8119.9457 kcal/mol (8110.4244 without restraints) Performing minimization step: 1826. Total energy = 8117.0164 kcal/mol (8107.4971 without restraints) Performing minimization step: 1827. Total energy = 8114.0889 kcal/mol (8104.5719 without restraints) Performing minimization step: 1828. Total energy = 8111.1636 kcal/mol (8101.6488 without restraints) Performing minimization step: 1829. Total energy = 8108.2405 kcal/mol (8098.7278 without restraints) Performing minimization step: 1830. Total energy = 8105.3191 kcal/mol (8095.8086 without restraints) Performing minimization step: 1831. Total energy = 8102.3995 kcal/mol (8092.8913 without restraints) Performing minimization step: 1832. Total energy = 8099.4820 kcal/mol (8089.9760 without restraints) Performing minimization step: 1833. Total energy = 8096.5665 kcal/mol (8087.0628 without restraints) Performing minimization step: 1834. Total energy = 8093.6526 kcal/mol (8084.1510 without restraints) Performing minimization step: 1835. Total energy = 8090.7405 kcal/mol (8081.2411 without restraints) Performing minimization step: 1836. Total energy = 8087.8308 kcal/mol (8078.3336 without restraints) Performing minimization step: 1837. Total energy = 8084.9225 kcal/mol (8075.4276 without restraints) Performing minimization step: 1838. Total energy = 8082.0163 kcal/mol (8072.5234 without restraints) Performing minimization step: 1839. Total energy = 8079.1119 kcal/mol (8069.6213 without restraints) Performing minimization step: 1840. Total energy = 8076.2095 kcal/mol (8066.7211 without restraints) Performing minimization step: 1841. Total energy = 8073.3094 kcal/mol (8063.8233 without restraints) Performing minimization step: 1842. Total energy = 8070.4108 kcal/mol (8060.9267 without restraints) Performing minimization step: 1843. Total energy = 8067.5139 kcal/mol (8058.0321 without restraints) Performing minimization step: 1844. Total energy = 8064.6193 kcal/mol (8055.1397 without restraints) Performing minimization step: 1845. Total energy = 8061.7262 kcal/mol (8052.2488 without restraints) Performing minimization step: 1846. Total energy = 8058.8350 kcal/mol (8049.3597 without restraints) Performing minimization step: 1847. Total energy = 8055.9455 kcal/mol (8046.4723 without restraints) Performing minimization step: 1848. Total energy = 8053.0579 kcal/mol (8043.5871 without restraints) Performing minimization step: 1849. Total energy = 8050.1722 kcal/mol (8040.7035 without restraints) Performing minimization step: 1850. Total energy = 8047.2882 kcal/mol (8037.8217 without restraints) Performing minimization step: 1851. Total energy = 8044.4062 kcal/mol (8034.9418 without restraints) Performing minimization step: 1852. Total energy = 8041.5261 kcal/mol (8032.0640 without restraints) Performing minimization step: 1853. Total energy = 8038.6476 kcal/mol (8029.1877 without restraints) Performing minimization step: 1854. Total energy = 8035.7711 kcal/mol (8026.3133 without restraints) Performing minimization step: 1855. Total energy = 8032.8968 kcal/mol (8023.4412 without restraints) Performing minimization step: 1856. Total energy = 8030.0239 kcal/mol (8020.5704 without restraints) Performing minimization step: 1857. Total energy = 8027.1526 kcal/mol (8017.7013 without restraints) Performing minimization step: 1858. Total energy = 8024.2829 kcal/mol (8014.8338 without restraints) Performing minimization step: 1859. Total energy = 8021.4157 kcal/mol (8011.9688 without restraints) Performing minimization step: 1860. Total energy = 8018.5496 kcal/mol (8009.1049 without restraints) Performing minimization step: 1861. Total energy = 8015.6855 kcal/mol (8006.2429 without restraints) Performing minimization step: 1862. Total energy = 8012.8228 kcal/mol (8003.3824 without restraints) Performing minimization step: 1863. Total energy = 8009.9622 kcal/mol (8000.5239 without restraints) Performing minimization step: 1864. Total energy = 8007.1034 kcal/mol (7997.6673 without restraints) Performing minimization step: 1865. Total energy = 8004.2461 kcal/mol (7994.8122 without restraints) Performing minimization step: 1866. Total energy = 8001.3912 kcal/mol (7991.9595 without restraints) Performing minimization step: 1867. Total energy = 7998.5379 kcal/mol (7989.1083 without restraints) Performing minimization step: 1868. Total energy = 7995.6859 kcal/mol (7986.2585 without restraints) Performing minimization step: 1869. Total energy = 7992.8358 kcal/mol (7983.4105 without restraints) Performing minimization step: 1870. Total energy = 7989.9868 kcal/mol (7980.5636 without restraints) Performing minimization step: 1871. Total energy = 7987.1403 kcal/mol (7977.7193 without restraints) Performing minimization step: 1872. Total energy = 7984.2954 kcal/mol (7974.8766 without restraints) Performing minimization step: 1873. Total energy = 7981.4522 kcal/mol (7972.0356 without restraints) Performing minimization step: 1874. Total energy = 7978.6113 kcal/mol (7969.1968 without restraints) Performing minimization step: 1875. Total energy = 7975.7716 kcal/mol (7966.3592 without restraints) Performing minimization step: 1876. Total energy = 7972.9338 kcal/mol (7963.5236 without restraints) Performing minimization step: 1877. Total energy = 7970.0975 kcal/mol (7960.6894 without restraints) Performing minimization step: 1878. Total energy = 7967.2627 kcal/mol (7957.8568 without restraints) Performing minimization step: 1879. Total energy = 7964.4296 kcal/mol (7955.0258 without restraints) Performing minimization step: 1880. Total energy = 7961.5986 kcal/mol (7952.1970 without restraints) Performing minimization step: 1881. Total energy = 7958.7691 kcal/mol (7949.3696 without restraints) Performing minimization step: 1882. Total energy = 7955.9419 kcal/mol (7946.5446 without restraints) Performing minimization step: 1883. Total energy = 7953.1158 kcal/mol (7943.7206 without restraints) Performing minimization step: 1884. Total energy = 7950.2916 kcal/mol (7940.8986 without restraints) Performing minimization step: 1885. Total energy = 7947.4696 kcal/mol (7938.0788 without restraints) Performing minimization step: 1886. Total energy = 7944.6484 kcal/mol (7935.2596 without restraints) Performing minimization step: 1887. Total energy = 7941.8289 kcal/mol (7932.4423 without restraints) Performing minimization step: 1888. Total energy = 7939.0113 kcal/mol (7929.6269 without restraints) Performing minimization step: 1889. Total energy = 7936.1952 kcal/mol (7926.8128 without restraints) Performing minimization step: 1890. Total energy = 7933.3807 kcal/mol (7924.0005 without restraints) Performing minimization step: 1891. Total energy = 7930.5682 kcal/mol (7921.1902 without restraints) Performing minimization step: 1892. Total energy = 7927.7568 kcal/mol (7918.3809 without restraints) Performing minimization step: 1893. Total energy = 7924.9472 kcal/mol (7915.5732 without restraints) Performing minimization step: 1894. Total energy = 7922.1391 kcal/mol (7912.7674 without restraints) Performing minimization step: 1895. Total energy = 7919.3328 kcal/mol (7909.9632 without restraints) Performing minimization step: 1896. Total energy = 7916.5282 kcal/mol (7907.1606 without restraints) Performing minimization step: 1897. Total energy = 7913.7252 kcal/mol (7904.3599 without restraints) Performing minimization step: 1898. Total energy = 7910.9239 kcal/mol (7901.5609 without restraints) Performing minimization step: 1899. Total energy = 7908.1238 kcal/mol (7898.7627 without restraints) Performing minimization step: 1900. Total energy = 7905.3259 kcal/mol (7895.9669 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 7902.5294 kcal/mol (7893.1726 without restraints) Performing minimization step: 1902. Total energy = 7899.7343 kcal/mol (7890.3796 without restraints) Performing minimization step: 1903. Total energy = 7896.9403 kcal/mol (7887.5876 without restraints) Performing minimization step: 1904. Total energy = 7894.1485 kcal/mol (7884.7980 without restraints) Performing minimization step: 1905. Total energy = 7891.3586 kcal/mol (7882.0102 without restraints) Performing minimization step: 1906. Total energy = 7888.5702 kcal/mol (7879.2239 without restraints) Performing minimization step: 1907. Total energy = 7885.7832 kcal/mol (7876.4391 without restraints) Performing minimization step: 1908. Total energy = 7882.9985 kcal/mol (7873.6566 without restraints) Performing minimization step: 1909. Total energy = 7880.2148 kcal/mol (7870.8749 without restraints) Performing minimization step: 1910. Total energy = 7877.4330 kcal/mol (7868.0951 without restraints) Performing minimization step: 1911. Total energy = 7874.6523 kcal/mol (7865.3166 without restraints) Performing minimization step: 1912. Total energy = 7871.8732 kcal/mol (7862.5396 without restraints) Performing minimization step: 1913. Total energy = 7869.0961 kcal/mol (7859.7645 without restraints) Performing minimization step: 1914. Total energy = 7866.3204 kcal/mol (7856.9910 without restraints) Performing minimization step: 1915. Total energy = 7863.5460 kcal/mol (7854.2187 without restraints) Performing minimization step: 1916. Total energy = 7860.7732 kcal/mol (7851.4480 without restraints) Performing minimization step: 1917. Total energy = 7858.0021 kcal/mol (7848.6792 without restraints) Performing minimization step: 1918. Total energy = 7855.2325 kcal/mol (7845.9115 without restraints) Performing minimization step: 1919. Total energy = 7852.4644 kcal/mol (7843.1455 without restraints) Performing minimization step: 1920. Total energy = 7849.6981 kcal/mol (7840.3813 without restraints) Performing minimization step: 1921. Total energy = 7846.9329 kcal/mol (7837.6182 without restraints) Performing minimization step: 1922. Total energy = 7844.1695 kcal/mol (7834.8569 without restraints) Performing minimization step: 1923. Total energy = 7841.4076 kcal/mol (7832.0971 without restraints) Performing minimization step: 1924. Total energy = 7838.6473 kcal/mol (7829.3388 without restraints) Performing minimization step: 1925. Total energy = 7835.8885 kcal/mol (7826.5821 without restraints) Performing minimization step: 1926. Total energy = 7833.1309 kcal/mol (7823.8268 without restraints) Performing minimization step: 1927. Total energy = 7830.3750 kcal/mol (7821.0729 without restraints) Performing minimization step: 1928. Total energy = 7827.6205 kcal/mol (7818.3204 without restraints) Performing minimization step: 1929. Total energy = 7824.8677 kcal/mol (7815.5698 without restraints) Performing minimization step: 1930. Total energy = 7822.1166 kcal/mol (7812.8207 without restraints) Performing minimization step: 1931. Total energy = 7819.3665 kcal/mol (7810.0728 without restraints) Performing minimization step: 1932. Total energy = 7816.6183 kcal/mol (7807.3269 without restraints) Performing minimization step: 1933. Total energy = 7813.8717 kcal/mol (7804.5820 without restraints) Performing minimization step: 1934. Total energy = 7811.1266 kcal/mol (7801.8392 without restraints) Performing minimization step: 1935. Total energy = 7808.3830 kcal/mol (7799.0976 without restraints) Performing minimization step: 1936. Total energy = 7805.6407 kcal/mol (7796.3571 without restraints) Performing minimization step: 1937. Total energy = 7802.8999 kcal/mol (7793.6185 without restraints) Performing minimization step: 1938. Total energy = 7800.1604 kcal/mol (7790.8811 without restraints) Performing minimization step: 1939. Total energy = 7797.4223 kcal/mol (7788.1452 without restraints) Performing minimization step: 1940. Total energy = 7794.6859 kcal/mol (7785.4107 without restraints) Performing minimization step: 1941. Total energy = 7791.9509 kcal/mol (7782.6779 without restraints) Performing minimization step: 1942. Total energy = 7789.2175 kcal/mol (7779.9466 without restraints) Performing minimization step: 1943. Total energy = 7786.4854 kcal/mol (7777.2165 without restraints) Performing minimization step: 1944. Total energy = 7783.7550 kcal/mol (7774.4882 without restraints) Performing minimization step: 1945. Total energy = 7781.0260 kcal/mol (7771.7613 without restraints) Performing minimization step: 1946. Total energy = 7778.2979 kcal/mol (7769.0352 without restraints) Performing minimization step: 1947. Total energy = 7775.5717 kcal/mol (7766.3110 without restraints) Performing minimization step: 1948. Total energy = 7772.8470 kcal/mol (7763.5884 without restraints) Performing minimization step: 1949. Total energy = 7770.1237 kcal/mol (7760.8673 without restraints) Performing minimization step: 1950. Total energy = 7767.4019 kcal/mol (7758.1474 without restraints) Performing minimization step: 1951. Total energy = 7764.6815 kcal/mol (7755.4291 without restraints) Performing minimization step: 1952. Total energy = 7761.9622 kcal/mol (7752.7119 without restraints) Performing minimization step: 1953. Total energy = 7759.2448 kcal/mol (7749.9966 without restraints) Performing minimization step: 1954. Total energy = 7756.5285 kcal/mol (7747.2823 without restraints) Performing minimization step: 1955. Total energy = 7753.8140 kcal/mol (7744.5699 without restraints) Performing minimization step: 1956. Total energy = 7751.1010 kcal/mol (7741.8591 without restraints) Performing minimization step: 1957. Total energy = 7748.3892 kcal/mol (7739.1491 without restraints) Performing minimization step: 1958. Total energy = 7745.6789 kcal/mol (7736.4410 without restraints) Performing minimization step: 1959. Total energy = 7742.9702 kcal/mol (7733.7342 without restraints) Performing minimization step: 1960. Total energy = 7740.2624 kcal/mol (7731.0285 without restraints) Performing minimization step: 1961. Total energy = 7737.5566 kcal/mol (7728.3248 without restraints) Performing minimization step: 1962. Total energy = 7734.8519 kcal/mol (7725.6221 without restraints) Performing minimization step: 1963. Total energy = 7732.1486 kcal/mol (7722.9208 without restraints) Performing minimization step: 1964. Total energy = 7729.4468 kcal/mol (7720.2211 without restraints) Performing minimization step: 1965. Total energy = 7726.7465 kcal/mol (7717.5230 without restraints) Performing minimization step: 1966. Total energy = 7724.0476 kcal/mol (7714.8260 without restraints) Performing minimization step: 1967. Total energy = 7721.3501 kcal/mol (7712.1305 without restraints) Performing minimization step: 1968. Total energy = 7718.6538 kcal/mol (7709.4362 without restraints) Performing minimization step: 1969. Total energy = 7715.9588 kcal/mol (7706.7433 without restraints) Performing minimization step: 1970. Total energy = 7713.2654 kcal/mol (7704.0520 without restraints) Performing minimization step: 1971. Total energy = 7710.5735 kcal/mol (7701.3621 without restraints) Performing minimization step: 1972. Total energy = 7707.8826 kcal/mol (7698.6730 without restraints) Performing minimization step: 1973. Total energy = 7705.1931 kcal/mol (7695.9858 without restraints) Performing minimization step: 1974. Total energy = 7702.5052 kcal/mol (7693.2999 without restraints) Performing minimization step: 1975. Total energy = 7699.8187 kcal/mol (7690.6154 without restraints) Performing minimization step: 1976. Total energy = 7697.1336 kcal/mol (7687.9324 without restraints) Performing minimization step: 1977. Total energy = 7694.4499 kcal/mol (7685.2506 without restraints) Performing minimization step: 1978. Total energy = 7691.7676 kcal/mol (7682.5704 without restraints) Performing minimization step: 1979. Total energy = 7689.0863 kcal/mol (7679.8910 without restraints) Performing minimization step: 1980. Total energy = 7686.4070 kcal/mol (7677.2138 without restraints) Performing minimization step: 1981. Total energy = 7683.7285 kcal/mol (7674.5374 without restraints) Performing minimization step: 1982. Total energy = 7681.0513 kcal/mol (7671.8623 without restraints) Performing minimization step: 1983. Total energy = 7678.3758 kcal/mol (7669.1887 without restraints) Performing minimization step: 1984. Total energy = 7675.7017 kcal/mol (7666.5166 without restraints) Performing minimization step: 1985. Total energy = 7673.0287 kcal/mol (7663.8456 without restraints) Performing minimization step: 1986. Total energy = 7670.3569 kcal/mol (7661.1759 without restraints) Performing minimization step: 1987. Total energy = 7667.6866 kcal/mol (7658.5075 without restraints) Performing minimization step: 1988. Total energy = 7665.0181 kcal/mol (7655.8411 without restraints) Performing minimization step: 1989. Total energy = 7662.3507 kcal/mol (7653.1757 without restraints) Performing minimization step: 1990. Total energy = 7659.6848 kcal/mol (7650.5119 without restraints) Performing minimization step: 1991. Total energy = 7657.0200 kcal/mol (7647.8491 without restraints) Performing minimization step: 1992. Total energy = 7654.3567 kcal/mol (7645.1878 without restraints) Performing minimization step: 1993. Total energy = 7651.6949 kcal/mol (7642.5281 without restraints) Performing minimization step: 1994. Total energy = 7649.0344 kcal/mol (7639.8696 without restraints) Performing minimization step: 1995. Total energy = 7646.3754 kcal/mol (7637.2125 without restraints) Performing minimization step: 1996. Total energy = 7643.7174 kcal/mol (7634.5566 without restraints) Performing minimization step: 1997. Total energy = 7641.0610 kcal/mol (7631.9021 without restraints) Performing minimization step: 1998. Total energy = 7638.4060 kcal/mol (7629.2492 without restraints) Performing minimization step: 1999. Total energy = 7635.7516 kcal/mol (7626.5968 without restraints) Performing minimization step: 2000. Total energy = 7633.0989 kcal/mol (7623.9461 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 7630.4480 kcal/mol (7621.2971 without restraints) Performing minimization step: 2002. Total energy = 7627.7977 kcal/mol (7618.6489 without restraints) Performing minimization step: 2003. Total energy = 7625.1492 kcal/mol (7616.0024 without restraints) Performing minimization step: 2004. Total energy = 7622.5018 kcal/mol (7613.3570 without restraints) Performing minimization step: 2005. Total energy = 7619.8556 kcal/mol (7610.7128 without restraints) Performing minimization step: 2006. Total energy = 7617.2109 kcal/mol (7608.0700 without restraints) Performing minimization step: 2007. Total energy = 7614.5672 kcal/mol (7605.4284 without restraints) Performing minimization step: 2008. Total energy = 7611.9251 kcal/mol (7602.7883 without restraints) Performing minimization step: 2009. Total energy = 7609.2844 kcal/mol (7600.1496 without restraints) Performing minimization step: 2010. Total energy = 7606.6449 kcal/mol (7597.5121 without restraints) Performing minimization step: 2011. Total energy = 7604.0072 kcal/mol (7594.8765 without restraints) Performing minimization step: 2012. Total energy = 7601.3704 kcal/mol (7592.2416 without restraints) Performing minimization step: 2013. Total energy = 7598.7351 kcal/mol (7589.6083 without restraints) Performing minimization step: 2014. Total energy = 7596.1010 kcal/mol (7586.9761 without restraints) Performing minimization step: 2015. Total energy = 7593.4678 kcal/mol (7584.3450 without restraints) Performing minimization step: 2016. Total energy = 7590.8364 kcal/mol (7581.7155 without restraints) Performing minimization step: 2017. Total energy = 7588.2059 kcal/mol (7579.0869 without restraints) Performing minimization step: 2018. Total energy = 7585.5769 kcal/mol (7576.4600 without restraints) Performing minimization step: 2019. Total energy = 7582.9491 kcal/mol (7573.8342 without restraints) Performing minimization step: 2020. Total energy = 7580.3226 kcal/mol (7571.2097 without restraints) Performing minimization step: 2021. Total energy = 7577.6972 kcal/mol (7568.5862 without restraints) Performing minimization step: 2022. Total energy = 7575.0732 kcal/mol (7565.9643 without restraints) Performing minimization step: 2023. Total energy = 7572.4508 kcal/mol (7563.3439 without restraints) Performing minimization step: 2024. Total energy = 7569.8292 kcal/mol (7560.7242 without restraints) Performing minimization step: 2025. Total energy = 7567.2094 kcal/mol (7558.1064 without restraints) Performing minimization step: 2026. Total energy = 7564.5906 kcal/mol (7555.4896 without restraints) Performing minimization step: 2027. Total energy = 7561.9733 kcal/mol (7552.8743 without restraints) Performing minimization step: 2028. Total energy = 7559.3572 kcal/mol (7550.2601 without restraints) Performing minimization step: 2029. Total energy = 7556.7421 kcal/mol (7547.6469 without restraints) Performing minimization step: 2030. Total energy = 7554.1284 kcal/mol (7545.0353 without restraints) Performing minimization step: 2031. Total energy = 7551.5162 kcal/mol (7542.4250 without restraints) Performing minimization step: 2032. Total energy = 7548.9055 kcal/mol (7539.8163 without restraints) Performing minimization step: 2033. Total energy = 7546.2957 kcal/mol (7537.2084 without restraints) Performing minimization step: 2034. Total energy = 7543.6871 kcal/mol (7534.6018 without restraints) Performing minimization step: 2035. Total energy = 7541.0802 kcal/mol (7531.9969 without restraints) Performing minimization step: 2036. Total energy = 7538.4742 kcal/mol (7529.3929 without restraints) Performing minimization step: 2037. Total energy = 7535.8692 kcal/mol (7526.7898 without restraints) Performing minimization step: 2038. Total energy = 7533.2658 kcal/mol (7524.1886 without restraints) Performing minimization step: 2039. Total energy = 7530.6638 kcal/mol (7521.5884 without restraints) Performing minimization step: 2040. Total energy = 7528.0628 kcal/mol (7518.9892 without restraints) Performing minimization step: 2041. Total energy = 7525.4630 kcal/mol (7516.3915 without restraints) Performing minimization step: 2042. Total energy = 7522.8645 kcal/mol (7513.7950 without restraints) Performing minimization step: 2043. Total energy = 7520.2672 kcal/mol (7511.1996 without restraints) Performing minimization step: 2044. Total energy = 7517.6714 kcal/mol (7508.6058 without restraints) Performing minimization step: 2045. Total energy = 7515.0767 kcal/mol (7506.0129 without restraints) Performing minimization step: 2046. Total energy = 7512.4830 kcal/mol (7503.4213 without restraints) Performing minimization step: 2047. Total energy = 7509.8910 kcal/mol (7500.8312 without restraints) Performing minimization step: 2048. Total energy = 7507.2999 kcal/mol (7498.2421 without restraints) Performing minimization step: 2049. Total energy = 7504.7101 kcal/mol (7495.6542 without restraints) Performing minimization step: 2050. Total energy = 7502.1221 kcal/mol (7493.0683 without restraints) Performing minimization step: 2051. Total energy = 7499.5352 kcal/mol (7490.4833 without restraints) Performing minimization step: 2052. Total energy = 7496.9492 kcal/mol (7487.8993 without restraints) Performing minimization step: 2053. Total energy = 7494.3648 kcal/mol (7485.3168 without restraints) Performing minimization step: 2054. Total energy = 7491.7815 kcal/mol (7482.7354 without restraints) Performing minimization step: 2055. Total energy = 7489.1994 kcal/mol (7480.1554 without restraints) Performing minimization step: 2056. Total energy = 7486.6184 kcal/mol (7477.5763 without restraints) Performing minimization step: 2057. Total energy = 7484.0387 kcal/mol (7474.9983 without restraints) Performing minimization step: 2058. Total energy = 7481.4602 kcal/mol (7472.4219 without restraints) Performing minimization step: 2059. Total energy = 7478.8830 kcal/mol (7469.8466 without restraints) Performing minimization step: 2060. Total energy = 7476.3065 kcal/mol (7467.2721 without restraints) Performing minimization step: 2061. Total energy = 7473.7320 kcal/mol (7464.6995 without restraints) Performing minimization step: 2062. Total energy = 7471.1585 kcal/mol (7462.1280 without restraints) Performing minimization step: 2063. Total energy = 7468.5863 kcal/mol (7459.5577 without restraints) Performing minimization step: 2064. Total energy = 7466.0153 kcal/mol (7456.9886 without restraints) Performing minimization step: 2065. Total energy = 7463.4455 kcal/mol (7454.4208 without restraints) Performing minimization step: 2066. Total energy = 7460.8769 kcal/mol (7451.8542 without restraints) Performing minimization step: 2067. Total energy = 7458.3098 kcal/mol (7449.2890 without restraints) Performing minimization step: 2068. Total energy = 7455.7434 kcal/mol (7446.7246 without restraints) Performing minimization step: 2069. Total energy = 7453.1786 kcal/mol (7444.1617 without restraints) Performing minimization step: 2070. Total energy = 7450.6150 kcal/mol (7441.6000 without restraints) Performing minimization step: 2071. Total energy = 7448.0528 kcal/mol (7439.0397 without restraints) Performing minimization step: 2072. Total energy = 7445.4917 kcal/mol (7436.4805 without restraints) Performing minimization step: 2073. Total energy = 7442.9323 kcal/mol (7433.9232 without restraints) Performing minimization step: 2074. Total energy = 7440.3735 kcal/mol (7431.3663 without restraints) Performing minimization step: 2075. Total energy = 7437.8160 kcal/mol (7428.8107 without restraints) Performing minimization step: 2076. Total energy = 7435.2598 kcal/mol (7426.2563 without restraints) Performing minimization step: 2077. Total energy = 7432.7047 kcal/mol (7423.7032 without restraints) Performing minimization step: 2078. Total energy = 7430.1507 kcal/mol (7421.1512 without restraints) Performing minimization step: 2079. Total energy = 7427.5982 kcal/mol (7418.6005 without restraints) Performing minimization step: 2080. Total energy = 7425.0466 kcal/mol (7416.0510 without restraints) Performing minimization step: 2081. Total energy = 7422.4966 kcal/mol (7413.5028 without restraints) Performing minimization step: 2082. Total energy = 7419.9474 kcal/mol (7410.9556 without restraints) Performing minimization step: 2083. Total energy = 7417.3997 kcal/mol (7408.4098 without restraints) Performing minimization step: 2084. Total energy = 7414.8539 kcal/mol (7405.8659 without restraints) Performing minimization step: 2085. Total energy = 7412.3087 kcal/mol (7403.3226 without restraints) Performing minimization step: 2086. Total energy = 7409.7649 kcal/mol (7400.7807 without restraints) Performing minimization step: 2087. Total energy = 7407.2220 kcal/mol (7398.2397 without restraints) Performing minimization step: 2088. Total energy = 7404.6802 kcal/mol (7395.6999 without restraints) Performing minimization step: 2089. Total energy = 7402.1396 kcal/mol (7393.1610 without restraints) Performing minimization step: 2090. Total energy = 7399.6005 kcal/mol (7390.6240 without restraints) Performing minimization step: 2091. Total energy = 7397.0626 kcal/mol (7388.0881 without restraints) Performing minimization step: 2092. Total energy = 7394.5258 kcal/mol (7385.5532 without restraints) Performing minimization step: 2093. Total energy = 7391.9902 kcal/mol (7383.0195 without restraints) Performing minimization step: 2094. Total energy = 7389.4558 kcal/mol (7380.4869 without restraints) Performing minimization step: 2095. Total energy = 7386.9228 kcal/mol (7377.9559 without restraints) Performing minimization step: 2096. Total energy = 7384.3905 kcal/mol (7375.4255 without restraints) Performing minimization step: 2097. Total energy = 7381.8596 kcal/mol (7372.8965 without restraints) Performing minimization step: 2098. Total energy = 7379.3305 kcal/mol (7370.3694 without restraints) Performing minimization step: 2099. Total energy = 7376.8022 kcal/mol (7367.8429 without restraints) Performing minimization step: 2100. Total energy = 7374.2751 kcal/mol (7365.3177 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 7371.7491 kcal/mol (7362.7936 without restraints) Performing minimization step: 2102. Total energy = 7369.2241 kcal/mol (7360.2705 without restraints) Performing minimization step: 2103. Total energy = 7366.7003 kcal/mol (7357.7486 without restraints) Performing minimization step: 2104. Total energy = 7364.1777 kcal/mol (7355.2279 without restraints) Performing minimization step: 2105. Total energy = 7361.6564 kcal/mol (7352.7086 without restraints) Performing minimization step: 2106. Total energy = 7359.1367 kcal/mol (7350.1907 without restraints) Performing minimization step: 2107. Total energy = 7356.6178 kcal/mol (7347.6738 without restraints) Performing minimization step: 2108. Total energy = 7354.1002 kcal/mol (7345.1581 without restraints) Performing minimization step: 2109. Total energy = 7351.5836 kcal/mol (7342.6433 without restraints) Performing minimization step: 2110. Total energy = 7349.0683 kcal/mol (7340.1299 without restraints) Performing minimization step: 2111. Total energy = 7346.5542 kcal/mol (7337.6177 without restraints) Performing minimization step: 2112. Total energy = 7344.0414 kcal/mol (7335.1067 without restraints) Performing minimization step: 2113. Total energy = 7341.5297 kcal/mol (7332.5970 without restraints) Performing minimization step: 2114. Total energy = 7339.0190 kcal/mol (7330.0882 without restraints) Performing minimization step: 2115. Total energy = 7336.5098 kcal/mol (7327.5809 without restraints) Performing minimization step: 2116. Total energy = 7334.0015 kcal/mol (7325.0745 without restraints) Performing minimization step: 2117. Total energy = 7331.4945 kcal/mol (7322.5694 without restraints) Performing minimization step: 2118. Total energy = 7328.9891 kcal/mol (7320.0659 without restraints) Performing minimization step: 2119. Total energy = 7326.4850 kcal/mol (7317.5637 without restraints) Performing minimization step: 2120. Total energy = 7323.9818 kcal/mol (7315.0624 without restraints) Performing minimization step: 2121. Total energy = 7321.4798 kcal/mol (7312.5625 without restraints) Performing minimization step: 2122. Total energy = 7318.9792 kcal/mol (7310.0635 without restraints) Performing minimization step: 2123. Total energy = 7316.4794 kcal/mol (7307.5656 without restraints) Performing minimization step: 2124. Total energy = 7313.9809 kcal/mol (7305.0690 without restraints) Performing minimization step: 2125. Total energy = 7311.4840 kcal/mol (7302.5740 without restraints) Performing minimization step: 2126. Total energy = 7308.9878 kcal/mol (7300.0796 without restraints) Performing minimization step: 2127. Total energy = 7306.4927 kcal/mol (7297.5864 without restraints) Performing minimization step: 2128. Total energy = 7303.9990 kcal/mol (7295.0947 without restraints) Performing minimization step: 2129. Total energy = 7301.5063 kcal/mol (7292.6038 without restraints) Performing minimization step: 2130. Total energy = 7299.0150 kcal/mol (7290.1144 without restraints) Performing minimization step: 2131. Total energy = 7296.5246 kcal/mol (7287.6259 without restraints) Performing minimization step: 2132. Total energy = 7294.0355 kcal/mol (7285.1387 without restraints) Performing minimization step: 2133. Total energy = 7291.5475 kcal/mol (7282.6525 without restraints) Performing minimization step: 2134. Total energy = 7289.0607 kcal/mol (7280.1676 without restraints) Performing minimization step: 2135. Total energy = 7286.5751 kcal/mol (7277.6839 without restraints) Performing minimization step: 2136. Total energy = 7284.0907 kcal/mol (7275.2013 without restraints) Performing minimization step: 2137. Total energy = 7281.6076 kcal/mol (7272.7202 without restraints) Performing minimization step: 2138. Total energy = 7279.1251 kcal/mol (7270.2394 without restraints) Performing minimization step: 2139. Total energy = 7276.6438 kcal/mol (7267.7601 without restraints) Performing minimization step: 2140. Total energy = 7274.1645 kcal/mol (7265.2826 without restraints) Performing minimization step: 2141. Total energy = 7271.6864 kcal/mol (7262.8065 without restraints) Performing minimization step: 2142. Total energy = 7269.2093 kcal/mol (7260.3314 without restraints) Performing minimization step: 2143. Total energy = 7266.7333 kcal/mol (7257.8570 without restraints) Performing minimization step: 2144. Total energy = 7264.2589 kcal/mol (7255.3844 without restraints) Performing minimization step: 2145. Total energy = 7261.7849 kcal/mol (7252.9124 without restraints) Performing minimization step: 2146. Total energy = 7259.3119 kcal/mol (7250.4413 without restraints) Performing minimization step: 2147. Total energy = 7256.8402 kcal/mol (7247.9714 without restraints) Performing minimization step: 2148. Total energy = 7254.3698 kcal/mol (7245.5029 without restraints) Performing minimization step: 2149. Total energy = 7251.9006 kcal/mol (7243.0356 without restraints) Performing minimization step: 2150. Total energy = 7249.4326 kcal/mol (7240.5694 without restraints) Performing minimization step: 2151. Total energy = 7246.9658 kcal/mol (7238.1046 without restraints) Performing minimization step: 2152. Total energy = 7244.5004 kcal/mol (7235.6411 without restraints) Performing minimization step: 2153. Total energy = 7242.0362 kcal/mol (7233.1786 without restraints) Performing minimization step: 2154. Total energy = 7239.5725 kcal/mol (7230.7168 without restraints) Performing minimization step: 2155. Total energy = 7237.1103 kcal/mol (7228.2565 without restraints) Performing minimization step: 2156. Total energy = 7234.6499 kcal/mol (7225.7979 without restraints) Performing minimization step: 2157. Total energy = 7232.1900 kcal/mol (7223.3399 without restraints) Performing minimization step: 2158. Total energy = 7229.7311 kcal/mol (7220.8828 without restraints) Performing minimization step: 2159. Total energy = 7227.2735 kcal/mol (7218.4270 without restraints) Performing minimization step: 2160. Total energy = 7224.8173 kcal/mol (7215.9728 without restraints) Performing minimization step: 2161. Total energy = 7222.3623 kcal/mol (7213.5195 without restraints) Performing minimization step: 2162. Total energy = 7219.9084 kcal/mol (7211.0676 without restraints) Performing minimization step: 2163. Total energy = 7217.4561 kcal/mol (7208.6171 without restraints) Performing minimization step: 2164. Total energy = 7215.0042 kcal/mol (7206.1670 without restraints) Performing minimization step: 2165. Total energy = 7212.5535 kcal/mol (7203.7180 without restraints) Performing minimization step: 2166. Total energy = 7210.1039 kcal/mol (7201.2705 without restraints) Performing minimization step: 2167. Total energy = 7207.6563 kcal/mol (7198.8247 without restraints) Performing minimization step: 2168. Total energy = 7205.2094 kcal/mol (7196.3796 without restraints) Performing minimization step: 2169. Total energy = 7202.7635 kcal/mol (7193.9356 without restraints) Performing minimization step: 2170. Total energy = 7200.3193 kcal/mol (7191.4932 without restraints) Performing minimization step: 2171. Total energy = 7197.8758 kcal/mol (7189.0516 without restraints) Performing minimization step: 2172. Total energy = 7195.4337 kcal/mol (7186.6113 without restraints) Performing minimization step: 2173. Total energy = 7192.9925 kcal/mol (7184.1720 without restraints) Performing minimization step: 2174. Total energy = 7190.5525 kcal/mol (7181.7341 without restraints) Performing minimization step: 2175. Total energy = 7188.1137 kcal/mol (7179.2969 without restraints) Performing minimization step: 2176. Total energy = 7185.6759 kcal/mol (7176.8608 without restraints) Performing minimization step: 2177. Total energy = 7183.2392 kcal/mol (7174.4262 without restraints) Performing minimization step: 2178. Total energy = 7180.8042 kcal/mol (7171.9929 without restraints) Performing minimization step: 2179. Total energy = 7178.3703 kcal/mol (7169.5608 without restraints) Performing minimization step: 2180. Total energy = 7175.9373 kcal/mol (7167.1297 without restraints) Performing minimization step: 2181. Total energy = 7173.5052 kcal/mol (7164.6995 without restraints) Performing minimization step: 2182. Total energy = 7171.0747 kcal/mol (7162.2707 without restraints) Performing minimization step: 2183. Total energy = 7168.6452 kcal/mol (7159.8432 without restraints) Performing minimization step: 2184. Total energy = 7166.2171 kcal/mol (7157.4169 without restraints) Performing minimization step: 2185. Total energy = 7163.7899 kcal/mol (7154.9915 without restraints) Performing minimization step: 2186. Total energy = 7161.3639 kcal/mol (7152.5673 without restraints) Performing minimization step: 2187. Total energy = 7158.9393 kcal/mol (7150.1445 without restraints) Performing minimization step: 2188. Total energy = 7156.5151 kcal/mol (7147.7220 without restraints) Performing minimization step: 2189. Total energy = 7154.0929 kcal/mol (7145.3021 without restraints) Performing minimization step: 2190. Total energy = 7151.6719 kcal/mol (7142.8826 without restraints) Performing minimization step: 2191. Total energy = 7149.2518 kcal/mol (7140.4644 without restraints) Performing minimization step: 2192. Total energy = 7146.8327 kcal/mol (7138.0471 without restraints) Performing minimization step: 2193. Total energy = 7144.4148 kcal/mol (7135.6310 without restraints) Performing minimization step: 2194. Total energy = 7141.9980 kcal/mol (7133.2160 without restraints) Performing minimization step: 2195. Total energy = 7139.5824 kcal/mol (7130.8022 without restraints) Performing minimization step: 2196. Total energy = 7137.1678 kcal/mol (7128.3895 without restraints) Performing minimization step: 2197. Total energy = 7134.7547 kcal/mol (7125.9783 without restraints) Performing minimization step: 2198. Total energy = 7132.3426 kcal/mol (7123.5680 without restraints) Performing minimization step: 2199. Total energy = 7129.9317 kcal/mol (7121.1590 without restraints) Performing minimization step: 2200. Total energy = 7127.5222 kcal/mol (7118.7511 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 7125.1137 kcal/mol (7116.3446 without restraints) Performing minimization step: 2202. Total energy = 7122.7063 kcal/mol (7113.9389 without restraints) Performing minimization step: 2203. Total energy = 7120.2999 kcal/mol (7111.5343 without restraints) Performing minimization step: 2204. Total energy = 7117.8947 kcal/mol (7109.1310 without restraints) Performing minimization step: 2205. Total energy = 7115.4912 kcal/mol (7106.7293 without restraints) Performing minimization step: 2206. Total energy = 7113.0884 kcal/mol (7104.3283 without restraints) Performing minimization step: 2207. Total energy = 7110.6864 kcal/mol (7101.9282 without restraints) Performing minimization step: 2208. Total energy = 7108.2860 kcal/mol (7099.5295 without restraints) Performing minimization step: 2209. Total energy = 7105.8867 kcal/mol (7097.1322 without restraints) Performing minimization step: 2210. Total energy = 7103.4886 kcal/mol (7094.7358 without restraints) Performing minimization step: 2211. Total energy = 7101.0918 kcal/mol (7092.3408 without restraints) Performing minimization step: 2212. Total energy = 7098.6965 kcal/mol (7089.9473 without restraints) Performing minimization step: 2213. Total energy = 7096.3016 kcal/mol (7087.5542 without restraints) Performing minimization step: 2214. Total energy = 7093.9082 kcal/mol (7085.1627 without restraints) Performing minimization step: 2215. Total energy = 7091.5162 kcal/mol (7082.7725 without restraints) Performing minimization step: 2216. Total energy = 7089.1253 kcal/mol (7080.3834 without restraints) Performing minimization step: 2217. Total energy = 7086.7352 kcal/mol (7077.9951 without restraints) Performing minimization step: 2218. Total energy = 7084.3463 kcal/mol (7075.6080 without restraints) Performing minimization step: 2219. Total energy = 7081.9585 kcal/mol (7073.2220 without restraints) Performing minimization step: 2220. Total energy = 7079.5721 kcal/mol (7070.8375 without restraints) Performing minimization step: 2221. Total energy = 7077.1869 kcal/mol (7068.4540 without restraints) Performing minimization step: 2222. Total energy = 7074.8026 kcal/mol (7066.0716 without restraints) Performing minimization step: 2223. Total energy = 7072.4195 kcal/mol (7063.6903 without restraints) Performing minimization step: 2224. Total energy = 7070.0376 kcal/mol (7061.3102 without restraints) Performing minimization step: 2225. Total energy = 7067.6567 kcal/mol (7058.9310 without restraints) Performing minimization step: 2226. Total energy = 7065.2770 kcal/mol (7056.5531 without restraints) Performing minimization step: 2227. Total energy = 7062.8988 kcal/mol (7054.1769 without restraints) Performing minimization step: 2228. Total energy = 7060.5218 kcal/mol (7051.8016 without restraints) Performing minimization step: 2229. Total energy = 7058.1457 kcal/mol (7049.4274 without restraints) Performing minimization step: 2230. Total energy = 7055.7709 kcal/mol (7047.0545 without restraints) Performing minimization step: 2231. Total energy = 7053.3973 kcal/mol (7044.6825 without restraints) Performing minimization step: 2232. Total energy = 7051.0245 kcal/mol (7042.3115 without restraints) Performing minimization step: 2233. Total energy = 7048.6531 kcal/mol (7039.9420 without restraints) Performing minimization step: 2234. Total energy = 7046.2833 kcal/mol (7037.5741 without restraints) Performing minimization step: 2235. Total energy = 7043.9143 kcal/mol (7035.2067 without restraints) Performing minimization step: 2236. Total energy = 7041.5465 kcal/mol (7032.8407 without restraints) Performing minimization step: 2237. Total energy = 7039.1796 kcal/mol (7030.4756 without restraints) Performing minimization step: 2238. Total energy = 7036.8139 kcal/mol (7028.1117 without restraints) Performing minimization step: 2239. Total energy = 7034.4496 kcal/mol (7025.7492 without restraints) Performing minimization step: 2240. Total energy = 7032.0858 kcal/mol (7023.3872 without restraints) Performing minimization step: 2241. Total energy = 7029.7236 kcal/mol (7021.0268 without restraints) Performing minimization step: 2242. Total energy = 7027.3626 kcal/mol (7018.6677 without restraints) Performing minimization step: 2243. Total energy = 7025.0027 kcal/mol (7016.3095 without restraints) Performing minimization step: 2244. Total energy = 7022.6440 kcal/mol (7013.9528 without restraints) Performing minimization step: 2245. Total energy = 7020.2863 kcal/mol (7011.5968 without restraints) Performing minimization step: 2246. Total energy = 7017.9299 kcal/mol (7009.2421 without restraints) Performing minimization step: 2247. Total energy = 7015.5747 kcal/mol (7006.8887 without restraints) Performing minimization step: 2248. Total energy = 7013.2203 kcal/mol (7004.5361 without restraints) Performing minimization step: 2249. Total energy = 7010.8673 kcal/mol (7002.1848 without restraints) Performing minimization step: 2250. Total energy = 7008.5153 kcal/mol (6999.8346 without restraints) Performing minimization step: 2251. Total energy = 7006.1650 kcal/mol (6997.4861 without restraints) Performing minimization step: 2252. Total energy = 7003.8150 kcal/mol (6995.1379 without restraints) Performing minimization step: 2253. Total energy = 7001.4667 kcal/mol (6992.7914 without restraints) Performing minimization step: 2254. Total energy = 6999.1204 kcal/mol (6990.4468 without restraints) Performing minimization step: 2255. Total energy = 6996.7746 kcal/mol (6988.1028 without restraints) Performing minimization step: 2256. Total energy = 6994.4299 kcal/mol (6985.7600 without restraints) Performing minimization step: 2257. Total energy = 6992.0862 kcal/mol (6983.4181 without restraints) Performing minimization step: 2258. Total energy = 6989.7439 kcal/mol (6981.0775 without restraints) Performing minimization step: 2259. Total energy = 6987.4028 kcal/mol (6978.7383 without restraints) Performing minimization step: 2260. Total energy = 6985.0627 kcal/mol (6976.3999 without restraints) Performing minimization step: 2261. Total energy = 6982.7234 kcal/mol (6974.0624 without restraints) Performing minimization step: 2262. Total energy = 6980.3855 kcal/mol (6971.7263 without restraints) Performing minimization step: 2263. Total energy = 6978.0488 kcal/mol (6969.3913 without restraints) Performing minimization step: 2264. Total energy = 6975.7137 kcal/mol (6967.0580 without restraints) Performing minimization step: 2265. Total energy = 6973.3795 kcal/mol (6964.7256 without restraints) Performing minimization step: 2266. Total energy = 6971.0463 kcal/mol (6962.3942 without restraints) Performing minimization step: 2267. Total energy = 6968.7151 kcal/mol (6960.0648 without restraints) Performing minimization step: 2268. Total energy = 6966.3843 kcal/mol (6957.7357 without restraints) Performing minimization step: 2269. Total energy = 6964.0545 kcal/mol (6955.4076 without restraints) Performing minimization step: 2270. Total energy = 6961.7259 kcal/mol (6953.0809 without restraints) Performing minimization step: 2271. Total energy = 6959.3985 kcal/mol (6950.7552 without restraints) Performing minimization step: 2272. Total energy = 6957.0719 kcal/mol (6948.4304 without restraints) Performing minimization step: 2273. Total energy = 6954.7468 kcal/mol (6946.1071 without restraints) Performing minimization step: 2274. Total energy = 6952.4230 kcal/mol (6943.7851 without restraints) Performing minimization step: 2275. Total energy = 6950.1003 kcal/mol (6941.4642 without restraints) Performing minimization step: 2276. Total energy = 6947.7787 kcal/mol (6939.1443 without restraints) Performing minimization step: 2277. Total energy = 6945.4581 kcal/mol (6936.8255 without restraints) Performing minimization step: 2278. Total energy = 6943.1389 kcal/mol (6934.5081 without restraints) Performing minimization step: 2279. Total energy = 6940.8209 kcal/mol (6932.1918 without restraints) Performing minimization step: 2280. Total energy = 6938.5043 kcal/mol (6929.8773 without restraints) Performing minimization step: 2281. Total energy = 6936.1888 kcal/mol (6927.5633 without restraints) Performing minimization step: 2282. Total energy = 6933.8739 kcal/mol (6925.2502 without restraints) Performing minimization step: 2283. Total energy = 6931.5604 kcal/mol (6922.9387 without restraints) Performing minimization step: 2284. Total energy = 6929.2486 kcal/mol (6920.6285 without restraints) Performing minimization step: 2285. Total energy = 6926.9378 kcal/mol (6918.3194 without restraints) Performing minimization step: 2286. Total energy = 6924.6282 kcal/mol (6916.0116 without restraints) Performing minimization step: 2287. Total energy = 6922.3196 kcal/mol (6913.7047 without restraints) Performing minimization step: 2288. Total energy = 6920.0122 kcal/mol (6911.3990 without restraints) Performing minimization step: 2289. Total energy = 6917.7059 kcal/mol (6909.0945 without restraints) Performing minimization step: 2290. Total energy = 6915.4005 kcal/mol (6906.7909 without restraints) Performing minimization step: 2291. Total energy = 6913.0960 kcal/mol (6904.4882 without restraints) Performing minimization step: 2292. Total energy = 6910.7932 kcal/mol (6902.1871 without restraints) Performing minimization step: 2293. Total energy = 6908.4916 kcal/mol (6899.8873 without restraints) Performing minimization step: 2294. Total energy = 6906.1912 kcal/mol (6897.5888 without restraints) Performing minimization step: 2295. Total energy = 6903.8920 kcal/mol (6895.2912 without restraints) Performing minimization step: 2296. Total energy = 6901.5938 kcal/mol (6892.9949 without restraints) Performing minimization step: 2297. Total energy = 6899.2972 kcal/mol (6890.6999 without restraints) Performing minimization step: 2298. Total energy = 6897.0015 kcal/mol (6888.4060 without restraints) Performing minimization step: 2299. Total energy = 6894.7069 kcal/mol (6886.1132 without restraints) Performing minimization step: 2300. Total energy = 6892.4134 kcal/mol (6883.8214 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 6890.1213 kcal/mol (6881.5311 without restraints) Performing minimization step: 2302. Total energy = 6887.8304 kcal/mol (6879.2419 without restraints) Performing minimization step: 2303. Total energy = 6885.5405 kcal/mol (6876.9538 without restraints) Performing minimization step: 2304. Total energy = 6883.2519 kcal/mol (6874.6670 without restraints) Performing minimization step: 2305. Total energy = 6880.9643 kcal/mol (6872.3811 without restraints) Performing minimization step: 2306. Total energy = 6878.6781 kcal/mol (6870.0967 without restraints) Performing minimization step: 2307. Total energy = 6876.3929 kcal/mol (6867.8132 without restraints) Performing minimization step: 2308. Total energy = 6874.1089 kcal/mol (6865.5310 without restraints) Performing minimization step: 2309. Total energy = 6871.8260 kcal/mol (6863.2499 without restraints) Performing minimization step: 2310. Total energy = 6869.5443 kcal/mol (6860.9699 without restraints) Performing minimization step: 2311. Total energy = 6867.2636 kcal/mol (6858.6909 without restraints) Performing minimization step: 2312. Total energy = 6864.9839 kcal/mol (6856.4129 without restraints) Performing minimization step: 2313. Total energy = 6862.7053 kcal/mol (6854.1361 without restraints) Performing minimization step: 2314. Total energy = 6860.4282 kcal/mol (6851.8608 without restraints) Performing minimization step: 2315. Total energy = 6858.1525 kcal/mol (6849.5868 without restraints) Performing minimization step: 2316. Total energy = 6855.8783 kcal/mol (6847.3144 without restraints) Performing minimization step: 2317. Total energy = 6853.6049 kcal/mol (6845.0427 without restraints) Performing minimization step: 2318. Total energy = 6851.3328 kcal/mol (6842.7725 without restraints) Performing minimization step: 2319. Total energy = 6849.0619 kcal/mol (6840.5034 without restraints) Performing minimization step: 2320. Total energy = 6846.7928 kcal/mol (6838.2361 without restraints) Performing minimization step: 2321. Total energy = 6844.5247 kcal/mol (6835.9696 without restraints) Performing minimization step: 2322. Total energy = 6842.2572 kcal/mol (6833.7037 without restraints) Performing minimization step: 2323. Total energy = 6839.9908 kcal/mol (6831.4391 without restraints) Performing minimization step: 2324. Total energy = 6837.7254 kcal/mol (6829.1755 without restraints) Performing minimization step: 2325. Total energy = 6835.4614 kcal/mol (6826.9131 without restraints) Performing minimization step: 2326. Total energy = 6833.1987 kcal/mol (6824.6523 without restraints) Performing minimization step: 2327. Total energy = 6830.9371 kcal/mol (6822.3924 without restraints) Performing minimization step: 2328. Total energy = 6828.6765 kcal/mol (6820.1336 without restraints) Performing minimization step: 2329. Total energy = 6826.4173 kcal/mol (6817.8761 without restraints) Performing minimization step: 2330. Total energy = 6824.1593 kcal/mol (6815.6198 without restraints) Performing minimization step: 2331. Total energy = 6821.9024 kcal/mol (6813.3647 without restraints) Performing minimization step: 2332. Total energy = 6819.6467 kcal/mol (6811.1107 without restraints) Performing minimization step: 2333. Total energy = 6817.3920 kcal/mol (6808.8577 without restraints) Performing minimization step: 2334. Total energy = 6815.1386 kcal/mol (6806.6061 without restraints) Performing minimization step: 2335. Total energy = 6812.8865 kcal/mol (6804.3557 without restraints) Performing minimization step: 2336. Total energy = 6810.6358 kcal/mol (6802.1067 without restraints) Performing minimization step: 2337. Total energy = 6808.3864 kcal/mol (6799.8592 without restraints) Performing minimization step: 2338. Total energy = 6806.1381 kcal/mol (6797.6126 without restraints) Performing minimization step: 2339. Total energy = 6803.8910 kcal/mol (6795.3672 without restraints) Performing minimization step: 2340. Total energy = 6801.6449 kcal/mol (6793.1228 without restraints) Performing minimization step: 2341. Total energy = 6799.3998 kcal/mol (6790.8795 without restraints) Performing minimization step: 2342. Total energy = 6797.1561 kcal/mol (6788.6375 without restraints) Performing minimization step: 2343. Total energy = 6794.9139 kcal/mol (6786.3973 without restraints) Performing minimization step: 2344. Total energy = 6792.6729 kcal/mol (6784.1576 without restraints) Performing minimization step: 2345. Total energy = 6790.4325 kcal/mol (6781.9191 without restraints) Performing minimization step: 2346. Total energy = 6788.1935 kcal/mol (6779.6819 without restraints) Performing minimization step: 2347. Total energy = 6785.9559 kcal/mol (6777.4460 without restraints) Performing minimization step: 2348. Total energy = 6783.7192 kcal/mol (6775.2110 without restraints) Performing minimization step: 2349. Total energy = 6781.4838 kcal/mol (6772.9774 without restraints) Performing minimization step: 2350. Total energy = 6779.2495 kcal/mol (6770.7449 without restraints) Performing minimization step: 2351. Total energy = 6777.0164 kcal/mol (6768.5134 without restraints) Performing minimization step: 2352. Total energy = 6774.7846 kcal/mol (6766.2833 without restraints) Performing minimization step: 2353. Total energy = 6772.5540 kcal/mol (6764.0545 without restraints) Performing minimization step: 2354. Total energy = 6770.3247 kcal/mol (6761.8269 without restraints) Performing minimization step: 2355. Total energy = 6768.0963 kcal/mol (6759.6002 without restraints) Performing minimization step: 2356. Total energy = 6765.8698 kcal/mol (6757.3754 without restraints) Performing minimization step: 2357. Total energy = 6763.6437 kcal/mol (6755.1511 without restraints) Performing minimization step: 2358. Total energy = 6761.4193 kcal/mol (6752.9284 without restraints) Performing minimization step: 2359. Total energy = 6759.1960 kcal/mol (6750.7067 without restraints) Performing minimization step: 2360. Total energy = 6756.9740 kcal/mol (6748.4865 without restraints) Performing minimization step: 2361. Total energy = 6754.7530 kcal/mol (6746.2673 without restraints) Performing minimization step: 2362. Total energy = 6752.5335 kcal/mol (6744.0496 without restraints) Performing minimization step: 2363. Total energy = 6750.3149 kcal/mol (6741.8326 without restraints) Performing minimization step: 2364. Total energy = 6748.0976 kcal/mol (6739.6171 without restraints) Performing minimization step: 2365. Total energy = 6745.8815 kcal/mol (6737.4027 without restraints) Performing minimization step: 2366. Total energy = 6743.6665 kcal/mol (6735.1894 without restraints) Performing minimization step: 2367. Total energy = 6741.4528 kcal/mol (6732.9776 without restraints) Performing minimization step: 2368. Total energy = 6739.2407 kcal/mol (6730.7672 without restraints) Performing minimization step: 2369. Total energy = 6737.0292 kcal/mol (6728.5573 without restraints) Performing minimization step: 2370. Total energy = 6734.8184 kcal/mol (6726.3482 without restraints) Performing minimization step: 2371. Total energy = 6732.6095 kcal/mol (6724.1410 without restraints) Performing minimization step: 2372. Total energy = 6730.4018 kcal/mol (6721.9351 without restraints) Performing minimization step: 2373. Total energy = 6728.1953 kcal/mol (6719.7303 without restraints) Performing minimization step: 2374. Total energy = 6725.9904 kcal/mol (6717.5272 without restraints) Performing minimization step: 2375. Total energy = 6723.7864 kcal/mol (6715.3249 without restraints) Performing minimization step: 2376. Total energy = 6721.5837 kcal/mol (6713.1237 without restraints) Performing minimization step: 2377. Total energy = 6719.3819 kcal/mol (6710.9238 without restraints) Performing minimization step: 2378. Total energy = 6717.1815 kcal/mol (6708.7251 without restraints) Performing minimization step: 2379. Total energy = 6714.9823 kcal/mol (6706.5277 without restraints) Performing minimization step: 2380. Total energy = 6712.7842 kcal/mol (6704.3312 without restraints) Performing minimization step: 2381. Total energy = 6710.5871 kcal/mol (6702.1359 without restraints) Performing minimization step: 2382. Total energy = 6708.3916 kcal/mol (6699.9421 without restraints) Performing minimization step: 2383. Total energy = 6706.1973 kcal/mol (6697.7495 without restraints) Performing minimization step: 2384. Total energy = 6704.0042 kcal/mol (6695.5581 without restraints) Performing minimization step: 2385. Total energy = 6701.8126 kcal/mol (6693.3682 without restraints) Performing minimization step: 2386. Total energy = 6699.6220 kcal/mol (6691.1794 without restraints) Performing minimization step: 2387. Total energy = 6697.4325 kcal/mol (6688.9915 without restraints) Performing minimization step: 2388. Total energy = 6695.2442 kcal/mol (6686.8050 without restraints) Performing minimization step: 2389. Total energy = 6693.0572 kcal/mol (6684.6197 without restraints) Performing minimization step: 2390. Total energy = 6690.8720 kcal/mol (6682.4363 without restraints) Performing minimization step: 2391. Total energy = 6688.6878 kcal/mol (6680.2538 without restraints) Performing minimization step: 2392. Total energy = 6686.5044 kcal/mol (6678.0719 without restraints) Performing minimization step: 2393. Total energy = 6684.3223 kcal/mol (6675.8916 without restraints) Performing minimization step: 2394. Total energy = 6682.1415 kcal/mol (6673.7126 without restraints) Performing minimization step: 2395. Total energy = 6679.9619 kcal/mol (6671.5347 without restraints) Performing minimization step: 2396. Total energy = 6677.7842 kcal/mol (6669.3587 without restraints) Performing minimization step: 2397. Total energy = 6675.6071 kcal/mol (6667.1833 without restraints) Performing minimization step: 2398. Total energy = 6673.4310 kcal/mol (6665.0090 without restraints) Performing minimization step: 2399. Total energy = 6671.2564 kcal/mol (6662.8360 without restraints) Performing minimization step: 2400. Total energy = 6669.0830 kcal/mol (6660.6643 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 6666.9107 kcal/mol (6658.4936 without restraints) Performing minimization step: 2402. Total energy = 6664.7395 kcal/mol (6656.3244 without restraints) Performing minimization step: 2403. Total energy = 6662.5705 kcal/mol (6654.1570 without restraints) Performing minimization step: 2404. Total energy = 6660.4018 kcal/mol (6651.9900 without restraints) Performing minimization step: 2405. Total energy = 6658.2345 kcal/mol (6649.8243 without restraints) Performing minimization step: 2406. Total energy = 6656.0684 kcal/mol (6647.6600 without restraints) Performing minimization step: 2407. Total energy = 6653.9040 kcal/mol (6645.4973 without restraints) Performing minimization step: 2408. Total energy = 6651.7404 kcal/mol (6643.3354 without restraints) Performing minimization step: 2409. Total energy = 6649.5780 kcal/mol (6641.1747 without restraints) Performing minimization step: 2410. Total energy = 6647.4170 kcal/mol (6639.0154 without restraints) Performing minimization step: 2411. Total energy = 6645.2575 kcal/mol (6636.8576 without restraints) Performing minimization step: 2412. Total energy = 6643.0992 kcal/mol (6634.7010 without restraints) Performing minimization step: 2413. Total energy = 6640.9421 kcal/mol (6632.5457 without restraints) Performing minimization step: 2414. Total energy = 6638.7863 kcal/mol (6630.3916 without restraints) Performing minimization step: 2415. Total energy = 6636.6314 kcal/mol (6628.2382 without restraints) Performing minimization step: 2416. Total energy = 6634.4782 kcal/mol (6626.0871 without restraints) Performing minimization step: 2417. Total energy = 6632.3263 kcal/mol (6623.9367 without restraints) Performing minimization step: 2418. Total energy = 6630.1752 kcal/mol (6621.7873 without restraints) Performing minimization step: 2419. Total energy = 6628.0254 kcal/mol (6619.6392 without restraints) Performing minimization step: 2420. Total energy = 6625.8769 kcal/mol (6617.4924 without restraints) Performing minimization step: 2421. Total energy = 6623.7299 kcal/mol (6615.3473 without restraints) Performing minimization step: 2422. Total energy = 6621.5843 kcal/mol (6613.2032 without restraints) Performing minimization step: 2423. Total energy = 6619.4392 kcal/mol (6611.0599 without restraints) Performing minimization step: 2424. Total energy = 6617.2955 kcal/mol (6608.9178 without restraints) Performing minimization step: 2425. Total energy = 6615.1534 kcal/mol (6606.7775 without restraints) Performing minimization step: 2426. Total energy = 6613.0125 kcal/mol (6604.6383 without restraints) Performing minimization step: 2427. Total energy = 6610.8730 kcal/mol (6602.5005 without restraints) Performing minimization step: 2428. Total energy = 6608.7347 kcal/mol (6600.3639 without restraints) Performing minimization step: 2429. Total energy = 6606.5982 kcal/mol (6598.2291 without restraints) Performing minimization step: 2430. Total energy = 6604.4625 kcal/mol (6596.0952 without restraints) Performing minimization step: 2431. Total energy = 6602.3285 kcal/mol (6593.9628 without restraints) Performing minimization step: 2432. Total energy = 6600.1949 kcal/mol (6591.8307 without restraints) Performing minimization step: 2433. Total energy = 6598.0629 kcal/mol (6589.7006 without restraints) Performing minimization step: 2434. Total energy = 6595.9322 kcal/mol (6587.5717 without restraints) Performing minimization step: 2435. Total energy = 6593.8028 kcal/mol (6585.4438 without restraints) Performing minimization step: 2436. Total energy = 6591.6745 kcal/mol (6583.3173 without restraints) Performing minimization step: 2437. Total energy = 6589.5473 kcal/mol (6581.1917 without restraints) Performing minimization step: 2438. Total energy = 6587.4213 kcal/mol (6579.0675 without restraints) Performing minimization step: 2439. Total energy = 6585.2970 kcal/mol (6576.9448 without restraints) Performing minimization step: 2440. Total energy = 6583.1736 kcal/mol (6574.8232 without restraints) Performing minimization step: 2441. Total energy = 6581.0515 kcal/mol (6572.7027 without restraints) Performing minimization step: 2442. Total energy = 6578.9307 kcal/mol (6570.5836 without restraints) Performing minimization step: 2443. Total energy = 6576.8110 kcal/mol (6568.4656 without restraints) Performing minimization step: 2444. Total energy = 6574.6926 kcal/mol (6566.3488 without restraints) Performing minimization step: 2445. Total energy = 6572.5761 kcal/mol (6564.2345 without restraints) Performing minimization step: 2446. Total energy = 6570.4610 kcal/mol (6562.1207 without restraints) Performing minimization step: 2447. Total energy = 6568.3466 kcal/mol (6560.0080 without restraints) Performing minimization step: 2448. Total energy = 6566.2335 kcal/mol (6557.8966 without restraints) Performing minimization step: 2449. Total energy = 6564.1217 kcal/mol (6555.7865 without restraints) Performing minimization step: 2450. Total energy = 6562.0116 kcal/mol (6553.6781 without restraints) Performing minimization step: 2451. Total energy = 6559.9025 kcal/mol (6551.5707 without restraints) Performing minimization step: 2452. Total energy = 6557.7942 kcal/mol (6549.4641 without restraints) Performing minimization step: 2453. Total energy = 6555.6876 kcal/mol (6547.3593 without restraints) Performing minimization step: 2454. Total energy = 6553.5823 kcal/mol (6545.2556 without restraints) Performing minimization step: 2455. Total energy = 6551.4782 kcal/mol (6543.1531 without restraints) Performing minimization step: 2456. Total energy = 6549.3753 kcal/mol (6541.0519 without restraints) Performing minimization step: 2457. Total energy = 6547.2741 kcal/mol (6538.9524 without restraints) Performing minimization step: 2458. Total energy = 6545.1739 kcal/mol (6536.8541 without restraints) Performing minimization step: 2459. Total energy = 6543.0752 kcal/mol (6534.7568 without restraints) Performing minimization step: 2460. Total energy = 6540.9776 kcal/mol (6532.6613 without restraints) Performing minimization step: 2461. Total energy = 6538.8814 kcal/mol (6530.5665 without restraints) Performing minimization step: 2462. Total energy = 6536.7863 kcal/mol (6528.4731 without restraints) Performing minimization step: 2463. Total energy = 6534.6926 kcal/mol (6526.3811 without restraints) Performing minimization step: 2464. Total energy = 6532.6001 kcal/mol (6524.2903 without restraints) Performing minimization step: 2465. Total energy = 6530.5094 kcal/mol (6522.2013 without restraints) Performing minimization step: 2466. Total energy = 6528.4195 kcal/mol (6520.1130 without restraints) Performing minimization step: 2467. Total energy = 6526.3308 kcal/mol (6518.0261 without restraints) Performing minimization step: 2468. Total energy = 6524.2435 kcal/mol (6515.9404 without restraints) Performing minimization step: 2469. Total energy = 6522.1576 kcal/mol (6513.8563 without restraints) Performing minimization step: 2470. Total energy = 6520.0729 kcal/mol (6511.7732 without restraints) Performing minimization step: 2471. Total energy = 6517.9891 kcal/mol (6509.6910 without restraints) Performing minimization step: 2472. Total energy = 6515.9072 kcal/mol (6507.6110 without restraints) Performing minimization step: 2473. Total energy = 6513.8263 kcal/mol (6505.5317 without restraints) Performing minimization step: 2474. Total energy = 6511.7465 kcal/mol (6503.4535 without restraints) Performing minimization step: 2475. Total energy = 6509.6681 kcal/mol (6501.3769 without restraints) Performing minimization step: 2476. Total energy = 6507.5913 kcal/mol (6499.3020 without restraints) Performing minimization step: 2477. Total energy = 6505.5161 kcal/mol (6497.2282 without restraints) Performing minimization step: 2478. Total energy = 6503.4417 kcal/mol (6495.1556 without restraints) Performing minimization step: 2479. Total energy = 6501.3687 kcal/mol (6493.0843 without restraints) Performing minimization step: 2480. Total energy = 6499.2970 kcal/mol (6491.0142 without restraints) Performing minimization step: 2481. Total energy = 6497.2266 kcal/mol (6488.9456 without restraints) Performing minimization step: 2482. Total energy = 6495.1574 kcal/mol (6486.8780 without restraints) Performing minimization step: 2483. Total energy = 6493.0898 kcal/mol (6484.8120 without restraints) Performing minimization step: 2484. Total energy = 6491.0231 kcal/mol (6482.7470 without restraints) Performing minimization step: 2485. Total energy = 6488.9579 kcal/mol (6480.6835 without restraints) Performing minimization step: 2486. Total energy = 6486.8941 kcal/mol (6478.6215 without restraints) Performing minimization step: 2487. Total energy = 6484.8316 kcal/mol (6476.5606 without restraints) Performing minimization step: 2488. Total energy = 6482.7701 kcal/mol (6474.5008 without restraints) Performing minimization step: 2489. Total energy = 6480.7101 kcal/mol (6472.4424 without restraints) Performing minimization step: 2490. Total energy = 6478.6515 kcal/mol (6470.3856 without restraints) Performing minimization step: 2491. Total energy = 6476.5947 kcal/mol (6468.3305 without restraints) Performing minimization step: 2492. Total energy = 6474.5388 kcal/mol (6466.2762 without restraints) Performing minimization step: 2493. Total energy = 6472.4842 kcal/mol (6464.2234 without restraints) Performing minimization step: 2494. Total energy = 6470.4310 kcal/mol (6462.1718 without restraints) Performing minimization step: 2495. Total energy = 6468.3793 kcal/mol (6460.1219 without restraints) Performing minimization step: 2496. Total energy = 6466.3288 kcal/mol (6458.0730 without restraints) Performing minimization step: 2497. Total energy = 6464.2799 kcal/mol (6456.0258 without restraints) Performing minimization step: 2498. Total energy = 6462.2322 kcal/mol (6453.9798 without restraints) Performing minimization step: 2499. Total energy = 6460.1856 kcal/mol (6451.9349 without restraints) Performing minimization step: 2500. Total energy = 6458.1403 kcal/mol (6449.8912 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 6456.0963 kcal/mol (6447.8489 without restraints) Performing minimization step: 2502. Total energy = 6454.0535 kcal/mol (6445.8078 without restraints) Performing minimization step: 2503. Total energy = 6452.0126 kcal/mol (6443.7686 without restraints) Performing minimization step: 2504. Total energy = 6449.9727 kcal/mol (6441.7304 without restraints) Performing minimization step: 2505. Total energy = 6447.9344 kcal/mol (6439.6937 without restraints) Performing minimization step: 2506. Total energy = 6445.8973 kcal/mol (6437.6583 without restraints) Performing minimization step: 2507. Total energy = 6443.8616 kcal/mol (6435.6245 without restraints) Performing minimization step: 2508. Total energy = 6441.8274 kcal/mol (6433.5918 without restraints) Performing minimization step: 2509. Total energy = 6439.7943 kcal/mol (6431.5604 without restraints) Performing minimization step: 2510. Total energy = 6437.7628 kcal/mol (6429.5305 without restraints) Performing minimization step: 2511. Total energy = 6435.7327 kcal/mol (6427.5025 without restraints) Performing minimization step: 2512. Total energy = 6433.7042 kcal/mol (6425.4754 without restraints) Performing minimization step: 2513. Total energy = 6431.6765 kcal/mol (6423.4492 without restraints) Performing minimization step: 2514. Total energy = 6429.6498 kcal/mol (6421.4243 without restraints) Performing minimization step: 2515. Total energy = 6427.6249 kcal/mol (6419.4009 without restraints) Performing minimization step: 2516. Total energy = 6425.6009 kcal/mol (6417.3788 without restraints) Performing minimization step: 2517. Total energy = 6423.5785 kcal/mol (6415.3582 without restraints) Performing minimization step: 2518. Total energy = 6421.5575 kcal/mol (6413.3386 without restraints) Performing minimization step: 2519. Total energy = 6419.5378 kcal/mol (6411.3208 without restraints) Performing minimization step: 2520. Total energy = 6417.5194 kcal/mol (6409.3040 without restraints) Performing minimization step: 2521. Total energy = 6415.5023 kcal/mol (6407.2885 without restraints) Performing minimization step: 2522. Total energy = 6413.4865 kcal/mol (6405.2744 without restraints) Performing minimization step: 2523. Total energy = 6411.4721 kcal/mol (6403.2617 without restraints) Performing minimization step: 2524. Total energy = 6409.4592 kcal/mol (6401.2506 without restraints) Performing minimization step: 2525. Total energy = 6407.4475 kcal/mol (6399.2404 without restraints) Performing minimization step: 2526. Total energy = 6405.4375 kcal/mol (6397.2324 without restraints) Performing minimization step: 2527. Total energy = 6403.4290 kcal/mol (6395.2254 without restraints) Performing minimization step: 2528. Total energy = 6401.4215 kcal/mol (6393.2195 without restraints) Performing minimization step: 2529. Total energy = 6399.4152 kcal/mol (6391.2149 without restraints) Performing minimization step: 2530. Total energy = 6397.4104 kcal/mol (6389.2117 without restraints) Performing minimization step: 2531. Total energy = 6395.4069 kcal/mol (6387.2100 without restraints) Performing minimization step: 2532. Total energy = 6393.4048 kcal/mol (6385.2095 without restraints) Performing minimization step: 2533. Total energy = 6391.4040 kcal/mol (6383.2104 without restraints) Performing minimization step: 2534. Total energy = 6389.4044 kcal/mol (6381.2125 without restraints) Performing minimization step: 2535. Total energy = 6387.4064 kcal/mol (6379.2162 without restraints) Performing minimization step: 2536. Total energy = 6385.4098 kcal/mol (6377.2212 without restraints) Performing minimization step: 2537. Total energy = 6383.4144 kcal/mol (6375.2274 without restraints) Performing minimization step: 2538. Total energy = 6381.4203 kcal/mol (6373.2351 without restraints) Performing minimization step: 2539. Total energy = 6379.4278 kcal/mol (6371.2443 without restraints) Performing minimization step: 2540. Total energy = 6377.4366 kcal/mol (6369.2548 without restraints) Performing minimization step: 2541. Total energy = 6375.4472 kcal/mol (6367.2671 without restraints) Performing minimization step: 2542. Total energy = 6373.4589 kcal/mol (6365.2805 without restraints) Performing minimization step: 2543. Total energy = 6371.4722 kcal/mol (6363.2954 without restraints) Performing minimization step: 2544. Total energy = 6369.4868 kcal/mol (6361.3117 without restraints) Performing minimization step: 2545. Total energy = 6367.5023 kcal/mol (6359.3289 without restraints) Performing minimization step: 2546. Total energy = 6365.5194 kcal/mol (6357.3476 without restraints) Performing minimization step: 2547. Total energy = 6363.5382 kcal/mol (6355.3681 without restraints) Performing minimization step: 2548. Total energy = 6361.5580 kcal/mol (6353.3896 without restraints) Performing minimization step: 2549. Total energy = 6359.5793 kcal/mol (6351.4125 without restraints) Performing minimization step: 2550. Total energy = 6357.6017 kcal/mol (6349.4366 without restraints) Performing minimization step: 2551. Total energy = 6355.6256 kcal/mol (6347.4623 without restraints) Performing minimization step: 2552. Total energy = 6353.6513 kcal/mol (6345.4896 without restraints) Performing minimization step: 2553. Total energy = 6351.6778 kcal/mol (6343.5177 without restraints) Performing minimization step: 2554. Total energy = 6349.7062 kcal/mol (6341.5479 without restraints) Performing minimization step: 2555. Total energy = 6347.7359 kcal/mol (6339.5793 without restraints) Performing minimization step: 2556. Total energy = 6345.7676 kcal/mol (6337.6126 without restraints) Performing minimization step: 2557. Total energy = 6343.7999 kcal/mol (6335.6466 without restraints) Performing minimization step: 2558. Total energy = 6341.8339 kcal/mol (6333.6823 without restraints) Performing minimization step: 2559. Total energy = 6339.8689 kcal/mol (6331.7189 without restraints) Performing minimization step: 2560. Total energy = 6337.9052 kcal/mol (6329.7569 without restraints) Performing minimization step: 2561. Total energy = 6335.9430 kcal/mol (6327.7964 without restraints) Performing minimization step: 2562. Total energy = 6333.9823 kcal/mol (6325.8373 without restraints) Performing minimization step: 2563. Total energy = 6332.0230 kcal/mol (6323.8797 without restraints) Performing minimization step: 2564. Total energy = 6330.0651 kcal/mol (6321.9236 without restraints) Performing minimization step: 2565. Total energy = 6328.1092 kcal/mol (6319.9693 without restraints) Performing minimization step: 2566. Total energy = 6326.1540 kcal/mol (6318.0158 without restraints) Performing minimization step: 2567. Total energy = 6324.2002 kcal/mol (6316.0636 without restraints) Performing minimization step: 2568. Total energy = 6322.2482 kcal/mol (6314.1133 without restraints) Performing minimization step: 2569. Total energy = 6320.2975 kcal/mol (6312.1644 without restraints) Performing minimization step: 2570. Total energy = 6318.3479 kcal/mol (6310.2164 without restraints) Performing minimization step: 2571. Total energy = 6316.3998 kcal/mol (6308.2699 without restraints) Performing minimization step: 2572. Total energy = 6314.4530 kcal/mol (6306.3247 without restraints) Performing minimization step: 2573. Total energy = 6312.5080 kcal/mol (6304.3816 without restraints) Performing minimization step: 2574. Total energy = 6310.5642 kcal/mol (6302.4393 without restraints) Performing minimization step: 2575. Total energy = 6308.6217 kcal/mol (6300.4985 without restraints) Performing minimization step: 2576. Total energy = 6306.6803 kcal/mol (6298.5588 without restraints) Performing minimization step: 2577. Total energy = 6304.7408 kcal/mol (6296.6209 without restraints) Performing minimization step: 2578. Total energy = 6302.8024 kcal/mol (6294.6842 without restraints) Performing minimization step: 2579. Total energy = 6300.8655 kcal/mol (6292.7490 without restraints) Performing minimization step: 2580. Total energy = 6298.9302 kcal/mol (6290.8154 without restraints) Performing minimization step: 2581. Total energy = 6296.9963 kcal/mol (6288.8832 without restraints) Performing minimization step: 2582. Total energy = 6295.0636 kcal/mol (6286.9522 without restraints) Performing minimization step: 2583. Total energy = 6293.1326 kcal/mol (6285.0228 without restraints) Performing minimization step: 2584. Total energy = 6291.2031 kcal/mol (6283.0949 without restraints) Performing minimization step: 2585. Total energy = 6289.2746 kcal/mol (6281.1681 without restraints) Performing minimization step: 2586. Total energy = 6287.3481 kcal/mol (6279.2433 without restraints) Performing minimization step: 2587. Total energy = 6285.4224 kcal/mol (6277.3193 without restraints) Performing minimization step: 2588. Total energy = 6283.4982 kcal/mol (6275.3968 without restraints) Performing minimization step: 2589. Total energy = 6281.5755 kcal/mol (6273.4757 without restraints) Performing minimization step: 2590. Total energy = 6279.6544 kcal/mol (6271.5563 without restraints) Performing minimization step: 2591. Total energy = 6277.7346 kcal/mol (6269.6381 without restraints) Performing minimization step: 2592. Total energy = 6275.8161 kcal/mol (6267.7214 without restraints) Performing minimization step: 2593. Total energy = 6273.8992 kcal/mol (6265.8061 without restraints) Performing minimization step: 2594. Total energy = 6271.9836 kcal/mol (6263.8922 without restraints) Performing minimization step: 2595. Total energy = 6270.0693 kcal/mol (6261.9796 without restraints) Performing minimization step: 2596. Total energy = 6268.1566 kcal/mol (6260.0685 without restraints) Performing minimization step: 2597. Total energy = 6266.2453 kcal/mol (6258.1589 without restraints) Performing minimization step: 2598. Total energy = 6264.3358 kcal/mol (6256.2513 without restraints) Performing minimization step: 2599. Total energy = 6262.4274 kcal/mol (6254.3444 without restraints) Performing minimization step: 2600. Total energy = 6260.5206 kcal/mol (6252.4392 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 6258.6148 kcal/mol (6250.5351 without restraints) Performing minimization step: 2602. Total energy = 6256.7109 kcal/mol (6248.6329 without restraints) Performing minimization step: 2603. Total energy = 6254.8082 kcal/mol (6246.7319 without restraints) Performing minimization step: 2604. Total energy = 6252.9066 kcal/mol (6244.8319 without restraints) Performing minimization step: 2605. Total energy = 6251.0065 kcal/mol (6242.9336 without restraints) Performing minimization step: 2606. Total energy = 6249.1073 kcal/mol (6241.0360 without restraints) Performing minimization step: 2607. Total energy = 6247.2100 kcal/mol (6239.1405 without restraints) Performing minimization step: 2608. Total energy = 6245.3144 kcal/mol (6237.2464 without restraints) Performing minimization step: 2609. Total energy = 6243.4201 kcal/mol (6235.3538 without restraints) Performing minimization step: 2610. Total energy = 6241.5275 kcal/mol (6233.4628 without restraints) Performing minimization step: 2611. Total energy = 6239.6359 kcal/mol (6231.5729 without restraints) Performing minimization step: 2612. Total energy = 6237.7462 kcal/mol (6229.6850 without restraints) Performing minimization step: 2613. Total energy = 6235.8577 kcal/mol (6227.7981 without restraints) Performing minimization step: 2614. Total energy = 6233.9704 kcal/mol (6225.9124 without restraints) Performing minimization step: 2615. Total energy = 6232.0849 kcal/mol (6224.0286 without restraints) Performing minimization step: 2616. Total energy = 6230.2007 kcal/mol (6222.1461 without restraints) Performing minimization step: 2617. Total energy = 6228.3179 kcal/mol (6220.2650 without restraints) Performing minimization step: 2618. Total energy = 6226.4368 kcal/mol (6218.3855 without restraints) Performing minimization step: 2619. Total energy = 6224.5572 kcal/mol (6216.5076 without restraints) Performing minimization step: 2620. Total energy = 6222.6785 kcal/mol (6214.6306 without restraints) Performing minimization step: 2621. Total energy = 6220.8019 kcal/mol (6212.7556 without restraints) Performing minimization step: 2622. Total energy = 6218.9263 kcal/mol (6210.8817 without restraints) Performing minimization step: 2623. Total energy = 6217.0520 kcal/mol (6209.0090 without restraints) Performing minimization step: 2624. Total energy = 6215.1793 kcal/mol (6207.1381 without restraints) Performing minimization step: 2625. Total energy = 6213.3078 kcal/mol (6205.2683 without restraints) Performing minimization step: 2626. Total energy = 6211.4381 kcal/mol (6203.4003 without restraints) Performing minimization step: 2627. Total energy = 6209.5695 kcal/mol (6201.5333 without restraints) Performing minimization step: 2628. Total energy = 6207.7026 kcal/mol (6199.6681 without restraints) Performing minimization step: 2629. Total energy = 6205.8371 kcal/mol (6197.8043 without restraints) Performing minimization step: 2630. Total energy = 6203.9729 kcal/mol (6195.9417 without restraints) Performing minimization step: 2631. Total energy = 6202.1109 kcal/mol (6194.0813 without restraints) Performing minimization step: 2632. Total energy = 6200.2495 kcal/mol (6192.2217 without restraints) Performing minimization step: 2633. Total energy = 6198.3902 kcal/mol (6190.3641 without restraints) Performing minimization step: 2634. Total energy = 6196.5322 kcal/mol (6188.5078 without restraints) Performing minimization step: 2635. Total energy = 6194.6755 kcal/mol (6186.6527 without restraints) Performing minimization step: 2636. Total energy = 6192.8202 kcal/mol (6184.7991 without restraints) Performing minimization step: 2637. Total energy = 6190.9663 kcal/mol (6182.9468 without restraints) Performing minimization step: 2638. Total energy = 6189.1141 kcal/mol (6181.0963 without restraints) Performing minimization step: 2639. Total energy = 6187.2630 kcal/mol (6179.2468 without restraints) Performing minimization step: 2640. Total energy = 6185.4132 kcal/mol (6177.3988 without restraints) Performing minimization step: 2641. Total energy = 6183.5654 kcal/mol (6175.5527 without restraints) Performing minimization step: 2642. Total energy = 6181.7189 kcal/mol (6173.7078 without restraints) Performing minimization step: 2643. Total energy = 6179.8738 kcal/mol (6171.8643 without restraints) Performing minimization step: 2644. Total energy = 6178.0301 kcal/mol (6170.0223 without restraints) Performing minimization step: 2645. Total energy = 6176.1878 kcal/mol (6168.1817 without restraints) Performing minimization step: 2646. Total energy = 6174.3473 kcal/mol (6166.3428 without restraints) Performing minimization step: 2647. Total energy = 6172.5077 kcal/mol (6164.5050 without restraints) Performing minimization step: 2648. Total energy = 6170.6696 kcal/mol (6162.6685 without restraints) Performing minimization step: 2649. Total energy = 6168.8330 kcal/mol (6160.8336 without restraints) Performing minimization step: 2650. Total energy = 6166.9983 kcal/mol (6159.0006 without restraints) Performing minimization step: 2651. Total energy = 6165.1645 kcal/mol (6157.1684 without restraints) Performing minimization step: 2652. Total energy = 6163.3324 kcal/mol (6155.3380 without restraints) Performing minimization step: 2653. Total energy = 6161.5018 kcal/mol (6153.5091 without restraints) Performing minimization step: 2654. Total energy = 6159.6729 kcal/mol (6151.6819 without restraints) Performing minimization step: 2655. Total energy = 6157.8456 kcal/mol (6149.8563 without restraints) Performing minimization step: 2656. Total energy = 6156.0189 kcal/mol (6148.0310 without restraints) Performing minimization step: 2657. Total energy = 6154.1939 kcal/mol (6146.2079 without restraints) Performing minimization step: 2658. Total energy = 6152.3708 kcal/mol (6144.3864 without restraints) Performing minimization step: 2659. Total energy = 6150.5492 kcal/mol (6142.5665 without restraints) Performing minimization step: 2660. Total energy = 6148.7289 kcal/mol (6140.7480 without restraints) Performing minimization step: 2661. Total energy = 6146.9096 kcal/mol (6138.9302 without restraints) Performing minimization step: 2662. Total energy = 6145.0925 kcal/mol (6137.1148 without restraints) Performing minimization step: 2663. Total energy = 6143.2767 kcal/mol (6135.3007 without restraints) Performing minimization step: 2664. Total energy = 6141.4622 kcal/mol (6133.4878 without restraints) Performing minimization step: 2665. Total energy = 6139.6491 kcal/mol (6131.6765 without restraints) Performing minimization step: 2666. Total energy = 6137.8378 kcal/mol (6129.8669 without restraints) Performing minimization step: 2667. Total energy = 6136.0280 kcal/mol (6128.0586 without restraints) Performing minimization step: 2668. Total energy = 6134.2193 kcal/mol (6126.2516 without restraints) Performing minimization step: 2669. Total energy = 6132.4120 kcal/mol (6124.4461 without restraints) Performing minimization step: 2670. Total energy = 6130.6062 kcal/mol (6122.6417 without restraints) Performing minimization step: 2671. Total energy = 6128.8017 kcal/mol (6120.8391 without restraints) Performing minimization step: 2672. Total energy = 6126.9989 kcal/mol (6119.0380 without restraints) Performing minimization step: 2673. Total energy = 6125.1973 kcal/mol (6117.2381 without restraints) Performing minimization step: 2674. Total energy = 6123.3976 kcal/mol (6115.4400 without restraints) Performing minimization step: 2675. Total energy = 6121.5993 kcal/mol (6113.6434 without restraints) Performing minimization step: 2676. Total energy = 6119.8024 kcal/mol (6111.8481 without restraints) Performing minimization step: 2677. Total energy = 6118.0071 kcal/mol (6110.0545 without restraints) Performing minimization step: 2678. Total energy = 6116.2131 kcal/mol (6108.2621 without restraints) Performing minimization step: 2679. Total energy = 6114.4207 kcal/mol (6106.4717 without restraints) Performing minimization step: 2680. Total energy = 6112.6298 kcal/mol (6104.6822 without restraints) Performing minimization step: 2681. Total energy = 6110.8403 kcal/mol (6102.8944 without restraints) Performing minimization step: 2682. Total energy = 6109.0521 kcal/mol (6101.1078 without restraints) Performing minimization step: 2683. Total energy = 6107.2654 kcal/mol (6099.3228 without restraints) Performing minimization step: 2684. Total energy = 6105.4805 kcal/mol (6097.5396 without restraints) Performing minimization step: 2685. Total energy = 6103.6966 kcal/mol (6095.7574 without restraints) Performing minimization step: 2686. Total energy = 6101.9143 kcal/mol (6093.9768 without restraints) Performing minimization step: 2687. Total energy = 6100.1335 kcal/mol (6092.1977 without restraints) Performing minimization step: 2688. Total energy = 6098.3542 kcal/mol (6090.4200 without restraints) Performing minimization step: 2689. Total energy = 6096.5762 kcal/mol (6088.6438 without restraints) Performing minimization step: 2690. Total energy = 6094.8002 kcal/mol (6086.8693 without restraints) Performing minimization step: 2691. Total energy = 6093.0254 kcal/mol (6085.0962 without restraints) Performing minimization step: 2692. Total energy = 6091.2518 kcal/mol (6083.3244 without restraints) Performing minimization step: 2693. Total energy = 6089.4799 kcal/mol (6081.5541 without restraints) Performing minimization step: 2694. Total energy = 6087.7096 kcal/mol (6079.7854 without restraints) Performing minimization step: 2695. Total energy = 6085.9405 kcal/mol (6078.0180 without restraints) Performing minimization step: 2696. Total energy = 6084.1728 kcal/mol (6076.2519 without restraints) Performing minimization step: 2697. Total energy = 6082.4067 kcal/mol (6074.4876 without restraints) Performing minimization step: 2698. Total energy = 6080.6422 kcal/mol (6072.7247 without restraints) Performing minimization step: 2699. Total energy = 6078.8794 kcal/mol (6070.9636 without restraints) Performing minimization step: 2700. Total energy = 6077.1177 kcal/mol (6069.2035 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 6075.3574 kcal/mol (6067.4449 without restraints) Performing minimization step: 2702. Total energy = 6073.5986 kcal/mol (6065.6878 without restraints) Performing minimization step: 2703. Total energy = 6071.8415 kcal/mol (6063.9324 without restraints) Performing minimization step: 2704. Total energy = 6070.0857 kcal/mol (6062.1782 without restraints) Performing minimization step: 2705. Total energy = 6068.3309 kcal/mol (6060.4251 without restraints) Performing minimization step: 2706. Total energy = 6066.5779 kcal/mol (6058.6738 without restraints) Performing minimization step: 2707. Total energy = 6064.8266 kcal/mol (6056.9243 without restraints) Performing minimization step: 2708. Total energy = 6063.0767 kcal/mol (6055.1759 without restraints) Performing minimization step: 2709. Total energy = 6061.3282 kcal/mol (6053.4291 without restraints) Performing minimization step: 2710. Total energy = 6059.5811 kcal/mol (6051.6834 without restraints) Performing minimization step: 2711. Total energy = 6057.8353 kcal/mol (6049.9396 without restraints) Performing minimization step: 2712. Total energy = 6056.0916 kcal/mol (6048.1976 without restraints) Performing minimization step: 2713. Total energy = 6054.3492 kcal/mol (6046.4569 without restraints) Performing minimization step: 2714. Total energy = 6052.6083 kcal/mol (6044.7176 without restraints) Performing minimization step: 2715. Total energy = 6050.8687 kcal/mol (6042.9796 without restraints) Performing minimization step: 2716. Total energy = 6049.1305 kcal/mol (6041.2432 without restraints) Performing minimization step: 2717. Total energy = 6047.3939 kcal/mol (6039.5082 without restraints) Performing minimization step: 2718. Total energy = 6045.6589 kcal/mol (6037.7749 without restraints) Performing minimization step: 2719. Total energy = 6043.9253 kcal/mol (6036.0430 without restraints) Performing minimization step: 2720. Total energy = 6042.1930 kcal/mol (6034.3123 without restraints) Performing minimization step: 2721. Total energy = 6040.4623 kcal/mol (6032.5833 without restraints) Performing minimization step: 2722. Total energy = 6038.7330 kcal/mol (6030.8557 without restraints) Performing minimization step: 2723. Total energy = 6037.0056 kcal/mol (6029.1302 without restraints) Performing minimization step: 2724. Total energy = 6035.2795 kcal/mol (6027.4055 without restraints) Performing minimization step: 2725. Total energy = 6033.5546 kcal/mol (6025.6823 without restraints) Performing minimization step: 2726. Total energy = 6031.8315 kcal/mol (6023.9609 without restraints) Performing minimization step: 2727. Total energy = 6030.1098 kcal/mol (6022.2408 without restraints) Performing minimization step: 2728. Total energy = 6028.3892 kcal/mol (6020.5219 without restraints) Performing minimization step: 2729. Total energy = 6026.6701 kcal/mol (6018.8044 without restraints) Performing minimization step: 2730. Total energy = 6024.9524 kcal/mol (6017.0884 without restraints) Performing minimization step: 2731. Total energy = 6023.2364 kcal/mol (6015.3741 without restraints) Performing minimization step: 2732. Total energy = 6021.5218 kcal/mol (6013.6611 without restraints) Performing minimization step: 2733. Total energy = 6019.8085 kcal/mol (6011.9496 without restraints) Performing minimization step: 2734. Total energy = 6018.0967 kcal/mol (6010.2396 without restraints) Performing minimization step: 2735. Total energy = 6016.3864 kcal/mol (6008.5308 without restraints) Performing minimization step: 2736. Total energy = 6014.6777 kcal/mol (6006.8239 without restraints) Performing minimization step: 2737. Total energy = 6012.9706 kcal/mol (6005.1183 without restraints) Performing minimization step: 2738. Total energy = 6011.2647 kcal/mol (6003.4142 without restraints) Performing minimization step: 2739. Total energy = 6009.5604 kcal/mol (6001.7116 without restraints) Performing minimization step: 2740. Total energy = 6007.8581 kcal/mol (6000.0112 without restraints) Performing minimization step: 2741. Total energy = 6006.1567 kcal/mol (5998.3110 without restraints) Performing minimization step: 2742. Total energy = 6004.4566 kcal/mol (5996.6127 without restraints) Performing minimization step: 2743. Total energy = 6002.7580 kcal/mol (5994.9160 without restraints) Performing minimization step: 2744. Total energy = 6001.0608 kcal/mol (5993.2203 without restraints) Performing minimization step: 2745. Total energy = 5999.3653 kcal/mol (5991.5264 without restraints) Performing minimization step: 2746. Total energy = 5997.6714 kcal/mol (5989.8342 without restraints) Performing minimization step: 2747. Total energy = 5995.9789 kcal/mol (5988.1435 without restraints) Performing minimization step: 2748. Total energy = 5994.2880 kcal/mol (5986.4543 without restraints) Performing minimization step: 2749. Total energy = 5992.5984 kcal/mol (5984.7663 without restraints) Performing minimization step: 2750. Total energy = 5990.9102 kcal/mol (5983.0798 without restraints) Performing minimization step: 2751. Total energy = 5989.2236 kcal/mol (5981.3949 without restraints) Performing minimization step: 2752. Total energy = 5987.5385 kcal/mol (5979.7113 without restraints) Performing minimization step: 2753. Total energy = 5985.8554 kcal/mol (5978.0300 without restraints) Performing minimization step: 2754. Total energy = 5984.1731 kcal/mol (5976.3494 without restraints) Performing minimization step: 2755. Total energy = 5982.4924 kcal/mol (5974.6702 without restraints) Performing minimization step: 2756. Total energy = 5980.8129 kcal/mol (5972.9925 without restraints) Performing minimization step: 2757. Total energy = 5979.1348 kcal/mol (5971.3161 without restraints) Performing minimization step: 2758. Total energy = 5977.4583 kcal/mol (5969.6412 without restraints) Performing minimization step: 2759. Total energy = 5975.7830 kcal/mol (5967.9676 without restraints) Performing minimization step: 2760. Total energy = 5974.1098 kcal/mol (5966.2963 without restraints) Performing minimization step: 2761. Total energy = 5972.4381 kcal/mol (5964.6260 without restraints) Performing minimization step: 2762. Total energy = 5970.7678 kcal/mol (5962.9574 without restraints) Performing minimization step: 2763. Total energy = 5969.0987 kcal/mol (5961.2900 without restraints) Performing minimization step: 2764. Total energy = 5967.4310 kcal/mol (5959.6240 without restraints) Performing minimization step: 2765. Total energy = 5965.7648 kcal/mol (5957.9595 without restraints) Performing minimization step: 2766. Total energy = 5964.1001 kcal/mol (5956.2964 without restraints) Performing minimization step: 2767. Total energy = 5962.4369 kcal/mol (5954.6350 without restraints) Performing minimization step: 2768. Total energy = 5960.7752 kcal/mol (5952.9748 without restraints) Performing minimization step: 2769. Total energy = 5959.1151 kcal/mol (5951.3165 without restraints) Performing minimization step: 2770. Total energy = 5957.4560 kcal/mol (5949.6590 without restraints) Performing minimization step: 2771. Total energy = 5955.7987 kcal/mol (5948.0034 without restraints) Performing minimization step: 2772. Total energy = 5954.1434 kcal/mol (5946.3498 without restraints) Performing minimization step: 2773. Total energy = 5952.4891 kcal/mol (5944.6971 without restraints) Performing minimization step: 2774. Total energy = 5950.8365 kcal/mol (5943.0462 without restraints) Performing minimization step: 2775. Total energy = 5949.1848 kcal/mol (5941.3962 without restraints) Performing minimization step: 2776. Total energy = 5947.5349 kcal/mol (5939.7480 without restraints) Performing minimization step: 2777. Total energy = 5945.8862 kcal/mol (5938.1009 without restraints) Performing minimization step: 2778. Total energy = 5944.2389 kcal/mol (5936.4554 without restraints) Performing minimization step: 2779. Total energy = 5942.5931 kcal/mol (5934.8111 without restraints) Performing minimization step: 2780. Total energy = 5940.9489 kcal/mol (5933.1686 without restraints) Performing minimization step: 2781. Total energy = 5939.3063 kcal/mol (5931.5276 without restraints) Performing minimization step: 2782. Total energy = 5937.6647 kcal/mol (5929.8878 without restraints) Performing minimization step: 2783. Total energy = 5936.0250 kcal/mol (5928.2498 without restraints) Performing minimization step: 2784. Total energy = 5934.3867 kcal/mol (5926.6132 without restraints) Performing minimization step: 2785. Total energy = 5932.7496 kcal/mol (5924.9778 without restraints) Performing minimization step: 2786. Total energy = 5931.1146 kcal/mol (5923.3444 without restraints) Performing minimization step: 2787. Total energy = 5929.4809 kcal/mol (5921.7124 without restraints) Performing minimization step: 2788. Total energy = 5927.8482 kcal/mol (5920.0813 without restraints) Performing minimization step: 2789. Total energy = 5926.2172 kcal/mol (5918.4521 without restraints) Performing minimization step: 2790. Total energy = 5924.5879 kcal/mol (5916.8244 without restraints) Performing minimization step: 2791. Total energy = 5922.9600 kcal/mol (5915.1982 without restraints) Performing minimization step: 2792. Total energy = 5921.3329 kcal/mol (5913.5727 without restraints) Performing minimization step: 2793. Total energy = 5919.7078 kcal/mol (5911.9493 without restraints) Performing minimization step: 2794. Total energy = 5918.0835 kcal/mol (5910.3267 without restraints) Performing minimization step: 2795. Total energy = 5916.4610 kcal/mol (5908.7059 without restraints) Performing minimization step: 2796. Total energy = 5914.8399 kcal/mol (5907.0865 without restraints) Performing minimization step: 2797. Total energy = 5913.2200 kcal/mol (5905.4683 without restraints) Performing minimization step: 2798. Total energy = 5911.6016 kcal/mol (5903.8515 without restraints) Performing minimization step: 2799. Total energy = 5909.9847 kcal/mol (5902.2363 without restraints) Performing minimization step: 2800. Total energy = 5908.3698 kcal/mol (5900.6230 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 5906.7558 kcal/mol (5899.0107 without restraints) Performing minimization step: 2802. Total energy = 5905.1436 kcal/mol (5897.4003 without restraints) Performing minimization step: 2803. Total energy = 5903.5329 kcal/mol (5895.7912 without restraints) Performing minimization step: 2804. Total energy = 5901.9234 kcal/mol (5894.1834 without restraints) Performing minimization step: 2805. Total energy = 5900.3155 kcal/mol (5892.5771 without restraints) Performing minimization step: 2806. Total energy = 5898.7088 kcal/mol (5890.9722 without restraints) Performing minimization step: 2807. Total energy = 5897.1040 kcal/mol (5889.3692 without restraints) Performing minimization step: 2808. Total energy = 5895.5006 kcal/mol (5887.7672 without restraints) Performing minimization step: 2809. Total energy = 5893.8986 kcal/mol (5886.1670 without restraints) Performing minimization step: 2810. Total energy = 5892.2975 kcal/mol (5884.5675 without restraints) Performing minimization step: 2811. Total energy = 5890.6981 kcal/mol (5882.9699 without restraints) Performing minimization step: 2812. Total energy = 5889.1006 kcal/mol (5881.3740 without restraints) Performing minimization step: 2813. Total energy = 5887.5043 kcal/mol (5879.7794 without restraints) Performing minimization step: 2814. Total energy = 5885.9094 kcal/mol (5878.1862 without restraints) Performing minimization step: 2815. Total energy = 5884.3160 kcal/mol (5876.5946 without restraints) Performing minimization step: 2816. Total energy = 5882.7247 kcal/mol (5875.0050 without restraints) Performing minimization step: 2817. Total energy = 5881.1341 kcal/mol (5873.4159 without restraints) Performing minimization step: 2818. Total energy = 5879.5448 kcal/mol (5871.8282 without restraints) Performing minimization step: 2819. Total energy = 5877.9575 kcal/mol (5870.2427 without restraints) Performing minimization step: 2820. Total energy = 5876.3710 kcal/mol (5868.6578 without restraints) Performing minimization step: 2821. Total energy = 5874.7861 kcal/mol (5867.0746 without restraints) Performing minimization step: 2822. Total energy = 5873.2024 kcal/mol (5865.4926 without restraints) Performing minimization step: 2823. Total energy = 5871.6204 kcal/mol (5863.9123 without restraints) Performing minimization step: 2824. Total energy = 5870.0405 kcal/mol (5862.3340 without restraints) Performing minimization step: 2825. Total energy = 5868.4611 kcal/mol (5860.7562 without restraints) Performing minimization step: 2826. Total energy = 5866.8831 kcal/mol (5859.1800 without restraints) Performing minimization step: 2827. Total energy = 5865.3062 kcal/mol (5857.6046 without restraints) Performing minimization step: 2828. Total energy = 5863.7308 kcal/mol (5856.0310 without restraints) Performing minimization step: 2829. Total energy = 5862.1571 kcal/mol (5854.4591 without restraints) Performing minimization step: 2830. Total energy = 5860.5849 kcal/mol (5852.8885 without restraints) Performing minimization step: 2831. Total energy = 5859.0142 kcal/mol (5851.3195 without restraints) Performing minimization step: 2832. Total energy = 5857.4448 kcal/mol (5849.7517 without restraints) Performing minimization step: 2833. Total energy = 5855.8769 kcal/mol (5848.1855 without restraints) Performing minimization step: 2834. Total energy = 5854.3103 kcal/mol (5846.6206 without restraints) Performing minimization step: 2835. Total energy = 5852.7454 kcal/mol (5845.0573 without restraints) Performing minimization step: 2836. Total energy = 5851.1816 kcal/mol (5843.4953 without restraints) Performing minimization step: 2837. Total energy = 5849.6194 kcal/mol (5841.9348 without restraints) Performing minimization step: 2838. Total energy = 5848.0587 kcal/mol (5840.3757 without restraints) Performing minimization step: 2839. Total energy = 5846.4991 kcal/mol (5838.8178 without restraints) Performing minimization step: 2840. Total energy = 5844.9411 kcal/mol (5837.2614 without restraints) Performing minimization step: 2841. Total energy = 5843.3844 kcal/mol (5835.7064 without restraints) Performing minimization step: 2842. Total energy = 5841.8292 kcal/mol (5834.1529 without restraints) Performing minimization step: 2843. Total energy = 5840.2753 kcal/mol (5832.6007 without restraints) Performing minimization step: 2844. Total energy = 5838.7229 kcal/mol (5831.0500 without restraints) Performing minimization step: 2845. Total energy = 5837.1718 kcal/mol (5829.5006 without restraints) Performing minimization step: 2846. Total energy = 5835.6225 kcal/mol (5827.9529 without restraints) Performing minimization step: 2847. Total energy = 5834.0743 kcal/mol (5826.4064 without restraints) Performing minimization step: 2848. Total energy = 5832.5278 kcal/mol (5824.8616 without restraints) Performing minimization step: 2849. Total energy = 5830.9827 kcal/mol (5823.3181 without restraints) Performing minimization step: 2850. Total energy = 5829.4389 kcal/mol (5821.7762 without restraints) Performing minimization step: 2851. Total energy = 5827.8969 kcal/mol (5820.2357 without restraints) Performing minimization step: 2852. Total energy = 5826.3561 kcal/mol (5818.6965 without restraints) Performing minimization step: 2853. Total energy = 5824.8166 kcal/mol (5817.1587 without restraints) Performing minimization step: 2854. Total energy = 5823.2787 kcal/mol (5815.6225 without restraints) Performing minimization step: 2855. Total energy = 5821.7417 kcal/mol (5814.0873 without restraints) Performing minimization step: 2856. Total energy = 5820.2062 kcal/mol (5812.5534 without restraints) Performing minimization step: 2857. Total energy = 5818.6721 kcal/mol (5811.0210 without restraints) Performing minimization step: 2858. Total energy = 5817.1395 kcal/mol (5809.4899 without restraints) Performing minimization step: 2859. Total energy = 5815.6080 kcal/mol (5807.9603 without restraints) Performing minimization step: 2860. Total energy = 5814.0781 kcal/mol (5806.4320 without restraints) Performing minimization step: 2861. Total energy = 5812.5494 kcal/mol (5804.9049 without restraints) Performing minimization step: 2862. Total energy = 5811.0222 kcal/mol (5803.3795 without restraints) Performing minimization step: 2863. Total energy = 5809.4966 kcal/mol (5801.8557 without restraints) Performing minimization step: 2864. Total energy = 5807.9728 kcal/mol (5800.3334 without restraints) Performing minimization step: 2865. Total energy = 5806.4502 kcal/mol (5798.8125 without restraints) Performing minimization step: 2866. Total energy = 5804.9289 kcal/mol (5797.2929 without restraints) Performing minimization step: 2867. Total energy = 5803.4087 kcal/mol (5795.7744 without restraints) Performing minimization step: 2868. Total energy = 5801.8898 kcal/mol (5794.2572 without restraints) Performing minimization step: 2869. Total energy = 5800.3729 kcal/mol (5792.7420 without restraints) Performing minimization step: 2870. Total energy = 5798.8568 kcal/mol (5791.2275 without restraints) Performing minimization step: 2871. Total energy = 5797.3424 kcal/mol (5789.7149 without restraints) Performing minimization step: 2872. Total energy = 5795.8296 kcal/mol (5788.2037 without restraints) Performing minimization step: 2873. Total energy = 5794.3176 kcal/mol (5786.6934 without restraints) Performing minimization step: 2874. Total energy = 5792.8072 kcal/mol (5785.1846 without restraints) Performing minimization step: 2875. Total energy = 5791.2983 kcal/mol (5783.6775 without restraints) Performing minimization step: 2876. Total energy = 5789.7907 kcal/mol (5782.1715 without restraints) Performing minimization step: 2877. Total energy = 5788.2844 kcal/mol (5780.6668 without restraints) Performing minimization step: 2878. Total energy = 5786.7795 kcal/mol (5779.1636 without restraints) Performing minimization step: 2879. Total energy = 5785.2761 kcal/mol (5777.6619 without restraints) Performing minimization step: 2880. Total energy = 5783.7742 kcal/mol (5776.1617 without restraints) Performing minimization step: 2881. Total energy = 5782.2735 kcal/mol (5774.6626 without restraints) Performing minimization step: 2882. Total energy = 5780.7740 kcal/mol (5773.1648 without restraints) Performing minimization step: 2883. Total energy = 5779.2760 kcal/mol (5771.6687 without restraints) Performing minimization step: 2884. Total energy = 5777.7795 kcal/mol (5770.1737 without restraints) Performing minimization step: 2885. Total energy = 5776.2845 kcal/mol (5768.6804 without restraints) Performing minimization step: 2886. Total energy = 5774.7906 kcal/mol (5767.1882 without restraints) Performing minimization step: 2887. Total energy = 5773.2985 kcal/mol (5765.6978 without restraints) Performing minimization step: 2888. Total energy = 5771.8073 kcal/mol (5764.2081 without restraints) Performing minimization step: 2889. Total energy = 5770.3174 kcal/mol (5762.7201 without restraints) Performing minimization step: 2890. Total energy = 5768.8290 kcal/mol (5761.2334 without restraints) Performing minimization step: 2891. Total energy = 5767.3424 kcal/mol (5759.7483 without restraints) Performing minimization step: 2892. Total energy = 5765.8566 kcal/mol (5758.2642 without restraints) Performing minimization step: 2893. Total energy = 5764.3724 kcal/mol (5756.7818 without restraints) Performing minimization step: 2894. Total energy = 5762.8895 kcal/mol (5755.3005 without restraints) Performing minimization step: 2895. Total energy = 5761.4077 kcal/mol (5753.8204 without restraints) Performing minimization step: 2896. Total energy = 5759.9274 kcal/mol (5752.3418 without restraints) Performing minimization step: 2897. Total energy = 5758.4488 kcal/mol (5750.8649 without restraints) Performing minimization step: 2898. Total energy = 5756.9718 kcal/mol (5749.3895 without restraints) Performing minimization step: 2899. Total energy = 5755.4959 kcal/mol (5747.9154 without restraints) Performing minimization step: 2900. Total energy = 5754.0216 kcal/mol (5746.4427 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 5752.5483 kcal/mol (5744.9710 without restraints) Performing minimization step: 2902. Total energy = 5751.0764 kcal/mol (5743.5009 without restraints) Performing minimization step: 2903. Total energy = 5749.6060 kcal/mol (5742.0321 without restraints) Performing minimization step: 2904. Total energy = 5748.1367 kcal/mol (5740.5645 without restraints) Performing minimization step: 2905. Total energy = 5746.6691 kcal/mol (5739.0986 without restraints) Performing minimization step: 2906. Total energy = 5745.2025 kcal/mol (5737.6337 without restraints) Performing minimization step: 2907. Total energy = 5743.7375 kcal/mol (5736.1704 without restraints) Performing minimization step: 2908. Total energy = 5742.2738 kcal/mol (5734.7084 without restraints) Performing minimization step: 2909. Total energy = 5740.8112 kcal/mol (5733.2474 without restraints) Performing minimization step: 2910. Total energy = 5739.3505 kcal/mol (5731.7884 without restraints) Performing minimization step: 2911. Total energy = 5737.8908 kcal/mol (5730.3304 without restraints) Performing minimization step: 2912. Total energy = 5736.4326 kcal/mol (5728.8739 without restraints) Performing minimization step: 2913. Total energy = 5734.9755 kcal/mol (5727.4185 without restraints) Performing minimization step: 2914. Total energy = 5733.5195 kcal/mol (5725.9642 without restraints) Performing minimization step: 2915. Total energy = 5732.0646 kcal/mol (5724.5109 without restraints) Performing minimization step: 2916. Total energy = 5730.6119 kcal/mol (5723.0599 without restraints) Performing minimization step: 2917. Total energy = 5729.1600 kcal/mol (5721.6098 without restraints) Performing minimization step: 2918. Total energy = 5727.7099 kcal/mol (5720.1614 without restraints) Performing minimization step: 2919. Total energy = 5726.2608 kcal/mol (5718.7138 without restraints) Performing minimization step: 2920. Total energy = 5724.8133 kcal/mol (5717.2680 without restraints) Performing minimization step: 2921. Total energy = 5723.3669 kcal/mol (5715.8234 without restraints) Performing minimization step: 2922. Total energy = 5721.9219 kcal/mol (5714.3799 without restraints) Performing minimization step: 2923. Total energy = 5720.4780 kcal/mol (5712.9377 without restraints) Performing minimization step: 2924. Total energy = 5719.0359 kcal/mol (5711.4973 without restraints) Performing minimization step: 2925. Total energy = 5717.5948 kcal/mol (5710.0579 without restraints) Performing minimization step: 2926. Total energy = 5716.1550 kcal/mol (5708.6198 without restraints) Performing minimization step: 2927. Total energy = 5714.7165 kcal/mol (5707.1830 without restraints) Performing minimization step: 2928. Total energy = 5713.2792 kcal/mol (5705.7475 without restraints) Performing minimization step: 2929. Total energy = 5711.8440 kcal/mol (5704.3138 without restraints) Performing minimization step: 2930. Total energy = 5710.4098 kcal/mol (5702.8813 without restraints) Performing minimization step: 2931. Total energy = 5708.9769 kcal/mol (5701.4500 without restraints) Performing minimization step: 2932. Total energy = 5707.5452 kcal/mol (5700.0201 without restraints) Performing minimization step: 2933. Total energy = 5706.1147 kcal/mol (5698.5913 without restraints) Performing minimization step: 2934. Total energy = 5704.6860 kcal/mol (5697.1642 without restraints) Performing minimization step: 2935. Total energy = 5703.2581 kcal/mol (5695.7380 without restraints) Performing minimization step: 2936. Total energy = 5701.8315 kcal/mol (5694.3131 without restraints) Performing minimization step: 2937. Total energy = 5700.4062 kcal/mol (5692.8895 without restraints) Performing minimization step: 2938. Total energy = 5698.9823 kcal/mol (5691.4672 without restraints) Performing minimization step: 2939. Total energy = 5697.5599 kcal/mol (5690.0465 without restraints) Performing minimization step: 2940. Total energy = 5696.1385 kcal/mol (5688.6269 without restraints) Performing minimization step: 2941. Total energy = 5694.7188 kcal/mol (5687.2088 without restraints) Performing minimization step: 2942. Total energy = 5693.2997 kcal/mol (5685.7914 without restraints) Performing minimization step: 2943. Total energy = 5691.8823 kcal/mol (5684.3756 without restraints) Performing minimization step: 2944. Total energy = 5690.4664 kcal/mol (5682.9615 without restraints) Performing minimization step: 2945. Total energy = 5689.0513 kcal/mol (5681.5480 without restraints) Performing minimization step: 2946. Total energy = 5687.6378 kcal/mol (5680.1362 without restraints) Performing minimization step: 2947. Total energy = 5686.2256 kcal/mol (5678.7257 without restraints) Performing minimization step: 2948. Total energy = 5684.8148 kcal/mol (5677.3165 without restraints) Performing minimization step: 2949. Total energy = 5683.4055 kcal/mol (5675.9089 without restraints) Performing minimization step: 2950. Total energy = 5681.9975 kcal/mol (5674.5026 without restraints) Performing minimization step: 2951. Total energy = 5680.5905 kcal/mol (5673.0973 without restraints) Performing minimization step: 2952. Total energy = 5679.1849 kcal/mol (5671.6934 without restraints) Performing minimization step: 2953. Total energy = 5677.7807 kcal/mol (5670.2909 without restraints) Performing minimization step: 2954. Total energy = 5676.3775 kcal/mol (5668.8892 without restraints) Performing minimization step: 2955. Total energy = 5674.9757 kcal/mol (5667.4893 without restraints) Performing minimization step: 2956. Total energy = 5673.5757 kcal/mol (5666.0909 without restraints) Performing minimization step: 2957. Total energy = 5672.1765 kcal/mol (5664.6933 without restraints) Performing minimization step: 2958. Total energy = 5670.7786 kcal/mol (5663.2972 without restraints) Performing minimization step: 2959. Total energy = 5669.3820 kcal/mol (5661.9022 without restraints) Performing minimization step: 2960. Total energy = 5667.9870 kcal/mol (5660.5090 without restraints) Performing minimization step: 2961. Total energy = 5666.5930 kcal/mol (5659.1166 without restraints) Performing minimization step: 2962. Total energy = 5665.2005 kcal/mol (5657.7258 without restraints) Performing minimization step: 2963. Total energy = 5663.8090 kcal/mol (5656.3360 without restraints) Performing minimization step: 2964. Total energy = 5662.4188 kcal/mol (5654.9475 without restraints) Performing minimization step: 2965. Total energy = 5661.0303 kcal/mol (5653.5606 without restraints) Performing minimization step: 2966. Total energy = 5659.6427 kcal/mol (5652.1747 without restraints) Performing minimization step: 2967. Total energy = 5658.2567 kcal/mol (5650.7904 without restraints) Performing minimization step: 2968. Total energy = 5656.8717 kcal/mol (5649.4070 without restraints) Performing minimization step: 2969. Total energy = 5655.4879 kcal/mol (5648.0249 without restraints) Performing minimization step: 2970. Total energy = 5654.1054 kcal/mol (5646.6441 without restraints) Performing minimization step: 2971. Total energy = 5652.7243 kcal/mol (5645.2647 without restraints) Performing minimization step: 2972. Total energy = 5651.3443 kcal/mol (5643.8864 without restraints) Performing minimization step: 2973. Total energy = 5649.9656 kcal/mol (5642.5094 without restraints) Performing minimization step: 2974. Total energy = 5648.5882 kcal/mol (5641.1338 without restraints) Performing minimization step: 2975. Total energy = 5647.2121 kcal/mol (5639.7593 without restraints) Performing minimization step: 2976. Total energy = 5645.8372 kcal/mol (5638.3860 without restraints) Performing minimization step: 2977. Total energy = 5644.4634 kcal/mol (5637.0139 without restraints) Performing minimization step: 2978. Total energy = 5643.0912 kcal/mol (5635.6434 without restraints) Performing minimization step: 2979. Total energy = 5641.7202 kcal/mol (5634.2740 without restraints) Performing minimization step: 2980. Total energy = 5640.3503 kcal/mol (5632.9059 without restraints) Performing minimization step: 2981. Total energy = 5638.9818 kcal/mol (5631.5390 without restraints) Performing minimization step: 2982. Total energy = 5637.6146 kcal/mol (5630.1735 without restraints) Performing minimization step: 2983. Total energy = 5636.2491 kcal/mol (5628.8097 without restraints) Performing minimization step: 2984. Total energy = 5634.8845 kcal/mol (5627.4468 without restraints) Performing minimization step: 2985. Total energy = 5633.5210 kcal/mol (5626.0849 without restraints) Performing minimization step: 2986. Total energy = 5632.1591 kcal/mol (5624.7249 without restraints) Performing minimization step: 2987. Total energy = 5630.7982 kcal/mol (5623.3656 without restraints) Performing minimization step: 2988. Total energy = 5629.4384 kcal/mol (5622.0074 without restraints) Performing minimization step: 2989. Total energy = 5628.0800 kcal/mol (5620.6508 without restraints) Performing minimization step: 2990. Total energy = 5626.7229 kcal/mol (5619.2953 without restraints) Performing minimization step: 2991. Total energy = 5625.3669 kcal/mol (5617.9409 without restraints) Performing minimization step: 2992. Total energy = 5624.0133 kcal/mol (5616.5890 without restraints) Performing minimization step: 2993. Total energy = 5622.6592 kcal/mol (5615.2366 without restraints) Performing minimization step: 2994. Total energy = 5621.3070 kcal/mol (5613.8860 without restraints) Performing minimization step: 2995. Total energy = 5619.9561 kcal/mol (5612.5369 without restraints) Performing minimization step: 2996. Total energy = 5618.6063 kcal/mol (5611.1887 without restraints) Performing minimization step: 2997. Total energy = 5617.2577 kcal/mol (5609.8418 without restraints) Performing minimization step: 2998. Total energy = 5615.9107 kcal/mol (5608.4965 without restraints) Performing minimization step: 2999. Total energy = 5614.5651 kcal/mol (5607.1525 without restraints) Performing minimization step: 3000. Total energy = 5613.2200 kcal/mol (5605.8091 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 5611.8764 kcal/mol (5604.4672 without restraints) Performing minimization step: 3002. Total energy = 5610.5336 kcal/mol (5603.1263 without restraints) Performing minimization step: 3003. Total energy = 5609.1923 kcal/mol (5601.7865 without restraints) Performing minimization step: 3004. Total energy = 5607.8528 kcal/mol (5600.4487 without restraints) Performing minimization step: 3005. Total energy = 5606.5140 kcal/mol (5599.1115 without restraints) Performing minimization step: 3006. Total energy = 5605.1764 kcal/mol (5597.7757 without restraints) Performing minimization step: 3007. Total energy = 5603.8402 kcal/mol (5596.4412 without restraints) Performing minimization step: 3008. Total energy = 5602.5054 kcal/mol (5595.1080 without restraints) Performing minimization step: 3009. Total energy = 5601.1716 kcal/mol (5593.7759 without restraints) Performing minimization step: 3010. Total energy = 5599.8389 kcal/mol (5592.4449 without restraints) Performing minimization step: 3011. Total energy = 5598.5076 kcal/mol (5591.1152 without restraints) Performing minimization step: 3012. Total energy = 5597.1774 kcal/mol (5589.7867 without restraints) Performing minimization step: 3013. Total energy = 5595.8491 kcal/mol (5588.4601 without restraints) Performing minimization step: 3014. Total energy = 5594.5213 kcal/mol (5587.1340 without restraints) Performing minimization step: 3015. Total energy = 5593.1952 kcal/mol (5585.8096 without restraints) Performing minimization step: 3016. Total energy = 5591.8700 kcal/mol (5584.4860 without restraints) Performing minimization step: 3017. Total energy = 5590.5461 kcal/mol (5583.1639 without restraints) Performing minimization step: 3018. Total energy = 5589.2233 kcal/mol (5581.8427 without restraints) Performing minimization step: 3019. Total energy = 5587.9018 kcal/mol (5580.5231 without restraints) Performing minimization step: 3020. Total energy = 5586.5824 kcal/mol (5579.2052 without restraints) Performing minimization step: 3021. Total energy = 5585.2634 kcal/mol (5577.8880 without restraints) Performing minimization step: 3022. Total energy = 5583.9458 kcal/mol (5576.5719 without restraints) Performing minimization step: 3023. Total energy = 5582.6287 kcal/mol (5575.2565 without restraints) Performing minimization step: 3024. Total energy = 5581.3133 kcal/mol (5573.9428 without restraints) Performing minimization step: 3025. Total energy = 5579.9987 kcal/mol (5572.6297 without restraints) Performing minimization step: 3026. Total energy = 5578.6854 kcal/mol (5571.3184 without restraints) Performing minimization step: 3027. Total energy = 5577.3734 kcal/mol (5570.0080 without restraints) Performing minimization step: 3028. Total energy = 5576.0626 kcal/mol (5568.6988 without restraints) Performing minimization step: 3029. Total energy = 5574.7536 kcal/mol (5567.3915 without restraints) Performing minimization step: 3030. Total energy = 5573.4460 kcal/mol (5566.0856 without restraints) Performing minimization step: 3031. Total energy = 5572.1387 kcal/mol (5564.7800 without restraints) Performing minimization step: 3032. Total energy = 5570.8328 kcal/mol (5563.4758 without restraints) Performing minimization step: 3033. Total energy = 5569.5279 kcal/mol (5562.1725 without restraints) Performing minimization step: 3034. Total energy = 5568.2243 kcal/mol (5560.8707 without restraints) Performing minimization step: 3035. Total energy = 5566.9223 kcal/mol (5559.5704 without restraints) Performing minimization step: 3036. Total energy = 5565.6215 kcal/mol (5558.2712 without restraints) Performing minimization step: 3037. Total energy = 5564.3218 kcal/mol (5556.9731 without restraints) Performing minimization step: 3038. Total energy = 5563.0228 kcal/mol (5555.6760 without restraints) Performing minimization step: 3039. Total energy = 5561.7255 kcal/mol (5554.3802 without restraints) Performing minimization step: 3040. Total energy = 5560.4289 kcal/mol (5553.0854 without restraints) Performing minimization step: 3041. Total energy = 5559.1336 kcal/mol (5551.7917 without restraints) Performing minimization step: 3042. Total energy = 5557.8394 kcal/mol (5550.4991 without restraints) Performing minimization step: 3043. Total energy = 5556.5463 kcal/mol (5549.2077 without restraints) Performing minimization step: 3044. Total energy = 5555.2544 kcal/mol (5547.9175 without restraints) Performing minimization step: 3045. Total energy = 5553.9640 kcal/mol (5546.6288 without restraints) Performing minimization step: 3046. Total energy = 5552.6744 kcal/mol (5545.3409 without restraints) Performing minimization step: 3047. Total energy = 5551.3862 kcal/mol (5544.0544 without restraints) Performing minimization step: 3048. Total energy = 5550.0990 kcal/mol (5542.7689 without restraints) Performing minimization step: 3049. Total energy = 5548.8130 kcal/mol (5541.4845 without restraints) Performing minimization step: 3050. Total energy = 5547.5281 kcal/mol (5540.2013 without restraints) Performing minimization step: 3051. Total energy = 5546.2447 kcal/mol (5538.9197 without restraints) Performing minimization step: 3052. Total energy = 5544.9623 kcal/mol (5537.6388 without restraints) Performing minimization step: 3053. Total energy = 5543.6808 kcal/mol (5536.3591 without restraints) Performing minimization step: 3054. Total energy = 5542.4006 kcal/mol (5535.0804 without restraints) Performing minimization step: 3055. Total energy = 5541.1216 kcal/mol (5533.8032 without restraints) Performing minimization step: 3056. Total energy = 5539.8439 kcal/mol (5532.5272 without restraints) Performing minimization step: 3057. Total energy = 5538.5674 kcal/mol (5531.2523 without restraints) Performing minimization step: 3058. Total energy = 5537.2920 kcal/mol (5529.9786 without restraints) Performing minimization step: 3059. Total energy = 5536.0173 kcal/mol (5528.7056 without restraints) Performing minimization step: 3060. Total energy = 5534.7441 kcal/mol (5527.4341 without restraints) Performing minimization step: 3061. Total energy = 5533.4722 kcal/mol (5526.1639 without restraints) Performing minimization step: 3062. Total energy = 5532.2016 kcal/mol (5524.8951 without restraints) Performing minimization step: 3063. Total energy = 5530.9321 kcal/mol (5523.6272 without restraints) Performing minimization step: 3064. Total energy = 5529.6632 kcal/mol (5522.3599 without restraints) Performing minimization step: 3065. Total energy = 5528.3962 kcal/mol (5521.0946 without restraints) Performing minimization step: 3066. Total energy = 5527.1298 kcal/mol (5519.8299 without restraints) Performing minimization step: 3067. Total energy = 5525.8646 kcal/mol (5518.5664 without restraints) Performing minimization step: 3068. Total energy = 5524.6009 kcal/mol (5517.3044 without restraints) Performing minimization step: 3069. Total energy = 5523.3381 kcal/mol (5516.0432 without restraints) Performing minimization step: 3070. Total energy = 5522.0764 kcal/mol (5514.7831 without restraints) Performing minimization step: 3071. Total energy = 5520.8157 kcal/mol (5513.5241 without restraints) Performing minimization step: 3072. Total energy = 5519.5564 kcal/mol (5512.2665 without restraints) Performing minimization step: 3073. Total energy = 5518.2984 kcal/mol (5511.0102 without restraints) Performing minimization step: 3074. Total energy = 5517.0416 kcal/mol (5509.7551 without restraints) Performing minimization step: 3075. Total energy = 5515.7859 kcal/mol (5508.5011 without restraints) Performing minimization step: 3076. Total energy = 5514.5308 kcal/mol (5507.2477 without restraints) Performing minimization step: 3077. Total energy = 5513.2773 kcal/mol (5505.9959 without restraints) Performing minimization step: 3078. Total energy = 5512.0242 kcal/mol (5504.7444 without restraints) Performing minimization step: 3079. Total energy = 5510.7726 kcal/mol (5503.4945 without restraints) Performing minimization step: 3080. Total energy = 5509.5221 kcal/mol (5502.2457 without restraints) Performing minimization step: 3081. Total energy = 5508.2728 kcal/mol (5500.9980 without restraints) Performing minimization step: 3082. Total energy = 5507.0246 kcal/mol (5499.7515 without restraints) Performing minimization step: 3083. Total energy = 5505.7778 kcal/mol (5498.5062 without restraints) Performing minimization step: 3084. Total energy = 5504.5318 kcal/mol (5497.2621 without restraints) Performing minimization step: 3085. Total energy = 5503.2869 kcal/mol (5496.0190 without restraints) Performing minimization step: 3086. Total energy = 5502.0433 kcal/mol (5494.7769 without restraints) Performing minimization step: 3087. Total energy = 5500.8010 kcal/mol (5493.5364 without restraints) Performing minimization step: 3088. Total energy = 5499.5597 kcal/mol (5492.2967 without restraints) Performing minimization step: 3089. Total energy = 5498.3192 kcal/mol (5491.0579 without restraints) Performing minimization step: 3090. Total energy = 5497.0801 kcal/mol (5489.8204 without restraints) Performing minimization step: 3091. Total energy = 5495.8426 kcal/mol (5488.5847 without restraints) Performing minimization step: 3092. Total energy = 5494.6055 kcal/mol (5487.3492 without restraints) Performing minimization step: 3093. Total energy = 5493.3697 kcal/mol (5486.1151 without restraints) Performing minimization step: 3094. Total energy = 5492.1346 kcal/mol (5484.8818 without restraints) Performing minimization step: 3095. Total energy = 5490.9010 kcal/mol (5483.6497 without restraints) Performing minimization step: 3096. Total energy = 5489.6679 kcal/mol (5482.4184 without restraints) Performing minimization step: 3097. Total energy = 5488.4363 kcal/mol (5481.1884 without restraints) Performing minimization step: 3098. Total energy = 5487.2056 kcal/mol (5479.9593 without restraints) Performing minimization step: 3099. Total energy = 5485.9762 kcal/mol (5478.7316 without restraints) Performing minimization step: 3100. Total energy = 5484.7478 kcal/mol (5477.5050 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 5483.5206 kcal/mol (5476.2794 without restraints) Performing minimization step: 3102. Total energy = 5482.2948 kcal/mol (5475.0553 without restraints) Performing minimization step: 3103. Total energy = 5481.0699 kcal/mol (5473.8321 without restraints) Performing minimization step: 3104. Total energy = 5479.8457 kcal/mol (5472.6096 without restraints) Performing minimization step: 3105. Total energy = 5478.6231 kcal/mol (5471.3886 without restraints) Performing minimization step: 3106. Total energy = 5477.4022 kcal/mol (5470.1695 without restraints) Performing minimization step: 3107. Total energy = 5476.1815 kcal/mol (5468.9504 without restraints) Performing minimization step: 3108. Total energy = 5474.9621 kcal/mol (5467.7328 without restraints) Performing minimization step: 3109. Total energy = 5473.7440 kcal/mol (5466.5161 without restraints) Performing minimization step: 3110. Total energy = 5472.5266 kcal/mol (5465.3006 without restraints) Performing minimization step: 3111. Total energy = 5471.3101 kcal/mol (5464.0857 without restraints) Performing minimization step: 3112. Total energy = 5470.0950 kcal/mol (5462.8723 without restraints) Performing minimization step: 3113. Total energy = 5468.8809 kcal/mol (5461.6598 without restraints) Performing minimization step: 3114. Total energy = 5467.6681 kcal/mol (5460.4487 without restraints) Performing minimization step: 3115. Total energy = 5466.4560 kcal/mol (5459.2383 without restraints) Performing minimization step: 3116. Total energy = 5465.2452 kcal/mol (5458.0292 without restraints) Performing minimization step: 3117. Total energy = 5464.0354 kcal/mol (5456.8211 without restraints) Performing minimization step: 3118. Total energy = 5462.8263 kcal/mol (5455.6137 without restraints) Performing minimization step: 3119. Total energy = 5461.6189 kcal/mol (5454.4081 without restraints) Performing minimization step: 3120. Total energy = 5460.4124 kcal/mol (5453.2031 without restraints) Performing minimization step: 3121. Total energy = 5459.2069 kcal/mol (5451.9993 without restraints) Performing minimization step: 3122. Total energy = 5458.0026 kcal/mol (5450.7966 without restraints) Performing minimization step: 3123. Total energy = 5456.7993 kcal/mol (5449.5951 without restraints) Performing minimization step: 3124. Total energy = 5455.5973 kcal/mol (5448.3947 without restraints) Performing minimization step: 3125. Total energy = 5454.3959 kcal/mol (5447.1950 without restraints) Performing minimization step: 3126. Total energy = 5453.1960 kcal/mol (5445.9969 without restraints) Performing minimization step: 3127. Total energy = 5451.9966 kcal/mol (5444.7990 without restraints) Performing minimization step: 3128. Total energy = 5450.7982 kcal/mol (5443.6023 without restraints) Performing minimization step: 3129. Total energy = 5449.6012 kcal/mol (5442.4070 without restraints) Performing minimization step: 3130. Total energy = 5448.4052 kcal/mol (5441.2129 without restraints) Performing minimization step: 3131. Total energy = 5447.2103 kcal/mol (5440.0195 without restraints) Performing minimization step: 3132. Total energy = 5446.0164 kcal/mol (5438.8273 without restraints) Performing minimization step: 3133. Total energy = 5444.8233 kcal/mol (5437.6358 without restraints) Performing minimization step: 3134. Total energy = 5443.6315 kcal/mol (5436.4457 without restraints) Performing minimization step: 3135. Total energy = 5442.4409 kcal/mol (5435.2568 without restraints) Performing minimization step: 3136. Total energy = 5441.2514 kcal/mol (5434.0689 without restraints) Performing minimization step: 3137. Total energy = 5440.0627 kcal/mol (5432.8819 without restraints) Performing minimization step: 3138. Total energy = 5438.8750 kcal/mol (5431.6959 without restraints) Performing minimization step: 3139. Total energy = 5437.6883 kcal/mol (5430.5108 without restraints) Performing minimization step: 3140. Total energy = 5436.5028 kcal/mol (5429.3270 without restraints) Performing minimization step: 3141. Total energy = 5435.3181 kcal/mol (5428.1440 without restraints) Performing minimization step: 3142. Total energy = 5434.1349 kcal/mol (5426.9626 without restraints) Performing minimization step: 3143. Total energy = 5432.9531 kcal/mol (5425.7824 without restraints) Performing minimization step: 3144. Total energy = 5431.7717 kcal/mol (5424.6028 without restraints) Performing minimization step: 3145. Total energy = 5430.5915 kcal/mol (5423.4242 without restraints) Performing minimization step: 3146. Total energy = 5429.4121 kcal/mol (5422.2463 without restraints) Performing minimization step: 3147. Total energy = 5428.2338 kcal/mol (5421.0698 without restraints) Performing minimization step: 3148. Total energy = 5427.0566 kcal/mol (5419.8942 without restraints) Performing minimization step: 3149. Total energy = 5425.8806 kcal/mol (5418.7199 without restraints) Performing minimization step: 3150. Total energy = 5424.7055 kcal/mol (5417.5464 without restraints) Performing minimization step: 3151. Total energy = 5423.5315 kcal/mol (5416.3741 without restraints) Performing minimization step: 3152. Total energy = 5422.3582 kcal/mol (5415.2027 without restraints) Performing minimization step: 3153. Total energy = 5421.1862 kcal/mol (5414.0322 without restraints) Performing minimization step: 3154. Total energy = 5420.0153 kcal/mol (5412.8630 without restraints) Performing minimization step: 3155. Total energy = 5418.8456 kcal/mol (5411.6949 without restraints) Performing minimization step: 3156. Total energy = 5417.6763 kcal/mol (5410.5273 without restraints) Performing minimization step: 3157. Total energy = 5416.5081 kcal/mol (5409.3608 without restraints) Performing minimization step: 3158. Total energy = 5415.3408 kcal/mol (5408.1952 without restraints) Performing minimization step: 3159. Total energy = 5414.1745 kcal/mol (5407.0306 without restraints) Performing minimization step: 3160. Total energy = 5413.0093 kcal/mol (5405.8670 without restraints) Performing minimization step: 3161. Total energy = 5411.8451 kcal/mol (5404.7045 without restraints) Performing minimization step: 3162. Total energy = 5410.6828 kcal/mol (5403.5439 without restraints) Performing minimization step: 3163. Total energy = 5409.5202 kcal/mol (5402.3830 without restraints) Performing minimization step: 3164. Total energy = 5408.3588 kcal/mol (5401.2232 without restraints) Performing minimization step: 3165. Total energy = 5407.1986 kcal/mol (5400.0647 without restraints) Performing minimization step: 3166. Total energy = 5406.0398 kcal/mol (5398.9077 without restraints) Performing minimization step: 3167. Total energy = 5404.8820 kcal/mol (5397.7514 without restraints) Performing minimization step: 3168. Total energy = 5403.7252 kcal/mol (5396.5964 without restraints) Performing minimization step: 3169. Total energy = 5402.5694 kcal/mol (5395.4421 without restraints) Performing minimization step: 3170. Total energy = 5401.4142 kcal/mol (5394.2886 without restraints) Performing minimization step: 3171. Total energy = 5400.2599 kcal/mol (5393.1361 without restraints) Performing minimization step: 3172. Total energy = 5399.1071 kcal/mol (5391.9849 without restraints) Performing minimization step: 3173. Total energy = 5397.9550 kcal/mol (5390.8345 without restraints) Performing minimization step: 3174. Total energy = 5396.8040 kcal/mol (5389.6853 without restraints) Performing minimization step: 3175. Total energy = 5395.6539 kcal/mol (5388.5367 without restraints) Performing minimization step: 3176. Total energy = 5394.5043 kcal/mol (5387.3887 without restraints) Performing minimization step: 3177. Total energy = 5393.3563 kcal/mol (5386.2424 without restraints) Performing minimization step: 3178. Total energy = 5392.2089 kcal/mol (5385.0967 without restraints) Performing minimization step: 3179. Total energy = 5391.0626 kcal/mol (5383.9521 without restraints) Performing minimization step: 3180. Total energy = 5389.9173 kcal/mol (5382.8084 without restraints) Performing minimization step: 3181. Total energy = 5388.7729 kcal/mol (5381.6657 without restraints) Performing minimization step: 3182. Total energy = 5387.6296 kcal/mol (5380.5241 without restraints) Performing minimization step: 3183. Total energy = 5386.4873 kcal/mol (5379.3836 without restraints) Performing minimization step: 3184. Total energy = 5385.3461 kcal/mol (5378.2440 without restraints) Performing minimization step: 3185. Total energy = 5384.2054 kcal/mol (5377.1048 without restraints) Performing minimization step: 3186. Total energy = 5383.0661 kcal/mol (5375.9673 without restraints) Performing minimization step: 3187. Total energy = 5381.9276 kcal/mol (5374.8304 without restraints) Performing minimization step: 3188. Total energy = 5380.7904 kcal/mol (5373.6949 without restraints) Performing minimization step: 3189. Total energy = 5379.6539 kcal/mol (5372.5599 without restraints) Performing minimization step: 3190. Total energy = 5378.5184 kcal/mol (5371.4263 without restraints) Performing minimization step: 3191. Total energy = 5377.3837 kcal/mol (5370.2933 without restraints) Performing minimization step: 3192. Total energy = 5376.2501 kcal/mol (5369.1613 without restraints) Performing minimization step: 3193. Total energy = 5375.1175 kcal/mol (5368.0304 without restraints) Performing minimization step: 3194. Total energy = 5373.9860 kcal/mol (5366.9006 without restraints) Performing minimization step: 3195. Total energy = 5372.8556 kcal/mol (5365.7718 without restraints) Performing minimization step: 3196. Total energy = 5371.7257 kcal/mol (5364.6436 without restraints) Performing minimization step: 3197. Total energy = 5370.5968 kcal/mol (5363.5163 without restraints) Performing minimization step: 3198. Total energy = 5369.4689 kcal/mol (5362.3902 without restraints) Performing minimization step: 3199. Total energy = 5368.3419 kcal/mol (5361.2648 without restraints) Performing minimization step: 3200. Total energy = 5367.2159 kcal/mol (5360.1404 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 5366.0905 kcal/mol (5359.0167 without restraints) Performing minimization step: 3202. Total energy = 5364.9663 kcal/mol (5357.8942 without restraints) Performing minimization step: 3203. Total energy = 5363.8430 kcal/mol (5356.7725 without restraints) Performing minimization step: 3204. Total energy = 5362.7204 kcal/mol (5355.6516 without restraints) Performing minimization step: 3205. Total energy = 5361.5990 kcal/mol (5354.5319 without restraints) Performing minimization step: 3206. Total energy = 5360.4786 kcal/mol (5353.4133 without restraints) Performing minimization step: 3207. Total energy = 5359.3592 kcal/mol (5352.2954 without restraints) Performing minimization step: 3208. Total energy = 5358.2409 kcal/mol (5351.1788 without restraints) Performing minimization step: 3209. Total energy = 5357.1233 kcal/mol (5350.0629 without restraints) Performing minimization step: 3210. Total energy = 5356.0066 kcal/mol (5348.9478 without restraints) Performing minimization step: 3211. Total energy = 5354.8909 kcal/mol (5347.8338 without restraints) Performing minimization step: 3212. Total energy = 5353.7758 kcal/mol (5346.7204 without restraints) Performing minimization step: 3213. Total energy = 5352.6626 kcal/mol (5345.6088 without restraints) Performing minimization step: 3214. Total energy = 5351.5495 kcal/mol (5344.4975 without restraints) Performing minimization step: 3215. Total energy = 5350.4381 kcal/mol (5343.3877 without restraints) Performing minimization step: 3216. Total energy = 5349.3274 kcal/mol (5342.2787 without restraints) Performing minimization step: 3217. Total energy = 5348.2171 kcal/mol (5341.1700 without restraints) Performing minimization step: 3218. Total energy = 5347.1082 kcal/mol (5340.0628 without restraints) Performing minimization step: 3219. Total energy = 5345.9999 kcal/mol (5338.9562 without restraints) Performing minimization step: 3220. Total energy = 5344.8925 kcal/mol (5337.8504 without restraints) Performing minimization step: 3221. Total energy = 5343.7860 kcal/mol (5336.7456 without restraints) Performing minimization step: 3222. Total energy = 5342.6805 kcal/mol (5335.6418 without restraints) Performing minimization step: 3223. Total energy = 5341.5760 kcal/mol (5334.5389 without restraints) Performing minimization step: 3224. Total energy = 5340.4724 kcal/mol (5333.4370 without restraints) Performing minimization step: 3225. Total energy = 5339.3698 kcal/mol (5332.3361 without restraints) Performing minimization step: 3226. Total energy = 5338.2678 kcal/mol (5331.2357 without restraints) Performing minimization step: 3227. Total energy = 5337.1668 kcal/mol (5330.1363 without restraints) Performing minimization step: 3228. Total energy = 5336.0672 kcal/mol (5329.0386 without restraints) Performing minimization step: 3229. Total energy = 5334.9684 kcal/mol (5327.9413 without restraints) Performing minimization step: 3230. Total energy = 5333.8703 kcal/mol (5326.8449 without restraints) Performing minimization step: 3231. Total energy = 5332.7733 kcal/mol (5325.7495 without restraints) Performing minimization step: 3232. Total energy = 5331.6773 kcal/mol (5324.6552 without restraints) Performing minimization step: 3233. Total energy = 5330.5817 kcal/mol (5323.5612 without restraints) Performing minimization step: 3234. Total energy = 5329.4873 kcal/mol (5322.4686 without restraints) Performing minimization step: 3235. Total energy = 5328.3936 kcal/mol (5321.3765 without restraints) Performing minimization step: 3236. Total energy = 5327.3011 kcal/mol (5320.2856 without restraints) Performing minimization step: 3237. Total energy = 5326.2091 kcal/mol (5319.1953 without restraints) Performing minimization step: 3238. Total energy = 5325.1187 kcal/mol (5318.1066 without restraints) Performing minimization step: 3239. Total energy = 5324.0285 kcal/mol (5317.0180 without restraints) Performing minimization step: 3240. Total energy = 5322.9391 kcal/mol (5315.9303 without restraints) Performing minimization step: 3241. Total energy = 5321.8508 kcal/mol (5314.8437 without restraints) Performing minimization step: 3242. Total energy = 5320.7634 kcal/mol (5313.7579 without restraints) Performing minimization step: 3243. Total energy = 5319.6768 kcal/mol (5312.6730 without restraints) Performing minimization step: 3244. Total energy = 5318.5912 kcal/mol (5311.5891 without restraints) Performing minimization step: 3245. Total energy = 5317.5062 kcal/mol (5310.5057 without restraints) Performing minimization step: 3246. Total energy = 5316.4223 kcal/mol (5309.4235 without restraints) Performing minimization step: 3247. Total energy = 5315.3392 kcal/mol (5308.3420 without restraints) Performing minimization step: 3248. Total energy = 5314.2572 kcal/mol (5307.2617 without restraints) Performing minimization step: 3249. Total energy = 5313.1761 kcal/mol (5306.1823 without restraints) Performing minimization step: 3250. Total energy = 5312.0957 kcal/mol (5305.1035 without restraints) Performing minimization step: 3251. Total energy = 5311.0165 kcal/mol (5304.0261 without restraints) Performing minimization step: 3252. Total energy = 5309.9379 kcal/mol (5302.9490 without restraints) Performing minimization step: 3253. Total energy = 5308.8598 kcal/mol (5301.8726 without restraints) Performing minimization step: 3254. Total energy = 5307.7828 kcal/mol (5300.7973 without restraints) Performing minimization step: 3255. Total energy = 5306.7067 kcal/mol (5299.7229 without restraints) Performing minimization step: 3256. Total energy = 5305.6315 kcal/mol (5298.6492 without restraints) Performing minimization step: 3257. Total energy = 5304.5571 kcal/mol (5297.5765 without restraints) Performing minimization step: 3258. Total energy = 5303.4836 kcal/mol (5296.5047 without restraints) Performing minimization step: 3259. Total energy = 5302.4107 kcal/mol (5295.4334 without restraints) Performing minimization step: 3260. Total energy = 5301.3392 kcal/mol (5294.3639 without restraints) Performing minimization step: 3261. Total energy = 5300.2685 kcal/mol (5293.2946 without restraints) Performing minimization step: 3262. Total energy = 5299.1982 kcal/mol (5292.2259 without restraints) Performing minimization step: 3263. Total energy = 5298.1290 kcal/mol (5291.1584 without restraints) Performing minimization step: 3264. Total energy = 5297.0608 kcal/mol (5290.0919 without restraints) Performing minimization step: 3265. Total energy = 5295.9932 kcal/mol (5289.0258 without restraints) Performing minimization step: 3266. Total energy = 5294.9264 kcal/mol (5287.9607 without restraints) Performing minimization step: 3267. Total energy = 5293.8609 kcal/mol (5286.8970 without restraints) Performing minimization step: 3268. Total energy = 5292.7959 kcal/mol (5285.8336 without restraints) Performing minimization step: 3269. Total energy = 5291.7318 kcal/mol (5284.7711 without restraints) Performing minimization step: 3270. Total energy = 5290.6687 kcal/mol (5283.7097 without restraints) Performing minimization step: 3271. Total energy = 5289.6064 kcal/mol (5282.6493 without restraints) Performing minimization step: 3272. Total energy = 5288.5451 kcal/mol (5281.5894 without restraints) Performing minimization step: 3273. Total energy = 5287.4845 kcal/mol (5280.5305 without restraints) Performing minimization step: 3274. Total energy = 5286.4246 kcal/mol (5279.4722 without restraints) Performing minimization step: 3275. Total energy = 5285.3657 kcal/mol (5278.4150 without restraints) Performing minimization step: 3276. Total energy = 5284.3077 kcal/mol (5277.3588 without restraints) Performing minimization step: 3277. Total energy = 5283.2504 kcal/mol (5276.3030 without restraints) Performing minimization step: 3278. Total energy = 5282.1943 kcal/mol (5275.2486 without restraints) Performing minimization step: 3279. Total energy = 5281.1389 kcal/mol (5274.1949 without restraints) Performing minimization step: 3280. Total energy = 5280.0842 kcal/mol (5273.1418 without restraints) Performing minimization step: 3281. Total energy = 5279.0302 kcal/mol (5272.0894 without restraints) Performing minimization step: 3282. Total energy = 5277.9769 kcal/mol (5271.0378 without restraints) Performing minimization step: 3283. Total energy = 5276.9249 kcal/mol (5269.9875 without restraints) Performing minimization step: 3284. Total energy = 5275.8733 kcal/mol (5268.9375 without restraints) Performing minimization step: 3285. Total energy = 5274.8225 kcal/mol (5267.8884 without restraints) Performing minimization step: 3286. Total energy = 5273.7726 kcal/mol (5266.8401 without restraints) Performing minimization step: 3287. Total energy = 5272.7232 kcal/mol (5265.7924 without restraints) Performing minimization step: 3288. Total energy = 5271.6752 kcal/mol (5264.7460 without restraints) Performing minimization step: 3289. Total energy = 5270.6279 kcal/mol (5263.7004 without restraints) Performing minimization step: 3290. Total energy = 5269.5815 kcal/mol (5262.6556 without restraints) Performing minimization step: 3291. Total energy = 5268.5359 kcal/mol (5261.6119 without restraints) Performing minimization step: 3292. Total energy = 5267.4910 kcal/mol (5260.5687 without restraints) Performing minimization step: 3293. Total energy = 5266.4470 kcal/mol (5259.5260 without restraints) Performing minimization step: 3294. Total energy = 5265.4038 kcal/mol (5258.4845 without restraints) Performing minimization step: 3295. Total energy = 5264.3616 kcal/mol (5257.4439 without restraints) Performing minimization step: 3296. Total energy = 5263.3198 kcal/mol (5256.4038 without restraints) Performing minimization step: 3297. Total energy = 5262.2791 kcal/mol (5255.3650 without restraints) Performing minimization step: 3298. Total energy = 5261.2391 kcal/mol (5254.3265 without restraints) Performing minimization step: 3299. Total energy = 5260.2000 kcal/mol (5253.2890 without restraints) Performing minimization step: 3300. Total energy = 5259.1617 kcal/mol (5252.2523 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 5258.1246 kcal/mol (5251.2169 without restraints) Performing minimization step: 3302. Total energy = 5257.0877 kcal/mol (5250.1817 without restraints) Performing minimization step: 3303. Total energy = 5256.0520 kcal/mol (5249.1477 without restraints) Performing minimization step: 3304. Total energy = 5255.0168 kcal/mol (5248.1140 without restraints) Performing minimization step: 3305. Total energy = 5253.9831 kcal/mol (5247.0820 without restraints) Performing minimization step: 3306. Total energy = 5252.9493 kcal/mol (5246.0499 without restraints) Performing minimization step: 3307. Total energy = 5251.9164 kcal/mol (5245.0186 without restraints) Performing minimization step: 3308. Total energy = 5250.8845 kcal/mol (5243.9885 without restraints) Performing minimization step: 3309. Total energy = 5249.8534 kcal/mol (5242.9589 without restraints) Performing minimization step: 3310. Total energy = 5248.8228 kcal/mol (5241.9299 without restraints) Performing minimization step: 3311. Total energy = 5247.7934 kcal/mol (5240.9022 without restraints) Performing minimization step: 3312. Total energy = 5246.7646 kcal/mol (5239.8750 without restraints) Performing minimization step: 3313. Total energy = 5245.7366 kcal/mol (5238.8486 without restraints) Performing minimization step: 3314. Total energy = 5244.7092 kcal/mol (5237.8230 without restraints) Performing minimization step: 3315. Total energy = 5243.6823 kcal/mol (5236.7977 without restraints) Performing minimization step: 3316. Total energy = 5242.6565 kcal/mol (5235.7736 without restraints) Performing minimization step: 3317. Total energy = 5241.6316 kcal/mol (5234.7504 without restraints) Performing minimization step: 3318. Total energy = 5240.6074 kcal/mol (5233.7278 without restraints) Performing minimization step: 3319. Total energy = 5239.5840 kcal/mol (5232.7060 without restraints) Performing minimization step: 3320. Total energy = 5238.5613 kcal/mol (5231.6849 without restraints) Performing minimization step: 3321. Total energy = 5237.5396 kcal/mol (5230.6649 without restraints) Performing minimization step: 3322. Total energy = 5236.5180 kcal/mol (5229.6449 without restraints) Performing minimization step: 3323. Total energy = 5235.4979 kcal/mol (5228.6264 without restraints) Performing minimization step: 3324. Total energy = 5234.4786 kcal/mol (5227.6088 without restraints) Performing minimization step: 3325. Total energy = 5233.4598 kcal/mol (5226.5916 without restraints) Performing minimization step: 3326. Total energy = 5232.4414 kcal/mol (5225.5749 without restraints) Performing minimization step: 3327. Total energy = 5231.4239 kcal/mol (5224.5590 without restraints) Performing minimization step: 3328. Total energy = 5230.4074 kcal/mol (5223.5442 without restraints) Performing minimization step: 3329. Total energy = 5229.3912 kcal/mol (5222.5297 without restraints) Performing minimization step: 3330. Total energy = 5228.3765 kcal/mol (5221.5166 without restraints) Performing minimization step: 3331. Total energy = 5227.3623 kcal/mol (5220.5041 without restraints) Performing minimization step: 3332. Total energy = 5226.3488 kcal/mol (5219.4922 without restraints) Performing minimization step: 3333. Total energy = 5225.3365 kcal/mol (5218.4815 without restraints) Performing minimization step: 3334. Total energy = 5224.3245 kcal/mol (5217.4711 without restraints) Performing minimization step: 3335. Total energy = 5223.3131 kcal/mol (5216.4615 without restraints) Performing minimization step: 3336. Total energy = 5222.3026 kcal/mol (5215.4526 without restraints) Performing minimization step: 3337. Total energy = 5221.2930 kcal/mol (5214.4445 without restraints) Performing minimization step: 3338. Total energy = 5220.2840 kcal/mol (5213.4372 without restraints) Performing minimization step: 3339. Total energy = 5219.2757 kcal/mol (5212.4306 without restraints) Performing minimization step: 3340. Total energy = 5218.2682 kcal/mol (5211.4247 without restraints) Performing minimization step: 3341. Total energy = 5217.2619 kcal/mol (5210.4200 without restraints) Performing minimization step: 3342. Total energy = 5216.2553 kcal/mol (5209.4152 without restraints) Performing minimization step: 3343. Total energy = 5215.2502 kcal/mol (5208.4116 without restraints) Performing minimization step: 3344. Total energy = 5214.2459 kcal/mol (5207.4090 without restraints) Performing minimization step: 3345. Total energy = 5213.2425 kcal/mol (5206.4072 without restraints) Performing minimization step: 3346. Total energy = 5212.2395 kcal/mol (5205.4058 without restraints) Performing minimization step: 3347. Total energy = 5211.2374 kcal/mol (5204.4053 without restraints) Performing minimization step: 3348. Total energy = 5210.2360 kcal/mol (5203.4056 without restraints) Performing minimization step: 3349. Total energy = 5209.2356 kcal/mol (5202.4068 without restraints) Performing minimization step: 3350. Total energy = 5208.2358 kcal/mol (5201.4087 without restraints) Performing minimization step: 3351. Total energy = 5207.2367 kcal/mol (5200.4112 without restraints) Performing minimization step: 3352. Total energy = 5206.2383 kcal/mol (5199.4146 without restraints) Performing minimization step: 3353. Total energy = 5205.2405 kcal/mol (5198.4184 without restraints) Performing minimization step: 3354. Total energy = 5204.2436 kcal/mol (5197.4231 without restraints) Performing minimization step: 3355. Total energy = 5203.2480 kcal/mol (5196.4291 without restraints) Performing minimization step: 3356. Total energy = 5202.2527 kcal/mol (5195.4354 without restraints) Performing minimization step: 3357. Total energy = 5201.2579 kcal/mol (5194.4422 without restraints) Performing minimization step: 3358. Total energy = 5200.2641 kcal/mol (5193.4501 without restraints) Performing minimization step: 3359. Total energy = 5199.2707 kcal/mol (5192.4584 without restraints) Performing minimization step: 3360. Total energy = 5198.2780 kcal/mol (5191.4673 without restraints) Performing minimization step: 3361. Total energy = 5197.2861 kcal/mol (5190.4770 without restraints) Performing minimization step: 3362. Total energy = 5196.2947 kcal/mol (5189.4872 without restraints) Performing minimization step: 3363. Total energy = 5195.3044 kcal/mol (5188.4985 without restraints) Performing minimization step: 3364. Total energy = 5194.3146 kcal/mol (5187.5104 without restraints) Performing minimization step: 3365. Total energy = 5193.3254 kcal/mol (5186.5229 without restraints) Performing minimization step: 3366. Total energy = 5192.3373 kcal/mol (5185.5364 without restraints) Performing minimization step: 3367. Total energy = 5191.3496 kcal/mol (5184.5504 without restraints) Performing minimization step: 3368. Total energy = 5190.3630 kcal/mol (5183.5653 without restraints) Performing minimization step: 3369. Total energy = 5189.3773 kcal/mol (5182.5814 without restraints) Performing minimization step: 3370. Total energy = 5188.3920 kcal/mol (5181.5977 without restraints) Performing minimization step: 3371. Total energy = 5187.4072 kcal/mol (5180.6145 without restraints) Performing minimization step: 3372. Total energy = 5186.4232 kcal/mol (5179.6321 without restraints) Performing minimization step: 3373. Total energy = 5185.4398 kcal/mol (5178.6503 without restraints) Performing minimization step: 3374. Total energy = 5184.4572 kcal/mol (5177.6693 without restraints) Performing minimization step: 3375. Total energy = 5183.4752 kcal/mol (5176.6891 without restraints) Performing minimization step: 3376. Total energy = 5182.4943 kcal/mol (5175.7100 without restraints) Performing minimization step: 3377. Total energy = 5181.5140 kcal/mol (5174.7310 without restraints) Performing minimization step: 3378. Total energy = 5180.5341 kcal/mol (5173.7528 without restraints) Performing minimization step: 3379. Total energy = 5179.5550 kcal/mol (5172.7753 without restraints) Performing minimization step: 3380. Total energy = 5178.5763 kcal/mol (5171.7983 without restraints) Performing minimization step: 3381. Total energy = 5177.5987 kcal/mol (5170.8225 without restraints) Performing minimization step: 3382. Total energy = 5176.6218 kcal/mol (5169.8471 without restraints) Performing minimization step: 3383. Total energy = 5175.6456 kcal/mol (5168.8725 without restraints) Performing minimization step: 3384. Total energy = 5174.6700 kcal/mol (5167.8985 without restraints) Performing minimization step: 3385. Total energy = 5173.6951 kcal/mol (5166.9252 without restraints) Performing minimization step: 3386. Total energy = 5172.7208 kcal/mol (5165.9526 without restraints) Performing minimization step: 3387. Total energy = 5171.7475 kcal/mol (5164.9810 without restraints) Performing minimization step: 3388. Total energy = 5170.7750 kcal/mol (5164.0100 without restraints) Performing minimization step: 3389. Total energy = 5169.8028 kcal/mol (5163.0395 without restraints) Performing minimization step: 3390. Total energy = 5168.8314 kcal/mol (5162.0696 without restraints) Performing minimization step: 3391. Total energy = 5167.8609 kcal/mol (5161.1008 without restraints) Performing minimization step: 3392. Total energy = 5166.8908 kcal/mol (5160.1323 without restraints) Performing minimization step: 3393. Total energy = 5165.9218 kcal/mol (5159.1650 without restraints) Performing minimization step: 3394. Total energy = 5164.9535 kcal/mol (5158.1983 without restraints) Performing minimization step: 3395. Total energy = 5163.9851 kcal/mol (5157.2314 without restraints) Performing minimization step: 3396. Total energy = 5163.0178 kcal/mol (5156.2658 without restraints) Performing minimization step: 3397. Total energy = 5162.0511 kcal/mol (5155.3007 without restraints) Performing minimization step: 3398. Total energy = 5161.0851 kcal/mol (5154.3363 without restraints) Performing minimization step: 3399. Total energy = 5160.1204 kcal/mol (5153.3733 without restraints) Performing minimization step: 3400. Total energy = 5159.1561 kcal/mol (5152.4108 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 5158.1925 kcal/mol (5151.4487 without restraints) Performing minimization step: 3402. Total energy = 5157.2294 kcal/mol (5150.4872 without restraints) Performing minimization step: 3403. Total energy = 5156.2672 kcal/mol (5149.5267 without restraints) Performing minimization step: 3404. Total energy = 5155.3055 kcal/mol (5148.5665 without restraints) Performing minimization step: 3405. Total energy = 5154.3444 kcal/mol (5147.6071 without restraints) Performing minimization step: 3406. Total energy = 5153.3838 kcal/mol (5146.6481 without restraints) Performing minimization step: 3407. Total energy = 5152.4236 kcal/mol (5145.6895 without restraints) Performing minimization step: 3408. Total energy = 5151.4643 kcal/mol (5144.7319 without restraints) Performing minimization step: 3409. Total energy = 5150.5059 kcal/mol (5143.7751 without restraints) Performing minimization step: 3410. Total energy = 5149.5481 kcal/mol (5142.8188 without restraints) Performing minimization step: 3411. Total energy = 5148.5909 kcal/mol (5141.8633 without restraints) Performing minimization step: 3412. Total energy = 5147.6341 kcal/mol (5140.9080 without restraints) Performing minimization step: 3413. Total energy = 5146.6781 kcal/mol (5139.9537 without restraints) Performing minimization step: 3414. Total energy = 5145.7233 kcal/mol (5139.0006 without restraints) Performing minimization step: 3415. Total energy = 5144.7687 kcal/mol (5138.0476 without restraints) Performing minimization step: 3416. Total energy = 5143.8152 kcal/mol (5137.0957 without restraints) Performing minimization step: 3417. Total energy = 5142.8622 kcal/mol (5136.1443 without restraints) Performing minimization step: 3418. Total energy = 5141.9094 kcal/mol (5135.1931 without restraints) Performing minimization step: 3419. Total energy = 5140.9578 kcal/mol (5134.2432 without restraints) Performing minimization step: 3420. Total energy = 5140.0069 kcal/mol (5133.2939 without restraints) Performing minimization step: 3421. Total energy = 5139.0560 kcal/mol (5132.3444 without restraints) Performing minimization step: 3422. Total energy = 5138.1062 kcal/mol (5131.3964 without restraints) Performing minimization step: 3423. Total energy = 5137.1573 kcal/mol (5130.4492 without restraints) Performing minimization step: 3424. Total energy = 5136.2088 kcal/mol (5129.5022 without restraints) Performing minimization step: 3425. Total energy = 5135.2607 kcal/mol (5128.5558 without restraints) Performing minimization step: 3426. Total energy = 5134.3134 kcal/mol (5127.6102 without restraints) Performing minimization step: 3427. Total energy = 5133.3666 kcal/mol (5126.6650 without restraints) Performing minimization step: 3428. Total energy = 5132.4207 kcal/mol (5125.7207 without restraints) Performing minimization step: 3429. Total energy = 5131.4761 kcal/mol (5124.7776 without restraints) Performing minimization step: 3430. Total energy = 5130.5314 kcal/mol (5123.8346 without restraints) Performing minimization step: 3431. Total energy = 5129.5872 kcal/mol (5122.8920 without restraints) Performing minimization step: 3432. Total energy = 5128.6441 kcal/mol (5121.9505 without restraints) Performing minimization step: 3433. Total energy = 5127.7012 kcal/mol (5121.0092 without restraints) Performing minimization step: 3434. Total energy = 5126.7590 kcal/mol (5120.0686 without restraints) Performing minimization step: 3435. Total energy = 5125.8172 kcal/mol (5119.1284 without restraints) Performing minimization step: 3436. Total energy = 5124.8762 kcal/mol (5118.1891 without restraints) Performing minimization step: 3437. Total energy = 5123.9359 kcal/mol (5117.2504 without restraints) Performing minimization step: 3438. Total energy = 5122.9963 kcal/mol (5116.3124 without restraints) Performing minimization step: 3439. Total energy = 5122.0577 kcal/mol (5115.3754 without restraints) Performing minimization step: 3440. Total energy = 5121.1192 kcal/mol (5114.4384 without restraints) Performing minimization step: 3441. Total energy = 5120.1814 kcal/mol (5113.5023 without restraints) Performing minimization step: 3442. Total energy = 5119.2442 kcal/mol (5112.5668 without restraints) Performing minimization step: 3443. Total energy = 5118.3083 kcal/mol (5111.6325 without restraints) Performing minimization step: 3444. Total energy = 5117.3725 kcal/mol (5110.6982 without restraints) Performing minimization step: 3445. Total energy = 5116.4372 kcal/mol (5109.7645 without restraints) Performing minimization step: 3446. Total energy = 5115.5027 kcal/mol (5108.8317 without restraints) Performing minimization step: 3447. Total energy = 5114.5687 kcal/mol (5107.8993 without restraints) Performing minimization step: 3448. Total energy = 5113.6352 kcal/mol (5106.9675 without restraints) Performing minimization step: 3449. Total energy = 5112.7023 kcal/mol (5106.0361 without restraints) Performing minimization step: 3450. Total energy = 5111.7704 kcal/mol (5105.1059 without restraints) Performing minimization step: 3451. Total energy = 5110.8388 kcal/mol (5104.1759 without restraints) Performing minimization step: 3452. Total energy = 5109.9085 kcal/mol (5103.2472 without restraints) Performing minimization step: 3453. Total energy = 5108.9787 kcal/mol (5102.3191 without restraints) Performing minimization step: 3454. Total energy = 5108.0493 kcal/mol (5101.3912 without restraints) Performing minimization step: 3455. Total energy = 5107.1205 kcal/mol (5100.4639 without restraints) Performing minimization step: 3456. Total energy = 5106.1923 kcal/mol (5099.5376 without restraints) Performing minimization step: 3457. Total energy = 5105.2646 kcal/mol (5098.6113 without restraints) Performing minimization step: 3458. Total energy = 5104.3374 kcal/mol (5097.6857 without restraints) Performing minimization step: 3459. Total energy = 5103.4107 kcal/mol (5096.7605 without restraints) Performing minimization step: 3460. Total energy = 5102.4849 kcal/mol (5095.8365 without restraints) Performing minimization step: 3461. Total energy = 5101.5594 kcal/mol (5094.9125 without restraints) Performing minimization step: 3462. Total energy = 5100.6346 kcal/mol (5093.9894 without restraints) Performing minimization step: 3463. Total energy = 5099.7105 kcal/mol (5093.0668 without restraints) Performing minimization step: 3464. Total energy = 5098.7870 kcal/mol (5092.1450 without restraints) Performing minimization step: 3465. Total energy = 5097.8645 kcal/mol (5091.2240 without restraints) Performing minimization step: 3466. Total energy = 5096.9421 kcal/mol (5090.3033 without restraints) Performing minimization step: 3467. Total energy = 5096.0207 kcal/mol (5089.3834 without restraints) Performing minimization step: 3468. Total energy = 5095.0996 kcal/mol (5088.4639 without restraints) Performing minimization step: 3469. Total energy = 5094.1793 kcal/mol (5087.5453 without restraints) Performing minimization step: 3470. Total energy = 5093.2597 kcal/mol (5086.6274 without restraints) Performing minimization step: 3471. Total energy = 5092.3407 kcal/mol (5085.7099 without restraints) Performing minimization step: 3472. Total energy = 5091.4222 kcal/mol (5084.7929 without restraints) Performing minimization step: 3473. Total energy = 5090.5042 kcal/mol (5083.8766 without restraints) Performing minimization step: 3474. Total energy = 5089.5871 kcal/mol (5082.9613 without restraints) Performing minimization step: 3475. Total energy = 5088.6704 kcal/mol (5082.0460 without restraints) Performing minimization step: 3476. Total energy = 5087.7542 kcal/mol (5081.1314 without restraints) Performing minimization step: 3477. Total energy = 5086.8383 kcal/mol (5080.2171 without restraints) Performing minimization step: 3478. Total energy = 5085.9233 kcal/mol (5079.3039 without restraints) Performing minimization step: 3479. Total energy = 5085.0090 kcal/mol (5078.3910 without restraints) Performing minimization step: 3480. Total energy = 5084.0951 kcal/mol (5077.4787 without restraints) Performing minimization step: 3481. Total energy = 5083.1819 kcal/mol (5076.5672 without restraints) Performing minimization step: 3482. Total energy = 5082.2693 kcal/mol (5075.6561 without restraints) Performing minimization step: 3483. Total energy = 5081.3572 kcal/mol (5074.7456 without restraints) Performing minimization step: 3484. Total energy = 5080.4459 kcal/mol (5073.8361 without restraints) Performing minimization step: 3485. Total energy = 5079.5355 kcal/mol (5072.9272 without restraints) Performing minimization step: 3486. Total energy = 5078.6253 kcal/mol (5072.0187 without restraints) Performing minimization step: 3487. Total energy = 5077.7160 kcal/mol (5071.1110 without restraints) Performing minimization step: 3488. Total energy = 5076.8072 kcal/mol (5070.2036 without restraints) Performing minimization step: 3489. Total energy = 5075.8986 kcal/mol (5069.2967 without restraints) Performing minimization step: 3490. Total energy = 5074.9905 kcal/mol (5068.3901 without restraints) Performing minimization step: 3491. Total energy = 5074.0833 kcal/mol (5067.4846 without restraints) Performing minimization step: 3492. Total energy = 5073.1768 kcal/mol (5066.5796 without restraints) Performing minimization step: 3493. Total energy = 5072.2705 kcal/mol (5065.6749 without restraints) Performing minimization step: 3494. Total energy = 5071.3657 kcal/mol (5064.7717 without restraints) Performing minimization step: 3495. Total energy = 5070.4608 kcal/mol (5063.8684 without restraints) Performing minimization step: 3496. Total energy = 5069.5566 kcal/mol (5062.9660 without restraints) Performing minimization step: 3497. Total energy = 5068.6529 kcal/mol (5062.0636 without restraints) Performing minimization step: 3498. Total energy = 5067.7501 kcal/mol (5061.1624 without restraints) Performing minimization step: 3499. Total energy = 5066.8474 kcal/mol (5060.2613 without restraints) Performing minimization step: 3500. Total energy = 5065.9451 kcal/mol (5059.3607 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 5065.0438 kcal/mol (5058.4610 without restraints) Performing minimization step: 3502. Total energy = 5064.1431 kcal/mol (5057.5618 without restraints) Performing minimization step: 3503. Total energy = 5063.2426 kcal/mol (5056.6629 without restraints) Performing minimization step: 3504. Total energy = 5062.3427 kcal/mol (5055.7646 without restraints) Performing minimization step: 3505. Total energy = 5061.4438 kcal/mol (5054.8673 without restraints) Performing minimization step: 3506. Total energy = 5060.5449 kcal/mol (5053.9701 without restraints) Performing minimization step: 3507. Total energy = 5059.6467 kcal/mol (5053.0734 without restraints) Performing minimization step: 3508. Total energy = 5058.7488 kcal/mol (5052.1770 without restraints) Performing minimization step: 3509. Total energy = 5057.8516 kcal/mol (5051.2815 without restraints) Performing minimization step: 3510. Total energy = 5056.9551 kcal/mol (5050.3866 without restraints) Performing minimization step: 3511. Total energy = 5056.0591 kcal/mol (5049.4922 without restraints) Performing minimization step: 3512. Total energy = 5055.1638 kcal/mol (5048.5984 without restraints) Performing minimization step: 3513. Total energy = 5054.2694 kcal/mol (5047.7059 without restraints) Performing minimization step: 3514. Total energy = 5053.3755 kcal/mol (5046.8134 without restraints) Performing minimization step: 3515. Total energy = 5052.4818 kcal/mol (5045.9212 without restraints) Performing minimization step: 3516. Total energy = 5051.5886 kcal/mol (5045.0296 without restraints) Performing minimization step: 3517. Total energy = 5050.6960 kcal/mol (5044.1386 without restraints) Performing minimization step: 3518. Total energy = 5049.8040 kcal/mol (5043.2482 without restraints) Performing minimization step: 3519. Total energy = 5048.9130 kcal/mol (5042.3588 without restraints) Performing minimization step: 3520. Total energy = 5048.0223 kcal/mol (5041.4696 without restraints) Performing minimization step: 3521. Total energy = 5047.1317 kcal/mol (5040.5806 without restraints) Performing minimization step: 3522. Total energy = 5046.2419 kcal/mol (5039.6924 without restraints) Performing minimization step: 3523. Total energy = 5045.3531 kcal/mol (5038.8053 without restraints) Performing minimization step: 3524. Total energy = 5044.4645 kcal/mol (5037.9182 without restraints) Performing minimization step: 3525. Total energy = 5043.5763 kcal/mol (5037.0316 without restraints) Performing minimization step: 3526. Total energy = 5042.6887 kcal/mol (5036.1456 without restraints) Performing minimization step: 3527. Total energy = 5041.8017 kcal/mol (5035.2602 without restraints) Performing minimization step: 3528. Total energy = 5040.9152 kcal/mol (5034.3753 without restraints) Performing minimization step: 3529. Total energy = 5040.0293 kcal/mol (5033.4909 without restraints) Performing minimization step: 3530. Total energy = 5039.1436 kcal/mol (5032.6069 without restraints) Performing minimization step: 3531. Total energy = 5038.2590 kcal/mol (5031.7238 without restraints) Performing minimization step: 3532. Total energy = 5037.3748 kcal/mol (5030.8411 without restraints) Performing minimization step: 3533. Total energy = 5036.4909 kcal/mol (5029.9589 without restraints) Performing minimization step: 3534. Total energy = 5035.6080 kcal/mol (5029.0776 without restraints) Performing minimization step: 3535. Total energy = 5034.7253 kcal/mol (5028.1962 without restraints) Performing minimization step: 3536. Total energy = 5033.8429 kcal/mol (5027.3156 without restraints) Performing minimization step: 3537. Total energy = 5032.9612 kcal/mol (5026.4354 without restraints) Performing minimization step: 3538. Total energy = 5032.0801 kcal/mol (5025.5561 without restraints) Performing minimization step: 3539. Total energy = 5031.1998 kcal/mol (5024.6773 without restraints) Performing minimization step: 3540. Total energy = 5030.3199 kcal/mol (5023.7989 without restraints) Performing minimization step: 3541. Total energy = 5029.4405 kcal/mol (5022.9211 without restraints) Performing minimization step: 3542. Total energy = 5028.5617 kcal/mol (5022.0440 without restraints) Performing minimization step: 3543. Total energy = 5027.6835 kcal/mol (5021.1673 without restraints) Performing minimization step: 3544. Total energy = 5026.8058 kcal/mol (5020.2913 without restraints) Performing minimization step: 3545. Total energy = 5025.9288 kcal/mol (5019.4158 without restraints) Performing minimization step: 3546. Total energy = 5025.0521 kcal/mol (5018.5406 without restraints) Performing minimization step: 3547. Total energy = 5024.1758 kcal/mol (5017.6659 without restraints) Performing minimization step: 3548. Total energy = 5023.3002 kcal/mol (5016.7918 without restraints) Performing minimization step: 3549. Total energy = 5022.4251 kcal/mol (5015.9183 without restraints) Performing minimization step: 3550. Total energy = 5021.5503 kcal/mol (5015.0451 without restraints) Performing minimization step: 3551. Total energy = 5020.6762 kcal/mol (5014.1726 without restraints) Performing minimization step: 3552. Total energy = 5019.8029 kcal/mol (5013.3009 without restraints) Performing minimization step: 3553. Total energy = 5018.9301 kcal/mol (5012.4297 without restraints) Performing minimization step: 3554. Total energy = 5018.0575 kcal/mol (5011.5586 without restraints) Performing minimization step: 3555. Total energy = 5017.1857 kcal/mol (5010.6884 without restraints) Performing minimization step: 3556. Total energy = 5016.3147 kcal/mol (5009.8191 without restraints) Performing minimization step: 3557. Total energy = 5015.4446 kcal/mol (5008.9505 without restraints) Performing minimization step: 3558. Total energy = 5014.5740 kcal/mol (5008.0814 without restraints) Performing minimization step: 3559. Total energy = 5013.7041 kcal/mol (5007.2131 without restraints) Performing minimization step: 3560. Total energy = 5012.8348 kcal/mol (5006.3453 without restraints) Performing minimization step: 3561. Total energy = 5011.9667 kcal/mol (5005.4789 without restraints) Performing minimization step: 3562. Total energy = 5011.0986 kcal/mol (5004.6123 without restraints) Performing minimization step: 3563. Total energy = 5010.2313 kcal/mol (5003.7466 without restraints) Performing minimization step: 3564. Total energy = 5009.3642 kcal/mol (5002.8810 without restraints) Performing minimization step: 3565. Total energy = 5008.4974 kcal/mol (5002.0159 without restraints) Performing minimization step: 3566. Total energy = 5007.6312 kcal/mol (5001.1512 without restraints) Performing minimization step: 3567. Total energy = 5006.7655 kcal/mol (5000.2871 without restraints) Performing minimization step: 3568. Total energy = 5005.9005 kcal/mol (4999.4236 without restraints) Performing minimization step: 3569. Total energy = 5005.0357 kcal/mol (4998.5603 without restraints) Performing minimization step: 3570. Total energy = 5004.1717 kcal/mol (4997.6981 without restraints) Performing minimization step: 3571. Total energy = 5003.3085 kcal/mol (4996.8364 without restraints) Performing minimization step: 3572. Total energy = 5002.4454 kcal/mol (4995.9748 without restraints) Performing minimization step: 3573. Total energy = 5001.5829 kcal/mol (4995.1138 without restraints) Performing minimization step: 3574. Total energy = 5000.7208 kcal/mol (4994.2533 without restraints) Performing minimization step: 3575. Total energy = 4999.8592 kcal/mol (4993.3933 without restraints) Performing minimization step: 3576. Total energy = 4998.9982 kcal/mol (4992.5339 without restraints) Performing minimization step: 3577. Total energy = 4998.1378 kcal/mol (4991.6751 without restraints) Performing minimization step: 3578. Total energy = 4997.2780 kcal/mol (4990.8168 without restraints) Performing minimization step: 3579. Total energy = 4996.4186 kcal/mol (4989.9590 without restraints) Performing minimization step: 3580. Total energy = 4995.5595 kcal/mol (4989.1013 without restraints) Performing minimization step: 3581. Total energy = 4994.7003 kcal/mol (4988.2437 without restraints) Performing minimization step: 3582. Total energy = 4993.8422 kcal/mol (4987.3873 without restraints) Performing minimization step: 3583. Total energy = 4992.9846 kcal/mol (4986.5313 without restraints) Performing minimization step: 3584. Total energy = 4992.1279 kcal/mol (4985.6761 without restraints) Performing minimization step: 3585. Total energy = 4991.2722 kcal/mol (4984.8220 without restraints) Performing minimization step: 3586. Total energy = 4990.4160 kcal/mol (4983.9673 without restraints) Performing minimization step: 3587. Total energy = 4989.5608 kcal/mol (4983.1137 without restraints) Performing minimization step: 3588. Total energy = 4988.7058 kcal/mol (4982.2603 without restraints) Performing minimization step: 3589. Total energy = 4987.8513 kcal/mol (4981.4073 without restraints) Performing minimization step: 3590. Total energy = 4986.9973 kcal/mol (4980.5549 without restraints) Performing minimization step: 3591. Total energy = 4986.1440 kcal/mol (4979.7031 without restraints) Performing minimization step: 3592. Total energy = 4985.2909 kcal/mol (4978.8516 without restraints) Performing minimization step: 3593. Total energy = 4984.4383 kcal/mol (4978.0006 without restraints) Performing minimization step: 3594. Total energy = 4983.5865 kcal/mol (4977.1503 without restraints) Performing minimization step: 3595. Total energy = 4982.7348 kcal/mol (4976.3002 without restraints) Performing minimization step: 3596. Total energy = 4981.8841 kcal/mol (4975.4511 without restraints) Performing minimization step: 3597. Total energy = 4981.0335 kcal/mol (4974.6020 without restraints) Performing minimization step: 3598. Total energy = 4980.1835 kcal/mol (4973.7535 without restraints) Performing minimization step: 3599. Total energy = 4979.3344 kcal/mol (4972.9060 without restraints) Performing minimization step: 3600. Total energy = 4978.4855 kcal/mol (4972.0587 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 4977.6369 kcal/mol (4971.2116 without restraints) Performing minimization step: 3602. Total energy = 4976.7891 kcal/mol (4970.3656 without restraints) Performing minimization step: 3603. Total energy = 4975.9418 kcal/mol (4969.5196 without restraints) Performing minimization step: 3604. Total energy = 4975.0948 kcal/mol (4968.6742 without restraints) Performing minimization step: 3605. Total energy = 4974.2484 kcal/mol (4967.8294 without restraints) Performing minimization step: 3606. Total energy = 4973.4028 kcal/mol (4966.9853 without restraints) Performing minimization step: 3607. Total energy = 4972.5574 kcal/mol (4966.1414 without restraints) Performing minimization step: 3608. Total energy = 4971.7123 kcal/mol (4965.2979 without restraints) Performing minimization step: 3609. Total energy = 4970.8676 kcal/mol (4964.4548 without restraints) Performing minimization step: 3610. Total energy = 4970.0236 kcal/mol (4963.6123 without restraints) Performing minimization step: 3611. Total energy = 4969.1801 kcal/mol (4962.7704 without restraints) Performing minimization step: 3612. Total energy = 4968.3368 kcal/mol (4961.9286 without restraints) Performing minimization step: 3613. Total energy = 4967.4940 kcal/mol (4961.0874 without restraints) Performing minimization step: 3614. Total energy = 4966.6520 kcal/mol (4960.2470 without restraints) Performing minimization step: 3615. Total energy = 4965.8107 kcal/mol (4959.4072 without restraints) Performing minimization step: 3616. Total energy = 4964.9696 kcal/mol (4958.5677 without restraints) Performing minimization step: 3617. Total energy = 4964.1288 kcal/mol (4957.7284 without restraints) Performing minimization step: 3618. Total energy = 4963.2885 kcal/mol (4956.8896 without restraints) Performing minimization step: 3619. Total energy = 4962.4484 kcal/mol (4956.0510 without restraints) Performing minimization step: 3620. Total energy = 4961.6088 kcal/mol (4955.2131 without restraints) Performing minimization step: 3621. Total energy = 4960.7699 kcal/mol (4954.3757 without restraints) Performing minimization step: 3622. Total energy = 4959.9315 kcal/mol (4953.5388 without restraints) Performing minimization step: 3623. Total energy = 4959.0938 kcal/mol (4952.7026 without restraints) Performing minimization step: 3624. Total energy = 4958.2569 kcal/mol (4951.8673 without restraints) Performing minimization step: 3625. Total energy = 4957.4200 kcal/mol (4951.0320 without restraints) Performing minimization step: 3626. Total energy = 4956.5835 kcal/mol (4950.1970 without restraints) Performing minimization step: 3627. Total energy = 4955.7474 kcal/mol (4949.3625 without restraints) Performing minimization step: 3628. Total energy = 4954.9122 kcal/mol (4948.5288 without restraints) Performing minimization step: 3629. Total energy = 4954.0771 kcal/mol (4947.6954 without restraints) Performing minimization step: 3630. Total energy = 4953.2425 kcal/mol (4946.8622 without restraints) Performing minimization step: 3631. Total energy = 4952.4084 kcal/mol (4946.0297 without restraints) Performing minimization step: 3632. Total energy = 4951.5750 kcal/mol (4945.1978 without restraints) Performing minimization step: 3633. Total energy = 4950.7419 kcal/mol (4944.3663 without restraints) Performing minimization step: 3634. Total energy = 4949.9094 kcal/mol (4943.5353 without restraints) Performing minimization step: 3635. Total energy = 4949.0770 kcal/mol (4942.7044 without restraints) Performing minimization step: 3636. Total energy = 4948.2453 kcal/mol (4941.8743 without restraints) Performing minimization step: 3637. Total energy = 4947.4143 kcal/mol (4941.0449 without restraints) Performing minimization step: 3638. Total energy = 4946.5835 kcal/mol (4940.2157 without restraints) Performing minimization step: 3639. Total energy = 4945.7536 kcal/mol (4939.3872 without restraints) Performing minimization step: 3640. Total energy = 4944.9236 kcal/mol (4938.5587 without restraints) Performing minimization step: 3641. Total energy = 4944.0938 kcal/mol (4937.7305 without restraints) Performing minimization step: 3642. Total energy = 4943.2647 kcal/mol (4936.9029 without restraints) Performing minimization step: 3643. Total energy = 4942.4365 kcal/mol (4936.0763 without restraints) Performing minimization step: 3644. Total energy = 4941.6083 kcal/mol (4935.2496 without restraints) Performing minimization step: 3645. Total energy = 4940.7808 kcal/mol (4934.4239 without restraints) Performing minimization step: 3646. Total energy = 4939.9538 kcal/mol (4933.5982 without restraints) Performing minimization step: 3647. Total energy = 4939.1271 kcal/mol (4932.7730 without restraints) Performing minimization step: 3648. Total energy = 4938.3007 kcal/mol (4931.9482 without restraints) Performing minimization step: 3649. Total energy = 4937.4753 kcal/mol (4931.1243 without restraints) Performing minimization step: 3650. Total energy = 4936.6499 kcal/mol (4930.3004 without restraints) Performing minimization step: 3651. Total energy = 4935.8251 kcal/mol (4929.4771 without restraints) Performing minimization step: 3652. Total energy = 4935.0005 kcal/mol (4928.6542 without restraints) Performing minimization step: 3653. Total energy = 4934.1767 kcal/mol (4927.8319 without restraints) Performing minimization step: 3654. Total energy = 4933.3532 kcal/mol (4927.0099 without restraints) Performing minimization step: 3655. Total energy = 4932.5302 kcal/mol (4926.1887 without restraints) Performing minimization step: 3656. Total energy = 4931.7076 kcal/mol (4925.3673 without restraints) Performing minimization step: 3657. Total energy = 4930.8855 kcal/mol (4924.5469 without restraints) Performing minimization step: 3658. Total energy = 4930.0638 kcal/mol (4923.7266 without restraints) Performing minimization step: 3659. Total energy = 4929.2424 kcal/mol (4922.9068 without restraints) Performing minimization step: 3660. Total energy = 4928.4215 kcal/mol (4922.0874 without restraints) Performing minimization step: 3661. Total energy = 4927.6013 kcal/mol (4921.2687 without restraints) Performing minimization step: 3662. Total energy = 4926.7809 kcal/mol (4920.4498 without restraints) Performing minimization step: 3663. Total energy = 4925.9611 kcal/mol (4919.6316 without restraints) Performing minimization step: 3664. Total energy = 4925.1420 kcal/mol (4918.8141 without restraints) Performing minimization step: 3665. Total energy = 4924.3233 kcal/mol (4917.9968 without restraints) Performing minimization step: 3666. Total energy = 4923.5051 kcal/mol (4917.1802 without restraints) Performing minimization step: 3667. Total energy = 4922.6871 kcal/mol (4916.3638 without restraints) Performing minimization step: 3668. Total energy = 4921.8698 kcal/mol (4915.5480 without restraints) Performing minimization step: 3669. Total energy = 4921.0533 kcal/mol (4914.7331 without restraints) Performing minimization step: 3670. Total energy = 4920.2374 kcal/mol (4913.9186 without restraints) Performing minimization step: 3671. Total energy = 4919.4216 kcal/mol (4913.1044 without restraints) Performing minimization step: 3672. Total energy = 4918.6061 kcal/mol (4912.2904 without restraints) Performing minimization step: 3673. Total energy = 4917.7921 kcal/mol (4911.4779 without restraints) Performing minimization step: 3674. Total energy = 4916.9776 kcal/mol (4910.6650 without restraints) Performing minimization step: 3675. Total energy = 4916.1634 kcal/mol (4909.8523 without restraints) Performing minimization step: 3676. Total energy = 4915.3500 kcal/mol (4909.0404 without restraints) Performing minimization step: 3677. Total energy = 4914.5369 kcal/mol (4908.2288 without restraints) Performing minimization step: 3678. Total energy = 4913.7241 kcal/mol (4907.4175 without restraints) Performing minimization step: 3679. Total energy = 4912.9119 kcal/mol (4906.6070 without restraints) Performing minimization step: 3680. Total energy = 4912.1000 kcal/mol (4905.7965 without restraints) Performing minimization step: 3681. Total energy = 4911.2884 kcal/mol (4904.9865 without restraints) Performing minimization step: 3682. Total energy = 4910.4777 kcal/mol (4904.1772 without restraints) Performing minimization step: 3683. Total energy = 4909.6673 kcal/mol (4903.3685 without restraints) Performing minimization step: 3684. Total energy = 4908.8574 kcal/mol (4902.5599 without restraints) Performing minimization step: 3685. Total energy = 4908.0477 kcal/mol (4901.7518 without restraints) Performing minimization step: 3686. Total energy = 4907.2383 kcal/mol (4900.9440 without restraints) Performing minimization step: 3687. Total energy = 4906.4293 kcal/mol (4900.1365 without restraints) Performing minimization step: 3688. Total energy = 4905.6211 kcal/mol (4899.3298 without restraints) Performing minimization step: 3689. Total energy = 4904.8131 kcal/mol (4898.5234 without restraints) Performing minimization step: 3690. Total energy = 4904.0059 kcal/mol (4897.7176 without restraints) Performing minimization step: 3691. Total energy = 4903.1988 kcal/mol (4896.9121 without restraints) Performing minimization step: 3692. Total energy = 4902.3924 kcal/mol (4896.1072 without restraints) Performing minimization step: 3693. Total energy = 4901.5858 kcal/mol (4895.3020 without restraints) Performing minimization step: 3694. Total energy = 4900.7798 kcal/mol (4894.4976 without restraints) Performing minimization step: 3695. Total energy = 4899.9744 kcal/mol (4893.6937 without restraints) Performing minimization step: 3696. Total energy = 4899.1696 kcal/mol (4892.8905 without restraints) Performing minimization step: 3697. Total energy = 4898.3652 kcal/mol (4892.0875 without restraints) Performing minimization step: 3698. Total energy = 4897.5609 kcal/mol (4891.2848 without restraints) Performing minimization step: 3699. Total energy = 4896.7572 kcal/mol (4890.4826 without restraints) Performing minimization step: 3700. Total energy = 4895.9536 kcal/mol (4889.6805 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 4895.1508 kcal/mol (4888.8793 without restraints) Performing minimization step: 3702. Total energy = 4894.3490 kcal/mol (4888.0790 without restraints) Performing minimization step: 3703. Total energy = 4893.5471 kcal/mol (4887.2785 without restraints) Performing minimization step: 3704. Total energy = 4892.7456 kcal/mol (4886.4785 without restraints) Performing minimization step: 3705. Total energy = 4891.9444 kcal/mol (4885.6789 without restraints) Performing minimization step: 3706. Total energy = 4891.1443 kcal/mol (4884.8803 without restraints) Performing minimization step: 3707. Total energy = 4890.3442 kcal/mol (4884.0818 without restraints) Performing minimization step: 3708. Total energy = 4889.5445 kcal/mol (4883.2835 without restraints) Performing minimization step: 3709. Total energy = 4888.7449 kcal/mol (4882.4854 without restraints) Performing minimization step: 3710. Total energy = 4887.9455 kcal/mol (4881.6876 without restraints) Performing minimization step: 3711. Total energy = 4887.1467 kcal/mol (4880.8903 without restraints) Performing minimization step: 3712. Total energy = 4886.3484 kcal/mol (4880.0936 without restraints) Performing minimization step: 3713. Total energy = 4885.5505 kcal/mol (4879.2971 without restraints) Performing minimization step: 3714. Total energy = 4884.7531 kcal/mol (4878.5013 without restraints) Performing minimization step: 3715. Total energy = 4883.9561 kcal/mol (4877.7057 without restraints) Performing minimization step: 3716. Total energy = 4883.1599 kcal/mol (4876.9111 without restraints) Performing minimization step: 3717. Total energy = 4882.3637 kcal/mol (4876.1163 without restraints) Performing minimization step: 3718. Total energy = 4881.5678 kcal/mol (4875.3219 without restraints) Performing minimization step: 3719. Total energy = 4880.7725 kcal/mol (4874.5281 without restraints) Performing minimization step: 3720. Total energy = 4879.9780 kcal/mol (4873.7351 without restraints) Performing minimization step: 3721. Total energy = 4879.1837 kcal/mol (4872.9424 without restraints) Performing minimization step: 3722. Total energy = 4878.3895 kcal/mol (4872.1497 without restraints) Performing minimization step: 3723. Total energy = 4877.5961 kcal/mol (4871.3579 without restraints) Performing minimization step: 3724. Total energy = 4876.8031 kcal/mol (4870.5664 without restraints) Performing minimization step: 3725. Total energy = 4876.0104 kcal/mol (4869.7750 without restraints) Performing minimization step: 3726. Total energy = 4875.2177 kcal/mol (4868.9839 without restraints) Performing minimization step: 3727. Total energy = 4874.4254 kcal/mol (4868.1930 without restraints) Performing minimization step: 3728. Total energy = 4873.6335 kcal/mol (4867.4026 without restraints) Performing minimization step: 3729. Total energy = 4872.8422 kcal/mol (4866.6128 without restraints) Performing minimization step: 3730. Total energy = 4872.0511 kcal/mol (4865.8233 without restraints) Performing minimization step: 3731. Total energy = 4871.2606 kcal/mol (4865.0342 without restraints) Performing minimization step: 3732. Total energy = 4870.4706 kcal/mol (4864.2458 without restraints) Performing minimization step: 3733. Total energy = 4869.6811 kcal/mol (4863.4580 without restraints) Performing minimization step: 3734. Total energy = 4868.8922 kcal/mol (4862.6704 without restraints) Performing minimization step: 3735. Total energy = 4868.1035 kcal/mol (4861.8832 without restraints) Performing minimization step: 3736. Total energy = 4867.3150 kcal/mol (4861.0963 without restraints) Performing minimization step: 3737. Total energy = 4866.5271 kcal/mol (4860.3098 without restraints) Performing minimization step: 3738. Total energy = 4865.7396 kcal/mol (4859.5239 without restraints) Performing minimization step: 3739. Total energy = 4864.9523 kcal/mol (4858.7380 without restraints) Performing minimization step: 3740. Total energy = 4864.1654 kcal/mol (4857.9526 without restraints) Performing minimization step: 3741. Total energy = 4863.3788 kcal/mol (4857.1675 without restraints) Performing minimization step: 3742. Total energy = 4862.5927 kcal/mol (4856.3829 without restraints) Performing minimization step: 3743. Total energy = 4861.8069 kcal/mol (4855.5986 without restraints) Performing minimization step: 3744. Total energy = 4861.0218 kcal/mol (4854.8150 without restraints) Performing minimization step: 3745. Total energy = 4860.2372 kcal/mol (4854.0320 without restraints) Performing minimization step: 3746. Total energy = 4859.4532 kcal/mol (4853.2494 without restraints) Performing minimization step: 3747. Total energy = 4858.6691 kcal/mol (4852.4668 without restraints) Performing minimization step: 3748. Total energy = 4857.8854 kcal/mol (4851.6846 without restraints) Performing minimization step: 3749. Total energy = 4857.1022 kcal/mol (4850.9030 without restraints) Performing minimization step: 3750. Total energy = 4856.3198 kcal/mol (4850.1222 without restraints) Performing minimization step: 3751. Total energy = 4855.5375 kcal/mol (4849.3412 without restraints) Performing minimization step: 3752. Total energy = 4854.7555 kcal/mol (4848.5607 without restraints) Performing minimization step: 3753. Total energy = 4853.9736 kcal/mol (4847.7804 without restraints) Performing minimization step: 3754. Total energy = 4853.1927 kcal/mol (4847.0009 without restraints) Performing minimization step: 3755. Total energy = 4852.4119 kcal/mol (4846.2217 without restraints) Performing minimization step: 3756. Total energy = 4851.6317 kcal/mol (4845.4428 without restraints) Performing minimization step: 3757. Total energy = 4850.8515 kcal/mol (4844.6641 without restraints) Performing minimization step: 3758. Total energy = 4850.0717 kcal/mol (4843.8857 without restraints) Performing minimization step: 3759. Total energy = 4849.2925 kcal/mol (4843.1082 without restraints) Performing minimization step: 3760. Total energy = 4848.5134 kcal/mol (4842.3305 without restraints) Performing minimization step: 3761. Total energy = 4847.7351 kcal/mol (4841.5538 without restraints) Performing minimization step: 3762. Total energy = 4846.9574 kcal/mol (4840.7775 without restraints) Performing minimization step: 3763. Total energy = 4846.1796 kcal/mol (4840.0012 without restraints) Performing minimization step: 3764. Total energy = 4845.4021 kcal/mol (4839.2252 without restraints) Performing minimization step: 3765. Total energy = 4844.6250 kcal/mol (4838.4496 without restraints) Performing minimization step: 3766. Total energy = 4843.8487 kcal/mol (4837.6747 without restraints) Performing minimization step: 3767. Total energy = 4843.0724 kcal/mol (4836.9000 without restraints) Performing minimization step: 3768. Total energy = 4842.2967 kcal/mol (4836.1257 without restraints) Performing minimization step: 3769. Total energy = 4841.5213 kcal/mol (4835.3519 without restraints) Performing minimization step: 3770. Total energy = 4840.7462 kcal/mol (4834.5782 without restraints) Performing minimization step: 3771. Total energy = 4839.9715 kcal/mol (4833.8049 without restraints) Performing minimization step: 3772. Total energy = 4839.1973 kcal/mol (4833.0323 without restraints) Performing minimization step: 3773. Total energy = 4838.4232 kcal/mol (4832.2597 without restraints) Performing minimization step: 3774. Total energy = 4837.6496 kcal/mol (4831.4876 without restraints) Performing minimization step: 3775. Total energy = 4836.8764 kcal/mol (4830.7158 without restraints) Performing minimization step: 3776. Total energy = 4836.1034 kcal/mol (4829.9443 without restraints) Performing minimization step: 3777. Total energy = 4835.3311 kcal/mol (4829.1735 without restraints) Performing minimization step: 3778. Total energy = 4834.5601 kcal/mol (4828.4039 without restraints) Performing minimization step: 3779. Total energy = 4833.7886 kcal/mol (4827.6341 without restraints) Performing minimization step: 3780. Total energy = 4833.0178 kcal/mol (4826.8646 without restraints) Performing minimization step: 3781. Total energy = 4832.2468 kcal/mol (4826.0951 without restraints) Performing minimization step: 3782. Total energy = 4831.4762 kcal/mol (4825.3260 without restraints) Performing minimization step: 3783. Total energy = 4830.7060 kcal/mol (4824.5573 without restraints) Performing minimization step: 3784. Total energy = 4829.9361 kcal/mol (4823.7887 without restraints) Performing minimization step: 3785. Total energy = 4829.1670 kcal/mol (4823.0214 without restraints) Performing minimization step: 3786. Total energy = 4828.3986 kcal/mol (4822.2542 without restraints) Performing minimization step: 3787. Total energy = 4827.6299 kcal/mol (4821.4871 without restraints) Performing minimization step: 3788. Total energy = 4826.8618 kcal/mol (4820.7205 without restraints) Performing minimization step: 3789. Total energy = 4826.0941 kcal/mol (4819.9543 without restraints) Performing minimization step: 3790. Total energy = 4825.3267 kcal/mol (4819.1883 without restraints) Performing minimization step: 3791. Total energy = 4824.5593 kcal/mol (4818.4224 without restraints) Performing minimization step: 3792. Total energy = 4823.7925 kcal/mol (4817.6571 without restraints) Performing minimization step: 3793. Total energy = 4823.0263 kcal/mol (4816.8923 without restraints) Performing minimization step: 3794. Total energy = 4822.2603 kcal/mol (4816.1280 without restraints) Performing minimization step: 3795. Total energy = 4821.4950 kcal/mol (4815.3640 without restraints) Performing minimization step: 3796. Total energy = 4820.7294 kcal/mol (4814.6000 without restraints) Performing minimization step: 3797. Total energy = 4819.9648 kcal/mol (4813.8368 without restraints) Performing minimization step: 3798. Total energy = 4819.2004 kcal/mol (4813.0739 without restraints) Performing minimization step: 3799. Total energy = 4818.4365 kcal/mol (4812.3115 without restraints) Performing minimization step: 3800. Total energy = 4817.6732 kcal/mol (4811.5495 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 4816.9097 kcal/mol (4810.7876 without restraints) Performing minimization step: 3802. Total energy = 4816.1467 kcal/mol (4810.0260 without restraints) Performing minimization step: 3803. Total energy = 4815.3839 kcal/mol (4809.2647 without restraints) Performing minimization step: 3804. Total energy = 4814.6215 kcal/mol (4808.5038 without restraints) Performing minimization step: 3805. Total energy = 4813.8595 kcal/mol (4807.7432 without restraints) Performing minimization step: 3806. Total energy = 4813.0981 kcal/mol (4806.9833 without restraints) Performing minimization step: 3807. Total energy = 4812.3372 kcal/mol (4806.2241 without restraints) Performing minimization step: 3808. Total energy = 4811.5765 kcal/mol (4805.4646 without restraints) Performing minimization step: 3809. Total energy = 4810.8154 kcal/mol (4804.7050 without restraints) Performing minimization step: 3810. Total energy = 4810.0552 kcal/mol (4803.9463 without restraints) Performing minimization step: 3811. Total energy = 4809.2953 kcal/mol (4803.1877 without restraints) Performing minimization step: 3812. Total energy = 4808.5357 kcal/mol (4802.4296 without restraints) Performing minimization step: 3813. Total energy = 4807.7768 kcal/mol (4801.6724 without restraints) Performing minimization step: 3814. Total energy = 4807.0182 kcal/mol (4800.9151 without restraints) Performing minimization step: 3815. Total energy = 4806.2599 kcal/mol (4800.1583 without restraints) Performing minimization step: 3816. Total energy = 4805.5022 kcal/mol (4799.4020 without restraints) Performing minimization step: 3817. Total energy = 4804.7446 kcal/mol (4798.6459 without restraints) Performing minimization step: 3818. Total energy = 4803.9870 kcal/mol (4797.8898 without restraints) Performing minimization step: 3819. Total energy = 4803.2303 kcal/mol (4797.1345 without restraints) Performing minimization step: 3820. Total energy = 4802.4737 kcal/mol (4796.3794 without restraints) Performing minimization step: 3821. Total energy = 4801.7174 kcal/mol (4795.6246 without restraints) Performing minimization step: 3822. Total energy = 4800.9618 kcal/mol (4794.8705 without restraints) Performing minimization step: 3823. Total energy = 4800.2067 kcal/mol (4794.1168 without restraints) Performing minimization step: 3824. Total energy = 4799.4518 kcal/mol (4793.3635 without restraints) Performing minimization step: 3825. Total energy = 4798.6974 kcal/mol (4792.6105 without restraints) Performing minimization step: 3826. Total energy = 4797.9430 kcal/mol (4791.8575 without restraints) Performing minimization step: 3827. Total energy = 4797.1889 kcal/mol (4791.1048 without restraints) Performing minimization step: 3828. Total energy = 4796.4350 kcal/mol (4790.3525 without restraints) Performing minimization step: 3829. Total energy = 4795.6817 kcal/mol (4789.6006 without restraints) Performing minimization step: 3830. Total energy = 4794.9287 kcal/mol (4788.8490 without restraints) Performing minimization step: 3831. Total energy = 4794.1762 kcal/mol (4788.0980 without restraints) Performing minimization step: 3832. Total energy = 4793.4239 kcal/mol (4787.3471 without restraints) Performing minimization step: 3833. Total energy = 4792.6718 kcal/mol (4786.5965 without restraints) Performing minimization step: 3834. Total energy = 4791.9200 kcal/mol (4785.8461 without restraints) Performing minimization step: 3835. Total energy = 4791.1684 kcal/mol (4785.0960 without restraints) Performing minimization step: 3836. Total energy = 4790.4177 kcal/mol (4784.3467 without restraints) Performing minimization step: 3837. Total energy = 4789.6675 kcal/mol (4783.5980 without restraints) Performing minimization step: 3838. Total energy = 4788.9171 kcal/mol (4782.8491 without restraints) Performing minimization step: 3839. Total energy = 4788.1673 kcal/mol (4782.1008 without restraints) Performing minimization step: 3840. Total energy = 4787.4178 kcal/mol (4781.3527 without restraints) Performing minimization step: 3841. Total energy = 4786.6693 kcal/mol (4780.6058 without restraints) Performing minimization step: 3842. Total energy = 4785.9205 kcal/mol (4779.8583 without restraints) Performing minimization step: 3843. Total energy = 4785.1719 kcal/mol (4779.1112 without restraints) Performing minimization step: 3844. Total energy = 4784.4235 kcal/mol (4778.3642 without restraints) Performing minimization step: 3845. Total energy = 4783.6756 kcal/mol (4777.6178 without restraints) Performing minimization step: 3846. Total energy = 4782.9281 kcal/mol (4776.8717 without restraints) Performing minimization step: 3847. Total energy = 4782.1810 kcal/mol (4776.1261 without restraints) Performing minimization step: 3848. Total energy = 4781.4345 kcal/mol (4775.3810 without restraints) Performing minimization step: 3849. Total energy = 4780.6880 kcal/mol (4774.6360 without restraints) Performing minimization step: 3850. Total energy = 4779.9418 kcal/mol (4773.8911 without restraints) Performing minimization step: 3851. Total energy = 4779.1955 kcal/mol (4773.1459 without restraints) Performing minimization step: 3852. Total energy = 4778.4497 kcal/mol (4772.4020 without restraints) Performing minimization step: 3853. Total energy = 4777.7048 kcal/mol (4771.6585 without restraints) Performing minimization step: 3854. Total energy = 4776.9601 kcal/mol (4770.9153 without restraints) Performing minimization step: 3855. Total energy = 4776.2157 kcal/mol (4770.1723 without restraints) Performing minimization step: 3856. Total energy = 4775.4714 kcal/mol (4769.4295 without restraints) Performing minimization step: 3857. Total energy = 4774.7278 kcal/mol (4768.6874 without restraints) Performing minimization step: 3858. Total energy = 4773.9844 kcal/mol (4767.9454 without restraints) Performing minimization step: 3859. Total energy = 4773.2411 kcal/mol (4767.2035 without restraints) Performing minimization step: 3860. Total energy = 4772.4984 kcal/mol (4766.4622 without restraints) Performing minimization step: 3861. Total energy = 4771.7557 kcal/mol (4765.7210 without restraints) Performing minimization step: 3862. Total energy = 4771.0133 kcal/mol (4764.9800 without restraints) Performing minimization step: 3863. Total energy = 4770.2717 kcal/mol (4764.2398 without restraints) Performing minimization step: 3864. Total energy = 4769.5300 kcal/mol (4763.4995 without restraints) Performing minimization step: 3865. Total energy = 4768.7885 kcal/mol (4762.7595 without restraints) Performing minimization step: 3866. Total energy = 4768.0475 kcal/mol (4762.0199 without restraints) Performing minimization step: 3867. Total energy = 4767.3073 kcal/mol (4761.2813 without restraints) Performing minimization step: 3868. Total energy = 4766.5675 kcal/mol (4760.5430 without restraints) Performing minimization step: 3869. Total energy = 4765.8276 kcal/mol (4759.8043 without restraints) Performing minimization step: 3870. Total energy = 4765.0883 kcal/mol (4759.0665 without restraints) Performing minimization step: 3871. Total energy = 4764.3487 kcal/mol (4758.3283 without restraints) Performing minimization step: 3872. Total energy = 4763.6094 kcal/mol (4757.5905 without restraints) Performing minimization step: 3873. Total energy = 4762.8707 kcal/mol (4756.8532 without restraints) Performing minimization step: 3874. Total energy = 4762.1327 kcal/mol (4756.1168 without restraints) Performing minimization step: 3875. Total energy = 4761.3949 kcal/mol (4755.3804 without restraints) Performing minimization step: 3876. Total energy = 4760.6569 kcal/mol (4754.6437 without restraints) Performing minimization step: 3877. Total energy = 4759.9193 kcal/mol (4753.9074 without restraints) Performing minimization step: 3878. Total energy = 4759.1817 kcal/mol (4753.1714 without restraints) Performing minimization step: 3879. Total energy = 4758.4448 kcal/mol (4752.4360 without restraints) Performing minimization step: 3880. Total energy = 4757.7084 kcal/mol (4751.7009 without restraints) Performing minimization step: 3881. Total energy = 4756.9721 kcal/mol (4750.9661 without restraints) Performing minimization step: 3882. Total energy = 4756.2359 kcal/mol (4750.2313 without restraints) Performing minimization step: 3883. Total energy = 4755.5004 kcal/mol (4749.4972 without restraints) Performing minimization step: 3884. Total energy = 4754.7653 kcal/mol (4748.7636 without restraints) Performing minimization step: 3885. Total energy = 4754.0307 kcal/mol (4748.0304 without restraints) Performing minimization step: 3886. Total energy = 4753.2964 kcal/mol (4747.2975 without restraints) Performing minimization step: 3887. Total energy = 4752.5616 kcal/mol (4746.5641 without restraints) Performing minimization step: 3888. Total energy = 4751.8272 kcal/mol (4745.8311 without restraints) Performing minimization step: 3889. Total energy = 4751.0931 kcal/mol (4745.0984 without restraints) Performing minimization step: 3890. Total energy = 4750.3590 kcal/mol (4744.3658 without restraints) Performing minimization step: 3891. Total energy = 4749.6259 kcal/mol (4743.6340 without restraints) Performing minimization step: 3892. Total energy = 4748.8923 kcal/mol (4742.9019 without restraints) Performing minimization step: 3893. Total energy = 4748.1595 kcal/mol (4742.1705 without restraints) Performing minimization step: 3894. Total energy = 4747.4266 kcal/mol (4741.4392 without restraints) Performing minimization step: 3895. Total energy = 4746.6940 kcal/mol (4740.7079 without restraints) Performing minimization step: 3896. Total energy = 4745.9616 kcal/mol (4739.9769 without restraints) Performing minimization step: 3897. Total energy = 4745.2296 kcal/mol (4739.2463 without restraints) Performing minimization step: 3898. Total energy = 4744.4981 kcal/mol (4738.5162 without restraints) Performing minimization step: 3899. Total energy = 4743.7668 kcal/mol (4737.7863 without restraints) Performing minimization step: 3900. Total energy = 4743.0352 kcal/mol (4737.0562 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 4742.3041 kcal/mol (4736.3265 without restraints) Performing minimization step: 3902. Total energy = 4741.5734 kcal/mol (4735.5973 without restraints) Performing minimization step: 3903. Total energy = 4740.8428 kcal/mol (4734.8679 without restraints) Performing minimization step: 3904. Total energy = 4740.1126 kcal/mol (4734.1392 without restraints) Performing minimization step: 3905. Total energy = 4739.3828 kcal/mol (4733.4108 without restraints) Performing minimization step: 3906. Total energy = 4738.6533 kcal/mol (4732.6827 without restraints) Performing minimization step: 3907. Total energy = 4737.9233 kcal/mol (4731.9541 without restraints) Performing minimization step: 3908. Total energy = 4737.1938 kcal/mol (4731.2261 without restraints) Performing minimization step: 3909. Total energy = 4736.4645 kcal/mol (4730.4981 without restraints) Performing minimization step: 3910. Total energy = 4735.7355 kcal/mol (4729.7705 without restraints) Performing minimization step: 3911. Total energy = 4735.0075 kcal/mol (4729.0440 without restraints) Performing minimization step: 3912. Total energy = 4734.2789 kcal/mol (4728.3167 without restraints) Performing minimization step: 3913. Total energy = 4733.5505 kcal/mol (4727.5897 without restraints) Performing minimization step: 3914. Total energy = 4732.8224 kcal/mol (4726.8632 without restraints) Performing minimization step: 3915. Total energy = 4732.0959 kcal/mol (4726.1379 without restraints) Performing minimization step: 3916. Total energy = 4731.3684 kcal/mol (4725.4118 without restraints) Performing minimization step: 3917. Total energy = 4730.6409 kcal/mol (4724.6857 without restraints) Performing minimization step: 3918. Total energy = 4729.9137 kcal/mol (4723.9599 without restraints) Performing minimization step: 3919. Total energy = 4729.1865 kcal/mol (4723.2344 without restraints) Performing minimization step: 3920. Total energy = 4728.4599 kcal/mol (4722.5090 without restraints) Performing minimization step: 3921. Total energy = 4727.7333 kcal/mol (4721.7838 without restraints) Performing minimization step: 3922. Total energy = 4727.0065 kcal/mol (4721.0583 without restraints) Performing minimization step: 3923. Total energy = 4726.2802 kcal/mol (4720.3334 without restraints) Performing minimization step: 3924. Total energy = 4725.5541 kcal/mol (4719.6087 without restraints) Performing minimization step: 3925. Total energy = 4724.8284 kcal/mol (4718.8844 without restraints) Performing minimization step: 3926. Total energy = 4724.1026 kcal/mol (4718.1600 without restraints) Performing minimization step: 3927. Total energy = 4723.3770 kcal/mol (4717.4358 without restraints) Performing minimization step: 3928. Total energy = 4722.6514 kcal/mol (4716.7116 without restraints) Performing minimization step: 3929. Total energy = 4721.9262 kcal/mol (4715.9877 without restraints) Performing minimization step: 3930. Total energy = 4721.2009 kcal/mol (4715.2639 without restraints) Performing minimization step: 3931. Total energy = 4720.4767 kcal/mol (4714.5410 without restraints) Performing minimization step: 3932. Total energy = 4719.7527 kcal/mol (4713.8184 without restraints) Performing minimization step: 3933. Total energy = 4719.0286 kcal/mol (4713.0957 without restraints) Performing minimization step: 3934. Total energy = 4718.3043 kcal/mol (4712.3726 without restraints) Performing minimization step: 3935. Total energy = 4717.5801 kcal/mol (4711.6499 without restraints) Performing minimization step: 3936. Total energy = 4716.8563 kcal/mol (4710.9275 without restraints) Performing minimization step: 3937. Total energy = 4716.1326 kcal/mol (4710.2052 without restraints) Performing minimization step: 3938. Total energy = 4715.4088 kcal/mol (4709.4827 without restraints) Performing minimization step: 3939. Total energy = 4714.6850 kcal/mol (4708.7604 without restraints) Performing minimization step: 3940. Total energy = 4713.9615 kcal/mol (4708.0382 without restraints) Performing minimization step: 3941. Total energy = 4713.2381 kcal/mol (4707.3162 without restraints) Performing minimization step: 3942. Total energy = 4712.5152 kcal/mol (4706.5948 without restraints) Performing minimization step: 3943. Total energy = 4711.7923 kcal/mol (4705.8731 without restraints) Performing minimization step: 3944. Total energy = 4711.0698 kcal/mol (4705.1522 without restraints) Performing minimization step: 3945. Total energy = 4710.3470 kcal/mol (4704.4306 without restraints) Performing minimization step: 3946. Total energy = 4709.6241 kcal/mol (4703.7090 without restraints) Performing minimization step: 3947. Total energy = 4708.9017 kcal/mol (4702.9883 without restraints) Performing minimization step: 3948. Total energy = 4708.1794 kcal/mol (4702.2671 without restraints) Performing minimization step: 3949. Total energy = 4707.4580 kcal/mol (4701.5470 without restraints) Performing minimization step: 3950. Total energy = 4706.7361 kcal/mol (4700.8267 without restraints) Performing minimization step: 3951. Total energy = 4706.0141 kcal/mol (4700.1059 without restraints) Performing minimization step: 3952. Total energy = 4705.2921 kcal/mol (4699.3852 without restraints) Performing minimization step: 3953. Total energy = 4704.5700 kcal/mol (4698.6644 without restraints) Performing minimization step: 3954. Total energy = 4703.8494 kcal/mol (4697.9453 without restraints) Performing minimization step: 3955. Total energy = 4703.1280 kcal/mol (4697.2252 without restraints) Performing minimization step: 3956. Total energy = 4702.4061 kcal/mol (4696.5046 without restraints) Performing minimization step: 3957. Total energy = 4701.6847 kcal/mol (4695.7845 without restraints) Performing minimization step: 3958. Total energy = 4700.9633 kcal/mol (4695.0645 without restraints) Performing minimization step: 3959. Total energy = 4700.2420 kcal/mol (4694.3449 without restraints) Performing minimization step: 3960. Total energy = 4699.5208 kcal/mol (4693.6248 without restraints) Performing minimization step: 3961. Total energy = 4698.7995 kcal/mol (4692.9048 without restraints) Performing minimization step: 3962. Total energy = 4698.0783 kcal/mol (4692.1849 without restraints) Performing minimization step: 3963. Total energy = 4697.3568 kcal/mol (4691.4648 without restraints) Performing minimization step: 3964. Total energy = 4696.6356 kcal/mol (4690.7449 without restraints) Performing minimization step: 3965. Total energy = 4695.9145 kcal/mol (4690.0253 without restraints) Performing minimization step: 3966. Total energy = 4695.1935 kcal/mol (4689.3055 without restraints) Performing minimization step: 3967. Total energy = 4694.4723 kcal/mol (4688.5856 without restraints) Performing minimization step: 3968. Total energy = 4693.7510 kcal/mol (4687.8657 without restraints) Performing minimization step: 3969. Total energy = 4693.0296 kcal/mol (4687.1456 without restraints) Performing minimization step: 3970. Total energy = 4692.3085 kcal/mol (4686.4258 without restraints) Performing minimization step: 3971. Total energy = 4691.5878 kcal/mol (4685.7065 without restraints) Performing minimization step: 3972. Total energy = 4690.8668 kcal/mol (4684.9870 without restraints) Performing minimization step: 3973. Total energy = 4690.1460 kcal/mol (4684.2674 without restraints) Performing minimization step: 3974. Total energy = 4689.4255 kcal/mol (4683.5483 without restraints) Performing minimization step: 3975. Total energy = 4688.7046 kcal/mol (4682.8286 without restraints) Performing minimization step: 3976. Total energy = 4687.9838 kcal/mol (4682.1091 without restraints) Performing minimization step: 3977. Total energy = 4687.2631 kcal/mol (4681.3898 without restraints) Performing minimization step: 3978. Total energy = 4686.5425 kcal/mol (4680.6704 without restraints) Performing minimization step: 3979. Total energy = 4685.8215 kcal/mol (4679.9508 without restraints) Performing minimization step: 3980. Total energy = 4685.1005 kcal/mol (4679.2312 without restraints) Performing minimization step: 3981. Total energy = 4684.3800 kcal/mol (4678.5120 without restraints) Performing minimization step: 3982. Total energy = 4683.6588 kcal/mol (4677.7921 without restraints) Performing minimization step: 3983. Total energy = 4682.9383 kcal/mol (4677.0729 without restraints) Performing minimization step: 3984. Total energy = 4682.2173 kcal/mol (4676.3533 without restraints) Performing minimization step: 3985. Total energy = 4681.4968 kcal/mol (4675.6341 without restraints) Performing minimization step: 3986. Total energy = 4680.7757 kcal/mol (4674.9142 without restraints) Performing minimization step: 3987. Total energy = 4680.0549 kcal/mol (4674.1948 without restraints) Performing minimization step: 3988. Total energy = 4679.3343 kcal/mol (4673.4755 without restraints) Performing minimization step: 3989. Total energy = 4678.6134 kcal/mol (4672.7559 without restraints) Performing minimization step: 3990. Total energy = 4677.8929 kcal/mol (4672.0368 without restraints) Performing minimization step: 3991. Total energy = 4677.1720 kcal/mol (4671.3172 without restraints) Performing minimization step: 3992. Total energy = 4676.4510 kcal/mol (4670.5974 without restraints) Performing minimization step: 3993. Total energy = 4675.7298 kcal/mol (4669.8774 without restraints) Performing minimization step: 3994. Total energy = 4675.0088 kcal/mol (4669.1579 without restraints) Performing minimization step: 3995. Total energy = 4674.2882 kcal/mol (4668.4387 without restraints) Performing minimization step: 3996. Total energy = 4673.5673 kcal/mol (4667.7191 without restraints) Performing minimization step: 3997. Total energy = 4672.8463 kcal/mol (4666.9993 without restraints) Performing minimization step: 3998. Total energy = 4672.1255 kcal/mol (4666.2799 without restraints) Performing minimization step: 3999. Total energy = 4671.4052 kcal/mol (4665.5608 without restraints) Performing minimization step: 4000. Total energy = 4670.6842 kcal/mol (4664.8411 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 4669.9631 kcal/mol (4664.1213 without restraints) Performing minimization step: 4002. Total energy = 4669.2420 kcal/mol (4663.4015 without restraints) Performing minimization step: 4003. Total energy = 4668.5211 kcal/mol (4662.6819 without restraints) Performing minimization step: 4004. Total energy = 4667.8002 kcal/mol (4661.9623 without restraints) Performing minimization step: 4005. Total energy = 4667.0791 kcal/mol (4661.2425 without restraints) Performing minimization step: 4006. Total energy = 4666.3580 kcal/mol (4660.5227 without restraints) Performing minimization step: 4007. Total energy = 4665.6369 kcal/mol (4659.8029 without restraints) Performing minimization step: 4008. Total energy = 4664.9158 kcal/mol (4659.0832 without restraints) Performing minimization step: 4009. Total energy = 4664.1949 kcal/mol (4658.3635 without restraints) Performing minimization step: 4010. Total energy = 4663.4739 kcal/mol (4657.6438 without restraints) Performing minimization step: 4011. Total energy = 4662.7536 kcal/mol (4656.9248 without restraints) Performing minimization step: 4012. Total energy = 4662.0325 kcal/mol (4656.2050 without restraints) Performing minimization step: 4013. Total energy = 4661.3113 kcal/mol (4655.4850 without restraints) Performing minimization step: 4014. Total energy = 4660.5905 kcal/mol (4654.7655 without restraints) Performing minimization step: 4015. Total energy = 4659.8697 kcal/mol (4654.0461 without restraints) Performing minimization step: 4016. Total energy = 4659.1491 kcal/mol (4653.3268 without restraints) Performing minimization step: 4017. Total energy = 4658.4287 kcal/mol (4652.6076 without restraints) Performing minimization step: 4018. Total energy = 4657.7080 kcal/mol (4651.8882 without restraints) Performing minimization step: 4019. Total energy = 4656.9878 kcal/mol (4651.1693 without restraints) Performing minimization step: 4020. Total energy = 4656.2675 kcal/mol (4650.4503 without restraints) Performing minimization step: 4021. Total energy = 4655.5471 kcal/mol (4649.7312 without restraints) Performing minimization step: 4022. Total energy = 4654.8276 kcal/mol (4649.0130 without restraints) Performing minimization step: 4023. Total energy = 4654.1072 kcal/mol (4648.2940 without restraints) Performing minimization step: 4024. Total energy = 4653.3868 kcal/mol (4647.5748 without restraints) Performing minimization step: 4025. Total energy = 4652.6665 kcal/mol (4646.8561 without restraints) Performing minimization step: 4026. Total energy = 4651.9464 kcal/mol (4646.1370 without restraints) Performing minimization step: 4027. Total energy = 4651.2263 kcal/mol (4645.4181 without restraints) Performing minimization step: 4028. Total energy = 4650.5062 kcal/mol (4644.6993 without restraints) Performing minimization step: 4029. Total energy = 4649.7861 kcal/mol (4643.9805 without restraints) Performing minimization step: 4030. Total energy = 4649.0663 kcal/mol (4643.2621 without restraints) Performing minimization step: 4031. Total energy = 4648.3463 kcal/mol (4642.5433 without restraints) Performing minimization step: 4032. Total energy = 4647.6266 kcal/mol (4641.8249 without restraints) Performing minimization step: 4033. Total energy = 4646.9071 kcal/mol (4641.1068 without restraints) Performing minimization step: 4034. Total energy = 4646.1880 kcal/mol (4640.3889 without restraints) Performing minimization step: 4035. Total energy = 4645.4688 kcal/mol (4639.6710 without restraints) Performing minimization step: 4036. Total energy = 4644.7496 kcal/mol (4638.9531 without restraints) Performing minimization step: 4037. Total energy = 4644.0306 kcal/mol (4638.2353 without restraints) Performing minimization step: 4038. Total energy = 4643.3119 kcal/mol (4637.5180 without restraints) Performing minimization step: 4039. Total energy = 4642.5930 kcal/mol (4636.8004 without restraints) Performing minimization step: 4040. Total energy = 4641.8745 kcal/mol (4636.0832 without restraints) Performing minimization step: 4041. Total energy = 4641.1562 kcal/mol (4635.3662 without restraints) Performing minimization step: 4042. Total energy = 4640.4385 kcal/mol (4634.6498 without restraints) Performing minimization step: 4043. Total energy = 4639.7207 kcal/mol (4633.9331 without restraints) Performing minimization step: 4044. Total energy = 4639.0030 kcal/mol (4633.2168 without restraints) Performing minimization step: 4045. Total energy = 4638.2860 kcal/mol (4632.5012 without restraints) Performing minimization step: 4046. Total energy = 4637.5686 kcal/mol (4631.7850 without restraints) Performing minimization step: 4047. Total energy = 4636.8515 kcal/mol (4631.0692 without restraints) Performing minimization step: 4048. Total energy = 4636.1351 kcal/mol (4630.3541 without restraints) Performing minimization step: 4049. Total energy = 4635.4187 kcal/mol (4629.6390 without restraints) Performing minimization step: 4050. Total energy = 4634.7023 kcal/mol (4628.9239 without restraints) Performing minimization step: 4051. Total energy = 4633.9862 kcal/mol (4628.2091 without restraints) Performing minimization step: 4052. Total energy = 4633.2707 kcal/mol (4627.4950 without restraints) Performing minimization step: 4053. Total energy = 4632.5553 kcal/mol (4626.7808 without restraints) Performing minimization step: 4054. Total energy = 4631.8401 kcal/mol (4626.0670 without restraints) Performing minimization step: 4055. Total energy = 4631.1259 kcal/mol (4625.3540 without restraints) Performing minimization step: 4056. Total energy = 4630.4115 kcal/mol (4624.6409 without restraints) Performing minimization step: 4057. Total energy = 4629.6973 kcal/mol (4623.9280 without restraints) Performing minimization step: 4058. Total energy = 4628.9835 kcal/mol (4623.2155 without restraints) Performing minimization step: 4059. Total energy = 4628.2700 kcal/mol (4622.5033 without restraints) Performing minimization step: 4060. Total energy = 4627.5576 kcal/mol (4621.7923 without restraints) Performing minimization step: 4061. Total energy = 4626.8450 kcal/mol (4621.0810 without restraints) Performing minimization step: 4062. Total energy = 4626.1330 kcal/mol (4620.3703 without restraints) Performing minimization step: 4063. Total energy = 4625.4212 kcal/mol (4619.6600 without restraints) Performing minimization step: 4064. Total energy = 4624.7098 kcal/mol (4618.9497 without restraints) Performing minimization step: 4065. Total energy = 4623.9992 kcal/mol (4618.2406 without restraints) Performing minimization step: 4066. Total energy = 4623.2886 kcal/mol (4617.5311 without restraints) Performing minimization step: 4067. Total energy = 4622.5786 kcal/mol (4616.8224 without restraints) Performing minimization step: 4068. Total energy = 4621.8687 kcal/mol (4616.1138 without restraints) Performing minimization step: 4069. Total energy = 4621.1594 kcal/mol (4615.4058 without restraints) Performing minimization step: 4070. Total energy = 4620.4503 kcal/mol (4614.6981 without restraints) Performing minimization step: 4071. Total energy = 4619.7418 kcal/mol (4613.9910 without restraints) Performing minimization step: 4072. Total energy = 4619.0340 kcal/mol (4613.2843 without restraints) Performing minimization step: 4073. Total energy = 4618.3263 kcal/mol (4612.5780 without restraints) Performing minimization step: 4074. Total energy = 4617.6195 kcal/mol (4611.8725 without restraints) Performing minimization step: 4075. Total energy = 4616.9128 kcal/mol (4611.1671 without restraints) Performing minimization step: 4076. Total energy = 4616.2069 kcal/mol (4610.4626 without restraints) Performing minimization step: 4077. Total energy = 4615.5011 kcal/mol (4609.7581 without restraints) Performing minimization step: 4078. Total energy = 4614.7960 kcal/mol (4609.0544 without restraints) Performing minimization step: 4079. Total energy = 4614.0914 kcal/mol (4608.3510 without restraints) Performing minimization step: 4080. Total energy = 4613.3872 kcal/mol (4607.6481 without restraints) Performing minimization step: 4081. Total energy = 4612.6844 kcal/mol (4606.9469 without restraints) Performing minimization step: 4082. Total energy = 4611.9811 kcal/mol (4606.2447 without restraints) Performing minimization step: 4083. Total energy = 4611.2786 kcal/mol (4605.5435 without restraints) Performing minimization step: 4084. Total energy = 4610.5759 kcal/mol (4604.8421 without restraints) Performing minimization step: 4085. Total energy = 4609.8751 kcal/mol (4604.1426 without restraints) Performing minimization step: 4086. Total energy = 4609.1742 kcal/mol (4603.4431 without restraints) Performing minimization step: 4087. Total energy = 4608.4739 kcal/mol (4602.7442 without restraints) Performing minimization step: 4088. Total energy = 4607.7740 kcal/mol (4602.0456 without restraints) Performing minimization step: 4089. Total energy = 4607.0750 kcal/mol (4601.3478 without restraints) Performing minimization step: 4090. Total energy = 4606.3764 kcal/mol (4600.6506 without restraints) Performing minimization step: 4091. Total energy = 4605.6785 kcal/mol (4599.9541 without restraints) Performing minimization step: 4092. Total energy = 4604.9812 kcal/mol (4599.2580 without restraints) Performing minimization step: 4093. Total energy = 4604.2847 kcal/mol (4598.5629 without restraints) Performing minimization step: 4094. Total energy = 4603.5886 kcal/mol (4597.8682 without restraints) Performing minimization step: 4095. Total energy = 4602.8936 kcal/mol (4597.1746 without restraints) Performing minimization step: 4096. Total energy = 4602.1988 kcal/mol (4596.4810 without restraints) Performing minimization step: 4097. Total energy = 4601.5046 kcal/mol (4595.7882 without restraints) Performing minimization step: 4098. Total energy = 4600.8112 kcal/mol (4595.0961 without restraints) Performing minimization step: 4099. Total energy = 4600.1186 kcal/mol (4594.4049 without restraints) Performing minimization step: 4100. Total energy = 4599.4264 kcal/mol (4593.7140 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 4598.7353 kcal/mol (4593.0243 without restraints) Performing minimization step: 4102. Total energy = 4598.0447 kcal/mol (4592.3350 without restraints) Performing minimization step: 4103. Total energy = 4597.3546 kcal/mol (4591.6462 without restraints) Performing minimization step: 4104. Total energy = 4596.6650 kcal/mol (4590.9579 without restraints) Performing minimization step: 4105. Total energy = 4595.9766 kcal/mol (4590.2711 without restraints) Performing minimization step: 4106. Total energy = 4595.2887 kcal/mol (4589.5844 without restraints) Performing minimization step: 4107. Total energy = 4594.6017 kcal/mol (4588.8988 without restraints) Performing minimization step: 4108. Total energy = 4593.9149 kcal/mol (4588.2134 without restraints) Performing minimization step: 4109. Total energy = 4593.2292 kcal/mol (4587.5290 without restraints) Performing minimization step: 4110. Total energy = 4592.5443 kcal/mol (4586.8454 without restraints) Performing minimization step: 4111. Total energy = 4591.8600 kcal/mol (4586.1624 without restraints) Performing minimization step: 4112. Total energy = 4591.1766 kcal/mol (4585.4804 without restraints) Performing minimization step: 4113. Total energy = 4590.4931 kcal/mol (4584.7981 without restraints) Performing minimization step: 4114. Total energy = 4589.8106 kcal/mol (4584.1171 without restraints) Performing minimization step: 4115. Total energy = 4589.1294 kcal/mol (4583.4374 without restraints) Performing minimization step: 4116. Total energy = 4588.4487 kcal/mol (4582.7580 without restraints) Performing minimization step: 4117. Total energy = 4587.7688 kcal/mol (4582.0794 without restraints) Performing minimization step: 4118. Total energy = 4587.0892 kcal/mol (4581.4011 without restraints) Performing minimization step: 4119. Total energy = 4586.4102 kcal/mol (4580.7235 without restraints) Performing minimization step: 4120. Total energy = 4585.7322 kcal/mol (4580.0468 without restraints) Performing minimization step: 4121. Total energy = 4585.0550 kcal/mol (4579.3711 without restraints) Performing minimization step: 4122. Total energy = 4584.3784 kcal/mol (4578.6958 without restraints) Performing minimization step: 4123. Total energy = 4583.7028 kcal/mol (4578.0216 without restraints) Performing minimization step: 4124. Total energy = 4583.0277 kcal/mol (4577.3478 without restraints) Performing minimization step: 4125. Total energy = 4582.3536 kcal/mol (4576.6751 without restraints) Performing minimization step: 4126. Total energy = 4581.6798 kcal/mol (4576.0027 without restraints) Performing minimization step: 4127. Total energy = 4581.0072 kcal/mol (4575.3314 without restraints) Performing minimization step: 4128. Total energy = 4580.3351 kcal/mol (4574.6607 without restraints) Performing minimization step: 4129. Total energy = 4579.6649 kcal/mol (4573.9918 without restraints) Performing minimization step: 4130. Total energy = 4578.9944 kcal/mol (4573.3228 without restraints) Performing minimization step: 4131. Total energy = 4578.3248 kcal/mol (4572.6545 without restraints) Performing minimization step: 4132. Total energy = 4577.6559 kcal/mol (4571.9870 without restraints) Performing minimization step: 4133. Total energy = 4576.9880 kcal/mol (4571.3205 without restraints) Performing minimization step: 4134. Total energy = 4576.3206 kcal/mol (4570.6546 without restraints) Performing minimization step: 4135. Total energy = 4575.6540 kcal/mol (4569.9892 without restraints) Performing minimization step: 4136. Total energy = 4574.9883 kcal/mol (4569.3248 without restraints) Performing minimization step: 4137. Total energy = 4574.3236 kcal/mol (4568.6616 without restraints) Performing minimization step: 4138. Total energy = 4573.6590 kcal/mol (4567.9983 without restraints) Performing minimization step: 4139. Total energy = 4572.9955 kcal/mol (4567.3362 without restraints) Performing minimization step: 4140. Total energy = 4572.3328 kcal/mol (4566.6748 without restraints) Performing minimization step: 4141. Total energy = 4571.6706 kcal/mol (4566.0139 without restraints) Performing minimization step: 4142. Total energy = 4571.0094 kcal/mol (4565.3543 without restraints) Performing minimization step: 4143. Total energy = 4570.3488 kcal/mol (4564.6950 without restraints) Performing minimization step: 4144. Total energy = 4569.6891 kcal/mol (4564.0366 without restraints) Performing minimization step: 4145. Total energy = 4569.0306 kcal/mol (4563.3795 without restraints) Performing minimization step: 4146. Total energy = 4568.3726 kcal/mol (4562.7229 without restraints) Performing minimization step: 4147. Total energy = 4567.7151 kcal/mol (4562.0668 without restraints) Performing minimization step: 4148. Total energy = 4567.0586 kcal/mol (4561.4116 without restraints) Performing minimization step: 4149. Total energy = 4566.4025 kcal/mol (4560.7569 without restraints) Performing minimization step: 4150. Total energy = 4565.7471 kcal/mol (4560.1029 without restraints) Performing minimization step: 4151. Total energy = 4565.0926 kcal/mol (4559.4498 without restraints) Performing minimization step: 4152. Total energy = 4564.4388 kcal/mol (4558.7974 without restraints) Performing minimization step: 4153. Total energy = 4563.7858 kcal/mol (4558.1458 without restraints) Performing minimization step: 4154. Total energy = 4563.1339 kcal/mol (4557.4953 without restraints) Performing minimization step: 4155. Total energy = 4562.4825 kcal/mol (4556.8454 without restraints) Performing minimization step: 4156. Total energy = 4561.8319 kcal/mol (4556.1960 without restraints) Performing minimization step: 4157. Total energy = 4561.1821 kcal/mol (4555.5475 without restraints) Performing minimization step: 4158. Total energy = 4560.5334 kcal/mol (4554.9003 without restraints) Performing minimization step: 4159. Total energy = 4559.8850 kcal/mol (4554.2534 without restraints) Performing minimization step: 4160. Total energy = 4559.2376 kcal/mol (4553.6071 without restraints) Performing minimization step: 4161. Total energy = 4558.5906 kcal/mol (4552.9617 without restraints) Performing minimization step: 4162. Total energy = 4557.9447 kcal/mol (4552.3171 without restraints) Performing minimization step: 4163. Total energy = 4557.2991 kcal/mol (4551.6729 without restraints) Performing minimization step: 4164. Total energy = 4556.6543 kcal/mol (4551.0295 without restraints) Performing minimization step: 4165. Total energy = 4556.0106 kcal/mol (4550.3871 without restraints) Performing minimization step: 4166. Total energy = 4555.3671 kcal/mol (4549.7450 without restraints) Performing minimization step: 4167. Total energy = 4554.7245 kcal/mol (4549.1038 without restraints) Performing minimization step: 4168. Total energy = 4554.0825 kcal/mol (4548.4632 without restraints) Performing minimization step: 4169. Total energy = 4553.4414 kcal/mol (4547.8235 without restraints) Performing minimization step: 4170. Total energy = 4552.8012 kcal/mol (4547.1847 without restraints) Performing minimization step: 4171. Total energy = 4552.1618 kcal/mol (4546.5467 without restraints) Performing minimization step: 4172. Total energy = 4551.5232 kcal/mol (4545.9097 without restraints) Performing minimization step: 4173. Total energy = 4550.8855 kcal/mol (4545.2731 without restraints) Performing minimization step: 4174. Total energy = 4550.2482 kcal/mol (4544.6373 without restraints) Performing minimization step: 4175. Total energy = 4549.6120 kcal/mol (4544.0024 without restraints) Performing minimization step: 4176. Total energy = 4548.9761 kcal/mol (4543.3679 without restraints) Performing minimization step: 4177. Total energy = 4548.3408 kcal/mol (4542.7337 without restraints) Performing minimization step: 4178. Total energy = 4547.7062 kcal/mol (4542.1008 without restraints) Performing minimization step: 4179. Total energy = 4547.0725 kcal/mol (4541.4685 without restraints) Performing minimization step: 4180. Total energy = 4546.4399 kcal/mol (4540.8372 without restraints) Performing minimization step: 4181. Total energy = 4545.8073 kcal/mol (4540.2061 without restraints) Performing minimization step: 4182. Total energy = 4545.1757 kcal/mol (4539.5758 without restraints) Performing minimization step: 4183. Total energy = 4544.5448 kcal/mol (4538.9464 without restraints) Performing minimization step: 4184. Total energy = 4543.9147 kcal/mol (4538.3176 without restraints) Performing minimization step: 4185. Total energy = 4543.2856 kcal/mol (4537.6899 without restraints) Performing minimization step: 4186. Total energy = 4542.6570 kcal/mol (4537.0627 without restraints) Performing minimization step: 4187. Total energy = 4542.0290 kcal/mol (4536.4362 without restraints) Performing minimization step: 4188. Total energy = 4541.4021 kcal/mol (4535.8106 without restraints) Performing minimization step: 4189. Total energy = 4540.7756 kcal/mol (4535.1855 without restraints) Performing minimization step: 4190. Total energy = 4540.1496 kcal/mol (4534.5608 without restraints) Performing minimization step: 4191. Total energy = 4539.5243 kcal/mol (4533.9369 without restraints) Performing minimization step: 4192. Total energy = 4538.8997 kcal/mol (4533.3139 without restraints) Performing minimization step: 4193. Total energy = 4538.2761 kcal/mol (4532.6916 without restraints) Performing minimization step: 4194. Total energy = 4537.6528 kcal/mol (4532.0697 without restraints) Performing minimization step: 4195. Total energy = 4537.0303 kcal/mol (4531.4486 without restraints) Performing minimization step: 4196. Total energy = 4536.4085 kcal/mol (4530.8282 without restraints) Performing minimization step: 4197. Total energy = 4535.7876 kcal/mol (4530.2090 without restraints) Performing minimization step: 4198. Total energy = 4535.1672 kcal/mol (4529.5896 without restraints) Performing minimization step: 4199. Total energy = 4534.5473 kcal/mol (4528.9712 without restraints) Performing minimization step: 4200. Total energy = 4533.9284 kcal/mol (4528.3537 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 4533.3103 kcal/mol (4527.7370 without restraints) Performing minimization step: 4202. Total energy = 4532.6930 kcal/mol (4527.1210 without restraints) Performing minimization step: 4203. Total energy = 4532.0758 kcal/mol (4526.5052 without restraints) Performing minimization step: 4204. Total energy = 4531.4593 kcal/mol (4525.8901 without restraints) Performing minimization step: 4205. Total energy = 4530.8436 kcal/mol (4525.2758 without restraints) Performing minimization step: 4206. Total energy = 4530.2285 kcal/mol (4524.6621 without restraints) Performing minimization step: 4207. Total energy = 4529.6142 kcal/mol (4524.0492 without restraints) Performing minimization step: 4208. Total energy = 4529.0004 kcal/mol (4523.4368 without restraints) Performing minimization step: 4209. Total energy = 4528.3870 kcal/mol (4522.8247 without restraints) Performing minimization step: 4210. Total energy = 4527.7746 kcal/mol (4522.2140 without restraints) Performing minimization step: 4211. Total energy = 4527.1627 kcal/mol (4521.6033 without restraints) Performing minimization step: 4212. Total energy = 4526.5512 kcal/mol (4520.9931 without restraints) Performing minimization step: 4213. Total energy = 4525.9406 kcal/mol (4520.3840 without restraints) Performing minimization step: 4214. Total energy = 4525.3312 kcal/mol (4519.7761 without restraints) Performing minimization step: 4215. Total energy = 4524.7221 kcal/mol (4519.1683 without restraints) Performing minimization step: 4216. Total energy = 4524.1133 kcal/mol (4518.5609 without restraints) Performing minimization step: 4217. Total energy = 4523.5056 kcal/mol (4517.9546 without restraints) Performing minimization step: 4218. Total energy = 4522.8983 kcal/mol (4517.3486 without restraints) Performing minimization step: 4219. Total energy = 4522.2917 kcal/mol (4516.7434 without restraints) Performing minimization step: 4220. Total energy = 4521.6855 kcal/mol (4516.1387 without restraints) Performing minimization step: 4221. Total energy = 4521.0800 kcal/mol (4515.5345 without restraints) Performing minimization step: 4222. Total energy = 4520.4751 kcal/mol (4514.9311 without restraints) Performing minimization step: 4223. Total energy = 4519.8717 kcal/mol (4514.3290 without restraints) Performing minimization step: 4224. Total energy = 4519.2682 kcal/mol (4513.7270 without restraints) Performing minimization step: 4225. Total energy = 4518.6652 kcal/mol (4513.1254 without restraints) Performing minimization step: 4226. Total energy = 4518.0628 kcal/mol (4512.5244 without restraints) Performing minimization step: 4227. Total energy = 4517.4614 kcal/mol (4511.9244 without restraints) Performing minimization step: 4228. Total energy = 4516.8603 kcal/mol (4511.3247 without restraints) Performing minimization step: 4229. Total energy = 4516.2600 kcal/mol (4510.7258 without restraints) Performing minimization step: 4230. Total energy = 4515.6602 kcal/mol (4510.1274 without restraints) Performing minimization step: 4231. Total energy = 4515.0611 kcal/mol (4509.5297 without restraints) Performing minimization step: 4232. Total energy = 4514.4636 kcal/mol (4508.9337 without restraints) Performing minimization step: 4233. Total energy = 4513.8658 kcal/mol (4508.3371 without restraints) Performing minimization step: 4234. Total energy = 4513.2683 kcal/mol (4507.7410 without restraints) Performing minimization step: 4235. Total energy = 4512.6716 kcal/mol (4507.1457 without restraints) Performing minimization step: 4236. Total energy = 4512.0756 kcal/mol (4506.5512 without restraints) Performing minimization step: 4237. Total energy = 4511.4801 kcal/mol (4505.9570 without restraints) Performing minimization step: 4238. Total energy = 4510.8854 kcal/mol (4505.3637 without restraints) Performing minimization step: 4239. Total energy = 4510.2909 kcal/mol (4504.7708 without restraints) Performing minimization step: 4240. Total energy = 4509.6973 kcal/mol (4504.1784 without restraints) Performing minimization step: 4241. Total energy = 4509.1039 kcal/mol (4503.5864 without restraints) Performing minimization step: 4242. Total energy = 4508.5108 kcal/mol (4502.9947 without restraints) Performing minimization step: 4243. Total energy = 4507.9194 kcal/mol (4502.4049 without restraints) Performing minimization step: 4244. Total energy = 4507.3278 kcal/mol (4501.8146 without restraints) Performing minimization step: 4245. Total energy = 4506.7369 kcal/mol (4501.2251 without restraints) Performing minimization step: 4246. Total energy = 4506.1465 kcal/mol (4500.6361 without restraints) Performing minimization step: 4247. Total energy = 4505.5566 kcal/mol (4500.0476 without restraints) Performing minimization step: 4248. Total energy = 4504.9671 kcal/mol (4499.4594 without restraints) Performing minimization step: 4249. Total energy = 4504.3788 kcal/mol (4498.8726 without restraints) Performing minimization step: 4250. Total energy = 4503.7908 kcal/mol (4498.2860 without restraints) Performing minimization step: 4251. Total energy = 4503.2032 kcal/mol (4497.6996 without restraints) Performing minimization step: 4252. Total energy = 4502.6161 kcal/mol (4497.1140 without restraints) Performing minimization step: 4253. Total energy = 4502.0295 kcal/mol (4496.5289 without restraints) Performing minimization step: 4254. Total energy = 4501.4438 kcal/mol (4495.9446 without restraints) Performing minimization step: 4255. Total energy = 4500.8586 kcal/mol (4495.3608 without restraints) Performing minimization step: 4256. Total energy = 4500.2738 kcal/mol (4494.7774 without restraints) Performing minimization step: 4257. Total energy = 4499.6896 kcal/mol (4494.1945 without restraints) Performing minimization step: 4258. Total energy = 4499.1058 kcal/mol (4493.6122 without restraints) Performing minimization step: 4259. Total energy = 4498.5229 kcal/mol (4493.0307 without restraints) Performing minimization step: 4260. Total energy = 4497.9408 kcal/mol (4492.4499 without restraints) Performing minimization step: 4261. Total energy = 4497.3587 kcal/mol (4491.8693 without restraints) Performing minimization step: 4262. Total energy = 4496.7775 kcal/mol (4491.2895 without restraints) Performing minimization step: 4263. Total energy = 4496.1965 kcal/mol (4490.7099 without restraints) Performing minimization step: 4264. Total energy = 4495.6165 kcal/mol (4490.1314 without restraints) Performing minimization step: 4265. Total energy = 4495.0369 kcal/mol (4489.5531 without restraints) Performing minimization step: 4266. Total energy = 4494.4581 kcal/mol (4488.9757 without restraints) Performing minimization step: 4267. Total energy = 4493.8795 kcal/mol (4488.3985 without restraints) Performing minimization step: 4268. Total energy = 4493.3013 kcal/mol (4487.8216 without restraints) Performing minimization step: 4269. Total energy = 4492.7242 kcal/mol (4487.2459 without restraints) Performing minimization step: 4270. Total energy = 4492.1472 kcal/mol (4486.6704 without restraints) Performing minimization step: 4271. Total energy = 4491.5712 kcal/mol (4486.0957 without restraints) Performing minimization step: 4272. Total energy = 4490.9952 kcal/mol (4485.5212 without restraints) Performing minimization step: 4273. Total energy = 4490.4197 kcal/mol (4484.9471 without restraints) Performing minimization step: 4274. Total energy = 4489.8446 kcal/mol (4484.3734 without restraints) Performing minimization step: 4275. Total energy = 4489.2703 kcal/mol (4483.8005 without restraints) Performing minimization step: 4276. Total energy = 4488.6965 kcal/mol (4483.2281 without restraints) Performing minimization step: 4277. Total energy = 4488.1230 kcal/mol (4482.6560 without restraints) Performing minimization step: 4278. Total energy = 4487.5500 kcal/mol (4482.0844 without restraints) Performing minimization step: 4279. Total energy = 4486.9779 kcal/mol (4481.5137 without restraints) Performing minimization step: 4280. Total energy = 4486.4062 kcal/mol (4480.9434 without restraints) Performing minimization step: 4281. Total energy = 4485.8350 kcal/mol (4480.3736 without restraints) Performing minimization step: 4282. Total energy = 4485.2647 kcal/mol (4479.8047 without restraints) Performing minimization step: 4283. Total energy = 4484.6943 kcal/mol (4479.2357 without restraints) Performing minimization step: 4284. Total energy = 4484.1246 kcal/mol (4478.6674 without restraints) Performing minimization step: 4285. Total energy = 4483.5553 kcal/mol (4478.0995 without restraints) Performing minimization step: 4286. Total energy = 4482.9864 kcal/mol (4477.5321 without restraints) Performing minimization step: 4287. Total energy = 4482.4181 kcal/mol (4476.9651 without restraints) Performing minimization step: 4288. Total energy = 4481.8504 kcal/mol (4476.3988 without restraints) Performing minimization step: 4289. Total energy = 4481.2832 kcal/mol (4475.8330 without restraints) Performing minimization step: 4290. Total energy = 4480.7163 kcal/mol (4475.2673 without restraints) Performing minimization step: 4291. Total energy = 4480.1498 kcal/mol (4474.7024 without restraints) Performing minimization step: 4292. Total energy = 4479.5842 kcal/mol (4474.1382 without restraints) Performing minimization step: 4293. Total energy = 4479.0191 kcal/mol (4473.5748 without restraints) Performing minimization step: 4294. Total energy = 4478.4547 kcal/mol (4473.0114 without restraints) Performing minimization step: 4295. Total energy = 4477.8903 kcal/mol (4472.4485 without restraints) Performing minimization step: 4296. Total energy = 4477.3265 kcal/mol (4471.8862 without restraints) Performing minimization step: 4297. Total energy = 4476.7636 kcal/mol (4471.3249 without restraints) Performing minimization step: 4298. Total energy = 4476.2011 kcal/mol (4470.7635 without restraints) Performing minimization step: 4299. Total energy = 4475.6393 kcal/mol (4470.2032 without restraints) Performing minimization step: 4300. Total energy = 4475.0775 kcal/mol (4469.6427 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 4474.5162 kcal/mol (4469.0830 without restraints) Performing minimization step: 4302. Total energy = 4473.9558 kcal/mol (4468.5239 without restraints) Performing minimization step: 4303. Total energy = 4473.3956 kcal/mol (4467.9650 without restraints) Performing minimization step: 4304. Total energy = 4472.8358 kcal/mol (4467.4066 without restraints) Performing minimization step: 4305. Total energy = 4472.2766 kcal/mol (4466.8489 without restraints) Performing minimization step: 4306. Total energy = 4471.7181 kcal/mol (4466.2918 without restraints) Performing minimization step: 4307. Total energy = 4471.1596 kcal/mol (4465.7346 without restraints) Performing minimization step: 4308. Total energy = 4470.6020 kcal/mol (4465.1785 without restraints) Performing minimization step: 4309. Total energy = 4470.0447 kcal/mol (4464.6227 without restraints) Performing minimization step: 4310. Total energy = 4469.4879 kcal/mol (4464.0671 without restraints) Performing minimization step: 4311. Total energy = 4468.9311 kcal/mol (4463.5118 without restraints) Performing minimization step: 4312. Total energy = 4468.3753 kcal/mol (4462.9575 without restraints) Performing minimization step: 4313. Total energy = 4467.8202 kcal/mol (4462.4037 without restraints) Performing minimization step: 4314. Total energy = 4467.2654 kcal/mol (4461.8503 without restraints) Performing minimization step: 4315. Total energy = 4466.7109 kcal/mol (4461.2972 without restraints) Performing minimization step: 4316. Total energy = 4466.1569 kcal/mol (4460.7445 without restraints) Performing minimization step: 4317. Total energy = 4465.6034 kcal/mol (4460.1924 without restraints) Performing minimization step: 4318. Total energy = 4465.0504 kcal/mol (4459.6410 without restraints) Performing minimization step: 4319. Total energy = 4464.4976 kcal/mol (4459.0894 without restraints) Performing minimization step: 4320. Total energy = 4463.9451 kcal/mol (4458.5384 without restraints) Performing minimization step: 4321. Total energy = 4463.3936 kcal/mol (4457.9883 without restraints) Performing minimization step: 4322. Total energy = 4462.8422 kcal/mol (4457.4382 without restraints) Performing minimization step: 4323. Total energy = 4462.2916 kcal/mol (4456.8891 without restraints) Performing minimization step: 4324. Total energy = 4461.7413 kcal/mol (4456.3402 without restraints) Performing minimization step: 4325. Total energy = 4461.1914 kcal/mol (4455.7917 without restraints) Performing minimization step: 4326. Total energy = 4460.6421 kcal/mol (4455.2439 without restraints) Performing minimization step: 4327. Total energy = 4460.0936 kcal/mol (4454.6967 without restraints) Performing minimization step: 4328. Total energy = 4459.5453 kcal/mol (4454.1498 without restraints) Performing minimization step: 4329. Total energy = 4458.9975 kcal/mol (4453.6034 without restraints) Performing minimization step: 4330. Total energy = 4458.4499 kcal/mol (4453.0572 without restraints) Performing minimization step: 4331. Total energy = 4457.9025 kcal/mol (4452.5112 without restraints) Performing minimization step: 4332. Total energy = 4457.3557 kcal/mol (4451.9658 without restraints) Performing minimization step: 4333. Total energy = 4456.8096 kcal/mol (4451.4211 without restraints) Performing minimization step: 4334. Total energy = 4456.2639 kcal/mol (4450.8768 without restraints) Performing minimization step: 4335. Total energy = 4455.7186 kcal/mol (4450.3328 without restraints) Performing minimization step: 4336. Total energy = 4455.1737 kcal/mol (4449.7893 without restraints) Performing minimization step: 4337. Total energy = 4454.6296 kcal/mol (4449.2467 without restraints) Performing minimization step: 4338. Total energy = 4454.0854 kcal/mol (4448.7039 without restraints) Performing minimization step: 4339. Total energy = 4453.5420 kcal/mol (4448.1619 without restraints) Performing minimization step: 4340. Total energy = 4452.9991 kcal/mol (4447.6204 without restraints) Performing minimization step: 4341. Total energy = 4452.4563 kcal/mol (4447.0790 without restraints) Performing minimization step: 4342. Total energy = 4451.9146 kcal/mol (4446.5386 without restraints) Performing minimization step: 4343. Total energy = 4451.3729 kcal/mol (4445.9985 without restraints) Performing minimization step: 4344. Total energy = 4450.8322 kcal/mol (4445.4592 without restraints) Performing minimization step: 4345. Total energy = 4450.2914 kcal/mol (4444.9197 without restraints) Performing minimization step: 4346. Total energy = 4449.7511 kcal/mol (4444.3808 without restraints) Performing minimization step: 4347. Total energy = 4449.2113 kcal/mol (4443.8424 without restraints) Performing minimization step: 4348. Total energy = 4448.6717 kcal/mol (4443.3042 without restraints) Performing minimization step: 4349. Total energy = 4448.1330 kcal/mol (4442.7670 without restraints) Performing minimization step: 4350. Total energy = 4447.5945 kcal/mol (4442.2299 without restraints) Performing minimization step: 4351. Total energy = 4447.0564 kcal/mol (4441.6931 without restraints) Performing minimization step: 4352. Total energy = 4446.5187 kcal/mol (4441.1568 without restraints) Performing minimization step: 4353. Total energy = 4445.9821 kcal/mol (4440.6216 without restraints) Performing minimization step: 4354. Total energy = 4445.4452 kcal/mol (4440.0861 without restraints) Performing minimization step: 4355. Total energy = 4444.9085 kcal/mol (4439.5507 without restraints) Performing minimization step: 4356. Total energy = 4444.3729 kcal/mol (4439.0165 without restraints) Performing minimization step: 4357. Total energy = 4443.8374 kcal/mol (4438.4825 without restraints) Performing minimization step: 4358. Total energy = 4443.3022 kcal/mol (4437.9487 without restraints) Performing minimization step: 4359. Total energy = 4442.7677 kcal/mol (4437.4157 without restraints) Performing minimization step: 4360. Total energy = 4442.2336 kcal/mol (4436.8829 without restraints) Performing minimization step: 4361. Total energy = 4441.6996 kcal/mol (4436.3503 without restraints) Performing minimization step: 4362. Total energy = 4441.1662 kcal/mol (4435.8184 without restraints) Performing minimization step: 4363. Total energy = 4440.6332 kcal/mol (4435.2866 without restraints) Performing minimization step: 4364. Total energy = 4440.1006 kcal/mol (4434.7555 without restraints) Performing minimization step: 4365. Total energy = 4439.5683 kcal/mol (4434.2245 without restraints) Performing minimization step: 4366. Total energy = 4439.0369 kcal/mol (4433.6947 without restraints) Performing minimization step: 4367. Total energy = 4438.5057 kcal/mol (4433.1647 without restraints) Performing minimization step: 4368. Total energy = 4437.9747 kcal/mol (4432.6353 without restraints) Performing minimization step: 4369. Total energy = 4437.4447 kcal/mol (4432.1066 without restraints) Performing minimization step: 4370. Total energy = 4436.9145 kcal/mol (4431.5777 without restraints) Performing minimization step: 4371. Total energy = 4436.3850 kcal/mol (4431.0496 without restraints) Performing minimization step: 4372. Total energy = 4435.8560 kcal/mol (4430.5220 without restraints) Performing minimization step: 4373. Total energy = 4435.3277 kcal/mol (4429.9952 without restraints) Performing minimization step: 4374. Total energy = 4434.7995 kcal/mol (4429.4685 without restraints) Performing minimization step: 4375. Total energy = 4434.2717 kcal/mol (4428.9419 without restraints) Performing minimization step: 4376. Total energy = 4433.7443 kcal/mol (4428.4159 without restraints) Performing minimization step: 4377. Total energy = 4433.2172 kcal/mol (4427.8903 without restraints) Performing minimization step: 4378. Total energy = 4432.6908 kcal/mol (4427.3654 without restraints) Performing minimization step: 4379. Total energy = 4432.1647 kcal/mol (4426.8406 without restraints) Performing minimization step: 4380. Total energy = 4431.6392 kcal/mol (4426.3164 without restraints) Performing minimization step: 4381. Total energy = 4431.1136 kcal/mol (4425.7923 without restraints) Performing minimization step: 4382. Total energy = 4430.5884 kcal/mol (4425.2685 without restraints) Performing minimization step: 4383. Total energy = 4430.0637 kcal/mol (4424.7453 without restraints) Performing minimization step: 4384. Total energy = 4429.5398 kcal/mol (4424.2226 without restraints) Performing minimization step: 4385. Total energy = 4429.0160 kcal/mol (4423.7002 without restraints) Performing minimization step: 4386. Total energy = 4428.4924 kcal/mol (4423.1781 without restraints) Performing minimization step: 4387. Total energy = 4427.9699 kcal/mol (4422.6569 without restraints) Performing minimization step: 4388. Total energy = 4427.4472 kcal/mol (4422.1356 without restraints) Performing minimization step: 4389. Total energy = 4426.9251 kcal/mol (4421.6151 without restraints) Performing minimization step: 4390. Total energy = 4426.4033 kcal/mol (4421.0945 without restraints) Performing minimization step: 4391. Total energy = 4425.8819 kcal/mol (4420.5745 without restraints) Performing minimization step: 4392. Total energy = 4425.3608 kcal/mol (4420.0548 without restraints) Performing minimization step: 4393. Total energy = 4424.8398 kcal/mol (4419.5352 without restraints) Performing minimization step: 4394. Total energy = 4424.3195 kcal/mol (4419.0163 without restraints) Performing minimization step: 4395. Total energy = 4423.7996 kcal/mol (4418.4979 without restraints) Performing minimization step: 4396. Total energy = 4423.2801 kcal/mol (4417.9797 without restraints) Performing minimization step: 4397. Total energy = 4422.7620 kcal/mol (4417.4632 without restraints) Performing minimization step: 4398. Total energy = 4422.2436 kcal/mol (4416.9459 without restraints) Performing minimization step: 4399. Total energy = 4421.7254 kcal/mol (4416.4292 without restraints) Performing minimization step: 4400. Total energy = 4421.2074 kcal/mol (4415.9126 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 4420.6900 kcal/mol (4415.3966 without restraints) Performing minimization step: 4402. Total energy = 4420.1730 kcal/mol (4414.8809 without restraints) Performing minimization step: 4403. Total energy = 4419.6562 kcal/mol (4414.3655 without restraints) Performing minimization step: 4404. Total energy = 4419.1399 kcal/mol (4413.8508 without restraints) Performing minimization step: 4405. Total energy = 4418.6241 kcal/mol (4413.3363 without restraints) Performing minimization step: 4406. Total energy = 4418.1088 kcal/mol (4412.8223 without restraints) Performing minimization step: 4407. Total energy = 4417.5937 kcal/mol (4412.3086 without restraints) Performing minimization step: 4408. Total energy = 4417.0789 kcal/mol (4411.7953 without restraints) Performing minimization step: 4409. Total energy = 4416.5645 kcal/mol (4411.2823 without restraints) Performing minimization step: 4410. Total energy = 4416.0505 kcal/mol (4410.7696 without restraints) Performing minimization step: 4411. Total energy = 4415.5369 kcal/mol (4410.2575 without restraints) Performing minimization step: 4412. Total energy = 4415.0239 kcal/mol (4409.7459 without restraints) Performing minimization step: 4413. Total energy = 4414.5113 kcal/mol (4409.2347 without restraints) Performing minimization step: 4414. Total energy = 4413.9989 kcal/mol (4408.7236 without restraints) Performing minimization step: 4415. Total energy = 4413.4877 kcal/mol (4408.2139 without restraints) Performing minimization step: 4416. Total energy = 4412.9763 kcal/mol (4407.7038 without restraints) Performing minimization step: 4417. Total energy = 4412.4652 kcal/mol (4407.1942 without restraints) Performing minimization step: 4418. Total energy = 4411.9546 kcal/mol (4406.6849 without restraints) Performing minimization step: 4419. Total energy = 4411.4441 kcal/mol (4406.1758 without restraints) Performing minimization step: 4420. Total energy = 4410.9341 kcal/mol (4405.6673 without restraints) Performing minimization step: 4421. Total energy = 4410.4243 kcal/mol (4405.1588 without restraints) Performing minimization step: 4422. Total energy = 4409.9154 kcal/mol (4404.6513 without restraints) Performing minimization step: 4423. Total energy = 4409.4065 kcal/mol (4404.1437 without restraints) Performing minimization step: 4424. Total energy = 4408.8979 kcal/mol (4403.6366 without restraints) Performing minimization step: 4425. Total energy = 4408.3900 kcal/mol (4403.1301 without restraints) Performing minimization step: 4426. Total energy = 4407.8822 kcal/mol (4402.6237 without restraints) Performing minimization step: 4427. Total energy = 4407.3749 kcal/mol (4402.1178 without restraints) Performing minimization step: 4428. Total energy = 4406.8682 kcal/mol (4401.6125 without restraints) Performing minimization step: 4429. Total energy = 4406.3620 kcal/mol (4401.1076 without restraints) Performing minimization step: 4430. Total energy = 4405.8559 kcal/mol (4400.6030 without restraints) Performing minimization step: 4431. Total energy = 4405.3508 kcal/mol (4400.0993 without restraints) Performing minimization step: 4432. Total energy = 4404.8453 kcal/mol (4399.5951 without restraints) Performing minimization step: 4433. Total energy = 4404.3404 kcal/mol (4399.0918 without restraints) Performing minimization step: 4434. Total energy = 4403.8360 kcal/mol (4398.5886 without restraints) Performing minimization step: 4435. Total energy = 4403.3318 kcal/mol (4398.0857 without restraints) Performing minimization step: 4436. Total energy = 4402.8279 kcal/mol (4397.5833 without restraints) Performing minimization step: 4437. Total energy = 4402.3243 kcal/mol (4397.0811 without restraints) Performing minimization step: 4438. Total energy = 4401.8212 kcal/mol (4396.5794 without restraints) Performing minimization step: 4439. Total energy = 4401.3183 kcal/mol (4396.0779 without restraints) Performing minimization step: 4440. Total energy = 4400.8157 kcal/mol (4395.5765 without restraints) Performing minimization step: 4441. Total energy = 4400.3138 kcal/mol (4395.0762 without restraints) Performing minimization step: 4442. Total energy = 4399.8119 kcal/mol (4394.5756 without restraints) Performing minimization step: 4443. Total energy = 4399.3107 kcal/mol (4394.0758 without restraints) Performing minimization step: 4444. Total energy = 4398.8097 kcal/mol (4393.5762 without restraints) Performing minimization step: 4445. Total energy = 4398.3091 kcal/mol (4393.0770 without restraints) Performing minimization step: 4446. Total energy = 4397.8092 kcal/mol (4392.5785 without restraints) Performing minimization step: 4447. Total energy = 4397.3093 kcal/mol (4392.0800 without restraints) Performing minimization step: 4448. Total energy = 4396.8098 kcal/mol (4391.5818 without restraints) Performing minimization step: 4449. Total energy = 4396.3106 kcal/mol (4391.0841 without restraints) Performing minimization step: 4450. Total energy = 4395.8122 kcal/mol (4390.5871 without restraints) Performing minimization step: 4451. Total energy = 4395.3138 kcal/mol (4390.0901 without restraints) Performing minimization step: 4452. Total energy = 4394.8158 kcal/mol (4389.5934 without restraints) Performing minimization step: 4453. Total energy = 4394.3184 kcal/mol (4389.0974 without restraints) Performing minimization step: 4454. Total energy = 4393.8218 kcal/mol (4388.6023 without restraints) Performing minimization step: 4455. Total energy = 4393.3250 kcal/mol (4388.1069 without restraints) Performing minimization step: 4456. Total energy = 4392.8285 kcal/mol (4387.6117 without restraints) Performing minimization step: 4457. Total energy = 4392.3325 kcal/mol (4387.1171 without restraints) Performing minimization step: 4458. Total energy = 4391.8369 kcal/mol (4386.6228 without restraints) Performing minimization step: 4459. Total energy = 4391.3421 kcal/mol (4386.1296 without restraints) Performing minimization step: 4460. Total energy = 4390.8479 kcal/mol (4385.6367 without restraints) Performing minimization step: 4461. Total energy = 4390.3534 kcal/mol (4385.1435 without restraints) Performing minimization step: 4462. Total energy = 4389.8591 kcal/mol (4384.6507 without restraints) Performing minimization step: 4463. Total energy = 4389.3653 kcal/mol (4384.1583 without restraints) Performing minimization step: 4464. Total energy = 4388.8722 kcal/mol (4383.6666 without restraints) Performing minimization step: 4465. Total energy = 4388.3789 kcal/mol (4383.1746 without restraints) Performing minimization step: 4466. Total energy = 4387.8858 kcal/mol (4382.6829 without restraints) Performing minimization step: 4467. Total energy = 4387.3936 kcal/mol (4382.1921 without restraints) Performing minimization step: 4468. Total energy = 4386.9018 kcal/mol (4381.7016 without restraints) Performing minimization step: 4469. Total energy = 4386.4095 kcal/mol (4381.2107 without restraints) Performing minimization step: 4470. Total energy = 4385.9184 kcal/mol (4380.7210 without restraints) Performing minimization step: 4471. Total energy = 4385.4274 kcal/mol (4380.2314 without restraints) Performing minimization step: 4472. Total energy = 4384.9369 kcal/mol (4379.7424 without restraints) Performing minimization step: 4473. Total energy = 4384.4468 kcal/mol (4379.2538 without restraints) Performing minimization step: 4474. Total energy = 4383.9569 kcal/mol (4378.7651 without restraints) Performing minimization step: 4475. Total energy = 4383.4673 kcal/mol (4378.2769 without restraints) Performing minimization step: 4476. Total energy = 4382.9782 kcal/mol (4377.7892 without restraints) Performing minimization step: 4477. Total energy = 4382.4893 kcal/mol (4377.3017 without restraints) Performing minimization step: 4478. Total energy = 4382.0006 kcal/mol (4376.8143 without restraints) Performing minimization step: 4479. Total energy = 4381.5123 kcal/mol (4376.3274 without restraints) Performing minimization step: 4480. Total energy = 4381.0241 kcal/mol (4375.8406 without restraints) Performing minimization step: 4481. Total energy = 4380.5363 kcal/mol (4375.3542 without restraints) Performing minimization step: 4482. Total energy = 4380.0487 kcal/mol (4374.8680 without restraints) Performing minimization step: 4483. Total energy = 4379.5620 kcal/mol (4374.3827 without restraints) Performing minimization step: 4484. Total energy = 4379.0752 kcal/mol (4373.8973 without restraints) Performing minimization step: 4485. Total energy = 4378.5891 kcal/mol (4373.4125 without restraints) Performing minimization step: 4486. Total energy = 4378.1032 kcal/mol (4372.9281 without restraints) Performing minimization step: 4487. Total energy = 4377.6178 kcal/mol (4372.4440 without restraints) Performing minimization step: 4488. Total energy = 4377.1326 kcal/mol (4371.9602 without restraints) Performing minimization step: 4489. Total energy = 4376.6478 kcal/mol (4371.4768 without restraints) Performing minimization step: 4490. Total energy = 4376.1636 kcal/mol (4370.9939 without restraints) Performing minimization step: 4491. Total energy = 4375.6800 kcal/mol (4370.5121 without restraints) Performing minimization step: 4492. Total energy = 4375.1968 kcal/mol (4370.0299 without restraints) Performing minimization step: 4493. Total energy = 4374.7136 kcal/mol (4369.5481 without restraints) Performing minimization step: 4494. Total energy = 4374.2309 kcal/mol (4369.0669 without restraints) Performing minimization step: 4495. Total energy = 4373.7481 kcal/mol (4368.5854 without restraints) Performing minimization step: 4496. Total energy = 4373.2655 kcal/mol (4368.1041 without restraints) Performing minimization step: 4497. Total energy = 4372.7837 kcal/mol (4367.6239 without restraints) Performing minimization step: 4498. Total energy = 4372.3022 kcal/mol (4367.1437 without restraints) Performing minimization step: 4499. Total energy = 4371.8211 kcal/mol (4366.6640 without restraints) Performing minimization step: 4500. Total energy = 4371.3402 kcal/mol (4366.1844 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 4370.8596 kcal/mol (4365.7053 without restraints) Performing minimization step: 4502. Total energy = 4370.3799 kcal/mol (4365.2269 without restraints) Performing minimization step: 4503. Total energy = 4369.9002 kcal/mol (4364.7486 without restraints) Performing minimization step: 4504. Total energy = 4369.4210 kcal/mol (4364.2707 without restraints) Performing minimization step: 4505. Total energy = 4368.9422 kcal/mol (4363.7936 without restraints) Performing minimization step: 4506. Total energy = 4368.4638 kcal/mol (4363.3163 without restraints) Performing minimization step: 4507. Total energy = 4367.9853 kcal/mol (4362.8391 without restraints) Performing minimization step: 4508. Total energy = 4367.5070 kcal/mol (4362.3623 without restraints) Performing minimization step: 4509. Total energy = 4367.0294 kcal/mol (4361.8861 without restraints) Performing minimization step: 4510. Total energy = 4366.5520 kcal/mol (4361.4100 without restraints) Performing minimization step: 4511. Total energy = 4366.0750 kcal/mol (4360.9345 without restraints) Performing minimization step: 4512. Total energy = 4365.5982 kcal/mol (4360.4590 without restraints) Performing minimization step: 4513. Total energy = 4365.1224 kcal/mol (4359.9846 without restraints) Performing minimization step: 4514. Total energy = 4364.6462 kcal/mol (4359.5098 without restraints) Performing minimization step: 4515. Total energy = 4364.1706 kcal/mol (4359.0355 without restraints) Performing minimization step: 4516. Total energy = 4363.6952 kcal/mol (4358.5615 without restraints) Performing minimization step: 4517. Total energy = 4363.2204 kcal/mol (4358.0881 without restraints) Performing minimization step: 4518. Total energy = 4362.7458 kcal/mol (4357.6149 without restraints) Performing minimization step: 4519. Total energy = 4362.2713 kcal/mol (4357.1419 without restraints) Performing minimization step: 4520. Total energy = 4361.7972 kcal/mol (4356.6690 without restraints) Performing minimization step: 4521. Total energy = 4361.3235 kcal/mol (4356.1968 without restraints) Performing minimization step: 4522. Total energy = 4360.8504 kcal/mol (4355.7251 without restraints) Performing minimization step: 4523. Total energy = 4360.3776 kcal/mol (4355.2537 without restraints) Performing minimization step: 4524. Total energy = 4359.9053 kcal/mol (4354.7827 without restraints) Performing minimization step: 4525. Total energy = 4359.4328 kcal/mol (4354.3116 without restraints) Performing minimization step: 4526. Total energy = 4358.9610 kcal/mol (4353.8412 without restraints) Performing minimization step: 4527. Total energy = 4358.4897 kcal/mol (4353.3712 without restraints) Performing minimization step: 4528. Total energy = 4358.0186 kcal/mol (4352.9018 without restraints) Performing minimization step: 4529. Total energy = 4357.5479 kcal/mol (4352.4322 without restraints) Performing minimization step: 4530. Total energy = 4357.0773 kcal/mol (4351.9630 without restraints) Performing minimization step: 4531. Total energy = 4356.6072 kcal/mol (4351.4942 without restraints) Performing minimization step: 4532. Total energy = 4356.1375 kcal/mol (4351.0259 without restraints) Performing minimization step: 4533. Total energy = 4355.6677 kcal/mol (4350.5575 without restraints) Performing minimization step: 4534. Total energy = 4355.1989 kcal/mol (4350.0901 without restraints) Performing minimization step: 4535. Total energy = 4354.7304 kcal/mol (4349.6234 without restraints) Performing minimization step: 4536. Total energy = 4354.2623 kcal/mol (4349.1562 without restraints) Performing minimization step: 4537. Total energy = 4353.7940 kcal/mol (4348.6893 without restraints) Performing minimization step: 4538. Total energy = 4353.3260 kcal/mol (4348.2228 without restraints) Performing minimization step: 4539. Total energy = 4352.8587 kcal/mol (4347.7568 without restraints) Performing minimization step: 4540. Total energy = 4352.3917 kcal/mol (4347.2912 without restraints) Performing minimization step: 4541. Total energy = 4351.9248 kcal/mol (4346.8256 without restraints) Performing minimization step: 4542. Total energy = 4351.4586 kcal/mol (4346.3607 without restraints) Performing minimization step: 4543. Total energy = 4350.9920 kcal/mol (4345.8956 without restraints) Performing minimization step: 4544. Total energy = 4350.5259 kcal/mol (4345.4309 without restraints) Performing minimization step: 4545. Total energy = 4350.0605 kcal/mol (4344.9669 without restraints) Performing minimization step: 4546. Total energy = 4349.5951 kcal/mol (4344.5028 without restraints) Performing minimization step: 4547. Total energy = 4349.1307 kcal/mol (4344.0399 without restraints) Performing minimization step: 4548. Total energy = 4348.6660 kcal/mol (4343.5764 without restraints) Performing minimization step: 4549. Total energy = 4348.2014 kcal/mol (4343.1131 without restraints) Performing minimization step: 4550. Total energy = 4347.7371 kcal/mol (4342.6503 without restraints) Performing minimization step: 4551. Total energy = 4347.2733 kcal/mol (4342.1879 without restraints) Performing minimization step: 4552. Total energy = 4346.8101 kcal/mol (4341.7260 without restraints) Performing minimization step: 4553. Total energy = 4346.3471 kcal/mol (4341.2644 without restraints) Performing minimization step: 4554. Total energy = 4345.8843 kcal/mol (4340.8031 without restraints) Performing minimization step: 4555. Total energy = 4345.4221 kcal/mol (4340.3423 without restraints) Performing minimization step: 4556. Total energy = 4344.9603 kcal/mol (4339.8817 without restraints) Performing minimization step: 4557. Total energy = 4344.4984 kcal/mol (4339.4213 without restraints) Performing minimization step: 4558. Total energy = 4344.0378 kcal/mol (4338.9622 without restraints) Performing minimization step: 4559. Total energy = 4343.5769 kcal/mol (4338.5025 without restraints) Performing minimization step: 4560. Total energy = 4343.1157 kcal/mol (4338.0426 without restraints) Performing minimization step: 4561. Total energy = 4342.6555 kcal/mol (4337.5839 without restraints) Performing minimization step: 4562. Total energy = 4342.1953 kcal/mol (4337.1250 without restraints) Performing minimization step: 4563. Total energy = 4341.7358 kcal/mol (4336.6669 without restraints) Performing minimization step: 4564. Total energy = 4341.2763 kcal/mol (4336.2088 without restraints) Performing minimization step: 4565. Total energy = 4340.8173 kcal/mol (4335.7513 without restraints) Performing minimization step: 4566. Total energy = 4340.3585 kcal/mol (4335.2937 without restraints) Performing minimization step: 4567. Total energy = 4339.9001 kcal/mol (4334.8369 without restraints) Performing minimization step: 4568. Total energy = 4339.4422 kcal/mol (4334.3801 without restraints) Performing minimization step: 4569. Total energy = 4338.9848 kcal/mol (4333.9242 without restraints) Performing minimization step: 4570. Total energy = 4338.5278 kcal/mol (4333.4685 without restraints) Performing minimization step: 4571. Total energy = 4338.0707 kcal/mol (4333.0130 without restraints) Performing minimization step: 4572. Total energy = 4337.6145 kcal/mol (4332.5579 without restraints) Performing minimization step: 4573. Total energy = 4337.1580 kcal/mol (4332.1030 without restraints) Performing minimization step: 4574. Total energy = 4336.7017 kcal/mol (4331.6479 without restraints) Performing minimization step: 4575. Total energy = 4336.2456 kcal/mol (4331.1932 without restraints) Performing minimization step: 4576. Total energy = 4335.7903 kcal/mol (4330.7393 without restraints) Performing minimization step: 4577. Total energy = 4335.3349 kcal/mol (4330.2852 without restraints) Performing minimization step: 4578. Total energy = 4334.8792 kcal/mol (4329.8309 without restraints) Performing minimization step: 4579. Total energy = 4334.4245 kcal/mol (4329.3777 without restraints) Performing minimization step: 4580. Total energy = 4333.9704 kcal/mol (4328.9248 without restraints) Performing minimization step: 4581. Total energy = 4333.5162 kcal/mol (4328.4720 without restraints) Performing minimization step: 4582. Total energy = 4333.0624 kcal/mol (4328.0197 without restraints) Performing minimization step: 4583. Total energy = 4332.6090 kcal/mol (4327.5675 without restraints) Performing minimization step: 4584. Total energy = 4332.1560 kcal/mol (4327.1159 without restraints) Performing minimization step: 4585. Total energy = 4331.7032 kcal/mol (4326.6646 without restraints) Performing minimization step: 4586. Total energy = 4331.2509 kcal/mol (4326.2135 without restraints) Performing minimization step: 4587. Total energy = 4330.7991 kcal/mol (4325.7632 without restraints) Performing minimization step: 4588. Total energy = 4330.3471 kcal/mol (4325.3125 without restraints) Performing minimization step: 4589. Total energy = 4329.8955 kcal/mol (4324.8623 without restraints) Performing minimization step: 4590. Total energy = 4329.4442 kcal/mol (4324.4123 without restraints) Performing minimization step: 4591. Total energy = 4328.9936 kcal/mol (4323.9632 without restraints) Performing minimization step: 4592. Total energy = 4328.5432 kcal/mol (4323.5140 without restraints) Performing minimization step: 4593. Total energy = 4328.0925 kcal/mol (4323.0648 without restraints) Performing minimization step: 4594. Total energy = 4327.6429 kcal/mol (4322.6165 without restraints) Performing minimization step: 4595. Total energy = 4327.1933 kcal/mol (4322.1685 without restraints) Performing minimization step: 4596. Total energy = 4326.7444 kcal/mol (4321.7207 without restraints) Performing minimization step: 4597. Total energy = 4326.2961 kcal/mol (4321.2738 without restraints) Performing minimization step: 4598. Total energy = 4325.8475 kcal/mol (4320.8266 without restraints) Performing minimization step: 4599. Total energy = 4325.3991 kcal/mol (4320.3795 without restraints) Performing minimization step: 4600. Total energy = 4324.9511 kcal/mol (4319.9329 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 4324.5033 kcal/mol (4319.4867 without restraints) Performing minimization step: 4602. Total energy = 4324.0561 kcal/mol (4319.0409 without restraints) Performing minimization step: 4603. Total energy = 4323.6089 kcal/mol (4318.5948 without restraints) Performing minimization step: 4604. Total energy = 4323.1621 kcal/mol (4318.1494 without restraints) Performing minimization step: 4605. Total energy = 4322.7157 kcal/mol (4317.7044 without restraints) Performing minimization step: 4606. Total energy = 4322.2696 kcal/mol (4317.2596 without restraints) Performing minimization step: 4607. Total energy = 4321.8241 kcal/mol (4316.8155 without restraints) Performing minimization step: 4608. Total energy = 4321.3790 kcal/mol (4316.3718 without restraints) Performing minimization step: 4609. Total energy = 4320.9339 kcal/mol (4315.9282 without restraints) Performing minimization step: 4610. Total energy = 4320.4895 kcal/mol (4315.4850 without restraints) Performing minimization step: 4611. Total energy = 4320.0448 kcal/mol (4315.0418 without restraints) Performing minimization step: 4612. Total energy = 4319.6005 kcal/mol (4314.5987 without restraints) Performing minimization step: 4613. Total energy = 4319.1568 kcal/mol (4314.1564 without restraints) Performing minimization step: 4614. Total energy = 4318.7131 kcal/mol (4313.7140 without restraints) Performing minimization step: 4615. Total energy = 4318.2695 kcal/mol (4313.2719 without restraints) Performing minimization step: 4616. Total energy = 4317.8265 kcal/mol (4312.8302 without restraints) Performing minimization step: 4617. Total energy = 4317.3839 kcal/mol (4312.3890 without restraints) Performing minimization step: 4618. Total energy = 4316.9413 kcal/mol (4311.9477 without restraints) Performing minimization step: 4619. Total energy = 4316.4990 kcal/mol (4311.5070 without restraints) Performing minimization step: 4620. Total energy = 4316.0571 kcal/mol (4311.0663 without restraints) Performing minimization step: 4621. Total energy = 4315.6161 kcal/mol (4310.6266 without restraints) Performing minimization step: 4622. Total energy = 4315.1751 kcal/mol (4310.1870 without restraints) Performing minimization step: 4623. Total energy = 4314.7339 kcal/mol (4309.7471 without restraints) Performing minimization step: 4624. Total energy = 4314.2929 kcal/mol (4309.3075 without restraints) Performing minimization step: 4625. Total energy = 4313.8522 kcal/mol (4308.8682 without restraints) Performing minimization step: 4626. Total energy = 4313.4120 kcal/mol (4308.4294 without restraints) Performing minimization step: 4627. Total energy = 4312.9723 kcal/mol (4307.9910 without restraints) Performing minimization step: 4628. Total energy = 4312.5331 kcal/mol (4307.5532 without restraints) Performing minimization step: 4629. Total energy = 4312.0943 kcal/mol (4307.1159 without restraints) Performing minimization step: 4630. Total energy = 4311.6557 kcal/mol (4306.6785 without restraints) Performing minimization step: 4631. Total energy = 4311.2170 kcal/mol (4306.2412 without restraints) Performing minimization step: 4632. Total energy = 4310.7785 kcal/mol (4305.8041 without restraints) Performing minimization step: 4633. Total energy = 4310.3405 kcal/mol (4305.3674 without restraints) Performing minimization step: 4634. Total energy = 4309.9033 kcal/mol (4304.9320 without restraints) Performing minimization step: 4635. Total energy = 4309.4666 kcal/mol (4304.4962 without restraints) Performing minimization step: 4636. Total energy = 4309.0294 kcal/mol (4304.0604 without restraints) Performing minimization step: 4637. Total energy = 4308.5929 kcal/mol (4303.6251 without restraints) Performing minimization step: 4638. Total energy = 4308.1562 kcal/mol (4303.1900 without restraints) Performing minimization step: 4639. Total energy = 4307.7202 kcal/mol (4302.7554 without restraints) Performing minimization step: 4640. Total energy = 4307.2843 kcal/mol (4302.3208 without restraints) Performing minimization step: 4641. Total energy = 4306.8487 kcal/mol (4301.8865 without restraints) Performing minimization step: 4642. Total energy = 4306.4137 kcal/mol (4301.4529 without restraints) Performing minimization step: 4643. Total energy = 4305.9786 kcal/mol (4301.0191 without restraints) Performing minimization step: 4644. Total energy = 4305.5447 kcal/mol (4300.5866 without restraints) Performing minimization step: 4645. Total energy = 4305.1105 kcal/mol (4300.1539 without restraints) Performing minimization step: 4646. Total energy = 4304.6764 kcal/mol (4299.7211 without restraints) Performing minimization step: 4647. Total energy = 4304.2427 kcal/mol (4299.2887 without restraints) Performing minimization step: 4648. Total energy = 4303.8089 kcal/mol (4298.8562 without restraints) Performing minimization step: 4649. Total energy = 4303.3758 kcal/mol (4298.4245 without restraints) Performing minimization step: 4650. Total energy = 4302.9434 kcal/mol (4297.9935 without restraints) Performing minimization step: 4651. Total energy = 4302.5109 kcal/mol (4297.5624 without restraints) Performing minimization step: 4652. Total energy = 4302.0788 kcal/mol (4297.1317 without restraints) Performing minimization step: 4653. Total energy = 4301.6468 kcal/mol (4296.7009 without restraints) Performing minimization step: 4654. Total energy = 4301.2153 kcal/mol (4296.2708 without restraints) Performing minimization step: 4655. Total energy = 4300.7838 kcal/mol (4295.8407 without restraints) Performing minimization step: 4656. Total energy = 4300.3529 kcal/mol (4295.4111 without restraints) Performing minimization step: 4657. Total energy = 4299.9223 kcal/mol (4294.9820 without restraints) Performing minimization step: 4658. Total energy = 4299.4918 kcal/mol (4294.5527 without restraints) Performing minimization step: 4659. Total energy = 4299.0615 kcal/mol (4294.1238 without restraints) Performing minimization step: 4660. Total energy = 4298.6315 kcal/mol (4293.6951 without restraints) Performing minimization step: 4661. Total energy = 4298.2022 kcal/mol (4293.2672 without restraints) Performing minimization step: 4662. Total energy = 4297.7729 kcal/mol (4292.8392 without restraints) Performing minimization step: 4663. Total energy = 4297.3437 kcal/mol (4292.4115 without restraints) Performing minimization step: 4664. Total energy = 4296.9151 kcal/mol (4291.9845 without restraints) Performing minimization step: 4665. Total energy = 4296.4869 kcal/mol (4291.5575 without restraints) Performing minimization step: 4666. Total energy = 4296.0589 kcal/mol (4291.1309 without restraints) Performing minimization step: 4667. Total energy = 4295.6315 kcal/mol (4290.7049 without restraints) Performing minimization step: 4668. Total energy = 4295.2041 kcal/mol (4290.2786 without restraints) Performing minimization step: 4669. Total energy = 4294.7770 kcal/mol (4289.8530 without restraints) Performing minimization step: 4670. Total energy = 4294.3505 kcal/mol (4289.4278 without restraints) Performing minimization step: 4671. Total energy = 4293.9239 kcal/mol (4289.0025 without restraints) Performing minimization step: 4672. Total energy = 4293.4973 kcal/mol (4288.5773 without restraints) Performing minimization step: 4673. Total energy = 4293.0711 kcal/mol (4288.1524 without restraints) Performing minimization step: 4674. Total energy = 4292.6454 kcal/mol (4287.7280 without restraints) Performing minimization step: 4675. Total energy = 4292.2198 kcal/mol (4287.3038 without restraints) Performing minimization step: 4676. Total energy = 4291.7948 kcal/mol (4286.8803 without restraints) Performing minimization step: 4677. Total energy = 4291.3701 kcal/mol (4286.4569 without restraints) Performing minimization step: 4678. Total energy = 4290.9462 kcal/mol (4286.0344 without restraints) Performing minimization step: 4679. Total energy = 4290.5227 kcal/mol (4285.6121 without restraints) Performing minimization step: 4680. Total energy = 4290.0985 kcal/mol (4285.1892 without restraints) Performing minimization step: 4681. Total energy = 4289.6745 kcal/mol (4284.7667 without restraints) Performing minimization step: 4682. Total energy = 4289.2509 kcal/mol (4284.3445 without restraints) Performing minimization step: 4683. Total energy = 4288.8279 kcal/mol (4283.9228 without restraints) Performing minimization step: 4684. Total energy = 4288.4051 kcal/mol (4283.5013 without restraints) Performing minimization step: 4685. Total energy = 4287.9826 kcal/mol (4283.0801 without restraints) Performing minimization step: 4686. Total energy = 4287.5602 kcal/mol (4282.6593 without restraints) Performing minimization step: 4687. Total energy = 4287.1385 kcal/mol (4282.2388 without restraints) Performing minimization step: 4688. Total energy = 4286.7166 kcal/mol (4281.8182 without restraints) Performing minimization step: 4689. Total energy = 4286.2954 kcal/mol (4281.3984 without restraints) Performing minimization step: 4690. Total energy = 4285.8745 kcal/mol (4280.9788 without restraints) Performing minimization step: 4691. Total energy = 4285.4535 kcal/mol (4280.5592 without restraints) Performing minimization step: 4692. Total energy = 4285.0335 kcal/mol (4280.1405 without restraints) Performing minimization step: 4693. Total energy = 4284.6130 kcal/mol (4279.7214 without restraints) Performing minimization step: 4694. Total energy = 4284.1928 kcal/mol (4279.3027 without restraints) Performing minimization step: 4695. Total energy = 4283.7728 kcal/mol (4278.8839 without restraints) Performing minimization step: 4696. Total energy = 4283.3536 kcal/mol (4278.4662 without restraints) Performing minimization step: 4697. Total energy = 4282.9350 kcal/mol (4278.0489 without restraints) Performing minimization step: 4698. Total energy = 4282.5165 kcal/mol (4277.6317 without restraints) Performing minimization step: 4699. Total energy = 4282.0982 kcal/mol (4277.2148 without restraints) Performing minimization step: 4700. Total energy = 4281.6795 kcal/mol (4276.7973 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 4281.2612 kcal/mol (4276.3803 without restraints) Performing minimization step: 4702. Total energy = 4280.8434 kcal/mol (4275.9641 without restraints) Performing minimization step: 4703. Total energy = 4280.4263 kcal/mol (4275.5481 without restraints) Performing minimization step: 4704. Total energy = 4280.0087 kcal/mol (4275.1319 without restraints) Performing minimization step: 4705. Total energy = 4279.5918 kcal/mol (4274.7165 without restraints) Performing minimization step: 4706. Total energy = 4279.1749 kcal/mol (4274.3009 without restraints) Performing minimization step: 4707. Total energy = 4278.7585 kcal/mol (4273.8858 without restraints) Performing minimization step: 4708. Total energy = 4278.3426 kcal/mol (4273.4713 without restraints) Performing minimization step: 4709. Total energy = 4277.9267 kcal/mol (4273.0567 without restraints) Performing minimization step: 4710. Total energy = 4277.5111 kcal/mol (4272.6425 without restraints) Performing minimization step: 4711. Total energy = 4277.0963 kcal/mol (4272.2291 without restraints) Performing minimization step: 4712. Total energy = 4276.6814 kcal/mol (4271.8155 without restraints) Performing minimization step: 4713. Total energy = 4276.2670 kcal/mol (4271.4024 without restraints) Performing minimization step: 4714. Total energy = 4275.8526 kcal/mol (4270.9894 without restraints) Performing minimization step: 4715. Total energy = 4275.4387 kcal/mol (4270.5769 without restraints) Performing minimization step: 4716. Total energy = 4275.0254 kcal/mol (4270.1647 without restraints) Performing minimization step: 4717. Total energy = 4274.6116 kcal/mol (4269.7525 without restraints) Performing minimization step: 4718. Total energy = 4274.1983 kcal/mol (4269.3405 without restraints) Performing minimization step: 4719. Total energy = 4273.7852 kcal/mol (4268.9288 without restraints) Performing minimization step: 4720. Total energy = 4273.3725 kcal/mol (4268.5174 without restraints) Performing minimization step: 4721. Total energy = 4272.9602 kcal/mol (4268.1065 without restraints) Performing minimization step: 4722. Total energy = 4272.5480 kcal/mol (4267.6956 without restraints) Performing minimization step: 4723. Total energy = 4272.1364 kcal/mol (4267.2854 without restraints) Performing minimization step: 4724. Total energy = 4271.7252 kcal/mol (4266.8755 without restraints) Performing minimization step: 4725. Total energy = 4271.3139 kcal/mol (4266.4656 without restraints) Performing minimization step: 4726. Total energy = 4270.9030 kcal/mol (4266.0560 without restraints) Performing minimization step: 4727. Total energy = 4270.4924 kcal/mol (4265.6467 without restraints) Performing minimization step: 4728. Total energy = 4270.0818 kcal/mol (4265.2375 without restraints) Performing minimization step: 4729. Total energy = 4269.6716 kcal/mol (4264.8286 without restraints) Performing minimization step: 4730. Total energy = 4269.2616 kcal/mol (4264.4200 without restraints) Performing minimization step: 4731. Total energy = 4268.8521 kcal/mol (4264.0119 without restraints) Performing minimization step: 4732. Total energy = 4268.4428 kcal/mol (4263.6038 without restraints) Performing minimization step: 4733. Total energy = 4268.0337 kcal/mol (4263.1962 without restraints) Performing minimization step: 4734. Total energy = 4267.6251 kcal/mol (4262.7888 without restraints) Performing minimization step: 4735. Total energy = 4267.2165 kcal/mol (4262.3816 without restraints) Performing minimization step: 4736. Total energy = 4266.8085 kcal/mol (4261.9749 without restraints) Performing minimization step: 4737. Total energy = 4266.4004 kcal/mol (4261.5682 without restraints) Performing minimization step: 4738. Total energy = 4265.9927 kcal/mol (4261.1620 without restraints) Performing minimization step: 4739. Total energy = 4265.5855 kcal/mol (4260.7560 without restraints) Performing minimization step: 4740. Total energy = 4265.1784 kcal/mol (4260.3502 without restraints) Performing minimization step: 4741. Total energy = 4264.7715 kcal/mol (4259.9449 without restraints) Performing minimization step: 4742. Total energy = 4264.3652 kcal/mol (4259.5398 without restraints) Performing minimization step: 4743. Total energy = 4263.9594 kcal/mol (4259.1355 without restraints) Performing minimization step: 4744. Total energy = 4263.5534 kcal/mol (4258.7307 without restraints) Performing minimization step: 4745. Total energy = 4263.1480 kcal/mol (4258.3265 without restraints) Performing minimization step: 4746. Total energy = 4262.7429 kcal/mol (4257.9229 without restraints) Performing minimization step: 4747. Total energy = 4262.3377 kcal/mol (4257.5190 without restraints) Performing minimization step: 4748. Total energy = 4261.9327 kcal/mol (4257.1153 without restraints) Performing minimization step: 4749. Total energy = 4261.5281 kcal/mol (4256.7121 without restraints) Performing minimization step: 4750. Total energy = 4261.1237 kcal/mol (4256.3091 without restraints) Performing minimization step: 4751. Total energy = 4260.7198 kcal/mol (4255.9065 without restraints) Performing minimization step: 4752. Total energy = 4260.3160 kcal/mol (4255.5041 without restraints) Performing minimization step: 4753. Total energy = 4259.9127 kcal/mol (4255.1020 without restraints) Performing minimization step: 4754. Total energy = 4259.5093 kcal/mol (4254.7000 without restraints) Performing minimization step: 4755. Total energy = 4259.1063 kcal/mol (4254.2983 without restraints) Performing minimization step: 4756. Total energy = 4258.7033 kcal/mol (4253.8965 without restraints) Performing minimization step: 4757. Total energy = 4258.3013 kcal/mol (4253.4960 without restraints) Performing minimization step: 4758. Total energy = 4257.8994 kcal/mol (4253.0954 without restraints) Performing minimization step: 4759. Total energy = 4257.4973 kcal/mol (4252.6947 without restraints) Performing minimization step: 4760. Total energy = 4257.0959 kcal/mol (4252.2951 without restraints) Performing minimization step: 4761. Total energy = 4256.6951 kcal/mol (4251.8953 without restraints) Performing minimization step: 4762. Total energy = 4256.2941 kcal/mol (4251.4955 without restraints) Performing minimization step: 4763. Total energy = 4255.8934 kcal/mol (4251.0963 without restraints) Performing minimization step: 4764. Total energy = 4255.4935 kcal/mol (4250.6976 without restraints) Performing minimization step: 4765. Total energy = 4255.0933 kcal/mol (4250.2988 without restraints) Performing minimization step: 4766. Total energy = 4254.6930 kcal/mol (4249.8997 without restraints) Performing minimization step: 4767. Total energy = 4254.2932 kcal/mol (4249.5014 without restraints) Performing minimization step: 4768. Total energy = 4253.8939 kcal/mol (4249.1034 without restraints) Performing minimization step: 4769. Total energy = 4253.4946 kcal/mol (4248.7054 without restraints) Performing minimization step: 4770. Total energy = 4253.0957 kcal/mol (4248.3078 without restraints) Performing minimization step: 4771. Total energy = 4252.6974 kcal/mol (4247.9109 without restraints) Performing minimization step: 4772. Total energy = 4252.2992 kcal/mol (4247.5142 without restraints) Performing minimization step: 4773. Total energy = 4251.9011 kcal/mol (4247.1172 without restraints) Performing minimization step: 4774. Total energy = 4251.5029 kcal/mol (4246.7203 without restraints) Performing minimization step: 4775. Total energy = 4251.1057 kcal/mol (4246.3246 without restraints) Performing minimization step: 4776. Total energy = 4250.7084 kcal/mol (4245.9286 without restraints) Performing minimization step: 4777. Total energy = 4250.3113 kcal/mol (4245.5328 without restraints) Performing minimization step: 4778. Total energy = 4249.9144 kcal/mol (4245.1373 without restraints) Performing minimization step: 4779. Total energy = 4249.5175 kcal/mol (4244.7418 without restraints) Performing minimization step: 4780. Total energy = 4249.1214 kcal/mol (4244.3470 without restraints) Performing minimization step: 4781. Total energy = 4248.7253 kcal/mol (4243.9522 without restraints) Performing minimization step: 4782. Total energy = 4248.3294 kcal/mol (4243.5577 without restraints) Performing minimization step: 4783. Total energy = 4247.9341 kcal/mol (4243.1638 without restraints) Performing minimization step: 4784. Total energy = 4247.5391 kcal/mol (4242.7702 without restraints) Performing minimization step: 4785. Total energy = 4247.1444 kcal/mol (4242.3766 without restraints) Performing minimization step: 4786. Total energy = 4246.7501 kcal/mol (4241.9838 without restraints) Performing minimization step: 4787. Total energy = 4246.3557 kcal/mol (4241.5906 without restraints) Performing minimization step: 4788. Total energy = 4245.9620 kcal/mol (4241.1983 without restraints) Performing minimization step: 4789. Total energy = 4245.5680 kcal/mol (4240.8056 without restraints) Performing minimization step: 4790. Total energy = 4245.1750 kcal/mol (4240.4140 without restraints) Performing minimization step: 4791. Total energy = 4244.7814 kcal/mol (4240.0218 without restraints) Performing minimization step: 4792. Total energy = 4244.3887 kcal/mol (4239.6304 without restraints) Performing minimization step: 4793. Total energy = 4243.9961 kcal/mol (4239.2392 without restraints) Performing minimization step: 4794. Total energy = 4243.6036 kcal/mol (4238.8479 without restraints) Performing minimization step: 4795. Total energy = 4243.2116 kcal/mol (4238.4575 without restraints) Performing minimization step: 4796. Total energy = 4242.8199 kcal/mol (4238.0669 without restraints) Performing minimization step: 4797. Total energy = 4242.4288 kcal/mol (4237.6772 without restraints) Performing minimization step: 4798. Total energy = 4242.0374 kcal/mol (4237.2872 without restraints) Performing minimization step: 4799. Total energy = 4241.6463 kcal/mol (4236.8975 without restraints) Performing minimization step: 4800. Total energy = 4241.2555 kcal/mol (4236.5079 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 4240.8647 kcal/mol (4236.1184 without restraints) Performing minimization step: 4802. Total energy = 4240.4742 kcal/mol (4235.7293 without restraints) Performing minimization step: 4803. Total energy = 4240.0841 kcal/mol (4235.3405 without restraints) Performing minimization step: 4804. Total energy = 4239.6944 kcal/mol (4234.9519 without restraints) Performing minimization step: 4805. Total energy = 4239.3046 kcal/mol (4234.5636 without restraints) Performing minimization step: 4806. Total energy = 4238.9152 kcal/mol (4234.1756 without restraints) Performing minimization step: 4807. Total energy = 4238.5259 kcal/mol (4233.7876 without restraints) Performing minimization step: 4808. Total energy = 4238.1371 kcal/mol (4233.4001 without restraints) Performing minimization step: 4809. Total energy = 4237.7486 kcal/mol (4233.0130 without restraints) Performing minimization step: 4810. Total energy = 4237.3603 kcal/mol (4232.6261 without restraints) Performing minimization step: 4811. Total energy = 4236.9725 kcal/mol (4232.2395 without restraints) Performing minimization step: 4812. Total energy = 4236.5848 kcal/mol (4231.8530 without restraints) Performing minimization step: 4813. Total energy = 4236.1982 kcal/mol (4231.4669 without restraints) Performing minimization step: 4814. Total energy = 4235.8112 kcal/mol (4231.0814 without restraints) Performing minimization step: 4815. Total energy = 4235.4234 kcal/mol (4230.6958 without restraints) Performing minimization step: 4816. Total energy = 4235.0368 kcal/mol (4230.3105 without restraints) Performing minimization step: 4817. Total energy = 4234.6508 kcal/mol (4229.9258 without restraints) Performing minimization step: 4818. Total energy = 4234.2645 kcal/mol (4229.5409 without restraints) Performing minimization step: 4819. Total energy = 4233.8784 kcal/mol (4229.1560 without restraints) Performing minimization step: 4820. Total energy = 4233.4926 kcal/mol (4228.7716 without restraints) Performing minimization step: 4821. Total energy = 4233.1069 kcal/mol (4228.3873 without restraints) Performing minimization step: 4822. Total energy = 4232.7215 kcal/mol (4228.0032 without restraints) Performing minimization step: 4823. Total energy = 4232.3364 kcal/mol (4227.6195 without restraints) Performing minimization step: 4824. Total energy = 4231.9516 kcal/mol (4227.2360 without restraints) Performing minimization step: 4825. Total energy = 4231.5672 kcal/mol (4226.8530 without restraints) Performing minimization step: 4826. Total energy = 4231.1831 kcal/mol (4226.4701 without restraints) Performing minimization step: 4827. Total energy = 4230.7996 kcal/mol (4226.0881 without restraints) Performing minimization step: 4828. Total energy = 4230.4159 kcal/mol (4225.7055 without restraints) Performing minimization step: 4829. Total energy = 4230.0323 kcal/mol (4225.3233 without restraints) Performing minimization step: 4830. Total energy = 4229.6490 kcal/mol (4224.9413 without restraints) Performing minimization step: 4831. Total energy = 4229.2661 kcal/mol (4224.5598 without restraints) Performing minimization step: 4832. Total energy = 4228.8831 kcal/mol (4224.1783 without restraints) Performing minimization step: 4833. Total energy = 4228.5008 kcal/mol (4223.7973 without restraints) Performing minimization step: 4834. Total energy = 4228.1187 kcal/mol (4223.4165 without restraints) Performing minimization step: 4835. Total energy = 4227.7368 kcal/mol (4223.0358 without restraints) Performing minimization step: 4836. Total energy = 4227.3550 kcal/mol (4222.6553 without restraints) Performing minimization step: 4837. Total energy = 4226.9737 kcal/mol (4222.2753 without restraints) Performing minimization step: 4838. Total energy = 4226.5924 kcal/mol (4221.8954 without restraints) Performing minimization step: 4839. Total energy = 4226.2116 kcal/mol (4221.5160 without restraints) Performing minimization step: 4840. Total energy = 4225.8306 kcal/mol (4221.1363 without restraints) Performing minimization step: 4841. Total energy = 4225.4501 kcal/mol (4220.7571 without restraints) Performing minimization step: 4842. Total energy = 4225.0698 kcal/mol (4220.3782 without restraints) Performing minimization step: 4843. Total energy = 4224.6896 kcal/mol (4219.9993 without restraints) Performing minimization step: 4844. Total energy = 4224.3100 kcal/mol (4219.6210 without restraints) Performing minimization step: 4845. Total energy = 4223.9306 kcal/mol (4219.2430 without restraints) Performing minimization step: 4846. Total energy = 4223.5520 kcal/mol (4218.8659 without restraints) Performing minimization step: 4847. Total energy = 4223.1732 kcal/mol (4218.4882 without restraints) Performing minimization step: 4848. Total energy = 4222.7945 kcal/mol (4218.1108 without restraints) Performing minimization step: 4849. Total energy = 4222.4160 kcal/mol (4217.7337 without restraints) Performing minimization step: 4850. Total energy = 4222.0377 kcal/mol (4217.3567 without restraints) Performing minimization step: 4851. Total energy = 4221.6598 kcal/mol (4216.9801 without restraints) Performing minimization step: 4852. Total energy = 4221.2820 kcal/mol (4216.6037 without restraints) Performing minimization step: 4853. Total energy = 4220.9047 kcal/mol (4216.2277 without restraints) Performing minimization step: 4854. Total energy = 4220.5275 kcal/mol (4215.8518 without restraints) Performing minimization step: 4855. Total energy = 4220.1509 kcal/mol (4215.4765 without restraints) Performing minimization step: 4856. Total energy = 4219.7744 kcal/mol (4215.1013 without restraints) Performing minimization step: 4857. Total energy = 4219.3979 kcal/mol (4214.7262 without restraints) Performing minimization step: 4858. Total energy = 4219.0218 kcal/mol (4214.3515 without restraints) Performing minimization step: 4859. Total energy = 4218.6459 kcal/mol (4213.9769 without restraints) Performing minimization step: 4860. Total energy = 4218.2702 kcal/mol (4213.6025 without restraints) Performing minimization step: 4861. Total energy = 4217.8954 kcal/mol (4213.2292 without restraints) Performing minimization step: 4862. Total energy = 4217.5206 kcal/mol (4212.8555 without restraints) Performing minimization step: 4863. Total energy = 4217.1458 kcal/mol (4212.4821 without restraints) Performing minimization step: 4864. Total energy = 4216.7712 kcal/mol (4212.1088 without restraints) Performing minimization step: 4865. Total energy = 4216.3970 kcal/mol (4211.7359 without restraints) Performing minimization step: 4866. Total energy = 4216.0228 kcal/mol (4211.3631 without restraints) Performing minimization step: 4867. Total energy = 4215.6490 kcal/mol (4210.9907 without restraints) Performing minimization step: 4868. Total energy = 4215.2757 kcal/mol (4210.6186 without restraints) Performing minimization step: 4869. Total energy = 4214.9022 kcal/mol (4210.2464 without restraints) Performing minimization step: 4870. Total energy = 4214.5291 kcal/mol (4209.8747 without restraints) Performing minimization step: 4871. Total energy = 4214.1565 kcal/mol (4209.5035 without restraints) Performing minimization step: 4872. Total energy = 4213.7841 kcal/mol (4209.1322 without restraints) Performing minimization step: 4873. Total energy = 4213.4120 kcal/mol (4208.7618 without restraints) Performing minimization step: 4874. Total energy = 4213.0398 kcal/mol (4208.3907 without restraints) Performing minimization step: 4875. Total energy = 4212.6682 kcal/mol (4208.0204 without restraints) Performing minimization step: 4876. Total energy = 4212.2971 kcal/mol (4207.6508 without restraints) Performing minimization step: 4877. Total energy = 4211.9257 kcal/mol (4207.2805 without restraints) Performing minimization step: 4878. Total energy = 4211.5546 kcal/mol (4206.9108 without restraints) Performing minimization step: 4879. Total energy = 4211.1836 kcal/mol (4206.5411 without restraints) Performing minimization step: 4880. Total energy = 4210.8131 kcal/mol (4206.1721 without restraints) Performing minimization step: 4881. Total energy = 4210.4428 kcal/mol (4205.8029 without restraints) Performing minimization step: 4882. Total energy = 4210.0727 kcal/mol (4205.4341 without restraints) Performing minimization step: 4883. Total energy = 4209.7027 kcal/mol (4205.0655 without restraints) Performing minimization step: 4884. Total energy = 4209.3330 kcal/mol (4204.6972 without restraints) Performing minimization step: 4885. Total energy = 4208.9644 kcal/mol (4204.3298 without restraints) Performing minimization step: 4886. Total energy = 4208.5952 kcal/mol (4203.9620 without restraints) Performing minimization step: 4887. Total energy = 4208.2262 kcal/mol (4203.5943 without restraints) Performing minimization step: 4888. Total energy = 4207.8574 kcal/mol (4203.2268 without restraints) Performing minimization step: 4889. Total energy = 4207.4891 kcal/mol (4202.8599 without restraints) Performing minimization step: 4890. Total energy = 4207.1208 kcal/mol (4202.4929 without restraints) Performing minimization step: 4891. Total energy = 4206.7528 kcal/mol (4202.1261 without restraints) Performing minimization step: 4892. Total energy = 4206.3846 kcal/mol (4201.7593 without restraints) Performing minimization step: 4893. Total energy = 4206.0171 kcal/mol (4201.3931 without restraints) Performing minimization step: 4894. Total energy = 4205.6501 kcal/mol (4201.0274 without restraints) Performing minimization step: 4895. Total energy = 4205.2832 kcal/mol (4200.6619 without restraints) Performing minimization step: 4896. Total energy = 4204.9164 kcal/mol (4200.2964 without restraints) Performing minimization step: 4897. Total energy = 4204.5498 kcal/mol (4199.9311 without restraints) Performing minimization step: 4898. Total energy = 4204.1831 kcal/mol (4199.5657 without restraints) Performing minimization step: 4899. Total energy = 4203.8174 kcal/mol (4199.2013 without restraints) Performing minimization step: 4900. Total energy = 4203.4515 kcal/mol (4198.8368 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 4203.0863 kcal/mol (4198.4731 without restraints) Performing minimization step: 4902. Total energy = 4202.7218 kcal/mol (4198.1097 without restraints) Performing minimization step: 4903. Total energy = 4202.3566 kcal/mol (4197.7459 without restraints) Performing minimization step: 4904. Total energy = 4201.9920 kcal/mol (4197.3826 without restraints) Performing minimization step: 4905. Total energy = 4201.6277 kcal/mol (4197.0196 without restraints) Performing minimization step: 4906. Total energy = 4201.2638 kcal/mol (4196.6571 without restraints) Performing minimization step: 4907. Total energy = 4200.8998 kcal/mol (4196.2944 without restraints) Performing minimization step: 4908. Total energy = 4200.5359 kcal/mol (4195.9318 without restraints) Performing minimization step: 4909. Total energy = 4200.1721 kcal/mol (4195.5694 without restraints) Performing minimization step: 4910. Total energy = 4199.8093 kcal/mol (4195.2079 without restraints) Performing minimization step: 4911. Total energy = 4199.4463 kcal/mol (4194.8462 without restraints) Performing minimization step: 4912. Total energy = 4199.0834 kcal/mol (4194.4845 without restraints) Performing minimization step: 4913. Total energy = 4198.7208 kcal/mol (4194.1233 without restraints) Performing minimization step: 4914. Total energy = 4198.3585 kcal/mol (4193.7624 without restraints) Performing minimization step: 4915. Total energy = 4197.9963 kcal/mol (4193.4017 without restraints) Performing minimization step: 4916. Total energy = 4197.6343 kcal/mol (4193.0408 without restraints) Performing minimization step: 4917. Total energy = 4197.2724 kcal/mol (4192.6801 without restraints) Performing minimization step: 4918. Total energy = 4196.9104 kcal/mol (4192.3195 without restraints) Performing minimization step: 4919. Total energy = 4196.5495 kcal/mol (4191.9600 without restraints) Performing minimization step: 4920. Total energy = 4196.1890 kcal/mol (4191.6007 without restraints) Performing minimization step: 4921. Total energy = 4195.8282 kcal/mol (4191.2413 without restraints) Performing minimization step: 4922. Total energy = 4195.4678 kcal/mol (4190.8821 without restraints) Performing minimization step: 4923. Total energy = 4195.1081 kcal/mol (4190.5239 without restraints) Performing minimization step: 4924. Total energy = 4194.7482 kcal/mol (4190.1652 without restraints) Performing minimization step: 4925. Total energy = 4194.3885 kcal/mol (4189.8069 without restraints) Performing minimization step: 4926. Total energy = 4194.0296 kcal/mol (4189.4492 without restraints) Performing minimization step: 4927. Total energy = 4193.6704 kcal/mol (4189.0914 without restraints) Performing minimization step: 4928. Total energy = 4193.3113 kcal/mol (4188.7336 without restraints) Performing minimization step: 4929. Total energy = 4192.9522 kcal/mol (4188.3758 without restraints) Performing minimization step: 4930. Total energy = 4192.5937 kcal/mol (4188.0187 without restraints) Performing minimization step: 4931. Total energy = 4192.2357 kcal/mol (4187.6620 without restraints) Performing minimization step: 4932. Total energy = 4191.8777 kcal/mol (4187.3053 without restraints) Performing minimization step: 4933. Total energy = 4191.5202 kcal/mol (4186.9491 without restraints) Performing minimization step: 4934. Total energy = 4191.1626 kcal/mol (4186.5928 without restraints) Performing minimization step: 4935. Total energy = 4190.8051 kcal/mol (4186.2366 without restraints) Performing minimization step: 4936. Total energy = 4190.4478 kcal/mol (4185.8806 without restraints) Performing minimization step: 4937. Total energy = 4190.0909 kcal/mol (4185.5251 without restraints) Performing minimization step: 4938. Total energy = 4189.7342 kcal/mol (4185.1696 without restraints) Performing minimization step: 4939. Total energy = 4189.3774 kcal/mol (4184.8142 without restraints) Performing minimization step: 4940. Total energy = 4189.0216 kcal/mol (4184.4597 without restraints) Performing minimization step: 4941. Total energy = 4188.6658 kcal/mol (4184.1052 without restraints) Performing minimization step: 4942. Total energy = 4188.3103 kcal/mol (4183.7511 without restraints) Performing minimization step: 4943. Total energy = 4187.9547 kcal/mol (4183.3968 without restraints) Performing minimization step: 4944. Total energy = 4187.5993 kcal/mol (4183.0427 without restraints) Performing minimization step: 4945. Total energy = 4187.2449 kcal/mol (4182.6896 without restraints) Performing minimization step: 4946. Total energy = 4186.8899 kcal/mol (4182.3360 without restraints) Performing minimization step: 4947. Total energy = 4186.5353 kcal/mol (4181.9826 without restraints) Performing minimization step: 4948. Total energy = 4186.1809 kcal/mol (4181.6295 without restraints) Performing minimization step: 4949. Total energy = 4185.8268 kcal/mol (4181.2768 without restraints) Performing minimization step: 4950. Total energy = 4185.4728 kcal/mol (4180.9241 without restraints) Performing minimization step: 4951. Total energy = 4185.1191 kcal/mol (4180.5717 without restraints) Performing minimization step: 4952. Total energy = 4184.7660 kcal/mol (4180.2200 without restraints) Performing minimization step: 4953. Total energy = 4184.4133 kcal/mol (4179.8685 without restraints) Performing minimization step: 4954. Total energy = 4184.0605 kcal/mol (4179.5172 without restraints) Performing minimization step: 4955. Total energy = 4183.7076 kcal/mol (4179.1655 without restraints) Performing minimization step: 4956. Total energy = 4183.3553 kcal/mol (4178.8145 without restraints) Performing minimization step: 4957. Total energy = 4183.0030 kcal/mol (4178.4635 without restraints) Performing minimization step: 4958. Total energy = 4182.6513 kcal/mol (4178.1131 without restraints) Performing minimization step: 4959. Total energy = 4182.2993 kcal/mol (4177.7624 without restraints) Performing minimization step: 4960. Total energy = 4181.9479 kcal/mol (4177.4123 without restraints) Performing minimization step: 4961. Total energy = 4181.5966 kcal/mol (4177.0625 without restraints) Performing minimization step: 4962. Total energy = 4181.2457 kcal/mol (4176.7129 without restraints) Performing minimization step: 4963. Total energy = 4180.8952 kcal/mol (4176.3636 without restraints) Performing minimization step: 4964. Total energy = 4180.5449 kcal/mol (4176.0148 without restraints) Performing minimization step: 4965. Total energy = 4180.1948 kcal/mol (4175.6659 without restraints) Performing minimization step: 4966. Total energy = 4179.8450 kcal/mol (4175.3174 without restraints) Performing minimization step: 4967. Total energy = 4179.4953 kcal/mol (4174.9690 without restraints) Performing minimization step: 4968. Total energy = 4179.1455 kcal/mol (4174.6205 without restraints) Performing minimization step: 4969. Total energy = 4178.7961 kcal/mol (4174.2724 without restraints) Performing minimization step: 4970. Total energy = 4178.4468 kcal/mol (4173.9244 without restraints) Performing minimization step: 4971. Total energy = 4178.0982 kcal/mol (4173.5771 without restraints) Performing minimization step: 4972. Total energy = 4177.7497 kcal/mol (4173.2299 without restraints) Performing minimization step: 4973. Total energy = 4177.4016 kcal/mol (4172.8834 without restraints) Performing minimization step: 4974. Total energy = 4177.0534 kcal/mol (4172.5363 without restraints) Performing minimization step: 4975. Total energy = 4176.7053 kcal/mol (4172.1894 without restraints) Performing minimization step: 4976. Total energy = 4176.3573 kcal/mol (4171.8428 without restraints) Performing minimization step: 4977. Total energy = 4176.0098 kcal/mol (4171.4966 without restraints) Performing minimization step: 4978. Total energy = 4175.6623 kcal/mol (4171.1504 without restraints) Performing minimization step: 4979. Total energy = 4175.3152 kcal/mol (4170.8046 without restraints) Performing minimization step: 4980. Total energy = 4174.9685 kcal/mol (4170.4593 without restraints) Performing minimization step: 4981. Total energy = 4174.6219 kcal/mol (4170.1140 without restraints) Performing minimization step: 4982. Total energy = 4174.2755 kcal/mol (4169.7689 without restraints) Performing minimization step: 4983. Total energy = 4173.9295 kcal/mol (4169.4242 without restraints) Performing minimization step: 4984. Total energy = 4173.5834 kcal/mol (4169.0795 without restraints) Performing minimization step: 4985. Total energy = 4173.2376 kcal/mol (4168.7350 without restraints) Performing minimization step: 4986. Total energy = 4172.8924 kcal/mol (4168.3910 without restraints) Performing minimization step: 4987. Total energy = 4172.5470 kcal/mol (4168.0470 without restraints) Performing minimization step: 4988. Total energy = 4172.2024 kcal/mol (4167.7038 without restraints) Performing minimization step: 4989. Total energy = 4171.8577 kcal/mol (4167.3603 without restraints) Performing minimization step: 4990. Total energy = 4171.5130 kcal/mol (4167.0169 without restraints) Performing minimization step: 4991. Total energy = 4171.1687 kcal/mol (4166.6740 without restraints) Performing minimization step: 4992. Total energy = 4170.8253 kcal/mol (4166.3319 without restraints) Performing minimization step: 4993. Total energy = 4170.4814 kcal/mol (4165.9893 without restraints) Performing minimization step: 4994. Total energy = 4170.1378 kcal/mol (4165.6470 without restraints) Performing minimization step: 4995. Total energy = 4169.7942 kcal/mol (4165.3047 without restraints) Performing minimization step: 4996. Total energy = 4169.4508 kcal/mol (4164.9626 without restraints) Performing minimization step: 4997. Total energy = 4169.1082 kcal/mol (4164.6213 without restraints) Performing minimization step: 4998. Total energy = 4168.7653 kcal/mol (4164.2796 without restraints) Performing minimization step: 4999. Total energy = 4168.4225 kcal/mol (4163.9381 without restraints) Performing minimization step: 5000. Total energy = 4168.0802 kcal/mol (4163.5972 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d5ef7994/tmp/CPMA4_refx/CPMA4_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to CPMA4_refx.pdb DONE!