============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA.pdb ============================================================================= Atom's 895 C4 residue renamed to RG3 Atom's 894 N3 residue renamed to RG3 Atom's 893 N2 residue renamed to RG3 Atom's 892 C2 residue renamed to RG3 Atom's 891 N1 residue renamed to RG3 Atom's 890 O6 residue renamed to RG3 Atom's 889 C6 residue renamed to RG3 Atom's 888 C5 residue renamed to RG3 Atom's 887 N7 residue renamed to RG3 Atom's 886 C8 residue renamed to RG3 Atom's 885 N9 residue renamed to RG3 Atom's 884 C1' residue renamed to RG3 Atom's 883 O2' residue renamed to RG3 Atom's 882 C2' residue renamed to RG3 Atom's 881 O3' residue renamed to RG3 Atom's 880 C3' residue renamed to RG3 Atom's 879 O4' residue renamed to RG3 Atom's 878 C4' residue renamed to RG3 Atom's 877 C5' residue renamed to RG3 Atom's 876 O5' residue renamed to RG3 Atom's 875 OP2 residue renamed to RG3 Atom's 874 OP1 residue renamed to RG3 Atom's 873 P residue renamed to RG3 Missing atom added: ATOM 21 H5'1 C A 1 -4.766 -0.269 -9.160 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 1 -6.170 -0.306 -7.949 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 1 -5.455 1.683 -7.868 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 1 -8.315 1.241 -8.916 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 1 -6.095 4.314 -9.780 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 1 -8.634 3.635 -8.698 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 1 -6.992 3.426 -6.817 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 1 -7.564 1.411 -11.518 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 1 -10.170 3.367 -14.942 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 1 -10.101 5.030 -14.543 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 1 -9.055 1.310 -13.762 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 2 -8.436 4.026 -5.267 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 2 -10.239 4.034 -4.843 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 2 -9.400 6.169 -5.154 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 2 -11.739 5.527 -6.360 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 2 -9.207 7.487 -8.491 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 2 -11.698 7.818 -7.275 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 2 -9.997 8.300 -5.428 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 2 -10.062 4.226 -9.044 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 2 -13.729 8.354 -13.113 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 2 -12.590 10.498 -10.393 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 2 -13.728 10.158 -11.571 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 3 -11.874 8.952 -4.908 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 3 -12.921 9.052 -3.383 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 3 -12.826 10.897 -5.020 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 3 -15.399 9.364 -5.522 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 3 -13.364 10.939 -8.381 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 3 -15.908 11.015 -7.233 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 3 -14.391 12.556 -5.871 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 3 -13.690 7.688 -7.292 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 3 -16.035 8.940 -11.764 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 3 -14.524 5.850 -8.723 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 4 -16.095 13.359 -5.474 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 4 -17.922 13.427 -5.166 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 4 -17.982 14.383 -6.886 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 4 -19.453 11.708 -6.328 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 4 -18.548 12.695 -9.825 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 4 -20.733 11.980 -8.277 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 4 -20.403 14.450 -7.938 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 4 -17.507 10.510 -7.142 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 4 -17.934 6.110 -8.803 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 4 -18.715 6.366 -10.305 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 4 -17.127 7.847 -7.013 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 5 -22.524 13.699 -7.401 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 5 -24.016 13.082 -6.494 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 5 -24.229 12.949 -8.773 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 5 -24.598 10.510 -7.363 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 5 -22.764 10.392 -10.730 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 5 -25.097 9.490 -9.531 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 5 -25.503 11.957 -10.237 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 5 -21.050 9.828 -7.793 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 5 -22.611 3.980 -11.003 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 5 -24.964 6.425 -12.334 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 5 -24.605 4.833 -11.965 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 6 -28.546 10.903 -8.995 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 6 -29.481 10.294 -7.515 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 6 -30.298 9.089 -9.016 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 6 -28.699 7.945 -6.642 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 6 -28.833 6.047 -9.869 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 6 -29.338 5.777 -7.129 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 6 -31.396 6.621 -8.131 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 6 -26.909 7.982 -7.577 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 6 -23.230 5.269 -6.519 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 6 -23.599 3.823 -7.358 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 6 -24.504 7.557 -6.478 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 7 -28.568 7.800 -3.481 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 7 -29.889 7.664 -2.188 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 7 -27.530 8.441 -1.822 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 7 -27.264 7.612 -1.052 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 7 -27.018 11.383 -0.652 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 7 -25.504 9.091 -0.343 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 7 -25.422 9.756 -2.828 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 7 -29.590 9.268 0.015 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 7 -29.910 8.818 4.712 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 7 -28.428 9.491 5.241 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 7 -30.850 8.529 2.283 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 8 -23.150 5.135 -2.552 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 8 -23.488 5.794 -0.852 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 8 -21.868 6.124 -0.514 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 8 -22.667 4.982 0.448 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 8 -22.852 8.665 1.627 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 8 -21.592 6.224 2.270 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 8 -20.153 7.252 0.466 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 8 -25.321 6.734 0.644 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 8 -27.878 5.516 4.421 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 8 -26.826 5.913 5.712 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 8 -27.508 5.708 1.836 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 9 -18.785 4.448 1.553 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 9 -18.384 2.660 1.276 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 9 -17.681 3.623 3.351 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 9 -20.101 1.801 3.724 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 9 -19.829 4.804 5.869 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 9 -19.824 2.164 6.121 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 9 -17.358 2.830 5.465 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 9 -21.825 3.992 3.018 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 9 -26.199 3.608 5.182 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 9 -26.676 3.655 6.821 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 9 -22.913 3.936 9.712 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 10 -19.123 -2.785 5.664 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 10 -20.478 -1.713 6.334 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 10 -20.519 -2.502 7.854 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 10 -21.825 -2.858 7.240 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 10 -21.882 0.475 9.016 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 10 -22.927 -2.087 9.197 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 10 -20.595 -2.126 10.240 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 10 -21.851 0.025 5.683 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 10 -26.517 1.075 7.728 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 10 -23.666 0.703 4.148 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 11 -21.872 -4.089 11.251 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 11 -22.701 -5.743 11.162 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 11 -23.866 -4.469 12.579 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 11 -25.216 -5.480 10.113 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 11 -26.261 -2.147 11.631 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 11 -27.293 -4.605 11.177 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 11 -25.917 -4.889 13.364 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 11 -24.485 -3.199 8.869 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 11 -29.295 -1.471 7.904 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 11 -25.122 -2.791 6.515 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 12 -27.131 -6.750 13.064 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 12 -27.285 -8.597 13.102 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 12 -29.320 -7.361 13.433 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 12 -29.337 -8.282 10.464 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 12 -30.696 -4.978 11.562 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 12 -31.614 -7.265 10.498 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 12 -31.307 -7.644 13.167 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 12 -28.074 -6.068 9.935 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 12 -28.611 -4.386 5.549 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 12 -30.241 -3.865 5.559 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 12 -27.198 -5.514 7.445 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 13 -32.977 -9.496 11.895 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 13 -33.448 -11.211 11.374 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 13 -35.195 -9.803 11.092 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 13 -33.865 -10.707 8.450 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 13 -35.616 -7.481 8.602 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 13 -35.811 -9.681 7.347 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 13 -36.997 -9.991 9.691 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 13 -32.034 -8.617 8.838 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 13 -30.372 -7.449 4.380 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 13 -31.148 -6.840 2.986 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 13 -35.822 -6.332 3.687 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 14 -37.508 -11.482 8.430 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 14 -37.802 -13.127 7.631 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 14 -39.094 -11.462 6.710 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 14 -37.044 -12.627 4.867 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 14 -37.893 -8.946 4.580 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 14 -37.846 -11.313 3.093 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 14 -40.014 -11.253 4.374 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 14 -34.891 -10.895 5.827 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 14 -34.095 -8.080 -0.362 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 14 -37.647 -7.725 0.379 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 14 -36.431 -7.926 -0.752 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 15 -40.541 -13.322 2.395 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 15 -40.545 -15.082 1.813 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 15 -40.831 -13.812 0.022 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 15 -38.051 -15.200 0.304 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 15 -38.520 -12.033 -1.705 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 15 -37.667 -14.600 -2.019 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 15 -40.238 -14.639 -2.240 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 15 -36.957 -13.328 1.566 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 15 -32.258 -12.426 0.540 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 15 -31.477 -11.834 -0.859 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 15 -34.592 -10.985 -4.350 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 16 -38.847 -16.555 -3.058 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 16 -38.889 -18.403 -3.190 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 16 -37.845 -17.219 -4.966 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 16 -35.724 -18.553 -3.247 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 16 -35.178 -15.172 -5.028 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 16 -34.118 -17.771 -4.897 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 16 -36.103 -17.874 -6.488 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 16 -35.596 -16.106 -1.415 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 16 -29.335 -13.926 -3.197 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 16 -31.040 -14.564 -6.355 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 16 -29.614 -14.503 -5.481 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 17 -35.383 -19.326 -6.968 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 17 -34.336 -20.846 -7.131 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 17 -33.187 -19.524 -8.206 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 17 -32.183 -20.590 -5.405 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 17 -30.790 -17.491 -7.005 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 17 -29.982 -19.888 -5.965 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 17 -30.614 -20.328 -8.368 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 17 -33.088 -18.381 -4.124 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 17 -27.014 -15.823 -2.218 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 17 -26.691 -16.439 -5.797 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 17 -25.976 -16.343 -4.287 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 18 -29.539 -21.335 -7.641 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 18 -28.969 -23.096 -7.746 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 18 -27.216 -21.578 -7.781 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 18 -27.639 -22.707 -4.853 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 18 -25.967 -19.354 -5.748 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 18 -25.499 -21.731 -4.294 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 18 -24.802 -22.240 -6.625 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 18 -29.104 -20.387 -4.573 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 18 -29.470 -18.551 -0.230 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 18 -27.878 -17.995 0.063 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 18 -30.473 -19.736 -2.341 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 19 -24.310 -23.839 -6.274 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 19 -23.666 -25.210 -5.207 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 19 -22.051 -23.816 -5.233 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 19 -23.238 -24.730 -2.664 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 19 -21.930 -21.216 -2.834 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 19 -21.571 -23.570 -1.454 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 19 -20.115 -23.720 -3.460 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 19 -25.105 -22.656 -3.035 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 19 -23.929 -20.693 1.634 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 19 -26.923 -22.446 -1.374 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 20 -19.789 -24.837 -2.067 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 20 -19.176 -26.583 -1.960 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 20 -18.284 -25.081 -0.389 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 20 -20.497 -26.790 0.960 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 20 -19.565 -23.231 2.046 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 20 -19.652 -25.777 3.064 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 20 -17.462 -25.624 1.587 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 20 -22.022 -24.568 0.102 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 20 -26.097 -23.867 2.389 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 20 -25.560 -23.391 3.943 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 20 -24.710 -24.555 0.273 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 21 -18.371 -27.071 3.434 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 21 -17.831 -28.791 3.864 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 21 -18.240 -27.521 5.718 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 21 -20.716 -29.345 4.878 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 21 -20.985 -26.267 7.092 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 21 -21.767 -29.005 6.908 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 21 -19.536 -29.046 7.882 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 21 -21.885 -27.175 3.614 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 21 -26.742 -26.730 4.077 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 21 -27.746 -26.411 5.422 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 21 -25.206 -26.012 9.421 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 22 -19.899 -30.481 8.031 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 22 -20.095 -32.306 8.281 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 22 -21.208 -31.252 9.889 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 22 -23.039 -32.827 8.094 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 22 -23.937 -29.539 10.137 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 22 -24.715 -32.229 9.912 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 22 -22.586 -32.193 11.363 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 22 -23.246 -30.373 6.803 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 22 -29.806 -28.666 7.858 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 22 -28.463 -29.305 11.185 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 22 -29.776 -29.280 10.149 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 23 -24.156 -33.711 11.859 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 23 -23.300 -35.244 12.448 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 23 -25.303 -33.940 13.398 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 23 -26.625 -35.891 11.449 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 23 -27.802 -32.180 12.073 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 23 -28.759 -34.833 12.262 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 23 -27.474 -34.422 14.420 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 23 -26.256 -33.609 9.367 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 23 -32.878 -32.240 8.223 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 23 -32.537 -32.218 11.852 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 23 -33.495 -32.464 10.503 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 24 -29.395 -36.710 14.725 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 24 -29.402 -38.563 14.715 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 24 -31.486 -37.266 14.731 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 24 -31.202 -38.631 12.195 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 24 -32.571 -35.108 12.149 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 24 -33.383 -37.613 11.617 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 24 -33.648 -37.310 14.187 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 24 -29.521 -36.104 11.167 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 24 -32.870 -35.511 7.240 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 24 -28.609 -36.034 8.874 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 25 -34.665 -41.840 13.114 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 25 -34.353 -41.150 11.423 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 25 -36.205 -40.957 11.202 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 25 -33.966 -38.967 10.664 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 25 -36.871 -37.393 11.607 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 25 -34.064 -37.428 10.460 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 25 -34.614 -37.401 9.210 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 25 -34.113 -36.303 12.012 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 25 -38.163 -34.847 14.921 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 25 -33.943 -34.171 13.243 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 26 -37.320 -38.630 5.817 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 26 -36.952 -37.120 6.828 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 26 -39.105 -37.121 6.149 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 26 -38.766 -35.829 5.931 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 26 -40.900 -36.467 8.930 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 26 -41.021 -35.263 6.531 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 26 -41.456 -37.815 6.189 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 26 -37.516 -35.683 8.450 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 26 -36.784 -31.475 10.453 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 26 -38.380 -30.954 10.788 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 26 -35.945 -33.659 9.271 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 27 -40.350 -33.743 4.192 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 27 -39.774 -34.433 5.812 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 27 -41.124 -32.539 4.634 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 27 -41.463 -31.969 5.660 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 27 -43.922 -32.441 3.157 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 27 -42.842 -31.060 5.681 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 27 -42.439 -29.984 4.824 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 27 -43.754 -34.535 6.890 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 27 -49.675 -33.349 3.640 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 27 -47.164 -31.582 1.674 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 27 -48.751 -31.714 2.189 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 28 -40.315 -30.689 6.114 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 28 -40.510 -28.850 5.987 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 28 -40.061 -29.368 8.095 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 28 -37.747 -28.059 6.437 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 28 -36.577 -30.130 8.875 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 28 -36.203 -27.885 6.989 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 28 -36.486 -27.192 8.505 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 28 -36.968 -30.125 5.744 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 28 -32.865 -31.733 4.361 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 28 -32.069 -31.986 5.856 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 28 -35.347 -31.047 3.877 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 29 -37.177 -27.281 10.352 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 29 -38.115 -25.841 11.046 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 29 -36.241 -27.058 12.194 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 29 -34.761 -25.094 10.121 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 29 -33.538 -28.524 11.512 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 29 -32.693 -25.834 11.266 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 29 -34.183 -25.894 13.354 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 29 -35.095 -27.581 8.726 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 29 -32.112 -28.718 5.243 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 29 -30.663 -29.038 6.098 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 29 -34.455 -27.960 6.136 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 30 -33.074 -24.928 13.178 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 30 -32.777 -23.189 13.746 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 30 -30.909 -24.404 14.093 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 30 -30.736 -22.514 11.587 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 30 -28.648 -25.683 12.068 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 30 -28.384 -22.961 11.519 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 30 -28.615 -23.208 14.030 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 30 -31.540 -24.722 10.295 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 30 -27.190 -25.454 7.551 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 30 -31.728 -24.816 7.836 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 31 -27.388 -20.949 14.109 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 31 -27.211 -19.233 13.434 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 31 -25.231 -20.389 13.489 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 31 -26.109 -19.639 10.786 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 31 -24.469 -22.907 11.092 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 31 -23.995 -20.532 9.999 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 31 -23.317 -20.133 12.493 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 31 -27.952 -22.178 10.545 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 31 -24.761 -23.470 4.604 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 31 -22.081 -22.788 6.980 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 31 -22.642 -22.761 5.404 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 32 -22.618 -18.704 11.334 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 32 -22.284 -16.904 11.047 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 32 -20.680 -18.091 10.032 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 32 -22.848 -16.882 8.105 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 32 -20.866 -19.981 7.244 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 32 -21.434 -17.429 6.272 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 32 -19.468 -17.230 7.876 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 32 -24.372 -19.100 8.217 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 32 -26.656 -20.395 4.079 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 32 -26.077 -20.945 2.569 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 32 -21.325 -21.030 2.465 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 33 -19.967 -16.080 6.470 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 33 -19.335 -14.365 6.165 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 33 -18.840 -16.140 4.585 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 33 -20.999 -14.397 3.385 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 33 -20.855 -18.210 2.802 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 33 -20.867 -15.767 1.405 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 33 -18.496 -16.216 2.086 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 33 -23.141 -16.366 4.826 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 33 -25.933 -18.781 -0.958 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 33 -22.335 -18.972 -1.508 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 33 -23.876 -18.808 -2.139 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 34 -18.531 -15.260 0.495 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 34 -17.931 -13.865 -0.568 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 34 -18.728 -15.690 -1.773 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 34 -20.234 -13.176 -2.100 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 34 -22.168 -16.443 -2.083 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 34 -21.650 -14.130 -3.669 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 34 -19.799 -15.797 -4.034 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 34 -22.196 -14.831 0.724 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 34 -26.692 -15.131 1.657 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 34 -27.324 -15.640 0.150 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 34 -24.260 -14.394 2.295 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 35 -20.475 -12.741 -5.092 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 35 -19.947 -14.510 -5.251 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 35 -20.622 -14.382 -7.050 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 35 -21.017 -12.713 -7.712 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 35 -21.321 -16.104 -8.475 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 35 -21.397 -13.820 -9.591 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 35 -18.987 -14.629 -9.491 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 35 -22.519 -15.188 -5.577 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 35 -27.254 -15.033 -6.819 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 35 -28.051 -15.096 -8.328 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 35 -24.947 -15.399 -11.915 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 36 -21.637 -11.313 -8.870 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 36 -20.881 -11.116 -10.551 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 36 -22.620 -10.610 -11.129 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 36 -23.148 -8.780 -9.351 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 36 -24.816 -10.289 -11.678 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 36 -24.743 -8.228 -10.157 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 36 -23.854 -7.733 -12.146 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 36 -23.534 -10.681 -8.156 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 36 -27.447 -12.512 -6.067 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 36 -28.957 -13.010 -6.691 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 36 -29.032 -12.757 -11.439 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 37 -24.476 -6.817 -10.827 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 37 -23.915 -5.986 -12.385 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 37 -25.903 -5.513 -12.465 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 37 -23.691 -3.422 -12.464 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 37 -27.067 -2.547 -11.070 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 37 -25.305 -1.763 -12.996 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 37 -26.678 -3.623 -14.001 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 37 -23.825 -3.491 -9.448 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 37 -25.278 3.181 -8.888 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 37 -27.675 1.901 -11.316 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 37 -26.741 3.170 -10.755 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 38 -26.349 -2.416 -15.178 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 38 -25.746 -2.070 -16.896 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 38 -27.138 -0.415 -16.281 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 38 -24.059 0.268 -16.178 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 38 -26.535 2.082 -14.055 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 38 -24.517 2.532 -15.899 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 38 -26.642 2.137 -17.173 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 38 -24.073 -0.474 -13.715 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 38 -20.976 1.361 -10.671 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 38 -21.526 2.976 -10.527 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 38 -21.978 -0.637 -12.038 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 39 -24.954 3.589 -18.800 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 39 -23.595 3.667 -20.056 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 39 -24.153 5.693 -18.912 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 39 -21.452 4.894 -18.318 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 39 -23.815 6.391 -15.557 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 39 -21.414 7.016 -16.983 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 39 -23.413 7.623 -18.550 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 39 -22.448 3.162 -15.616 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 39 -19.350 7.364 -11.156 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 39 -21.163 9.573 -13.421 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 39 -19.859 9.317 -12.403 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 40 -21.865 8.920 -19.018 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 40 -20.810 9.593 -20.385 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 40 -21.244 10.973 -18.453 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 40 -18.407 9.930 -18.265 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 40 -20.577 10.469 -15.150 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 40 -18.169 11.321 -16.284 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 40 -20.000 12.771 -17.271 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 40 -19.666 7.501 -16.925 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 40 -16.369 5.527 -13.884 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 40 -15.620 6.111 -12.465 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 40 -16.931 10.583 -11.530 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 41 -16.866 13.947 -18.944 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 41 -15.648 12.777 -18.179 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 41 -15.677 14.306 -16.781 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 41 -14.364 12.736 -16.725 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 41 -16.641 12.358 -13.863 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 41 -14.141 12.973 -14.375 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 41 -15.501 15.129 -14.612 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 41 -16.502 10.376 -16.713 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 41 -14.697 6.187 -15.534 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 41 -14.068 6.493 -13.972 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 41 -15.864 7.814 -17.222 1.00 0.00 H Missing atom added: ATOM 24 H5'1 RG3 A 42 -13.721 15.487 -14.260 1.00 0.00 H Missing atom added: ATOM 25 H5'2 RG3 A 42 -11.891 15.747 -14.383 1.00 0.00 H Missing atom added: ATOM 26 H4' RG3 A 42 -11.908 15.288 -12.453 1.00 0.00 H Missing atom added: ATOM 27 H3' RG3 A 42 -10.376 13.808 -14.697 1.00 0.00 H Missing atom added: ATOM 30 H1' RG3 A 42 -11.189 12.018 -11.516 1.00 0.00 H Missing atom added: ATOM 28 H2' RG3 A 42 -9.048 12.735 -13.042 1.00 0.00 H Missing atom added: ATOM 29 HO'2 RG3 A 42 -9.544 14.701 -11.514 1.00 0.00 H Missing atom added: ATOM 31 H8 RG3 A 42 -12.157 11.862 -15.270 1.00 0.00 H Missing atom added: ATOM 34 H1 RG3 A 42 -9.140 6.256 -12.713 1.00 0.00 H Missing atom added: ATOM 32 H21 RG3 A 42 -8.829 8.769 -10.090 1.00 0.00 H Missing atom added: ATOM 33 H22 RG3 A 42 -8.216 7.416 -10.860 1.00 0.00 H Missing atom added: ATOM 35 H3T RG3 A 42 -9.697 15.727 -12.833 1.00 0.00 H Missing atom added: ATOM 3 OP3 C A 1 -5.411 -2.837 -10.640 1.00 0.00 O Number of atoms: 1352 Number of residues: 42 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 1456 Number of angles built: 2602 Number of dihedrals built: 3955 Number of impropers built: 286 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- Atom's 536 C6 residue renamed to RC3 Atom's 535 C5 residue renamed to RC3 Atom's 534 N4 residue renamed to RC3 Atom's 533 C4 residue renamed to RC3 Atom's 532 N3 residue renamed to RC3 Atom's 531 O2 residue renamed to RC3 Atom's 530 C2 residue renamed to RC3 Atom's 529 N1 residue renamed to RC3 Atom's 528 C1' residue renamed to RC3 Atom's 527 O2' residue renamed to RC3 Atom's 526 C2' residue renamed to RC3 Atom's 525 O3' residue renamed to RC3 Atom's 524 C3' residue renamed to RC3 Atom's 523 O4' residue renamed to RC3 Atom's 522 C4' residue renamed to RC3 Atom's 521 C5' residue renamed to RC3 Atom's 520 O5' residue renamed to RC3 Atom's 519 OP2 residue renamed to RC3 Atom's 518 OP1 residue renamed to RC3 Atom's 517 P residue renamed to RC3 Missing atom added: ATOM 24 H5'1 G B 1 -32.270 22.169 20.930 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 1 -32.918 20.574 20.245 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 1 -34.670 21.456 21.029 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 1 -34.372 20.547 18.211 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 1 -36.663 23.493 19.005 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 1 -36.779 20.910 17.992 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 1 -36.736 20.688 20.590 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 1 -33.515 23.348 17.214 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 1 -38.936 23.802 13.027 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 1 -40.326 22.857 16.261 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 1 -40.422 22.817 14.591 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 2 -37.711 18.097 19.224 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 2 -37.102 16.347 19.166 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 2 -39.342 17.178 18.429 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 2 -37.871 16.577 16.035 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 2 -40.139 19.732 16.256 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 2 -40.061 17.311 14.951 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 2 -41.045 16.761 17.308 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 2 -36.910 19.403 16.301 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 2 -35.222 21.345 12.357 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 2 -36.629 21.478 11.391 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 2 -34.917 20.318 14.747 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 3 -41.213 15.456 15.489 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 3 -41.428 13.619 15.356 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 3 -42.781 14.837 13.909 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 3 -40.224 13.750 12.430 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 3 -42.105 16.868 11.347 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 3 -41.343 14.424 10.357 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 3 -43.511 14.132 11.872 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 3 -39.206 16.139 13.233 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 3 -35.556 17.877 10.787 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 3 -36.282 18.276 9.289 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 3 -36.611 16.796 12.928 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 4 -42.976 13.082 10.306 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 4 -43.147 11.444 9.457 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 4 -43.424 13.019 7.937 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 4 -40.607 11.610 7.813 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 4 -41.292 15.066 6.418 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 4 -40.330 12.618 5.636 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 4 -42.925 12.511 5.583 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 4 -39.928 13.746 9.401 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 4 -36.524 15.785 6.037 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 4 -37.607 14.106 10.171 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 5 -41.828 10.296 3.850 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 5 -40.871 8.730 3.599 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 5 -40.682 10.316 1.891 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 5 -38.211 9.571 3.013 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 5 -38.766 13.273 2.118 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 5 -37.177 11.101 1.410 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 5 -39.427 10.834 0.171 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 5 -38.392 11.307 5.213 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 5 -32.468 14.439 3.716 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 5 -34.460 14.703 0.676 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 5 -32.955 14.610 1.402 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 6 -36.009 9.880 1.737 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 6 -36.321 9.797 -0.087 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 6 -34.500 10.305 -0.289 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 6 -33.385 8.531 1.261 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 6 -32.385 11.173 -0.318 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 6 -31.635 8.992 0.801 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 6 -31.866 8.675 -1.398 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 6 -34.543 9.893 2.545 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 6 -28.878 13.083 4.265 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 6 -28.990 13.322 0.630 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 6 -28.087 13.176 2.031 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 7 -30.790 7.348 -1.253 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 7 -30.811 5.875 -2.379 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 7 -28.730 6.407 -2.229 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 7 -29.625 3.735 -0.922 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 7 -26.486 5.685 0.160 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 7 -27.241 3.174 -0.822 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 7 -27.006 4.733 -2.850 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 7 -29.804 5.119 1.630 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 7 -28.361 2.466 5.486 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 7 -26.849 1.809 5.930 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 7 -23.527 2.744 2.659 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 8 -26.898 2.023 -3.499 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 8 -27.671 0.555 -4.325 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 8 -25.493 0.310 -3.294 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 8 -27.472 -1.276 -1.864 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 8 -24.827 0.626 0.145 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 8 -25.740 -1.980 -0.364 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 8 -24.132 -1.369 -2.218 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 8 -28.511 1.047 -0.206 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 8 -29.626 -0.007 4.441 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 8 -28.690 -0.584 5.748 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 8 -24.170 -1.291 4.461 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 9 -24.156 -3.523 -2.756 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 9 -24.325 -4.864 -4.024 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 9 -22.665 -4.901 -2.151 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 9 -25.058 -6.591 -1.279 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 9 -23.241 -4.430 1.221 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 9 -23.876 -7.054 0.766 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 9 -21.760 -6.529 -0.615 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 9 -26.486 -4.789 -0.469 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 9 -29.247 -4.236 3.473 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 9 -28.868 -4.048 5.128 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 9 -24.167 -3.879 5.816 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 10 -22.250 -10.033 -3.892 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 10 -22.360 -8.229 -4.302 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 10 -22.575 -10.175 -5.924 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 10 -25.439 -9.497 -4.974 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 10 -24.392 -13.066 -5.566 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 10 -26.242 -11.246 -6.420 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 10 -24.074 -10.804 -7.753 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 10 -24.454 -11.238 -2.820 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 10 -27.820 -12.947 0.017 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 10 -28.693 -13.973 -1.039 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 10 -25.749 -11.414 -0.465 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 11 -26.762 -9.610 -8.848 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 11 -27.664 -7.991 -8.865 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 11 -29.142 -9.487 -9.449 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 11 -29.605 -7.875 -6.952 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 11 -30.892 -11.432 -7.143 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 11 -31.788 -8.794 -6.781 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 11 -31.534 -9.193 -9.299 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 11 -28.179 -10.275 -5.596 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 11 -32.258 -11.491 -2.611 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 11 -27.813 -10.473 -3.161 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 12 -32.989 -7.186 -8.926 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 12 -33.360 -5.425 -8.482 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 12 -35.136 -6.272 -7.927 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 12 -33.245 -5.054 -5.739 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 12 -35.852 -7.623 -4.919 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 12 -35.021 -5.126 -4.184 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 12 -36.591 -4.853 -6.111 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 12 -32.200 -7.135 -5.476 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 12 -30.088 -8.450 -1.472 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 12 -31.422 -8.758 -0.445 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 12 -30.038 -7.735 -3.991 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 13 -36.608 -3.146 -5.181 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 13 -36.524 -1.295 -5.180 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 13 -37.934 -2.095 -3.544 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 13 -35.148 -1.269 -2.353 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 13 -37.492 -3.887 -0.804 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 13 -36.118 -1.518 -0.170 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 13 -38.269 -0.812 -1.229 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 13 -34.465 -3.744 -2.761 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 13 -34.034 -5.434 2.136 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 13 -32.321 -4.758 -2.070 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 14 -37.532 -0.296 0.054 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 14 -38.147 1.447 0.172 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 14 -38.313 -0.040 2.098 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 14 -35.473 1.403 2.235 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 14 -36.802 -2.097 3.758 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 14 -35.183 0.479 4.412 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 14 -37.377 1.052 4.854 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 14 -34.670 -1.524 1.096 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 14 -31.780 -4.266 6.616 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 14 -35.027 -3.072 7.763 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 14 -33.414 -3.374 8.086 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 15 -38.027 1.438 5.393 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 15 -37.840 2.882 6.539 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 15 -37.816 1.241 7.875 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 15 -35.220 2.919 7.444 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 15 -35.125 -0.672 8.657 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 15 -34.334 1.859 9.419 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 15 -36.774 1.633 10.142 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 15 -34.298 1.128 5.483 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 15 -29.516 0.076 5.334 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 15 -28.478 -0.722 6.431 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 15 -30.791 -2.002 10.383 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 16 -35.429 3.325 11.933 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 16 -35.102 5.024 12.600 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 16 -33.914 3.217 13.603 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 16 -32.039 4.879 11.937 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 16 -31.547 1.136 12.225 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 16 -30.274 3.394 12.812 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 16 -32.027 2.932 14.715 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 16 -32.965 3.125 9.517 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 16 -29.359 2.828 6.211 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 16 -27.781 2.178 6.286 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 16 -26.778 0.566 10.645 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U B 17 -29.866 5.068 15.860 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U B 17 -28.865 6.627 15.909 1.00 0.00 H Missing atom added: ATOM 23 H4' U B 17 -27.474 4.951 16.244 1.00 0.00 H Missing atom added: ATOM 24 H3' U B 17 -26.982 6.794 14.005 1.00 0.00 H Missing atom added: ATOM 27 H1' U B 17 -26.018 3.210 13.538 1.00 0.00 H Missing atom added: ATOM 25 H2' U B 17 -24.862 5.536 13.712 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U B 17 -25.380 4.759 16.198 1.00 0.00 H Missing atom added: ATOM 29 H6 U B 17 -28.777 4.934 12.434 1.00 0.00 H Missing atom added: ATOM 30 H3 U B 17 -25.157 4.388 8.758 1.00 0.00 H Missing atom added: ATOM 28 H5 U B 17 -29.405 5.484 10.116 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 18 -23.835 7.252 15.568 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 18 -23.471 9.064 15.689 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 18 -21.894 8.231 14.423 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 18 -24.246 9.732 12.883 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 18 -21.887 7.240 11.267 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 18 -22.867 9.848 10.961 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 18 -20.937 10.012 12.563 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 18 -25.499 6.999 12.326 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 18 -24.492 6.924 5.535 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 18 -21.318 8.037 6.939 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 18 -22.406 8.045 5.668 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 19 -21.221 12.388 12.032 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 19 -21.847 14.127 12.155 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 19 -20.490 13.366 10.253 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 19 -23.158 13.984 9.360 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 19 -21.392 10.856 7.981 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 19 -22.393 13.293 7.142 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 19 -20.044 13.713 8.209 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 19 -24.019 10.996 10.361 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 19 -26.586 10.003 4.070 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 19 -23.182 11.180 3.517 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 19 -24.764 11.066 2.986 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 20 -21.202 16.392 6.276 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 20 -22.196 17.955 6.360 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 20 -21.965 17.147 4.225 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 20 -24.741 17.223 5.187 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 20 -23.856 14.363 3.069 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 20 -25.391 16.529 2.954 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 20 -23.033 17.496 2.365 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 20 -24.314 14.599 6.396 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 20 -28.381 12.414 7.403 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 20 -29.092 12.242 5.855 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 20 -26.108 13.517 8.093 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C B 21 -25.180 18.494 1.639 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C B 21 -25.506 20.318 1.570 1.00 0.00 H Missing atom added: ATOM 23 H4' C B 21 -26.797 18.984 0.084 1.00 0.00 H Missing atom added: ATOM 24 H3' C B 21 -28.509 19.718 2.581 1.00 0.00 H Missing atom added: ATOM 27 H1' C B 21 -28.986 16.482 0.662 1.00 0.00 H Missing atom added: ATOM 25 H2' C B 21 -30.364 18.705 1.256 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C B 21 -28.876 19.334 -0.819 1.00 0.00 H Missing atom added: ATOM 30 H6 C B 21 -27.568 17.485 3.681 1.00 0.00 H Missing atom added: ATOM 28 H41 C B 21 -30.244 15.683 7.136 1.00 0.00 H Missing atom added: ATOM 29 H42 C B 21 -31.619 15.131 6.279 1.00 0.00 H Missing atom added: ATOM 31 H5 C B 21 -28.083 16.872 6.256 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A B 22 -30.617 20.694 -0.364 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A B 22 -31.007 22.503 -0.477 1.00 0.00 H Missing atom added: ATOM 25 H4' A B 22 -32.613 20.750 -1.111 1.00 0.00 H Missing atom added: ATOM 26 H3' A B 22 -33.455 21.685 1.649 1.00 0.00 H Missing atom added: ATOM 29 H1' A B 22 -33.726 17.977 0.432 1.00 0.00 H Missing atom added: ATOM 27 H2' A B 22 -35.369 20.074 1.246 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A B 22 -34.750 20.546 -1.266 1.00 0.00 H Missing atom added: ATOM 30 H8 A B 22 -31.529 19.417 2.887 1.00 0.00 H Missing atom added: ATOM 31 H61 A B 22 -33.612 17.570 6.919 1.00 0.00 H Missing atom added: ATOM 32 H62 A B 22 -35.080 16.737 7.177 1.00 0.00 H Missing atom added: ATOM 33 H2 A B 22 -37.550 16.287 3.141 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 23 -36.628 22.042 -1.028 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 23 -37.801 23.215 -0.203 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 23 -39.144 21.838 -0.488 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 23 -38.210 22.936 2.288 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 23 -39.781 19.630 2.133 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 23 -40.112 21.980 3.298 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 23 -41.202 22.136 0.965 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 23 -36.201 21.151 2.589 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 23 -38.815 18.300 8.256 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 23 -41.575 18.359 5.877 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 23 -41.048 18.410 7.464 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G B 24 -42.234 23.173 2.918 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G B 24 -42.996 24.733 2.272 1.00 0.00 H Missing atom added: ATOM 26 H4' G B 24 -43.887 22.949 3.896 1.00 0.00 H Missing atom added: ATOM 27 H3' G B 24 -42.427 24.889 5.755 1.00 0.00 H Missing atom added: ATOM 30 H1' G B 24 -42.513 20.973 6.200 1.00 0.00 H Missing atom added: ATOM 28 H2' G B 24 -43.236 23.341 7.565 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G B 24 -45.168 22.853 5.980 1.00 0.00 H Missing atom added: ATOM 31 H8 G B 24 -39.907 23.011 5.249 1.00 0.00 H Missing atom added: ATOM 34 H1 G B 24 -39.111 20.505 11.576 1.00 0.00 H Missing atom added: ATOM 32 H21 G B 24 -42.670 20.138 10.872 1.00 0.00 H Missing atom added: ATOM 33 H22 G B 24 -41.441 20.334 11.991 1.00 0.00 H Missing atom added: ATOM 21 H5'1 RC3 B 25 -46.222 24.180 8.071 1.00 0.00 H Missing atom added: ATOM 22 H5'2 RC3 B 25 -46.529 25.830 8.857 1.00 0.00 H Missing atom added: ATOM 23 H4' RC3 B 25 -46.791 24.076 10.311 1.00 0.00 H Missing atom added: ATOM 24 H3' RC3 B 25 -44.626 25.924 11.041 1.00 0.00 H Missing atom added: ATOM 27 H1' RC3 B 25 -43.996 22.374 11.710 1.00 0.00 H Missing atom added: ATOM 25 H2' RC3 B 25 -44.381 24.621 13.073 1.00 0.00 H Missing atom added: ATOM 26 HO'2 RC3 B 25 -46.828 23.915 12.480 1.00 0.00 H Missing atom added: ATOM 30 H6 RC3 B 25 -43.034 24.790 9.267 1.00 0.00 H Missing atom added: ATOM 28 H41 RC3 B 25 -38.399 25.512 9.859 1.00 0.00 H Missing atom added: ATOM 29 H42 RC3 B 25 -38.094 24.707 11.340 1.00 0.00 H Missing atom added: ATOM 31 H5 RC3 B 25 -40.640 25.790 8.531 1.00 0.00 H Missing atom added: ATOM 32 H3T RC3 B 25 -46.263 25.363 12.618 1.00 0.00 H Missing atom added: ATOM 898 OP3 G B 1 -29.790 22.566 18.811 1.00 0.00 O Number of atoms: 809 Number of residues: 25 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 872 Number of angles built: 1557 Number of dihedrals built: 2366 Number of impropers built: 172 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 2327393 Number of van der Waals pairs: 301776 Number of H-bonds built: 86 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 24 Number of molecules (chains) read: 2 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 107621936.9433 kcal/mol (106111685.6294 without restraints) Performing minimization step: 2. Total energy = 95616374.8644 kcal/mol (94288470.7978 without restraints) Performing minimization step: 3. Total energy = 85053865.6372 kcal/mol (83884818.9222 without restraints) Performing minimization step: 4. Total energy = 75749342.4202 kcal/mol (74718875.3346 without restraints) Performing minimization step: 5. Total energy = 67542934.3423 kcal/mol (66633517.0666 without restraints) Performing minimization step: 6. Total energy = 60296340.6578 kcal/mol (59492797.6572 without restraints) Performing minimization step: 7. Total energy = 53889754.3085 kcal/mol (53178930.0855 without restraints) Performing minimization step: 8. Total energy = 48219247.5309 kcal/mol (47589722.3504 without restraints) Performing minimization step: 9. Total energy = 43194546.6817 kcal/mol (42636394.4276 without restraints) Performing minimization step: 10. Total energy = 38737135.4637 kcal/mol (38241717.0733 without restraints) Performing minimization step: 11. Total energy = 34778635.6806 kcal/mol (34338422.6691 without restraints) Performing minimization step: 12. Total energy = 31259422.8937 kcal/mol (30867846.3681 without restraints) Performing minimization step: 13. Total energy = 28127441.2059 kcal/mol (27778762.5029 without restraints) Performing minimization step: 14. Total energy = 25337187.1029 kcal/mol (25026386.7996 without restraints) Performing minimization step: 15. Total energy = 22848837.0312 kcal/mol (22571519.5882 without restraints) Performing minimization step: 16. Total energy = 20627497.3651 kcal/mol (20379809.0909 without restraints) Performing minimization step: 17. Total energy = 18642558.7324 kcal/mol (18421117.1134 without restraints) Performing minimization step: 18. Total energy = 16867139.4499 kcal/mol (16668972.1941 without restraints) Performing minimization step: 19. Total energy = 15277605.1530 kcal/mol (15100097.5436 without restraints) Performing minimization step: 20. Total energy = 13853153.6630 kcal/mol (13694003.0326 without restraints) Performing minimization step: 21. Total energy = 12575455.7862 kcal/mol (12432632.1004 without restraints) Performing minimization step: 22. Total energy = 11428344.1294 kcal/mol (11300055.8175 without restraints) Performing minimization step: 23. Total energy = 10397543.1886 kcal/mol (10282207.4888 without restraints) Performing minimization step: 24. Total energy = 9470434.9597 kcal/mol (9366652.1513 without restraints) Performing minimization step: 25. Total energy = 8635855.1608 kcal/mol (8542386.1487 without restraints) Performing minimization step: 26. Total energy = 7883915.8653 kcal/mol (7799662.6582 without restraints) Performing minimization step: 27. Total energy = 7205850.9493 kcal/mol (7129839.6395 without restraints) Performing minimization step: 28. Total energy = 6593881.2711 kcal/mol (6525247.1789 without restraints) Performing minimization step: 29. Total energy = 6041096.9356 kcal/mol (5979071.6289 without restraints) Performing minimization step: 30. Total energy = 5541354.3690 kcal/mol (5485254.3103 without restraints) Performing minimization step: 31. Total energy = 5089186.2483 kcal/mol (5038402.8535 without restraints) Performing minimization step: 32. Total energy = 4679722.5976 kcal/mol (4633713.5236 without restraints) Performing minimization step: 33. Total energy = 4308621.5993 kcal/mol (4266903.1002 without restraints) Performing minimization step: 34. Total energy = 3972008.8643 kcal/mol (3934149.0782 without restraints) Performing minimization step: 35. Total energy = 3666424.0750 kcal/mol (3632037.1240 without restraints) Performing minimization step: 36. Total energy = 3388774.0642 kcal/mol (3357514.8629 without restraints) Performing minimization step: 37. Total energy = 3136291.5145 kcal/mol (3107851.1986 without restraints) Performing minimization step: 38. Total energy = 2906498.5744 kcal/mol (2880600.4715 without restraints) Performing minimization step: 39. Total energy = 2697174.7768 kcal/mol (2673570.8523 without restraints) Performing minimization step: 40. Total energy = 2506328.7289 kcal/mol (2484796.4483 without restraints) Performing minimization step: 41. Total energy = 2332173.1088 kcal/mol (2312512.6655 without restraints) Performing minimization step: 42. Total energy = 2173102.5660 kcal/mol (2155134.4300 without restraints) Performing minimization step: 43. Total energy = 2027674.1724 kcal/mol (2011236.9209 without restraints) Performing minimization step: 44. Total energy = 1894590.1157 kcal/mol (1879538.5120 without restraints) Performing minimization step: 45. Total energy = 1772682.3668 kcal/mol (1758885.6573 without restraints) Performing minimization step: 46. Total energy = 1660899.0828 kcal/mol (1648239.4867 without restraints) Performing minimization step: 47. Total energy = 1558292.5408 kcal/mol (1546663.9083 without restraints) Performing minimization step: 48. Total energy = 1464008.4170 kcal/mol (1453315.0376 without restraints) Performing minimization step: 49. Total energy = 1377276.2536 kcal/mol (1367431.7946 without restraints) Performing minimization step: 50. Total energy = 1297400.9690 kcal/mol (1288327.5307 without restraints) Performing minimization step: 51. Total energy = 1223755.2894 kcal/mol (1215382.5615 without restraints) Performing minimization step: 52. Total energy = 1155772.9896 kcal/mol (1148037.4974 without restraints) Performing minimization step: 53. Total energy = 1092942.8477 kcal/mol (1085787.2771 without restraints) Performing minimization step: 54. Total energy = 1034803.2273 kcal/mol (1028175.8198 without restraints) Performing minimization step: 55. Total energy = 980937.2142 kcal/mol (974791.2227 without restraints) Performing minimization step: 56. Total energy = 930968.2413 kcal/mol (925261.4407 without restraints) Performing minimization step: 57. Total energy = 884556.1460 kcal/mol (879250.3910 without restraints) Performing minimization step: 58. Total energy = 841393.6109 kcal/mol (836454.4370 without restraints) Performing minimization step: 59. Total energy = 801202.9453 kcal/mol (796599.2076 without restraints) Performing minimization step: 60. Total energy = 763733.1723 kcal/mol (759436.7183 without restraints) Performing minimization step: 61. Total energy = 728757.3902 kcal/mol (724742.7637 without restraints) Performing minimization step: 62. Total energy = 696070.3806 kcal/mol (692314.5527 without restraints) Performing minimization step: 63. Total energy = 665486.4416 kcal/mol (661968.5678 without restraints) Performing minimization step: 64. Total energy = 636837.4263 kcal/mol (633538.6256 without restraints) Performing minimization step: 65. Total energy = 609970.9669 kcal/mol (606874.1234 without restraints) Performing minimization step: 66. Total energy = 584748.8719 kcal/mol (581838.4542 without restraints) Performing minimization step: 67. Total energy = 561045.6786 kcal/mol (558307.5787 without restraints) Performing minimization step: 68. Total energy = 538747.3517 kcal/mol (536168.7383 without restraints) Performing minimization step: 69. Total energy = 517750.1119 kcal/mol (515319.3004 without restraints) Performing minimization step: 70. Total energy = 497959.3870 kcal/mol (495665.7217 without restraints) Performing minimization step: 71. Total energy = 479288.8713 kcal/mol (477122.6206 without restraints) Performing minimization step: 72. Total energy = 461659.6860 kcal/mol (459611.9490 without restraints) Performing minimization step: 73. Total energy = 444999.6285 kcal/mol (443062.2513 without restraints) Performing minimization step: 74. Total energy = 429242.5059 kcal/mol (427408.0072 without restraints) Performing minimization step: 75. Total energy = 414327.5386 kcal/mol (412589.0436 without restraints) Performing minimization step: 76. Total energy = 400198.8315 kcal/mol (398550.0128 without restraints) Performing minimization step: 77. Total energy = 386804.9029 kcal/mol (385239.9284 without restraints) Performing minimization step: 78. Total energy = 374098.2660 kcal/mol (372611.7521 without restraints) Performing minimization step: 79. Total energy = 362035.0560 kcal/mol (360622.0262 without restraints) Performing minimization step: 80. Total energy = 350574.6984 kcal/mol (349230.5462 without restraints) Performing minimization step: 81. Total energy = 339679.6134 kcal/mol (338400.0700 without restraints) Performing minimization step: 82. Total energy = 329314.9527 kcal/mol (328096.0566 without restraints) Performing minimization step: 83. Total energy = 319448.3629 kcal/mol (318286.4346 without restraints) Performing minimization step: 84. Total energy = 310049.7762 kcal/mol (308941.3943 without restraints) Performing minimization step: 85. Total energy = 301091.2193 kcal/mol (300033.1991 without restraints) Performing minimization step: 86. Total energy = 292546.6454 kcal/mol (291536.0201 without restraints) Performing minimization step: 87. Total energy = 284391.7796 kcal/mol (283425.7832 without restraints) Performing minimization step: 88. Total energy = 276603.9822 kcal/mol (275680.0343 without restraints) Performing minimization step: 89. Total energy = 269162.1225 kcal/mol (268277.8134 without restraints) Performing minimization step: 90. Total energy = 262046.4652 kcal/mol (261199.5439 without restraints) Performing minimization step: 91. Total energy = 255238.5680 kcal/mol (254426.9305 without restraints) Performing minimization step: 92. Total energy = 248721.1879 kcal/mol (247942.8661 without restraints) Performing minimization step: 93. Total energy = 242478.1934 kcal/mol (241731.3459 without restraints) Performing minimization step: 94. Total energy = 236494.4871 kcal/mol (235777.3900 without restraints) Performing minimization step: 95. Total energy = 230755.9325 kcal/mol (230066.9713 without restraints) Performing minimization step: 96. Total energy = 225249.2885 kcal/mol (224586.9510 without restraints) Performing minimization step: 97. Total energy = 219962.1468 kcal/mol (219325.0152 without restraints) Performing minimization step: 98. Total energy = 214882.8755 kcal/mol (214269.6206 without restraints) Performing minimization step: 99. Total energy = 210000.5667 kcal/mol (209409.9419 without restraints) Performing minimization step: 100. Total energy = 205304.9882 kcal/mol (204735.8239 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 101. Total energy = 200786.5381 kcal/mol (200237.7364 without restraints) Performing minimization step: 102. Total energy = 196436.2022 kcal/mol (195906.7324 without restraints) Performing minimization step: 103. Total energy = 192245.5158 kcal/mol (191734.4099 without restraints) Performing minimization step: 104. Total energy = 188206.5277 kcal/mol (187712.8761 without restraints) Performing minimization step: 105. Total energy = 184311.7657 kcal/mol (183834.7135 without restraints) Performing minimization step: 106. Total energy = 180554.2054 kcal/mol (180092.9487 without restraints) Performing minimization step: 107. Total energy = 176927.2408 kcal/mol (176481.0238 without restraints) Performing minimization step: 108. Total energy = 173424.6569 kcal/mol (172992.7678 without restraints) Performing minimization step: 109. Total energy = 170040.6041 kcal/mol (169622.3732 without restraints) Performing minimization step: 110. Total energy = 166769.5746 kcal/mol (166364.3712 without restraints) Performing minimization step: 111. Total energy = 163606.3803 kcal/mol (163213.6100 without restraints) Performing minimization step: 112. Total energy = 160546.1308 kcal/mol (160165.2333 without restraints) Performing minimization step: 113. Total energy = 157584.2159 kcal/mol (157214.6629 without restraints) Performing minimization step: 114. Total energy = 154716.2865 kcal/mol (154357.5793 without restraints) Performing minimization step: 115. Total energy = 151938.2370 kcal/mol (151589.9049 without restraints) Performing minimization step: 116. Total energy = 149246.1912 kcal/mol (148907.7897 without restraints) Performing minimization step: 117. Total energy = 146636.4867 kcal/mol (146307.5955 without restraints) Performing minimization step: 118. Total energy = 144105.6604 kcal/mol (143785.8822 without restraints) Performing minimization step: 119. Total energy = 141650.4380 kcal/mol (141339.3968 without restraints) Performing minimization step: 120. Total energy = 139267.7198 kcal/mol (138965.0597 without restraints) Performing minimization step: 121. Total energy = 136954.5702 kcal/mol (136659.9541 without restraints) Performing minimization step: 122. Total energy = 134708.2085 kcal/mol (134421.3169 without restraints) Performing minimization step: 123. Total energy = 132525.9978 kcal/mol (132246.5275 without restraints) Performing minimization step: 124. Total energy = 130405.4363 kcal/mol (130133.0998 without restraints) Performing minimization step: 125. Total energy = 128344.1496 kcal/mol (128078.6738 without restraints) Performing minimization step: 126. Total energy = 126339.8823 kcal/mol (126081.0078 without restraints) Performing minimization step: 127. Total energy = 124390.4905 kcal/mol (124137.9705 without restraints) Performing minimization step: 128. Total energy = 122493.9354 kcal/mol (122247.5353 without restraints) Performing minimization step: 129. Total energy = 120648.2771 kcal/mol (120407.7735 without restraints) Performing minimization step: 130. Total energy = 118851.6683 kcal/mol (118616.8484 without restraints) Performing minimization step: 131. Total energy = 117102.3490 kcal/mol (116873.0101 without restraints) Performing minimization step: 132. Total energy = 115398.6412 kcal/mol (115174.5899 without restraints) Performing minimization step: 133. Total energy = 113738.9443 kcal/mol (113519.9961 without restraints) Performing minimization step: 134. Total energy = 112121.7307 kcal/mol (111907.7093 without restraints) Performing minimization step: 135. Total energy = 110545.5408 kcal/mol (110336.2779 without restraints) Performing minimization step: 136. Total energy = 109008.9802 kcal/mol (108804.3150 without restraints) Performing minimization step: 137. Total energy = 107510.7159 kcal/mol (107310.4943 without restraints) Performing minimization step: 138. Total energy = 106049.4720 kcal/mol (105853.5469 without restraints) Performing minimization step: 139. Total energy = 104624.0276 kcal/mol (104432.2580 without restraints) Performing minimization step: 140. Total energy = 103233.2135 kcal/mol (103045.4641 without restraints) Performing minimization step: 141. Total energy = 101875.9081 kcal/mol (101692.0496 without restraints) Performing minimization step: 142. Total energy = 100551.0376 kcal/mol (100370.9458 without restraints) Performing minimization step: 143. Total energy = 99257.5710 kcal/mol (99081.1267 without restraints) Performing minimization step: 144. Total energy = 97994.5193 kcal/mol (97821.6081 without restraints) Performing minimization step: 145. Total energy = 96760.9325 kcal/mol (96591.4445 without restraints) Performing minimization step: 146. Total energy = 95555.8979 kcal/mol (95389.7276 without restraints) Performing minimization step: 147. Total energy = 94378.5386 kcal/mol (94215.5844 without restraints) Performing minimization step: 148. Total energy = 93228.0112 kcal/mol (93068.1755 without restraints) Performing minimization step: 149. Total energy = 92103.5044 kcal/mol (91946.6934 without restraints) Performing minimization step: 150. Total energy = 91004.2373 kcal/mol (90850.3605 without restraints) Performing minimization step: 151. Total energy = 89929.4590 kcal/mol (89778.4294 without restraints) Performing minimization step: 152. Total energy = 88878.4450 kcal/mol (88730.1787 without restraints) Performing minimization step: 153. Total energy = 87850.4975 kcal/mol (87704.9137 without restraints) Performing minimization step: 154. Total energy = 86844.9445 kcal/mol (86701.9653 without restraints) Performing minimization step: 155. Total energy = 85861.1377 kcal/mol (85720.6879 without restraints) Performing minimization step: 156. Total energy = 84898.4516 kcal/mol (84760.4589 without restraints) Performing minimization step: 157. Total energy = 83956.2831 kcal/mol (83820.6773 without restraints) Performing minimization step: 158. Total energy = 83034.0499 kcal/mol (82900.7636 without restraints) Performing minimization step: 159. Total energy = 82131.1899 kcal/mol (82000.1579 without restraints) Performing minimization step: 160. Total energy = 81247.1595 kcal/mol (81118.3186 without restraints) Performing minimization step: 161. Total energy = 80381.4341 kcal/mol (80254.7237 without restraints) Performing minimization step: 162. Total energy = 79533.5071 kcal/mol (79408.8684 without restraints) Performing minimization step: 163. Total energy = 78702.8886 kcal/mol (78580.2647 without restraints) Performing minimization step: 164. Total energy = 77889.1047 kcal/mol (77768.4406 without restraints) Performing minimization step: 165. Total energy = 77091.6973 kcal/mol (76972.9398 without restraints) Performing minimization step: 166. Total energy = 76310.2233 kcal/mol (76193.3209 without restraints) Performing minimization step: 167. Total energy = 75544.2539 kcal/mol (75429.1569 without restraints) Performing minimization step: 168. Total energy = 74793.3743 kcal/mol (74680.0344 without restraints) Performing minimization step: 169. Total energy = 74057.1825 kcal/mol (73945.5532 without restraints) Performing minimization step: 170. Total energy = 73335.2895 kcal/mol (73225.3256 without restraints) Performing minimization step: 171. Total energy = 72627.3192 kcal/mol (72518.9770 without restraints) Performing minimization step: 172. Total energy = 71932.9068 kcal/mol (71826.1439 without restraints) Performing minimization step: 173. Total energy = 71251.6990 kcal/mol (71146.4743 without restraints) Performing minimization step: 174. Total energy = 70583.3535 kcal/mol (70479.6274 without restraints) Performing minimization step: 175. Total energy = 69927.5388 kcal/mol (69825.2727 without restraints) Performing minimization step: 176. Total energy = 69283.9332 kcal/mol (69183.0897 without restraints) Performing minimization step: 177. Total energy = 68652.2253 kcal/mol (68552.7680 without restraints) Performing minimization step: 178. Total energy = 68032.1131 kcal/mol (67934.0074 without restraints) Performing minimization step: 179. Total energy = 67423.3040 kcal/mol (67326.5156 without restraints) Performing minimization step: 180. Total energy = 66825.5136 kcal/mol (66730.0096 without restraints) Performing minimization step: 181. Total energy = 66238.4668 kcal/mol (66144.2150 without restraints) Performing minimization step: 182. Total energy = 65661.8968 kcal/mol (65568.8663 without restraints) Performing minimization step: 183. Total energy = 65095.5435 kcal/mol (65003.7041 without restraints) Performing minimization step: 184. Total energy = 64539.1557 kcal/mol (64448.4782 without restraints) Performing minimization step: 185. Total energy = 63992.4897 kcal/mol (63902.9457 without restraints) Performing minimization step: 186. Total energy = 63455.3087 kcal/mol (63366.8707 without restraints) Performing minimization step: 187. Total energy = 62927.3834 kcal/mol (62840.0248 without restraints) Performing minimization step: 188. Total energy = 62408.4897 kcal/mol (62322.1845 without restraints) Performing minimization step: 189. Total energy = 61898.4117 kcal/mol (61813.1346 without restraints) Performing minimization step: 190. Total energy = 61396.9386 kcal/mol (61312.6653 without restraints) Performing minimization step: 191. Total energy = 60903.8674 kcal/mol (60820.5741 without restraints) Performing minimization step: 192. Total energy = 60418.9994 kcal/mol (60336.6631 without restraints) Performing minimization step: 193. Total energy = 59942.1422 kcal/mol (59860.7405 without restraints) Performing minimization step: 194. Total energy = 59473.1091 kcal/mol (59392.6203 without restraints) Performing minimization step: 195. Total energy = 59011.7181 kcal/mol (58932.1211 without restraints) Performing minimization step: 196. Total energy = 58557.7931 kcal/mol (58479.0674 without restraints) Performing minimization step: 197. Total energy = 58111.1629 kcal/mol (58033.2885 without restraints) Performing minimization step: 198. Total energy = 57671.6609 kcal/mol (57594.6184 without restraints) Performing minimization step: 199. Total energy = 57239.1250 kcal/mol (57162.8958 without restraints) Performing minimization step: 200. Total energy = 56813.3991 kcal/mol (56737.9648 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 201. Total energy = 56394.3295 kcal/mol (56319.6722 without restraints) Performing minimization step: 202. Total energy = 55981.7681 kcal/mol (55907.8708 without restraints) Performing minimization step: 203. Total energy = 55575.5707 kcal/mol (55502.4164 without restraints) Performing minimization step: 204. Total energy = 55175.5971 kcal/mol (55103.1696 without restraints) Performing minimization step: 205. Total energy = 54781.7105 kcal/mol (54709.9939 without restraints) Performing minimization step: 206. Total energy = 54393.7782 kcal/mol (54322.7571 without restraints) Performing minimization step: 207. Total energy = 54011.6718 kcal/mol (53941.3311 without restraints) Performing minimization step: 208. Total energy = 53635.2650 kcal/mol (53565.5902 without restraints) Performing minimization step: 209. Total energy = 53264.4370 kcal/mol (53195.4137 without restraints) Performing minimization step: 210. Total energy = 52899.0685 kcal/mol (52830.6832 without restraints) Performing minimization step: 211. Total energy = 52539.0443 kcal/mol (52471.2835 without restraints) Performing minimization step: 212. Total energy = 52184.2517 kcal/mol (52117.1023 without restraints) Performing minimization step: 213. Total energy = 51834.5819 kcal/mol (51768.0312 without restraints) Performing minimization step: 214. Total energy = 51489.9284 kcal/mol (51423.9640 without restraints) Performing minimization step: 215. Total energy = 51150.1879 kcal/mol (51084.7977 without restraints) Performing minimization step: 216. Total energy = 50815.2591 kcal/mol (50750.4315 without restraints) Performing minimization step: 217. Total energy = 50485.0443 kcal/mol (50420.7678 without restraints) Performing minimization step: 218. Total energy = 50159.4479 kcal/mol (50095.7114 without restraints) Performing minimization step: 219. Total energy = 49838.3771 kcal/mol (49775.1698 without restraints) Performing minimization step: 220. Total energy = 49521.7411 kcal/mol (49459.0525 without restraints) Performing minimization step: 221. Total energy = 49209.4520 kcal/mol (49147.2717 without restraints) Performing minimization step: 222. Total energy = 48901.4237 kcal/mol (48839.7419 without restraints) Performing minimization step: 223. Total energy = 48597.5727 kcal/mol (48536.3795 without restraints) Performing minimization step: 224. Total energy = 48297.8173 kcal/mol (48237.1034 without restraints) Performing minimization step: 225. Total energy = 48002.0782 kcal/mol (47941.8342 without restraints) Performing minimization step: 226. Total energy = 47710.2781 kcal/mol (47650.4950 without restraints) Performing minimization step: 227. Total energy = 47422.3410 kcal/mol (47363.0101 without restraints) Performing minimization step: 228. Total energy = 47138.1937 kcal/mol (47079.3064 without restraints) Performing minimization step: 229. Total energy = 46857.7648 kcal/mol (46799.3127 without restraints) Performing minimization step: 230. Total energy = 46580.9841 kcal/mol (46522.9591 without restraints) Performing minimization step: 231. Total energy = 46307.7833 kcal/mol (46250.1775 without restraints) Performing minimization step: 232. Total energy = 46038.0961 kcal/mol (45980.9016 without restraints) Performing minimization step: 233. Total energy = 45771.8575 kcal/mol (45715.0669 without restraints) Performing minimization step: 234. Total energy = 45509.0042 kcal/mol (45452.6101 without restraints) Performing minimization step: 235. Total energy = 45249.4745 kcal/mol (45193.4698 without restraints) Performing minimization step: 236. Total energy = 44993.2082 kcal/mol (44937.5858 without restraints) Performing minimization step: 237. Total energy = 44740.1463 kcal/mol (44684.8994 without restraints) Performing minimization step: 238. Total energy = 44490.2316 kcal/mol (44435.3534 without restraints) Performing minimization step: 239. Total energy = 44243.4077 kcal/mol (44188.8918 without restraints) Performing minimization step: 240. Total energy = 43999.6203 kcal/mol (43945.4602 without restraints) Performing minimization step: 241. Total energy = 43758.8158 kcal/mol (43705.0055 without restraints) Performing minimization step: 242. Total energy = 43520.9420 kcal/mol (43467.4753 without restraints) Performing minimization step: 243. Total energy = 43285.9480 kcal/mol (43232.8189 without restraints) Performing minimization step: 244. Total energy = 43053.7839 kcal/mol (43000.9867 without restraints) Performing minimization step: 245. Total energy = 42824.4009 kcal/mol (42771.9299 without restraints) Performing minimization step: 246. Total energy = 42597.7520 kcal/mol (42545.6017 without restraints) Performing minimization step: 247. Total energy = 42373.7902 kcal/mol (42321.9552 without restraints) Performing minimization step: 248. Total energy = 42152.4703 kcal/mol (42100.9452 without restraints) Performing minimization step: 249. Total energy = 41933.7477 kcal/mol (41882.5275 without restraints) Performing minimization step: 250. Total energy = 41717.5792 kcal/mol (41666.6587 without restraints) Performing minimization step: 251. Total energy = 41503.9222 kcal/mol (41453.2965 without restraints) Performing minimization step: 252. Total energy = 41292.7353 kcal/mol (41242.3996 without restraints) Performing minimization step: 253. Total energy = 41083.9778 kcal/mol (41033.9274 without restraints) Performing minimization step: 254. Total energy = 40877.6100 kcal/mol (40827.8403 without restraints) Performing minimization step: 255. Total energy = 40673.5935 kcal/mol (40624.0999 without restraints) Performing minimization step: 256. Total energy = 40471.8896 kcal/mol (40422.6676 without restraints) Performing minimization step: 257. Total energy = 40272.4611 kcal/mol (40223.5065 without restraints) Performing minimization step: 258. Total energy = 40075.2716 kcal/mol (40026.5801 without restraints) Performing minimization step: 259. Total energy = 39880.2855 kcal/mol (39831.8531 without restraints) Performing minimization step: 260. Total energy = 39687.4684 kcal/mol (39639.2909 without restraints) Performing minimization step: 261. Total energy = 39496.7859 kcal/mol (39448.8593 without restraints) Performing minimization step: 262. Total energy = 39308.2041 kcal/mol (39260.5246 without restraints) Performing minimization step: 263. Total energy = 39121.6907 kcal/mol (39074.2545 without restraints) Performing minimization step: 264. Total energy = 38937.2132 kcal/mol (38890.0165 without restraints) Performing minimization step: 265. Total energy = 38754.7401 kcal/mol (38707.7793 without restraints) Performing minimization step: 266. Total energy = 38574.2411 kcal/mol (38527.5125 without restraints) Performing minimization step: 267. Total energy = 38395.6857 kcal/mol (38349.1859 without restraints) Performing minimization step: 268. Total energy = 38219.0443 kcal/mol (38172.7698 without restraints) Performing minimization step: 269. Total energy = 38044.2883 kcal/mol (37998.2358 without restraints) Performing minimization step: 270. Total energy = 37871.3885 kcal/mol (37825.5547 without restraints) Performing minimization step: 271. Total energy = 37700.3173 kcal/mol (37654.6989 without restraints) Performing minimization step: 272. Total energy = 37531.0477 kcal/mol (37485.6415 without restraints) Performing minimization step: 273. Total energy = 37363.5527 kcal/mol (37318.3557 without restraints) Performing minimization step: 274. Total energy = 37197.8060 kcal/mol (37152.8151 without restraints) Performing minimization step: 275. Total energy = 37033.7821 kcal/mol (36988.9944 without restraints) Performing minimization step: 276. Total energy = 36871.4555 kcal/mol (36826.8678 without restraints) Performing minimization step: 277. Total energy = 36710.8015 kcal/mol (36666.4110 without restraints) Performing minimization step: 278. Total energy = 36551.7957 kcal/mol (36507.5997 without restraints) Performing minimization step: 279. Total energy = 36394.4136 kcal/mol (36350.4094 without restraints) Performing minimization step: 280. Total energy = 36238.6331 kcal/mol (36194.8178 without restraints) Performing minimization step: 281. Total energy = 36084.4305 kcal/mol (36040.8015 without restraints) Performing minimization step: 282. Total energy = 35931.7830 kcal/mol (35888.3376 without restraints) Performing minimization step: 283. Total energy = 35780.6691 kcal/mol (35737.4049 without restraints) Performing minimization step: 284. Total energy = 35631.0664 kcal/mol (35587.9808 without restraints) Performing minimization step: 285. Total energy = 35482.9540 kcal/mol (35440.0446 without restraints) Performing minimization step: 286. Total energy = 35336.3107 kcal/mol (35293.5749 without restraints) Performing minimization step: 287. Total energy = 35191.1154 kcal/mol (35148.5508 without restraints) Performing minimization step: 288. Total energy = 35047.3489 kcal/mol (35004.9534 without restraints) Performing minimization step: 289. Total energy = 34904.9911 kcal/mol (34862.7623 without restraints) Performing minimization step: 290. Total energy = 34764.0224 kcal/mol (34721.9580 without restraints) Performing minimization step: 291. Total energy = 34624.4236 kcal/mol (34582.5213 without restraints) Performing minimization step: 292. Total energy = 34486.1759 kcal/mol (34444.4337 without restraints) Performing minimization step: 293. Total energy = 34349.2607 kcal/mol (34307.6763 without restraints) Performing minimization step: 294. Total energy = 34213.6600 kcal/mol (34172.2314 without restraints) Performing minimization step: 295. Total energy = 34079.3559 kcal/mol (34038.0811 without restraints) Performing minimization step: 296. Total energy = 33946.3310 kcal/mol (33905.2079 without restraints) Performing minimization step: 297. Total energy = 33814.5678 kcal/mol (33773.5943 without restraints) Performing minimization step: 298. Total energy = 33684.0494 kcal/mol (33643.2236 without restraints) Performing minimization step: 299. Total energy = 33554.7593 kcal/mol (33514.0793 without restraints) Performing minimization step: 300. Total energy = 33426.6809 kcal/mol (33386.1448 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 301. Total energy = 33299.7981 kcal/mol (33259.4041 without restraints) Performing minimization step: 302. Total energy = 33174.0954 kcal/mol (33133.8416 without restraints) Performing minimization step: 303. Total energy = 33049.5575 kcal/mol (33009.4422 without restraints) Performing minimization step: 304. Total energy = 32926.1676 kcal/mol (32886.1889 without restraints) Performing minimization step: 305. Total energy = 32803.9117 kcal/mol (32764.0679 without restraints) Performing minimization step: 306. Total energy = 32682.7751 kcal/mol (32643.0645 without restraints) Performing minimization step: 307. Total energy = 32562.7429 kcal/mol (32523.1639 without restraints) Performing minimization step: 308. Total energy = 32443.8009 kcal/mol (32404.3517 without restraints) Performing minimization step: 309. Total energy = 32325.9350 kcal/mol (32286.6140 without restraints) Performing minimization step: 310. Total energy = 32209.1311 kcal/mol (32169.9368 without restraints) Performing minimization step: 311. Total energy = 32093.3760 kcal/mol (32054.3067 without restraints) Performing minimization step: 312. Total energy = 31978.6562 kcal/mol (31939.7105 without restraints) Performing minimization step: 313. Total energy = 31864.9577 kcal/mol (31826.1340 without restraints) Performing minimization step: 314. Total energy = 31752.2684 kcal/mol (31713.5652 without restraints) Performing minimization step: 315. Total energy = 31640.5749 kcal/mol (31601.9908 without restraints) Performing minimization step: 316. Total energy = 31529.8648 kcal/mol (31491.3983 without restraints) Performing minimization step: 317. Total energy = 31420.1258 kcal/mol (31381.7754 without restraints) Performing minimization step: 318. Total energy = 31311.3456 kcal/mol (31273.1101 without restraints) Performing minimization step: 319. Total energy = 31203.5122 kcal/mol (31165.3900 without restraints) Performing minimization step: 320. Total energy = 31096.6137 kcal/mol (31058.6034 without restraints) Performing minimization step: 321. Total energy = 30990.6386 kcal/mol (30952.7390 without restraints) Performing minimization step: 322. Total energy = 30885.5750 kcal/mol (30847.7848 without restraints) Performing minimization step: 323. Total energy = 30781.4119 kcal/mol (30743.7298 without restraints) Performing minimization step: 324. Total energy = 30678.1382 kcal/mol (30640.5629 without restraints) Performing minimization step: 325. Total energy = 30575.7423 kcal/mol (30538.2725 without restraints) Performing minimization step: 326. Total energy = 30474.2145 kcal/mol (30436.8490 without restraints) Performing minimization step: 327. Total energy = 30373.5438 kcal/mol (30336.2814 without restraints) Performing minimization step: 328. Total energy = 30273.7194 kcal/mol (30236.5588 without restraints) Performing minimization step: 329. Total energy = 30174.7310 kcal/mol (30137.6711 without restraints) Performing minimization step: 330. Total energy = 30076.5685 kcal/mol (30039.6082 without restraints) Performing minimization step: 331. Total energy = 29979.2224 kcal/mol (29942.3605 without restraints) Performing minimization step: 332. Total energy = 29882.6818 kcal/mol (29845.9172 without restraints) Performing minimization step: 333. Total energy = 29786.9374 kcal/mol (29750.2689 without restraints) Performing minimization step: 334. Total energy = 29691.9798 kcal/mol (29655.4064 without restraints) Performing minimization step: 335. Total energy = 29597.7999 kcal/mol (29561.3206 without restraints) Performing minimization step: 336. Total energy = 29504.3878 kcal/mol (29468.0013 without restraints) Performing minimization step: 337. Total energy = 29411.7340 kcal/mol (29375.4394 without restraints) Performing minimization step: 338. Total energy = 29319.8301 kcal/mol (29283.6263 without restraints) Performing minimization step: 339. Total energy = 29228.6673 kcal/mol (29192.5534 without restraints) Performing minimization step: 340. Total energy = 29138.2362 kcal/mol (29102.2111 without restraints) Performing minimization step: 341. Total energy = 29048.5286 kcal/mol (29012.5913 without restraints) Performing minimization step: 342. Total energy = 28959.5358 kcal/mol (28923.6854 without restraints) Performing minimization step: 343. Total energy = 28871.2494 kcal/mol (28835.4849 without restraints) Performing minimization step: 344. Total energy = 28783.6608 kcal/mol (28747.9813 without restraints) Performing minimization step: 345. Total energy = 28696.7620 kcal/mol (28661.1666 without restraints) Performing minimization step: 346. Total energy = 28610.5450 kcal/mol (28575.0328 without restraints) Performing minimization step: 347. Total energy = 28525.0021 kcal/mol (28489.5720 without restraints) Performing minimization step: 348. Total energy = 28440.1248 kcal/mol (28404.7762 without restraints) Performing minimization step: 349. Total energy = 28355.9060 kcal/mol (28320.6379 without restraints) Performing minimization step: 350. Total energy = 28272.3380 kcal/mol (28237.1495 without restraints) Performing minimization step: 351. Total energy = 28189.4126 kcal/mol (28154.3026 without restraints) Performing minimization step: 352. Total energy = 28107.1227 kcal/mol (28072.0909 without restraints) Performing minimization step: 353. Total energy = 28025.4613 kcal/mol (27990.5065 without restraints) Performing minimization step: 354. Total energy = 27944.4207 kcal/mol (27909.5421 without restraints) Performing minimization step: 355. Total energy = 27863.9940 kcal/mol (27829.1909 without restraints) Performing minimization step: 356. Total energy = 27784.1742 kcal/mol (27749.4458 without restraints) Performing minimization step: 357. Total energy = 27704.9543 kcal/mol (27670.2999 without restraints) Performing minimization step: 358. Total energy = 27626.3276 kcal/mol (27591.7462 without restraints) Performing minimization step: 359. Total energy = 27548.2873 kcal/mol (27513.7783 without restraints) Performing minimization step: 360. Total energy = 27470.8265 kcal/mol (27436.3892 without restraints) Performing minimization step: 361. Total energy = 27393.9384 kcal/mol (27359.5720 without restraints) Performing minimization step: 362. Total energy = 27317.6173 kcal/mol (27283.3210 without restraints) Performing minimization step: 363. Total energy = 27241.8561 kcal/mol (27207.6293 without restraints) Performing minimization step: 364. Total energy = 27166.6487 kcal/mol (27132.4906 without restraints) Performing minimization step: 365. Total energy = 27091.9889 kcal/mol (27057.8988 without restraints) Performing minimization step: 366. Total energy = 27017.8707 kcal/mol (26983.8480 without restraints) Performing minimization step: 367. Total energy = 26944.2875 kcal/mol (26910.3315 without restraints) Performing minimization step: 368. Total energy = 26871.2338 kcal/mol (26837.3438 without restraints) Performing minimization step: 369. Total energy = 26798.7035 kcal/mol (26764.8787 without restraints) Performing minimization step: 370. Total energy = 26726.6903 kcal/mol (26692.9303 without restraints) Performing minimization step: 371. Total energy = 26655.1891 kcal/mol (26621.4931 without restraints) Performing minimization step: 372. Total energy = 26584.1941 kcal/mol (26550.5619 without restraints) Performing minimization step: 373. Total energy = 26513.6998 kcal/mol (26480.1300 without restraints) Performing minimization step: 374. Total energy = 26443.6999 kcal/mol (26410.1923 without restraints) Performing minimization step: 375. Total energy = 26374.1896 kcal/mol (26340.7436 without restraints) Performing minimization step: 376. Total energy = 26305.1632 kcal/mol (26271.7781 without restraints) Performing minimization step: 377. Total energy = 26236.6154 kcal/mol (26203.2907 without restraints) Performing minimization step: 378. Total energy = 26168.5408 kcal/mol (26135.2759 without restraints) Performing minimization step: 379. Total energy = 26100.9344 kcal/mol (26067.7288 without restraints) Performing minimization step: 380. Total energy = 26033.7913 kcal/mol (26000.6442 without restraints) Performing minimization step: 381. Total energy = 25967.1055 kcal/mol (25934.0166 without restraints) Performing minimization step: 382. Total energy = 25900.8732 kcal/mol (25867.8417 without restraints) Performing minimization step: 383. Total energy = 25835.0887 kcal/mol (25802.1143 without restraints) Performing minimization step: 384. Total energy = 25769.7473 kcal/mol (25736.8294 without restraints) Performing minimization step: 385. Total energy = 25704.8440 kcal/mol (25671.9819 without restraints) Performing minimization step: 386. Total energy = 25640.3737 kcal/mol (25607.5670 without restraints) Performing minimization step: 387. Total energy = 25576.3322 kcal/mol (25543.5804 without restraints) Performing minimization step: 388. Total energy = 25512.7151 kcal/mol (25480.0177 without restraints) Performing minimization step: 389. Total energy = 25449.5174 kcal/mol (25416.8738 without restraints) Performing minimization step: 390. Total energy = 25386.7348 kcal/mol (25354.1446 without restraints) Performing minimization step: 391. Total energy = 25324.3624 kcal/mol (25291.8251 without restraints) Performing minimization step: 392. Total energy = 25262.3960 kcal/mol (25229.9111 without restraints) Performing minimization step: 393. Total energy = 25200.8314 kcal/mol (25168.3983 without restraints) Performing minimization step: 394. Total energy = 25139.6642 kcal/mol (25107.2826 without restraints) Performing minimization step: 395. Total energy = 25078.8899 kcal/mol (25046.5593 without restraints) Performing minimization step: 396. Total energy = 25018.5042 kcal/mol (24986.2241 without restraints) Performing minimization step: 397. Total energy = 24958.5037 kcal/mol (24926.2737 without restraints) Performing minimization step: 398. Total energy = 24898.8836 kcal/mol (24866.7032 without restraints) Performing minimization step: 399. Total energy = 24839.6399 kcal/mol (24807.5087 without restraints) Performing minimization step: 400. Total energy = 24780.7688 kcal/mol (24748.6863 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 401. Total energy = 24722.2664 kcal/mol (24690.2322 without restraints) Performing minimization step: 402. Total energy = 24664.1283 kcal/mol (24632.1419 without restraints) Performing minimization step: 403. Total energy = 24606.3509 kcal/mol (24574.4121 without restraints) Performing minimization step: 404. Total energy = 24548.9308 kcal/mol (24517.0391 without restraints) Performing minimization step: 405. Total energy = 24491.8637 kcal/mol (24460.0186 without restraints) Performing minimization step: 406. Total energy = 24435.1463 kcal/mol (24403.3474 without restraints) Performing minimization step: 407. Total energy = 24378.7742 kcal/mol (24347.0214 without restraints) Performing minimization step: 408. Total energy = 24322.7445 kcal/mol (24291.0370 without restraints) Performing minimization step: 409. Total energy = 24267.0533 kcal/mol (24235.3909 without restraints) Performing minimization step: 410. Total energy = 24211.6970 kcal/mol (24180.0793 without restraints) Performing minimization step: 411. Total energy = 24156.6722 kcal/mol (24125.0988 without restraints) Performing minimization step: 412. Total energy = 24101.9751 kcal/mol (24070.4458 without restraints) Performing minimization step: 413. Total energy = 24047.6025 kcal/mol (24016.1166 without restraints) Performing minimization step: 414. Total energy = 23993.5512 kcal/mol (23962.1087 without restraints) Performing minimization step: 415. Total energy = 23939.8177 kcal/mol (23908.4181 without restraints) Performing minimization step: 416. Total energy = 23886.3989 kcal/mol (23855.0418 without restraints) Performing minimization step: 417. Total energy = 23833.2914 kcal/mol (23801.9765 without restraints) Performing minimization step: 418. Total energy = 23780.4921 kcal/mol (23749.2190 without restraints) Performing minimization step: 419. Total energy = 23727.9976 kcal/mol (23696.7659 without restraints) Performing minimization step: 420. Total energy = 23675.8046 kcal/mol (23644.6143 without restraints) Performing minimization step: 421. Total energy = 23623.9104 kcal/mol (23592.7609 without restraints) Performing minimization step: 422. Total energy = 23572.3120 kcal/mol (23541.2030 without restraints) Performing minimization step: 423. Total energy = 23521.0059 kcal/mol (23489.9371 without restraints) Performing minimization step: 424. Total energy = 23469.9891 kcal/mol (23438.9602 without restraints) Performing minimization step: 425. Total energy = 23419.2593 kcal/mol (23388.2699 without restraints) Performing minimization step: 426. Total energy = 23368.8128 kcal/mol (23337.8627 without restraints) Performing minimization step: 427. Total energy = 23318.6472 kcal/mol (23287.7360 without restraints) Performing minimization step: 428. Total energy = 23268.7596 kcal/mol (23237.8871 without restraints) Performing minimization step: 429. Total energy = 23219.1470 kcal/mol (23188.3129 without restraints) Performing minimization step: 430. Total energy = 23169.8066 kcal/mol (23139.0106 without restraints) Performing minimization step: 431. Total energy = 23120.7361 kcal/mol (23089.9780 without restraints) Performing minimization step: 432. Total energy = 23071.9321 kcal/mol (23041.2114 without restraints) Performing minimization step: 433. Total energy = 23023.3922 kcal/mol (22992.7088 without restraints) Performing minimization step: 434. Total energy = 22975.1137 kcal/mol (22944.4672 without restraints) Performing minimization step: 435. Total energy = 22927.0942 kcal/mol (22896.4843 without restraints) Performing minimization step: 436. Total energy = 22879.3306 kcal/mol (22848.7570 without restraints) Performing minimization step: 437. Total energy = 22831.8209 kcal/mol (22801.2838 without restraints) Performing minimization step: 438. Total energy = 22784.5625 kcal/mol (22754.0610 without restraints) Performing minimization step: 439. Total energy = 22737.5526 kcal/mol (22707.0869 without restraints) Performing minimization step: 440. Total energy = 22690.7894 kcal/mol (22660.3589 without restraints) Performing minimization step: 441. Total energy = 22644.2694 kcal/mol (22613.8740 without restraints) Performing minimization step: 442. Total energy = 22597.9902 kcal/mol (22567.6297 without restraints) Performing minimization step: 443. Total energy = 22551.9509 kcal/mol (22521.6250 without restraints) Performing minimization step: 444. Total energy = 22506.1474 kcal/mol (22475.8559 without restraints) Performing minimization step: 445. Total energy = 22460.5784 kcal/mol (22430.3210 without restraints) Performing minimization step: 446. Total energy = 22415.2415 kcal/mol (22385.0179 without restraints) Performing minimization step: 447. Total energy = 22370.1338 kcal/mol (22339.9440 without restraints) Performing minimization step: 448. Total energy = 22325.2536 kcal/mol (22295.0972 without restraints) Performing minimization step: 449. Total energy = 22280.5983 kcal/mol (22250.4752 without restraints) Performing minimization step: 450. Total energy = 22236.1662 kcal/mol (22206.0761 without restraints) Performing minimization step: 451. Total energy = 22191.9550 kcal/mol (22161.8974 without restraints) Performing minimization step: 452. Total energy = 22147.9621 kcal/mol (22117.9372 without restraints) Performing minimization step: 453. Total energy = 22104.1859 kcal/mol (22074.1934 without restraints) Performing minimization step: 454. Total energy = 22060.6248 kcal/mol (22030.6646 without restraints) Performing minimization step: 455. Total energy = 22017.2757 kcal/mol (21987.3473 without restraints) Performing minimization step: 456. Total energy = 21974.1371 kcal/mol (21944.2403 without restraints) Performing minimization step: 457. Total energy = 21931.2068 kcal/mol (21901.3416 without restraints) Performing minimization step: 458. Total energy = 21888.4831 kcal/mol (21858.6492 without restraints) Performing minimization step: 459. Total energy = 21845.9635 kcal/mol (21816.1607 without restraints) Performing minimization step: 460. Total energy = 21803.6464 kcal/mol (21773.8745 without restraints) Performing minimization step: 461. Total energy = 21761.5299 kcal/mol (21731.7887 without restraints) Performing minimization step: 462. Total energy = 21719.6117 kcal/mol (21689.9011 without restraints) Performing minimization step: 463. Total energy = 21677.8903 kcal/mol (21648.2099 without restraints) Performing minimization step: 464. Total energy = 21636.3639 kcal/mol (21606.7137 without restraints) Performing minimization step: 465. Total energy = 21595.0308 kcal/mol (21565.4106 without restraints) Performing minimization step: 466. Total energy = 21553.8888 kcal/mol (21524.2985 without restraints) Performing minimization step: 467. Total energy = 21512.9363 kcal/mol (21483.3755 without restraints) Performing minimization step: 468. Total energy = 21472.1714 kcal/mol (21442.6402 without restraints) Performing minimization step: 469. Total energy = 21431.5928 kcal/mol (21402.0908 without restraints) Performing minimization step: 470. Total energy = 21391.1982 kcal/mol (21361.7253 without restraints) Performing minimization step: 471. Total energy = 21350.9864 kcal/mol (21321.5424 without restraints) Performing minimization step: 472. Total energy = 21310.9551 kcal/mol (21281.5399 without restraints) Performing minimization step: 473. Total energy = 21271.1035 kcal/mol (21241.7169 without restraints) Performing minimization step: 474. Total energy = 21231.4294 kcal/mol (21202.0712 without restraints) Performing minimization step: 475. Total energy = 21191.9310 kcal/mol (21162.6010 without restraints) Performing minimization step: 476. Total energy = 21152.6062 kcal/mol (21123.3041 without restraints) Performing minimization step: 477. Total energy = 21113.4545 kcal/mol (21084.1807 without restraints) Performing minimization step: 478. Total energy = 21074.4743 kcal/mol (21045.2283 without restraints) Performing minimization step: 479. Total energy = 21035.6637 kcal/mol (21006.4453 without restraints) Performing minimization step: 480. Total energy = 20997.0215 kcal/mol (20967.8310 without restraints) Performing minimization step: 481. Total energy = 20958.5455 kcal/mol (20929.3818 without restraints) Performing minimization step: 482. Total energy = 20920.2344 kcal/mol (20891.0981 without restraints) Performing minimization step: 483. Total energy = 20882.0867 kcal/mol (20852.9775 without restraints) Performing minimization step: 484. Total energy = 20844.1014 kcal/mol (20815.0191 without restraints) Performing minimization step: 485. Total energy = 20806.2774 kcal/mol (20777.2219 without restraints) Performing minimization step: 486. Total energy = 20768.6122 kcal/mol (20739.5833 without restraints) Performing minimization step: 487. Total energy = 20731.1052 kcal/mol (20702.1029 without restraints) Performing minimization step: 488. Total energy = 20693.7543 kcal/mol (20664.7783 without restraints) Performing minimization step: 489. Total energy = 20656.5583 kcal/mol (20627.6086 without restraints) Performing minimization step: 490. Total energy = 20619.5158 kcal/mol (20590.5922 without restraints) Performing minimization step: 491. Total energy = 20582.6262 kcal/mol (20553.7286 without restraints) Performing minimization step: 492. Total energy = 20545.8879 kcal/mol (20517.0161 without restraints) Performing minimization step: 493. Total energy = 20509.2991 kcal/mol (20480.4533 without restraints) Performing minimization step: 494. Total energy = 20472.8590 kcal/mol (20444.0386 without restraints) Performing minimization step: 495. Total energy = 20436.5652 kcal/mol (20407.7705 without restraints) Performing minimization step: 496. Total energy = 20400.4179 kcal/mol (20371.6484 without restraints) Performing minimization step: 497. Total energy = 20364.4157 kcal/mol (20335.6715 without restraints) Performing minimization step: 498. Total energy = 20328.5566 kcal/mol (20299.8376 without restraints) Performing minimization step: 499. Total energy = 20292.8399 kcal/mol (20264.1458 without restraints) Performing minimization step: 500. Total energy = 20257.2649 kcal/mol (20228.5957 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 501. Total energy = 20221.8291 kcal/mol (20193.1847 without restraints) Performing minimization step: 502. Total energy = 20186.5319 kcal/mol (20157.9122 without restraints) Performing minimization step: 503. Total energy = 20151.3723 kcal/mol (20122.7772 without restraints) Performing minimization step: 504. Total energy = 20116.3487 kcal/mol (20087.7780 without restraints) Performing minimization step: 505. Total energy = 20081.4606 kcal/mol (20052.9143 without restraints) Performing minimization step: 506. Total energy = 20046.7066 kcal/mol (20018.1845 without restraints) Performing minimization step: 507. Total energy = 20012.0854 kcal/mol (19983.5875 without restraints) Performing minimization step: 508. Total energy = 19977.5962 kcal/mol (19949.1223 without restraints) Performing minimization step: 509. Total energy = 19943.2379 kcal/mol (19914.7879 without restraints) Performing minimization step: 510. Total energy = 19909.0093 kcal/mol (19880.5832 without restraints) Performing minimization step: 511. Total energy = 19874.9098 kcal/mol (19846.5074 without restraints) Performing minimization step: 512. Total energy = 19840.9372 kcal/mol (19812.5584 without restraints) Performing minimization step: 513. Total energy = 19807.0915 kcal/mol (19778.7363 without restraints) Performing minimization step: 514. Total energy = 19773.3714 kcal/mol (19745.0397 without restraints) Performing minimization step: 515. Total energy = 19739.7762 kcal/mol (19711.4678 without restraints) Performing minimization step: 516. Total energy = 19706.3049 kcal/mol (19678.0198 without restraints) Performing minimization step: 517. Total energy = 19672.9561 kcal/mol (19644.6943 without restraints) Performing minimization step: 518. Total energy = 19639.7286 kcal/mol (19611.4897 without restraints) Performing minimization step: 519. Total energy = 19606.6214 kcal/mol (19578.4056 without restraints) Performing minimization step: 520. Total energy = 19573.6343 kcal/mol (19545.4413 without restraints) Performing minimization step: 521. Total energy = 19540.7659 kcal/mol (19512.5957 without restraints) Performing minimization step: 522. Total energy = 19508.0152 kcal/mol (19479.8678 without restraints) Performing minimization step: 523. Total energy = 19475.3820 kcal/mol (19447.2573 without restraints) Performing minimization step: 524. Total energy = 19442.8646 kcal/mol (19414.7624 without restraints) Performing minimization step: 525. Total energy = 19410.4619 kcal/mol (19382.3822 without restraints) Performing minimization step: 526. Total energy = 19378.1736 kcal/mol (19350.1163 without restraints) Performing minimization step: 527. Total energy = 19345.9990 kcal/mol (19317.9640 without restraints) Performing minimization step: 528. Total energy = 19313.9371 kcal/mol (19285.9242 without restraints) Performing minimization step: 529. Total energy = 19281.9861 kcal/mol (19253.9955 without restraints) Performing minimization step: 530. Total energy = 19250.1459 kcal/mol (19222.1774 without restraints) Performing minimization step: 531. Total energy = 19218.4163 kcal/mol (19190.4699 without restraints) Performing minimization step: 532. Total energy = 19186.7955 kcal/mol (19158.8708 without restraints) Performing minimization step: 533. Total energy = 19155.2829 kcal/mol (19127.3803 without restraints) Performing minimization step: 534. Total energy = 19123.8777 kcal/mol (19095.9968 without restraints) Performing minimization step: 535. Total energy = 19092.5795 kcal/mol (19064.7204 without restraints) Performing minimization step: 536. Total energy = 19061.3881 kcal/mol (19033.5507 without restraints) Performing minimization step: 537. Total energy = 19030.3015 kcal/mol (19002.4856 without restraints) Performing minimization step: 538. Total energy = 18999.3185 kcal/mol (18971.5241 without restraints) Performing minimization step: 539. Total energy = 18968.4396 kcal/mol (18940.6666 without restraints) Performing minimization step: 540. Total energy = 18937.6637 kcal/mol (18909.9122 without restraints) Performing minimization step: 541. Total energy = 18906.9897 kcal/mol (18879.2594 without restraints) Performing minimization step: 542. Total energy = 18876.4173 kcal/mol (18848.7082 without restraints) Performing minimization step: 543. Total energy = 18845.9454 kcal/mol (18818.2575 without restraints) Performing minimization step: 544. Total energy = 18815.5739 kcal/mol (18787.9071 without restraints) Performing minimization step: 545. Total energy = 18785.3014 kcal/mol (18757.6556 without restraints) Performing minimization step: 546. Total energy = 18755.1275 kcal/mol (18727.5026 without restraints) Performing minimization step: 547. Total energy = 18725.0513 kcal/mol (18697.4474 without restraints) Performing minimization step: 548. Total energy = 18695.0727 kcal/mol (18667.4896 without restraints) Performing minimization step: 549. Total energy = 18665.1906 kcal/mol (18637.6283 without restraints) Performing minimization step: 550. Total energy = 18635.4040 kcal/mol (18607.8625 without restraints) Performing minimization step: 551. Total energy = 18605.7127 kcal/mol (18578.1918 without restraints) Performing minimization step: 552. Total energy = 18576.1161 kcal/mol (18548.6158 without restraints) Performing minimization step: 553. Total energy = 18546.6134 kcal/mol (18519.1338 without restraints) Performing minimization step: 554. Total energy = 18517.2038 kcal/mol (18489.7445 without restraints) Performing minimization step: 555. Total energy = 18487.8862 kcal/mol (18460.4474 without restraints) Performing minimization step: 556. Total energy = 18458.6610 kcal/mol (18431.2426 without restraints) Performing minimization step: 557. Total energy = 18429.5274 kcal/mol (18402.1294 without restraints) Performing minimization step: 558. Total energy = 18400.4845 kcal/mol (18373.1067 without restraints) Performing minimization step: 559. Total energy = 18371.5315 kcal/mol (18344.1740 without restraints) Performing minimization step: 560. Total energy = 18342.6679 kcal/mol (18315.3305 without restraints) Performing minimization step: 561. Total energy = 18313.8937 kcal/mol (18286.5764 without restraints) Performing minimization step: 562. Total energy = 18285.2080 kcal/mol (18257.9107 without restraints) Performing minimization step: 563. Total energy = 18256.6098 kcal/mol (18229.3326 without restraints) Performing minimization step: 564. Total energy = 18228.0998 kcal/mol (18200.8425 without restraints) Performing minimization step: 565. Total energy = 18199.6754 kcal/mol (18172.4380 without restraints) Performing minimization step: 566. Total energy = 18171.3372 kcal/mol (18144.1198 without restraints) Performing minimization step: 567. Total energy = 18143.0846 kcal/mol (18115.8869 without restraints) Performing minimization step: 568. Total energy = 18114.9170 kcal/mol (18087.7391 without restraints) Performing minimization step: 569. Total energy = 18086.8340 kcal/mol (18059.6757 without restraints) Performing minimization step: 570. Total energy = 18058.8346 kcal/mol (18031.6960 without restraints) Performing minimization step: 571. Total energy = 18030.9186 kcal/mol (18003.7996 without restraints) Performing minimization step: 572. Total energy = 18003.0856 kcal/mol (17975.9862 without restraints) Performing minimization step: 573. Total energy = 17975.3346 kcal/mol (17948.2547 without restraints) Performing minimization step: 574. Total energy = 17947.6657 kcal/mol (17920.6053 without restraints) Performing minimization step: 575. Total energy = 17920.0781 kcal/mol (17893.0371 without restraints) Performing minimization step: 576. Total energy = 17892.5716 kcal/mol (17865.5501 without restraints) Performing minimization step: 577. Total energy = 17865.1451 kcal/mol (17838.1428 without restraints) Performing minimization step: 578. Total energy = 17837.7986 kcal/mol (17810.8154 without restraints) Performing minimization step: 579. Total energy = 17810.5312 kcal/mol (17783.5675 without restraints) Performing minimization step: 580. Total energy = 17783.3427 kcal/mol (17756.3983 without restraints) Performing minimization step: 581. Total energy = 17756.2333 kcal/mol (17729.3080 without restraints) Performing minimization step: 582. Total energy = 17729.2014 kcal/mol (17702.2953 without restraints) Performing minimization step: 583. Total energy = 17702.2470 kcal/mol (17675.3599 without restraints) Performing minimization step: 584. Total energy = 17675.3696 kcal/mol (17648.5016 without restraints) Performing minimization step: 585. Total energy = 17648.5685 kcal/mol (17621.7194 without restraints) Performing minimization step: 586. Total energy = 17621.8432 kcal/mol (17595.0132 without restraints) Performing minimization step: 587. Total energy = 17595.1943 kcal/mol (17568.3832 without restraints) Performing minimization step: 588. Total energy = 17568.6205 kcal/mol (17541.8282 without restraints) Performing minimization step: 589. Total energy = 17542.1217 kcal/mol (17515.3484 without restraints) Performing minimization step: 590. Total energy = 17515.6971 kcal/mol (17488.9425 without restraints) Performing minimization step: 591. Total energy = 17489.3464 kcal/mol (17462.6106 without restraints) Performing minimization step: 592. Total energy = 17463.0696 kcal/mol (17436.3526 without restraints) Performing minimization step: 593. Total energy = 17436.8656 kcal/mol (17410.1672 without restraints) Performing minimization step: 594. Total energy = 17410.7340 kcal/mol (17384.0543 without restraints) Performing minimization step: 595. Total energy = 17384.6753 kcal/mol (17358.0142 without restraints) Performing minimization step: 596. Total energy = 17358.6884 kcal/mol (17332.0459 without restraints) Performing minimization step: 597. Total energy = 17332.7725 kcal/mol (17306.1486 without restraints) Performing minimization step: 598. Total energy = 17306.9279 kcal/mol (17280.3225 without restraints) Performing minimization step: 599. Total energy = 17281.1538 kcal/mol (17254.5669 without restraints) Performing minimization step: 600. Total energy = 17255.4505 kcal/mol (17228.8818 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 601. Total energy = 17229.8167 kcal/mol (17203.2666 without restraints) Performing minimization step: 602. Total energy = 17204.2528 kcal/mol (17177.7212 without restraints) Performing minimization step: 603. Total energy = 17178.7584 kcal/mol (17152.2450 without restraints) Performing minimization step: 604. Total energy = 17153.3327 kcal/mol (17126.8377 without restraints) Performing minimization step: 605. Total energy = 17127.9752 kcal/mol (17101.4984 without restraints) Performing minimization step: 606. Total energy = 17102.6855 kcal/mol (17076.2270 without restraints) Performing minimization step: 607. Total energy = 17077.4640 kcal/mol (17051.0238 without restraints) Performing minimization step: 608. Total energy = 17052.3098 kcal/mol (17025.8878 without restraints) Performing minimization step: 609. Total energy = 17027.2227 kcal/mol (17000.8186 without restraints) Performing minimization step: 610. Total energy = 17002.2018 kcal/mol (16975.8159 without restraints) Performing minimization step: 611. Total energy = 16977.2466 kcal/mol (16950.8788 without restraints) Performing minimization step: 612. Total energy = 16952.3582 kcal/mol (16926.0084 without restraints) Performing minimization step: 613. Total energy = 16927.5354 kcal/mol (16901.2036 without restraints) Performing minimization step: 614. Total energy = 16902.7777 kcal/mol (16876.4640 without restraints) Performing minimization step: 615. Total energy = 16878.0859 kcal/mol (16851.7902 without restraints) Performing minimization step: 616. Total energy = 16853.4581 kcal/mol (16827.1802 without restraints) Performing minimization step: 617. Total energy = 16828.8944 kcal/mol (16802.6345 without restraints) Performing minimization step: 618. Total energy = 16804.3946 kcal/mol (16778.1525 without restraints) Performing minimization step: 619. Total energy = 16779.9590 kcal/mol (16753.7346 without restraints) Performing minimization step: 620. Total energy = 16755.5864 kcal/mol (16729.3799 without restraints) Performing minimization step: 621. Total energy = 16731.2769 kcal/mol (16705.0882 without restraints) Performing minimization step: 622. Total energy = 16707.0311 kcal/mol (16680.8602 without restraints) Performing minimization step: 623. Total energy = 16682.8467 kcal/mol (16656.6935 without restraints) Performing minimization step: 624. Total energy = 16658.7250 kcal/mol (16632.5895 without restraints) Performing minimization step: 625. Total energy = 16634.6647 kcal/mol (16608.5469 without restraints) Performing minimization step: 626. Total energy = 16610.6659 kcal/mol (16584.5657 without restraints) Performing minimization step: 627. Total energy = 16586.7284 kcal/mol (16560.6457 without restraints) Performing minimization step: 628. Total energy = 16562.8520 kcal/mol (16536.7869 without restraints) Performing minimization step: 629. Total energy = 16539.0361 kcal/mol (16512.9885 without restraints) Performing minimization step: 630. Total energy = 16515.2808 kcal/mol (16489.2509 without restraints) Performing minimization step: 631. Total energy = 16491.5858 kcal/mol (16465.5733 without restraints) Performing minimization step: 632. Total energy = 16467.9499 kcal/mol (16441.9550 without restraints) Performing minimization step: 633. Total energy = 16444.3738 kcal/mol (16418.3963 without restraints) Performing minimization step: 634. Total energy = 16420.8569 kcal/mol (16394.8968 without restraints) Performing minimization step: 635. Total energy = 16397.3991 kcal/mol (16371.4565 without restraints) Performing minimization step: 636. Total energy = 16374.0002 kcal/mol (16348.0749 without restraints) Performing minimization step: 637. Total energy = 16350.6596 kcal/mol (16324.7516 without restraints) Performing minimization step: 638. Total energy = 16327.3772 kcal/mol (16301.4866 without restraints) Performing minimization step: 639. Total energy = 16304.1528 kcal/mol (16278.2794 without restraints) Performing minimization step: 640. Total energy = 16280.9861 kcal/mol (16255.1301 without restraints) Performing minimization step: 641. Total energy = 16257.8767 kcal/mol (16232.0377 without restraints) Performing minimization step: 642. Total energy = 16234.8241 kcal/mol (16209.0024 without restraints) Performing minimization step: 643. Total energy = 16211.8283 kcal/mol (16186.0240 without restraints) Performing minimization step: 644. Total energy = 16188.8898 kcal/mol (16163.1025 without restraints) Performing minimization step: 645. Total energy = 16166.0073 kcal/mol (16140.2372 without restraints) Performing minimization step: 646. Total energy = 16143.1812 kcal/mol (16117.4282 without restraints) Performing minimization step: 647. Total energy = 16120.4108 kcal/mol (16094.6749 without restraints) Performing minimization step: 648. Total energy = 16097.6961 kcal/mol (16071.9772 without restraints) Performing minimization step: 649. Total energy = 16075.0369 kcal/mol (16049.3351 without restraints) Performing minimization step: 650. Total energy = 16052.4329 kcal/mol (16026.7482 without restraints) Performing minimization step: 651. Total energy = 16029.8837 kcal/mol (16004.2158 without restraints) Performing minimization step: 652. Total energy = 16007.3893 kcal/mol (15981.7385 without restraints) Performing minimization step: 653. Total energy = 15984.9492 kcal/mol (15959.3153 without restraints) Performing minimization step: 654. Total energy = 15962.5630 kcal/mol (15936.9461 without restraints) Performing minimization step: 655. Total energy = 15940.2316 kcal/mol (15914.6315 without restraints) Performing minimization step: 656. Total energy = 15917.9537 kcal/mol (15892.3706 without restraints) Performing minimization step: 657. Total energy = 15895.7301 kcal/mol (15870.1638 without restraints) Performing minimization step: 658. Total energy = 15873.5596 kcal/mol (15848.0102 without restraints) Performing minimization step: 659. Total energy = 15851.4417 kcal/mol (15825.9091 without restraints) Performing minimization step: 660. Total energy = 15829.3768 kcal/mol (15803.8610 without restraints) Performing minimization step: 661. Total energy = 15807.3647 kcal/mol (15781.8657 without restraints) Performing minimization step: 662. Total energy = 15785.4050 kcal/mol (15759.9227 without restraints) Performing minimization step: 663. Total energy = 15763.4976 kcal/mol (15738.0320 without restraints) Performing minimization step: 664. Total energy = 15741.6428 kcal/mol (15716.1939 without restraints) Performing minimization step: 665. Total energy = 15719.8395 kcal/mol (15694.4073 without restraints) Performing minimization step: 666. Total energy = 15698.0877 kcal/mol (15672.6721 without restraints) Performing minimization step: 667. Total energy = 15676.3875 kcal/mol (15650.9887 without restraints) Performing minimization step: 668. Total energy = 15654.7389 kcal/mol (15629.3566 without restraints) Performing minimization step: 669. Total energy = 15633.1417 kcal/mol (15607.7761 without restraints) Performing minimization step: 670. Total energy = 15611.5948 kcal/mol (15586.2457 without restraints) Performing minimization step: 671. Total energy = 15590.0986 kcal/mol (15564.7660 without restraints) Performing minimization step: 672. Total energy = 15568.6532 kcal/mol (15543.3371 without restraints) Performing minimization step: 673. Total energy = 15547.2578 kcal/mol (15521.9583 without restraints) Performing minimization step: 674. Total energy = 15525.9126 kcal/mol (15500.6296 without restraints) Performing minimization step: 675. Total energy = 15504.6170 kcal/mol (15479.3505 without restraints) Performing minimization step: 676. Total energy = 15483.3713 kcal/mol (15458.1213 without restraints) Performing minimization step: 677. Total energy = 15462.1754 kcal/mol (15436.9417 without restraints) Performing minimization step: 678. Total energy = 15441.0287 kcal/mol (15415.8114 without restraints) Performing minimization step: 679. Total energy = 15419.9309 kcal/mol (15394.7300 without restraints) Performing minimization step: 680. Total energy = 15398.8824 kcal/mol (15373.6978 without restraints) Performing minimization step: 681. Total energy = 15377.8823 kcal/mol (15352.7141 without restraints) Performing minimization step: 682. Total energy = 15356.9308 kcal/mol (15331.7789 without restraints) Performing minimization step: 683. Total energy = 15336.0274 kcal/mol (15310.8919 without restraints) Performing minimization step: 684. Total energy = 15315.1726 kcal/mol (15290.0533 without restraints) Performing minimization step: 685. Total energy = 15294.3659 kcal/mol (15269.2628 without restraints) Performing minimization step: 686. Total energy = 15273.6063 kcal/mol (15248.5195 without restraints) Performing minimization step: 687. Total energy = 15252.8951 kcal/mol (15227.8246 without restraints) Performing minimization step: 688. Total energy = 15232.2318 kcal/mol (15207.1775 without restraints) Performing minimization step: 689. Total energy = 15211.6153 kcal/mol (15186.5770 without restraints) Performing minimization step: 690. Total energy = 15191.0466 kcal/mol (15166.0246 without restraints) Performing minimization step: 691. Total energy = 15170.5249 kcal/mol (15145.5190 without restraints) Performing minimization step: 692. Total energy = 15150.0493 kcal/mol (15125.0596 without restraints) Performing minimization step: 693. Total energy = 15129.6208 kcal/mol (15104.6471 without restraints) Performing minimization step: 694. Total energy = 15109.2389 kcal/mol (15084.2814 without restraints) Performing minimization step: 695. Total energy = 15088.9035 kcal/mol (15063.9620 without restraints) Performing minimization step: 696. Total energy = 15068.6145 kcal/mol (15043.6891 without restraints) Performing minimization step: 697. Total energy = 15048.3716 kcal/mol (15023.4622 without restraints) Performing minimization step: 698. Total energy = 15028.1745 kcal/mol (15003.2811 without restraints) Performing minimization step: 699. Total energy = 15008.0229 kcal/mol (14983.1454 without restraints) Performing minimization step: 700. Total energy = 14987.9172 kcal/mol (14963.0558 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 701. Total energy = 14967.8566 kcal/mol (14943.0110 without restraints) Performing minimization step: 702. Total energy = 14947.8413 kcal/mol (14923.0117 without restraints) Performing minimization step: 703. Total energy = 14927.8714 kcal/mol (14903.0577 without restraints) Performing minimization step: 704. Total energy = 14907.9463 kcal/mol (14883.1485 without restraints) Performing minimization step: 705. Total energy = 14888.0659 kcal/mol (14863.2840 without restraints) Performing minimization step: 706. Total energy = 14868.2307 kcal/mol (14843.4646 without restraints) Performing minimization step: 707. Total energy = 14848.4396 kcal/mol (14823.6894 without restraints) Performing minimization step: 708. Total energy = 14828.6924 kcal/mol (14803.9580 without restraints) Performing minimization step: 709. Total energy = 14808.9899 kcal/mol (14784.2713 without restraints) Performing minimization step: 710. Total energy = 14789.3315 kcal/mol (14764.6286 without restraints) Performing minimization step: 711. Total energy = 14769.7171 kcal/mol (14745.0300 without restraints) Performing minimization step: 712. Total energy = 14750.1465 kcal/mol (14725.4753 without restraints) Performing minimization step: 713. Total energy = 14730.6196 kcal/mol (14705.9639 without restraints) Performing minimization step: 714. Total energy = 14711.1364 kcal/mol (14686.4965 without restraints) Performing minimization step: 715. Total energy = 14691.6965 kcal/mol (14667.0722 without restraints) Performing minimization step: 716. Total energy = 14672.2997 kcal/mol (14647.6912 without restraints) Performing minimization step: 717. Total energy = 14652.9458 kcal/mol (14628.3527 without restraints) Performing minimization step: 718. Total energy = 14633.6350 kcal/mol (14609.0577 without restraints) Performing minimization step: 719. Total energy = 14614.3669 kcal/mol (14589.8052 without restraints) Performing minimization step: 720. Total energy = 14595.1417 kcal/mol (14570.5955 without restraints) Performing minimization step: 721. Total energy = 14575.9587 kcal/mol (14551.4281 without restraints) Performing minimization step: 722. Total energy = 14556.8182 kcal/mol (14532.3032 without restraints) Performing minimization step: 723. Total energy = 14537.7200 kcal/mol (14513.2206 without restraints) Performing minimization step: 724. Total energy = 14518.6642 kcal/mol (14494.1803 without restraints) Performing minimization step: 725. Total energy = 14499.6498 kcal/mol (14475.1812 without restraints) Performing minimization step: 726. Total energy = 14480.6775 kcal/mol (14456.2245 without restraints) Performing minimization step: 727. Total energy = 14461.7471 kcal/mol (14437.3095 without restraints) Performing minimization step: 728. Total energy = 14442.8581 kcal/mol (14418.4359 without restraints) Performing minimization step: 729. Total energy = 14424.0108 kcal/mol (14399.6041 without restraints) Performing minimization step: 730. Total energy = 14405.2048 kcal/mol (14380.8134 without restraints) Performing minimization step: 731. Total energy = 14386.4400 kcal/mol (14362.0640 without restraints) Performing minimization step: 732. Total energy = 14367.7165 kcal/mol (14343.3559 without restraints) Performing minimization step: 733. Total energy = 14349.0338 kcal/mol (14324.6886 without restraints) Performing minimization step: 734. Total energy = 14330.3924 kcal/mol (14306.0625 without restraints) Performing minimization step: 735. Total energy = 14311.7913 kcal/mol (14287.4768 without restraints) Performing minimization step: 736. Total energy = 14293.2310 kcal/mol (14268.9317 without restraints) Performing minimization step: 737. Total energy = 14274.7115 kcal/mol (14250.4277 without restraints) Performing minimization step: 738. Total energy = 14256.2321 kcal/mol (14231.9633 without restraints) Performing minimization step: 739. Total energy = 14237.7927 kcal/mol (14213.5392 without restraints) Performing minimization step: 740. Total energy = 14219.3935 kcal/mol (14195.1550 without restraints) Performing minimization step: 741. Total energy = 14201.0345 kcal/mol (14176.8114 without restraints) Performing minimization step: 742. Total energy = 14182.7154 kcal/mol (14158.5075 without restraints) Performing minimization step: 743. Total energy = 14164.4360 kcal/mol (14140.2433 without restraints) Performing minimization step: 744. Total energy = 14146.1966 kcal/mol (14122.0190 without restraints) Performing minimization step: 745. Total energy = 14127.9965 kcal/mol (14103.8340 without restraints) Performing minimization step: 746. Total energy = 14109.8354 kcal/mol (14085.6880 without restraints) Performing minimization step: 747. Total energy = 14091.7140 kcal/mol (14067.5817 without restraints) Performing minimization step: 748. Total energy = 14073.6320 kcal/mol (14049.5149 without restraints) Performing minimization step: 749. Total energy = 14055.5891 kcal/mol (14031.4869 without restraints) Performing minimization step: 750. Total energy = 14037.5849 kcal/mol (14013.4978 without restraints) Performing minimization step: 751. Total energy = 14019.6195 kcal/mol (13995.5475 without restraints) Performing minimization step: 752. Total energy = 14001.6935 kcal/mol (13977.6364 without restraints) Performing minimization step: 753. Total energy = 13983.8059 kcal/mol (13959.7638 without restraints) Performing minimization step: 754. Total energy = 13965.9566 kcal/mol (13941.9295 without restraints) Performing minimization step: 755. Total energy = 13948.1458 kcal/mol (13924.1337 without restraints) Performing minimization step: 756. Total energy = 13930.3735 kcal/mol (13906.3763 without restraints) Performing minimization step: 757. Total energy = 13912.6391 kcal/mol (13888.6568 without restraints) Performing minimization step: 758. Total energy = 13894.9427 kcal/mol (13870.9753 without restraints) Performing minimization step: 759. Total energy = 13877.2847 kcal/mol (13853.3320 without restraints) Performing minimization step: 760. Total energy = 13859.6645 kcal/mol (13835.7268 without restraints) Performing minimization step: 761. Total energy = 13842.0818 kcal/mol (13818.1590 without restraints) Performing minimization step: 762. Total energy = 13824.5374 kcal/mol (13800.6294 without restraints) Performing minimization step: 763. Total energy = 13807.0302 kcal/mol (13783.1370 without restraints) Performing minimization step: 764. Total energy = 13789.5604 kcal/mol (13765.6820 without restraints) Performing minimization step: 765. Total energy = 13772.1278 kcal/mol (13748.2642 without restraints) Performing minimization step: 766. Total energy = 13754.7332 kcal/mol (13730.8843 without restraints) Performing minimization step: 767. Total energy = 13737.3753 kcal/mol (13713.5411 without restraints) Performing minimization step: 768. Total energy = 13720.0541 kcal/mol (13696.2346 without restraints) Performing minimization step: 769. Total energy = 13702.7699 kcal/mol (13678.9653 without restraints) Performing minimization step: 770. Total energy = 13685.5231 kcal/mol (13661.7330 without restraints) Performing minimization step: 771. Total energy = 13668.3129 kcal/mol (13644.5374 without restraints) Performing minimization step: 772. Total energy = 13651.1387 kcal/mol (13627.3779 without restraints) Performing minimization step: 773. Total energy = 13634.0015 kcal/mol (13610.2554 without restraints) Performing minimization step: 774. Total energy = 13616.9008 kcal/mol (13593.1693 without restraints) Performing minimization step: 775. Total energy = 13599.8365 kcal/mol (13576.1195 without restraints) Performing minimization step: 776. Total energy = 13582.8083 kcal/mol (13559.1059 without restraints) Performing minimization step: 777. Total energy = 13565.8163 kcal/mol (13542.1285 without restraints) Performing minimization step: 778. Total energy = 13548.8605 kcal/mol (13525.1872 without restraints) Performing minimization step: 779. Total energy = 13531.9403 kcal/mol (13508.2815 without restraints) Performing minimization step: 780. Total energy = 13515.0564 kcal/mol (13491.4122 without restraints) Performing minimization step: 781. Total energy = 13498.2084 kcal/mol (13474.5787 without restraints) Performing minimization step: 782. Total energy = 13481.3962 kcal/mol (13457.7809 without restraints) Performing minimization step: 783. Total energy = 13464.6193 kcal/mol (13441.0184 without restraints) Performing minimization step: 784. Total energy = 13447.8779 kcal/mol (13424.2914 without restraints) Performing minimization step: 785. Total energy = 13431.1720 kcal/mol (13407.5998 without restraints) Performing minimization step: 786. Total energy = 13414.5012 kcal/mol (13390.9435 without restraints) Performing minimization step: 787. Total energy = 13397.8653 kcal/mol (13374.3220 without restraints) Performing minimization step: 788. Total energy = 13381.2652 kcal/mol (13357.7362 without restraints) Performing minimization step: 789. Total energy = 13364.6999 kcal/mol (13341.1852 without restraints) Performing minimization step: 790. Total energy = 13348.1694 kcal/mol (13324.6691 without restraints) Performing minimization step: 791. Total energy = 13331.6738 kcal/mol (13308.1877 without restraints) Performing minimization step: 792. Total energy = 13315.2129 kcal/mol (13291.7412 without restraints) Performing minimization step: 793. Total energy = 13298.7873 kcal/mol (13275.3298 without restraints) Performing minimization step: 794. Total energy = 13282.3962 kcal/mol (13258.9529 without restraints) Performing minimization step: 795. Total energy = 13266.0392 kcal/mol (13242.6101 without restraints) Performing minimization step: 796. Total energy = 13249.7167 kcal/mol (13226.3019 without restraints) Performing minimization step: 797. Total energy = 13233.4288 kcal/mol (13210.0281 without restraints) Performing minimization step: 798. Total energy = 13217.1745 kcal/mol (13193.7880 without restraints) Performing minimization step: 799. Total energy = 13200.9551 kcal/mol (13177.5827 without restraints) Performing minimization step: 800. Total energy = 13184.7691 kcal/mol (13161.4110 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 801. Total energy = 13168.6175 kcal/mol (13145.2734 without restraints) Performing minimization step: 802. Total energy = 13152.5004 kcal/mol (13129.1705 without restraints) Performing minimization step: 803. Total energy = 13136.4160 kcal/mol (13113.1001 without restraints) Performing minimization step: 804. Total energy = 13120.3654 kcal/mol (13097.0636 without restraints) Performing minimization step: 805. Total energy = 13104.3488 kcal/mol (13081.0611 without restraints) Performing minimization step: 806. Total energy = 13088.3655 kcal/mol (13065.0918 without restraints) Performing minimization step: 807. Total energy = 13072.4157 kcal/mol (13049.1561 without restraints) Performing minimization step: 808. Total energy = 13056.4993 kcal/mol (13033.2535 without restraints) Performing minimization step: 809. Total energy = 13040.6159 kcal/mol (13017.3842 without restraints) Performing minimization step: 810. Total energy = 13024.7660 kcal/mol (13001.5482 without restraints) Performing minimization step: 811. Total energy = 13008.9490 kcal/mol (12985.7451 without restraints) Performing minimization step: 812. Total energy = 12993.1648 kcal/mol (12969.9748 without restraints) Performing minimization step: 813. Total energy = 12977.4138 kcal/mol (12954.2377 without restraints) Performing minimization step: 814. Total energy = 12961.6960 kcal/mol (12938.5340 without restraints) Performing minimization step: 815. Total energy = 12946.0109 kcal/mol (12922.8626 without restraints) Performing minimization step: 816. Total energy = 12930.3580 kcal/mol (12907.2235 without restraints) Performing minimization step: 817. Total energy = 12914.7383 kcal/mol (12891.6176 without restraints) Performing minimization step: 818. Total energy = 12899.1507 kcal/mol (12876.0439 without restraints) Performing minimization step: 819. Total energy = 12883.5957 kcal/mol (12860.5026 without restraints) Performing minimization step: 820. Total energy = 12868.0734 kcal/mol (12844.9941 without restraints) Performing minimization step: 821. Total energy = 12852.5832 kcal/mol (12829.5176 without restraints) Performing minimization step: 822. Total energy = 12837.1250 kcal/mol (12814.0732 without restraints) Performing minimization step: 823. Total energy = 12821.6986 kcal/mol (12798.6603 without restraints) Performing minimization step: 824. Total energy = 12806.3043 kcal/mol (12783.2799 without restraints) Performing minimization step: 825. Total energy = 12790.9429 kcal/mol (12767.9321 without restraints) Performing minimization step: 826. Total energy = 12775.6129 kcal/mol (12752.6159 without restraints) Performing minimization step: 827. Total energy = 12760.3144 kcal/mol (12737.3310 without restraints) Performing minimization step: 828. Total energy = 12745.0479 kcal/mol (12722.0781 without restraints) Performing minimization step: 829. Total energy = 12729.8131 kcal/mol (12706.8569 without restraints) Performing minimization step: 830. Total energy = 12714.6099 kcal/mol (12691.6673 without restraints) Performing minimization step: 831. Total energy = 12699.4389 kcal/mol (12676.5099 without restraints) Performing minimization step: 832. Total energy = 12684.2986 kcal/mol (12661.3830 without restraints) Performing minimization step: 833. Total energy = 12669.1897 kcal/mol (12646.2877 without restraints) Performing minimization step: 834. Total energy = 12654.1120 kcal/mol (12631.2235 without restraints) Performing minimization step: 835. Total energy = 12639.0655 kcal/mol (12616.1906 without restraints) Performing minimization step: 836. Total energy = 12624.0504 kcal/mol (12601.1889 without restraints) Performing minimization step: 837. Total energy = 12609.0664 kcal/mol (12586.2184 without restraints) Performing minimization step: 838. Total energy = 12594.1131 kcal/mol (12571.2785 without restraints) Performing minimization step: 839. Total energy = 12579.1907 kcal/mol (12556.3696 without restraints) Performing minimization step: 840. Total energy = 12564.2992 kcal/mol (12541.4915 without restraints) Performing minimization step: 841. Total energy = 12549.4384 kcal/mol (12526.6440 without restraints) Performing minimization step: 842. Total energy = 12534.6076 kcal/mol (12511.8266 without restraints) Performing minimization step: 843. Total energy = 12519.8080 kcal/mol (12497.0403 without restraints) Performing minimization step: 844. Total energy = 12505.0389 kcal/mol (12482.2846 without restraints) Performing minimization step: 845. Total energy = 12490.2998 kcal/mol (12467.5587 without restraints) Performing minimization step: 846. Total energy = 12475.5915 kcal/mol (12452.8637 without restraints) Performing minimization step: 847. Total energy = 12460.9135 kcal/mol (12438.1990 without restraints) Performing minimization step: 848. Total energy = 12446.2659 kcal/mol (12423.5647 without restraints) Performing minimization step: 849. Total energy = 12431.6486 kcal/mol (12408.9606 without restraints) Performing minimization step: 850. Total energy = 12417.0614 kcal/mol (12394.3867 without restraints) Performing minimization step: 851. Total energy = 12402.5041 kcal/mol (12379.8426 without restraints) Performing minimization step: 852. Total energy = 12387.9767 kcal/mol (12365.3283 without restraints) Performing minimization step: 853. Total energy = 12373.4792 kcal/mol (12350.8441 without restraints) Performing minimization step: 854. Total energy = 12359.0116 kcal/mol (12336.3895 without restraints) Performing minimization step: 855. Total energy = 12344.5735 kcal/mol (12321.9644 without restraints) Performing minimization step: 856. Total energy = 12330.1652 kcal/mol (12307.5694 without restraints) Performing minimization step: 857. Total energy = 12315.7865 kcal/mol (12293.2037 without restraints) Performing minimization step: 858. Total energy = 12301.4373 kcal/mol (12278.8676 without restraints) Performing minimization step: 859. Total energy = 12287.1175 kcal/mol (12264.5608 without restraints) Performing minimization step: 860. Total energy = 12272.8269 kcal/mol (12250.2832 without restraints) Performing minimization step: 861. Total energy = 12258.5658 kcal/mol (12236.0351 without restraints) Performing minimization step: 862. Total energy = 12244.3333 kcal/mol (12221.8156 without restraints) Performing minimization step: 863. Total energy = 12230.1308 kcal/mol (12207.6261 without restraints) Performing minimization step: 864. Total energy = 12215.9569 kcal/mol (12193.4652 without restraints) Performing minimization step: 865. Total energy = 12201.8124 kcal/mol (12179.3336 without restraints) Performing minimization step: 866. Total energy = 12187.6967 kcal/mol (12165.2309 without restraints) Performing minimization step: 867. Total energy = 12173.6101 kcal/mol (12151.1570 without restraints) Performing minimization step: 868. Total energy = 12159.5521 kcal/mol (12137.1120 without restraints) Performing minimization step: 869. Total energy = 12145.5231 kcal/mol (12123.0959 without restraints) Performing minimization step: 870. Total energy = 12131.5226 kcal/mol (12109.1083 without restraints) Performing minimization step: 871. Total energy = 12117.5517 kcal/mol (12095.1501 without restraints) Performing minimization step: 872. Total energy = 12103.6080 kcal/mol (12081.2192 without restraints) Performing minimization step: 873. Total energy = 12089.6933 kcal/mol (12067.3173 without restraints) Performing minimization step: 874. Total energy = 12075.8068 kcal/mol (12053.4436 without restraints) Performing minimization step: 875. Total energy = 12061.9487 kcal/mol (12039.5982 without restraints) Performing minimization step: 876. Total energy = 12048.1189 kcal/mol (12025.7811 without restraints) Performing minimization step: 877. Total energy = 12034.3175 kcal/mol (12011.9924 without restraints) Performing minimization step: 878. Total energy = 12020.5438 kcal/mol (11998.2315 without restraints) Performing minimization step: 879. Total energy = 12006.7988 kcal/mol (11984.4992 without restraints) Performing minimization step: 880. Total energy = 11993.0815 kcal/mol (11970.7946 without restraints) Performing minimization step: 881. Total energy = 11979.3924 kcal/mol (11957.1180 without restraints) Performing minimization step: 882. Total energy = 11965.7309 kcal/mol (11943.4691 without restraints) Performing minimization step: 883. Total energy = 11952.0970 kcal/mol (11929.8478 without restraints) Performing minimization step: 884. Total energy = 11938.4908 kcal/mol (11916.2541 without restraints) Performing minimization step: 885. Total energy = 11924.9124 kcal/mol (11902.6883 without restraints) Performing minimization step: 886. Total energy = 11911.3612 kcal/mol (11889.1497 without restraints) Performing minimization step: 887. Total energy = 11897.8374 kcal/mol (11875.6384 without restraints) Performing minimization step: 888. Total energy = 11884.3423 kcal/mol (11862.1557 without restraints) Performing minimization step: 889. Total energy = 11870.8740 kcal/mol (11848.7000 without restraints) Performing minimization step: 890. Total energy = 11857.4332 kcal/mol (11835.2716 without restraints) Performing minimization step: 891. Total energy = 11844.0196 kcal/mol (11821.8704 without restraints) Performing minimization step: 892. Total energy = 11830.6328 kcal/mol (11808.4961 without restraints) Performing minimization step: 893. Total energy = 11817.2734 kcal/mol (11795.1490 without restraints) Performing minimization step: 894. Total energy = 11803.9414 kcal/mol (11781.8297 without restraints) Performing minimization step: 895. Total energy = 11790.6365 kcal/mol (11768.5369 without restraints) Performing minimization step: 896. Total energy = 11777.3584 kcal/mol (11755.2711 without restraints) Performing minimization step: 897. Total energy = 11764.1071 kcal/mol (11742.0322 without restraints) Performing minimization step: 898. Total energy = 11750.8830 kcal/mol (11728.8204 without restraints) Performing minimization step: 899. Total energy = 11737.6853 kcal/mol (11715.6350 without restraints) Performing minimization step: 900. Total energy = 11724.5142 kcal/mol (11702.4762 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 901. Total energy = 11711.3694 kcal/mol (11689.3435 without restraints) Performing minimization step: 902. Total energy = 11698.2516 kcal/mol (11676.2380 without restraints) Performing minimization step: 903. Total energy = 11685.1606 kcal/mol (11663.1593 without restraints) Performing minimization step: 904. Total energy = 11672.0958 kcal/mol (11650.1065 without restraints) Performing minimization step: 905. Total energy = 11659.0575 kcal/mol (11637.0806 without restraints) Performing minimization step: 906. Total energy = 11646.0457 kcal/mol (11624.0809 without restraints) Performing minimization step: 907. Total energy = 11633.0600 kcal/mol (11611.1073 without restraints) Performing minimization step: 908. Total energy = 11620.1007 kcal/mol (11598.1601 without restraints) Performing minimization step: 909. Total energy = 11607.1674 kcal/mol (11585.2390 without restraints) Performing minimization step: 910. Total energy = 11594.2602 kcal/mol (11572.3438 without restraints) Performing minimization step: 911. Total energy = 11581.3791 kcal/mol (11559.4748 without restraints) Performing minimization step: 912. Total energy = 11568.5243 kcal/mol (11546.6320 without restraints) Performing minimization step: 913. Total energy = 11555.6946 kcal/mol (11533.8144 without restraints) Performing minimization step: 914. Total energy = 11542.8911 kcal/mol (11521.0228 without restraints) Performing minimization step: 915. Total energy = 11530.1132 kcal/mol (11508.2569 without restraints) Performing minimization step: 916. Total energy = 11517.3611 kcal/mol (11495.5168 without restraints) Performing minimization step: 917. Total energy = 11504.6349 kcal/mol (11482.8025 without restraints) Performing minimization step: 918. Total energy = 11491.9340 kcal/mol (11470.1136 without restraints) Performing minimization step: 919. Total energy = 11479.2585 kcal/mol (11457.4500 without restraints) Performing minimization step: 920. Total energy = 11466.6087 kcal/mol (11444.8120 without restraints) Performing minimization step: 921. Total energy = 11453.9840 kcal/mol (11432.1992 without restraints) Performing minimization step: 922. Total energy = 11441.3849 kcal/mol (11419.6120 without restraints) Performing minimization step: 923. Total energy = 11428.8113 kcal/mol (11407.0501 without restraints) Performing minimization step: 924. Total energy = 11416.2631 kcal/mol (11394.5138 without restraints) Performing minimization step: 925. Total energy = 11403.7391 kcal/mol (11382.0016 without restraints) Performing minimization step: 926. Total energy = 11391.2412 kcal/mol (11369.5154 without restraints) Performing minimization step: 927. Total energy = 11378.7680 kcal/mol (11357.0542 without restraints) Performing minimization step: 928. Total energy = 11366.3196 kcal/mol (11344.6173 without restraints) Performing minimization step: 929. Total energy = 11353.8962 kcal/mol (11332.2056 without restraints) Performing minimization step: 930. Total energy = 11341.4983 kcal/mol (11319.8196 without restraints) Performing minimization step: 931. Total energy = 11329.1254 kcal/mol (11307.4582 without restraints) Performing minimization step: 932. Total energy = 11316.7766 kcal/mol (11295.1212 without restraints) Performing minimization step: 933. Total energy = 11304.4528 kcal/mol (11282.8088 without restraints) Performing minimization step: 934. Total energy = 11292.1532 kcal/mol (11270.5209 without restraints) Performing minimization step: 935. Total energy = 11279.8787 kcal/mol (11258.2582 without restraints) Performing minimization step: 936. Total energy = 11267.6290 kcal/mol (11246.0198 without restraints) Performing minimization step: 937. Total energy = 11255.4031 kcal/mol (11233.8058 without restraints) Performing minimization step: 938. Total energy = 11243.2018 kcal/mol (11221.6157 without restraints) Performing minimization step: 939. Total energy = 11231.0242 kcal/mol (11209.4497 without restraints) Performing minimization step: 940. Total energy = 11218.8710 kcal/mol (11197.3080 without restraints) Performing minimization step: 941. Total energy = 11206.7417 kcal/mol (11185.1901 without restraints) Performing minimization step: 942. Total energy = 11194.6369 kcal/mol (11173.0968 without restraints) Performing minimization step: 943. Total energy = 11182.5564 kcal/mol (11161.0278 without restraints) Performing minimization step: 944. Total energy = 11170.5001 kcal/mol (11148.9830 without restraints) Performing minimization step: 945. Total energy = 11158.4678 kcal/mol (11136.9621 without restraints) Performing minimization step: 946. Total energy = 11146.4594 kcal/mol (11124.9650 without restraints) Performing minimization step: 947. Total energy = 11134.4750 kcal/mol (11112.9919 without restraints) Performing minimization step: 948. Total energy = 11122.5139 kcal/mol (11101.0422 without restraints) Performing minimization step: 949. Total energy = 11110.5766 kcal/mol (11089.1163 without restraints) Performing minimization step: 950. Total energy = 11098.6633 kcal/mol (11077.2142 without restraints) Performing minimization step: 951. Total energy = 11086.7736 kcal/mol (11065.3359 without restraints) Performing minimization step: 952. Total energy = 11074.9075 kcal/mol (11053.4808 without restraints) Performing minimization step: 953. Total energy = 11063.0650 kcal/mol (11041.6498 without restraints) Performing minimization step: 954. Total energy = 11051.2463 kcal/mol (11029.8423 without restraints) Performing minimization step: 955. Total energy = 11039.4506 kcal/mol (11018.0578 without restraints) Performing minimization step: 956. Total energy = 11027.6782 kcal/mol (11006.2966 without restraints) Performing minimization step: 957. Total energy = 11015.9288 kcal/mol (10994.5583 without restraints) Performing minimization step: 958. Total energy = 11004.2031 kcal/mol (10982.8440 without restraints) Performing minimization step: 959. Total energy = 10992.5010 kcal/mol (10971.1528 without restraints) Performing minimization step: 960. Total energy = 10980.8217 kcal/mol (10959.4847 without restraints) Performing minimization step: 961. Total energy = 10969.1656 kcal/mol (10947.8397 without restraints) Performing minimization step: 962. Total energy = 10957.5317 kcal/mol (10936.2168 without restraints) Performing minimization step: 963. Total energy = 10945.9213 kcal/mol (10924.6175 without restraints) Performing minimization step: 964. Total energy = 10934.3340 kcal/mol (10913.0412 without restraints) Performing minimization step: 965. Total energy = 10922.7692 kcal/mol (10901.4874 without restraints) Performing minimization step: 966. Total energy = 10911.2276 kcal/mol (10889.9568 without restraints) Performing minimization step: 967. Total energy = 10899.7092 kcal/mol (10878.4495 without restraints) Performing minimization step: 968. Total energy = 10888.2131 kcal/mol (10866.9644 without restraints) Performing minimization step: 969. Total energy = 10876.7399 kcal/mol (10855.5021 without restraints) Performing minimization step: 970. Total energy = 10865.2888 kcal/mol (10844.0619 without restraints) Performing minimization step: 971. Total energy = 10853.8605 kcal/mol (10832.6444 without restraints) Performing minimization step: 972. Total energy = 10842.4543 kcal/mol (10821.2491 without restraints) Performing minimization step: 973. Total energy = 10831.0707 kcal/mol (10809.8764 without restraints) Performing minimization step: 974. Total energy = 10819.7090 kcal/mol (10798.5255 without restraints) Performing minimization step: 975. Total energy = 10808.3709 kcal/mol (10787.1983 without restraints) Performing minimization step: 976. Total energy = 10797.0544 kcal/mol (10775.8926 without restraints) Performing minimization step: 977. Total energy = 10785.7591 kcal/mol (10764.6081 without restraints) Performing minimization step: 978. Total energy = 10774.4864 kcal/mol (10753.3461 without restraints) Performing minimization step: 979. Total energy = 10763.2362 kcal/mol (10742.1067 without restraints) Performing minimization step: 980. Total energy = 10752.0079 kcal/mol (10730.8891 without restraints) Performing minimization step: 981. Total energy = 10740.8013 kcal/mol (10719.6932 without restraints) Performing minimization step: 982. Total energy = 10729.6168 kcal/mol (10708.5194 without restraints) Performing minimization step: 983. Total energy = 10718.4539 kcal/mol (10697.3672 without restraints) Performing minimization step: 984. Total energy = 10707.3137 kcal/mol (10686.2376 without restraints) Performing minimization step: 985. Total energy = 10696.1947 kcal/mol (10675.1293 without restraints) Performing minimization step: 986. Total energy = 10685.0974 kcal/mol (10664.0426 without restraints) Performing minimization step: 987. Total energy = 10674.0221 kcal/mol (10652.9779 without restraints) Performing minimization step: 988. Total energy = 10662.9680 kcal/mol (10641.9344 without restraints) Performing minimization step: 989. Total energy = 10651.9352 kcal/mol (10630.9122 without restraints) Performing minimization step: 990. Total energy = 10640.9246 kcal/mol (10619.9121 without restraints) Performing minimization step: 991. Total energy = 10629.9354 kcal/mol (10608.9335 without restraints) Performing minimization step: 992. Total energy = 10618.9672 kcal/mol (10597.9758 without restraints) Performing minimization step: 993. Total energy = 10608.0200 kcal/mol (10587.0390 without restraints) Performing minimization step: 994. Total energy = 10597.0949 kcal/mol (10576.1245 without restraints) Performing minimization step: 995. Total energy = 10586.1908 kcal/mol (10565.2308 without restraints) Performing minimization step: 996. Total energy = 10575.3077 kcal/mol (10554.3580 without restraints) Performing minimization step: 997. Total energy = 10564.4456 kcal/mol (10543.5064 without restraints) Performing minimization step: 998. Total energy = 10553.6045 kcal/mol (10532.6757 without restraints) Performing minimization step: 999. Total energy = 10542.7842 kcal/mol (10521.8657 without restraints) Performing minimization step: 1000. Total energy = 10531.9852 kcal/mol (10511.0771 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 10521.2071 kcal/mol (10500.3093 without restraints) Performing minimization step: 1002. Total energy = 10510.4501 kcal/mol (10489.5626 without restraints) Performing minimization step: 1003. Total energy = 10499.7136 kcal/mol (10478.8365 without restraints) Performing minimization step: 1004. Total energy = 10488.9979 kcal/mol (10468.1310 without restraints) Performing minimization step: 1005. Total energy = 10478.3028 kcal/mol (10457.4462 without restraints) Performing minimization step: 1006. Total energy = 10467.6282 kcal/mol (10446.7819 without restraints) Performing minimization step: 1007. Total energy = 10456.9748 kcal/mol (10436.1386 without restraints) Performing minimization step: 1008. Total energy = 10446.3418 kcal/mol (10425.5158 without restraints) Performing minimization step: 1009. Total energy = 10435.7292 kcal/mol (10414.9135 without restraints) Performing minimization step: 1010. Total energy = 10425.1374 kcal/mol (10404.3317 without restraints) Performing minimization step: 1011. Total energy = 10414.5659 kcal/mol (10393.7704 without restraints) Performing minimization step: 1012. Total energy = 10404.0146 kcal/mol (10383.2295 without restraints) Performing minimization step: 1013. Total energy = 10393.4836 kcal/mol (10372.7084 without restraints) Performing minimization step: 1014. Total energy = 10382.9727 kcal/mol (10362.2075 without restraints) Performing minimization step: 1015. Total energy = 10372.4819 kcal/mol (10351.7269 without restraints) Performing minimization step: 1016. Total energy = 10362.0116 kcal/mol (10341.2667 without restraints) Performing minimization step: 1017. Total energy = 10351.5609 kcal/mol (10330.8259 without restraints) Performing minimization step: 1018. Total energy = 10341.1302 kcal/mol (10320.4054 without restraints) Performing minimization step: 1019. Total energy = 10330.7199 kcal/mol (10310.0049 without restraints) Performing minimization step: 1020. Total energy = 10320.3293 kcal/mol (10299.6243 without restraints) Performing minimization step: 1021. Total energy = 10309.9586 kcal/mol (10289.2636 without restraints) Performing minimization step: 1022. Total energy = 10299.6075 kcal/mol (10278.9224 without restraints) Performing minimization step: 1023. Total energy = 10289.2765 kcal/mol (10268.6011 without restraints) Performing minimization step: 1024. Total energy = 10278.9647 kcal/mol (10258.2994 without restraints) Performing minimization step: 1025. Total energy = 10268.6734 kcal/mol (10248.0181 without restraints) Performing minimization step: 1026. Total energy = 10258.4018 kcal/mol (10237.7561 without restraints) Performing minimization step: 1027. Total energy = 10248.1494 kcal/mol (10227.5138 without restraints) Performing minimization step: 1028. Total energy = 10237.9166 kcal/mol (10217.2907 without restraints) Performing minimization step: 1029. Total energy = 10227.7031 kcal/mol (10207.0870 without restraints) Performing minimization step: 1030. Total energy = 10217.5092 kcal/mol (10196.9029 without restraints) Performing minimization step: 1031. Total energy = 10207.3345 kcal/mol (10186.7380 without restraints) Performing minimization step: 1032. Total energy = 10197.1793 kcal/mol (10176.5927 without restraints) Performing minimization step: 1033. Total energy = 10187.0437 kcal/mol (10166.4668 without restraints) Performing minimization step: 1034. Total energy = 10176.9267 kcal/mol (10156.3594 without restraints) Performing minimization step: 1035. Total energy = 10166.8291 kcal/mol (10146.2715 without restraints) Performing minimization step: 1036. Total energy = 10156.7504 kcal/mol (10136.2025 without restraints) Performing minimization step: 1037. Total energy = 10146.6909 kcal/mol (10126.1527 without restraints) Performing minimization step: 1038. Total energy = 10136.6505 kcal/mol (10116.1219 without restraints) Performing minimization step: 1039. Total energy = 10126.6294 kcal/mol (10106.1105 without restraints) Performing minimization step: 1040. Total energy = 10116.6273 kcal/mol (10096.1179 without restraints) Performing minimization step: 1041. Total energy = 10106.6437 kcal/mol (10086.1440 without restraints) Performing minimization step: 1042. Total energy = 10096.6792 kcal/mol (10076.1890 without restraints) Performing minimization step: 1043. Total energy = 10086.7333 kcal/mol (10066.2527 without restraints) Performing minimization step: 1044. Total energy = 10076.8061 kcal/mol (10056.3350 without restraints) Performing minimization step: 1045. Total energy = 10066.8977 kcal/mol (10046.4363 without restraints) Performing minimization step: 1046. Total energy = 10057.0080 kcal/mol (10036.5560 without restraints) Performing minimization step: 1047. Total energy = 10047.1368 kcal/mol (10026.6942 without restraints) Performing minimization step: 1048. Total energy = 10037.2837 kcal/mol (10016.8504 without restraints) Performing minimization step: 1049. Total energy = 10027.4496 kcal/mol (10007.0262 without restraints) Performing minimization step: 1050. Total energy = 10017.6342 kcal/mol (9997.2198 without restraints) Performing minimization step: 1051. Total energy = 10007.8365 kcal/mol (9987.4317 without restraints) Performing minimization step: 1052. Total energy = 9998.0573 kcal/mol (9977.6619 without restraints) Performing minimization step: 1053. Total energy = 9988.2964 kcal/mol (9967.9104 without restraints) Performing minimization step: 1054. Total energy = 9978.5542 kcal/mol (9958.1775 without restraints) Performing minimization step: 1055. Total energy = 9968.8301 kcal/mol (9948.4628 without restraints) Performing minimization step: 1056. Total energy = 9959.1243 kcal/mol (9938.7663 without restraints) Performing minimization step: 1057. Total energy = 9949.4365 kcal/mol (9929.0877 without restraints) Performing minimization step: 1058. Total energy = 9939.7668 kcal/mol (9919.4274 without restraints) Performing minimization step: 1059. Total energy = 9930.1150 kcal/mol (9909.7848 without restraints) Performing minimization step: 1060. Total energy = 9920.4811 kcal/mol (9900.1602 without restraints) Performing minimization step: 1061. Total energy = 9910.8654 kcal/mol (9890.5536 without restraints) Performing minimization step: 1062. Total energy = 9901.2672 kcal/mol (9880.9647 without restraints) Performing minimization step: 1063. Total energy = 9891.6872 kcal/mol (9871.3939 without restraints) Performing minimization step: 1064. Total energy = 9882.1246 kcal/mol (9861.8405 without restraints) Performing minimization step: 1065. Total energy = 9872.5801 kcal/mol (9852.3052 without restraints) Performing minimization step: 1066. Total energy = 9863.0535 kcal/mol (9842.7876 without restraints) Performing minimization step: 1067. Total energy = 9853.5440 kcal/mol (9833.2874 without restraints) Performing minimization step: 1068. Total energy = 9844.0527 kcal/mol (9823.8052 without restraints) Performing minimization step: 1069. Total energy = 9834.5788 kcal/mol (9814.3404 without restraints) Performing minimization step: 1070. Total energy = 9825.1222 kcal/mol (9804.8928 without restraints) Performing minimization step: 1071. Total energy = 9815.6829 kcal/mol (9795.4625 without restraints) Performing minimization step: 1072. Total energy = 9806.2613 kcal/mol (9786.0502 without restraints) Performing minimization step: 1073. Total energy = 9796.8572 kcal/mol (9776.6550 without restraints) Performing minimization step: 1074. Total energy = 9787.4703 kcal/mol (9767.2772 without restraints) Performing minimization step: 1075. Total energy = 9778.1007 kcal/mol (9757.9164 without restraints) Performing minimization step: 1076. Total energy = 9768.7481 kcal/mol (9748.5729 without restraints) Performing minimization step: 1077. Total energy = 9759.4127 kcal/mol (9739.2465 without restraints) Performing minimization step: 1078. Total energy = 9750.0948 kcal/mol (9729.9374 without restraints) Performing minimization step: 1079. Total energy = 9740.7935 kcal/mol (9720.6450 without restraints) Performing minimization step: 1080. Total energy = 9731.5095 kcal/mol (9711.3700 without restraints) Performing minimization step: 1081. Total energy = 9722.2428 kcal/mol (9702.1121 without restraints) Performing minimization step: 1082. Total energy = 9712.9930 kcal/mol (9692.8713 without restraints) Performing minimization step: 1083. Total energy = 9703.7600 kcal/mol (9683.6471 without restraints) Performing minimization step: 1084. Total energy = 9694.5438 kcal/mol (9674.4397 without restraints) Performing minimization step: 1085. Total energy = 9685.3443 kcal/mol (9665.2491 without restraints) Performing minimization step: 1086. Total energy = 9676.1618 kcal/mol (9656.0754 without restraints) Performing minimization step: 1087. Total energy = 9666.9962 kcal/mol (9646.9186 without restraints) Performing minimization step: 1088. Total energy = 9657.8471 kcal/mol (9637.7782 without restraints) Performing minimization step: 1089. Total energy = 9648.7151 kcal/mol (9628.6550 without restraints) Performing minimization step: 1090. Total energy = 9639.5992 kcal/mol (9619.5478 without restraints) Performing minimization step: 1091. Total energy = 9630.4999 kcal/mol (9610.4572 without restraints) Performing minimization step: 1092. Total energy = 9621.4173 kcal/mol (9601.3833 without restraints) Performing minimization step: 1093. Total energy = 9612.3510 kcal/mol (9592.3258 without restraints) Performing minimization step: 1094. Total energy = 9603.3015 kcal/mol (9583.2848 without restraints) Performing minimization step: 1095. Total energy = 9594.2680 kcal/mol (9574.2600 without restraints) Performing minimization step: 1096. Total energy = 9585.2508 kcal/mol (9565.2514 without restraints) Performing minimization step: 1097. Total energy = 9576.2497 kcal/mol (9556.2589 without restraints) Performing minimization step: 1098. Total energy = 9567.2652 kcal/mol (9547.2831 without restraints) Performing minimization step: 1099. Total energy = 9558.2968 kcal/mol (9538.3232 without restraints) Performing minimization step: 1100. Total energy = 9549.3443 kcal/mol (9529.3793 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 9540.4082 kcal/mol (9520.4518 without restraints) Performing minimization step: 1102. Total energy = 9531.4882 kcal/mol (9511.5404 without restraints) Performing minimization step: 1103. Total energy = 9522.5843 kcal/mol (9502.6449 without restraints) Performing minimization step: 1104. Total energy = 9513.6963 kcal/mol (9493.7654 without restraints) Performing minimization step: 1105. Total energy = 9504.8241 kcal/mol (9484.9017 without restraints) Performing minimization step: 1106. Total energy = 9495.9680 kcal/mol (9476.0542 without restraints) Performing minimization step: 1107. Total energy = 9487.1277 kcal/mol (9467.2223 without restraints) Performing minimization step: 1108. Total energy = 9478.3036 kcal/mol (9458.4067 without restraints) Performing minimization step: 1109. Total energy = 9469.4946 kcal/mol (9449.6060 without restraints) Performing minimization step: 1110. Total energy = 9460.7020 kcal/mol (9440.8219 without restraints) Performing minimization step: 1111. Total energy = 9451.9249 kcal/mol (9432.0530 without restraints) Performing minimization step: 1112. Total energy = 9443.1633 kcal/mol (9423.3000 without restraints) Performing minimization step: 1113. Total energy = 9434.4177 kcal/mol (9414.5627 without restraints) Performing minimization step: 1114. Total energy = 9425.6868 kcal/mol (9405.8401 without restraints) Performing minimization step: 1115. Total energy = 9416.9728 kcal/mol (9397.1346 without restraints) Performing minimization step: 1116. Total energy = 9408.2734 kcal/mol (9388.4434 without restraints) Performing minimization step: 1117. Total energy = 9399.5895 kcal/mol (9379.7678 without restraints) Performing minimization step: 1118. Total energy = 9390.9211 kcal/mol (9371.1077 without restraints) Performing minimization step: 1119. Total energy = 9382.2680 kcal/mol (9362.4628 without restraints) Performing minimization step: 1120. Total energy = 9373.6303 kcal/mol (9353.8333 without restraints) Performing minimization step: 1121. Total energy = 9365.0073 kcal/mol (9345.2185 without restraints) Performing minimization step: 1122. Total energy = 9356.4002 kcal/mol (9336.6197 without restraints) Performing minimization step: 1123. Total energy = 9347.8082 kcal/mol (9328.0359 without restraints) Performing minimization step: 1124. Total energy = 9339.2314 kcal/mol (9319.4675 without restraints) Performing minimization step: 1125. Total energy = 9330.6696 kcal/mol (9310.9135 without restraints) Performing minimization step: 1126. Total energy = 9322.1228 kcal/mol (9302.3750 without restraints) Performing minimization step: 1127. Total energy = 9313.5914 kcal/mol (9293.8518 without restraints) Performing minimization step: 1128. Total energy = 9305.0749 kcal/mol (9285.3434 without restraints) Performing minimization step: 1129. Total energy = 9296.5734 kcal/mol (9276.8502 without restraints) Performing minimization step: 1130. Total energy = 9288.0868 kcal/mol (9268.3716 without restraints) Performing minimization step: 1131. Total energy = 9279.6150 kcal/mol (9259.9078 without restraints) Performing minimization step: 1132. Total energy = 9271.1578 kcal/mol (9251.4587 without restraints) Performing minimization step: 1133. Total energy = 9262.7159 kcal/mol (9243.0248 without restraints) Performing minimization step: 1134. Total energy = 9254.2884 kcal/mol (9234.6053 without restraints) Performing minimization step: 1135. Total energy = 9245.8756 kcal/mol (9226.2005 without restraints) Performing minimization step: 1136. Total energy = 9237.4776 kcal/mol (9217.8105 without restraints) Performing minimization step: 1137. Total energy = 9229.0941 kcal/mol (9209.4350 without restraints) Performing minimization step: 1138. Total energy = 9220.7250 kcal/mol (9201.0739 without restraints) Performing minimization step: 1139. Total energy = 9212.3708 kcal/mol (9192.7277 without restraints) Performing minimization step: 1140. Total energy = 9204.0311 kcal/mol (9184.3959 without restraints) Performing minimization step: 1141. Total energy = 9195.7056 kcal/mol (9176.0783 without restraints) Performing minimization step: 1142. Total energy = 9187.3946 kcal/mol (9167.7752 without restraints) Performing minimization step: 1143. Total energy = 9179.0983 kcal/mol (9159.4868 without restraints) Performing minimization step: 1144. Total energy = 9170.8164 kcal/mol (9151.2129 without restraints) Performing minimization step: 1145. Total energy = 9162.5493 kcal/mol (9142.9537 without restraints) Performing minimization step: 1146. Total energy = 9154.2961 kcal/mol (9134.7083 without restraints) Performing minimization step: 1147. Total energy = 9146.0571 kcal/mol (9126.4771 without restraints) Performing minimization step: 1148. Total energy = 9137.8322 kcal/mol (9118.2603 without restraints) Performing minimization step: 1149. Total energy = 9129.6218 kcal/mol (9110.0575 without restraints) Performing minimization step: 1150. Total energy = 9121.4246 kcal/mol (9101.8681 without restraints) Performing minimization step: 1151. Total energy = 9113.2420 kcal/mol (9093.6933 without restraints) Performing minimization step: 1152. Total energy = 9105.0731 kcal/mol (9085.5322 without restraints) Performing minimization step: 1153. Total energy = 9096.9187 kcal/mol (9077.3856 without restraints) Performing minimization step: 1154. Total energy = 9088.7781 kcal/mol (9069.2527 without restraints) Performing minimization step: 1155. Total energy = 9080.6514 kcal/mol (9061.1337 without restraints) Performing minimization step: 1156. Total energy = 9072.5390 kcal/mol (9053.0291 without restraints) Performing minimization step: 1157. Total energy = 9064.4412 kcal/mol (9044.9389 without restraints) Performing minimization step: 1158. Total energy = 9056.3562 kcal/mol (9036.8616 without restraints) Performing minimization step: 1159. Total energy = 9048.2850 kcal/mol (9028.7980 without restraints) Performing minimization step: 1160. Total energy = 9040.2275 kcal/mol (9020.7482 without restraints) Performing minimization step: 1161. Total energy = 9032.1839 kcal/mol (9012.7123 without restraints) Performing minimization step: 1162. Total energy = 9024.1537 kcal/mol (9004.6897 without restraints) Performing minimization step: 1163. Total energy = 9016.1374 kcal/mol (8996.6811 without restraints) Performing minimization step: 1164. Total energy = 9008.1347 kcal/mol (8988.6859 without restraints) Performing minimization step: 1165. Total energy = 9000.1455 kcal/mol (8980.7043 without restraints) Performing minimization step: 1166. Total energy = 8992.1697 kcal/mol (8972.7361 without restraints) Performing minimization step: 1167. Total energy = 8984.2076 kcal/mol (8964.7815 without restraints) Performing minimization step: 1168. Total energy = 8976.2590 kcal/mol (8956.8405 without restraints) Performing minimization step: 1169. Total energy = 8968.3235 kcal/mol (8948.9125 without restraints) Performing minimization step: 1170. Total energy = 8960.4015 kcal/mol (8940.9981 without restraints) Performing minimization step: 1171. Total energy = 8952.4930 kcal/mol (8933.0970 without restraints) Performing minimization step: 1172. Total energy = 8944.5976 kcal/mol (8925.2092 without restraints) Performing minimization step: 1173. Total energy = 8936.7158 kcal/mol (8917.3348 without restraints) Performing minimization step: 1174. Total energy = 8928.8465 kcal/mol (8909.4732 without restraints) Performing minimization step: 1175. Total energy = 8920.9915 kcal/mol (8901.6254 without restraints) Performing minimization step: 1176. Total energy = 8913.1492 kcal/mol (8893.7907 without restraints) Performing minimization step: 1177. Total energy = 8905.3199 kcal/mol (8885.9685 without restraints) Performing minimization step: 1178. Total energy = 8897.5031 kcal/mol (8878.1592 without restraints) Performing minimization step: 1179. Total energy = 8889.6999 kcal/mol (8870.3635 without restraints) Performing minimization step: 1180. Total energy = 8881.9100 kcal/mol (8862.5810 without restraints) Performing minimization step: 1181. Total energy = 8874.1329 kcal/mol (8854.8113 without restraints) Performing minimization step: 1182. Total energy = 8866.3689 kcal/mol (8847.0546 without restraints) Performing minimization step: 1183. Total energy = 8858.6175 kcal/mol (8839.3106 without restraints) Performing minimization step: 1184. Total energy = 8850.8795 kcal/mol (8831.5798 without restraints) Performing minimization step: 1185. Total energy = 8843.1545 kcal/mol (8823.8625 without restraints) Performing minimization step: 1186. Total energy = 8835.4421 kcal/mol (8816.1572 without restraints) Performing minimization step: 1187. Total energy = 8827.7423 kcal/mol (8808.4647 without restraints) Performing minimization step: 1188. Total energy = 8820.0552 kcal/mol (8800.7848 without restraints) Performing minimization step: 1189. Total energy = 8812.3806 kcal/mol (8793.1176 without restraints) Performing minimization step: 1190. Total energy = 8804.7183 kcal/mol (8785.4625 without restraints) Performing minimization step: 1191. Total energy = 8797.0691 kcal/mol (8777.8206 without restraints) Performing minimization step: 1192. Total energy = 8789.4331 kcal/mol (8770.1918 without restraints) Performing minimization step: 1193. Total energy = 8781.8092 kcal/mol (8762.5751 without restraints) Performing minimization step: 1194. Total energy = 8774.1979 kcal/mol (8754.9710 without restraints) Performing minimization step: 1195. Total energy = 8766.5990 kcal/mol (8747.3795 without restraints) Performing minimization step: 1196. Total energy = 8759.0136 kcal/mol (8739.8010 without restraints) Performing minimization step: 1197. Total energy = 8751.4395 kcal/mol (8732.2342 without restraints) Performing minimization step: 1198. Total energy = 8743.8780 kcal/mol (8724.6797 without restraints) Performing minimization step: 1199. Total energy = 8736.3290 kcal/mol (8717.1381 without restraints) Performing minimization step: 1200. Total energy = 8728.7925 kcal/mol (8709.6085 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 8721.2680 kcal/mol (8702.0911 without restraints) Performing minimization step: 1202. Total energy = 8713.7558 kcal/mol (8694.5862 without restraints) Performing minimization step: 1203. Total energy = 8706.2558 kcal/mol (8687.0932 without restraints) Performing minimization step: 1204. Total energy = 8698.7685 kcal/mol (8679.6130 without restraints) Performing minimization step: 1205. Total energy = 8691.2930 kcal/mol (8672.1446 without restraints) Performing minimization step: 1206. Total energy = 8683.8297 kcal/mol (8664.6884 without restraints) Performing minimization step: 1207. Total energy = 8676.3782 kcal/mol (8657.2439 without restraints) Performing minimization step: 1208. Total energy = 8668.9391 kcal/mol (8649.8119 without restraints) Performing minimization step: 1209. Total energy = 8661.5120 kcal/mol (8642.3916 without restraints) Performing minimization step: 1210. Total energy = 8654.0968 kcal/mol (8634.9836 without restraints) Performing minimization step: 1211. Total energy = 8646.6937 kcal/mol (8627.5875 without restraints) Performing minimization step: 1212. Total energy = 8639.3028 kcal/mol (8620.2036 without restraints) Performing minimization step: 1213. Total energy = 8631.9241 kcal/mol (8612.8321 without restraints) Performing minimization step: 1214. Total energy = 8624.5566 kcal/mol (8605.4713 without restraints) Performing minimization step: 1215. Total energy = 8617.2005 kcal/mol (8598.1221 without restraints) Performing minimization step: 1216. Total energy = 8609.8570 kcal/mol (8590.7857 without restraints) Performing minimization step: 1217. Total energy = 8602.5255 kcal/mol (8583.4611 without restraints) Performing minimization step: 1218. Total energy = 8595.2054 kcal/mol (8576.1479 without restraints) Performing minimization step: 1219. Total energy = 8587.8968 kcal/mol (8568.8462 without restraints) Performing minimization step: 1220. Total energy = 8580.6003 kcal/mol (8561.5566 without restraints) Performing minimization step: 1221. Total energy = 8573.3152 kcal/mol (8554.2784 without restraints) Performing minimization step: 1222. Total energy = 8566.0421 kcal/mol (8547.0122 without restraints) Performing minimization step: 1223. Total energy = 8558.7806 kcal/mol (8539.7575 without restraints) Performing minimization step: 1224. Total energy = 8551.5307 kcal/mol (8532.5145 without restraints) Performing minimization step: 1225. Total energy = 8544.2921 kcal/mol (8525.2826 without restraints) Performing minimization step: 1226. Total energy = 8537.0653 kcal/mol (8518.0628 without restraints) Performing minimization step: 1227. Total energy = 8529.8502 kcal/mol (8510.8545 without restraints) Performing minimization step: 1228. Total energy = 8522.6463 kcal/mol (8503.6574 without restraints) Performing minimization step: 1229. Total energy = 8515.4537 kcal/mol (8496.4717 without restraints) Performing minimization step: 1230. Total energy = 8508.2731 kcal/mol (8489.2979 without restraints) Performing minimization step: 1231. Total energy = 8501.1033 kcal/mol (8482.1348 without restraints) Performing minimization step: 1232. Total energy = 8493.9446 kcal/mol (8474.9829 without restraints) Performing minimization step: 1233. Total energy = 8486.7976 kcal/mol (8467.8426 without restraints) Performing minimization step: 1234. Total energy = 8479.6621 kcal/mol (8460.7138 without restraints) Performing minimization step: 1235. Total energy = 8472.5377 kcal/mol (8453.5963 without restraints) Performing minimization step: 1236. Total energy = 8465.4247 kcal/mol (8446.4900 without restraints) Performing minimization step: 1237. Total energy = 8458.3228 kcal/mol (8439.3948 without restraints) Performing minimization step: 1238. Total energy = 8451.2321 kcal/mol (8432.3109 without restraints) Performing minimization step: 1239. Total energy = 8444.1526 kcal/mol (8425.2380 without restraints) Performing minimization step: 1240. Total energy = 8437.0839 kcal/mol (8418.1760 without restraints) Performing minimization step: 1241. Total energy = 8430.0260 kcal/mol (8411.1247 without restraints) Performing minimization step: 1242. Total energy = 8422.9792 kcal/mol (8404.0846 without restraints) Performing minimization step: 1243. Total energy = 8415.9436 kcal/mol (8397.0556 without restraints) Performing minimization step: 1244. Total energy = 8408.9193 kcal/mol (8390.0380 without restraints) Performing minimization step: 1245. Total energy = 8401.9056 kcal/mol (8383.0310 without restraints) Performing minimization step: 1246. Total energy = 8394.9029 kcal/mol (8376.0349 without restraints) Performing minimization step: 1247. Total energy = 8387.9114 kcal/mol (8369.0499 without restraints) Performing minimization step: 1248. Total energy = 8380.9305 kcal/mol (8362.0757 without restraints) Performing minimization step: 1249. Total energy = 8373.9604 kcal/mol (8355.1122 without restraints) Performing minimization step: 1250. Total energy = 8367.0011 kcal/mol (8348.1595 without restraints) Performing minimization step: 1251. Total energy = 8360.0529 kcal/mol (8341.2179 without restraints) Performing minimization step: 1252. Total energy = 8353.1152 kcal/mol (8334.2868 without restraints) Performing minimization step: 1253. Total energy = 8346.1885 kcal/mol (8327.3666 without restraints) Performing minimization step: 1254. Total energy = 8339.2723 kcal/mol (8320.4566 without restraints) Performing minimization step: 1255. Total energy = 8332.3665 kcal/mol (8313.5576 without restraints) Performing minimization step: 1256. Total energy = 8325.4714 kcal/mol (8306.6690 without restraints) Performing minimization step: 1257. Total energy = 8318.5871 kcal/mol (8299.7913 without restraints) Performing minimization step: 1258. Total energy = 8311.7135 kcal/mol (8292.9242 without restraints) Performing minimization step: 1259. Total energy = 8304.8506 kcal/mol (8286.0678 without restraints) Performing minimization step: 1260. Total energy = 8297.9978 kcal/mol (8279.2215 without restraints) Performing minimization step: 1261. Total energy = 8291.1559 kcal/mol (8272.3861 without restraints) Performing minimization step: 1262. Total energy = 8284.3244 kcal/mol (8265.5610 without restraints) Performing minimization step: 1263. Total energy = 8277.5036 kcal/mol (8258.7467 without restraints) Performing minimization step: 1264. Total energy = 8270.6930 kcal/mol (8251.9425 without restraints) Performing minimization step: 1265. Total energy = 8263.8927 kcal/mol (8245.1487 without restraints) Performing minimization step: 1266. Total energy = 8257.1027 kcal/mol (8238.3650 without restraints) Performing minimization step: 1267. Total energy = 8250.3231 kcal/mol (8231.5919 without restraints) Performing minimization step: 1268. Total energy = 8243.5539 kcal/mol (8224.8291 without restraints) Performing minimization step: 1269. Total energy = 8236.7951 kcal/mol (8218.0767 without restraints) Performing minimization step: 1270. Total energy = 8230.0467 kcal/mol (8211.3347 without restraints) Performing minimization step: 1271. Total energy = 8223.3084 kcal/mol (8204.6028 without restraints) Performing minimization step: 1272. Total energy = 8216.5805 kcal/mol (8197.8815 without restraints) Performing minimization step: 1273. Total energy = 8209.8629 kcal/mol (8191.1700 without restraints) Performing minimization step: 1274. Total energy = 8203.1552 kcal/mol (8184.4687 without restraints) Performing minimization step: 1275. Total energy = 8196.4575 kcal/mol (8177.7774 without restraints) Performing minimization step: 1276. Total energy = 8189.7702 kcal/mol (8171.0964 without restraints) Performing minimization step: 1277. Total energy = 8183.0929 kcal/mol (8164.4254 without restraints) Performing minimization step: 1278. Total energy = 8176.4254 kcal/mol (8157.7642 without restraints) Performing minimization step: 1279. Total energy = 8169.7683 kcal/mol (8151.1135 without restraints) Performing minimization step: 1280. Total energy = 8163.1206 kcal/mol (8144.4721 without restraints) Performing minimization step: 1281. Total energy = 8156.4832 kcal/mol (8137.8409 without restraints) Performing minimization step: 1282. Total energy = 8149.8560 kcal/mol (8131.2200 without restraints) Performing minimization step: 1283. Total energy = 8143.2386 kcal/mol (8124.6089 without restraints) Performing minimization step: 1284. Total energy = 8136.6312 kcal/mol (8118.0079 without restraints) Performing minimization step: 1285. Total energy = 8130.0339 kcal/mol (8111.4168 without restraints) Performing minimization step: 1286. Total energy = 8123.4463 kcal/mol (8104.8353 without restraints) Performing minimization step: 1287. Total energy = 8116.8686 kcal/mol (8098.2640 without restraints) Performing minimization step: 1288. Total energy = 8110.3008 kcal/mol (8091.7023 without restraints) Performing minimization step: 1289. Total energy = 8103.7425 kcal/mol (8085.1504 without restraints) Performing minimization step: 1290. Total energy = 8097.1943 kcal/mol (8078.6083 without restraints) Performing minimization step: 1291. Total energy = 8090.6556 kcal/mol (8072.0758 without restraints) Performing minimization step: 1292. Total energy = 8084.1263 kcal/mol (8065.5526 without restraints) Performing minimization step: 1293. Total energy = 8077.6068 kcal/mol (8059.0395 without restraints) Performing minimization step: 1294. Total energy = 8071.0969 kcal/mol (8052.5357 without restraints) Performing minimization step: 1295. Total energy = 8064.5971 kcal/mol (8046.0421 without restraints) Performing minimization step: 1296. Total energy = 8058.1068 kcal/mol (8039.5580 without restraints) Performing minimization step: 1297. Total energy = 8051.6260 kcal/mol (8033.0833 without restraints) Performing minimization step: 1298. Total energy = 8045.1552 kcal/mol (8026.6188 without restraints) Performing minimization step: 1299. Total energy = 8038.6937 kcal/mol (8020.1634 without restraints) Performing minimization step: 1300. Total energy = 8032.2417 kcal/mol (8013.7175 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 8025.7992 kcal/mol (8007.2811 without restraints) Performing minimization step: 1302. Total energy = 8019.3661 kcal/mol (8000.8540 without restraints) Performing minimization step: 1303. Total energy = 8012.9426 kcal/mol (7994.4368 without restraints) Performing minimization step: 1304. Total energy = 8006.5284 kcal/mol (7988.0287 without restraints) Performing minimization step: 1305. Total energy = 8000.1236 kcal/mol (7981.6300 without restraints) Performing minimization step: 1306. Total energy = 7993.7278 kcal/mol (7975.2403 without restraints) Performing minimization step: 1307. Total energy = 7987.3418 kcal/mol (7968.8604 without restraints) Performing minimization step: 1308. Total energy = 7980.9651 kcal/mol (7962.4898 without restraints) Performing minimization step: 1309. Total energy = 7974.5981 kcal/mol (7956.1288 without restraints) Performing minimization step: 1310. Total energy = 7968.2404 kcal/mol (7949.7773 without restraints) Performing minimization step: 1311. Total energy = 7961.8917 kcal/mol (7943.4346 without restraints) Performing minimization step: 1312. Total energy = 7955.5520 kcal/mol (7937.1009 without restraints) Performing minimization step: 1313. Total energy = 7949.2218 kcal/mol (7930.7769 without restraints) Performing minimization step: 1314. Total energy = 7942.9011 kcal/mol (7924.4621 without restraints) Performing minimization step: 1315. Total energy = 7936.5890 kcal/mol (7918.1560 without restraints) Performing minimization step: 1316. Total energy = 7930.2863 kcal/mol (7911.8593 without restraints) Performing minimization step: 1317. Total energy = 7923.9929 kcal/mol (7905.5719 without restraints) Performing minimization step: 1318. Total energy = 7917.7084 kcal/mol (7899.2934 without restraints) Performing minimization step: 1319. Total energy = 7911.4330 kcal/mol (7893.0240 without restraints) Performing minimization step: 1320. Total energy = 7905.1667 kcal/mol (7886.7637 without restraints) Performing minimization step: 1321. Total energy = 7898.9096 kcal/mol (7880.5126 without restraints) Performing minimization step: 1322. Total energy = 7892.6614 kcal/mol (7874.2704 without restraints) Performing minimization step: 1323. Total energy = 7886.4226 kcal/mol (7868.0376 without restraints) Performing minimization step: 1324. Total energy = 7880.1926 kcal/mol (7861.8135 without restraints) Performing minimization step: 1325. Total energy = 7873.9714 kcal/mol (7855.5983 without restraints) Performing minimization step: 1326. Total energy = 7867.7592 kcal/mol (7849.3921 without restraints) Performing minimization step: 1327. Total energy = 7861.5559 kcal/mol (7843.1947 without restraints) Performing minimization step: 1328. Total energy = 7855.3615 kcal/mol (7837.0062 without restraints) Performing minimization step: 1329. Total energy = 7849.1759 kcal/mol (7830.8265 without restraints) Performing minimization step: 1330. Total energy = 7842.9995 kcal/mol (7824.6561 without restraints) Performing minimization step: 1331. Total energy = 7836.8319 kcal/mol (7818.4943 without restraints) Performing minimization step: 1332. Total energy = 7830.6729 kcal/mol (7812.3413 without restraints) Performing minimization step: 1333. Total energy = 7824.5227 kcal/mol (7806.1970 without restraints) Performing minimization step: 1334. Total energy = 7818.3810 kcal/mol (7800.0612 without restraints) Performing minimization step: 1335. Total energy = 7812.2482 kcal/mol (7793.9343 without restraints) Performing minimization step: 1336. Total energy = 7806.1247 kcal/mol (7787.8166 without restraints) Performing minimization step: 1337. Total energy = 7800.0093 kcal/mol (7781.7071 without restraints) Performing minimization step: 1338. Total energy = 7793.9030 kcal/mol (7775.6067 without restraints) Performing minimization step: 1339. Total energy = 7787.8052 kcal/mol (7769.5148 without restraints) Performing minimization step: 1340. Total energy = 7781.7162 kcal/mol (7763.4316 without restraints) Performing minimization step: 1341. Total energy = 7775.6357 kcal/mol (7757.3568 without restraints) Performing minimization step: 1342. Total energy = 7769.5633 kcal/mol (7751.2904 without restraints) Performing minimization step: 1343. Total energy = 7763.4998 kcal/mol (7745.2327 without restraints) Performing minimization step: 1344. Total energy = 7757.4447 kcal/mol (7739.1836 without restraints) Performing minimization step: 1345. Total energy = 7751.3982 kcal/mol (7733.1428 without restraints) Performing minimization step: 1346. Total energy = 7745.3602 kcal/mol (7727.1106 without restraints) Performing minimization step: 1347. Total energy = 7739.3305 kcal/mol (7721.0867 without restraints) Performing minimization step: 1348. Total energy = 7733.3096 kcal/mol (7715.0715 without restraints) Performing minimization step: 1349. Total energy = 7727.2972 kcal/mol (7709.0652 without restraints) Performing minimization step: 1350. Total energy = 7721.2937 kcal/mol (7703.0673 without restraints) Performing minimization step: 1351. Total energy = 7715.2982 kcal/mol (7697.0776 without restraints) Performing minimization step: 1352. Total energy = 7709.3113 kcal/mol (7691.0965 without restraints) Performing minimization step: 1353. Total energy = 7703.3330 kcal/mol (7685.1240 without restraints) Performing minimization step: 1354. Total energy = 7697.3625 kcal/mol (7679.1592 without restraints) Performing minimization step: 1355. Total energy = 7691.4003 kcal/mol (7673.2028 without restraints) Performing minimization step: 1356. Total energy = 7685.4468 kcal/mol (7667.2550 without restraints) Performing minimization step: 1357. Total energy = 7679.5017 kcal/mol (7661.3157 without restraints) Performing minimization step: 1358. Total energy = 7673.5651 kcal/mol (7655.3848 without restraints) Performing minimization step: 1359. Total energy = 7667.6365 kcal/mol (7649.4620 without restraints) Performing minimization step: 1360. Total energy = 7661.7160 kcal/mol (7643.5472 without restraints) Performing minimization step: 1361. Total energy = 7655.8036 kcal/mol (7637.6406 without restraints) Performing minimization step: 1362. Total energy = 7649.8999 kcal/mol (7631.7426 without restraints) Performing minimization step: 1363. Total energy = 7644.0040 kcal/mol (7625.8524 without restraints) Performing minimization step: 1364. Total energy = 7638.1164 kcal/mol (7619.9705 without restraints) Performing minimization step: 1365. Total energy = 7632.2370 kcal/mol (7614.0967 without restraints) Performing minimization step: 1366. Total energy = 7626.3651 kcal/mol (7608.2306 without restraints) Performing minimization step: 1367. Total energy = 7620.5022 kcal/mol (7602.3734 without restraints) Performing minimization step: 1368. Total energy = 7614.6472 kcal/mol (7596.5242 without restraints) Performing minimization step: 1369. Total energy = 7608.8003 kcal/mol (7590.6829 without restraints) Performing minimization step: 1370. Total energy = 7602.9613 kcal/mol (7584.8496 without restraints) Performing minimization step: 1371. Total energy = 7597.1302 kcal/mol (7579.0241 without restraints) Performing minimization step: 1372. Total energy = 7591.3073 kcal/mol (7573.2069 without restraints) Performing minimization step: 1373. Total energy = 7585.4924 kcal/mol (7567.3977 without restraints) Performing minimization step: 1374. Total energy = 7579.6857 kcal/mol (7561.5967 without restraints) Performing minimization step: 1375. Total energy = 7573.8874 kcal/mol (7555.8040 without restraints) Performing minimization step: 1376. Total energy = 7568.0966 kcal/mol (7550.0186 without restraints) Performing minimization step: 1377. Total energy = 7562.3135 kcal/mol (7544.2415 without restraints) Performing minimization step: 1378. Total energy = 7556.5387 kcal/mol (7538.4722 without restraints) Performing minimization step: 1379. Total energy = 7550.7717 kcal/mol (7532.7108 without restraints) Performing minimization step: 1380. Total energy = 7545.0131 kcal/mol (7526.9578 without restraints) Performing minimization step: 1381. Total energy = 7539.2617 kcal/mol (7521.2120 without restraints) Performing minimization step: 1382. Total energy = 7533.5182 kcal/mol (7515.4741 without restraints) Performing minimization step: 1383. Total energy = 7527.7825 kcal/mol (7509.7441 without restraints) Performing minimization step: 1384. Total energy = 7522.0547 kcal/mol (7504.0219 without restraints) Performing minimization step: 1385. Total energy = 7516.3350 kcal/mol (7498.3078 without restraints) Performing minimization step: 1386. Total energy = 7510.6228 kcal/mol (7492.6012 without restraints) Performing minimization step: 1387. Total energy = 7504.9184 kcal/mol (7486.9023 without restraints) Performing minimization step: 1388. Total energy = 7499.2219 kcal/mol (7481.2114 without restraints) Performing minimization step: 1389. Total energy = 7493.5329 kcal/mol (7475.5280 without restraints) Performing minimization step: 1390. Total energy = 7487.8517 kcal/mol (7469.8524 without restraints) Performing minimization step: 1391. Total energy = 7482.1784 kcal/mol (7464.1848 without restraints) Performing minimization step: 1392. Total energy = 7476.5123 kcal/mol (7458.5241 without restraints) Performing minimization step: 1393. Total energy = 7470.8540 kcal/mol (7452.8714 without restraints) Performing minimization step: 1394. Total energy = 7465.2038 kcal/mol (7447.2267 without restraints) Performing minimization step: 1395. Total energy = 7459.5609 kcal/mol (7441.5894 without restraints) Performing minimization step: 1396. Total energy = 7453.9253 kcal/mol (7435.9594 without restraints) Performing minimization step: 1397. Total energy = 7448.2976 kcal/mol (7430.3372 without restraints) Performing minimization step: 1398. Total energy = 7442.6777 kcal/mol (7424.7228 without restraints) Performing minimization step: 1399. Total energy = 7437.0652 kcal/mol (7419.1158 without restraints) Performing minimization step: 1400. Total energy = 7431.4603 kcal/mol (7413.5167 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 7425.8630 kcal/mol (7407.9247 without restraints) Performing minimization step: 1402. Total energy = 7420.2732 kcal/mol (7402.3404 without restraints) Performing minimization step: 1403. Total energy = 7414.6907 kcal/mol (7396.7634 without restraints) Performing minimization step: 1404. Total energy = 7409.1157 kcal/mol (7391.1940 without restraints) Performing minimization step: 1405. Total energy = 7403.5482 kcal/mol (7385.6319 without restraints) Performing minimization step: 1406. Total energy = 7397.9881 kcal/mol (7380.0773 without restraints) Performing minimization step: 1407. Total energy = 7392.4359 kcal/mol (7374.5307 without restraints) Performing minimization step: 1408. Total energy = 7386.8906 kcal/mol (7368.9908 without restraints) Performing minimization step: 1409. Total energy = 7381.3528 kcal/mol (7363.4584 without restraints) Performing minimization step: 1410. Total energy = 7375.8223 kcal/mol (7357.9335 without restraints) Performing minimization step: 1411. Total energy = 7370.2997 kcal/mol (7352.4163 without restraints) Performing minimization step: 1412. Total energy = 7364.7837 kcal/mol (7346.9059 without restraints) Performing minimization step: 1413. Total energy = 7359.2751 kcal/mol (7341.4028 without restraints) Performing minimization step: 1414. Total energy = 7353.7746 kcal/mol (7335.9076 without restraints) Performing minimization step: 1415. Total energy = 7348.2807 kcal/mol (7330.4193 without restraints) Performing minimization step: 1416. Total energy = 7342.7943 kcal/mol (7324.9383 without restraints) Performing minimization step: 1417. Total energy = 7337.3153 kcal/mol (7319.4648 without restraints) Performing minimization step: 1418. Total energy = 7331.8432 kcal/mol (7313.9981 without restraints) Performing minimization step: 1419. Total energy = 7326.3791 kcal/mol (7308.5394 without restraints) Performing minimization step: 1420. Total energy = 7320.9216 kcal/mol (7303.0874 without restraints) Performing minimization step: 1421. Total energy = 7315.4710 kcal/mol (7297.6422 without restraints) Performing minimization step: 1422. Total energy = 7310.0280 kcal/mol (7292.2045 without restraints) Performing minimization step: 1423. Total energy = 7304.5923 kcal/mol (7286.7743 without restraints) Performing minimization step: 1424. Total energy = 7299.1643 kcal/mol (7281.3518 without restraints) Performing minimization step: 1425. Total energy = 7293.7430 kcal/mol (7275.9359 without restraints) Performing minimization step: 1426. Total energy = 7288.3281 kcal/mol (7270.5264 without restraints) Performing minimization step: 1427. Total energy = 7282.9209 kcal/mol (7265.1246 without restraints) Performing minimization step: 1428. Total energy = 7277.5209 kcal/mol (7259.7300 without restraints) Performing minimization step: 1429. Total energy = 7272.1281 kcal/mol (7254.3426 without restraints) Performing minimization step: 1430. Total energy = 7266.7421 kcal/mol (7248.9623 without restraints) Performing minimization step: 1431. Total energy = 7261.3635 kcal/mol (7243.5888 without restraints) Performing minimization step: 1432. Total energy = 7255.9918 kcal/mol (7238.2227 without restraints) Performing minimization step: 1433. Total energy = 7250.6272 kcal/mol (7232.8633 without restraints) Performing minimization step: 1434. Total energy = 7245.2693 kcal/mol (7227.5109 without restraints) Performing minimization step: 1435. Total energy = 7239.9184 kcal/mol (7222.1653 without restraints) Performing minimization step: 1436. Total energy = 7234.5748 kcal/mol (7216.8271 without restraints) Performing minimization step: 1437. Total energy = 7229.2379 kcal/mol (7211.4956 without restraints) Performing minimization step: 1438. Total energy = 7223.9085 kcal/mol (7206.1715 without restraints) Performing minimization step: 1439. Total energy = 7218.5854 kcal/mol (7200.8538 without restraints) Performing minimization step: 1440. Total energy = 7213.2695 kcal/mol (7195.5432 without restraints) Performing minimization step: 1441. Total energy = 7207.9609 kcal/mol (7190.2400 without restraints) Performing minimization step: 1442. Total energy = 7202.6591 kcal/mol (7184.9435 without restraints) Performing minimization step: 1443. Total energy = 7197.3639 kcal/mol (7179.6536 without restraints) Performing minimization step: 1444. Total energy = 7192.0753 kcal/mol (7174.3706 without restraints) Performing minimization step: 1445. Total energy = 7186.7942 kcal/mol (7169.0946 without restraints) Performing minimization step: 1446. Total energy = 7181.5196 kcal/mol (7163.8254 without restraints) Performing minimization step: 1447. Total energy = 7176.2521 kcal/mol (7158.5632 without restraints) Performing minimization step: 1448. Total energy = 7170.9916 kcal/mol (7153.3080 without restraints) Performing minimization step: 1449. Total energy = 7165.7375 kcal/mol (7148.0593 without restraints) Performing minimization step: 1450. Total energy = 7160.4903 kcal/mol (7142.8173 without restraints) Performing minimization step: 1451. Total energy = 7155.2495 kcal/mol (7137.5819 without restraints) Performing minimization step: 1452. Total energy = 7150.0161 kcal/mol (7132.3539 without restraints) Performing minimization step: 1453. Total energy = 7144.7891 kcal/mol (7127.1322 without restraints) Performing minimization step: 1454. Total energy = 7139.5689 kcal/mol (7121.9172 without restraints) Performing minimization step: 1455. Total energy = 7134.3551 kcal/mol (7116.7088 without restraints) Performing minimization step: 1456. Total energy = 7129.1482 kcal/mol (7111.5073 without restraints) Performing minimization step: 1457. Total energy = 7123.9487 kcal/mol (7106.3129 without restraints) Performing minimization step: 1458. Total energy = 7118.7549 kcal/mol (7101.1245 without restraints) Performing minimization step: 1459. Total energy = 7113.5683 kcal/mol (7095.9433 without restraints) Performing minimization step: 1460. Total energy = 7108.3884 kcal/mol (7090.7687 without restraints) Performing minimization step: 1461. Total energy = 7103.2153 kcal/mol (7085.6008 without restraints) Performing minimization step: 1462. Total energy = 7098.0485 kcal/mol (7080.4392 without restraints) Performing minimization step: 1463. Total energy = 7092.8883 kcal/mol (7075.2843 without restraints) Performing minimization step: 1464. Total energy = 7087.7348 kcal/mol (7070.1361 without restraints) Performing minimization step: 1465. Total energy = 7082.5880 kcal/mol (7064.9945 without restraints) Performing minimization step: 1466. Total energy = 7077.4478 kcal/mol (7059.8598 without restraints) Performing minimization step: 1467. Total energy = 7072.3138 kcal/mol (7054.7309 without restraints) Performing minimization step: 1468. Total energy = 7067.1865 kcal/mol (7049.6089 without restraints) Performing minimization step: 1469. Total energy = 7062.0658 kcal/mol (7044.4934 without restraints) Performing minimization step: 1470. Total energy = 7056.9516 kcal/mol (7039.3845 without restraints) Performing minimization step: 1471. Total energy = 7051.8440 kcal/mol (7034.2821 without restraints) Performing minimization step: 1472. Total energy = 7046.7430 kcal/mol (7029.1863 without restraints) Performing minimization step: 1473. Total energy = 7041.6483 kcal/mol (7024.0969 without restraints) Performing minimization step: 1474. Total energy = 7036.5601 kcal/mol (7019.0140 without restraints) Performing minimization step: 1475. Total energy = 7031.4784 kcal/mol (7013.9374 without restraints) Performing minimization step: 1476. Total energy = 7026.4028 kcal/mol (7008.8673 without restraints) Performing minimization step: 1477. Total energy = 7021.3340 kcal/mol (7003.8035 without restraints) Performing minimization step: 1478. Total energy = 7016.2720 kcal/mol (6998.7468 without restraints) Performing minimization step: 1479. Total energy = 7011.2162 kcal/mol (6993.6962 without restraints) Performing minimization step: 1480. Total energy = 7006.1670 kcal/mol (6988.6522 without restraints) Performing minimization step: 1481. Total energy = 7001.1239 kcal/mol (6983.6145 without restraints) Performing minimization step: 1482. Total energy = 6996.0873 kcal/mol (6978.5831 without restraints) Performing minimization step: 1483. Total energy = 6991.0575 kcal/mol (6973.5585 without restraints) Performing minimization step: 1484. Total energy = 6986.0337 kcal/mol (6968.5398 without restraints) Performing minimization step: 1485. Total energy = 6981.0160 kcal/mol (6963.5273 without restraints) Performing minimization step: 1486. Total energy = 6976.0044 kcal/mol (6958.5209 without restraints) Performing minimization step: 1487. Total energy = 6970.9994 kcal/mol (6953.5211 without restraints) Performing minimization step: 1488. Total energy = 6966.0009 kcal/mol (6948.5278 without restraints) Performing minimization step: 1489. Total energy = 6961.0083 kcal/mol (6943.5404 without restraints) Performing minimization step: 1490. Total energy = 6956.0221 kcal/mol (6938.5594 without restraints) Performing minimization step: 1491. Total energy = 6951.0423 kcal/mol (6933.5848 without restraints) Performing minimization step: 1492. Total energy = 6946.0683 kcal/mol (6928.6159 without restraints) Performing minimization step: 1493. Total energy = 6941.1009 kcal/mol (6923.6539 without restraints) Performing minimization step: 1494. Total energy = 6936.1397 kcal/mol (6918.6976 without restraints) Performing minimization step: 1495. Total energy = 6931.1849 kcal/mol (6913.7482 without restraints) Performing minimization step: 1496. Total energy = 6926.2360 kcal/mol (6908.8045 without restraints) Performing minimization step: 1497. Total energy = 6921.2937 kcal/mol (6903.8673 without restraints) Performing minimization step: 1498. Total energy = 6916.3576 kcal/mol (6898.9365 without restraints) Performing minimization step: 1499. Total energy = 6911.4276 kcal/mol (6894.0116 without restraints) Performing minimization step: 1500. Total energy = 6906.5037 kcal/mol (6889.0928 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 6901.5859 kcal/mol (6884.1802 without restraints) Performing minimization step: 1502. Total energy = 6896.6740 kcal/mol (6879.2735 without restraints) Performing minimization step: 1503. Total energy = 6891.7690 kcal/mol (6874.3736 without restraints) Performing minimization step: 1504. Total energy = 6886.8695 kcal/mol (6869.4793 without restraints) Performing minimization step: 1505. Total energy = 6881.9762 kcal/mol (6864.5912 without restraints) Performing minimization step: 1506. Total energy = 6877.0890 kcal/mol (6859.7090 without restraints) Performing minimization step: 1507. Total energy = 6872.2078 kcal/mol (6854.8331 without restraints) Performing minimization step: 1508. Total energy = 6867.3333 kcal/mol (6849.9637 without restraints) Performing minimization step: 1509. Total energy = 6862.4644 kcal/mol (6845.0999 without restraints) Performing minimization step: 1510. Total energy = 6857.6014 kcal/mol (6840.2422 without restraints) Performing minimization step: 1511. Total energy = 6852.7450 kcal/mol (6835.3909 without restraints) Performing minimization step: 1512. Total energy = 6847.8942 kcal/mol (6830.5452 without restraints) Performing minimization step: 1513. Total energy = 6843.0491 kcal/mol (6825.7052 without restraints) Performing minimization step: 1514. Total energy = 6838.2102 kcal/mol (6820.8715 without restraints) Performing minimization step: 1515. Total energy = 6833.3776 kcal/mol (6816.0439 without restraints) Performing minimization step: 1516. Total energy = 6828.5509 kcal/mol (6811.2224 without restraints) Performing minimization step: 1517. Total energy = 6823.7297 kcal/mol (6806.4063 without restraints) Performing minimization step: 1518. Total energy = 6818.9147 kcal/mol (6801.5965 without restraints) Performing minimization step: 1519. Total energy = 6814.1060 kcal/mol (6796.7928 without restraints) Performing minimization step: 1520. Total energy = 6809.3034 kcal/mol (6791.9955 without restraints) Performing minimization step: 1521. Total energy = 6804.5064 kcal/mol (6787.2035 without restraints) Performing minimization step: 1522. Total energy = 6799.7153 kcal/mol (6782.4176 without restraints) Performing minimization step: 1523. Total energy = 6794.9304 kcal/mol (6777.6377 without restraints) Performing minimization step: 1524. Total energy = 6790.1510 kcal/mol (6772.8634 without restraints) Performing minimization step: 1525. Total energy = 6785.3774 kcal/mol (6768.0949 without restraints) Performing minimization step: 1526. Total energy = 6780.6099 kcal/mol (6763.3325 without restraints) Performing minimization step: 1527. Total energy = 6775.8482 kcal/mol (6758.5759 without restraints) Performing minimization step: 1528. Total energy = 6771.0923 kcal/mol (6753.8252 without restraints) Performing minimization step: 1529. Total energy = 6766.3425 kcal/mol (6749.0804 without restraints) Performing minimization step: 1530. Total energy = 6761.5987 kcal/mol (6744.3417 without restraints) Performing minimization step: 1531. Total energy = 6756.8603 kcal/mol (6739.6084 without restraints) Performing minimization step: 1532. Total energy = 6752.1282 kcal/mol (6734.8814 without restraints) Performing minimization step: 1533. Total energy = 6747.4018 kcal/mol (6730.1601 without restraints) Performing minimization step: 1534. Total energy = 6742.6809 kcal/mol (6725.4443 without restraints) Performing minimization step: 1535. Total energy = 6737.9658 kcal/mol (6720.7343 without restraints) Performing minimization step: 1536. Total energy = 6733.2565 kcal/mol (6716.0300 without restraints) Performing minimization step: 1537. Total energy = 6728.5529 kcal/mol (6711.3316 without restraints) Performing minimization step: 1538. Total energy = 6723.8549 kcal/mol (6706.6386 without restraints) Performing minimization step: 1539. Total energy = 6719.1628 kcal/mol (6701.9516 without restraints) Performing minimization step: 1540. Total energy = 6714.4765 kcal/mol (6697.2704 without restraints) Performing minimization step: 1541. Total energy = 6709.7959 kcal/mol (6692.5948 without restraints) Performing minimization step: 1542. Total energy = 6705.1212 kcal/mol (6687.9253 without restraints) Performing minimization step: 1543. Total energy = 6700.4518 kcal/mol (6683.2606 without restraints) Performing minimization step: 1544. Total energy = 6695.7882 kcal/mol (6678.6023 without restraints) Performing minimization step: 1545. Total energy = 6691.1305 kcal/mol (6673.9496 without restraints) Performing minimization step: 1546. Total energy = 6686.4779 kcal/mol (6669.3019 without restraints) Performing minimization step: 1547. Total energy = 6681.8314 kcal/mol (6664.6607 without restraints) Performing minimization step: 1548. Total energy = 6677.1902 kcal/mol (6660.0245 without restraints) Performing minimization step: 1549. Total energy = 6672.5549 kcal/mol (6655.3943 without restraints) Performing minimization step: 1550. Total energy = 6667.9255 kcal/mol (6650.7699 without restraints) Performing minimization step: 1551. Total energy = 6663.3013 kcal/mol (6646.1506 without restraints) Performing minimization step: 1552. Total energy = 6658.6830 kcal/mol (6641.5375 without restraints) Performing minimization step: 1553. Total energy = 6654.0701 kcal/mol (6636.9295 without restraints) Performing minimization step: 1554. Total energy = 6649.4627 kcal/mol (6632.3273 without restraints) Performing minimization step: 1555. Total energy = 6644.8613 kcal/mol (6627.7309 without restraints) Performing minimization step: 1556. Total energy = 6640.2657 kcal/mol (6623.1403 without restraints) Performing minimization step: 1557. Total energy = 6635.6754 kcal/mol (6618.5551 without restraints) Performing minimization step: 1558. Total energy = 6631.0905 kcal/mol (6613.9752 without restraints) Performing minimization step: 1559. Total energy = 6626.5122 kcal/mol (6609.4023 without restraints) Performing minimization step: 1560. Total energy = 6621.9387 kcal/mol (6604.8335 without restraints) Performing minimization step: 1561. Total energy = 6617.3703 kcal/mol (6600.2701 without restraints) Performing minimization step: 1562. Total energy = 6612.8076 kcal/mol (6595.7124 without restraints) Performing minimization step: 1563. Total energy = 6608.2500 kcal/mol (6591.1599 without restraints) Performing minimization step: 1564. Total energy = 6603.6986 kcal/mol (6586.6135 without restraints) Performing minimization step: 1565. Total energy = 6599.1525 kcal/mol (6582.0724 without restraints) Performing minimization step: 1566. Total energy = 6594.6117 kcal/mol (6577.5366 without restraints) Performing minimization step: 1567. Total energy = 6590.0763 kcal/mol (6573.0062 without restraints) Performing minimization step: 1568. Total energy = 6585.5467 kcal/mol (6568.4819 without restraints) Performing minimization step: 1569. Total energy = 6581.0226 kcal/mol (6563.9624 without restraints) Performing minimization step: 1570. Total energy = 6576.5035 kcal/mol (6559.4484 without restraints) Performing minimization step: 1571. Total energy = 6571.9903 kcal/mol (6554.9403 without restraints) Performing minimization step: 1572. Total energy = 6567.4829 kcal/mol (6550.4378 without restraints) Performing minimization step: 1573. Total energy = 6562.9804 kcal/mol (6545.9404 without restraints) Performing minimization step: 1574. Total energy = 6558.4831 kcal/mol (6541.4480 without restraints) Performing minimization step: 1575. Total energy = 6553.9910 kcal/mol (6536.9609 without restraints) Performing minimization step: 1576. Total energy = 6549.5044 kcal/mol (6532.4793 without restraints) Performing minimization step: 1577. Total energy = 6545.0234 kcal/mol (6528.0034 without restraints) Performing minimization step: 1578. Total energy = 6540.5477 kcal/mol (6523.5326 without restraints) Performing minimization step: 1579. Total energy = 6536.0778 kcal/mol (6519.0677 without restraints) Performing minimization step: 1580. Total energy = 6531.6131 kcal/mol (6514.6080 without restraints) Performing minimization step: 1581. Total energy = 6527.1532 kcal/mol (6510.1531 without restraints) Performing minimization step: 1582. Total energy = 6522.6985 kcal/mol (6505.7034 without restraints) Performing minimization step: 1583. Total energy = 6518.2494 kcal/mol (6501.2592 without restraints) Performing minimization step: 1584. Total energy = 6513.8054 kcal/mol (6496.8203 without restraints) Performing minimization step: 1585. Total energy = 6509.3670 kcal/mol (6492.3868 without restraints) Performing minimization step: 1586. Total energy = 6504.9337 kcal/mol (6487.9585 without restraints) Performing minimization step: 1587. Total energy = 6500.5061 kcal/mol (6483.5359 without restraints) Performing minimization step: 1588. Total energy = 6496.0836 kcal/mol (6479.1184 without restraints) Performing minimization step: 1589. Total energy = 6491.6663 kcal/mol (6474.7060 without restraints) Performing minimization step: 1590. Total energy = 6487.2545 kcal/mol (6470.2992 without restraints) Performing minimization step: 1591. Total energy = 6482.8477 kcal/mol (6465.8974 without restraints) Performing minimization step: 1592. Total energy = 6478.4463 kcal/mol (6461.5009 without restraints) Performing minimization step: 1593. Total energy = 6474.0500 kcal/mol (6457.1096 without restraints) Performing minimization step: 1594. Total energy = 6469.6594 kcal/mol (6452.7240 without restraints) Performing minimization step: 1595. Total energy = 6465.2737 kcal/mol (6448.3432 without restraints) Performing minimization step: 1596. Total energy = 6460.8928 kcal/mol (6443.9673 without restraints) Performing minimization step: 1597. Total energy = 6456.5174 kcal/mol (6439.5969 without restraints) Performing minimization step: 1598. Total energy = 6452.1471 kcal/mol (6435.2315 without restraints) Performing minimization step: 1599. Total energy = 6447.7820 kcal/mol (6430.8713 without restraints) Performing minimization step: 1600. Total energy = 6443.4219 kcal/mol (6426.5162 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 6439.0672 kcal/mol (6422.1663 without restraints) Performing minimization step: 1602. Total energy = 6434.7176 kcal/mol (6417.8218 without restraints) Performing minimization step: 1603. Total energy = 6430.3738 kcal/mol (6413.4830 without restraints) Performing minimization step: 1604. Total energy = 6426.0342 kcal/mol (6409.1483 without restraints) Performing minimization step: 1605. Total energy = 6421.7001 kcal/mol (6404.8191 without restraints) Performing minimization step: 1606. Total energy = 6417.3711 kcal/mol (6400.4951 without restraints) Performing minimization step: 1607. Total energy = 6413.0478 kcal/mol (6396.1768 without restraints) Performing minimization step: 1608. Total energy = 6408.7293 kcal/mol (6391.8632 without restraints) Performing minimization step: 1609. Total energy = 6404.4159 kcal/mol (6387.5547 without restraints) Performing minimization step: 1610. Total energy = 6400.1073 kcal/mol (6383.2510 without restraints) Performing minimization step: 1611. Total energy = 6395.8038 kcal/mol (6378.9525 without restraints) Performing minimization step: 1612. Total energy = 6391.5053 kcal/mol (6374.6589 without restraints) Performing minimization step: 1613. Total energy = 6387.2120 kcal/mol (6370.3706 without restraints) Performing minimization step: 1614. Total energy = 6382.9240 kcal/mol (6366.0875 without restraints) Performing minimization step: 1615. Total energy = 6378.6411 kcal/mol (6361.8095 without restraints) Performing minimization step: 1616. Total energy = 6374.3629 kcal/mol (6357.5363 without restraints) Performing minimization step: 1617. Total energy = 6370.0899 kcal/mol (6353.2681 without restraints) Performing minimization step: 1618. Total energy = 6365.8218 kcal/mol (6349.0050 without restraints) Performing minimization step: 1619. Total energy = 6361.5586 kcal/mol (6344.7467 without restraints) Performing minimization step: 1620. Total energy = 6357.3007 kcal/mol (6340.4937 without restraints) Performing minimization step: 1621. Total energy = 6353.0481 kcal/mol (6336.2460 without restraints) Performing minimization step: 1622. Total energy = 6348.8001 kcal/mol (6332.0030 without restraints) Performing minimization step: 1623. Total energy = 6344.5573 kcal/mol (6327.7651 without restraints) Performing minimization step: 1624. Total energy = 6340.3194 kcal/mol (6323.5321 without restraints) Performing minimization step: 1625. Total energy = 6336.0864 kcal/mol (6319.3040 without restraints) Performing minimization step: 1626. Total energy = 6331.8585 kcal/mol (6315.0810 without restraints) Performing minimization step: 1627. Total energy = 6327.6354 kcal/mol (6310.8629 without restraints) Performing minimization step: 1628. Total energy = 6323.4170 kcal/mol (6306.6491 without restraints) Performing minimization step: 1629. Total energy = 6319.2038 kcal/mol (6302.4411 without restraints) Performing minimization step: 1630. Total energy = 6314.9960 kcal/mol (6298.2381 without restraints) Performing minimization step: 1631. Total energy = 6310.7930 kcal/mol (6294.0403 without restraints) Performing minimization step: 1632. Total energy = 6306.5948 kcal/mol (6289.8467 without restraints) Performing minimization step: 1633. Total energy = 6302.4013 kcal/mol (6285.6581 without restraints) Performing minimization step: 1634. Total energy = 6298.2129 kcal/mol (6281.4747 without restraints) Performing minimization step: 1635. Total energy = 6294.0294 kcal/mol (6277.2960 without restraints) Performing minimization step: 1636. Total energy = 6289.8504 kcal/mol (6273.1219 without restraints) Performing minimization step: 1637. Total energy = 6285.6762 kcal/mol (6268.9527 without restraints) Performing minimization step: 1638. Total energy = 6281.5072 kcal/mol (6264.7885 without restraints) Performing minimization step: 1639. Total energy = 6277.3428 kcal/mol (6260.6290 without restraints) Performing minimization step: 1640. Total energy = 6273.1839 kcal/mol (6256.4750 without restraints) Performing minimization step: 1641. Total energy = 6269.0292 kcal/mol (6252.3252 without restraints) Performing minimization step: 1642. Total energy = 6264.8798 kcal/mol (6248.1807 without restraints) Performing minimization step: 1643. Total energy = 6260.7349 kcal/mol (6244.0406 without restraints) Performing minimization step: 1644. Total energy = 6256.5951 kcal/mol (6239.9058 without restraints) Performing minimization step: 1645. Total energy = 6252.4600 kcal/mol (6235.7756 without restraints) Performing minimization step: 1646. Total energy = 6248.3302 kcal/mol (6231.6506 without restraints) Performing minimization step: 1647. Total energy = 6244.2048 kcal/mol (6227.5301 without restraints) Performing minimization step: 1648. Total energy = 6240.0847 kcal/mol (6223.4149 without restraints) Performing minimization step: 1649. Total energy = 6235.9690 kcal/mol (6219.3042 without restraints) Performing minimization step: 1650. Total energy = 6231.8578 kcal/mol (6215.1977 without restraints) Performing minimization step: 1651. Total energy = 6227.7515 kcal/mol (6211.0963 without restraints) Performing minimization step: 1652. Total energy = 6223.6501 kcal/mol (6206.9998 without restraints) Performing minimization step: 1653. Total energy = 6219.5533 kcal/mol (6202.9079 without restraints) Performing minimization step: 1654. Total energy = 6215.4615 kcal/mol (6198.8210 without restraints) Performing minimization step: 1655. Total energy = 6211.3740 kcal/mol (6194.7383 without restraints) Performing minimization step: 1656. Total energy = 6207.2917 kcal/mol (6190.6609 without restraints) Performing minimization step: 1657. Total energy = 6203.2143 kcal/mol (6186.5883 without restraints) Performing minimization step: 1658. Total energy = 6199.1412 kcal/mol (6182.5203 without restraints) Performing minimization step: 1659. Total energy = 6195.0733 kcal/mol (6178.4570 without restraints) Performing minimization step: 1660. Total energy = 6191.0099 kcal/mol (6174.3985 without restraints) Performing minimization step: 1661. Total energy = 6186.9508 kcal/mol (6170.3443 without restraints) Performing minimization step: 1662. Total energy = 6182.8966 kcal/mol (6166.2949 without restraints) Performing minimization step: 1663. Total energy = 6178.8466 kcal/mol (6162.2498 without restraints) Performing minimization step: 1664. Total energy = 6174.8026 kcal/mol (6158.2106 without restraints) Performing minimization step: 1665. Total energy = 6170.7625 kcal/mol (6154.1753 without restraints) Performing minimization step: 1666. Total energy = 6166.7272 kcal/mol (6150.1449 without restraints) Performing minimization step: 1667. Total energy = 6162.6964 kcal/mol (6146.1190 without restraints) Performing minimization step: 1668. Total energy = 6158.6703 kcal/mol (6142.0979 without restraints) Performing minimization step: 1669. Total energy = 6154.6488 kcal/mol (6138.0811 without restraints) Performing minimization step: 1670. Total energy = 6150.6318 kcal/mol (6134.0689 without restraints) Performing minimization step: 1671. Total energy = 6146.6199 kcal/mol (6130.0620 without restraints) Performing minimization step: 1672. Total energy = 6142.6127 kcal/mol (6126.0597 without restraints) Performing minimization step: 1673. Total energy = 6138.6101 kcal/mol (6122.0618 without restraints) Performing minimization step: 1674. Total energy = 6134.6117 kcal/mol (6118.0682 without restraints) Performing minimization step: 1675. Total energy = 6130.6180 kcal/mol (6114.0794 without restraints) Performing minimization step: 1676. Total energy = 6126.6289 kcal/mol (6110.0951 without restraints) Performing minimization step: 1677. Total energy = 6122.6443 kcal/mol (6106.1153 without restraints) Performing minimization step: 1678. Total energy = 6118.6644 kcal/mol (6102.1402 without restraints) Performing minimization step: 1679. Total energy = 6114.6886 kcal/mol (6098.1693 without restraints) Performing minimization step: 1680. Total energy = 6110.7177 kcal/mol (6094.2033 without restraints) Performing minimization step: 1681. Total energy = 6106.7513 kcal/mol (6090.2416 without restraints) Performing minimization step: 1682. Total energy = 6102.7894 kcal/mol (6086.2846 without restraints) Performing minimization step: 1683. Total energy = 6098.8323 kcal/mol (6082.3324 without restraints) Performing minimization step: 1684. Total energy = 6094.8799 kcal/mol (6078.3848 without restraints) Performing minimization step: 1685. Total energy = 6090.9319 kcal/mol (6074.4416 without restraints) Performing minimization step: 1686. Total energy = 6086.9881 kcal/mol (6070.5026 without restraints) Performing minimization step: 1687. Total energy = 6083.0492 kcal/mol (6066.5685 without restraints) Performing minimization step: 1688. Total energy = 6079.1146 kcal/mol (6062.6386 without restraints) Performing minimization step: 1689. Total energy = 6075.1845 kcal/mol (6058.7135 without restraints) Performing minimization step: 1690. Total energy = 6071.2592 kcal/mol (6054.7930 without restraints) Performing minimization step: 1691. Total energy = 6067.3385 kcal/mol (6050.8771 without restraints) Performing minimization step: 1692. Total energy = 6063.4221 kcal/mol (6046.9655 without restraints) Performing minimization step: 1693. Total energy = 6059.5104 kcal/mol (6043.0587 without restraints) Performing minimization step: 1694. Total energy = 6055.6030 kcal/mol (6039.1561 without restraints) Performing minimization step: 1695. Total energy = 6051.7001 kcal/mol (6035.2580 without restraints) Performing minimization step: 1696. Total energy = 6047.8019 kcal/mol (6031.3647 without restraints) Performing minimization step: 1697. Total energy = 6043.9081 kcal/mol (6027.4756 without restraints) Performing minimization step: 1698. Total energy = 6040.0186 kcal/mol (6023.5909 without restraints) Performing minimization step: 1699. Total energy = 6036.1336 kcal/mol (6019.7108 without restraints) Performing minimization step: 1700. Total energy = 6032.2530 kcal/mol (6015.8350 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 6028.3771 kcal/mol (6011.9639 without restraints) Performing minimization step: 1702. Total energy = 6024.5058 kcal/mol (6008.0974 without restraints) Performing minimization step: 1703. Total energy = 6020.6386 kcal/mol (6004.2350 without restraints) Performing minimization step: 1704. Total energy = 6016.7756 kcal/mol (6000.3768 without restraints) Performing minimization step: 1705. Total energy = 6012.9172 kcal/mol (5996.5232 without restraints) Performing minimization step: 1706. Total energy = 6009.0631 kcal/mol (5992.6739 without restraints) Performing minimization step: 1707. Total energy = 6005.2134 kcal/mol (5988.8291 without restraints) Performing minimization step: 1708. Total energy = 6001.3679 kcal/mol (5984.9883 without restraints) Performing minimization step: 1709. Total energy = 5997.5273 kcal/mol (5981.1527 without restraints) Performing minimization step: 1710. Total energy = 5993.6910 kcal/mol (5977.3210 without restraints) Performing minimization step: 1711. Total energy = 5989.8589 kcal/mol (5973.4937 without restraints) Performing minimization step: 1712. Total energy = 5986.0314 kcal/mol (5969.6710 without restraints) Performing minimization step: 1713. Total energy = 5982.2081 kcal/mol (5965.8525 without restraints) Performing minimization step: 1714. Total energy = 5978.3891 kcal/mol (5962.0382 without restraints) Performing minimization step: 1715. Total energy = 5974.5748 kcal/mol (5958.2287 without restraints) Performing minimization step: 1716. Total energy = 5970.7643 kcal/mol (5954.4231 without restraints) Performing minimization step: 1717. Total energy = 5966.9581 kcal/mol (5950.6216 without restraints) Performing minimization step: 1718. Total energy = 5963.1566 kcal/mol (5946.8250 without restraints) Performing minimization step: 1719. Total energy = 5959.3588 kcal/mol (5943.0319 without restraints) Performing minimization step: 1720. Total energy = 5955.5659 kcal/mol (5939.2438 without restraints) Performing minimization step: 1721. Total energy = 5951.7772 kcal/mol (5935.4599 without restraints) Performing minimization step: 1722. Total energy = 5947.9928 kcal/mol (5931.6802 without restraints) Performing minimization step: 1723. Total energy = 5944.2125 kcal/mol (5927.9048 without restraints) Performing minimization step: 1724. Total energy = 5940.4367 kcal/mol (5924.1338 without restraints) Performing minimization step: 1725. Total energy = 5936.6653 kcal/mol (5920.3671 without restraints) Performing minimization step: 1726. Total energy = 5932.8982 kcal/mol (5916.6048 without restraints) Performing minimization step: 1727. Total energy = 5929.1353 kcal/mol (5912.8466 without restraints) Performing minimization step: 1728. Total energy = 5925.3765 kcal/mol (5909.0927 without restraints) Performing minimization step: 1729. Total energy = 5921.6222 kcal/mol (5905.3431 without restraints) Performing minimization step: 1730. Total energy = 5917.8725 kcal/mol (5901.5983 without restraints) Performing minimization step: 1731. Total energy = 5914.1264 kcal/mol (5897.8569 without restraints) Performing minimization step: 1732. Total energy = 5910.3845 kcal/mol (5894.1197 without restraints) Performing minimization step: 1733. Total energy = 5906.6469 kcal/mol (5890.3868 without restraints) Performing minimization step: 1734. Total energy = 5902.9137 kcal/mol (5886.6584 without restraints) Performing minimization step: 1735. Total energy = 5899.1846 kcal/mol (5882.9341 without restraints) Performing minimization step: 1736. Total energy = 5895.4603 kcal/mol (5879.2148 without restraints) Performing minimization step: 1737. Total energy = 5891.7403 kcal/mol (5875.4993 without restraints) Performing minimization step: 1738. Total energy = 5888.0237 kcal/mol (5871.7875 without restraints) Performing minimization step: 1739. Total energy = 5884.3115 kcal/mol (5868.0801 without restraints) Performing minimization step: 1740. Total energy = 5880.6036 kcal/mol (5864.3769 without restraints) Performing minimization step: 1741. Total energy = 5876.9000 kcal/mol (5860.6781 without restraints) Performing minimization step: 1742. Total energy = 5873.2004 kcal/mol (5856.9833 without restraints) Performing minimization step: 1743. Total energy = 5869.5050 kcal/mol (5853.2927 without restraints) Performing minimization step: 1744. Total energy = 5865.8138 kcal/mol (5849.6062 without restraints) Performing minimization step: 1745. Total energy = 5862.1270 kcal/mol (5845.9242 without restraints) Performing minimization step: 1746. Total energy = 5858.4440 kcal/mol (5842.2458 without restraints) Performing minimization step: 1747. Total energy = 5854.7649 kcal/mol (5838.5715 without restraints) Performing minimization step: 1748. Total energy = 5851.0903 kcal/mol (5834.9017 without restraints) Performing minimization step: 1749. Total energy = 5847.4202 kcal/mol (5831.2364 without restraints) Performing minimization step: 1750. Total energy = 5843.7538 kcal/mol (5827.5747 without restraints) Performing minimization step: 1751. Total energy = 5840.0919 kcal/mol (5823.9175 without restraints) Performing minimization step: 1752. Total energy = 5836.4338 kcal/mol (5820.2642 without restraints) Performing minimization step: 1753. Total energy = 5832.7799 kcal/mol (5816.6150 without restraints) Performing minimization step: 1754. Total energy = 5829.1304 kcal/mol (5812.9702 without restraints) Performing minimization step: 1755. Total energy = 5825.4846 kcal/mol (5809.3293 without restraints) Performing minimization step: 1756. Total energy = 5821.8429 kcal/mol (5805.6922 without restraints) Performing minimization step: 1757. Total energy = 5818.2057 kcal/mol (5802.0599 without restraints) Performing minimization step: 1758. Total energy = 5814.5727 kcal/mol (5798.4316 without restraints) Performing minimization step: 1759. Total energy = 5810.9431 kcal/mol (5794.8067 without restraints) Performing minimization step: 1760. Total energy = 5807.3181 kcal/mol (5791.1864 without restraints) Performing minimization step: 1761. Total energy = 5803.6967 kcal/mol (5787.5698 without restraints) Performing minimization step: 1762. Total energy = 5800.0798 kcal/mol (5783.9577 without restraints) Performing minimization step: 1763. Total energy = 5796.4671 kcal/mol (5780.3497 without restraints) Performing minimization step: 1764. Total energy = 5792.8582 kcal/mol (5776.7455 without restraints) Performing minimization step: 1765. Total energy = 5789.2533 kcal/mol (5773.1453 without restraints) Performing minimization step: 1766. Total energy = 5785.6523 kcal/mol (5769.5490 without restraints) Performing minimization step: 1767. Total energy = 5782.0554 kcal/mol (5765.9568 without restraints) Performing minimization step: 1768. Total energy = 5778.4626 kcal/mol (5762.3688 without restraints) Performing minimization step: 1769. Total energy = 5774.8738 kcal/mol (5758.7847 without restraints) Performing minimization step: 1770. Total energy = 5771.2891 kcal/mol (5755.2048 without restraints) Performing minimization step: 1771. Total energy = 5767.7086 kcal/mol (5751.6290 without restraints) Performing minimization step: 1772. Total energy = 5764.1316 kcal/mol (5748.0567 without restraints) Performing minimization step: 1773. Total energy = 5760.5592 kcal/mol (5744.4890 without restraints) Performing minimization step: 1774. Total energy = 5756.9908 kcal/mol (5740.9253 without restraints) Performing minimization step: 1775. Total energy = 5753.4261 kcal/mol (5737.3652 without restraints) Performing minimization step: 1776. Total energy = 5749.8653 kcal/mol (5733.8093 without restraints) Performing minimization step: 1777. Total energy = 5746.3093 kcal/mol (5730.2582 without restraints) Performing minimization step: 1778. Total energy = 5742.7568 kcal/mol (5726.7102 without restraints) Performing minimization step: 1779. Total energy = 5739.2079 kcal/mol (5723.1660 without restraints) Performing minimization step: 1780. Total energy = 5735.6632 kcal/mol (5719.6260 without restraints) Performing minimization step: 1781. Total energy = 5732.1224 kcal/mol (5716.0900 without restraints) Performing minimization step: 1782. Total energy = 5728.5858 kcal/mol (5712.5581 without restraints) Performing minimization step: 1783. Total energy = 5725.0527 kcal/mol (5709.0297 without restraints) Performing minimization step: 1784. Total energy = 5721.5234 kcal/mol (5705.5051 without restraints) Performing minimization step: 1785. Total energy = 5717.9986 kcal/mol (5701.9851 without restraints) Performing minimization step: 1786. Total energy = 5714.4777 kcal/mol (5698.4688 without restraints) Performing minimization step: 1787. Total energy = 5710.9607 kcal/mol (5694.9567 without restraints) Performing minimization step: 1788. Total energy = 5707.4475 kcal/mol (5691.4478 without restraints) Performing minimization step: 1789. Total energy = 5703.9388 kcal/mol (5687.9443 without restraints) Performing minimization step: 1790. Total energy = 5700.4340 kcal/mol (5684.4439 without restraints) Performing minimization step: 1791. Total energy = 5696.9326 kcal/mol (5680.9472 without restraints) Performing minimization step: 1792. Total energy = 5693.4353 kcal/mol (5677.4547 without restraints) Performing minimization step: 1793. Total energy = 5689.9415 kcal/mol (5673.9656 without restraints) Performing minimization step: 1794. Total energy = 5686.4523 kcal/mol (5670.4811 without restraints) Performing minimization step: 1795. Total energy = 5682.9665 kcal/mol (5667.0000 without restraints) Performing minimization step: 1796. Total energy = 5679.4846 kcal/mol (5663.5228 without restraints) Performing minimization step: 1797. Total energy = 5676.0064 kcal/mol (5660.0492 without restraints) Performing minimization step: 1798. Total energy = 5672.5322 kcal/mol (5656.5797 without restraints) Performing minimization step: 1799. Total energy = 5669.0619 kcal/mol (5653.1141 without restraints) Performing minimization step: 1800. Total energy = 5665.5957 kcal/mol (5649.6527 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 5662.1332 kcal/mol (5646.1949 without restraints) Performing minimization step: 1802. Total energy = 5658.6744 kcal/mol (5642.7408 without restraints) Performing minimization step: 1803. Total energy = 5655.2198 kcal/mol (5639.2908 without restraints) Performing minimization step: 1804. Total energy = 5651.7686 kcal/mol (5635.8443 without restraints) Performing minimization step: 1805. Total energy = 5648.3215 kcal/mol (5632.4019 without restraints) Performing minimization step: 1806. Total energy = 5644.8782 kcal/mol (5628.9633 without restraints) Performing minimization step: 1807. Total energy = 5641.4385 kcal/mol (5625.5283 without restraints) Performing minimization step: 1808. Total energy = 5638.0033 kcal/mol (5622.0978 without restraints) Performing minimization step: 1809. Total energy = 5634.5714 kcal/mol (5618.6705 without restraints) Performing minimization step: 1810. Total energy = 5631.1432 kcal/mol (5615.2470 without restraints) Performing minimization step: 1811. Total energy = 5627.7192 kcal/mol (5611.8277 without restraints) Performing minimization step: 1812. Total energy = 5624.2985 kcal/mol (5608.4117 without restraints) Performing minimization step: 1813. Total energy = 5620.8818 kcal/mol (5604.9996 without restraints) Performing minimization step: 1814. Total energy = 5617.4689 kcal/mol (5601.5914 without restraints) Performing minimization step: 1815. Total energy = 5614.0598 kcal/mol (5598.1871 without restraints) Performing minimization step: 1816. Total energy = 5610.6547 kcal/mol (5594.7866 without restraints) Performing minimization step: 1817. Total energy = 5607.2532 kcal/mol (5591.3897 without restraints) Performing minimization step: 1818. Total energy = 5603.8552 kcal/mol (5587.9965 without restraints) Performing minimization step: 1819. Total energy = 5600.4610 kcal/mol (5584.6070 without restraints) Performing minimization step: 1820. Total energy = 5597.0707 kcal/mol (5581.2213 without restraints) Performing minimization step: 1821. Total energy = 5593.6844 kcal/mol (5577.8395 without restraints) Performing minimization step: 1822. Total energy = 5590.3015 kcal/mol (5574.4614 without restraints) Performing minimization step: 1823. Total energy = 5586.9226 kcal/mol (5571.0872 without restraints) Performing minimization step: 1824. Total energy = 5583.5477 kcal/mol (5567.7170 without restraints) Performing minimization step: 1825. Total energy = 5580.1763 kcal/mol (5564.3502 without restraints) Performing minimization step: 1826. Total energy = 5576.8088 kcal/mol (5560.9874 without restraints) Performing minimization step: 1827. Total energy = 5573.4449 kcal/mol (5557.6282 without restraints) Performing minimization step: 1828. Total energy = 5570.0846 kcal/mol (5554.2724 without restraints) Performing minimization step: 1829. Total energy = 5566.7283 kcal/mol (5550.9210 without restraints) Performing minimization step: 1830. Total energy = 5563.3756 kcal/mol (5547.5729 without restraints) Performing minimization step: 1831. Total energy = 5560.0264 kcal/mol (5544.2283 without restraints) Performing minimization step: 1832. Total energy = 5556.6815 kcal/mol (5540.8882 without restraints) Performing minimization step: 1833. Total energy = 5553.3398 kcal/mol (5537.5511 without restraints) Performing minimization step: 1834. Total energy = 5550.0016 kcal/mol (5534.2175 without restraints) Performing minimization step: 1835. Total energy = 5546.6670 kcal/mol (5530.8875 without restraints) Performing minimization step: 1836. Total energy = 5543.3364 kcal/mol (5527.5616 without restraints) Performing minimization step: 1837. Total energy = 5540.0092 kcal/mol (5524.2390 without restraints) Performing minimization step: 1838. Total energy = 5536.6857 kcal/mol (5520.9202 without restraints) Performing minimization step: 1839. Total energy = 5533.3663 kcal/mol (5517.6055 without restraints) Performing minimization step: 1840. Total energy = 5530.0508 kcal/mol (5514.2947 without restraints) Performing minimization step: 1841. Total energy = 5526.7388 kcal/mol (5510.9871 without restraints) Performing minimization step: 1842. Total energy = 5523.4302 kcal/mol (5507.6831 without restraints) Performing minimization step: 1843. Total energy = 5520.1253 kcal/mol (5504.3826 without restraints) Performing minimization step: 1844. Total energy = 5516.8242 kcal/mol (5501.0860 without restraints) Performing minimization step: 1845. Total energy = 5513.5280 kcal/mol (5497.7938 without restraints) Performing minimization step: 1846. Total energy = 5510.2361 kcal/mol (5494.5048 without restraints) Performing minimization step: 1847. Total energy = 5506.9553 kcal/mol (5491.2191 without restraints) Performing minimization step: 1848. Total energy = 5505.5234 kcal/mol (5487.9371 without restraints) Performing minimization step: 1849. Total energy = 5500.3953 kcal/mol (5484.6592 without restraints) Performing minimization step: 1850. Total energy = 5497.0977 kcal/mol (5481.3840 without restraints) Performing minimization step: 1851. Total energy = 5493.8194 kcal/mol (5478.1130 without restraints) Performing minimization step: 1852. Total energy = 5490.5467 kcal/mol (5474.8455 without restraints) Performing minimization step: 1853. Total energy = 5487.2777 kcal/mol (5471.5815 without restraints) Performing minimization step: 1854. Total energy = 5484.0126 kcal/mol (5468.3212 without restraints) Performing minimization step: 1855. Total energy = 5480.7507 kcal/mol (5465.0641 without restraints) Performing minimization step: 1856. Total energy = 5477.4928 kcal/mol (5461.8108 without restraints) Performing minimization step: 1857. Total energy = 5474.2384 kcal/mol (5458.5610 without restraints) Performing minimization step: 1858. Total energy = 5470.9879 kcal/mol (5455.3153 without restraints) Performing minimization step: 1859. Total energy = 5467.7409 kcal/mol (5452.0729 without restraints) Performing minimization step: 1860. Total energy = 5464.4972 kcal/mol (5448.8339 without restraints) Performing minimization step: 1861. Total energy = 5461.2574 kcal/mol (5445.5987 without restraints) Performing minimization step: 1862. Total energy = 5458.0210 kcal/mol (5442.3669 without restraints) Performing minimization step: 1863. Total energy = 5454.7884 kcal/mol (5439.1391 without restraints) Performing minimization step: 1864. Total energy = 5451.5590 kcal/mol (5435.9142 without restraints) Performing minimization step: 1865. Total energy = 5448.3331 kcal/mol (5432.6929 without restraints) Performing minimization step: 1866. Total energy = 5445.1105 kcal/mol (5429.4750 without restraints) Performing minimization step: 1867. Total energy = 5441.8917 kcal/mol (5426.2609 without restraints) Performing minimization step: 1868. Total energy = 5438.6767 kcal/mol (5423.0505 without restraints) Performing minimization step: 1869. Total energy = 5435.4648 kcal/mol (5419.8432 without restraints) Performing minimization step: 1870. Total energy = 5432.2572 kcal/mol (5416.6402 without restraints) Performing minimization step: 1871. Total energy = 5429.0529 kcal/mol (5413.4406 without restraints) Performing minimization step: 1872. Total energy = 5425.8522 kcal/mol (5410.2444 without restraints) Performing minimization step: 1873. Total energy = 5422.6545 kcal/mol (5407.0514 without restraints) Performing minimization step: 1874. Total energy = 5419.4603 kcal/mol (5403.8619 without restraints) Performing minimization step: 1875. Total energy = 5416.2702 kcal/mol (5400.6762 without restraints) Performing minimization step: 1876. Total energy = 5413.0834 kcal/mol (5397.4941 without restraints) Performing minimization step: 1877. Total energy = 5409.8997 kcal/mol (5394.3150 without restraints) Performing minimization step: 1878. Total energy = 5406.7199 kcal/mol (5391.1399 without restraints) Performing minimization step: 1879. Total energy = 5403.5434 kcal/mol (5387.9680 without restraints) Performing minimization step: 1880. Total energy = 5400.3704 kcal/mol (5384.7996 without restraints) Performing minimization step: 1881. Total energy = 5397.2006 kcal/mol (5381.6343 without restraints) Performing minimization step: 1882. Total energy = 5394.0343 kcal/mol (5378.4727 without restraints) Performing minimization step: 1883. Total energy = 5390.8716 kcal/mol (5375.3145 without restraints) Performing minimization step: 1884. Total energy = 5387.7122 kcal/mol (5372.1598 without restraints) Performing minimization step: 1885. Total energy = 5384.5566 kcal/mol (5369.0088 without restraints) Performing minimization step: 1886. Total energy = 5381.4044 kcal/mol (5365.8612 without restraints) Performing minimization step: 1887. Total energy = 5378.2554 kcal/mol (5362.7168 without restraints) Performing minimization step: 1888. Total energy = 5375.1102 kcal/mol (5359.5762 without restraints) Performing minimization step: 1889. Total energy = 5371.9681 kcal/mol (5356.4387 without restraints) Performing minimization step: 1890. Total energy = 5368.8295 kcal/mol (5353.3049 without restraints) Performing minimization step: 1891. Total energy = 5365.6948 kcal/mol (5350.1746 without restraints) Performing minimization step: 1892. Total energy = 5362.5630 kcal/mol (5347.0474 without restraints) Performing minimization step: 1893. Total energy = 5359.4349 kcal/mol (5343.9240 without restraints) Performing minimization step: 1894. Total energy = 5356.3100 kcal/mol (5340.8037 without restraints) Performing minimization step: 1895. Total energy = 5353.1887 kcal/mol (5337.6869 without restraints) Performing minimization step: 1896. Total energy = 5350.0706 kcal/mol (5334.5734 without restraints) Performing minimization step: 1897. Total energy = 5346.9555 kcal/mol (5331.4630 without restraints) Performing minimization step: 1898. Total energy = 5343.8444 kcal/mol (5328.3565 without restraints) Performing minimization step: 1899. Total energy = 5340.7366 kcal/mol (5325.2532 without restraints) Performing minimization step: 1900. Total energy = 5337.6320 kcal/mol (5322.1532 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 5334.5309 kcal/mol (5319.0567 without restraints) Performing minimization step: 1902. Total energy = 5331.4332 kcal/mol (5315.9637 without restraints) Performing minimization step: 1903. Total energy = 5328.3391 kcal/mol (5312.8741 without restraints) Performing minimization step: 1904. Total energy = 5325.2482 kcal/mol (5309.7878 without restraints) Performing minimization step: 1905. Total energy = 5322.1608 kcal/mol (5306.7049 without restraints) Performing minimization step: 1906. Total energy = 5319.0767 kcal/mol (5303.6255 without restraints) Performing minimization step: 1907. Total energy = 5315.9961 kcal/mol (5300.5494 without restraints) Performing minimization step: 1908. Total energy = 5312.9186 kcal/mol (5297.4765 without restraints) Performing minimization step: 1909. Total energy = 5309.8445 kcal/mol (5294.4070 without restraints) Performing minimization step: 1910. Total energy = 5306.7738 kcal/mol (5291.3409 without restraints) Performing minimization step: 1911. Total energy = 5303.7063 kcal/mol (5288.2780 without restraints) Performing minimization step: 1912. Total energy = 5300.6424 kcal/mol (5285.2187 without restraints) Performing minimization step: 1913. Total energy = 5297.5817 kcal/mol (5282.1625 without restraints) Performing minimization step: 1914. Total energy = 5294.5242 kcal/mol (5279.1096 without restraints) Performing minimization step: 1915. Total energy = 5291.4705 kcal/mol (5276.0604 without restraints) Performing minimization step: 1916. Total energy = 5288.4196 kcal/mol (5273.0142 without restraints) Performing minimization step: 1917. Total energy = 5285.3727 kcal/mol (5269.9718 without restraints) Performing minimization step: 1918. Total energy = 5282.3285 kcal/mol (5266.9321 without restraints) Performing minimization step: 1919. Total energy = 5279.2875 kcal/mol (5263.8957 without restraints) Performing minimization step: 1920. Total energy = 5276.2498 kcal/mol (5260.8627 without restraints) Performing minimization step: 1921. Total energy = 5273.2155 kcal/mol (5257.8330 without restraints) Performing minimization step: 1922. Total energy = 5270.1848 kcal/mol (5254.8067 without restraints) Performing minimization step: 1923. Total energy = 5267.1571 kcal/mol (5251.7836 without restraints) Performing minimization step: 1924. Total energy = 5264.1319 kcal/mol (5248.7630 without restraints) Performing minimization step: 1925. Total energy = 5261.1107 kcal/mol (5245.7466 without restraints) Performing minimization step: 1926. Total energy = 5258.0934 kcal/mol (5242.7339 without restraints) Performing minimization step: 1927. Total energy = 5255.0791 kcal/mol (5239.7239 without restraints) Performing minimization step: 1928. Total energy = 5252.0679 kcal/mol (5236.7173 without restraints) Performing minimization step: 1929. Total energy = 5249.0599 kcal/mol (5233.7138 without restraints) Performing minimization step: 1930. Total energy = 5246.0552 kcal/mol (5230.7138 without restraints) Performing minimization step: 1931. Total energy = 5243.0539 kcal/mol (5227.7170 without restraints) Performing minimization step: 1932. Total energy = 5240.0554 kcal/mol (5224.7229 without restraints) Performing minimization step: 1933. Total energy = 5237.0601 kcal/mol (5221.7322 without restraints) Performing minimization step: 1934. Total energy = 5234.0685 kcal/mol (5218.7453 without restraints) Performing minimization step: 1935. Total energy = 5231.0799 kcal/mol (5215.7612 without restraints) Performing minimization step: 1936. Total energy = 5228.0946 kcal/mol (5212.7805 without restraints) Performing minimization step: 1937. Total energy = 5225.1130 kcal/mol (5209.8034 without restraints) Performing minimization step: 1938. Total energy = 5222.1342 kcal/mol (5206.8291 without restraints) Performing minimization step: 1939. Total energy = 5219.1589 kcal/mol (5203.8584 without restraints) Performing minimization step: 1940. Total energy = 5216.1864 kcal/mol (5200.8904 without restraints) Performing minimization step: 1941. Total energy = 5213.2173 kcal/mol (5197.9259 without restraints) Performing minimization step: 1942. Total energy = 5210.2514 kcal/mol (5194.9645 without restraints) Performing minimization step: 1943. Total energy = 5207.2887 kcal/mol (5192.0064 without restraints) Performing minimization step: 1944. Total energy = 5204.3288 kcal/mol (5189.0510 without restraints) Performing minimization step: 1945. Total energy = 5201.3730 kcal/mol (5186.0998 without restraints) Performing minimization step: 1946. Total energy = 5198.4196 kcal/mol (5183.1508 without restraints) Performing minimization step: 1947. Total energy = 5195.4696 kcal/mol (5180.2055 without restraints) Performing minimization step: 1948. Total energy = 5192.5229 kcal/mol (5177.2634 without restraints) Performing minimization step: 1949. Total energy = 5189.5796 kcal/mol (5174.3246 without restraints) Performing minimization step: 1950. Total energy = 5186.6392 kcal/mol (5171.3890 without restraints) Performing minimization step: 1951. Total energy = 5183.7020 kcal/mol (5168.4562 without restraints) Performing minimization step: 1952. Total energy = 5180.7682 kcal/mol (5165.5268 without restraints) Performing minimization step: 1953. Total energy = 5177.8373 kcal/mol (5162.6003 without restraints) Performing minimization step: 1954. Total energy = 5174.9095 kcal/mol (5159.6771 without restraints) Performing minimization step: 1955. Total energy = 5171.9847 kcal/mol (5156.7569 without restraints) Performing minimization step: 1956. Total energy = 5169.0635 kcal/mol (5153.8402 without restraints) Performing minimization step: 1957. Total energy = 5166.1456 kcal/mol (5150.9269 without restraints) Performing minimization step: 1958. Total energy = 5163.2308 kcal/mol (5148.0166 without restraints) Performing minimization step: 1959. Total energy = 5160.3191 kcal/mol (5145.1095 without restraints) Performing minimization step: 1960. Total energy = 5157.4105 kcal/mol (5142.2054 without restraints) Performing minimization step: 1961. Total energy = 5154.5053 kcal/mol (5139.3048 without restraints) Performing minimization step: 1962. Total energy = 5151.6030 kcal/mol (5136.4070 without restraints) Performing minimization step: 1963. Total energy = 5148.7039 kcal/mol (5133.5124 without restraints) Performing minimization step: 1964. Total energy = 5145.8079 kcal/mol (5130.6209 without restraints) Performing minimization step: 1965. Total energy = 5142.9149 kcal/mol (5127.7325 without restraints) Performing minimization step: 1966. Total energy = 5140.0249 kcal/mol (5124.8469 without restraints) Performing minimization step: 1967. Total energy = 5137.1382 kcal/mol (5121.9648 without restraints) Performing minimization step: 1968. Total energy = 5134.2545 kcal/mol (5119.0856 without restraints) Performing minimization step: 1969. Total energy = 5131.3740 kcal/mol (5116.2097 without restraints) Performing minimization step: 1970. Total energy = 5128.4967 kcal/mol (5113.3368 without restraints) Performing minimization step: 1971. Total energy = 5125.6227 kcal/mol (5110.4673 without restraints) Performing minimization step: 1972. Total energy = 5122.7520 kcal/mol (5107.6013 without restraints) Performing minimization step: 1973. Total energy = 5119.8841 kcal/mol (5104.7378 without restraints) Performing minimization step: 1974. Total energy = 5117.0190 kcal/mol (5101.8773 without restraints) Performing minimization step: 1975. Total energy = 5114.1572 kcal/mol (5099.0199 without restraints) Performing minimization step: 1976. Total energy = 5111.2986 kcal/mol (5096.1660 without restraints) Performing minimization step: 1977. Total energy = 5108.4432 kcal/mol (5093.3150 without restraints) Performing minimization step: 1978. Total energy = 5105.5912 kcal/mol (5090.4676 without restraints) Performing minimization step: 1979. Total energy = 5102.7418 kcal/mol (5087.6226 without restraints) Performing minimization step: 1980. Total energy = 5099.8953 kcal/mol (5084.7806 without restraints) Performing minimization step: 1981. Total energy = 5097.0518 kcal/mol (5081.9417 without restraints) Performing minimization step: 1982. Total energy = 5094.2116 kcal/mol (5079.1061 without restraints) Performing minimization step: 1983. Total energy = 5091.3744 kcal/mol (5076.2733 without restraints) Performing minimization step: 1984. Total energy = 5088.5402 kcal/mol (5073.4435 without restraints) Performing minimization step: 1985. Total energy = 5085.7096 kcal/mol (5070.6174 without restraints) Performing minimization step: 1986. Total energy = 5082.8818 kcal/mol (5067.7942 without restraints) Performing minimization step: 1987. Total energy = 5080.0568 kcal/mol (5064.9737 without restraints) Performing minimization step: 1988. Total energy = 5077.2348 kcal/mol (5062.1562 without restraints) Performing minimization step: 1989. Total energy = 5074.4158 kcal/mol (5059.3417 without restraints) Performing minimization step: 1990. Total energy = 5071.5999 kcal/mol (5056.5303 without restraints) Performing minimization step: 1991. Total energy = 5068.7871 kcal/mol (5053.7221 without restraints) Performing minimization step: 1992. Total energy = 5065.9772 kcal/mol (5050.9166 without restraints) Performing minimization step: 1993. Total energy = 5063.1706 kcal/mol (5048.1144 without restraints) Performing minimization step: 1994. Total energy = 5060.3666 kcal/mol (5045.3150 without restraints) Performing minimization step: 1995. Total energy = 5057.5662 kcal/mol (5042.5191 without restraints) Performing minimization step: 1996. Total energy = 5054.7687 kcal/mol (5039.7260 without restraints) Performing minimization step: 1997. Total energy = 5051.9741 kcal/mol (5036.9360 without restraints) Performing minimization step: 1998. Total energy = 5049.1828 kcal/mol (5034.1491 without restraints) Performing minimization step: 1999. Total energy = 5046.3944 kcal/mol (5031.3653 without restraints) Performing minimization step: 2000. Total energy = 5043.6088 kcal/mol (5028.5841 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 5040.8258 kcal/mol (5025.8056 without restraints) Performing minimization step: 2002. Total energy = 5038.0458 kcal/mol (5023.0302 without restraints) Performing minimization step: 2003. Total energy = 5035.2693 kcal/mol (5020.2581 without restraints) Performing minimization step: 2004. Total energy = 5032.4957 kcal/mol (5017.4890 without restraints) Performing minimization step: 2005. Total energy = 5029.7246 kcal/mol (5014.7224 without restraints) Performing minimization step: 2006. Total energy = 5026.9567 kcal/mol (5011.9590 without restraints) Performing minimization step: 2007. Total energy = 5024.1914 kcal/mol (5009.1980 without restraints) Performing minimization step: 2008. Total energy = 5021.4294 kcal/mol (5006.4406 without restraints) Performing minimization step: 2009. Total energy = 5018.6706 kcal/mol (5003.6864 without restraints) Performing minimization step: 2010. Total energy = 5015.9147 kcal/mol (5000.9350 without restraints) Performing minimization step: 2011. Total energy = 5013.1620 kcal/mol (4998.1869 without restraints) Performing minimization step: 2012. Total energy = 5010.4122 kcal/mol (4995.4413 without restraints) Performing minimization step: 2013. Total energy = 5007.6657 kcal/mol (4992.6993 without restraints) Performing minimization step: 2014. Total energy = 5004.9215 kcal/mol (4989.9596 without restraints) Performing minimization step: 2015. Total energy = 5002.1802 kcal/mol (4987.2229 without restraints) Performing minimization step: 2016. Total energy = 4999.4418 kcal/mol (4984.4888 without restraints) Performing minimization step: 2017. Total energy = 4996.7065 kcal/mol (4981.7581 without restraints) Performing minimization step: 2018. Total energy = 4993.9742 kcal/mol (4979.0302 without restraints) Performing minimization step: 2019. Total energy = 4991.2449 kcal/mol (4976.3055 without restraints) Performing minimization step: 2020. Total energy = 4988.5185 kcal/mol (4973.5835 without restraints) Performing minimization step: 2021. Total energy = 4985.7948 kcal/mol (4970.8643 without restraints) Performing minimization step: 2022. Total energy = 4983.0741 kcal/mol (4968.1480 without restraints) Performing minimization step: 2023. Total energy = 4980.3566 kcal/mol (4965.4349 without restraints) Performing minimization step: 2024. Total energy = 4977.6414 kcal/mol (4962.7242 without restraints) Performing minimization step: 2025. Total energy = 4974.9293 kcal/mol (4960.0165 without restraints) Performing minimization step: 2026. Total energy = 4972.2203 kcal/mol (4957.3123 without restraints) Performing minimization step: 2027. Total energy = 4969.5145 kcal/mol (4954.6108 without restraints) Performing minimization step: 2028. Total energy = 4966.8116 kcal/mol (4951.9123 without restraints) Performing minimization step: 2029. Total energy = 4964.1112 kcal/mol (4949.2164 without restraints) Performing minimization step: 2030. Total energy = 4961.4139 kcal/mol (4946.5235 without restraints) Performing minimization step: 2031. Total energy = 4958.7196 kcal/mol (4943.8337 without restraints) Performing minimization step: 2032. Total energy = 4956.0280 kcal/mol (4941.1466 without restraints) Performing minimization step: 2033. Total energy = 4953.3393 kcal/mol (4938.4624 without restraints) Performing minimization step: 2034. Total energy = 4950.6539 kcal/mol (4935.7814 without restraints) Performing minimization step: 2035. Total energy = 4947.9712 kcal/mol (4933.1031 without restraints) Performing minimization step: 2036. Total energy = 4945.2912 kcal/mol (4930.4276 without restraints) Performing minimization step: 2037. Total energy = 4942.6137 kcal/mol (4927.7546 without restraints) Performing minimization step: 2038. Total energy = 4939.9397 kcal/mol (4925.0849 without restraints) Performing minimization step: 2039. Total energy = 4937.2681 kcal/mol (4922.4178 without restraints) Performing minimization step: 2040. Total energy = 4934.5994 kcal/mol (4919.7537 without restraints) Performing minimization step: 2041. Total energy = 4931.9334 kcal/mol (4917.0921 without restraints) Performing minimization step: 2042. Total energy = 4929.2706 kcal/mol (4914.4337 without restraints) Performing minimization step: 2043. Total energy = 4926.6106 kcal/mol (4911.7782 without restraints) Performing minimization step: 2044. Total energy = 4923.9536 kcal/mol (4909.1258 without restraints) Performing minimization step: 2045. Total energy = 4921.2998 kcal/mol (4906.4764 without restraints) Performing minimization step: 2046. Total energy = 4918.6485 kcal/mol (4903.8294 without restraints) Performing minimization step: 2047. Total energy = 4916.0000 kcal/mol (4901.1853 without restraints) Performing minimization step: 2048. Total energy = 4913.3543 kcal/mol (4898.5442 without restraints) Performing minimization step: 2049. Total energy = 4910.7115 kcal/mol (4895.9057 without restraints) Performing minimization step: 2050. Total energy = 4908.0717 kcal/mol (4893.2705 without restraints) Performing minimization step: 2051. Total energy = 4905.4347 kcal/mol (4890.6379 without restraints) Performing minimization step: 2052. Total energy = 4902.8003 kcal/mol (4888.0079 without restraints) Performing minimization step: 2053. Total energy = 4900.1689 kcal/mol (4885.3811 without restraints) Performing minimization step: 2054. Total energy = 4897.5404 kcal/mol (4882.7568 without restraints) Performing minimization step: 2055. Total energy = 4894.9144 kcal/mol (4880.1354 without restraints) Performing minimization step: 2056. Total energy = 4892.2913 kcal/mol (4877.5166 without restraints) Performing minimization step: 2057. Total energy = 4889.6711 kcal/mol (4874.9009 without restraints) Performing minimization step: 2058. Total energy = 4887.0536 kcal/mol (4872.2878 without restraints) Performing minimization step: 2059. Total energy = 4884.4389 kcal/mol (4869.6775 without restraints) Performing minimization step: 2060. Total energy = 4881.8267 kcal/mol (4867.0698 without restraints) Performing minimization step: 2061. Total energy = 4879.2176 kcal/mol (4864.4651 without restraints) Performing minimization step: 2062. Total energy = 4876.6119 kcal/mol (4861.8641 without restraints) Performing minimization step: 2063. Total energy = 4874.0086 kcal/mol (4859.2649 without restraints) Performing minimization step: 2064. Total energy = 4871.4075 kcal/mol (4856.6683 without restraints) Performing minimization step: 2065. Total energy = 4868.8096 kcal/mol (4854.0748 without restraints) Performing minimization step: 2066. Total energy = 4866.2146 kcal/mol (4851.4843 without restraints) Performing minimization step: 2067. Total energy = 4863.6223 kcal/mol (4848.8964 without restraints) Performing minimization step: 2068. Total energy = 4861.0327 kcal/mol (4846.3112 without restraints) Performing minimization step: 2069. Total energy = 4858.4459 kcal/mol (4843.7287 without restraints) Performing minimization step: 2070. Total energy = 4855.8618 kcal/mol (4841.1493 without restraints) Performing minimization step: 2071. Total energy = 4853.2807 kcal/mol (4838.5726 without restraints) Performing minimization step: 2072. Total energy = 4850.7023 kcal/mol (4835.9985 without restraints) Performing minimization step: 2073. Total energy = 4848.1270 kcal/mol (4833.4278 without restraints) Performing minimization step: 2074. Total energy = 4845.5540 kcal/mol (4830.8591 without restraints) Performing minimization step: 2075. Total energy = 4842.9838 kcal/mol (4828.2932 without restraints) Performing minimization step: 2076. Total energy = 4840.4168 kcal/mol (4825.7306 without restraints) Performing minimization step: 2077. Total energy = 4837.8520 kcal/mol (4823.1702 without restraints) Performing minimization step: 2078. Total energy = 4835.2899 kcal/mol (4820.6127 without restraints) Performing minimization step: 2079. Total energy = 4832.7307 kcal/mol (4818.0577 without restraints) Performing minimization step: 2080. Total energy = 4830.1749 kcal/mol (4815.5064 without restraints) Performing minimization step: 2081. Total energy = 4827.6213 kcal/mol (4812.9572 without restraints) Performing minimization step: 2082. Total energy = 4825.0700 kcal/mol (4810.4104 without restraints) Performing minimization step: 2083. Total energy = 4822.5217 kcal/mol (4807.8664 without restraints) Performing minimization step: 2084. Total energy = 4819.9758 kcal/mol (4805.3249 without restraints) Performing minimization step: 2085. Total energy = 4817.4329 kcal/mol (4802.7865 without restraints) Performing minimization step: 2086. Total energy = 4814.8928 kcal/mol (4800.2509 without restraints) Performing minimization step: 2087. Total energy = 4812.3555 kcal/mol (4797.7179 without restraints) Performing minimization step: 2088. Total energy = 4809.8208 kcal/mol (4795.1875 without restraints) Performing minimization step: 2089. Total energy = 4807.2894 kcal/mol (4792.6606 without restraints) Performing minimization step: 2090. Total energy = 4804.7601 kcal/mol (4790.1357 without restraints) Performing minimization step: 2091. Total energy = 4802.2336 kcal/mol (4787.6135 without restraints) Performing minimization step: 2092. Total energy = 4799.7100 kcal/mol (4785.0944 without restraints) Performing minimization step: 2093. Total energy = 4797.1887 kcal/mol (4782.5775 without restraints) Performing minimization step: 2094. Total energy = 4794.6702 kcal/mol (4780.0634 without restraints) Performing minimization step: 2095. Total energy = 4792.1551 kcal/mol (4777.5526 without restraints) Performing minimization step: 2096. Total energy = 4789.6419 kcal/mol (4775.0439 without restraints) Performing minimization step: 2097. Total energy = 4787.1316 kcal/mol (4772.5380 without restraints) Performing minimization step: 2098. Total energy = 4784.6238 kcal/mol (4770.0346 without restraints) Performing minimization step: 2099. Total energy = 4782.1189 kcal/mol (4767.5341 without restraints) Performing minimization step: 2100. Total energy = 4779.6170 kcal/mol (4765.0365 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 4777.1169 kcal/mol (4762.5408 without restraints) Performing minimization step: 2102. Total energy = 4774.6198 kcal/mol (4760.0482 without restraints) Performing minimization step: 2103. Total energy = 4772.1254 kcal/mol (4757.5581 without restraints) Performing minimization step: 2104. Total energy = 4769.6337 kcal/mol (4755.0707 without restraints) Performing minimization step: 2105. Total energy = 4767.1445 kcal/mol (4752.5860 without restraints) Performing minimization step: 2106. Total energy = 4764.6579 kcal/mol (4750.1038 without restraints) Performing minimization step: 2107. Total energy = 4762.1742 kcal/mol (4747.6246 without restraints) Performing minimization step: 2108. Total energy = 4759.6931 kcal/mol (4745.1477 without restraints) Performing minimization step: 2109. Total energy = 4757.2147 kcal/mol (4742.6737 without restraints) Performing minimization step: 2110. Total energy = 4754.7394 kcal/mol (4740.2028 without restraints) Performing minimization step: 2111. Total energy = 4752.2660 kcal/mol (4737.7339 without restraints) Performing minimization step: 2112. Total energy = 4749.7959 kcal/mol (4735.2680 without restraints) Performing minimization step: 2113. Total energy = 4747.3281 kcal/mol (4732.8047 without restraints) Performing minimization step: 2114. Total energy = 4744.8627 kcal/mol (4730.3436 without restraints) Performing minimization step: 2115. Total energy = 4742.4001 kcal/mol (4727.8856 without restraints) Performing minimization step: 2116. Total energy = 4739.9405 kcal/mol (4725.4302 without restraints) Performing minimization step: 2117. Total energy = 4737.4833 kcal/mol (4722.9774 without restraints) Performing minimization step: 2118. Total energy = 4735.0286 kcal/mol (4720.5270 without restraints) Performing minimization step: 2119. Total energy = 4732.5764 kcal/mol (4718.0792 without restraints) Performing minimization step: 2120. Total energy = 4730.1269 kcal/mol (4715.6341 without restraints) Performing minimization step: 2121. Total energy = 4727.6802 kcal/mol (4713.1918 without restraints) Performing minimization step: 2122. Total energy = 4725.2360 kcal/mol (4710.7519 without restraints) Performing minimization step: 2123. Total energy = 4722.7948 kcal/mol (4708.3151 without restraints) Performing minimization step: 2124. Total energy = 4720.3562 kcal/mol (4705.8808 without restraints) Performing minimization step: 2125. Total energy = 4717.9198 kcal/mol (4703.4489 without restraints) Performing minimization step: 2126. Total energy = 4715.4861 kcal/mol (4701.0195 without restraints) Performing minimization step: 2127. Total energy = 4713.0551 kcal/mol (4698.5929 without restraints) Performing minimization step: 2128. Total energy = 4710.6269 kcal/mol (4696.1690 without restraints) Performing minimization step: 2129. Total energy = 4708.2007 kcal/mol (4693.7472 without restraints) Performing minimization step: 2130. Total energy = 4705.7776 kcal/mol (4691.3285 without restraints) Performing minimization step: 2131. Total energy = 4703.3568 kcal/mol (4688.9118 without restraints) Performing minimization step: 2132. Total energy = 4700.9387 kcal/mol (4686.4983 without restraints) Performing minimization step: 2133. Total energy = 4698.5234 kcal/mol (4684.0875 without restraints) Performing minimization step: 2134. Total energy = 4696.1107 kcal/mol (4681.6790 without restraints) Performing minimization step: 2135. Total energy = 4693.7005 kcal/mol (4679.2732 without restraints) Performing minimization step: 2136. Total energy = 4691.2925 kcal/mol (4676.8696 without restraints) Performing minimization step: 2137. Total energy = 4688.8877 kcal/mol (4674.4691 without restraints) Performing minimization step: 2138. Total energy = 4686.4854 kcal/mol (4672.0711 without restraints) Performing minimization step: 2139. Total energy = 4684.0854 kcal/mol (4669.6756 without restraints) Performing minimization step: 2140. Total energy = 4681.6883 kcal/mol (4667.2827 without restraints) Performing minimization step: 2141. Total energy = 4679.2937 kcal/mol (4664.8926 without restraints) Performing minimization step: 2142. Total energy = 4676.9015 kcal/mol (4662.5047 without restraints) Performing minimization step: 2143. Total energy = 4674.5118 kcal/mol (4660.1192 without restraints) Performing minimization step: 2144. Total energy = 4672.1243 kcal/mol (4657.7362 without restraints) Performing minimization step: 2145. Total energy = 4669.7402 kcal/mol (4655.3564 without restraints) Performing minimization step: 2146. Total energy = 4667.3579 kcal/mol (4652.9784 without restraints) Performing minimization step: 2147. Total energy = 4664.9785 kcal/mol (4650.6034 without restraints) Performing minimization step: 2148. Total energy = 4662.6013 kcal/mol (4648.2305 without restraints) Performing minimization step: 2149. Total energy = 4660.2269 kcal/mol (4645.8605 without restraints) Performing minimization step: 2150. Total energy = 4657.8549 kcal/mol (4643.4928 without restraints) Performing minimization step: 2151. Total energy = 4655.4855 kcal/mol (4641.1278 without restraints) Performing minimization step: 2152. Total energy = 4653.1189 kcal/mol (4638.7656 without restraints) Performing minimization step: 2153. Total energy = 4650.7545 kcal/mol (4636.4055 without restraints) Performing minimization step: 2154. Total energy = 4648.3924 kcal/mol (4634.0477 without restraints) Performing minimization step: 2155. Total energy = 4646.0331 kcal/mol (4631.6928 without restraints) Performing minimization step: 2156. Total energy = 4643.6763 kcal/mol (4629.3403 without restraints) Performing minimization step: 2157. Total energy = 4641.3219 kcal/mol (4626.9902 without restraints) Performing minimization step: 2158. Total energy = 4638.9701 kcal/mol (4624.6428 without restraints) Performing minimization step: 2159. Total energy = 4636.6206 kcal/mol (4622.2975 without restraints) Performing minimization step: 2160. Total energy = 4634.2738 kcal/mol (4619.9550 without restraints) Performing minimization step: 2161. Total energy = 4631.9299 kcal/mol (4617.6158 without restraints) Performing minimization step: 2162. Total energy = 4629.5888 kcal/mol (4615.2788 without restraints) Performing minimization step: 2163. Total energy = 4627.2495 kcal/mol (4612.9438 without restraints) Performing minimization step: 2164. Total energy = 4624.9135 kcal/mol (4610.6121 without restraints) Performing minimization step: 2165. Total energy = 4622.5787 kcal/mol (4608.2816 without restraints) Performing minimization step: 2166. Total energy = 4620.2475 kcal/mol (4605.9547 without restraints) Performing minimization step: 2167. Total energy = 4617.9179 kcal/mol (4603.6295 without restraints) Performing minimization step: 2168. Total energy = 4615.5912 kcal/mol (4601.3072 without restraints) Performing minimization step: 2169. Total energy = 4613.2669 kcal/mol (4598.9871 without restraints) Performing minimization step: 2170. Total energy = 4610.9453 kcal/mol (4596.6700 without restraints) Performing minimization step: 2171. Total energy = 4608.6260 kcal/mol (4594.3549 without restraints) Performing minimization step: 2172. Total energy = 4606.3091 kcal/mol (4592.0423 without restraints) Performing minimization step: 2173. Total energy = 4603.9943 kcal/mol (4589.7318 without restraints) Performing minimization step: 2174. Total energy = 4601.6824 kcal/mol (4587.4242 without restraints) Performing minimization step: 2175. Total energy = 4599.3730 kcal/mol (4585.1191 without restraints) Performing minimization step: 2176. Total energy = 4597.0662 kcal/mol (4582.8167 without restraints) Performing minimization step: 2177. Total energy = 4594.7618 kcal/mol (4580.5166 without restraints) Performing minimization step: 2178. Total energy = 4592.4602 kcal/mol (4578.2193 without restraints) Performing minimization step: 2179. Total energy = 4590.1606 kcal/mol (4575.9240 without restraints) Performing minimization step: 2180. Total energy = 4587.8634 kcal/mol (4573.6311 without restraints) Performing minimization step: 2181. Total energy = 4585.5689 kcal/mol (4571.3409 without restraints) Performing minimization step: 2182. Total energy = 4583.2767 kcal/mol (4569.0532 without restraints) Performing minimization step: 2183. Total energy = 4580.9871 kcal/mol (4566.7678 without restraints) Performing minimization step: 2184. Total energy = 4578.7000 kcal/mol (4564.4849 without restraints) Performing minimization step: 2185. Total energy = 4576.4151 kcal/mol (4562.2043 without restraints) Performing minimization step: 2186. Total energy = 4574.1326 kcal/mol (4559.9261 without restraints) Performing minimization step: 2187. Total energy = 4571.8531 kcal/mol (4557.6510 without restraints) Performing minimization step: 2188. Total energy = 4569.5754 kcal/mol (4555.3776 without restraints) Performing minimization step: 2189. Total energy = 4567.3005 kcal/mol (4553.1070 without restraints) Performing minimization step: 2190. Total energy = 4565.0277 kcal/mol (4550.8385 without restraints) Performing minimization step: 2191. Total energy = 4562.7575 kcal/mol (4548.5727 without restraints) Performing minimization step: 2192. Total energy = 4560.4896 kcal/mol (4546.3089 without restraints) Performing minimization step: 2193. Total energy = 4558.2238 kcal/mol (4544.0475 without restraints) Performing minimization step: 2194. Total energy = 4555.9609 kcal/mol (4541.7889 without restraints) Performing minimization step: 2195. Total energy = 4553.7003 kcal/mol (4539.5326 without restraints) Performing minimization step: 2196. Total energy = 4551.4422 kcal/mol (4537.2787 without restraints) Performing minimization step: 2197. Total energy = 4549.1866 kcal/mol (4535.0275 without restraints) Performing minimization step: 2198. Total energy = 4546.9335 kcal/mol (4532.7787 without restraints) Performing minimization step: 2199. Total energy = 4544.6822 kcal/mol (4530.5317 without restraints) Performing minimization step: 2200. Total energy = 4542.4336 kcal/mol (4528.2874 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 4540.1874 kcal/mol (4526.0455 without restraints) Performing minimization step: 2202. Total energy = 4537.9436 kcal/mol (4523.8059 without restraints) Performing minimization step: 2203. Total energy = 4535.7024 kcal/mol (4521.5690 without restraints) Performing minimization step: 2204. Total energy = 4533.4633 kcal/mol (4519.3342 without restraints) Performing minimization step: 2205. Total energy = 4531.2267 kcal/mol (4517.1019 without restraints) Performing minimization step: 2206. Total energy = 4528.9925 kcal/mol (4514.8719 without restraints) Performing minimization step: 2207. Total energy = 4526.7606 kcal/mol (4512.6443 without restraints) Performing minimization step: 2208. Total energy = 4524.5313 kcal/mol (4510.4193 without restraints) Performing minimization step: 2209. Total energy = 4522.3047 kcal/mol (4508.1971 without restraints) Performing minimization step: 2210. Total energy = 4520.0802 kcal/mol (4505.9768 without restraints) Performing minimization step: 2211. Total energy = 4517.8580 kcal/mol (4503.7589 without restraints) Performing minimization step: 2212. Total energy = 4515.6381 kcal/mol (4501.5433 without restraints) Performing minimization step: 2213. Total energy = 4513.4210 kcal/mol (4499.3305 without restraints) Performing minimization step: 2214. Total energy = 4511.2059 kcal/mol (4497.1197 without restraints) Performing minimization step: 2215. Total energy = 4508.9937 kcal/mol (4494.9120 without restraints) Performing minimization step: 2216. Total energy = 4506.7834 kcal/mol (4492.7057 without restraints) Performing minimization step: 2217. Total energy = 4504.5759 kcal/mol (4490.5025 without restraints) Performing minimization step: 2218. Total energy = 4502.3705 kcal/mol (4488.3013 without restraints) Performing minimization step: 2219. Total energy = 4500.1670 kcal/mol (4486.1020 without restraints) Performing minimization step: 2220. Total energy = 4497.9660 kcal/mol (4483.9054 without restraints) Performing minimization step: 2221. Total energy = 4495.7672 kcal/mol (4481.7108 without restraints) Performing minimization step: 2222. Total energy = 4493.5706 kcal/mol (4479.5185 without restraints) Performing minimization step: 2223. Total energy = 4491.3764 kcal/mol (4477.3285 without restraints) Performing minimization step: 2224. Total energy = 4489.1846 kcal/mol (4475.1410 without restraints) Performing minimization step: 2225. Total energy = 4486.9946 kcal/mol (4472.9552 without restraints) Performing minimization step: 2226. Total energy = 4484.8077 kcal/mol (4470.7727 without restraints) Performing minimization step: 2227. Total energy = 4482.6228 kcal/mol (4468.5920 without restraints) Performing minimization step: 2228. Total energy = 4480.4404 kcal/mol (4466.4139 without restraints) Performing minimization step: 2229. Total energy = 4478.2602 kcal/mol (4464.2380 without restraints) Performing minimization step: 2230. Total energy = 4476.0824 kcal/mol (4462.0644 without restraints) Performing minimization step: 2231. Total energy = 4473.9071 kcal/mol (4459.8932 without restraints) Performing minimization step: 2232. Total energy = 4471.7341 kcal/mol (4457.7246 without restraints) Performing minimization step: 2233. Total energy = 4469.5637 kcal/mol (4455.5585 without restraints) Performing minimization step: 2234. Total energy = 4467.3953 kcal/mol (4453.3943 without restraints) Performing minimization step: 2235. Total energy = 4465.2291 kcal/mol (4451.2324 without restraints) Performing minimization step: 2236. Total energy = 4463.0655 kcal/mol (4449.0732 without restraints) Performing minimization step: 2237. Total energy = 4460.9040 kcal/mol (4446.9159 without restraints) Performing minimization step: 2238. Total energy = 4458.7446 kcal/mol (4444.7607 without restraints) Performing minimization step: 2239. Total energy = 4456.5877 kcal/mol (4442.6080 without restraints) Performing minimization step: 2240. Total energy = 4454.4331 kcal/mol (4440.4577 without restraints) Performing minimization step: 2241. Total energy = 4452.2808 kcal/mol (4438.3096 without restraints) Performing minimization step: 2242. Total energy = 4450.1303 kcal/mol (4436.1634 without restraints) Performing minimization step: 2243. Total energy = 4447.9825 kcal/mol (4434.0198 without restraints) Performing minimization step: 2244. Total energy = 4445.8373 kcal/mol (4431.8788 without restraints) Performing minimization step: 2245. Total energy = 4443.6943 kcal/mol (4429.7401 without restraints) Performing minimization step: 2246. Total energy = 4441.5532 kcal/mol (4427.6033 without restraints) Performing minimization step: 2247. Total energy = 4439.4148 kcal/mol (4425.4691 without restraints) Performing minimization step: 2248. Total energy = 4437.2785 kcal/mol (4423.3370 without restraints) Performing minimization step: 2249. Total energy = 4435.1444 kcal/mol (4421.2072 without restraints) Performing minimization step: 2250. Total energy = 4433.0123 kcal/mol (4419.0793 without restraints) Performing minimization step: 2251. Total energy = 4430.8824 kcal/mol (4416.9537 without restraints) Performing minimization step: 2252. Total energy = 4428.7552 kcal/mol (4414.8307 without restraints) Performing minimization step: 2253. Total energy = 4426.6307 kcal/mol (4412.7105 without restraints) Performing minimization step: 2254. Total energy = 4424.5081 kcal/mol (4410.5920 without restraints) Performing minimization step: 2255. Total energy = 4422.3878 kcal/mol (4408.4759 without restraints) Performing minimization step: 2256. Total energy = 4420.2696 kcal/mol (4406.3621 without restraints) Performing minimization step: 2257. Total energy = 4418.1533 kcal/mol (4404.2500 without restraints) Performing minimization step: 2258. Total energy = 4416.0397 kcal/mol (4402.1406 without restraints) Performing minimization step: 2259. Total energy = 4413.9286 kcal/mol (4400.0337 without restraints) Performing minimization step: 2260. Total energy = 4411.8194 kcal/mol (4397.9288 without restraints) Performing minimization step: 2261. Total energy = 4409.7125 kcal/mol (4395.8261 without restraints) Performing minimization step: 2262. Total energy = 4407.6077 kcal/mol (4393.7255 without restraints) Performing minimization step: 2263. Total energy = 4405.5053 kcal/mol (4391.6274 without restraints) Performing minimization step: 2264. Total energy = 4403.4054 kcal/mol (4389.5316 without restraints) Performing minimization step: 2265. Total energy = 4401.3076 kcal/mol (4387.4382 without restraints) Performing minimization step: 2266. Total energy = 4399.2118 kcal/mol (4385.3465 without restraints) Performing minimization step: 2267. Total energy = 4397.1184 kcal/mol (4383.2575 without restraints) Performing minimization step: 2268. Total energy = 4395.0273 kcal/mol (4381.1705 without restraints) Performing minimization step: 2269. Total energy = 4392.9382 kcal/mol (4379.0855 without restraints) Performing minimization step: 2270. Total energy = 4390.8513 kcal/mol (4377.0029 without restraints) Performing minimization step: 2271. Total energy = 4388.7670 kcal/mol (4374.9228 without restraints) Performing minimization step: 2272. Total energy = 4386.6846 kcal/mol (4372.8446 without restraints) Performing minimization step: 2273. Total energy = 4384.6044 kcal/mol (4370.7686 without restraints) Performing minimization step: 2274. Total energy = 4382.5265 kcal/mol (4368.6949 without restraints) Performing minimization step: 2275. Total energy = 4380.4507 kcal/mol (4366.6234 without restraints) Performing minimization step: 2276. Total energy = 4378.3772 kcal/mol (4364.5541 without restraints) Performing minimization step: 2277. Total energy = 4376.3059 kcal/mol (4362.4871 without restraints) Performing minimization step: 2278. Total energy = 4374.2371 kcal/mol (4360.4224 without restraints) Performing minimization step: 2279. Total energy = 4372.1701 kcal/mol (4358.3596 without restraints) Performing minimization step: 2280. Total energy = 4370.1053 kcal/mol (4356.2990 without restraints) Performing minimization step: 2281. Total energy = 4368.0428 kcal/mol (4354.2408 without restraints) Performing minimization step: 2282. Total energy = 4365.9827 kcal/mol (4352.1848 without restraints) Performing minimization step: 2283. Total energy = 4363.9244 kcal/mol (4350.1306 without restraints) Performing minimization step: 2284. Total energy = 4361.8684 kcal/mol (4348.0789 without restraints) Performing minimization step: 2285. Total energy = 4359.8148 kcal/mol (4346.0295 without restraints) Performing minimization step: 2286. Total energy = 4357.7633 kcal/mol (4343.9822 without restraints) Performing minimization step: 2287. Total energy = 4355.7135 kcal/mol (4341.9366 without restraints) Performing minimization step: 2288. Total energy = 4353.6666 kcal/mol (4339.8939 without restraints) Performing minimization step: 2289. Total energy = 4351.6214 kcal/mol (4337.8530 without restraints) Performing minimization step: 2290. Total energy = 4349.5785 kcal/mol (4335.8142 without restraints) Performing minimization step: 2291. Total energy = 4347.5380 kcal/mol (4333.7779 without restraints) Performing minimization step: 2292. Total energy = 4345.4994 kcal/mol (4331.7435 without restraints) Performing minimization step: 2293. Total energy = 4343.4631 kcal/mol (4329.7116 without restraints) Performing minimization step: 2294. Total energy = 4341.4292 kcal/mol (4327.6817 without restraints) Performing minimization step: 2295. Total energy = 4339.3975 kcal/mol (4325.6542 without restraints) Performing minimization step: 2296. Total energy = 4337.3678 kcal/mol (4323.6287 without restraints) Performing minimization step: 2297. Total energy = 4335.3399 kcal/mol (4321.6051 without restraints) Performing minimization step: 2298. Total energy = 4333.3146 kcal/mol (4319.5839 without restraints) Performing minimization step: 2299. Total energy = 4331.2915 kcal/mol (4317.5651 without restraints) Performing minimization step: 2300. Total energy = 4329.2706 kcal/mol (4315.5483 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 4327.2523 kcal/mol (4313.5346 without restraints) Performing minimization step: 2302. Total energy = 4325.2356 kcal/mol (4311.5216 without restraints) Performing minimization step: 2303. Total energy = 4323.2210 kcal/mol (4309.5112 without restraints) Performing minimization step: 2304. Total energy = 4321.2084 kcal/mol (4307.5028 without restraints) Performing minimization step: 2305. Total energy = 4319.1981 kcal/mol (4305.4966 without restraints) Performing minimization step: 2306. Total energy = 4317.1895 kcal/mol (4303.4922 without restraints) Performing minimization step: 2307. Total energy = 4315.1835 kcal/mol (4301.4903 without restraints) Performing minimization step: 2308. Total energy = 4313.1792 kcal/mol (4299.4903 without restraints) Performing minimization step: 2309. Total energy = 4311.1768 kcal/mol (4297.4920 without restraints) Performing minimization step: 2310. Total energy = 4309.1763 kcal/mol (4295.4956 without restraints) Performing minimization step: 2311. Total energy = 4307.1779 kcal/mol (4293.5015 without restraints) Performing minimization step: 2312. Total energy = 4305.1819 kcal/mol (4291.5096 without restraints) Performing minimization step: 2313. Total energy = 4303.1884 kcal/mol (4289.5204 without restraints) Performing minimization step: 2314. Total energy = 4301.1971 kcal/mol (4287.5332 without restraints) Performing minimization step: 2315. Total energy = 4299.2078 kcal/mol (4285.5482 without restraints) Performing minimization step: 2316. Total energy = 4297.2208 kcal/mol (4283.5653 without restraints) Performing minimization step: 2317. Total energy = 4295.2358 kcal/mol (4281.5844 without restraints) Performing minimization step: 2318. Total energy = 4293.2526 kcal/mol (4279.6056 without restraints) Performing minimization step: 2319. Total energy = 4291.2720 kcal/mol (4277.6289 without restraints) Performing minimization step: 2320. Total energy = 4289.2931 kcal/mol (4275.6541 without restraints) Performing minimization step: 2321. Total energy = 4287.3167 kcal/mol (4273.6819 without restraints) Performing minimization step: 2322. Total energy = 4285.3422 kcal/mol (4271.7116 without restraints) Performing minimization step: 2323. Total energy = 4283.3695 kcal/mol (4269.7430 without restraints) Performing minimization step: 2324. Total energy = 4281.3991 kcal/mol (4267.7769 without restraints) Performing minimization step: 2325. Total energy = 4279.4307 kcal/mol (4265.8126 without restraints) Performing minimization step: 2326. Total energy = 4277.4646 kcal/mol (4263.8509 without restraints) Performing minimization step: 2327. Total energy = 4275.5005 kcal/mol (4261.8907 without restraints) Performing minimization step: 2328. Total energy = 4273.5385 kcal/mol (4259.9329 without restraints) Performing minimization step: 2329. Total energy = 4271.5788 kcal/mol (4257.9773 without restraints) Performing minimization step: 2330. Total energy = 4269.6210 kcal/mol (4256.0240 without restraints) Performing minimization step: 2331. Total energy = 4267.6655 kcal/mol (4254.0724 without restraints) Performing minimization step: 2332. Total energy = 4265.7116 kcal/mol (4252.1226 without restraints) Performing minimization step: 2333. Total energy = 4263.7597 kcal/mol (4250.1749 without restraints) Performing minimization step: 2334. Total energy = 4261.8099 kcal/mol (4248.2292 without restraints) Performing minimization step: 2335. Total energy = 4259.8620 kcal/mol (4246.2855 without restraints) Performing minimization step: 2336. Total energy = 4257.9168 kcal/mol (4244.3444 without restraints) Performing minimization step: 2337. Total energy = 4255.9734 kcal/mol (4242.4052 without restraints) Performing minimization step: 2338. Total energy = 4254.0314 kcal/mol (4240.4674 without restraints) Performing minimization step: 2339. Total energy = 4252.0918 kcal/mol (4238.5318 without restraints) Performing minimization step: 2340. Total energy = 4250.1542 kcal/mol (4236.5984 without restraints) Performing minimization step: 2341. Total energy = 4248.2192 kcal/mol (4234.6676 without restraints) Performing minimization step: 2342. Total energy = 4246.2859 kcal/mol (4232.7384 without restraints) Performing minimization step: 2343. Total energy = 4244.3548 kcal/mol (4230.8114 without restraints) Performing minimization step: 2344. Total energy = 4242.4255 kcal/mol (4228.8862 without restraints) Performing minimization step: 2345. Total energy = 4240.4985 kcal/mol (4226.9634 without restraints) Performing minimization step: 2346. Total energy = 4238.5728 kcal/mol (4225.0417 without restraints) Performing minimization step: 2347. Total energy = 4236.6498 kcal/mol (4223.1230 without restraints) Performing minimization step: 2348. Total energy = 4234.7287 kcal/mol (4221.2060 without restraints) Performing minimization step: 2349. Total energy = 4232.8096 kcal/mol (4219.2910 without restraints) Performing minimization step: 2350. Total energy = 4230.8930 kcal/mol (4217.3787 without restraints) Performing minimization step: 2351. Total energy = 4228.9781 kcal/mol (4215.4678 without restraints) Performing minimization step: 2352. Total energy = 4227.0654 kcal/mol (4213.5592 without restraints) Performing minimization step: 2353. Total energy = 4225.1543 kcal/mol (4211.6523 without restraints) Performing minimization step: 2354. Total energy = 4223.2454 kcal/mol (4209.7476 without restraints) Performing minimization step: 2355. Total energy = 4221.3386 kcal/mol (4207.8448 without restraints) Performing minimization step: 2356. Total energy = 4219.4340 kcal/mol (4205.9443 without restraints) Performing minimization step: 2357. Total energy = 4217.5312 kcal/mol (4204.0456 without restraints) Performing minimization step: 2358. Total energy = 4215.6300 kcal/mol (4202.1486 without restraints) Performing minimization step: 2359. Total energy = 4213.7305 kcal/mol (4200.2533 without restraints) Performing minimization step: 2360. Total energy = 4211.8334 kcal/mol (4198.3602 without restraints) Performing minimization step: 2361. Total energy = 4209.9384 kcal/mol (4196.4694 without restraints) Performing minimization step: 2362. Total energy = 4208.0454 kcal/mol (4194.5804 without restraints) Performing minimization step: 2363. Total energy = 4206.1546 kcal/mol (4192.6939 without restraints) Performing minimization step: 2364. Total energy = 4204.2659 kcal/mol (4190.8091 without restraints) Performing minimization step: 2365. Total energy = 4202.3793 kcal/mol (4188.9266 without restraints) Performing minimization step: 2366. Total energy = 4200.4945 kcal/mol (4187.0462 without restraints) Performing minimization step: 2367. Total energy = 4198.6114 kcal/mol (4185.1670 without restraints) Performing minimization step: 2368. Total energy = 4196.7308 kcal/mol (4183.2905 without restraints) Performing minimization step: 2369. Total energy = 4194.8517 kcal/mol (4181.4155 without restraints) Performing minimization step: 2370. Total energy = 4192.9742 kcal/mol (4179.5421 without restraints) Performing minimization step: 2371. Total energy = 4191.0989 kcal/mol (4177.6708 without restraints) Performing minimization step: 2372. Total energy = 4189.2257 kcal/mol (4175.8020 without restraints) Performing minimization step: 2373. Total energy = 4187.3546 kcal/mol (4173.9349 without restraints) Performing minimization step: 2374. Total energy = 4185.4856 kcal/mol (4172.0700 without restraints) Performing minimization step: 2375. Total energy = 4183.6185 kcal/mol (4170.2070 without restraints) Performing minimization step: 2376. Total energy = 4181.7534 kcal/mol (4168.3460 without restraints) Performing minimization step: 2377. Total energy = 4179.8901 kcal/mol (4166.4868 without restraints) Performing minimization step: 2378. Total energy = 4178.0288 kcal/mol (4164.6295 without restraints) Performing minimization step: 2379. Total energy = 4176.1691 kcal/mol (4162.7740 without restraints) Performing minimization step: 2380. Total energy = 4174.3116 kcal/mol (4160.9204 without restraints) Performing minimization step: 2381. Total energy = 4172.4560 kcal/mol (4159.0688 without restraints) Performing minimization step: 2382. Total energy = 4170.6022 kcal/mol (4157.2194 without restraints) Performing minimization step: 2383. Total energy = 4168.7506 kcal/mol (4155.3719 without restraints) Performing minimization step: 2384. Total energy = 4166.9015 kcal/mol (4153.5268 without restraints) Performing minimization step: 2385. Total energy = 4165.0537 kcal/mol (4151.6831 without restraints) Performing minimization step: 2386. Total energy = 4163.2080 kcal/mol (4149.8416 without restraints) Performing minimization step: 2387. Total energy = 4161.3642 kcal/mol (4148.0018 without restraints) Performing minimization step: 2388. Total energy = 4159.5224 kcal/mol (4146.1641 without restraints) Performing minimization step: 2389. Total energy = 4157.6822 kcal/mol (4144.3279 without restraints) Performing minimization step: 2390. Total energy = 4155.8438 kcal/mol (4142.4936 without restraints) Performing minimization step: 2391. Total energy = 4154.0077 kcal/mol (4140.6617 without restraints) Performing minimization step: 2392. Total energy = 4152.1733 kcal/mol (4138.8313 without restraints) Performing minimization step: 2393. Total energy = 4150.3410 kcal/mol (4137.0031 without restraints) Performing minimization step: 2394. Total energy = 4148.5106 kcal/mol (4135.1768 without restraints) Performing minimization step: 2395. Total energy = 4146.6820 kcal/mol (4133.3523 without restraints) Performing minimization step: 2396. Total energy = 4144.8556 kcal/mol (4131.5299 without restraints) Performing minimization step: 2397. Total energy = 4143.0312 kcal/mol (4129.7096 without restraints) Performing minimization step: 2398. Total energy = 4141.2086 kcal/mol (4127.8911 without restraints) Performing minimization step: 2399. Total energy = 4139.3882 kcal/mol (4126.0749 without restraints) Performing minimization step: 2400. Total energy = 4137.5694 kcal/mol (4124.2600 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 4135.7524 kcal/mol (4122.4472 without restraints) Performing minimization step: 2402. Total energy = 4133.9375 kcal/mol (4120.6362 without restraints) Performing minimization step: 2403. Total energy = 4132.1242 kcal/mol (4118.8271 without restraints) Performing minimization step: 2404. Total energy = 4130.3131 kcal/mol (4117.0200 without restraints) Performing minimization step: 2405. Total energy = 4128.5033 kcal/mol (4115.2142 without restraints) Performing minimization step: 2406. Total energy = 4126.6957 kcal/mol (4113.4108 without restraints) Performing minimization step: 2407. Total energy = 4124.8900 kcal/mol (4111.6091 without restraints) Performing minimization step: 2408. Total energy = 4123.0862 kcal/mol (4109.8094 without restraints) Performing minimization step: 2409. Total energy = 4121.2843 kcal/mol (4108.0115 without restraints) Performing minimization step: 2410. Total energy = 4119.4842 kcal/mol (4106.2155 without restraints) Performing minimization step: 2411. Total energy = 4117.6860 kcal/mol (4104.4214 without restraints) Performing minimization step: 2412. Total energy = 4115.8895 kcal/mol (4102.6290 without restraints) Performing minimization step: 2413. Total energy = 4114.0951 kcal/mol (4100.8386 without restraints) Performing minimization step: 2414. Total energy = 4112.3025 kcal/mol (4099.0501 without restraints) Performing minimization step: 2415. Total energy = 4110.5119 kcal/mol (4097.2635 without restraints) Performing minimization step: 2416. Total energy = 4108.7231 kcal/mol (4095.4787 without restraints) Performing minimization step: 2417. Total energy = 4106.9363 kcal/mol (4093.6961 without restraints) Performing minimization step: 2418. Total energy = 4105.1516 kcal/mol (4091.9155 without restraints) Performing minimization step: 2419. Total energy = 4103.3685 kcal/mol (4090.1363 without restraints) Performing minimization step: 2420. Total energy = 4101.5871 kcal/mol (4088.3590 without restraints) Performing minimization step: 2421. Total energy = 4099.8074 kcal/mol (4086.5833 without restraints) Performing minimization step: 2422. Total energy = 4098.0305 kcal/mol (4084.8105 without restraints) Performing minimization step: 2423. Total energy = 4096.2549 kcal/mol (4083.0389 without restraints) Performing minimization step: 2424. Total energy = 4094.4811 kcal/mol (4081.2693 without restraints) Performing minimization step: 2425. Total energy = 4092.7090 kcal/mol (4079.5011 without restraints) Performing minimization step: 2426. Total energy = 4090.9387 kcal/mol (4077.7349 without restraints) Performing minimization step: 2427. Total energy = 4089.1706 kcal/mol (4075.9709 without restraints) Performing minimization step: 2428. Total energy = 4087.4042 kcal/mol (4074.2084 without restraints) Performing minimization step: 2429. Total energy = 4085.6394 kcal/mol (4072.4477 without restraints) Performing minimization step: 2430. Total energy = 4083.8775 kcal/mol (4070.6899 without restraints) Performing minimization step: 2431. Total energy = 4082.1165 kcal/mol (4068.9329 without restraints) Performing minimization step: 2432. Total energy = 4080.3575 kcal/mol (4067.1779 without restraints) Performing minimization step: 2433. Total energy = 4078.6001 kcal/mol (4065.4245 without restraints) Performing minimization step: 2434. Total energy = 4076.8446 kcal/mol (4063.6731 without restraints) Performing minimization step: 2435. Total energy = 4075.0913 kcal/mol (4061.9238 without restraints) Performing minimization step: 2436. Total energy = 4073.3399 kcal/mol (4060.1765 without restraints) Performing minimization step: 2437. Total energy = 4071.5901 kcal/mol (4058.4307 without restraints) Performing minimization step: 2438. Total energy = 4069.8422 kcal/mol (4056.6868 without restraints) Performing minimization step: 2439. Total energy = 4068.0957 kcal/mol (4054.9443 without restraints) Performing minimization step: 2440. Total energy = 4066.3508 kcal/mol (4053.2034 without restraints) Performing minimization step: 2441. Total energy = 4064.6088 kcal/mol (4051.4656 without restraints) Performing minimization step: 2442. Total energy = 4062.8679 kcal/mol (4049.7286 without restraints) Performing minimization step: 2443. Total energy = 4061.1286 kcal/mol (4047.9934 without restraints) Performing minimization step: 2444. Total energy = 4059.3911 kcal/mol (4046.2599 without restraints) Performing minimization step: 2445. Total energy = 4057.6555 kcal/mol (4044.5283 without restraints) Performing minimization step: 2446. Total energy = 4055.9217 kcal/mol (4042.7986 without restraints) Performing minimization step: 2447. Total energy = 4054.1899 kcal/mol (4041.0707 without restraints) Performing minimization step: 2448. Total energy = 4052.4595 kcal/mol (4039.3444 without restraints) Performing minimization step: 2449. Total energy = 4050.7308 kcal/mol (4037.6197 without restraints) Performing minimization step: 2450. Total energy = 4049.0042 kcal/mol (4035.8970 without restraints) Performing minimization step: 2451. Total energy = 4047.2793 kcal/mol (4034.1762 without restraints) Performing minimization step: 2452. Total energy = 4045.5562 kcal/mol (4032.4570 without restraints) Performing minimization step: 2453. Total energy = 4043.8348 kcal/mol (4030.7397 without restraints) Performing minimization step: 2454. Total energy = 4042.1151 kcal/mol (4029.0240 without restraints) Performing minimization step: 2455. Total energy = 4040.3974 kcal/mol (4027.3104 without restraints) Performing minimization step: 2456. Total energy = 4038.6818 kcal/mol (4025.5988 without restraints) Performing minimization step: 2457. Total energy = 4036.9678 kcal/mol (4023.8888 without restraints) Performing minimization step: 2458. Total energy = 4035.2559 kcal/mol (4022.1810 without restraints) Performing minimization step: 2459. Total energy = 4033.5454 kcal/mol (4020.4743 without restraints) Performing minimization step: 2460. Total energy = 4031.8364 kcal/mol (4018.7693 without restraints) Performing minimization step: 2461. Total energy = 4030.1291 kcal/mol (4017.0662 without restraints) Performing minimization step: 2462. Total energy = 4028.4237 kcal/mol (4015.3645 without restraints) Performing minimization step: 2463. Total energy = 4026.7201 kcal/mol (4013.6651 without restraints) Performing minimization step: 2464. Total energy = 4025.0189 kcal/mol (4011.9678 without restraints) Performing minimization step: 2465. Total energy = 4023.3182 kcal/mol (4010.2711 without restraints) Performing minimization step: 2466. Total energy = 4021.6200 kcal/mol (4008.5768 without restraints) Performing minimization step: 2467. Total energy = 4019.9230 kcal/mol (4006.8840 without restraints) Performing minimization step: 2468. Total energy = 4018.2288 kcal/mol (4005.1937 without restraints) Performing minimization step: 2469. Total energy = 4016.5357 kcal/mol (4003.5046 without restraints) Performing minimization step: 2470. Total energy = 4014.8444 kcal/mol (4001.8174 without restraints) Performing minimization step: 2471. Total energy = 4013.1550 kcal/mol (4000.1320 without restraints) Performing minimization step: 2472. Total energy = 4011.4670 kcal/mol (3998.4479 without restraints) Performing minimization step: 2473. Total energy = 4009.7809 kcal/mol (3996.7658 without restraints) Performing minimization step: 2474. Total energy = 4008.0966 kcal/mol (3995.0855 without restraints) Performing minimization step: 2475. Total energy = 4006.4135 kcal/mol (3993.4064 without restraints) Performing minimization step: 2476. Total energy = 4004.7326 kcal/mol (3991.7294 without restraints) Performing minimization step: 2477. Total energy = 4003.0534 kcal/mol (3990.0542 without restraints) Performing minimization step: 2478. Total energy = 4001.3758 kcal/mol (3988.3807 without restraints) Performing minimization step: 2479. Total energy = 3999.7003 kcal/mol (3986.7091 without restraints) Performing minimization step: 2480. Total energy = 3998.0261 kcal/mol (3985.0388 without restraints) Performing minimization step: 2481. Total energy = 3996.3539 kcal/mol (3983.3707 without restraints) Performing minimization step: 2482. Total energy = 3994.6834 kcal/mol (3981.7040 without restraints) Performing minimization step: 2483. Total energy = 3993.0144 kcal/mol (3980.0391 without restraints) Performing minimization step: 2484. Total energy = 3991.3476 kcal/mol (3978.3763 without restraints) Performing minimization step: 2485. Total energy = 3989.6824 kcal/mol (3976.7152 without restraints) Performing minimization step: 2486. Total energy = 3988.0188 kcal/mol (3975.0555 without restraints) Performing minimization step: 2487. Total energy = 3986.3566 kcal/mol (3973.3972 without restraints) Performing minimization step: 2488. Total energy = 3984.6961 kcal/mol (3971.7406 without restraints) Performing minimization step: 2489. Total energy = 3983.0375 kcal/mol (3970.0861 without restraints) Performing minimization step: 2490. Total energy = 3981.3807 kcal/mol (3968.4332 without restraints) Performing minimization step: 2491. Total energy = 3979.7252 kcal/mol (3966.7816 without restraints) Performing minimization step: 2492. Total energy = 3978.0715 kcal/mol (3965.1320 without restraints) Performing minimization step: 2493. Total energy = 3976.4199 kcal/mol (3963.4843 without restraints) Performing minimization step: 2494. Total energy = 3974.7698 kcal/mol (3961.8383 without restraints) Performing minimization step: 2495. Total energy = 3973.1218 kcal/mol (3960.1941 without restraints) Performing minimization step: 2496. Total energy = 3971.4748 kcal/mol (3958.5512 without restraints) Performing minimization step: 2497. Total energy = 3969.8301 kcal/mol (3956.9104 without restraints) Performing minimization step: 2498. Total energy = 3968.1867 kcal/mol (3955.2709 without restraints) Performing minimization step: 2499. Total energy = 3966.5449 kcal/mol (3953.6331 without restraints) Performing minimization step: 2500. Total energy = 3964.9049 kcal/mol (3951.9970 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 3963.2667 kcal/mol (3950.3628 without restraints) Performing minimization step: 2502. Total energy = 3961.6300 kcal/mol (3948.7300 without restraints) Performing minimization step: 2503. Total energy = 3959.9951 kcal/mol (3947.0991 without restraints) Performing minimization step: 2504. Total energy = 3958.3618 kcal/mol (3945.4698 without restraints) Performing minimization step: 2505. Total energy = 3956.7303 kcal/mol (3943.8422 without restraints) Performing minimization step: 2506. Total energy = 3955.1003 kcal/mol (3942.2162 without restraints) Performing minimization step: 2507. Total energy = 3953.4723 kcal/mol (3940.5920 without restraints) Performing minimization step: 2508. Total energy = 3951.8457 kcal/mol (3938.9695 without restraints) Performing minimization step: 2509. Total energy = 3950.2207 kcal/mol (3937.3484 without restraints) Performing minimization step: 2510. Total energy = 3948.5971 kcal/mol (3935.7287 without restraints) Performing minimization step: 2511. Total energy = 3946.9754 kcal/mol (3934.1110 without restraints) Performing minimization step: 2512. Total energy = 3945.3556 kcal/mol (3932.4951 without restraints) Performing minimization step: 2513. Total energy = 3943.7370 kcal/mol (3930.8805 without restraints) Performing minimization step: 2514. Total energy = 3942.1201 kcal/mol (3929.2675 without restraints) Performing minimization step: 2515. Total energy = 3940.5052 kcal/mol (3927.6565 without restraints) Performing minimization step: 2516. Total energy = 3938.8919 kcal/mol (3926.0471 without restraints) Performing minimization step: 2517. Total energy = 3937.2805 kcal/mol (3924.4399 without restraints) Performing minimization step: 2518. Total energy = 3935.6703 kcal/mol (3922.8331 without restraints) Performing minimization step: 2519. Total energy = 3934.0613 kcal/mol (3921.2283 without restraints) Performing minimization step: 2520. Total energy = 3932.4542 kcal/mol (3919.6252 without restraints) Performing minimization step: 2521. Total energy = 3930.8488 kcal/mol (3918.0236 without restraints) Performing minimization step: 2522. Total energy = 3929.2453 kcal/mol (3916.4241 without restraints) Performing minimization step: 2523. Total energy = 3927.6433 kcal/mol (3914.8260 without restraints) Performing minimization step: 2524. Total energy = 3926.0429 kcal/mol (3913.2296 without restraints) Performing minimization step: 2525. Total energy = 3924.4441 kcal/mol (3911.6348 without restraints) Performing minimization step: 2526. Total energy = 3922.8471 kcal/mol (3910.0418 without restraints) Performing minimization step: 2527. Total energy = 3921.2516 kcal/mol (3908.4501 without restraints) Performing minimization step: 2528. Total energy = 3919.6577 kcal/mol (3906.8602 without restraints) Performing minimization step: 2529. Total energy = 3918.0663 kcal/mol (3905.2726 without restraints) Performing minimization step: 2530. Total energy = 3916.4754 kcal/mol (3903.6856 without restraints) Performing minimization step: 2531. Total energy = 3914.8864 kcal/mol (3902.1005 without restraints) Performing minimization step: 2532. Total energy = 3913.2994 kcal/mol (3900.5174 without restraints) Performing minimization step: 2533. Total energy = 3911.7138 kcal/mol (3898.9358 without restraints) Performing minimization step: 2534. Total energy = 3910.1295 kcal/mol (3897.3553 without restraints) Performing minimization step: 2535. Total energy = 3908.5467 kcal/mol (3895.7766 without restraints) Performing minimization step: 2536. Total energy = 3906.9662 kcal/mol (3894.1999 without restraints) Performing minimization step: 2537. Total energy = 3905.3867 kcal/mol (3892.6244 without restraints) Performing minimization step: 2538. Total energy = 3903.8090 kcal/mol (3891.0506 without restraints) Performing minimization step: 2539. Total energy = 3902.2329 kcal/mol (3889.4783 without restraints) Performing minimization step: 2540. Total energy = 3900.6582 kcal/mol (3887.9076 without restraints) Performing minimization step: 2541. Total energy = 3899.0853 kcal/mol (3886.3385 without restraints) Performing minimization step: 2542. Total energy = 3897.5142 kcal/mol (3884.7713 without restraints) Performing minimization step: 2543. Total energy = 3895.9447 kcal/mol (3883.2058 without restraints) Performing minimization step: 2544. Total energy = 3894.3768 kcal/mol (3881.6420 without restraints) Performing minimization step: 2545. Total energy = 3892.8103 kcal/mol (3880.0792 without restraints) Performing minimization step: 2546. Total energy = 3891.2451 kcal/mol (3878.5179 without restraints) Performing minimization step: 2547. Total energy = 3889.6819 kcal/mol (3876.9586 without restraints) Performing minimization step: 2548. Total energy = 3888.1201 kcal/mol (3875.4008 without restraints) Performing minimization step: 2549. Total energy = 3886.5602 kcal/mol (3873.8447 without restraints) Performing minimization step: 2550. Total energy = 3885.0016 kcal/mol (3872.2900 without restraints) Performing minimization step: 2551. Total energy = 3883.4445 kcal/mol (3870.7366 without restraints) Performing minimization step: 2552. Total energy = 3881.8879 kcal/mol (3869.1841 without restraints) Performing minimization step: 2553. Total energy = 3880.3339 kcal/mol (3867.6339 without restraints) Performing minimization step: 2554. Total energy = 3878.7814 kcal/mol (3866.0853 without restraints) Performing minimization step: 2555. Total energy = 3877.2304 kcal/mol (3864.5382 without restraints) Performing minimization step: 2556. Total energy = 3875.6813 kcal/mol (3862.9930 without restraints) Performing minimization step: 2557. Total energy = 3874.1340 kcal/mol (3861.4498 without restraints) Performing minimization step: 2558. Total energy = 3872.5879 kcal/mol (3859.9074 without restraints) Performing minimization step: 2559. Total energy = 3871.0434 kcal/mol (3858.3668 without restraints) Performing minimization step: 2560. Total energy = 3869.5005 kcal/mol (3856.8278 without restraints) Performing minimization step: 2561. Total energy = 3867.9589 kcal/mol (3855.2901 without restraints) Performing minimization step: 2562. Total energy = 3866.4194 kcal/mol (3853.7544 without restraints) Performing minimization step: 2563. Total energy = 3864.8809 kcal/mol (3852.2196 without restraints) Performing minimization step: 2564. Total energy = 3863.3441 kcal/mol (3850.6870 without restraints) Performing minimization step: 2565. Total energy = 3861.8088 kcal/mol (3849.1555 without restraints) Performing minimization step: 2566. Total energy = 3860.2753 kcal/mol (3847.6259 without restraints) Performing minimization step: 2567. Total energy = 3858.7433 kcal/mol (3846.0978 without restraints) Performing minimization step: 2568. Total energy = 3857.2126 kcal/mol (3844.5709 without restraints) Performing minimization step: 2569. Total energy = 3855.6835 kcal/mol (3843.0456 without restraints) Performing minimization step: 2570. Total energy = 3854.1560 kcal/mol (3841.5220 without restraints) Performing minimization step: 2571. Total energy = 3852.6297 kcal/mol (3839.9997 without restraints) Performing minimization step: 2572. Total energy = 3851.1052 kcal/mol (3838.4789 without restraints) Performing minimization step: 2573. Total energy = 3849.5823 kcal/mol (3836.9600 without restraints) Performing minimization step: 2574. Total energy = 3848.0609 kcal/mol (3835.4424 without restraints) Performing minimization step: 2575. Total energy = 3846.5409 kcal/mol (3833.9262 without restraints) Performing minimization step: 2576. Total energy = 3845.0225 kcal/mol (3832.4116 without restraints) Performing minimization step: 2577. Total energy = 3843.5056 kcal/mol (3830.8988 without restraints) Performing minimization step: 2578. Total energy = 3841.9903 kcal/mol (3829.3872 without restraints) Performing minimization step: 2579. Total energy = 3840.4763 kcal/mol (3827.8771 without restraints) Performing minimization step: 2580. Total energy = 3838.9641 kcal/mol (3826.3688 without restraints) Performing minimization step: 2581. Total energy = 3837.4532 kcal/mol (3824.8617 without restraints) Performing minimization step: 2582. Total energy = 3835.9440 kcal/mol (3823.3563 without restraints) Performing minimization step: 2583. Total energy = 3834.4363 kcal/mol (3821.8526 without restraints) Performing minimization step: 2584. Total energy = 3832.9301 kcal/mol (3820.3502 without restraints) Performing minimization step: 2585. Total energy = 3831.4253 kcal/mol (3818.8492 without restraints) Performing minimization step: 2586. Total energy = 3829.9223 kcal/mol (3817.3502 without restraints) Performing minimization step: 2587. Total energy = 3828.4206 kcal/mol (3815.8522 without restraints) Performing minimization step: 2588. Total energy = 3826.9203 kcal/mol (3814.3557 without restraints) Performing minimization step: 2589. Total energy = 3825.4215 kcal/mol (3812.8610 without restraints) Performing minimization step: 2590. Total energy = 3823.9245 kcal/mol (3811.3677 without restraints) Performing minimization step: 2591. Total energy = 3822.4286 kcal/mol (3809.8756 without restraints) Performing minimization step: 2592. Total energy = 3820.9345 kcal/mol (3808.3854 without restraints) Performing minimization step: 2593. Total energy = 3819.4417 kcal/mol (3806.8964 without restraints) Performing minimization step: 2594. Total energy = 3817.9501 kcal/mol (3805.4086 without restraints) Performing minimization step: 2595. Total energy = 3816.4604 kcal/mol (3803.9228 without restraints) Performing minimization step: 2596. Total energy = 3814.9725 kcal/mol (3802.4388 without restraints) Performing minimization step: 2597. Total energy = 3813.4861 kcal/mol (3800.9562 without restraints) Performing minimization step: 2598. Total energy = 3812.0010 kcal/mol (3799.4748 without restraints) Performing minimization step: 2599. Total energy = 3810.5173 kcal/mol (3797.9950 without restraints) Performing minimization step: 2600. Total energy = 3809.0344 kcal/mol (3796.5160 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 3807.5533 kcal/mol (3795.0387 without restraints) Performing minimization step: 2602. Total energy = 3806.0740 kcal/mol (3793.5633 without restraints) Performing minimization step: 2603. Total energy = 3804.5963 kcal/mol (3792.0894 without restraints) Performing minimization step: 2604. Total energy = 3803.1199 kcal/mol (3790.6169 without restraints) Performing minimization step: 2605. Total energy = 3801.6449 kcal/mol (3789.1456 without restraints) Performing minimization step: 2606. Total energy = 3800.1717 kcal/mol (3787.6763 without restraints) Performing minimization step: 2607. Total energy = 3798.6996 kcal/mol (3786.2080 without restraints) Performing minimization step: 2608. Total energy = 3797.2291 kcal/mol (3784.7413 without restraints) Performing minimization step: 2609. Total energy = 3795.7600 kcal/mol (3783.2761 without restraints) Performing minimization step: 2610. Total energy = 3794.2924 kcal/mol (3781.8123 without restraints) Performing minimization step: 2611. Total energy = 3792.8260 kcal/mol (3780.3497 without restraints) Performing minimization step: 2612. Total energy = 3791.3613 kcal/mol (3778.8888 without restraints) Performing minimization step: 2613. Total energy = 3789.8982 kcal/mol (3777.4297 without restraints) Performing minimization step: 2614. Total energy = 3788.4365 kcal/mol (3775.9716 without restraints) Performing minimization step: 2615. Total energy = 3786.9761 kcal/mol (3774.5151 without restraints) Performing minimization step: 2616. Total energy = 3785.5171 kcal/mol (3773.0598 without restraints) Performing minimization step: 2617. Total energy = 3784.0596 kcal/mol (3771.6062 without restraints) Performing minimization step: 2618. Total energy = 3782.6032 kcal/mol (3770.1535 without restraints) Performing minimization step: 2619. Total energy = 3781.1489 kcal/mol (3768.7031 without restraints) Performing minimization step: 2620. Total energy = 3779.6957 kcal/mol (3767.2537 without restraints) Performing minimization step: 2621. Total energy = 3778.2442 kcal/mol (3765.8060 without restraints) Performing minimization step: 2622. Total energy = 3776.7939 kcal/mol (3764.3595 without restraints) Performing minimization step: 2623. Total energy = 3775.3450 kcal/mol (3762.9144 without restraints) Performing minimization step: 2624. Total energy = 3773.8976 kcal/mol (3761.4710 without restraints) Performing minimization step: 2625. Total energy = 3772.4519 kcal/mol (3760.0290 without restraints) Performing minimization step: 2626. Total energy = 3771.0077 kcal/mol (3758.5885 without restraints) Performing minimization step: 2627. Total energy = 3769.5648 kcal/mol (3757.1494 without restraints) Performing minimization step: 2628. Total energy = 3768.1231 kcal/mol (3755.7115 without restraints) Performing minimization step: 2629. Total energy = 3766.6830 kcal/mol (3754.2753 without restraints) Performing minimization step: 2630. Total energy = 3765.2442 kcal/mol (3752.8402 without restraints) Performing minimization step: 2631. Total energy = 3763.8068 kcal/mol (3751.4067 without restraints) Performing minimization step: 2632. Total energy = 3762.3708 kcal/mol (3749.9745 without restraints) Performing minimization step: 2633. Total energy = 3760.9362 kcal/mol (3748.5437 without restraints) Performing minimization step: 2634. Total energy = 3759.5031 kcal/mol (3747.1143 without restraints) Performing minimization step: 2635. Total energy = 3758.0716 kcal/mol (3745.6867 without restraints) Performing minimization step: 2636. Total energy = 3756.6418 kcal/mol (3744.2607 without restraints) Performing minimization step: 2637. Total energy = 3755.2128 kcal/mol (3742.8352 without restraints) Performing minimization step: 2638. Total energy = 3753.7852 kcal/mol (3741.4115 without restraints) Performing minimization step: 2639. Total energy = 3752.3593 kcal/mol (3739.9895 without restraints) Performing minimization step: 2640. Total energy = 3750.9342 kcal/mol (3738.5681 without restraints) Performing minimization step: 2641. Total energy = 3749.5109 kcal/mol (3737.1487 without restraints) Performing minimization step: 2642. Total energy = 3748.0890 kcal/mol (3735.7305 without restraints) Performing minimization step: 2643. Total energy = 3746.6685 kcal/mol (3734.3138 without restraints) Performing minimization step: 2644. Total energy = 3745.2498 kcal/mol (3732.8989 without restraints) Performing minimization step: 2645. Total energy = 3743.8322 kcal/mol (3731.4851 without restraints) Performing minimization step: 2646. Total energy = 3742.4162 kcal/mol (3730.0729 without restraints) Performing minimization step: 2647. Total energy = 3741.0017 kcal/mol (3728.6621 without restraints) Performing minimization step: 2648. Total energy = 3739.5884 kcal/mol (3727.2526 without restraints) Performing minimization step: 2649. Total energy = 3738.1764 kcal/mol (3725.8443 without restraints) Performing minimization step: 2650. Total energy = 3736.7657 kcal/mol (3724.4374 without restraints) Performing minimization step: 2651. Total energy = 3735.3566 kcal/mol (3723.0321 without restraints) Performing minimization step: 2652. Total energy = 3733.9487 kcal/mol (3721.6280 without restraints) Performing minimization step: 2653. Total energy = 3732.5423 kcal/mol (3720.2255 without restraints) Performing minimization step: 2654. Total energy = 3731.1372 kcal/mol (3718.8241 without restraints) Performing minimization step: 2655. Total energy = 3729.7335 kcal/mol (3717.4241 without restraints) Performing minimization step: 2656. Total energy = 3728.3311 kcal/mol (3716.0254 without restraints) Performing minimization step: 2657. Total energy = 3726.9300 kcal/mol (3714.6282 without restraints) Performing minimization step: 2658. Total energy = 3725.5311 kcal/mol (3713.2330 without restraints) Performing minimization step: 2659. Total energy = 3724.1332 kcal/mol (3711.8388 without restraints) Performing minimization step: 2660. Total energy = 3722.7369 kcal/mol (3710.4466 without restraints) Performing minimization step: 2661. Total energy = 3721.3419 kcal/mol (3709.0551 without restraints) Performing minimization step: 2662. Total energy = 3719.9480 kcal/mol (3707.6652 without restraints) Performing minimization step: 2663. Total energy = 3718.5555 kcal/mol (3706.2762 without restraints) Performing minimization step: 2664. Total energy = 3717.1641 kcal/mol (3704.8885 without restraints) Performing minimization step: 2665. Total energy = 3715.7745 kcal/mol (3703.5027 without restraints) Performing minimization step: 2666. Total energy = 3714.3859 kcal/mol (3702.1179 without restraints) Performing minimization step: 2667. Total energy = 3712.9986 kcal/mol (3700.7344 without restraints) Performing minimization step: 2668. Total energy = 3711.6123 kcal/mol (3699.3518 without restraints) Performing minimization step: 2669. Total energy = 3710.2277 kcal/mol (3697.9710 without restraints) Performing minimization step: 2670. Total energy = 3708.8445 kcal/mol (3696.5914 without restraints) Performing minimization step: 2671. Total energy = 3707.4623 kcal/mol (3695.2131 without restraints) Performing minimization step: 2672. Total energy = 3706.0818 kcal/mol (3693.8363 without restraints) Performing minimization step: 2673. Total energy = 3704.7027 kcal/mol (3692.4609 without restraints) Performing minimization step: 2674. Total energy = 3703.3249 kcal/mol (3691.0868 without restraints) Performing minimization step: 2675. Total energy = 3701.9480 kcal/mol (3689.7137 without restraints) Performing minimization step: 2676. Total energy = 3700.5726 kcal/mol (3688.3420 without restraints) Performing minimization step: 2677. Total energy = 3699.1988 kcal/mol (3686.9721 without restraints) Performing minimization step: 2678. Total energy = 3697.8263 kcal/mol (3685.6032 without restraints) Performing minimization step: 2679. Total energy = 3696.4553 kcal/mol (3684.2361 without restraints) Performing minimization step: 2680. Total energy = 3695.0856 kcal/mol (3682.8700 without restraints) Performing minimization step: 2681. Total energy = 3693.7172 kcal/mol (3681.5053 without restraints) Performing minimization step: 2682. Total energy = 3692.3501 kcal/mol (3680.1420 without restraints) Performing minimization step: 2683. Total energy = 3690.9845 kcal/mol (3678.7802 without restraints) Performing minimization step: 2684. Total energy = 3689.6201 kcal/mol (3677.4195 without restraints) Performing minimization step: 2685. Total energy = 3688.2571 kcal/mol (3676.0601 without restraints) Performing minimization step: 2686. Total energy = 3686.8961 kcal/mol (3674.7029 without restraints) Performing minimization step: 2687. Total energy = 3685.5359 kcal/mol (3673.3464 without restraints) Performing minimization step: 2688. Total energy = 3684.1769 kcal/mol (3671.9912 without restraints) Performing minimization step: 2689. Total energy = 3682.8193 kcal/mol (3670.6374 without restraints) Performing minimization step: 2690. Total energy = 3681.4630 kcal/mol (3669.2847 without restraints) Performing minimization step: 2691. Total energy = 3680.1077 kcal/mol (3667.9331 without restraints) Performing minimization step: 2692. Total energy = 3678.7540 kcal/mol (3666.5831 without restraints) Performing minimization step: 2693. Total energy = 3677.4022 kcal/mol (3665.2351 without restraints) Performing minimization step: 2694. Total energy = 3676.0511 kcal/mol (3663.8877 without restraints) Performing minimization step: 2695. Total energy = 3674.7018 kcal/mol (3662.5421 without restraints) Performing minimization step: 2696. Total energy = 3673.3531 kcal/mol (3661.1972 without restraints) Performing minimization step: 2697. Total energy = 3672.0064 kcal/mol (3659.8544 without restraints) Performing minimization step: 2698. Total energy = 3670.6608 kcal/mol (3658.5122 without restraints) Performing minimization step: 2699. Total energy = 3669.3164 kcal/mol (3657.1716 without restraints) Performing minimization step: 2700. Total energy = 3667.9735 kcal/mol (3655.8324 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 3666.6315 kcal/mol (3654.4941 without restraints) Performing minimization step: 2702. Total energy = 3665.2907 kcal/mol (3653.1570 without restraints) Performing minimization step: 2703. Total energy = 3663.9518 kcal/mol (3651.8219 without restraints) Performing minimization step: 2704. Total energy = 3662.6140 kcal/mol (3650.4879 without restraints) Performing minimization step: 2705. Total energy = 3661.2774 kcal/mol (3649.1548 without restraints) Performing minimization step: 2706. Total energy = 3659.9421 kcal/mol (3647.8233 without restraints) Performing minimization step: 2707. Total energy = 3658.6083 kcal/mol (3646.4932 without restraints) Performing minimization step: 2708. Total energy = 3657.2752 kcal/mol (3645.1637 without restraints) Performing minimization step: 2709. Total energy = 3655.9438 kcal/mol (3643.8361 without restraints) Performing minimization step: 2710. Total energy = 3654.6135 kcal/mol (3642.5095 without restraints) Performing minimization step: 2711. Total energy = 3653.2848 kcal/mol (3641.1845 without restraints) Performing minimization step: 2712. Total energy = 3651.9572 kcal/mol (3639.8606 without restraints) Performing minimization step: 2713. Total energy = 3650.6313 kcal/mol (3638.5384 without restraints) Performing minimization step: 2714. Total energy = 3649.3061 kcal/mol (3637.2168 without restraints) Performing minimization step: 2715. Total energy = 3647.9821 kcal/mol (3635.8965 without restraints) Performing minimization step: 2716. Total energy = 3646.6594 kcal/mol (3634.5777 without restraints) Performing minimization step: 2717. Total energy = 3645.3384 kcal/mol (3633.2602 without restraints) Performing minimization step: 2718. Total energy = 3644.0182 kcal/mol (3631.9437 without restraints) Performing minimization step: 2719. Total energy = 3642.6995 kcal/mol (3630.6288 without restraints) Performing minimization step: 2720. Total energy = 3641.3819 kcal/mol (3629.3149 without restraints) Performing minimization step: 2721. Total energy = 3640.0660 kcal/mol (3628.0027 without restraints) Performing minimization step: 2722. Total energy = 3638.7518 kcal/mol (3626.6921 without restraints) Performing minimization step: 2723. Total energy = 3637.4381 kcal/mol (3625.3820 without restraints) Performing minimization step: 2724. Total energy = 3636.1262 kcal/mol (3624.0739 without restraints) Performing minimization step: 2725. Total energy = 3634.8153 kcal/mol (3622.7667 without restraints) Performing minimization step: 2726. Total energy = 3633.5056 kcal/mol (3621.4606 without restraints) Performing minimization step: 2727. Total energy = 3632.1968 kcal/mol (3620.1554 without restraints) Performing minimization step: 2728. Total energy = 3630.8893 kcal/mol (3618.8517 without restraints) Performing minimization step: 2729. Total energy = 3629.5838 kcal/mol (3617.5499 without restraints) Performing minimization step: 2730. Total energy = 3628.2791 kcal/mol (3616.2488 without restraints) Performing minimization step: 2731. Total energy = 3626.9757 kcal/mol (3614.9491 without restraints) Performing minimization step: 2732. Total energy = 3625.6737 kcal/mol (3613.6508 without restraints) Performing minimization step: 2733. Total energy = 3624.3730 kcal/mol (3612.3538 without restraints) Performing minimization step: 2734. Total energy = 3623.0730 kcal/mol (3611.0574 without restraints) Performing minimization step: 2735. Total energy = 3621.7750 kcal/mol (3609.7631 without restraints) Performing minimization step: 2736. Total energy = 3620.4776 kcal/mol (3608.4694 without restraints) Performing minimization step: 2737. Total energy = 3619.1818 kcal/mol (3607.1772 without restraints) Performing minimization step: 2738. Total energy = 3617.8876 kcal/mol (3605.8867 without restraints) Performing minimization step: 2739. Total energy = 3616.5942 kcal/mol (3604.5970 without restraints) Performing minimization step: 2740. Total energy = 3615.3023 kcal/mol (3603.3088 without restraints) Performing minimization step: 2741. Total energy = 3614.0114 kcal/mol (3602.0216 without restraints) Performing minimization step: 2742. Total energy = 3612.7216 kcal/mol (3600.7354 without restraints) Performing minimization step: 2743. Total energy = 3611.4330 kcal/mol (3599.4505 without restraints) Performing minimization step: 2744. Total energy = 3610.1462 kcal/mol (3598.1673 without restraints) Performing minimization step: 2745. Total energy = 3608.8603 kcal/mol (3596.8851 without restraints) Performing minimization step: 2746. Total energy = 3607.5760 kcal/mol (3595.6045 without restraints) Performing minimization step: 2747. Total energy = 3606.2926 kcal/mol (3594.3247 without restraints) Performing minimization step: 2748. Total energy = 3605.0107 kcal/mol (3593.0466 without restraints) Performing minimization step: 2749. Total energy = 3603.7298 kcal/mol (3591.7692 without restraints) Performing minimization step: 2750. Total energy = 3602.4503 kcal/mol (3590.4935 without restraints) Performing minimization step: 2751. Total energy = 3601.1720 kcal/mol (3589.2187 without restraints) Performing minimization step: 2752. Total energy = 3599.8949 kcal/mol (3587.9453 without restraints) Performing minimization step: 2753. Total energy = 3598.6183 kcal/mol (3586.6724 without restraints) Performing minimization step: 2754. Total energy = 3597.3437 kcal/mol (3585.4015 without restraints) Performing minimization step: 2755. Total energy = 3596.0699 kcal/mol (3584.1312 without restraints) Performing minimization step: 2756. Total energy = 3594.7976 kcal/mol (3582.8626 without restraints) Performing minimization step: 2757. Total energy = 3593.5267 kcal/mol (3581.5953 without restraints) Performing minimization step: 2758. Total energy = 3592.2572 kcal/mol (3580.3295 without restraints) Performing minimization step: 2759. Total energy = 3590.9888 kcal/mol (3579.0648 without restraints) Performing minimization step: 2760. Total energy = 3589.7215 kcal/mol (3577.8011 without restraints) Performing minimization step: 2761. Total energy = 3588.4553 kcal/mol (3576.5385 without restraints) Performing minimization step: 2762. Total energy = 3587.1908 kcal/mol (3575.2778 without restraints) Performing minimization step: 2763. Total energy = 3585.9273 kcal/mol (3574.0178 without restraints) Performing minimization step: 2764. Total energy = 3584.6651 kcal/mol (3572.7592 without restraints) Performing minimization step: 2765. Total energy = 3583.4036 kcal/mol (3571.5014 without restraints) Performing minimization step: 2766. Total energy = 3582.1434 kcal/mol (3570.2450 without restraints) Performing minimization step: 2767. Total energy = 3580.8848 kcal/mol (3568.9898 without restraints) Performing minimization step: 2768. Total energy = 3579.6270 kcal/mol (3567.7356 without restraints) Performing minimization step: 2769. Total energy = 3578.3705 kcal/mol (3566.4828 without restraints) Performing minimization step: 2770. Total energy = 3577.1156 kcal/mol (3565.2315 without restraints) Performing minimization step: 2771. Total energy = 3575.8620 kcal/mol (3563.9817 without restraints) Performing minimization step: 2772. Total energy = 3574.6097 kcal/mol (3562.7330 without restraints) Performing minimization step: 2773. Total energy = 3573.3576 kcal/mol (3561.4844 without restraints) Performing minimization step: 2774. Total energy = 3572.1072 kcal/mol (3560.2376 without restraints) Performing minimization step: 2775. Total energy = 3570.8579 kcal/mol (3558.9919 without restraints) Performing minimization step: 2776. Total energy = 3569.6097 kcal/mol (3557.7474 without restraints) Performing minimization step: 2777. Total energy = 3568.3636 kcal/mol (3556.5049 without restraints) Performing minimization step: 2778. Total energy = 3567.1179 kcal/mol (3555.2630 without restraints) Performing minimization step: 2779. Total energy = 3565.8734 kcal/mol (3554.0220 without restraints) Performing minimization step: 2780. Total energy = 3564.6301 kcal/mol (3552.7823 without restraints) Performing minimization step: 2781. Total energy = 3563.3878 kcal/mol (3551.5435 without restraints) Performing minimization step: 2782. Total energy = 3562.1469 kcal/mol (3550.3063 without restraints) Performing minimization step: 2783. Total energy = 3560.9071 kcal/mol (3549.0700 without restraints) Performing minimization step: 2784. Total energy = 3559.6688 kcal/mol (3547.8356 without restraints) Performing minimization step: 2785. Total energy = 3558.4315 kcal/mol (3546.6018 without restraints) Performing minimization step: 2786. Total energy = 3557.1955 kcal/mol (3545.3694 without restraints) Performing minimization step: 2787. Total energy = 3555.9608 kcal/mol (3544.1383 without restraints) Performing minimization step: 2788. Total energy = 3554.7270 kcal/mol (3542.9081 without restraints) Performing minimization step: 2789. Total energy = 3553.4940 kcal/mol (3541.6788 without restraints) Performing minimization step: 2790. Total energy = 3552.2626 kcal/mol (3540.4508 without restraints) Performing minimization step: 2791. Total energy = 3551.0324 kcal/mol (3539.2244 without restraints) Performing minimization step: 2792. Total energy = 3549.8033 kcal/mol (3537.9989 without restraints) Performing minimization step: 2793. Total energy = 3548.5757 kcal/mol (3536.7749 without restraints) Performing minimization step: 2794. Total energy = 3547.3488 kcal/mol (3535.5516 without restraints) Performing minimization step: 2795. Total energy = 3546.1230 kcal/mol (3534.3293 without restraints) Performing minimization step: 2796. Total energy = 3544.8984 kcal/mol (3533.1080 without restraints) Performing minimization step: 2797. Total energy = 3543.6749 kcal/mol (3531.8884 without restraints) Performing minimization step: 2798. Total energy = 3542.4528 kcal/mol (3530.6699 without restraints) Performing minimization step: 2799. Total energy = 3541.2320 kcal/mol (3529.4528 without restraints) Performing minimization step: 2800. Total energy = 3540.0122 kcal/mol (3528.2366 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 3538.7936 kcal/mol (3527.0215 without restraints) Performing minimization step: 2802. Total energy = 3537.5763 kcal/mol (3525.8078 without restraints) Performing minimization step: 2803. Total energy = 3536.3603 kcal/mol (3524.5956 without restraints) Performing minimization step: 2804. Total energy = 3535.1456 kcal/mol (3523.3844 without restraints) Performing minimization step: 2805. Total energy = 3533.9314 kcal/mol (3522.1735 without restraints) Performing minimization step: 2806. Total energy = 3532.7182 kcal/mol (3520.9641 without restraints) Performing minimization step: 2807. Total energy = 3531.5068 kcal/mol (3519.7563 without restraints) Performing minimization step: 2808. Total energy = 3530.2965 kcal/mol (3518.5495 without restraints) Performing minimization step: 2809. Total energy = 3529.0874 kcal/mol (3517.3444 without restraints) Performing minimization step: 2810. Total energy = 3527.8800 kcal/mol (3516.1404 without restraints) Performing minimization step: 2811. Total energy = 3526.6730 kcal/mol (3514.9368 without restraints) Performing minimization step: 2812. Total energy = 3525.4670 kcal/mol (3513.7344 without restraints) Performing minimization step: 2813. Total energy = 3524.2625 kcal/mol (3512.5335 without restraints) Performing minimization step: 2814. Total energy = 3523.0589 kcal/mol (3511.3335 without restraints) Performing minimization step: 2815. Total energy = 3521.8564 kcal/mol (3510.1345 without restraints) Performing minimization step: 2816. Total energy = 3520.6553 kcal/mol (3508.9370 without restraints) Performing minimization step: 2817. Total energy = 3519.4553 kcal/mol (3507.7407 without restraints) Performing minimization step: 2818. Total energy = 3518.2563 kcal/mol (3506.5452 without restraints) Performing minimization step: 2819. Total energy = 3517.0587 kcal/mol (3505.3511 without restraints) Performing minimization step: 2820. Total energy = 3515.8618 kcal/mol (3504.1578 without restraints) Performing minimization step: 2821. Total energy = 3514.6662 kcal/mol (3502.9657 without restraints) Performing minimization step: 2822. Total energy = 3513.4713 kcal/mol (3501.7744 without restraints) Performing minimization step: 2823. Total energy = 3512.2778 kcal/mol (3500.5846 without restraints) Performing minimization step: 2824. Total energy = 3511.0860 kcal/mol (3499.3963 without restraints) Performing minimization step: 2825. Total energy = 3509.8950 kcal/mol (3498.2090 without restraints) Performing minimization step: 2826. Total energy = 3508.7052 kcal/mol (3497.0226 without restraints) Performing minimization step: 2827. Total energy = 3507.5163 kcal/mol (3495.8373 without restraints) Performing minimization step: 2828. Total energy = 3506.3286 kcal/mol (3494.6531 without restraints) Performing minimization step: 2829. Total energy = 3505.1421 kcal/mol (3493.4703 without restraints) Performing minimization step: 2830. Total energy = 3503.9568 kcal/mol (3492.2885 without restraints) Performing minimization step: 2831. Total energy = 3502.7724 kcal/mol (3491.1077 without restraints) Performing minimization step: 2832. Total energy = 3501.5894 kcal/mol (3489.9285 without restraints) Performing minimization step: 2833. Total energy = 3500.4080 kcal/mol (3488.7504 without restraints) Performing minimization step: 2834. Total energy = 3499.2274 kcal/mol (3487.5736 without restraints) Performing minimization step: 2835. Total energy = 3498.0485 kcal/mol (3486.3982 without restraints) Performing minimization step: 2836. Total energy = 3496.8700 kcal/mol (3485.2230 without restraints) Performing minimization step: 2837. Total energy = 3495.6927 kcal/mol (3484.0494 without restraints) Performing minimization step: 2838. Total energy = 3494.5163 kcal/mol (3482.8765 without restraints) Performing minimization step: 2839. Total energy = 3493.3410 kcal/mol (3481.7048 without restraints) Performing minimization step: 2840. Total energy = 3492.1669 kcal/mol (3480.5342 without restraints) Performing minimization step: 2841. Total energy = 3490.9934 kcal/mol (3479.3642 without restraints) Performing minimization step: 2842. Total energy = 3489.8214 kcal/mol (3478.1958 without restraints) Performing minimization step: 2843. Total energy = 3488.6502 kcal/mol (3477.0281 without restraints) Performing minimization step: 2844. Total energy = 3487.4805 kcal/mol (3475.8620 without restraints) Performing minimization step: 2845. Total energy = 3486.3117 kcal/mol (3474.6968 without restraints) Performing minimization step: 2846. Total energy = 3485.1441 kcal/mol (3473.5327 without restraints) Performing minimization step: 2847. Total energy = 3483.9776 kcal/mol (3472.3697 without restraints) Performing minimization step: 2848. Total energy = 3482.8123 kcal/mol (3471.2078 without restraints) Performing minimization step: 2849. Total energy = 3481.6480 kcal/mol (3470.0472 without restraints) Performing minimization step: 2850. Total energy = 3480.4848 kcal/mol (3468.8875 without restraints) Performing minimization step: 2851. Total energy = 3479.3226 kcal/mol (3467.7289 without restraints) Performing minimization step: 2852. Total energy = 3478.1614 kcal/mol (3466.5715 without restraints) Performing minimization step: 2853. Total energy = 3477.0018 kcal/mol (3465.4153 without restraints) Performing minimization step: 2854. Total energy = 3475.8430 kcal/mol (3464.2599 without restraints) Performing minimization step: 2855. Total energy = 3474.6857 kcal/mol (3463.1061 without restraints) Performing minimization step: 2856. Total energy = 3473.5290 kcal/mol (3461.9529 without restraints) Performing minimization step: 2857. Total energy = 3472.3731 kcal/mol (3460.8006 without restraints) Performing minimization step: 2858. Total energy = 3471.2188 kcal/mol (3459.6498 without restraints) Performing minimization step: 2859. Total energy = 3470.0658 kcal/mol (3458.5003 without restraints) Performing minimization step: 2860. Total energy = 3468.9141 kcal/mol (3457.3521 without restraints) Performing minimization step: 2861. Total energy = 3467.7628 kcal/mol (3456.2044 without restraints) Performing minimization step: 2862. Total energy = 3466.6124 kcal/mol (3455.0576 without restraints) Performing minimization step: 2863. Total energy = 3465.4633 kcal/mol (3453.9120 without restraints) Performing minimization step: 2864. Total energy = 3464.3153 kcal/mol (3452.7675 without restraints) Performing minimization step: 2865. Total energy = 3463.1686 kcal/mol (3451.6243 without restraints) Performing minimization step: 2866. Total energy = 3462.0230 kcal/mol (3450.4822 without restraints) Performing minimization step: 2867. Total energy = 3460.8782 kcal/mol (3449.3410 without restraints) Performing minimization step: 2868. Total energy = 3459.7348 kcal/mol (3448.2011 without restraints) Performing minimization step: 2869. Total energy = 3458.5924 kcal/mol (3447.0622 without restraints) Performing minimization step: 2870. Total energy = 3457.4508 kcal/mol (3445.9242 without restraints) Performing minimization step: 2871. Total energy = 3456.3105 kcal/mol (3444.7875 without restraints) Performing minimization step: 2872. Total energy = 3455.1709 kcal/mol (3443.6513 without restraints) Performing minimization step: 2873. Total energy = 3454.0323 kcal/mol (3442.5162 without restraints) Performing minimization step: 2874. Total energy = 3452.8953 kcal/mol (3441.3828 without restraints) Performing minimization step: 2875. Total energy = 3451.7593 kcal/mol (3440.2502 without restraints) Performing minimization step: 2876. Total energy = 3450.6242 kcal/mol (3439.1186 without restraints) Performing minimization step: 2877. Total energy = 3449.4903 kcal/mol (3437.9883 without restraints) Performing minimization step: 2878. Total energy = 3448.3574 kcal/mol (3436.8588 without restraints) Performing minimization step: 2879. Total energy = 3447.2255 kcal/mol (3435.7306 without restraints) Performing minimization step: 2880. Total energy = 3446.0950 kcal/mol (3434.6034 without restraints) Performing minimization step: 2881. Total energy = 3444.9652 kcal/mol (3433.4771 without restraints) Performing minimization step: 2882. Total energy = 3443.8364 kcal/mol (3432.3519 without restraints) Performing minimization step: 2883. Total energy = 3442.7083 kcal/mol (3431.2272 without restraints) Performing minimization step: 2884. Total energy = 3441.5816 kcal/mol (3430.1041 without restraints) Performing minimization step: 2885. Total energy = 3440.4561 kcal/mol (3428.9821 without restraints) Performing minimization step: 2886. Total energy = 3439.3316 kcal/mol (3427.8611 without restraints) Performing minimization step: 2887. Total energy = 3438.2083 kcal/mol (3426.7413 without restraints) Performing minimization step: 2888. Total energy = 3437.0859 kcal/mol (3425.6223 without restraints) Performing minimization step: 2889. Total energy = 3435.9647 kcal/mol (3424.5047 without restraints) Performing minimization step: 2890. Total energy = 3434.8442 kcal/mol (3423.3877 without restraints) Performing minimization step: 2891. Total energy = 3433.7252 kcal/mol (3422.2721 without restraints) Performing minimization step: 2892. Total energy = 3432.6070 kcal/mol (3421.1574 without restraints) Performing minimization step: 2893. Total energy = 3431.4898 kcal/mol (3420.0437 without restraints) Performing minimization step: 2894. Total energy = 3430.3736 kcal/mol (3418.9311 without restraints) Performing minimization step: 2895. Total energy = 3429.2586 kcal/mol (3417.8196 without restraints) Performing minimization step: 2896. Total energy = 3428.1442 kcal/mol (3416.7087 without restraints) Performing minimization step: 2897. Total energy = 3427.0314 kcal/mol (3415.5993 without restraints) Performing minimization step: 2898. Total energy = 3425.9194 kcal/mol (3414.4908 without restraints) Performing minimization step: 2899. Total energy = 3424.8085 kcal/mol (3413.3834 without restraints) Performing minimization step: 2900. Total energy = 3423.6991 kcal/mol (3412.2775 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 3422.5904 kcal/mol (3411.1724 without restraints) Performing minimization step: 2902. Total energy = 3421.4829 kcal/mol (3410.0682 without restraints) Performing minimization step: 2903. Total energy = 3420.3763 kcal/mol (3408.9651 without restraints) Performing minimization step: 2904. Total energy = 3419.2706 kcal/mol (3407.8629 without restraints) Performing minimization step: 2905. Total energy = 3418.1659 kcal/mol (3406.7617 without restraints) Performing minimization step: 2906. Total energy = 3417.0625 kcal/mol (3405.6618 without restraints) Performing minimization step: 2907. Total energy = 3415.9599 kcal/mol (3404.5625 without restraints) Performing minimization step: 2908. Total energy = 3414.8583 kcal/mol (3403.4645 without restraints) Performing minimization step: 2909. Total energy = 3413.7577 kcal/mol (3402.3674 without restraints) Performing minimization step: 2910. Total energy = 3412.6582 kcal/mol (3401.2714 without restraints) Performing minimization step: 2911. Total energy = 3411.5596 kcal/mol (3400.1763 without restraints) Performing minimization step: 2912. Total energy = 3410.4623 kcal/mol (3399.0825 without restraints) Performing minimization step: 2913. Total energy = 3409.3659 kcal/mol (3397.9895 without restraints) Performing minimization step: 2914. Total energy = 3408.2706 kcal/mol (3396.8977 without restraints) Performing minimization step: 2915. Total energy = 3407.1759 kcal/mol (3395.8062 without restraints) Performing minimization step: 2916. Total energy = 3406.0826 kcal/mol (3394.7167 without restraints) Performing minimization step: 2917. Total energy = 3404.9903 kcal/mol (3393.6278 without restraints) Performing minimization step: 2918. Total energy = 3403.8990 kcal/mol (3392.5399 without restraints) Performing minimization step: 2919. Total energy = 3402.8090 kcal/mol (3391.4534 without restraints) Performing minimization step: 2920. Total energy = 3401.7201 kcal/mol (3390.3679 without restraints) Performing minimization step: 2921. Total energy = 3400.6320 kcal/mol (3389.2833 without restraints) Performing minimization step: 2922. Total energy = 3399.5450 kcal/mol (3388.1999 without restraints) Performing minimization step: 2923. Total energy = 3398.4586 kcal/mol (3387.1168 without restraints) Performing minimization step: 2924. Total energy = 3397.3730 kcal/mol (3386.0347 without restraints) Performing minimization step: 2925. Total energy = 3396.2887 kcal/mol (3384.9539 without restraints) Performing minimization step: 2926. Total energy = 3395.2055 kcal/mol (3383.8741 without restraints) Performing minimization step: 2927. Total energy = 3394.1234 kcal/mol (3382.7955 without restraints) Performing minimization step: 2928. Total energy = 3393.0425 kcal/mol (3381.7182 without restraints) Performing minimization step: 2929. Total energy = 3391.9627 kcal/mol (3380.6415 without restraints) Performing minimization step: 2930. Total energy = 3390.8834 kcal/mol (3379.5658 without restraints) Performing minimization step: 2931. Total energy = 3389.8053 kcal/mol (3378.4913 without restraints) Performing minimization step: 2932. Total energy = 3388.7278 kcal/mol (3377.4171 without restraints) Performing minimization step: 2933. Total energy = 3387.6515 kcal/mol (3376.3443 without restraints) Performing minimization step: 2934. Total energy = 3386.5764 kcal/mol (3375.2726 without restraints) Performing minimization step: 2935. Total energy = 3385.5025 kcal/mol (3374.2023 without restraints) Performing minimization step: 2936. Total energy = 3384.4298 kcal/mol (3373.1329 without restraints) Performing minimization step: 2937. Total energy = 3383.3577 kcal/mol (3372.0644 without restraints) Performing minimization step: 2938. Total energy = 3382.2865 kcal/mol (3370.9966 without restraints) Performing minimization step: 2939. Total energy = 3381.2163 kcal/mol (3369.9298 without restraints) Performing minimization step: 2940. Total energy = 3380.1473 kcal/mol (3368.8644 without restraints) Performing minimization step: 2941. Total energy = 3379.0792 kcal/mol (3367.7996 without restraints) Performing minimization step: 2942. Total energy = 3378.0121 kcal/mol (3366.7360 without restraints) Performing minimization step: 2943. Total energy = 3376.9466 kcal/mol (3365.6738 without restraints) Performing minimization step: 2944. Total energy = 3375.8819 kcal/mol (3364.6130 without restraints) Performing minimization step: 2945. Total energy = 3374.8180 kcal/mol (3363.5521 without restraints) Performing minimization step: 2946. Total energy = 3373.7544 kcal/mol (3362.4918 without restraints) Performing minimization step: 2947. Total energy = 3372.6923 kcal/mol (3361.4334 without restraints) Performing minimization step: 2948. Total energy = 3371.6314 kcal/mol (3360.3757 without restraints) Performing minimization step: 2949. Total energy = 3370.5710 kcal/mol (3359.3189 without restraints) Performing minimization step: 2950. Total energy = 3369.5118 kcal/mol (3358.2631 without restraints) Performing minimization step: 2951. Total energy = 3368.4536 kcal/mol (3357.2083 without restraints) Performing minimization step: 2952. Total energy = 3367.3961 kcal/mol (3356.1543 without restraints) Performing minimization step: 2953. Total energy = 3366.3393 kcal/mol (3355.1009 without restraints) Performing minimization step: 2954. Total energy = 3365.2840 kcal/mol (3354.0490 without restraints) Performing minimization step: 2955. Total energy = 3364.2299 kcal/mol (3352.9987 without restraints) Performing minimization step: 2956. Total energy = 3363.1771 kcal/mol (3351.9490 without restraints) Performing minimization step: 2957. Total energy = 3362.1250 kcal/mol (3350.9003 without restraints) Performing minimization step: 2958. Total energy = 3361.0734 kcal/mol (3349.8520 without restraints) Performing minimization step: 2959. Total energy = 3360.0225 kcal/mol (3348.8044 without restraints) Performing minimization step: 2960. Total energy = 3358.9729 kcal/mol (3347.7584 without restraints) Performing minimization step: 2961. Total energy = 3357.9242 kcal/mol (3346.7132 without restraints) Performing minimization step: 2962. Total energy = 3356.8766 kcal/mol (3345.6691 without restraints) Performing minimization step: 2963. Total energy = 3355.8300 kcal/mol (3344.6258 without restraints) Performing minimization step: 2964. Total energy = 3354.7845 kcal/mol (3343.5837 without restraints) Performing minimization step: 2965. Total energy = 3353.7403 kcal/mol (3342.5430 without restraints) Performing minimization step: 2966. Total energy = 3352.6968 kcal/mol (3341.5028 without restraints) Performing minimization step: 2967. Total energy = 3351.6541 kcal/mol (3340.4636 without restraints) Performing minimization step: 2968. Total energy = 3350.6123 kcal/mol (3339.4252 without restraints) Performing minimization step: 2969. Total energy = 3349.5717 kcal/mol (3338.3880 without restraints) Performing minimization step: 2970. Total energy = 3348.5316 kcal/mol (3337.3513 without restraints) Performing minimization step: 2971. Total energy = 3347.4924 kcal/mol (3336.3156 without restraints) Performing minimization step: 2972. Total energy = 3346.4546 kcal/mol (3335.2811 without restraints) Performing minimization step: 2973. Total energy = 3345.4176 kcal/mol (3334.2475 without restraints) Performing minimization step: 2974. Total energy = 3344.3813 kcal/mol (3333.2147 without restraints) Performing minimization step: 2975. Total energy = 3343.3461 kcal/mol (3332.1828 without restraints) Performing minimization step: 2976. Total energy = 3342.3120 kcal/mol (3331.1522 without restraints) Performing minimization step: 2977. Total energy = 3341.2793 kcal/mol (3330.1228 without restraints) Performing minimization step: 2978. Total energy = 3340.2470 kcal/mol (3329.0940 without restraints) Performing minimization step: 2979. Total energy = 3339.2159 kcal/mol (3328.0662 without restraints) Performing minimization step: 2980. Total energy = 3338.1854 kcal/mol (3327.0392 without restraints) Performing minimization step: 2981. Total energy = 3337.1559 kcal/mol (3326.0130 without restraints) Performing minimization step: 2982. Total energy = 3336.1275 kcal/mol (3324.9881 without restraints) Performing minimization step: 2983. Total energy = 3335.0997 kcal/mol (3323.9637 without restraints) Performing minimization step: 2984. Total energy = 3334.0730 kcal/mol (3322.9404 without restraints) Performing minimization step: 2985. Total energy = 3333.0474 kcal/mol (3321.9182 without restraints) Performing minimization step: 2986. Total energy = 3332.0229 kcal/mol (3320.8971 without restraints) Performing minimization step: 2987. Total energy = 3330.9989 kcal/mol (3319.8764 without restraints) Performing minimization step: 2988. Total energy = 3329.9759 kcal/mol (3318.8569 without restraints) Performing minimization step: 2989. Total energy = 3328.9540 kcal/mol (3317.8383 without restraints) Performing minimization step: 2990. Total energy = 3327.9330 kcal/mol (3316.8207 without restraints) Performing minimization step: 2991. Total energy = 3326.9128 kcal/mol (3315.8039 without restraints) Performing minimization step: 2992. Total energy = 3325.8939 kcal/mol (3314.7883 without restraints) Performing minimization step: 2993. Total energy = 3324.8757 kcal/mol (3313.7735 without restraints) Performing minimization step: 2994. Total energy = 3323.8584 kcal/mol (3312.7597 without restraints) Performing minimization step: 2995. Total energy = 3322.8421 kcal/mol (3311.7467 without restraints) Performing minimization step: 2996. Total energy = 3321.8264 kcal/mol (3310.7344 without restraints) Performing minimization step: 2997. Total energy = 3320.8120 kcal/mol (3309.7234 without restraints) Performing minimization step: 2998. Total energy = 3319.7984 kcal/mol (3308.7130 without restraints) Performing minimization step: 2999. Total energy = 3318.7855 kcal/mol (3307.7037 without restraints) Performing minimization step: 3000. Total energy = 3317.7737 kcal/mol (3306.6951 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 3316.7628 kcal/mol (3305.6876 without restraints) Performing minimization step: 3002. Total energy = 3315.7528 kcal/mol (3304.6811 without restraints) Performing minimization step: 3003. Total energy = 3314.7438 kcal/mol (3303.6755 without restraints) Performing minimization step: 3004. Total energy = 3313.7357 kcal/mol (3302.6708 without restraints) Performing minimization step: 3005. Total energy = 3312.7286 kcal/mol (3301.6670 without restraints) Performing minimization step: 3006. Total energy = 3311.7225 kcal/mol (3300.6643 without restraints) Performing minimization step: 3007. Total energy = 3310.7176 kcal/mol (3299.6626 without restraints) Performing minimization step: 3008. Total energy = 3309.7131 kcal/mol (3298.6617 without restraints) Performing minimization step: 3009. Total energy = 3308.7095 kcal/mol (3297.6614 without restraints) Performing minimization step: 3010. Total energy = 3307.7070 kcal/mol (3296.6623 without restraints) Performing minimization step: 3011. Total energy = 3306.7056 kcal/mol (3295.6643 without restraints) Performing minimization step: 3012. Total energy = 3305.7050 kcal/mol (3294.6671 without restraints) Performing minimization step: 3013. Total energy = 3304.7055 kcal/mol (3293.6709 without restraints) Performing minimization step: 3014. Total energy = 3303.7065 kcal/mol (3292.6752 without restraints) Performing minimization step: 3015. Total energy = 3302.7083 kcal/mol (3291.6803 without restraints) Performing minimization step: 3016. Total energy = 3301.7114 kcal/mol (3290.6869 without restraints) Performing minimization step: 3017. Total energy = 3300.7157 kcal/mol (3289.6945 without restraints) Performing minimization step: 3018. Total energy = 3299.7203 kcal/mol (3288.7025 without restraints) Performing minimization step: 3019. Total energy = 3298.7260 kcal/mol (3287.7115 without restraints) Performing minimization step: 3020. Total energy = 3297.7326 kcal/mol (3286.7215 without restraints) Performing minimization step: 3021. Total energy = 3296.7402 kcal/mol (3285.7325 without restraints) Performing minimization step: 3022. Total energy = 3295.7486 kcal/mol (3284.7443 without restraints) Performing minimization step: 3023. Total energy = 3294.7579 kcal/mol (3283.7569 without restraints) Performing minimization step: 3024. Total energy = 3293.7683 kcal/mol (3282.7707 without restraints) Performing minimization step: 3025. Total energy = 3292.7793 kcal/mol (3281.7850 without restraints) Performing minimization step: 3026. Total energy = 3291.7913 kcal/mol (3280.8004 without restraints) Performing minimization step: 3027. Total energy = 3290.8046 kcal/mol (3279.8173 without restraints) Performing minimization step: 3028. Total energy = 3289.8191 kcal/mol (3278.8349 without restraints) Performing minimization step: 3029. Total energy = 3288.8339 kcal/mol (3277.8529 without restraints) Performing minimization step: 3030. Total energy = 3287.8501 kcal/mol (3276.8725 without restraints) Performing minimization step: 3031. Total energy = 3286.8666 kcal/mol (3275.8924 without restraints) Performing minimization step: 3032. Total energy = 3285.8843 kcal/mol (3274.9135 without restraints) Performing minimization step: 3033. Total energy = 3284.9025 kcal/mol (3273.9350 without restraints) Performing minimization step: 3034. Total energy = 3283.9219 kcal/mol (3272.9577 without restraints) Performing minimization step: 3035. Total energy = 3282.9420 kcal/mol (3271.9811 without restraints) Performing minimization step: 3036. Total energy = 3281.9631 kcal/mol (3271.0058 without restraints) Performing minimization step: 3037. Total energy = 3280.9851 kcal/mol (3270.0310 without restraints) Performing minimization step: 3038. Total energy = 3280.0079 kcal/mol (3269.0570 without restraints) Performing minimization step: 3039. Total energy = 3279.0315 kcal/mol (3268.0840 without restraints) Performing minimization step: 3040. Total energy = 3278.0567 kcal/mol (3267.1127 without restraints) Performing minimization step: 3041. Total energy = 3277.0825 kcal/mol (3266.1417 without restraints) Performing minimization step: 3042. Total energy = 3276.1091 kcal/mol (3265.1716 without restraints) Performing minimization step: 3043. Total energy = 3275.1366 kcal/mol (3264.2025 without restraints) Performing minimization step: 3044. Total energy = 3274.1647 kcal/mol (3263.2339 without restraints) Performing minimization step: 3045. Total energy = 3273.1936 kcal/mol (3262.2661 without restraints) Performing minimization step: 3046. Total energy = 3272.2234 kcal/mol (3261.2993 without restraints) Performing minimization step: 3047. Total energy = 3271.2544 kcal/mol (3260.3336 without restraints) Performing minimization step: 3048. Total energy = 3270.2862 kcal/mol (3259.3687 without restraints) Performing minimization step: 3049. Total energy = 3269.3188 kcal/mol (3258.4047 without restraints) Performing minimization step: 3050. Total energy = 3268.3524 kcal/mol (3257.4416 without restraints) Performing minimization step: 3051. Total energy = 3267.3863 kcal/mol (3256.4789 without restraints) Performing minimization step: 3052. Total energy = 3266.4218 kcal/mol (3255.5176 without restraints) Performing minimization step: 3053. Total energy = 3265.4578 kcal/mol (3254.5571 without restraints) Performing minimization step: 3054. Total energy = 3264.4947 kcal/mol (3253.5972 without restraints) Performing minimization step: 3055. Total energy = 3263.5330 kcal/mol (3252.6392 without restraints) Performing minimization step: 3056. Total energy = 3262.5717 kcal/mol (3251.6808 without restraints) Performing minimization step: 3057. Total energy = 3261.6110 kcal/mol (3250.7235 without restraints) Performing minimization step: 3058. Total energy = 3260.6513 kcal/mol (3249.7671 without restraints) Performing minimization step: 3059. Total energy = 3259.6925 kcal/mol (3248.8117 without restraints) Performing minimization step: 3060. Total energy = 3258.7347 kcal/mol (3247.8571 without restraints) Performing minimization step: 3061. Total energy = 3257.7776 kcal/mol (3246.9033 without restraints) Performing minimization step: 3062. Total energy = 3256.8207 kcal/mol (3245.9497 without restraints) Performing minimization step: 3063. Total energy = 3255.8653 kcal/mol (3244.9977 without restraints) Performing minimization step: 3064. Total energy = 3254.9109 kcal/mol (3244.0467 without restraints) Performing minimization step: 3065. Total energy = 3253.9576 kcal/mol (3243.0969 without restraints) Performing minimization step: 3066. Total energy = 3253.0051 kcal/mol (3242.1474 without restraints) Performing minimization step: 3067. Total energy = 3252.0532 kcal/mol (3241.1988 without restraints) Performing minimization step: 3068. Total energy = 3251.1021 kcal/mol (3240.2510 without restraints) Performing minimization step: 3069. Total energy = 3250.1519 kcal/mol (3239.3041 without restraints) Performing minimization step: 3070. Total energy = 3249.2022 kcal/mol (3238.3574 without restraints) Performing minimization step: 3071. Total energy = 3248.2533 kcal/mol (3237.4122 without restraints) Performing minimization step: 3072. Total energy = 3247.3061 kcal/mol (3236.4682 without restraints) Performing minimization step: 3073. Total energy = 3246.3598 kcal/mol (3235.5253 without restraints) Performing minimization step: 3074. Total energy = 3245.4138 kcal/mol (3234.5827 without restraints) Performing minimization step: 3075. Total energy = 3244.4688 kcal/mol (3233.6409 without restraints) Performing minimization step: 3076. Total energy = 3243.5248 kcal/mol (3232.7002 without restraints) Performing minimization step: 3077. Total energy = 3242.5816 kcal/mol (3231.7603 without restraints) Performing minimization step: 3078. Total energy = 3241.6389 kcal/mol (3230.8209 without restraints) Performing minimization step: 3079. Total energy = 3240.6975 kcal/mol (3229.8827 without restraints) Performing minimization step: 3080. Total energy = 3239.7566 kcal/mol (3228.9451 without restraints) Performing minimization step: 3081. Total energy = 3238.8166 kcal/mol (3228.0084 without restraints) Performing minimization step: 3082. Total energy = 3237.8774 kcal/mol (3227.0725 without restraints) Performing minimization step: 3083. Total energy = 3236.9390 kcal/mol (3226.1375 without restraints) Performing minimization step: 3084. Total energy = 3236.0017 kcal/mol (3225.2036 without restraints) Performing minimization step: 3085. Total energy = 3235.0654 kcal/mol (3224.2704 without restraints) Performing minimization step: 3086. Total energy = 3234.1299 kcal/mol (3223.3383 without restraints) Performing minimization step: 3087. Total energy = 3233.1950 kcal/mol (3222.4066 without restraints) Performing minimization step: 3088. Total energy = 3232.2610 kcal/mol (3221.4759 without restraints) Performing minimization step: 3089. Total energy = 3231.3280 kcal/mol (3220.5461 without restraints) Performing minimization step: 3090. Total energy = 3230.3959 kcal/mol (3219.6176 without restraints) Performing minimization step: 3091. Total energy = 3229.4645 kcal/mol (3218.6893 without restraints) Performing minimization step: 3092. Total energy = 3228.5337 kcal/mol (3217.7617 without restraints) Performing minimization step: 3093. Total energy = 3227.6040 kcal/mol (3216.8353 without restraints) Performing minimization step: 3094. Total energy = 3226.6749 kcal/mol (3215.9095 without restraints) Performing minimization step: 3095. Total energy = 3225.7463 kcal/mol (3214.9841 without restraints) Performing minimization step: 3096. Total energy = 3224.8188 kcal/mol (3214.0599 without restraints) Performing minimization step: 3097. Total energy = 3223.8920 kcal/mol (3213.1365 without restraints) Performing minimization step: 3098. Total energy = 3222.9668 kcal/mol (3212.2146 without restraints) Performing minimization step: 3099. Total energy = 3222.0419 kcal/mol (3211.2929 without restraints) Performing minimization step: 3100. Total energy = 3221.1177 kcal/mol (3210.3720 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 3220.1945 kcal/mol (3209.4522 without restraints) Performing minimization step: 3102. Total energy = 3219.2721 kcal/mol (3208.5329 without restraints) Performing minimization step: 3103. Total energy = 3218.3502 kcal/mol (3207.6143 without restraints) Performing minimization step: 3104. Total energy = 3217.4292 kcal/mol (3206.6966 without restraints) Performing minimization step: 3105. Total energy = 3216.5095 kcal/mol (3205.7804 without restraints) Performing minimization step: 3106. Total energy = 3215.5906 kcal/mol (3204.8645 without restraints) Performing minimization step: 3107. Total energy = 3214.6721 kcal/mol (3203.9494 without restraints) Performing minimization step: 3108. Total energy = 3213.7545 kcal/mol (3203.0349 without restraints) Performing minimization step: 3109. Total energy = 3212.8382 kcal/mol (3202.1219 without restraints) Performing minimization step: 3110. Total energy = 3211.9223 kcal/mol (3201.2092 without restraints) Performing minimization step: 3111. Total energy = 3211.0072 kcal/mol (3200.2974 without restraints) Performing minimization step: 3112. Total energy = 3210.0931 kcal/mol (3199.3865 without restraints) Performing minimization step: 3113. Total energy = 3209.1797 kcal/mol (3198.4766 without restraints) Performing minimization step: 3114. Total energy = 3208.2674 kcal/mol (3197.5674 without restraints) Performing minimization step: 3115. Total energy = 3207.3558 kcal/mol (3196.6591 without restraints) Performing minimization step: 3116. Total energy = 3206.4448 kcal/mol (3195.7513 without restraints) Performing minimization step: 3117. Total energy = 3205.5345 kcal/mol (3194.8443 without restraints) Performing minimization step: 3118. Total energy = 3204.6251 kcal/mol (3193.9381 without restraints) Performing minimization step: 3119. Total energy = 3203.7162 kcal/mol (3193.0324 without restraints) Performing minimization step: 3120. Total energy = 3202.8083 kcal/mol (3192.1279 without restraints) Performing minimization step: 3121. Total energy = 3201.9013 kcal/mol (3191.2241 without restraints) Performing minimization step: 3122. Total energy = 3200.9958 kcal/mol (3190.3218 without restraints) Performing minimization step: 3123. Total energy = 3200.0905 kcal/mol (3189.4200 without restraints) Performing minimization step: 3124. Total energy = 3199.1863 kcal/mol (3188.5189 without restraints) Performing minimization step: 3125. Total energy = 3198.2825 kcal/mol (3187.6184 without restraints) Performing minimization step: 3126. Total energy = 3197.3800 kcal/mol (3186.7191 without restraints) Performing minimization step: 3127. Total energy = 3196.4779 kcal/mol (3185.8202 without restraints) Performing minimization step: 3128. Total energy = 3195.5766 kcal/mol (3184.9222 without restraints) Performing minimization step: 3129. Total energy = 3194.6763 kcal/mol (3184.0251 without restraints) Performing minimization step: 3130. Total energy = 3193.7768 kcal/mol (3183.1288 without restraints) Performing minimization step: 3131. Total energy = 3192.8776 kcal/mol (3182.2329 without restraints) Performing minimization step: 3132. Total energy = 3191.9795 kcal/mol (3181.3380 without restraints) Performing minimization step: 3133. Total energy = 3191.0824 kcal/mol (3180.4442 without restraints) Performing minimization step: 3134. Total energy = 3190.1861 kcal/mol (3179.5511 without restraints) Performing minimization step: 3135. Total energy = 3189.2903 kcal/mol (3178.6585 without restraints) Performing minimization step: 3136. Total energy = 3188.3951 kcal/mol (3177.7665 without restraints) Performing minimization step: 3137. Total energy = 3187.5012 kcal/mol (3176.8760 without restraints) Performing minimization step: 3138. Total energy = 3186.6073 kcal/mol (3175.9853 without restraints) Performing minimization step: 3139. Total energy = 3185.7149 kcal/mol (3175.0961 without restraints) Performing minimization step: 3140. Total energy = 3184.8243 kcal/mol (3174.2087 without restraints) Performing minimization step: 3141. Total energy = 3183.9335 kcal/mol (3173.3214 without restraints) Performing minimization step: 3142. Total energy = 3183.0440 kcal/mol (3172.4349 without restraints) Performing minimization step: 3143. Total energy = 3182.1548 kcal/mol (3171.5492 without restraints) Performing minimization step: 3144. Total energy = 3181.2667 kcal/mol (3170.6642 without restraints) Performing minimization step: 3145. Total energy = 3180.3788 kcal/mol (3169.7795 without restraints) Performing minimization step: 3146. Total energy = 3179.4916 kcal/mol (3168.8955 without restraints) Performing minimization step: 3147. Total energy = 3178.6053 kcal/mol (3168.0124 without restraints) Performing minimization step: 3148. Total energy = 3177.7199 kcal/mol (3167.1304 without restraints) Performing minimization step: 3149. Total energy = 3176.8353 kcal/mol (3166.2489 without restraints) Performing minimization step: 3150. Total energy = 3175.9517 kcal/mol (3165.3686 without restraints) Performing minimization step: 3151. Total energy = 3175.0683 kcal/mol (3164.4884 without restraints) Performing minimization step: 3152. Total energy = 3174.1862 kcal/mol (3163.6094 without restraints) Performing minimization step: 3153. Total energy = 3173.3055 kcal/mol (3162.7319 without restraints) Performing minimization step: 3154. Total energy = 3172.4246 kcal/mol (3161.8543 without restraints) Performing minimization step: 3155. Total energy = 3171.5445 kcal/mol (3160.9774 without restraints) Performing minimization step: 3156. Total energy = 3170.6657 kcal/mol (3160.1018 without restraints) Performing minimization step: 3157. Total energy = 3169.7870 kcal/mol (3159.2263 without restraints) Performing minimization step: 3158. Total energy = 3168.9099 kcal/mol (3158.3525 without restraints) Performing minimization step: 3159. Total energy = 3168.0331 kcal/mol (3157.4788 without restraints) Performing minimization step: 3160. Total energy = 3167.1566 kcal/mol (3156.6056 without restraints) Performing minimization step: 3161. Total energy = 3166.2814 kcal/mol (3155.7336 without restraints) Performing minimization step: 3162. Total energy = 3165.4068 kcal/mol (3154.8623 without restraints) Performing minimization step: 3163. Total energy = 3164.5333 kcal/mol (3153.9920 without restraints) Performing minimization step: 3164. Total energy = 3163.6608 kcal/mol (3153.1226 without restraints) Performing minimization step: 3165. Total energy = 3162.7917 kcal/mol (3152.2535 without restraints) Performing minimization step: 3166. Total energy = 3161.9173 kcal/mol (3151.3855 without restraints) Performing minimization step: 3167. Total energy = 3161.0467 kcal/mol (3150.5181 without restraints) Performing minimization step: 3168. Total energy = 3160.1766 kcal/mol (3149.6513 without restraints) Performing minimization step: 3169. Total energy = 3159.3074 kcal/mol (3148.7852 without restraints) Performing minimization step: 3170. Total energy = 3158.4391 kcal/mol (3147.9203 without restraints) Performing minimization step: 3171. Total energy = 3157.5715 kcal/mol (3147.0558 without restraints) Performing minimization step: 3172. Total energy = 3156.7050 kcal/mol (3146.1924 without restraints) Performing minimization step: 3173. Total energy = 3155.8394 kcal/mol (3145.3300 without restraints) Performing minimization step: 3174. Total energy = 3154.9739 kcal/mol (3144.4677 without restraints) Performing minimization step: 3175. Total energy = 3154.1091 kcal/mol (3143.6062 without restraints) Performing minimization step: 3176. Total energy = 3153.2456 kcal/mol (3142.7460 without restraints) Performing minimization step: 3177. Total energy = 3152.3827 kcal/mol (3141.8862 without restraints) Performing minimization step: 3178. Total energy = 3151.5203 kcal/mol (3141.0269 without restraints) Performing minimization step: 3179. Total energy = 3150.6588 kcal/mol (3140.1686 without restraints) Performing minimization step: 3180. Total energy = 3149.7977 kcal/mol (3139.3107 without restraints) Performing minimization step: 3181. Total energy = 3148.9374 kcal/mol (3138.4537 without restraints) Performing minimization step: 3182. Total energy = 3148.0782 kcal/mol (3137.5976 without restraints) Performing minimization step: 3183. Total energy = 3147.2195 kcal/mol (3136.7421 without restraints) Performing minimization step: 3184. Total energy = 3146.3619 kcal/mol (3135.8878 without restraints) Performing minimization step: 3185. Total energy = 3145.5053 kcal/mol (3135.0346 without restraints) Performing minimization step: 3186. Total energy = 3144.6494 kcal/mol (3134.1816 without restraints) Performing minimization step: 3187. Total energy = 3143.7938 kcal/mol (3133.3292 without restraints) Performing minimization step: 3188. Total energy = 3142.9388 kcal/mol (3132.4774 without restraints) Performing minimization step: 3189. Total energy = 3142.0853 kcal/mol (3131.6271 without restraints) Performing minimization step: 3190. Total energy = 3141.2320 kcal/mol (3130.7771 without restraints) Performing minimization step: 3191. Total energy = 3140.3794 kcal/mol (3129.9276 without restraints) Performing minimization step: 3192. Total energy = 3139.5280 kcal/mol (3129.0794 without restraints) Performing minimization step: 3193. Total energy = 3138.6768 kcal/mol (3128.2313 without restraints) Performing minimization step: 3194. Total energy = 3137.8266 kcal/mol (3127.3843 without restraints) Performing minimization step: 3195. Total energy = 3136.9770 kcal/mol (3126.5379 without restraints) Performing minimization step: 3196. Total energy = 3136.1281 kcal/mol (3125.6921 without restraints) Performing minimization step: 3197. Total energy = 3135.2798 kcal/mol (3124.8469 without restraints) Performing minimization step: 3198. Total energy = 3134.4324 kcal/mol (3124.0028 without restraints) Performing minimization step: 3199. Total energy = 3133.5858 kcal/mol (3123.1593 without restraints) Performing minimization step: 3200. Total energy = 3132.7399 kcal/mol (3122.3166 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 3131.8945 kcal/mol (3121.4744 without restraints) Performing minimization step: 3202. Total energy = 3131.0499 kcal/mol (3120.6330 without restraints) Performing minimization step: 3203. Total energy = 3130.2063 kcal/mol (3119.7925 without restraints) Performing minimization step: 3204. Total energy = 3129.3632 kcal/mol (3118.9526 without restraints) Performing minimization step: 3205. Total energy = 3128.5206 kcal/mol (3118.1132 without restraints) Performing minimization step: 3206. Total energy = 3127.6792 kcal/mol (3117.2749 without restraints) Performing minimization step: 3207. Total energy = 3126.8383 kcal/mol (3116.4372 without restraints) Performing minimization step: 3208. Total energy = 3125.9981 kcal/mol (3115.6002 without restraints) Performing minimization step: 3209. Total energy = 3125.1589 kcal/mol (3114.7642 without restraints) Performing minimization step: 3210. Total energy = 3124.3201 kcal/mol (3113.9283 without restraints) Performing minimization step: 3211. Total energy = 3123.4820 kcal/mol (3113.0937 without restraints) Performing minimization step: 3212. Total energy = 3122.6452 kcal/mol (3112.2600 without restraints) Performing minimization step: 3213. Total energy = 3121.8090 kcal/mol (3111.4269 without restraints) Performing minimization step: 3214. Total energy = 3120.9731 kcal/mol (3110.5943 without restraints) Performing minimization step: 3215. Total energy = 3120.1379 kcal/mol (3109.7623 without restraints) Performing minimization step: 3216. Total energy = 3119.3043 kcal/mol (3108.9317 without restraints) Performing minimization step: 3217. Total energy = 3118.4707 kcal/mol (3108.1012 without restraints) Performing minimization step: 3218. Total energy = 3117.6378 kcal/mol (3107.2715 without restraints) Performing minimization step: 3219. Total energy = 3116.8060 kcal/mol (3106.4429 without restraints) Performing minimization step: 3220. Total energy = 3115.9745 kcal/mol (3105.6146 without restraints) Performing minimization step: 3221. Total energy = 3115.1442 kcal/mol (3104.7875 without restraints) Performing minimization step: 3222. Total energy = 3114.3144 kcal/mol (3103.9607 without restraints) Performing minimization step: 3223. Total energy = 3113.4853 kcal/mol (3103.1348 without restraints) Performing minimization step: 3224. Total energy = 3112.6566 kcal/mol (3102.3092 without restraints) Performing minimization step: 3225. Total energy = 3111.8291 kcal/mol (3101.4851 without restraints) Performing minimization step: 3226. Total energy = 3111.0026 kcal/mol (3100.6615 without restraints) Performing minimization step: 3227. Total energy = 3110.1766 kcal/mol (3099.8389 without restraints) Performing minimization step: 3228. Total energy = 3109.3514 kcal/mol (3099.0166 without restraints) Performing minimization step: 3229. Total energy = 3108.5266 kcal/mol (3098.1949 without restraints) Performing minimization step: 3230. Total energy = 3107.7024 kcal/mol (3097.3739 without restraints) Performing minimization step: 3231. Total energy = 3106.8791 kcal/mol (3096.5537 without restraints) Performing minimization step: 3232. Total energy = 3106.0566 kcal/mol (3095.7344 without restraints) Performing minimization step: 3233. Total energy = 3105.2347 kcal/mol (3094.9157 without restraints) Performing minimization step: 3234. Total energy = 3104.4135 kcal/mol (3094.0975 without restraints) Performing minimization step: 3235. Total energy = 3103.5929 kcal/mol (3093.2801 without restraints) Performing minimization step: 3236. Total energy = 3102.7730 kcal/mol (3092.4635 without restraints) Performing minimization step: 3237. Total energy = 3101.9543 kcal/mol (3091.6477 without restraints) Performing minimization step: 3238. Total energy = 3101.1354 kcal/mol (3090.8320 without restraints) Performing minimization step: 3239. Total energy = 3100.3177 kcal/mol (3090.0174 without restraints) Performing minimization step: 3240. Total energy = 3099.5004 kcal/mol (3089.2032 without restraints) Performing minimization step: 3241. Total energy = 3098.6839 kcal/mol (3088.3899 without restraints) Performing minimization step: 3242. Total energy = 3097.8681 kcal/mol (3087.5771 without restraints) Performing minimization step: 3243. Total energy = 3097.0526 kcal/mol (3086.7648 without restraints) Performing minimization step: 3244. Total energy = 3096.2381 kcal/mol (3085.9534 without restraints) Performing minimization step: 3245. Total energy = 3095.4245 kcal/mol (3085.1430 without restraints) Performing minimization step: 3246. Total energy = 3094.6115 kcal/mol (3084.3331 without restraints) Performing minimization step: 3247. Total energy = 3093.7995 kcal/mol (3083.5243 without restraints) Performing minimization step: 3248. Total energy = 3092.9879 kcal/mol (3082.7158 without restraints) Performing minimization step: 3249. Total energy = 3092.1769 kcal/mol (3081.9079 without restraints) Performing minimization step: 3250. Total energy = 3091.3664 kcal/mol (3081.1005 without restraints) Performing minimization step: 3251. Total energy = 3090.5568 kcal/mol (3080.2940 without restraints) Performing minimization step: 3252. Total energy = 3089.7478 kcal/mol (3079.4882 without restraints) Performing minimization step: 3253. Total energy = 3088.9403 kcal/mol (3078.6839 without restraints) Performing minimization step: 3254. Total energy = 3088.1330 kcal/mol (3077.8796 without restraints) Performing minimization step: 3255. Total energy = 3087.3262 kcal/mol (3077.0759 without restraints) Performing minimization step: 3256. Total energy = 3086.5201 kcal/mol (3076.2729 without restraints) Performing minimization step: 3257. Total energy = 3085.7144 kcal/mol (3075.4704 without restraints) Performing minimization step: 3258. Total energy = 3084.9095 kcal/mol (3074.6685 without restraints) Performing minimization step: 3259. Total energy = 3084.1054 kcal/mol (3073.8676 without restraints) Performing minimization step: 3260. Total energy = 3083.3017 kcal/mol (3073.0669 without restraints) Performing minimization step: 3261. Total energy = 3082.4988 kcal/mol (3072.2672 without restraints) Performing minimization step: 3262. Total energy = 3081.6968 kcal/mol (3071.4683 without restraints) Performing minimization step: 3263. Total energy = 3080.8955 kcal/mol (3070.6701 without restraints) Performing minimization step: 3264. Total energy = 3080.0943 kcal/mol (3069.8720 without restraints) Performing minimization step: 3265. Total energy = 3079.2941 kcal/mol (3069.0751 without restraints) Performing minimization step: 3266. Total energy = 3078.4954 kcal/mol (3068.2794 without restraints) Performing minimization step: 3267. Total energy = 3077.6966 kcal/mol (3067.4837 without restraints) Performing minimization step: 3268. Total energy = 3076.8987 kcal/mol (3066.6889 without restraints) Performing minimization step: 3269. Total energy = 3076.1013 kcal/mol (3065.8946 without restraints) Performing minimization step: 3270. Total energy = 3075.3047 kcal/mol (3065.1011 without restraints) Performing minimization step: 3271. Total energy = 3074.5088 kcal/mol (3064.3083 without restraints) Performing minimization step: 3272. Total energy = 3073.7139 kcal/mol (3063.5165 without restraints) Performing minimization step: 3273. Total energy = 3072.9193 kcal/mol (3062.7250 without restraints) Performing minimization step: 3274. Total energy = 3072.1259 kcal/mol (3061.9347 without restraints) Performing minimization step: 3275. Total energy = 3071.3326 kcal/mol (3061.1444 without restraints) Performing minimization step: 3276. Total energy = 3070.5403 kcal/mol (3060.3553 without restraints) Performing minimization step: 3277. Total energy = 3069.7486 kcal/mol (3059.5665 without restraints) Performing minimization step: 3278. Total energy = 3068.9574 kcal/mol (3058.7785 without restraints) Performing minimization step: 3279. Total energy = 3068.1676 kcal/mol (3057.9919 without restraints) Performing minimization step: 3280. Total energy = 3067.3787 kcal/mol (3057.2063 without restraints) Performing minimization step: 3281. Total energy = 3066.5897 kcal/mol (3056.4200 without restraints) Performing minimization step: 3282. Total energy = 3065.8018 kcal/mol (3055.6355 without restraints) Performing minimization step: 3283. Total energy = 3065.0144 kcal/mol (3054.8510 without restraints) Performing minimization step: 3284. Total energy = 3064.2272 kcal/mol (3054.0670 without restraints) Performing minimization step: 3285. Total energy = 3063.4408 kcal/mol (3053.2836 without restraints) Performing minimization step: 3286. Total energy = 3062.6548 kcal/mol (3052.5007 without restraints) Performing minimization step: 3287. Total energy = 3061.8699 kcal/mol (3051.7191 without restraints) Performing minimization step: 3288. Total energy = 3061.0858 kcal/mol (3050.9379 without restraints) Performing minimization step: 3289. Total energy = 3060.3021 kcal/mol (3050.1573 without restraints) Performing minimization step: 3290. Total energy = 3059.5189 kcal/mol (3049.3770 without restraints) Performing minimization step: 3291. Total energy = 3058.7369 kcal/mol (3048.5983 without restraints) Performing minimization step: 3292. Total energy = 3057.9556 kcal/mol (3047.8200 without restraints) Performing minimization step: 3293. Total energy = 3057.1747 kcal/mol (3047.0422 without restraints) Performing minimization step: 3294. Total energy = 3056.3946 kcal/mol (3046.2652 without restraints) Performing minimization step: 3295. Total energy = 3055.6150 kcal/mol (3045.4887 without restraints) Performing minimization step: 3296. Total energy = 3054.8359 kcal/mol (3044.7126 without restraints) Performing minimization step: 3297. Total energy = 3054.0578 kcal/mol (3043.9376 without restraints) Performing minimization step: 3298. Total energy = 3053.2796 kcal/mol (3043.1625 without restraints) Performing minimization step: 3299. Total energy = 3052.5021 kcal/mol (3042.3881 without restraints) Performing minimization step: 3300. Total energy = 3051.7258 kcal/mol (3041.6148 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 3050.9501 kcal/mol (3040.8422 without restraints) Performing minimization step: 3302. Total energy = 3050.1752 kcal/mol (3040.0705 without restraints) Performing minimization step: 3303. Total energy = 3049.4010 kcal/mol (3039.2991 without restraints) Performing minimization step: 3304. Total energy = 3048.6270 kcal/mol (3038.5281 without restraints) Performing minimization step: 3305. Total energy = 3047.8538 kcal/mol (3037.7582 without restraints) Performing minimization step: 3306. Total energy = 3047.0817 kcal/mol (3036.9891 without restraints) Performing minimization step: 3307. Total energy = 3046.3099 kcal/mol (3036.2204 without restraints) Performing minimization step: 3308. Total energy = 3045.5386 kcal/mol (3035.4522 without restraints) Performing minimization step: 3309. Total energy = 3044.7681 kcal/mol (3034.6848 without restraints) Performing minimization step: 3310. Total energy = 3043.9981 kcal/mol (3033.9178 without restraints) Performing minimization step: 3311. Total energy = 3043.2291 kcal/mol (3033.1518 without restraints) Performing minimization step: 3312. Total energy = 3042.4610 kcal/mol (3032.3869 without restraints) Performing minimization step: 3313. Total energy = 3041.6932 kcal/mol (3031.6220 without restraints) Performing minimization step: 3314. Total energy = 3040.9260 kcal/mol (3030.8579 without restraints) Performing minimization step: 3315. Total energy = 3040.1593 kcal/mol (3030.0943 without restraints) Performing minimization step: 3316. Total energy = 3039.3937 kcal/mol (3029.3317 without restraints) Performing minimization step: 3317. Total energy = 3038.6282 kcal/mol (3028.5692 without restraints) Performing minimization step: 3318. Total energy = 3037.8633 kcal/mol (3027.8074 without restraints) Performing minimization step: 3319. Total energy = 3037.0991 kcal/mol (3027.0462 without restraints) Performing minimization step: 3320. Total energy = 3036.3360 kcal/mol (3026.2862 without restraints) Performing minimization step: 3321. Total energy = 3035.5732 kcal/mol (3025.5265 without restraints) Performing minimization step: 3322. Total energy = 3034.8109 kcal/mol (3024.7672 without restraints) Performing minimization step: 3323. Total energy = 3034.0494 kcal/mol (3024.0088 without restraints) Performing minimization step: 3324. Total energy = 3033.2891 kcal/mol (3023.2515 without restraints) Performing minimization step: 3325. Total energy = 3032.5289 kcal/mol (3022.4944 without restraints) Performing minimization step: 3326. Total energy = 3031.7692 kcal/mol (3021.7377 without restraints) Performing minimization step: 3327. Total energy = 3031.0102 kcal/mol (3020.9817 without restraints) Performing minimization step: 3328. Total energy = 3030.2517 kcal/mol (3020.2263 without restraints) Performing minimization step: 3329. Total energy = 3029.4938 kcal/mol (3019.4713 without restraints) Performing minimization step: 3330. Total energy = 3028.7367 kcal/mol (3018.7174 without restraints) Performing minimization step: 3331. Total energy = 3027.9805 kcal/mol (3017.9643 without restraints) Performing minimization step: 3332. Total energy = 3027.2247 kcal/mol (3017.2114 without restraints) Performing minimization step: 3333. Total energy = 3026.4691 kcal/mol (3016.4589 without restraints) Performing minimization step: 3334. Total energy = 3025.7147 kcal/mol (3015.7075 without restraints) Performing minimization step: 3335. Total energy = 3024.9611 kcal/mol (3014.9570 without restraints) Performing minimization step: 3336. Total energy = 3024.2078 kcal/mol (3014.2068 without restraints) Performing minimization step: 3337. Total energy = 3023.4554 kcal/mol (3013.4574 without restraints) Performing minimization step: 3338. Total energy = 3022.7033 kcal/mol (3012.7083 without restraints) Performing minimization step: 3339. Total energy = 3021.9519 kcal/mol (3011.9600 without restraints) Performing minimization step: 3340. Total energy = 3021.2011 kcal/mol (3011.2121 without restraints) Performing minimization step: 3341. Total energy = 3020.4510 kcal/mol (3010.4651 without restraints) Performing minimization step: 3342. Total energy = 3019.7016 kcal/mol (3009.7187 without restraints) Performing minimization step: 3343. Total energy = 3018.9526 kcal/mol (3008.9727 without restraints) Performing minimization step: 3344. Total energy = 3018.2043 kcal/mol (3008.2276 without restraints) Performing minimization step: 3345. Total energy = 3017.4567 kcal/mol (3007.4830 without restraints) Performing minimization step: 3346. Total energy = 3016.7097 kcal/mol (3006.7389 without restraints) Performing minimization step: 3347. Total energy = 3015.9636 kcal/mol (3005.9959 without restraints) Performing minimization step: 3348. Total energy = 3015.2185 kcal/mol (3005.2541 without restraints) Performing minimization step: 3349. Total energy = 3014.4736 kcal/mol (3004.5118 without restraints) Performing minimization step: 3350. Total energy = 3013.7287 kcal/mol (3003.7699 without restraints) Performing minimization step: 3351. Total energy = 3012.9846 kcal/mol (3003.0289 without restraints) Performing minimization step: 3352. Total energy = 3012.2416 kcal/mol (3002.2890 without restraints) Performing minimization step: 3353. Total energy = 3011.4989 kcal/mol (3001.5492 without restraints) Performing minimization step: 3354. Total energy = 3010.7567 kcal/mol (3000.8100 without restraints) Performing minimization step: 3355. Total energy = 3010.0153 kcal/mol (3000.0717 without restraints) Performing minimization step: 3356. Total energy = 3009.2743 kcal/mol (2999.3337 without restraints) Performing minimization step: 3357. Total energy = 3008.5338 kcal/mol (2998.5962 without restraints) Performing minimization step: 3358. Total energy = 3007.7945 kcal/mol (2997.8599 without restraints) Performing minimization step: 3359. Total energy = 3007.0559 kcal/mol (2997.1243 without restraints) Performing minimization step: 3360. Total energy = 3006.3175 kcal/mol (2996.3890 without restraints) Performing minimization step: 3361. Total energy = 3005.5794 kcal/mol (2995.6539 without restraints) Performing minimization step: 3362. Total energy = 3004.8423 kcal/mol (2994.9198 without restraints) Performing minimization step: 3363. Total energy = 3004.1058 kcal/mol (2994.1863 without restraints) Performing minimization step: 3364. Total energy = 3003.3699 kcal/mol (2993.4535 without restraints) Performing minimization step: 3365. Total energy = 3002.6346 kcal/mol (2992.7210 without restraints) Performing minimization step: 3366. Total energy = 3001.8997 kcal/mol (2991.9892 without restraints) Performing minimization step: 3367. Total energy = 3001.1657 kcal/mol (2991.2582 without restraints) Performing minimization step: 3368. Total energy = 3000.4321 kcal/mol (2990.5275 without restraints) Performing minimization step: 3369. Total energy = 2999.6996 kcal/mol (2989.7982 without restraints) Performing minimization step: 3370. Total energy = 2998.9672 kcal/mol (2989.0687 without restraints) Performing minimization step: 3371. Total energy = 2998.2354 kcal/mol (2988.3398 without restraints) Performing minimization step: 3372. Total energy = 2997.5043 kcal/mol (2987.6118 without restraints) Performing minimization step: 3373. Total energy = 2996.7735 kcal/mol (2986.8837 without restraints) Performing minimization step: 3374. Total energy = 2996.0437 kcal/mol (2986.1573 without restraints) Performing minimization step: 3375. Total energy = 2995.3147 kcal/mol (2985.4311 without restraints) Performing minimization step: 3376. Total energy = 2994.5859 kcal/mol (2984.7054 without restraints) Performing minimization step: 3377. Total energy = 2993.8578 kcal/mol (2983.9802 without restraints) Performing minimization step: 3378. Total energy = 2993.1299 kcal/mol (2983.2553 without restraints) Performing minimization step: 3379. Total energy = 2992.4030 kcal/mol (2982.5314 without restraints) Performing minimization step: 3380. Total energy = 2991.6768 kcal/mol (2981.8082 without restraints) Performing minimization step: 3381. Total energy = 2990.9508 kcal/mol (2981.0851 without restraints) Performing minimization step: 3382. Total energy = 2990.2257 kcal/mol (2980.3630 without restraints) Performing minimization step: 3383. Total energy = 2989.5016 kcal/mol (2979.6419 without restraints) Performing minimization step: 3384. Total energy = 2988.7771 kcal/mol (2978.9204 without restraints) Performing minimization step: 3385. Total energy = 2988.0534 kcal/mol (2978.1996 without restraints) Performing minimization step: 3386. Total energy = 2987.3316 kcal/mol (2977.4809 without restraints) Performing minimization step: 3387. Total energy = 2986.6094 kcal/mol (2976.7617 without restraints) Performing minimization step: 3388. Total energy = 2985.8877 kcal/mol (2976.0430 without restraints) Performing minimization step: 3389. Total energy = 2985.1666 kcal/mol (2975.3249 without restraints) Performing minimization step: 3390. Total energy = 2984.4463 kcal/mol (2974.6076 without restraints) Performing minimization step: 3391. Total energy = 2983.7264 kcal/mol (2973.8907 without restraints) Performing minimization step: 3392. Total energy = 2983.0071 kcal/mol (2973.1743 without restraints) Performing minimization step: 3393. Total energy = 2982.2884 kcal/mol (2972.4585 without restraints) Performing minimization step: 3394. Total energy = 2981.5704 kcal/mol (2971.7435 without restraints) Performing minimization step: 3395. Total energy = 2980.8532 kcal/mol (2971.0293 without restraints) Performing minimization step: 3396. Total energy = 2980.1361 kcal/mol (2970.3151 without restraints) Performing minimization step: 3397. Total energy = 2979.4200 kcal/mol (2969.6021 without restraints) Performing minimization step: 3398. Total energy = 2978.7044 kcal/mol (2968.8895 without restraints) Performing minimization step: 3399. Total energy = 2977.9898 kcal/mol (2968.1778 without restraints) Performing minimization step: 3400. Total energy = 2977.2752 kcal/mol (2967.4661 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 2976.5613 kcal/mol (2966.7552 without restraints) Performing minimization step: 3402. Total energy = 2975.8482 kcal/mol (2966.0453 without restraints) Performing minimization step: 3403. Total energy = 2975.1351 kcal/mol (2965.3350 without restraints) Performing minimization step: 3404. Total energy = 2974.4228 kcal/mol (2964.6256 without restraints) Performing minimization step: 3405. Total energy = 2973.7112 kcal/mol (2963.9170 without restraints) Performing minimization step: 3406. Total energy = 2973.0003 kcal/mol (2963.2090 without restraints) Performing minimization step: 3407. Total energy = 2972.2903 kcal/mol (2962.5022 without restraints) Performing minimization step: 3408. Total energy = 2971.5806 kcal/mol (2961.7952 without restraints) Performing minimization step: 3409. Total energy = 2970.8713 kcal/mol (2961.0889 without restraints) Performing minimization step: 3410. Total energy = 2970.1631 kcal/mol (2960.3838 without restraints) Performing minimization step: 3411. Total energy = 2969.4549 kcal/mol (2959.6784 without restraints) Performing minimization step: 3412. Total energy = 2968.7477 kcal/mol (2958.9744 without restraints) Performing minimization step: 3413. Total energy = 2968.0411 kcal/mol (2958.2705 without restraints) Performing minimization step: 3414. Total energy = 2967.3343 kcal/mol (2957.5666 without restraints) Performing minimization step: 3415. Total energy = 2966.6283 kcal/mol (2956.8637 without restraints) Performing minimization step: 3416. Total energy = 2965.9231 kcal/mol (2956.1614 without restraints) Performing minimization step: 3417. Total energy = 2965.2185 kcal/mol (2955.4598 without restraints) Performing minimization step: 3418. Total energy = 2964.5143 kcal/mol (2954.7585 without restraints) Performing minimization step: 3419. Total energy = 2963.8106 kcal/mol (2954.0578 without restraints) Performing minimization step: 3420. Total energy = 2963.1079 kcal/mol (2953.3581 without restraints) Performing minimization step: 3421. Total energy = 2962.4053 kcal/mol (2952.6583 without restraints) Performing minimization step: 3422. Total energy = 2961.7032 kcal/mol (2951.9592 without restraints) Performing minimization step: 3423. Total energy = 2961.0018 kcal/mol (2951.2606 without restraints) Performing minimization step: 3424. Total energy = 2960.3014 kcal/mol (2950.5631 without restraints) Performing minimization step: 3425. Total energy = 2959.6008 kcal/mol (2949.8656 without restraints) Performing minimization step: 3426. Total energy = 2958.9011 kcal/mol (2949.1688 without restraints) Performing minimization step: 3427. Total energy = 2958.2019 kcal/mol (2948.4726 without restraints) Performing minimization step: 3428. Total energy = 2957.5036 kcal/mol (2947.7772 without restraints) Performing minimization step: 3429. Total energy = 2956.8054 kcal/mol (2947.0819 without restraints) Performing minimization step: 3430. Total energy = 2956.1080 kcal/mol (2946.3874 without restraints) Performing minimization step: 3431. Total energy = 2955.4112 kcal/mol (2945.6937 without restraints) Performing minimization step: 3432. Total energy = 2954.7153 kcal/mol (2945.0006 without restraints) Performing minimization step: 3433. Total energy = 2954.0197 kcal/mol (2944.3080 without restraints) Performing minimization step: 3434. Total energy = 2953.3245 kcal/mol (2943.6157 without restraints) Performing minimization step: 3435. Total energy = 2952.6300 kcal/mol (2942.9241 without restraints) Performing minimization step: 3436. Total energy = 2951.9362 kcal/mol (2942.2333 without restraints) Performing minimization step: 3437. Total energy = 2951.2426 kcal/mol (2941.5426 without restraints) Performing minimization step: 3438. Total energy = 2950.5501 kcal/mol (2940.8530 without restraints) Performing minimization step: 3439. Total energy = 2949.8579 kcal/mol (2940.1639 without restraints) Performing minimization step: 3440. Total energy = 2949.1662 kcal/mol (2939.4750 without restraints) Performing minimization step: 3441. Total energy = 2948.4749 kcal/mol (2938.7865 without restraints) Performing minimization step: 3442. Total energy = 2947.7841 kcal/mol (2938.0987 without restraints) Performing minimization step: 3443. Total energy = 2947.0942 kcal/mol (2937.4119 without restraints) Performing minimization step: 3444. Total energy = 2946.4050 kcal/mol (2936.7255 without restraints) Performing minimization step: 3445. Total energy = 2945.7160 kcal/mol (2936.0396 without restraints) Performing minimization step: 3446. Total energy = 2945.0277 kcal/mol (2935.3540 without restraints) Performing minimization step: 3447. Total energy = 2944.3399 kcal/mol (2934.6692 without restraints) Performing minimization step: 3448. Total energy = 2943.6528 kcal/mol (2933.9849 without restraints) Performing minimization step: 3449. Total energy = 2942.9661 kcal/mol (2933.3013 without restraints) Performing minimization step: 3450. Total energy = 2942.2802 kcal/mol (2932.6183 without restraints) Performing minimization step: 3451. Total energy = 2941.5947 kcal/mol (2931.9357 without restraints) Performing minimization step: 3452. Total energy = 2940.9102 kcal/mol (2931.2540 without restraints) Performing minimization step: 3453. Total energy = 2940.2259 kcal/mol (2930.5724 without restraints) Performing minimization step: 3454. Total energy = 2939.5413 kcal/mol (2929.8910 without restraints) Performing minimization step: 3455. Total energy = 2938.8577 kcal/mol (2929.2102 without restraints) Performing minimization step: 3456. Total energy = 2938.1747 kcal/mol (2928.5301 without restraints) Performing minimization step: 3457. Total energy = 2937.4925 kcal/mol (2927.8509 without restraints) Performing minimization step: 3458. Total energy = 2936.8111 kcal/mol (2927.1724 without restraints) Performing minimization step: 3459. Total energy = 2936.1305 kcal/mol (2926.4948 without restraints) Performing minimization step: 3460. Total energy = 2935.4499 kcal/mol (2925.8170 without restraints) Performing minimization step: 3461. Total energy = 2934.7703 kcal/mol (2925.1402 without restraints) Performing minimization step: 3462. Total energy = 2934.0908 kcal/mol (2924.4638 without restraints) Performing minimization step: 3463. Total energy = 2933.4119 kcal/mol (2923.7877 without restraints) Performing minimization step: 3464. Total energy = 2932.7342 kcal/mol (2923.1130 without restraints) Performing minimization step: 3465. Total energy = 2932.0570 kcal/mol (2922.4387 without restraints) Performing minimization step: 3466. Total energy = 2931.3795 kcal/mol (2921.7640 without restraints) Performing minimization step: 3467. Total energy = 2930.7025 kcal/mol (2921.0898 without restraints) Performing minimization step: 3468. Total energy = 2930.0262 kcal/mol (2920.4165 without restraints) Performing minimization step: 3469. Total energy = 2929.3503 kcal/mol (2919.7435 without restraints) Performing minimization step: 3470. Total energy = 2928.6755 kcal/mol (2919.0716 without restraints) Performing minimization step: 3471. Total energy = 2928.0009 kcal/mol (2918.3998 without restraints) Performing minimization step: 3472. Total energy = 2927.3264 kcal/mol (2917.7282 without restraints) Performing minimization step: 3473. Total energy = 2926.6533 kcal/mol (2917.0581 without restraints) Performing minimization step: 3474. Total energy = 2925.9803 kcal/mol (2916.3879 without restraints) Performing minimization step: 3475. Total energy = 2925.3077 kcal/mol (2915.7182 without restraints) Performing minimization step: 3476. Total energy = 2924.6359 kcal/mol (2915.0493 without restraints) Performing minimization step: 3477. Total energy = 2923.9645 kcal/mol (2914.3810 without restraints) Performing minimization step: 3478. Total energy = 2923.2938 kcal/mol (2913.7130 without restraints) Performing minimization step: 3479. Total energy = 2922.6236 kcal/mol (2913.0457 without restraints) Performing minimization step: 3480. Total energy = 2921.9538 kcal/mol (2912.3788 without restraints) Performing minimization step: 3481. Total energy = 2921.2843 kcal/mol (2911.7121 without restraints) Performing minimization step: 3482. Total energy = 2920.6153 kcal/mol (2911.0460 without restraints) Performing minimization step: 3483. Total energy = 2919.9465 kcal/mol (2910.3801 without restraints) Performing minimization step: 3484. Total energy = 2919.2786 kcal/mol (2909.7150 without restraints) Performing minimization step: 3485. Total energy = 2918.6114 kcal/mol (2909.0507 without restraints) Performing minimization step: 3486. Total energy = 2917.9448 kcal/mol (2908.3873 without restraints) Performing minimization step: 3487. Total energy = 2917.2786 kcal/mol (2907.7237 without restraints) Performing minimization step: 3488. Total energy = 2916.6130 kcal/mol (2907.0610 without restraints) Performing minimization step: 3489. Total energy = 2915.9480 kcal/mol (2906.3990 without restraints) Performing minimization step: 3490. Total energy = 2915.2837 kcal/mol (2905.7375 without restraints) Performing minimization step: 3491. Total energy = 2914.6202 kcal/mol (2905.0769 without restraints) Performing minimization step: 3492. Total energy = 2913.9565 kcal/mol (2904.4160 without restraints) Performing minimization step: 3493. Total energy = 2913.2933 kcal/mol (2903.7555 without restraints) Performing minimization step: 3494. Total energy = 2912.6306 kcal/mol (2903.0959 without restraints) Performing minimization step: 3495. Total energy = 2911.9683 kcal/mol (2902.4363 without restraints) Performing minimization step: 3496. Total energy = 2911.3068 kcal/mol (2901.7778 without restraints) Performing minimization step: 3497. Total energy = 2910.6458 kcal/mol (2901.1195 without restraints) Performing minimization step: 3498. Total energy = 2909.9847 kcal/mol (2900.4614 without restraints) Performing minimization step: 3499. Total energy = 2909.3253 kcal/mol (2899.8048 without restraints) Performing minimization step: 3500. Total energy = 2908.6659 kcal/mol (2899.1483 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 2908.0068 kcal/mol (2898.4920 without restraints) Performing minimization step: 3502. Total energy = 2907.3487 kcal/mol (2897.8370 without restraints) Performing minimization step: 3503. Total energy = 2906.6910 kcal/mol (2897.1820 without restraints) Performing minimization step: 3504. Total energy = 2906.0333 kcal/mol (2896.5272 without restraints) Performing minimization step: 3505. Total energy = 2905.3766 kcal/mol (2895.8733 without restraints) Performing minimization step: 3506. Total energy = 2904.7206 kcal/mol (2895.2201 without restraints) Performing minimization step: 3507. Total energy = 2904.0645 kcal/mol (2894.5668 without restraints) Performing minimization step: 3508. Total energy = 2903.4090 kcal/mol (2893.9142 without restraints) Performing minimization step: 3509. Total energy = 2902.7542 kcal/mol (2893.2623 without restraints) Performing minimization step: 3510. Total energy = 2902.0992 kcal/mol (2892.6102 without restraints) Performing minimization step: 3511. Total energy = 2901.4457 kcal/mol (2891.9595 without restraints) Performing minimization step: 3512. Total energy = 2900.7927 kcal/mol (2891.3094 without restraints) Performing minimization step: 3513. Total energy = 2900.1399 kcal/mol (2890.6594 without restraints) Performing minimization step: 3514. Total energy = 2899.4878 kcal/mol (2890.0101 without restraints) Performing minimization step: 3515. Total energy = 2898.8360 kcal/mol (2889.3613 without restraints) Performing minimization step: 3516. Total energy = 2898.1849 kcal/mol (2888.7131 without restraints) Performing minimization step: 3517. Total energy = 2897.5346 kcal/mol (2888.0655 without restraints) Performing minimization step: 3518. Total energy = 2896.8846 kcal/mol (2887.4183 without restraints) Performing minimization step: 3519. Total energy = 2896.2351 kcal/mol (2886.7717 without restraints) Performing minimization step: 3520. Total energy = 2895.5858 kcal/mol (2886.1251 without restraints) Performing minimization step: 3521. Total energy = 2894.9373 kcal/mol (2885.4795 without restraints) Performing minimization step: 3522. Total energy = 2894.2889 kcal/mol (2884.8339 without restraints) Performing minimization step: 3523. Total energy = 2893.6411 kcal/mol (2884.1890 without restraints) Performing minimization step: 3524. Total energy = 2892.9940 kcal/mol (2883.5448 without restraints) Performing minimization step: 3525. Total energy = 2892.3474 kcal/mol (2882.9009 without restraints) Performing minimization step: 3526. Total energy = 2891.7010 kcal/mol (2882.2574 without restraints) Performing minimization step: 3527. Total energy = 2891.0550 kcal/mol (2881.6142 without restraints) Performing minimization step: 3528. Total energy = 2890.4096 kcal/mol (2880.9717 without restraints) Performing minimization step: 3529. Total energy = 2889.7650 kcal/mol (2880.3299 without restraints) Performing minimization step: 3530. Total energy = 2889.1212 kcal/mol (2879.6892 without restraints) Performing minimization step: 3531. Total energy = 2888.4782 kcal/mol (2879.0488 without restraints) Performing minimization step: 3532. Total energy = 2887.8344 kcal/mol (2878.4077 without restraints) Performing minimization step: 3533. Total energy = 2887.1918 kcal/mol (2877.7680 without restraints) Performing minimization step: 3534. Total energy = 2886.5498 kcal/mol (2877.1289 without restraints) Performing minimization step: 3535. Total energy = 2885.9083 kcal/mol (2876.4901 without restraints) Performing minimization step: 3536. Total energy = 2885.2670 kcal/mol (2875.8515 without restraints) Performing minimization step: 3537. Total energy = 2884.6263 kcal/mol (2875.2139 without restraints) Performing minimization step: 3538. Total energy = 2883.9860 kcal/mol (2874.5764 without restraints) Performing minimization step: 3539. Total energy = 2883.3463 kcal/mol (2873.9395 without restraints) Performing minimization step: 3540. Total energy = 2882.7068 kcal/mol (2873.3028 without restraints) Performing minimization step: 3541. Total energy = 2882.0680 kcal/mol (2872.6667 without restraints) Performing minimization step: 3542. Total energy = 2881.4293 kcal/mol (2872.0308 without restraints) Performing minimization step: 3543. Total energy = 2880.7915 kcal/mol (2871.3959 without restraints) Performing minimization step: 3544. Total energy = 2880.1544 kcal/mol (2870.7617 without restraints) Performing minimization step: 3545. Total energy = 2879.5177 kcal/mol (2870.1277 without restraints) Performing minimization step: 3546. Total energy = 2878.8821 kcal/mol (2869.4950 without restraints) Performing minimization step: 3547. Total energy = 2878.2464 kcal/mol (2868.8621 without restraints) Performing minimization step: 3548. Total energy = 2877.6111 kcal/mol (2868.2296 without restraints) Performing minimization step: 3549. Total energy = 2876.9763 kcal/mol (2867.5975 without restraints) Performing minimization step: 3550. Total energy = 2876.3420 kcal/mol (2866.9663 without restraints) Performing minimization step: 3551. Total energy = 2875.7087 kcal/mol (2866.3356 without restraints) Performing minimization step: 3552. Total energy = 2875.0757 kcal/mol (2865.7054 without restraints) Performing minimization step: 3553. Total energy = 2874.4424 kcal/mol (2865.0750 without restraints) Performing minimization step: 3554. Total energy = 2873.8102 kcal/mol (2864.4455 without restraints) Performing minimization step: 3555. Total energy = 2873.1789 kcal/mol (2863.8172 without restraints) Performing minimization step: 3556. Total energy = 2872.5478 kcal/mol (2863.1888 without restraints) Performing minimization step: 3557. Total energy = 2871.9170 kcal/mol (2862.5607 without restraints) Performing minimization step: 3558. Total energy = 2871.2867 kcal/mol (2861.9332 without restraints) Performing minimization step: 3559. Total energy = 2870.6567 kcal/mol (2861.3059 without restraints) Performing minimization step: 3560. Total energy = 2870.0271 kcal/mol (2860.6792 without restraints) Performing minimization step: 3561. Total energy = 2869.3979 kcal/mol (2860.0528 without restraints) Performing minimization step: 3562. Total energy = 2868.7695 kcal/mol (2859.4272 without restraints) Performing minimization step: 3563. Total energy = 2868.1415 kcal/mol (2858.8020 without restraints) Performing minimization step: 3564. Total energy = 2867.5140 kcal/mol (2858.1773 without restraints) Performing minimization step: 3565. Total energy = 2866.8870 kcal/mol (2857.5531 without restraints) Performing minimization step: 3566. Total energy = 2866.2605 kcal/mol (2856.9294 without restraints) Performing minimization step: 3567. Total energy = 2865.6347 kcal/mol (2856.3063 without restraints) Performing minimization step: 3568. Total energy = 2865.0091 kcal/mol (2855.6836 without restraints) Performing minimization step: 3569. Total energy = 2864.3839 kcal/mol (2855.0611 without restraints) Performing minimization step: 3570. Total energy = 2863.7593 kcal/mol (2854.4393 without restraints) Performing minimization step: 3571. Total energy = 2863.1351 kcal/mol (2853.8179 without restraints) Performing minimization step: 3572. Total energy = 2862.5114 kcal/mol (2853.1970 without restraints) Performing minimization step: 3573. Total energy = 2861.8883 kcal/mol (2852.5767 without restraints) Performing minimization step: 3574. Total energy = 2861.2659 kcal/mol (2851.9572 without restraints) Performing minimization step: 3575. Total energy = 2860.6437 kcal/mol (2851.3376 without restraints) Performing minimization step: 3576. Total energy = 2860.0217 kcal/mol (2850.7185 without restraints) Performing minimization step: 3577. Total energy = 2859.4004 kcal/mol (2850.0999 without restraints) Performing minimization step: 3578. Total energy = 2858.7792 kcal/mol (2849.4815 without restraints) Performing minimization step: 3579. Total energy = 2858.1589 kcal/mol (2848.8639 without restraints) Performing minimization step: 3580. Total energy = 2857.5392 kcal/mol (2848.2472 without restraints) Performing minimization step: 3581. Total energy = 2856.9201 kcal/mol (2847.6306 without restraints) Performing minimization step: 3582. Total energy = 2856.3013 kcal/mol (2847.0145 without restraints) Performing minimization step: 3583. Total energy = 2855.6827 kcal/mol (2846.3988 without restraints) Performing minimization step: 3584. Total energy = 2855.0651 kcal/mol (2845.7840 without restraints) Performing minimization step: 3585. Total energy = 2854.4477 kcal/mol (2845.1695 without restraints) Performing minimization step: 3586. Total energy = 2853.8308 kcal/mol (2844.5553 without restraints) Performing minimization step: 3587. Total energy = 2853.2145 kcal/mol (2843.9417 without restraints) Performing minimization step: 3588. Total energy = 2852.5984 kcal/mol (2843.3284 without restraints) Performing minimization step: 3589. Total energy = 2851.9828 kcal/mol (2842.7156 without restraints) Performing minimization step: 3590. Total energy = 2851.3674 kcal/mol (2842.1029 without restraints) Performing minimization step: 3591. Total energy = 2850.7527 kcal/mol (2841.4910 without restraints) Performing minimization step: 3592. Total energy = 2850.1387 kcal/mol (2840.8798 without restraints) Performing minimization step: 3593. Total energy = 2849.5251 kcal/mol (2840.2690 without restraints) Performing minimization step: 3594. Total energy = 2848.9126 kcal/mol (2839.6592 without restraints) Performing minimization step: 3595. Total energy = 2848.3000 kcal/mol (2839.0493 without restraints) Performing minimization step: 3596. Total energy = 2847.6877 kcal/mol (2838.4399 without restraints) Performing minimization step: 3597. Total energy = 2847.0764 kcal/mol (2837.8313 without restraints) Performing minimization step: 3598. Total energy = 2846.4650 kcal/mol (2837.2226 without restraints) Performing minimization step: 3599. Total energy = 2845.8541 kcal/mol (2836.6144 without restraints) Performing minimization step: 3600. Total energy = 2845.2439 kcal/mol (2836.0070 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 2844.6335 kcal/mol (2835.3994 without restraints) Performing minimization step: 3602. Total energy = 2844.0241 kcal/mol (2834.7927 without restraints) Performing minimization step: 3603. Total energy = 2843.4153 kcal/mol (2834.1865 without restraints) Performing minimization step: 3604. Total energy = 2842.8065 kcal/mol (2833.5806 without restraints) Performing minimization step: 3605. Total energy = 2842.1983 kcal/mol (2832.9751 without restraints) Performing minimization step: 3606. Total energy = 2841.5905 kcal/mol (2832.3701 without restraints) Performing minimization step: 3607. Total energy = 2840.9834 kcal/mol (2831.7657 without restraints) Performing minimization step: 3608. Total energy = 2840.3768 kcal/mol (2831.1621 without restraints) Performing minimization step: 3609. Total energy = 2839.7711 kcal/mol (2830.5589 without restraints) Performing minimization step: 3610. Total energy = 2839.1658 kcal/mol (2829.9566 without restraints) Performing minimization step: 3611. Total energy = 2838.5607 kcal/mol (2829.3540 without restraints) Performing minimization step: 3612. Total energy = 2837.9558 kcal/mol (2828.7519 without restraints) Performing minimization step: 3613. Total energy = 2837.3515 kcal/mol (2828.1503 without restraints) Performing minimization step: 3614. Total energy = 2836.7474 kcal/mol (2827.5490 without restraints) Performing minimization step: 3615. Total energy = 2836.1443 kcal/mol (2826.9486 without restraints) Performing minimization step: 3616. Total energy = 2835.5417 kcal/mol (2826.3488 without restraints) Performing minimization step: 3617. Total energy = 2834.9387 kcal/mol (2825.7484 without restraints) Performing minimization step: 3618. Total energy = 2834.3365 kcal/mol (2825.1491 without restraints) Performing minimization step: 3619. Total energy = 2833.7349 kcal/mol (2824.5500 without restraints) Performing minimization step: 3620. Total energy = 2833.1331 kcal/mol (2823.9510 without restraints) Performing minimization step: 3621. Total energy = 2832.5322 kcal/mol (2823.3527 without restraints) Performing minimization step: 3622. Total energy = 2831.9317 kcal/mol (2822.7552 without restraints) Performing minimization step: 3623. Total energy = 2831.3317 kcal/mol (2822.1578 without restraints) Performing minimization step: 3624. Total energy = 2830.7319 kcal/mol (2821.5608 without restraints) Performing minimization step: 3625. Total energy = 2830.1328 kcal/mol (2820.9643 without restraints) Performing minimization step: 3626. Total energy = 2829.5344 kcal/mol (2820.3688 without restraints) Performing minimization step: 3627. Total energy = 2828.9365 kcal/mol (2819.7735 without restraints) Performing minimization step: 3628. Total energy = 2828.3388 kcal/mol (2819.1786 without restraints) Performing minimization step: 3629. Total energy = 2827.7417 kcal/mol (2818.5842 without restraints) Performing minimization step: 3630. Total energy = 2827.1451 kcal/mol (2817.9903 without restraints) Performing minimization step: 3631. Total energy = 2826.5487 kcal/mol (2817.3967 without restraints) Performing minimization step: 3632. Total energy = 2825.9528 kcal/mol (2816.8034 without restraints) Performing minimization step: 3633. Total energy = 2825.3578 kcal/mol (2816.2112 without restraints) Performing minimization step: 3634. Total energy = 2824.7628 kcal/mol (2815.6189 without restraints) Performing minimization step: 3635. Total energy = 2824.1684 kcal/mol (2815.0272 without restraints) Performing minimization step: 3636. Total energy = 2823.5738 kcal/mol (2814.4353 without restraints) Performing minimization step: 3637. Total energy = 2822.9803 kcal/mol (2813.8445 without restraints) Performing minimization step: 3638. Total energy = 2822.3872 kcal/mol (2813.2541 without restraints) Performing minimization step: 3639. Total energy = 2821.7945 kcal/mol (2812.6642 without restraints) Performing minimization step: 3640. Total energy = 2821.2025 kcal/mol (2812.0751 without restraints) Performing minimization step: 3641. Total energy = 2820.6109 kcal/mol (2811.4860 without restraints) Performing minimization step: 3642. Total energy = 2820.0194 kcal/mol (2810.8973 without restraints) Performing minimization step: 3643. Total energy = 2819.4279 kcal/mol (2810.3084 without restraints) Performing minimization step: 3644. Total energy = 2818.8376 kcal/mol (2809.7208 without restraints) Performing minimization step: 3645. Total energy = 2818.2472 kcal/mol (2809.1331 without restraints) Performing minimization step: 3646. Total energy = 2817.6575 kcal/mol (2808.5461 without restraints) Performing minimization step: 3647. Total energy = 2817.0684 kcal/mol (2807.9597 without restraints) Performing minimization step: 3648. Total energy = 2816.4799 kcal/mol (2807.3744 without restraints) Performing minimization step: 3649. Total energy = 2815.8917 kcal/mol (2806.7884 without restraints) Performing minimization step: 3650. Total energy = 2815.3037 kcal/mol (2806.2032 without restraints) Performing minimization step: 3651. Total energy = 2814.7161 kcal/mol (2805.6183 without restraints) Performing minimization step: 3652. Total energy = 2814.1295 kcal/mol (2805.0343 without restraints) Performing minimization step: 3653. Total energy = 2813.5427 kcal/mol (2804.4502 without restraints) Performing minimization step: 3654. Total energy = 2812.9568 kcal/mol (2803.8670 without restraints) Performing minimization step: 3655. Total energy = 2812.3712 kcal/mol (2803.2842 without restraints) Performing minimization step: 3656. Total energy = 2811.7861 kcal/mol (2802.7015 without restraints) Performing minimization step: 3657. Total energy = 2811.2010 kcal/mol (2802.1192 without restraints) Performing minimization step: 3658. Total energy = 2810.6167 kcal/mol (2801.5377 without restraints) Performing minimization step: 3659. Total energy = 2810.0329 kcal/mol (2800.9565 without restraints) Performing minimization step: 3660. Total energy = 2809.4500 kcal/mol (2800.3763 without restraints) Performing minimization step: 3661. Total energy = 2808.8667 kcal/mol (2799.7957 without restraints) Performing minimization step: 3662. Total energy = 2808.2843 kcal/mol (2799.2160 without restraints) Performing minimization step: 3663. Total energy = 2807.7019 kcal/mol (2798.6364 without restraints) Performing minimization step: 3664. Total energy = 2807.1200 kcal/mol (2798.0571 without restraints) Performing minimization step: 3665. Total energy = 2806.5381 kcal/mol (2797.4779 without restraints) Performing minimization step: 3666. Total energy = 2805.9570 kcal/mol (2796.8995 without restraints) Performing minimization step: 3667. Total energy = 2805.3764 kcal/mol (2796.3215 without restraints) Performing minimization step: 3668. Total energy = 2804.7962 kcal/mol (2795.7441 without restraints) Performing minimization step: 3669. Total energy = 2804.2166 kcal/mol (2795.1671 without restraints) Performing minimization step: 3670. Total energy = 2803.6373 kcal/mol (2794.5904 without restraints) Performing minimization step: 3671. Total energy = 2803.0584 kcal/mol (2794.0143 without restraints) Performing minimization step: 3672. Total energy = 2802.4801 kcal/mol (2793.4388 without restraints) Performing minimization step: 3673. Total energy = 2801.9020 kcal/mol (2792.8632 without restraints) Performing minimization step: 3674. Total energy = 2801.3244 kcal/mol (2792.2882 without restraints) Performing minimization step: 3675. Total energy = 2800.7469 kcal/mol (2791.7135 without restraints) Performing minimization step: 3676. Total energy = 2800.1700 kcal/mol (2791.1391 without restraints) Performing minimization step: 3677. Total energy = 2799.5936 kcal/mol (2790.5654 without restraints) Performing minimization step: 3678. Total energy = 2799.0175 kcal/mol (2789.9921 without restraints) Performing minimization step: 3679. Total energy = 2798.4420 kcal/mol (2789.4192 without restraints) Performing minimization step: 3680. Total energy = 2797.8669 kcal/mol (2788.8468 without restraints) Performing minimization step: 3681. Total energy = 2797.2926 kcal/mol (2788.2752 without restraints) Performing minimization step: 3682. Total energy = 2796.7188 kcal/mol (2787.7041 without restraints) Performing minimization step: 3683. Total energy = 2796.1453 kcal/mol (2787.1331 without restraints) Performing minimization step: 3684. Total energy = 2795.5718 kcal/mol (2786.5623 without restraints) Performing minimization step: 3685. Total energy = 2794.9990 kcal/mol (2785.9922 without restraints) Performing minimization step: 3686. Total energy = 2794.4263 kcal/mol (2785.4220 without restraints) Performing minimization step: 3687. Total energy = 2793.8542 kcal/mol (2784.8529 without restraints) Performing minimization step: 3688. Total energy = 2793.2829 kcal/mol (2784.2841 without restraints) Performing minimization step: 3689. Total energy = 2792.7117 kcal/mol (2783.7156 without restraints) Performing minimization step: 3690. Total energy = 2792.1411 kcal/mol (2783.1477 without restraints) Performing minimization step: 3691. Total energy = 2791.5706 kcal/mol (2782.5798 without restraints) Performing minimization step: 3692. Total energy = 2791.0005 kcal/mol (2782.0123 without restraints) Performing minimization step: 3693. Total energy = 2790.4309 kcal/mol (2781.4453 without restraints) Performing minimization step: 3694. Total energy = 2789.8619 kcal/mol (2780.8790 without restraints) Performing minimization step: 3695. Total energy = 2789.2931 kcal/mol (2780.3129 without restraints) Performing minimization step: 3696. Total energy = 2788.7249 kcal/mol (2779.7474 without restraints) Performing minimization step: 3697. Total energy = 2788.1570 kcal/mol (2779.1823 without restraints) Performing minimization step: 3698. Total energy = 2787.5896 kcal/mol (2778.6173 without restraints) Performing minimization step: 3699. Total energy = 2787.0225 kcal/mol (2778.0528 without restraints) Performing minimization step: 3700. Total energy = 2786.4557 kcal/mol (2777.4887 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 2785.8892 kcal/mol (2776.9248 without restraints) Performing minimization step: 3702. Total energy = 2785.3236 kcal/mol (2776.3619 without restraints) Performing minimization step: 3703. Total energy = 2784.7579 kcal/mol (2775.7988 without restraints) Performing minimization step: 3704. Total energy = 2784.1927 kcal/mol (2775.2363 without restraints) Performing minimization step: 3705. Total energy = 2783.6281 kcal/mol (2774.6743 without restraints) Performing minimization step: 3706. Total energy = 2783.0639 kcal/mol (2774.1128 without restraints) Performing minimization step: 3707. Total energy = 2782.5002 kcal/mol (2773.5517 without restraints) Performing minimization step: 3708. Total energy = 2781.9369 kcal/mol (2772.9910 without restraints) Performing minimization step: 3709. Total energy = 2781.3738 kcal/mol (2772.4305 without restraints) Performing minimization step: 3710. Total energy = 2780.8112 kcal/mol (2771.8706 without restraints) Performing minimization step: 3711. Total energy = 2780.2490 kcal/mol (2771.3110 without restraints) Performing minimization step: 3712. Total energy = 2779.6870 kcal/mol (2770.7516 without restraints) Performing minimization step: 3713. Total energy = 2779.1256 kcal/mol (2770.1929 without restraints) Performing minimization step: 3714. Total energy = 2778.5651 kcal/mol (2769.6349 without restraints) Performing minimization step: 3715. Total energy = 2778.0041 kcal/mol (2769.0765 without restraints) Performing minimization step: 3716. Total energy = 2777.4438 kcal/mol (2768.5189 without restraints) Performing minimization step: 3717. Total energy = 2776.8842 kcal/mol (2767.9619 without restraints) Performing minimization step: 3718. Total energy = 2776.3253 kcal/mol (2767.4057 without restraints) Performing minimization step: 3719. Total energy = 2775.7663 kcal/mol (2766.8493 without restraints) Performing minimization step: 3720. Total energy = 2775.2081 kcal/mol (2766.2937 without restraints) Performing minimization step: 3721. Total energy = 2774.6501 kcal/mol (2765.7384 without restraints) Performing minimization step: 3722. Total energy = 2774.0920 kcal/mol (2765.1829 without restraints) Performing minimization step: 3723. Total energy = 2773.5348 kcal/mol (2764.6283 without restraints) Performing minimization step: 3724. Total energy = 2772.9776 kcal/mol (2764.0737 without restraints) Performing minimization step: 3725. Total energy = 2772.4216 kcal/mol (2763.5203 without restraints) Performing minimization step: 3726. Total energy = 2771.8655 kcal/mol (2762.9670 without restraints) Performing minimization step: 3727. Total energy = 2771.3098 kcal/mol (2762.4138 without restraints) Performing minimization step: 3728. Total energy = 2770.7546 kcal/mol (2761.8613 without restraints) Performing minimization step: 3729. Total energy = 2770.2003 kcal/mol (2761.3097 without restraints) Performing minimization step: 3730. Total energy = 2769.6459 kcal/mol (2760.7577 without restraints) Performing minimization step: 3731. Total energy = 2769.0919 kcal/mol (2760.2064 without restraints) Performing minimization step: 3732. Total energy = 2768.5391 kcal/mol (2759.6562 without restraints) Performing minimization step: 3733. Total energy = 2767.9859 kcal/mol (2759.1056 without restraints) Performing minimization step: 3734. Total energy = 2767.4332 kcal/mol (2758.5554 without restraints) Performing minimization step: 3735. Total energy = 2766.8812 kcal/mol (2758.0062 without restraints) Performing minimization step: 3736. Total energy = 2766.3290 kcal/mol (2757.4565 without restraints) Performing minimization step: 3737. Total energy = 2765.7777 kcal/mol (2756.9077 without restraints) Performing minimization step: 3738. Total energy = 2765.2259 kcal/mol (2756.3588 without restraints) Performing minimization step: 3739. Total energy = 2764.6753 kcal/mol (2755.8108 without restraints) Performing minimization step: 3740. Total energy = 2764.1255 kcal/mol (2755.2634 without restraints) Performing minimization step: 3741. Total energy = 2763.5758 kcal/mol (2754.7163 without restraints) Performing minimization step: 3742. Total energy = 2763.0261 kcal/mol (2754.1694 without restraints) Performing minimization step: 3743. Total energy = 2762.4770 kcal/mol (2753.6227 without restraints) Performing minimization step: 3744. Total energy = 2761.9285 kcal/mol (2753.0767 without restraints) Performing minimization step: 3745. Total energy = 2761.3798 kcal/mol (2752.5306 without restraints) Performing minimization step: 3746. Total energy = 2760.8320 kcal/mol (2751.9855 without restraints) Performing minimization step: 3747. Total energy = 2760.2844 kcal/mol (2751.4404 without restraints) Performing minimization step: 3748. Total energy = 2759.7371 kcal/mol (2750.8958 without restraints) Performing minimization step: 3749. Total energy = 2759.1904 kcal/mol (2750.3517 without restraints) Performing minimization step: 3750. Total energy = 2758.6441 kcal/mol (2749.8079 without restraints) Performing minimization step: 3751. Total energy = 2758.0979 kcal/mol (2749.2643 without restraints) Performing minimization step: 3752. Total energy = 2757.5520 kcal/mol (2748.7209 without restraints) Performing minimization step: 3753. Total energy = 2757.0068 kcal/mol (2748.1785 without restraints) Performing minimization step: 3754. Total energy = 2756.4618 kcal/mol (2747.6359 without restraints) Performing minimization step: 3755. Total energy = 2755.9175 kcal/mol (2747.0942 without restraints) Performing minimization step: 3756. Total energy = 2755.3733 kcal/mol (2746.5526 without restraints) Performing minimization step: 3757. Total energy = 2754.8296 kcal/mol (2746.0116 without restraints) Performing minimization step: 3758. Total energy = 2754.2860 kcal/mol (2745.4706 without restraints) Performing minimization step: 3759. Total energy = 2753.7428 kcal/mol (2744.9299 without restraints) Performing minimization step: 3760. Total energy = 2753.2001 kcal/mol (2744.3897 without restraints) Performing minimization step: 3761. Total energy = 2752.6578 kcal/mol (2743.8503 without restraints) Performing minimization step: 3762. Total energy = 2752.1160 kcal/mol (2743.3108 without restraints) Performing minimization step: 3763. Total energy = 2751.5744 kcal/mol (2742.7718 without restraints) Performing minimization step: 3764. Total energy = 2751.0335 kcal/mol (2742.2336 without restraints) Performing minimization step: 3765. Total energy = 2750.4927 kcal/mol (2741.6952 without restraints) Performing minimization step: 3766. Total energy = 2749.9522 kcal/mol (2741.1573 without restraints) Performing minimization step: 3767. Total energy = 2749.4125 kcal/mol (2740.6201 without restraints) Performing minimization step: 3768. Total energy = 2748.8727 kcal/mol (2740.0830 without restraints) Performing minimization step: 3769. Total energy = 2748.3331 kcal/mol (2739.5458 without restraints) Performing minimization step: 3770. Total energy = 2747.7941 kcal/mol (2739.0096 without restraints) Performing minimization step: 3771. Total energy = 2747.2558 kcal/mol (2738.4738 without restraints) Performing minimization step: 3772. Total energy = 2746.7179 kcal/mol (2737.9385 without restraints) Performing minimization step: 3773. Total energy = 2746.1805 kcal/mol (2737.4035 without restraints) Performing minimization step: 3774. Total energy = 2745.6434 kcal/mol (2736.8690 without restraints) Performing minimization step: 3775. Total energy = 2745.1064 kcal/mol (2736.3346 without restraints) Performing minimization step: 3776. Total energy = 2744.5696 kcal/mol (2735.8004 without restraints) Performing minimization step: 3777. Total energy = 2744.0340 kcal/mol (2735.2674 without restraints) Performing minimization step: 3778. Total energy = 2743.4979 kcal/mol (2734.7338 without restraints) Performing minimization step: 3779. Total energy = 2742.9628 kcal/mol (2734.2013 without restraints) Performing minimization step: 3780. Total energy = 2742.4281 kcal/mol (2733.6692 without restraints) Performing minimization step: 3781. Total energy = 2741.8936 kcal/mol (2733.1372 without restraints) Performing minimization step: 3782. Total energy = 2741.3598 kcal/mol (2732.6061 without restraints) Performing minimization step: 3783. Total energy = 2740.8261 kcal/mol (2732.0748 without restraints) Performing minimization step: 3784. Total energy = 2740.2925 kcal/mol (2731.5437 without restraints) Performing minimization step: 3785. Total energy = 2739.7598 kcal/mol (2731.0137 without restraints) Performing minimization step: 3786. Total energy = 2739.2272 kcal/mol (2730.4838 without restraints) Performing minimization step: 3787. Total energy = 2738.6951 kcal/mol (2729.9540 without restraints) Performing minimization step: 3788. Total energy = 2738.1629 kcal/mol (2729.4243 without restraints) Performing minimization step: 3789. Total energy = 2737.6311 kcal/mol (2728.8951 without restraints) Performing minimization step: 3790. Total energy = 2737.0998 kcal/mol (2728.3663 without restraints) Performing minimization step: 3791. Total energy = 2736.5694 kcal/mol (2727.8385 without restraints) Performing minimization step: 3792. Total energy = 2736.0390 kcal/mol (2727.3106 without restraints) Performing minimization step: 3793. Total energy = 2735.5094 kcal/mol (2726.7837 without restraints) Performing minimization step: 3794. Total energy = 2734.9796 kcal/mol (2726.2563 without restraints) Performing minimization step: 3795. Total energy = 2734.4502 kcal/mol (2725.7297 without restraints) Performing minimization step: 3796. Total energy = 2733.9212 kcal/mol (2725.2030 without restraints) Performing minimization step: 3797. Total energy = 2733.3924 kcal/mol (2724.6767 without restraints) Performing minimization step: 3798. Total energy = 2732.8641 kcal/mol (2724.1510 without restraints) Performing minimization step: 3799. Total energy = 2732.3368 kcal/mol (2723.6266 without restraints) Performing minimization step: 3800. Total energy = 2731.8095 kcal/mol (2723.1014 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 2731.2823 kcal/mol (2722.5767 without restraints) Performing minimization step: 3802. Total energy = 2730.7552 kcal/mol (2722.0522 without restraints) Performing minimization step: 3803. Total energy = 2730.2291 kcal/mol (2721.5287 without restraints) Performing minimization step: 3804. Total energy = 2729.7033 kcal/mol (2721.0054 without restraints) Performing minimization step: 3805. Total energy = 2729.1774 kcal/mol (2720.4820 without restraints) Performing minimization step: 3806. Total energy = 2728.6519 kcal/mol (2719.9590 without restraints) Performing minimization step: 3807. Total energy = 2728.1270 kcal/mol (2719.4366 without restraints) Performing minimization step: 3808. Total energy = 2727.6025 kcal/mol (2718.9145 without restraints) Performing minimization step: 3809. Total energy = 2727.0786 kcal/mol (2718.3935 without restraints) Performing minimization step: 3810. Total energy = 2726.5555 kcal/mol (2717.8728 without restraints) Performing minimization step: 3811. Total energy = 2726.0323 kcal/mol (2717.3520 without restraints) Performing minimization step: 3812. Total energy = 2725.5095 kcal/mol (2716.8318 without restraints) Performing minimization step: 3813. Total energy = 2724.9866 kcal/mol (2716.3114 without restraints) Performing minimization step: 3814. Total energy = 2724.4643 kcal/mol (2715.7915 without restraints) Performing minimization step: 3815. Total energy = 2723.9418 kcal/mol (2715.2716 without restraints) Performing minimization step: 3816. Total energy = 2723.4202 kcal/mol (2714.7525 without restraints) Performing minimization step: 3817. Total energy = 2722.8986 kcal/mol (2714.2334 without restraints) Performing minimization step: 3818. Total energy = 2722.3781 kcal/mol (2713.7154 without restraints) Performing minimization step: 3819. Total energy = 2721.8575 kcal/mol (2713.1974 without restraints) Performing minimization step: 3820. Total energy = 2721.3375 kcal/mol (2712.6798 without restraints) Performing minimization step: 3821. Total energy = 2720.8176 kcal/mol (2712.1625 without restraints) Performing minimization step: 3822. Total energy = 2720.2978 kcal/mol (2711.6453 without restraints) Performing minimization step: 3823. Total energy = 2719.7794 kcal/mol (2711.1293 without restraints) Performing minimization step: 3824. Total energy = 2719.2606 kcal/mol (2710.6130 without restraints) Performing minimization step: 3825. Total energy = 2718.7420 kcal/mol (2710.0969 without restraints) Performing minimization step: 3826. Total energy = 2718.2238 kcal/mol (2709.5812 without restraints) Performing minimization step: 3827. Total energy = 2717.7063 kcal/mol (2709.0663 without restraints) Performing minimization step: 3828. Total energy = 2717.1889 kcal/mol (2708.5514 without restraints) Performing minimization step: 3829. Total energy = 2716.6720 kcal/mol (2708.0369 without restraints) Performing minimization step: 3830. Total energy = 2716.1556 kcal/mol (2707.5231 without restraints) Performing minimization step: 3831. Total energy = 2715.6392 kcal/mol (2707.0092 without restraints) Performing minimization step: 3832. Total energy = 2715.1231 kcal/mol (2706.4956 without restraints) Performing minimization step: 3833. Total energy = 2714.6076 kcal/mol (2705.9826 without restraints) Performing minimization step: 3834. Total energy = 2714.0922 kcal/mol (2705.4697 without restraints) Performing minimization step: 3835. Total energy = 2713.5776 kcal/mol (2704.9577 without restraints) Performing minimization step: 3836. Total energy = 2713.0631 kcal/mol (2704.4455 without restraints) Performing minimization step: 3837. Total energy = 2712.5492 kcal/mol (2703.9341 without restraints) Performing minimization step: 3838. Total energy = 2712.0352 kcal/mol (2703.4226 without restraints) Performing minimization step: 3839. Total energy = 2711.5219 kcal/mol (2702.9121 without restraints) Performing minimization step: 3840. Total energy = 2711.0090 kcal/mol (2702.4016 without restraints) Performing minimization step: 3841. Total energy = 2710.4962 kcal/mol (2701.8912 without restraints) Performing minimization step: 3842. Total energy = 2709.9837 kcal/mol (2701.3811 without restraints) Performing minimization step: 3843. Total energy = 2709.4718 kcal/mol (2700.8717 without restraints) Performing minimization step: 3844. Total energy = 2708.9602 kcal/mol (2700.3626 without restraints) Performing minimization step: 3845. Total energy = 2708.4488 kcal/mol (2699.8537 without restraints) Performing minimization step: 3846. Total energy = 2707.9376 kcal/mol (2699.3450 without restraints) Performing minimization step: 3847. Total energy = 2707.4271 kcal/mol (2698.8370 without restraints) Performing minimization step: 3848. Total energy = 2706.9179 kcal/mol (2698.3302 without restraints) Performing minimization step: 3849. Total energy = 2706.4084 kcal/mol (2697.8232 without restraints) Performing minimization step: 3850. Total energy = 2705.8997 kcal/mol (2697.3172 without restraints) Performing minimization step: 3851. Total energy = 2705.3908 kcal/mol (2696.8107 without restraints) Performing minimization step: 3852. Total energy = 2704.8818 kcal/mol (2696.3040 without restraints) Performing minimization step: 3853. Total energy = 2704.3733 kcal/mol (2695.7981 without restraints) Performing minimization step: 3854. Total energy = 2703.8654 kcal/mol (2695.2928 without restraints) Performing minimization step: 3855. Total energy = 2703.3578 kcal/mol (2694.7878 without restraints) Performing minimization step: 3856. Total energy = 2702.8503 kcal/mol (2694.2823 without restraints) Performing minimization step: 3857. Total energy = 2702.3428 kcal/mol (2693.7775 without restraints) Performing minimization step: 3858. Total energy = 2701.8358 kcal/mol (2693.2729 without restraints) Performing minimization step: 3859. Total energy = 2701.3292 kcal/mol (2692.7687 without restraints) Performing minimization step: 3860. Total energy = 2700.8237 kcal/mol (2692.2658 without restraints) Performing minimization step: 3861. Total energy = 2700.3187 kcal/mol (2691.7633 without restraints) Performing minimization step: 3862. Total energy = 2699.8134 kcal/mol (2691.2603 without restraints) Performing minimization step: 3863. Total energy = 2699.3083 kcal/mol (2690.7577 without restraints) Performing minimization step: 3864. Total energy = 2698.8035 kcal/mol (2690.2554 without restraints) Performing minimization step: 3865. Total energy = 2698.2989 kcal/mol (2689.7532 without restraints) Performing minimization step: 3866. Total energy = 2697.7949 kcal/mol (2689.2518 without restraints) Performing minimization step: 3867. Total energy = 2697.2915 kcal/mol (2688.7508 without restraints) Performing minimization step: 3868. Total energy = 2696.7879 kcal/mol (2688.2497 without restraints) Performing minimization step: 3869. Total energy = 2696.2849 kcal/mol (2687.7493 without restraints) Performing minimization step: 3870. Total energy = 2695.7829 kcal/mol (2687.2496 without restraints) Performing minimization step: 3871. Total energy = 2695.2808 kcal/mol (2686.7500 without restraints) Performing minimization step: 3872. Total energy = 2694.7789 kcal/mol (2686.2505 without restraints) Performing minimization step: 3873. Total energy = 2694.2768 kcal/mol (2685.7508 without restraints) Performing minimization step: 3874. Total energy = 2693.7754 kcal/mol (2685.2519 without restraints) Performing minimization step: 3875. Total energy = 2693.2743 kcal/mol (2684.7534 without restraints) Performing minimization step: 3876. Total energy = 2692.7738 kcal/mol (2684.2554 without restraints) Performing minimization step: 3877. Total energy = 2692.2738 kcal/mol (2683.7576 without restraints) Performing minimization step: 3878. Total energy = 2691.7740 kcal/mol (2683.2603 without restraints) Performing minimization step: 3879. Total energy = 2691.2742 kcal/mol (2682.7630 without restraints) Performing minimization step: 3880. Total energy = 2690.7749 kcal/mol (2682.2661 without restraints) Performing minimization step: 3881. Total energy = 2690.2755 kcal/mol (2681.7692 without restraints) Performing minimization step: 3882. Total energy = 2689.7767 kcal/mol (2681.2727 without restraints) Performing minimization step: 3883. Total energy = 2689.2783 kcal/mol (2680.7768 without restraints) Performing minimization step: 3884. Total energy = 2688.7805 kcal/mol (2680.2815 without restraints) Performing minimization step: 3885. Total energy = 2688.2830 kcal/mol (2679.7864 without restraints) Performing minimization step: 3886. Total energy = 2687.7857 kcal/mol (2679.2916 without restraints) Performing minimization step: 3887. Total energy = 2687.2886 kcal/mol (2678.7968 without restraints) Performing minimization step: 3888. Total energy = 2686.7916 kcal/mol (2678.3022 without restraints) Performing minimization step: 3889. Total energy = 2686.2952 kcal/mol (2677.8082 without restraints) Performing minimization step: 3890. Total energy = 2685.7993 kcal/mol (2677.3150 without restraints) Performing minimization step: 3891. Total energy = 2685.3031 kcal/mol (2676.8212 without restraints) Performing minimization step: 3892. Total energy = 2684.8081 kcal/mol (2676.3286 without restraints) Performing minimization step: 3893. Total energy = 2684.3133 kcal/mol (2675.8363 without restraints) Performing minimization step: 3894. Total energy = 2683.8187 kcal/mol (2675.3441 without restraints) Performing minimization step: 3895. Total energy = 2683.3244 kcal/mol (2674.8522 without restraints) Performing minimization step: 3896. Total energy = 2682.8303 kcal/mol (2674.3606 without restraints) Performing minimization step: 3897. Total energy = 2682.3368 kcal/mol (2673.8694 without restraints) Performing minimization step: 3898. Total energy = 2681.8436 kcal/mol (2673.3787 without restraints) Performing minimization step: 3899. Total energy = 2681.3505 kcal/mol (2672.8880 without restraints) Performing minimization step: 3900. Total energy = 2680.8578 kcal/mol (2672.3977 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 2680.3660 kcal/mol (2671.9083 without restraints) Performing minimization step: 3902. Total energy = 2679.8738 kcal/mol (2671.4185 without restraints) Performing minimization step: 3903. Total energy = 2679.3825 kcal/mol (2670.9297 without restraints) Performing minimization step: 3904. Total energy = 2678.8912 kcal/mol (2670.4407 without restraints) Performing minimization step: 3905. Total energy = 2678.4004 kcal/mol (2669.9526 without restraints) Performing minimization step: 3906. Total energy = 2677.9098 kcal/mol (2669.4642 without restraints) Performing minimization step: 3907. Total energy = 2677.4190 kcal/mol (2668.9759 without restraints) Performing minimization step: 3908. Total energy = 2676.9295 kcal/mol (2668.4887 without restraints) Performing minimization step: 3909. Total energy = 2676.4397 kcal/mol (2668.0014 without restraints) Performing minimization step: 3910. Total energy = 2675.9502 kcal/mol (2667.5143 without restraints) Performing minimization step: 3911. Total energy = 2675.4611 kcal/mol (2667.0276 without restraints) Performing minimization step: 3912. Total energy = 2674.9722 kcal/mol (2666.5411 without restraints) Performing minimization step: 3913. Total energy = 2674.4839 kcal/mol (2666.0554 without restraints) Performing minimization step: 3914. Total energy = 2673.9959 kcal/mol (2665.5696 without restraints) Performing minimization step: 3915. Total energy = 2673.5080 kcal/mol (2665.0842 without restraints) Performing minimization step: 3916. Total energy = 2673.0208 kcal/mol (2664.5994 without restraints) Performing minimization step: 3917. Total energy = 2672.5338 kcal/mol (2664.1147 without restraints) Performing minimization step: 3918. Total energy = 2672.0470 kcal/mol (2663.6303 without restraints) Performing minimization step: 3919. Total energy = 2671.5603 kcal/mol (2663.1459 without restraints) Performing minimization step: 3920. Total energy = 2671.0739 kcal/mol (2662.6621 without restraints) Performing minimization step: 3921. Total energy = 2670.5879 kcal/mol (2662.1785 without restraints) Performing minimization step: 3922. Total energy = 2670.1025 kcal/mol (2661.6955 without restraints) Performing minimization step: 3923. Total energy = 2669.6172 kcal/mol (2661.2126 without restraints) Performing minimization step: 3924. Total energy = 2669.1329 kcal/mol (2660.7307 without restraints) Performing minimization step: 3925. Total energy = 2668.6481 kcal/mol (2660.2483 without restraints) Performing minimization step: 3926. Total energy = 2668.1638 kcal/mol (2659.7664 without restraints) Performing minimization step: 3927. Total energy = 2667.6799 kcal/mol (2659.2849 without restraints) Performing minimization step: 3928. Total energy = 2667.1962 kcal/mol (2658.8036 without restraints) Performing minimization step: 3929. Total energy = 2666.7128 kcal/mol (2658.3226 without restraints) Performing minimization step: 3930. Total energy = 2666.2301 kcal/mol (2657.8424 without restraints) Performing minimization step: 3931. Total energy = 2665.7482 kcal/mol (2657.3627 without restraints) Performing minimization step: 3932. Total energy = 2665.2663 kcal/mol (2656.8831 without restraints) Performing minimization step: 3933. Total energy = 2664.7840 kcal/mol (2656.4034 without restraints) Performing minimization step: 3934. Total energy = 2664.3024 kcal/mol (2655.9241 without restraints) Performing minimization step: 3935. Total energy = 2663.8209 kcal/mol (2655.4451 without restraints) Performing minimization step: 3936. Total energy = 2663.3398 kcal/mol (2654.9663 without restraints) Performing minimization step: 3937. Total energy = 2662.8589 kcal/mol (2654.4878 without restraints) Performing minimization step: 3938. Total energy = 2662.3785 kcal/mol (2654.0098 without restraints) Performing minimization step: 3939. Total energy = 2661.8981 kcal/mol (2653.5318 without restraints) Performing minimization step: 3940. Total energy = 2661.4184 kcal/mol (2653.0544 without restraints) Performing minimization step: 3941. Total energy = 2660.9393 kcal/mol (2652.5779 without restraints) Performing minimization step: 3942. Total energy = 2660.4606 kcal/mol (2652.1016 without restraints) Performing minimization step: 3943. Total energy = 2659.9821 kcal/mol (2651.6254 without restraints) Performing minimization step: 3944. Total energy = 2659.5036 kcal/mol (2651.1493 without restraints) Performing minimization step: 3945. Total energy = 2659.0259 kcal/mol (2650.6739 without restraints) Performing minimization step: 3946. Total energy = 2658.5489 kcal/mol (2650.1993 without restraints) Performing minimization step: 3947. Total energy = 2658.0712 kcal/mol (2649.7238 without restraints) Performing minimization step: 3948. Total energy = 2657.5942 kcal/mol (2649.2493 without restraints) Performing minimization step: 3949. Total energy = 2657.1171 kcal/mol (2648.7745 without restraints) Performing minimization step: 3950. Total energy = 2656.6412 kcal/mol (2648.3010 without restraints) Performing minimization step: 3951. Total energy = 2656.1648 kcal/mol (2647.8269 without restraints) Performing minimization step: 3952. Total energy = 2655.6887 kcal/mol (2647.3532 without restraints) Performing minimization step: 3953. Total energy = 2655.2129 kcal/mol (2646.8798 without restraints) Performing minimization step: 3954. Total energy = 2654.7377 kcal/mol (2646.4071 without restraints) Performing minimization step: 3955. Total energy = 2654.2637 kcal/mol (2645.9353 without restraints) Performing minimization step: 3956. Total energy = 2653.7888 kcal/mol (2645.4628 without restraints) Performing minimization step: 3957. Total energy = 2653.3144 kcal/mol (2644.9910 without restraints) Performing minimization step: 3958. Total energy = 2652.8404 kcal/mol (2644.5191 without restraints) Performing minimization step: 3959. Total energy = 2652.3663 kcal/mol (2644.0475 without restraints) Performing minimization step: 3960. Total energy = 2651.8931 kcal/mol (2643.5766 without restraints) Performing minimization step: 3961. Total energy = 2651.4201 kcal/mol (2643.1059 without restraints) Performing minimization step: 3962. Total energy = 2650.9472 kcal/mol (2642.6355 without restraints) Performing minimization step: 3963. Total energy = 2650.4752 kcal/mol (2642.1659 without restraints) Performing minimization step: 3964. Total energy = 2650.0038 kcal/mol (2641.6966 without restraints) Performing minimization step: 3965. Total energy = 2649.5315 kcal/mol (2641.2268 without restraints) Performing minimization step: 3966. Total energy = 2649.0601 kcal/mol (2640.7578 without restraints) Performing minimization step: 3967. Total energy = 2648.5886 kcal/mol (2640.2886 without restraints) Performing minimization step: 3968. Total energy = 2648.1170 kcal/mol (2639.8193 without restraints) Performing minimization step: 3969. Total energy = 2647.6462 kcal/mol (2639.3508 without restraints) Performing minimization step: 3970. Total energy = 2647.1760 kcal/mol (2638.8830 without restraints) Performing minimization step: 3971. Total energy = 2646.7058 kcal/mol (2638.4151 without restraints) Performing minimization step: 3972. Total energy = 2646.2361 kcal/mol (2637.9477 without restraints) Performing minimization step: 3973. Total energy = 2645.7664 kcal/mol (2637.4805 without restraints) Performing minimization step: 3974. Total energy = 2645.2977 kcal/mol (2637.0141 without restraints) Performing minimization step: 3975. Total energy = 2644.8284 kcal/mol (2636.5471 without restraints) Performing minimization step: 3976. Total energy = 2644.3595 kcal/mol (2636.0807 without restraints) Performing minimization step: 3977. Total energy = 2643.8912 kcal/mol (2635.6146 without restraints) Performing minimization step: 3978. Total energy = 2643.4231 kcal/mol (2635.1489 without restraints) Performing minimization step: 3979. Total energy = 2642.9557 kcal/mol (2634.6838 without restraints) Performing minimization step: 3980. Total energy = 2642.4883 kcal/mol (2634.2187 without restraints) Performing minimization step: 3981. Total energy = 2642.0210 kcal/mol (2633.7538 without restraints) Performing minimization step: 3982. Total energy = 2641.5549 kcal/mol (2633.2901 without restraints) Performing minimization step: 3983. Total energy = 2641.0886 kcal/mol (2632.8260 without restraints) Performing minimization step: 3984. Total energy = 2640.6225 kcal/mol (2632.3623 without restraints) Performing minimization step: 3985. Total energy = 2640.1565 kcal/mol (2631.8986 without restraints) Performing minimization step: 3986. Total energy = 2639.6909 kcal/mol (2631.4352 without restraints) Performing minimization step: 3987. Total energy = 2639.2256 kcal/mol (2630.9724 without restraints) Performing minimization step: 3988. Total energy = 2638.7601 kcal/mol (2630.5091 without restraints) Performing minimization step: 3989. Total energy = 2638.2952 kcal/mol (2630.0466 without restraints) Performing minimization step: 3990. Total energy = 2637.8305 kcal/mol (2629.5842 without restraints) Performing minimization step: 3991. Total energy = 2637.3663 kcal/mol (2629.1225 without restraints) Performing minimization step: 3992. Total energy = 2636.9028 kcal/mol (2628.6612 without restraints) Performing minimization step: 3993. Total energy = 2636.4394 kcal/mol (2628.2001 without restraints) Performing minimization step: 3994. Total energy = 2635.9763 kcal/mol (2627.7393 without restraints) Performing minimization step: 3995. Total energy = 2635.5134 kcal/mol (2627.2788 without restraints) Performing minimization step: 3996. Total energy = 2635.0509 kcal/mol (2626.8186 without restraints) Performing minimization step: 3997. Total energy = 2634.5885 kcal/mol (2626.3585 without restraints) Performing minimization step: 3998. Total energy = 2634.1264 kcal/mol (2625.8984 without restraints) Performing minimization step: 3999. Total energy = 2633.6644 kcal/mol (2625.4390 without restraints) Performing minimization step: 4000. Total energy = 2633.2028 kcal/mol (2624.9798 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 2632.7416 kcal/mol (2624.5208 without restraints) Performing minimization step: 4002. Total energy = 2632.2804 kcal/mol (2624.0620 without restraints) Performing minimization step: 4003. Total energy = 2631.8199 kcal/mol (2623.6038 without restraints) Performing minimization step: 4004. Total energy = 2631.3595 kcal/mol (2623.1457 without restraints) Performing minimization step: 4005. Total energy = 2630.8996 kcal/mol (2622.6881 without restraints) Performing minimization step: 4006. Total energy = 2630.4398 kcal/mol (2622.2306 without restraints) Performing minimization step: 4007. Total energy = 2629.9803 kcal/mol (2621.7733 without restraints) Performing minimization step: 4008. Total energy = 2629.5208 kcal/mol (2621.3163 without restraints) Performing minimization step: 4009. Total energy = 2629.0624 kcal/mol (2620.8601 without restraints) Performing minimization step: 4010. Total energy = 2628.6038 kcal/mol (2620.4039 without restraints) Performing minimization step: 4011. Total energy = 2628.1457 kcal/mol (2619.9481 without restraints) Performing minimization step: 4012. Total energy = 2627.6883 kcal/mol (2619.4930 without restraints) Performing minimization step: 4013. Total energy = 2627.2308 kcal/mol (2619.0378 without restraints) Performing minimization step: 4014. Total energy = 2626.7733 kcal/mol (2618.5825 without restraints) Performing minimization step: 4015. Total energy = 2626.3161 kcal/mol (2618.1277 without restraints) Performing minimization step: 4016. Total energy = 2625.8594 kcal/mol (2617.6733 without restraints) Performing minimization step: 4017. Total energy = 2625.4035 kcal/mol (2617.2204 without restraints) Performing minimization step: 4018. Total energy = 2624.9480 kcal/mol (2616.7665 without restraints) Performing minimization step: 4019. Total energy = 2624.4924 kcal/mol (2616.3132 without restraints) Performing minimization step: 4020. Total energy = 2624.0370 kcal/mol (2615.8601 without restraints) Performing minimization step: 4021. Total energy = 2623.5816 kcal/mol (2615.4070 without restraints) Performing minimization step: 4022. Total energy = 2623.1264 kcal/mol (2614.9540 without restraints) Performing minimization step: 4023. Total energy = 2622.6715 kcal/mol (2614.5014 without restraints) Performing minimization step: 4024. Total energy = 2622.2170 kcal/mol (2614.0494 without restraints) Performing minimization step: 4025. Total energy = 2621.7630 kcal/mol (2613.5975 without restraints) Performing minimization step: 4026. Total energy = 2621.3083 kcal/mol (2613.1451 without restraints) Performing minimization step: 4027. Total energy = 2620.8546 kcal/mol (2612.6936 without restraints) Performing minimization step: 4028. Total energy = 2620.4013 kcal/mol (2612.2424 without restraints) Performing minimization step: 4029. Total energy = 2619.9481 kcal/mol (2611.7919 without restraints) Performing minimization step: 4030. Total energy = 2619.4954 kcal/mol (2611.3413 without restraints) Performing minimization step: 4031. Total energy = 2619.0431 kcal/mol (2610.8913 without restraints) Performing minimization step: 4032. Total energy = 2618.5912 kcal/mol (2610.4416 without restraints) Performing minimization step: 4033. Total energy = 2618.1392 kcal/mol (2609.9919 without restraints) Performing minimization step: 4034. Total energy = 2617.6880 kcal/mol (2609.5429 without restraints) Performing minimization step: 4035. Total energy = 2617.2365 kcal/mol (2609.0938 without restraints) Performing minimization step: 4036. Total energy = 2616.7854 kcal/mol (2608.6450 without restraints) Performing minimization step: 4037. Total energy = 2616.3346 kcal/mol (2608.1964 without restraints) Performing minimization step: 4038. Total energy = 2615.8838 kcal/mol (2607.7480 without restraints) Performing minimization step: 4039. Total energy = 2615.4337 kcal/mol (2607.3001 without restraints) Performing minimization step: 4040. Total energy = 2614.9837 kcal/mol (2606.8524 without restraints) Performing minimization step: 4041. Total energy = 2614.5340 kcal/mol (2606.4050 without restraints) Performing minimization step: 4042. Total energy = 2614.0845 kcal/mol (2605.9578 without restraints) Performing minimization step: 4043. Total energy = 2613.6353 kcal/mol (2605.5108 without restraints) Performing minimization step: 4044. Total energy = 2613.1867 kcal/mol (2605.0644 without restraints) Performing minimization step: 4045. Total energy = 2612.7380 kcal/mol (2604.6181 without restraints) Performing minimization step: 4046. Total energy = 2612.2897 kcal/mol (2604.1722 without restraints) Performing minimization step: 4047. Total energy = 2611.8420 kcal/mol (2603.7266 without restraints) Performing minimization step: 4048. Total energy = 2611.3944 kcal/mol (2603.2813 without restraints) Performing minimization step: 4049. Total energy = 2610.9472 kcal/mol (2602.8364 without restraints) Performing minimization step: 4050. Total energy = 2610.5004 kcal/mol (2602.3917 without restraints) Performing minimization step: 4051. Total energy = 2610.0542 kcal/mol (2601.9482 without restraints) Performing minimization step: 4052. Total energy = 2609.6086 kcal/mol (2601.5045 without restraints) Performing minimization step: 4053. Total energy = 2609.1621 kcal/mol (2601.0601 without restraints) Performing minimization step: 4054. Total energy = 2608.7163 kcal/mol (2600.6168 without restraints) Performing minimization step: 4055. Total energy = 2608.2709 kcal/mol (2600.1735 without restraints) Performing minimization step: 4056. Total energy = 2607.8255 kcal/mol (2599.7304 without restraints) Performing minimization step: 4057. Total energy = 2607.3806 kcal/mol (2599.2879 without restraints) Performing minimization step: 4058. Total energy = 2606.9358 kcal/mol (2598.8452 without restraints) Performing minimization step: 4059. Total energy = 2606.4913 kcal/mol (2598.4030 without restraints) Performing minimization step: 4060. Total energy = 2606.0475 kcal/mol (2597.9616 without restraints) Performing minimization step: 4061. Total energy = 2605.6035 kcal/mol (2597.5196 without restraints) Performing minimization step: 4062. Total energy = 2605.1599 kcal/mol (2597.0785 without restraints) Performing minimization step: 4063. Total energy = 2604.7167 kcal/mol (2596.6373 without restraints) Performing minimization step: 4064. Total energy = 2604.2738 kcal/mol (2596.1967 without restraints) Performing minimization step: 4065. Total energy = 2603.8311 kcal/mol (2595.7563 without restraints) Performing minimization step: 4066. Total energy = 2603.3886 kcal/mol (2595.3160 without restraints) Performing minimization step: 4067. Total energy = 2602.9462 kcal/mol (2594.8757 without restraints) Performing minimization step: 4068. Total energy = 2602.5040 kcal/mol (2594.4359 without restraints) Performing minimization step: 4069. Total energy = 2602.0620 kcal/mol (2593.9961 without restraints) Performing minimization step: 4070. Total energy = 2601.6204 kcal/mol (2593.5567 without restraints) Performing minimization step: 4071. Total energy = 2601.1791 kcal/mol (2593.1178 without restraints) Performing minimization step: 4072. Total energy = 2600.7392 kcal/mol (2592.6801 without restraints) Performing minimization step: 4073. Total energy = 2600.2979 kcal/mol (2592.2410 without restraints) Performing minimization step: 4074. Total energy = 2599.8575 kcal/mol (2591.8029 without restraints) Performing minimization step: 4075. Total energy = 2599.4175 kcal/mol (2591.3650 without restraints) Performing minimization step: 4076. Total energy = 2598.9776 kcal/mol (2590.9274 without restraints) Performing minimization step: 4077. Total energy = 2598.5378 kcal/mol (2590.4898 without restraints) Performing minimization step: 4078. Total energy = 2598.0985 kcal/mol (2590.0527 without restraints) Performing minimization step: 4079. Total energy = 2597.6593 kcal/mol (2589.6157 without restraints) Performing minimization step: 4080. Total energy = 2597.2204 kcal/mol (2589.1792 without restraints) Performing minimization step: 4081. Total energy = 2596.7821 kcal/mol (2588.7431 without restraints) Performing minimization step: 4082. Total energy = 2596.3442 kcal/mol (2588.3074 without restraints) Performing minimization step: 4083. Total energy = 2595.9061 kcal/mol (2587.8715 without restraints) Performing minimization step: 4084. Total energy = 2595.4686 kcal/mol (2587.4361 without restraints) Performing minimization step: 4085. Total energy = 2595.0310 kcal/mol (2587.0010 without restraints) Performing minimization step: 4086. Total energy = 2594.5942 kcal/mol (2586.5662 without restraints) Performing minimization step: 4087. Total energy = 2594.1576 kcal/mol (2586.1320 without restraints) Performing minimization step: 4088. Total energy = 2593.7215 kcal/mol (2585.6981 without restraints) Performing minimization step: 4089. Total energy = 2593.2854 kcal/mol (2585.2640 without restraints) Performing minimization step: 4090. Total energy = 2592.8489 kcal/mol (2584.8297 without restraints) Performing minimization step: 4091. Total energy = 2592.4130 kcal/mol (2584.3961 without restraints) Performing minimization step: 4092. Total energy = 2591.9772 kcal/mol (2583.9626 without restraints) Performing minimization step: 4093. Total energy = 2591.5425 kcal/mol (2583.5304 without restraints) Performing minimization step: 4094. Total energy = 2591.1071 kcal/mol (2583.0969 without restraints) Performing minimization step: 4095. Total energy = 2590.6728 kcal/mol (2582.6649 without restraints) Performing minimization step: 4096. Total energy = 2590.2384 kcal/mol (2582.2327 without restraints) Performing minimization step: 4097. Total energy = 2589.8042 kcal/mol (2581.8005 without restraints) Performing minimization step: 4098. Total energy = 2589.3698 kcal/mol (2581.3684 without restraints) Performing minimization step: 4099. Total energy = 2588.9361 kcal/mol (2580.9370 without restraints) Performing minimization step: 4100. Total energy = 2588.5030 kcal/mol (2580.5060 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 2588.0698 kcal/mol (2580.0751 without restraints) Performing minimization step: 4102. Total energy = 2587.6368 kcal/mol (2579.6442 without restraints) Performing minimization step: 4103. Total energy = 2587.2039 kcal/mol (2579.2135 without restraints) Performing minimization step: 4104. Total energy = 2586.7716 kcal/mol (2578.7834 without restraints) Performing minimization step: 4105. Total energy = 2586.3393 kcal/mol (2578.3533 without restraints) Performing minimization step: 4106. Total energy = 2585.9072 kcal/mol (2577.9236 without restraints) Performing minimization step: 4107. Total energy = 2585.4759 kcal/mol (2577.4943 without restraints) Performing minimization step: 4108. Total energy = 2585.0444 kcal/mol (2577.0650 without restraints) Performing minimization step: 4109. Total energy = 2584.6131 kcal/mol (2576.6360 without restraints) Performing minimization step: 4110. Total energy = 2584.1826 kcal/mol (2576.2076 without restraints) Performing minimization step: 4111. Total energy = 2583.7520 kcal/mol (2575.7792 without restraints) Performing minimization step: 4112. Total energy = 2583.3213 kcal/mol (2575.3508 without restraints) Performing minimization step: 4113. Total energy = 2582.8910 kcal/mol (2574.9226 without restraints) Performing minimization step: 4114. Total energy = 2582.4612 kcal/mol (2574.4951 without restraints) Performing minimization step: 4115. Total energy = 2582.0318 kcal/mol (2574.0677 without restraints) Performing minimization step: 4116. Total energy = 2581.6024 kcal/mol (2573.6406 without restraints) Performing minimization step: 4117. Total energy = 2581.1730 kcal/mol (2573.2134 without restraints) Performing minimization step: 4118. Total energy = 2580.7443 kcal/mol (2572.7869 without restraints) Performing minimization step: 4119. Total energy = 2580.3161 kcal/mol (2572.3609 without restraints) Performing minimization step: 4120. Total energy = 2579.8879 kcal/mol (2571.9348 without restraints) Performing minimization step: 4121. Total energy = 2579.4599 kcal/mol (2571.5090 without restraints) Performing minimization step: 4122. Total energy = 2579.0323 kcal/mol (2571.0836 without restraints) Performing minimization step: 4123. Total energy = 2578.6045 kcal/mol (2570.6579 without restraints) Performing minimization step: 4124. Total energy = 2578.1776 kcal/mol (2570.2332 without restraints) Performing minimization step: 4125. Total energy = 2577.7509 kcal/mol (2569.8087 without restraints) Performing minimization step: 4126. Total energy = 2577.3240 kcal/mol (2569.3841 without restraints) Performing minimization step: 4127. Total energy = 2576.8978 kcal/mol (2568.9600 without restraints) Performing minimization step: 4128. Total energy = 2576.4715 kcal/mol (2568.5358 without restraints) Performing minimization step: 4129. Total energy = 2576.0458 kcal/mol (2568.1122 without restraints) Performing minimization step: 4130. Total energy = 2575.6206 kcal/mol (2567.6893 without restraints) Performing minimization step: 4131. Total energy = 2575.1953 kcal/mol (2567.2661 without restraints) Performing minimization step: 4132. Total energy = 2574.7700 kcal/mol (2566.8430 without restraints) Performing minimization step: 4133. Total energy = 2574.3452 kcal/mol (2566.4205 without restraints) Performing minimization step: 4134. Total energy = 2573.9210 kcal/mol (2565.9985 without restraints) Performing minimization step: 4135. Total energy = 2573.4970 kcal/mol (2565.5765 without restraints) Performing minimization step: 4136. Total energy = 2573.0728 kcal/mol (2565.1545 without restraints) Performing minimization step: 4137. Total energy = 2572.6490 kcal/mol (2564.7329 without restraints) Performing minimization step: 4138. Total energy = 2572.2261 kcal/mol (2564.3121 without restraints) Performing minimization step: 4139. Total energy = 2571.8028 kcal/mol (2563.8911 without restraints) Performing minimization step: 4140. Total energy = 2571.3797 kcal/mol (2563.4700 without restraints) Performing minimization step: 4141. Total energy = 2570.9567 kcal/mol (2563.0492 without restraints) Performing minimization step: 4142. Total energy = 2570.5341 kcal/mol (2562.6287 without restraints) Performing minimization step: 4143. Total energy = 2570.1116 kcal/mol (2562.2084 without restraints) Performing minimization step: 4144. Total energy = 2569.6893 kcal/mol (2561.7883 without restraints) Performing minimization step: 4145. Total energy = 2569.2677 kcal/mol (2561.3689 without restraints) Performing minimization step: 4146. Total energy = 2568.8461 kcal/mol (2560.9494 without restraints) Performing minimization step: 4147. Total energy = 2568.4250 kcal/mol (2560.5305 without restraints) Performing minimization step: 4148. Total energy = 2568.0037 kcal/mol (2560.1113 without restraints) Performing minimization step: 4149. Total energy = 2567.5825 kcal/mol (2559.6922 without restraints) Performing minimization step: 4150. Total energy = 2567.1623 kcal/mol (2559.2742 without restraints) Performing minimization step: 4151. Total energy = 2566.7418 kcal/mol (2558.8559 without restraints) Performing minimization step: 4152. Total energy = 2566.3220 kcal/mol (2558.4382 without restraints) Performing minimization step: 4153. Total energy = 2565.9024 kcal/mol (2558.0208 without restraints) Performing minimization step: 4154. Total energy = 2565.4830 kcal/mol (2557.6035 without restraints) Performing minimization step: 4155. Total energy = 2565.0640 kcal/mol (2557.1868 without restraints) Performing minimization step: 4156. Total energy = 2564.6450 kcal/mol (2556.7696 without restraints) Performing minimization step: 4157. Total energy = 2564.2263 kcal/mol (2556.3532 without restraints) Performing minimization step: 4158. Total energy = 2563.8076 kcal/mol (2555.9366 without restraints) Performing minimization step: 4159. Total energy = 2563.3890 kcal/mol (2555.5202 without restraints) Performing minimization step: 4160. Total energy = 2562.9707 kcal/mol (2555.1040 without restraints) Performing minimization step: 4161. Total energy = 2562.5526 kcal/mol (2554.6881 without restraints) Performing minimization step: 4162. Total energy = 2562.1348 kcal/mol (2554.2724 without restraints) Performing minimization step: 4163. Total energy = 2561.7173 kcal/mol (2553.8570 without restraints) Performing minimization step: 4164. Total energy = 2561.3001 kcal/mol (2553.4419 without restraints) Performing minimization step: 4165. Total energy = 2560.8830 kcal/mol (2553.0270 without restraints) Performing minimization step: 4166. Total energy = 2560.4664 kcal/mol (2552.6125 without restraints) Performing minimization step: 4167. Total energy = 2560.0498 kcal/mol (2552.1981 without restraints) Performing minimization step: 4168. Total energy = 2559.6335 kcal/mol (2551.7839 without restraints) Performing minimization step: 4169. Total energy = 2559.2174 kcal/mol (2551.3699 without restraints) Performing minimization step: 4170. Total energy = 2558.8013 kcal/mol (2550.9560 without restraints) Performing minimization step: 4171. Total energy = 2558.3860 kcal/mol (2550.5429 without restraints) Performing minimization step: 4172. Total energy = 2557.9708 kcal/mol (2550.1297 without restraints) Performing minimization step: 4173. Total energy = 2557.5560 kcal/mol (2549.7169 without restraints) Performing minimization step: 4174. Total energy = 2557.1412 kcal/mol (2549.3043 without restraints) Performing minimization step: 4175. Total energy = 2556.7265 kcal/mol (2548.8918 without restraints) Performing minimization step: 4176. Total energy = 2556.3122 kcal/mol (2548.4796 without restraints) Performing minimization step: 4177. Total energy = 2555.8977 kcal/mol (2548.0672 without restraints) Performing minimization step: 4178. Total energy = 2555.4837 kcal/mol (2547.6555 without restraints) Performing minimization step: 4179. Total energy = 2555.0702 kcal/mol (2547.2439 without restraints) Performing minimization step: 4180. Total energy = 2554.6572 kcal/mol (2546.8331 without restraints) Performing minimization step: 4181. Total energy = 2554.2440 kcal/mol (2546.4220 without restraints) Performing minimization step: 4182. Total energy = 2553.8313 kcal/mol (2546.0114 without restraints) Performing minimization step: 4183. Total energy = 2553.4186 kcal/mol (2545.6008 without restraints) Performing minimization step: 4184. Total energy = 2553.0059 kcal/mol (2545.1902 without restraints) Performing minimization step: 4185. Total energy = 2552.5940 kcal/mol (2544.7805 without restraints) Performing minimization step: 4186. Total energy = 2552.1819 kcal/mol (2544.3705 without restraints) Performing minimization step: 4187. Total energy = 2551.7702 kcal/mol (2543.9609 without restraints) Performing minimization step: 4188. Total energy = 2551.3590 kcal/mol (2543.5518 without restraints) Performing minimization step: 4189. Total energy = 2550.9482 kcal/mol (2543.1430 without restraints) Performing minimization step: 4190. Total energy = 2550.5373 kcal/mol (2542.7343 without restraints) Performing minimization step: 4191. Total energy = 2550.1264 kcal/mol (2542.3255 without restraints) Performing minimization step: 4192. Total energy = 2549.7160 kcal/mol (2541.9172 without restraints) Performing minimization step: 4193. Total energy = 2549.3057 kcal/mol (2541.5090 without restraints) Performing minimization step: 4194. Total energy = 2548.8956 kcal/mol (2541.1011 without restraints) Performing minimization step: 4195. Total energy = 2548.4859 kcal/mol (2540.6934 without restraints) Performing minimization step: 4196. Total energy = 2548.0761 kcal/mol (2540.2857 without restraints) Performing minimization step: 4197. Total energy = 2547.6662 kcal/mol (2539.8779 without restraints) Performing minimization step: 4198. Total energy = 2547.2574 kcal/mol (2539.4712 without restraints) Performing minimization step: 4199. Total energy = 2546.8485 kcal/mol (2539.0644 without restraints) Performing minimization step: 4200. Total energy = 2546.4401 kcal/mol (2538.6582 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 2546.0322 kcal/mol (2538.2523 without restraints) Performing minimization step: 4202. Total energy = 2545.6241 kcal/mol (2537.8462 without restraints) Performing minimization step: 4203. Total energy = 2545.2163 kcal/mol (2537.4405 without restraints) Performing minimization step: 4204. Total energy = 2544.8092 kcal/mol (2537.0355 without restraints) Performing minimization step: 4205. Total energy = 2544.4021 kcal/mol (2536.6307 without restraints) Performing minimization step: 4206. Total energy = 2543.9950 kcal/mol (2536.2255 without restraints) Performing minimization step: 4207. Total energy = 2543.5882 kcal/mol (2535.8208 without restraints) Performing minimization step: 4208. Total energy = 2543.1816 kcal/mol (2535.4163 without restraints) Performing minimization step: 4209. Total energy = 2542.7755 kcal/mol (2535.0123 without restraints) Performing minimization step: 4210. Total energy = 2542.3699 kcal/mol (2534.6089 without restraints) Performing minimization step: 4211. Total energy = 2541.9639 kcal/mol (2534.2049 without restraints) Performing minimization step: 4212. Total energy = 2541.5580 kcal/mol (2533.8011 without restraints) Performing minimization step: 4213. Total energy = 2541.1525 kcal/mol (2533.3976 without restraints) Performing minimization step: 4214. Total energy = 2540.7477 kcal/mol (2532.9951 without restraints) Performing minimization step: 4215. Total energy = 2540.3428 kcal/mol (2532.5921 without restraints) Performing minimization step: 4216. Total energy = 2539.9392 kcal/mol (2532.1906 without restraints) Performing minimization step: 4217. Total energy = 2539.5345 kcal/mol (2531.7879 without restraints) Performing minimization step: 4218. Total energy = 2539.1300 kcal/mol (2531.3855 without restraints) Performing minimization step: 4219. Total energy = 2538.7261 kcal/mol (2530.9836 without restraints) Performing minimization step: 4220. Total energy = 2538.3224 kcal/mol (2530.5820 without restraints) Performing minimization step: 4221. Total energy = 2537.9188 kcal/mol (2530.1805 without restraints) Performing minimization step: 4222. Total energy = 2537.5154 kcal/mol (2529.7792 without restraints) Performing minimization step: 4223. Total energy = 2537.1128 kcal/mol (2529.3786 without restraints) Performing minimization step: 4224. Total energy = 2536.7096 kcal/mol (2528.9775 without restraints) Performing minimization step: 4225. Total energy = 2536.3067 kcal/mol (2528.5767 without restraints) Performing minimization step: 4226. Total energy = 2535.9044 kcal/mol (2528.1764 without restraints) Performing minimization step: 4227. Total energy = 2535.5021 kcal/mol (2527.7762 without restraints) Performing minimization step: 4228. Total energy = 2535.0997 kcal/mol (2527.3758 without restraints) Performing minimization step: 4229. Total energy = 2534.6973 kcal/mol (2526.9756 without restraints) Performing minimization step: 4230. Total energy = 2534.2959 kcal/mol (2526.5762 without restraints) Performing minimization step: 4231. Total energy = 2533.8945 kcal/mol (2526.1768 without restraints) Performing minimization step: 4232. Total energy = 2533.4931 kcal/mol (2525.7776 without restraints) Performing minimization step: 4233. Total energy = 2533.0924 kcal/mol (2525.3789 without restraints) Performing minimization step: 4234. Total energy = 2532.6916 kcal/mol (2524.9802 without restraints) Performing minimization step: 4235. Total energy = 2532.2911 kcal/mol (2524.5817 without restraints) Performing minimization step: 4236. Total energy = 2531.8914 kcal/mol (2524.1840 without restraints) Performing minimization step: 4237. Total energy = 2531.4917 kcal/mol (2523.7864 without restraints) Performing minimization step: 4238. Total energy = 2531.0921 kcal/mol (2523.3888 without restraints) Performing minimization step: 4239. Total energy = 2530.6924 kcal/mol (2522.9912 without restraints) Performing minimization step: 4240. Total energy = 2530.2935 kcal/mol (2522.5943 without restraints) Performing minimization step: 4241. Total energy = 2529.8946 kcal/mol (2522.1976 without restraints) Performing minimization step: 4242. Total energy = 2529.4960 kcal/mol (2521.8009 without restraints) Performing minimization step: 4243. Total energy = 2529.0973 kcal/mol (2521.4043 without restraints) Performing minimization step: 4244. Total energy = 2528.6989 kcal/mol (2521.0079 without restraints) Performing minimization step: 4245. Total energy = 2528.3008 kcal/mol (2520.6118 without restraints) Performing minimization step: 4246. Total energy = 2527.9028 kcal/mol (2520.2160 without restraints) Performing minimization step: 4247. Total energy = 2527.5052 kcal/mol (2519.8203 without restraints) Performing minimization step: 4248. Total energy = 2527.1074 kcal/mol (2519.4246 without restraints) Performing minimization step: 4249. Total energy = 2526.7100 kcal/mol (2519.0292 without restraints) Performing minimization step: 4250. Total energy = 2526.3125 kcal/mol (2518.6337 without restraints) Performing minimization step: 4251. Total energy = 2525.9157 kcal/mol (2518.2389 without restraints) Performing minimization step: 4252. Total energy = 2525.5187 kcal/mol (2517.8440 without restraints) Performing minimization step: 4253. Total energy = 2525.1222 kcal/mol (2517.4495 without restraints) Performing minimization step: 4254. Total energy = 2524.7259 kcal/mol (2517.0553 without restraints) Performing minimization step: 4255. Total energy = 2524.3295 kcal/mol (2516.6610 without restraints) Performing minimization step: 4256. Total energy = 2523.9333 kcal/mol (2516.2668 without restraints) Performing minimization step: 4257. Total energy = 2523.5377 kcal/mol (2515.8732 without restraints) Performing minimization step: 4258. Total energy = 2523.1425 kcal/mol (2515.4803 without restraints) Performing minimization step: 4259. Total energy = 2522.7478 kcal/mol (2515.0874 without restraints) Performing minimization step: 4260. Total energy = 2522.3526 kcal/mol (2514.6942 without restraints) Performing minimization step: 4261. Total energy = 2521.9579 kcal/mol (2514.3015 without restraints) Performing minimization step: 4262. Total energy = 2521.5637 kcal/mol (2513.9093 without restraints) Performing minimization step: 4263. Total energy = 2521.1695 kcal/mol (2513.5171 without restraints) Performing minimization step: 4264. Total energy = 2520.7749 kcal/mol (2513.1245 without restraints) Performing minimization step: 4265. Total energy = 2520.3806 kcal/mol (2512.7323 without restraints) Performing minimization step: 4266. Total energy = 2519.9868 kcal/mol (2512.3405 without restraints) Performing minimization step: 4267. Total energy = 2519.5934 kcal/mol (2511.9493 without restraints) Performing minimization step: 4268. Total energy = 2519.2002 kcal/mol (2511.5578 without restraints) Performing minimization step: 4269. Total energy = 2518.8074 kcal/mol (2511.1672 without restraints) Performing minimization step: 4270. Total energy = 2518.4146 kcal/mol (2510.7764 without restraints) Performing minimization step: 4271. Total energy = 2518.0229 kcal/mol (2510.3866 without restraints) Performing minimization step: 4272. Total energy = 2517.6305 kcal/mol (2509.9962 without restraints) Performing minimization step: 4273. Total energy = 2517.2387 kcal/mol (2509.6067 without restraints) Performing minimization step: 4274. Total energy = 2516.8473 kcal/mol (2509.2171 without restraints) Performing minimization step: 4275. Total energy = 2516.4553 kcal/mol (2508.8271 without restraints) Performing minimization step: 4276. Total energy = 2516.0638 kcal/mol (2508.4377 without restraints) Performing minimization step: 4277. Total energy = 2515.6730 kcal/mol (2508.0489 without restraints) Performing minimization step: 4278. Total energy = 2515.2829 kcal/mol (2507.6610 without restraints) Performing minimization step: 4279. Total energy = 2514.8922 kcal/mol (2507.2721 without restraints) Performing minimization step: 4280. Total energy = 2514.5016 kcal/mol (2506.8836 without restraints) Performing minimization step: 4281. Total energy = 2514.1115 kcal/mol (2506.4953 without restraints) Performing minimization step: 4282. Total energy = 2513.7213 kcal/mol (2506.1071 without restraints) Performing minimization step: 4283. Total energy = 2513.3314 kcal/mol (2505.7193 without restraints) Performing minimization step: 4284. Total energy = 2512.9421 kcal/mol (2505.3321 without restraints) Performing minimization step: 4285. Total energy = 2512.5526 kcal/mol (2504.9444 without restraints) Performing minimization step: 4286. Total energy = 2512.1629 kcal/mol (2504.5568 without restraints) Performing minimization step: 4287. Total energy = 2511.7738 kcal/mol (2504.1698 without restraints) Performing minimization step: 4288. Total energy = 2511.3849 kcal/mol (2503.7828 without restraints) Performing minimization step: 4289. Total energy = 2510.9967 kcal/mol (2503.3967 without restraints) Performing minimization step: 4290. Total energy = 2510.6085 kcal/mol (2503.0103 without restraints) Performing minimization step: 4291. Total energy = 2510.2202 kcal/mol (2502.6240 without restraints) Performing minimization step: 4292. Total energy = 2509.8322 kcal/mol (2502.2380 without restraints) Performing minimization step: 4293. Total energy = 2509.4444 kcal/mol (2501.8522 without restraints) Performing minimization step: 4294. Total energy = 2509.0567 kcal/mol (2501.4665 without restraints) Performing minimization step: 4295. Total energy = 2508.6697 kcal/mol (2501.0815 without restraints) Performing minimization step: 4296. Total energy = 2508.2825 kcal/mol (2500.6962 without restraints) Performing minimization step: 4297. Total energy = 2507.8953 kcal/mol (2500.3111 without restraints) Performing minimization step: 4298. Total energy = 2507.5084 kcal/mol (2499.9261 without restraints) Performing minimization step: 4299. Total energy = 2507.1217 kcal/mol (2499.5414 without restraints) Performing minimization step: 4300. Total energy = 2506.7356 kcal/mol (2499.1576 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 2506.3498 kcal/mol (2498.7735 without restraints) Performing minimization step: 4302. Total energy = 2505.9638 kcal/mol (2498.3894 without restraints) Performing minimization step: 4303. Total energy = 2505.5789 kcal/mol (2498.0066 without restraints) Performing minimization step: 4304. Total energy = 2505.1934 kcal/mol (2497.6229 without restraints) Performing minimization step: 4305. Total energy = 2504.8080 kcal/mol (2497.2395 without restraints) Performing minimization step: 4306. Total energy = 2504.4229 kcal/mol (2496.8564 without restraints) Performing minimization step: 4307. Total energy = 2504.0379 kcal/mol (2496.4734 without restraints) Performing minimization step: 4308. Total energy = 2503.6533 kcal/mol (2496.0908 without restraints) Performing minimization step: 4309. Total energy = 2503.2690 kcal/mol (2495.7086 without restraints) Performing minimization step: 4310. Total energy = 2502.8851 kcal/mol (2495.3266 without restraints) Performing minimization step: 4311. Total energy = 2502.5010 kcal/mol (2494.9444 without restraints) Performing minimization step: 4312. Total energy = 2502.1173 kcal/mol (2494.5627 without restraints) Performing minimization step: 4313. Total energy = 2501.7337 kcal/mol (2494.1810 without restraints) Performing minimization step: 4314. Total energy = 2501.3507 kcal/mol (2493.8000 without restraints) Performing minimization step: 4315. Total energy = 2500.9674 kcal/mol (2493.4186 without restraints) Performing minimization step: 4316. Total energy = 2500.5845 kcal/mol (2493.0376 without restraints) Performing minimization step: 4317. Total energy = 2500.2019 kcal/mol (2492.6570 without restraints) Performing minimization step: 4318. Total energy = 2499.8192 kcal/mol (2492.2764 without restraints) Performing minimization step: 4319. Total energy = 2499.4370 kcal/mol (2491.8962 without restraints) Performing minimization step: 4320. Total energy = 2499.0547 kcal/mol (2491.5158 without restraints) Performing minimization step: 4321. Total energy = 2498.6724 kcal/mol (2491.1354 without restraints) Performing minimization step: 4322. Total energy = 2498.2908 kcal/mol (2490.7557 without restraints) Performing minimization step: 4323. Total energy = 2497.9095 kcal/mol (2490.3763 without restraints) Performing minimization step: 4324. Total energy = 2497.5281 kcal/mol (2489.9970 without restraints) Performing minimization step: 4325. Total energy = 2497.1468 kcal/mol (2489.6176 without restraints) Performing minimization step: 4326. Total energy = 2496.7657 kcal/mol (2489.2384 without restraints) Performing minimization step: 4327. Total energy = 2496.3848 kcal/mol (2488.8595 without restraints) Performing minimization step: 4328. Total energy = 2496.0042 kcal/mol (2488.4808 without restraints) Performing minimization step: 4329. Total energy = 2495.6238 kcal/mol (2488.1024 without restraints) Performing minimization step: 4330. Total energy = 2495.2436 kcal/mol (2487.7244 without restraints) Performing minimization step: 4331. Total energy = 2494.8637 kcal/mol (2487.3462 without restraints) Performing minimization step: 4332. Total energy = 2494.4844 kcal/mol (2486.9691 without restraints) Performing minimization step: 4333. Total energy = 2494.1049 kcal/mol (2486.5913 without restraints) Performing minimization step: 4334. Total energy = 2493.7249 kcal/mol (2486.2132 without restraints) Performing minimization step: 4335. Total energy = 2493.3460 kcal/mol (2485.8362 without restraints) Performing minimization step: 4336. Total energy = 2492.9670 kcal/mol (2485.4595 without restraints) Performing minimization step: 4337. Total energy = 2492.5885 kcal/mol (2485.0826 without restraints) Performing minimization step: 4338. Total energy = 2492.2098 kcal/mol (2484.7058 without restraints) Performing minimization step: 4339. Total energy = 2491.8318 kcal/mol (2484.3298 without restraints) Performing minimization step: 4340. Total energy = 2491.4540 kcal/mol (2483.9540 without restraints) Performing minimization step: 4341. Total energy = 2491.0758 kcal/mol (2483.5777 without restraints) Performing minimization step: 4342. Total energy = 2490.6983 kcal/mol (2483.2023 without restraints) Performing minimization step: 4343. Total energy = 2490.3211 kcal/mol (2482.8268 without restraints) Performing minimization step: 4344. Total energy = 2489.9440 kcal/mol (2482.4516 without restraints) Performing minimization step: 4345. Total energy = 2489.5670 kcal/mol (2482.0766 without restraints) Performing minimization step: 4346. Total energy = 2489.1904 kcal/mol (2481.7021 without restraints) Performing minimization step: 4347. Total energy = 2488.8140 kcal/mol (2481.3275 without restraints) Performing minimization step: 4348. Total energy = 2488.4374 kcal/mol (2480.9527 without restraints) Performing minimization step: 4349. Total energy = 2488.0611 kcal/mol (2480.5783 without restraints) Performing minimization step: 4350. Total energy = 2487.6847 kcal/mol (2480.2039 without restraints) Performing minimization step: 4351. Total energy = 2487.3087 kcal/mol (2479.8298 without restraints) Performing minimization step: 4352. Total energy = 2486.9327 kcal/mol (2479.4558 without restraints) Performing minimization step: 4353. Total energy = 2486.5568 kcal/mol (2479.0820 without restraints) Performing minimization step: 4354. Total energy = 2486.1807 kcal/mol (2478.7075 without restraints) Performing minimization step: 4355. Total energy = 2485.8059 kcal/mol (2478.3347 without restraints) Performing minimization step: 4356. Total energy = 2485.4307 kcal/mol (2477.9614 without restraints) Performing minimization step: 4357. Total energy = 2485.0554 kcal/mol (2477.5880 without restraints) Performing minimization step: 4358. Total energy = 2484.6806 kcal/mol (2477.2153 without restraints) Performing minimization step: 4359. Total energy = 2484.3064 kcal/mol (2476.8429 without restraints) Performing minimization step: 4360. Total energy = 2483.9319 kcal/mol (2476.4702 without restraints) Performing minimization step: 4361. Total energy = 2483.5581 kcal/mol (2476.0982 without restraints) Performing minimization step: 4362. Total energy = 2483.1839 kcal/mol (2475.7260 without restraints) Performing minimization step: 4363. Total energy = 2482.8100 kcal/mol (2475.3540 without restraints) Performing minimization step: 4364. Total energy = 2482.4364 kcal/mol (2474.9824 without restraints) Performing minimization step: 4365. Total energy = 2482.0634 kcal/mol (2474.6113 without restraints) Performing minimization step: 4366. Total energy = 2481.6901 kcal/mol (2474.2400 without restraints) Performing minimization step: 4367. Total energy = 2481.3171 kcal/mol (2473.8687 without restraints) Performing minimization step: 4368. Total energy = 2480.9440 kcal/mol (2473.4976 without restraints) Performing minimization step: 4369. Total energy = 2480.5714 kcal/mol (2473.1268 without restraints) Performing minimization step: 4370. Total energy = 2480.1989 kcal/mol (2472.7563 without restraints) Performing minimization step: 4371. Total energy = 2479.8270 kcal/mol (2472.3865 without restraints) Performing minimization step: 4372. Total energy = 2479.4552 kcal/mol (2472.0164 without restraints) Performing minimization step: 4373. Total energy = 2479.0834 kcal/mol (2471.6464 without restraints) Performing minimization step: 4374. Total energy = 2478.7120 kcal/mol (2471.2770 without restraints) Performing minimization step: 4375. Total energy = 2478.3407 kcal/mol (2470.9076 without restraints) Performing minimization step: 4376. Total energy = 2477.9696 kcal/mol (2470.5386 without restraints) Performing minimization step: 4377. Total energy = 2477.5987 kcal/mol (2470.1694 without restraints) Performing minimization step: 4378. Total energy = 2477.2277 kcal/mol (2469.8003 without restraints) Performing minimization step: 4379. Total energy = 2476.8568 kcal/mol (2469.4312 without restraints) Performing minimization step: 4380. Total energy = 2476.4868 kcal/mol (2469.0632 without restraints) Performing minimization step: 4381. Total energy = 2476.1163 kcal/mol (2468.6945 without restraints) Performing minimization step: 4382. Total energy = 2475.7470 kcal/mol (2468.3271 without restraints) Performing minimization step: 4383. Total energy = 2475.3769 kcal/mol (2467.9588 without restraints) Performing minimization step: 4384. Total energy = 2475.0070 kcal/mol (2467.5909 without restraints) Performing minimization step: 4385. Total energy = 2474.6373 kcal/mol (2467.2230 without restraints) Performing minimization step: 4386. Total energy = 2474.2676 kcal/mol (2466.8552 without restraints) Performing minimization step: 4387. Total energy = 2473.8983 kcal/mol (2466.4878 without restraints) Performing minimization step: 4388. Total energy = 2473.5294 kcal/mol (2466.1207 without restraints) Performing minimization step: 4389. Total energy = 2473.1609 kcal/mol (2465.7541 without restraints) Performing minimization step: 4390. Total energy = 2472.7922 kcal/mol (2465.3873 without restraints) Performing minimization step: 4391. Total energy = 2472.4235 kcal/mol (2465.0205 without restraints) Performing minimization step: 4392. Total energy = 2472.0552 kcal/mol (2464.6541 without restraints) Performing minimization step: 4393. Total energy = 2471.6869 kcal/mol (2464.2876 without restraints) Performing minimization step: 4394. Total energy = 2471.3185 kcal/mol (2463.9211 without restraints) Performing minimization step: 4395. Total energy = 2470.9506 kcal/mol (2463.5551 without restraints) Performing minimization step: 4396. Total energy = 2470.5831 kcal/mol (2463.1894 without restraints) Performing minimization step: 4397. Total energy = 2470.2155 kcal/mol (2462.8236 without restraints) Performing minimization step: 4398. Total energy = 2469.8481 kcal/mol (2462.4581 without restraints) Performing minimization step: 4399. Total energy = 2469.4813 kcal/mol (2462.0932 without restraints) Performing minimization step: 4400. Total energy = 2469.1144 kcal/mol (2461.7282 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 2468.7479 kcal/mol (2461.3635 without restraints) Performing minimization step: 4402. Total energy = 2468.3814 kcal/mol (2460.9989 without restraints) Performing minimization step: 4403. Total energy = 2468.0149 kcal/mol (2460.6342 without restraints) Performing minimization step: 4404. Total energy = 2467.6485 kcal/mol (2460.2697 without restraints) Performing minimization step: 4405. Total energy = 2467.2826 kcal/mol (2459.9056 without restraints) Performing minimization step: 4406. Total energy = 2466.9171 kcal/mol (2459.5420 without restraints) Performing minimization step: 4407. Total energy = 2466.5515 kcal/mol (2459.1782 without restraints) Performing minimization step: 4408. Total energy = 2466.1858 kcal/mol (2458.8144 without restraints) Performing minimization step: 4409. Total energy = 2465.8210 kcal/mol (2458.4514 without restraints) Performing minimization step: 4410. Total energy = 2465.4561 kcal/mol (2458.0884 without restraints) Performing minimization step: 4411. Total energy = 2465.0913 kcal/mol (2457.7256 without restraints) Performing minimization step: 4412. Total energy = 2464.7263 kcal/mol (2457.3623 without restraints) Performing minimization step: 4413. Total energy = 2464.3614 kcal/mol (2456.9992 without restraints) Performing minimization step: 4414. Total energy = 2463.9968 kcal/mol (2456.6365 without restraints) Performing minimization step: 4415. Total energy = 2463.6322 kcal/mol (2456.2737 without restraints) Performing minimization step: 4416. Total energy = 2463.2680 kcal/mol (2455.9115 without restraints) Performing minimization step: 4417. Total energy = 2462.9040 kcal/mol (2455.5492 without restraints) Performing minimization step: 4418. Total energy = 2462.5404 kcal/mol (2455.1875 without restraints) Performing minimization step: 4419. Total energy = 2462.1771 kcal/mol (2454.8261 without restraints) Performing minimization step: 4420. Total energy = 2461.8139 kcal/mol (2454.4646 without restraints) Performing minimization step: 4421. Total energy = 2461.4511 kcal/mol (2454.1038 without restraints) Performing minimization step: 4422. Total energy = 2461.0881 kcal/mol (2453.7425 without restraints) Performing minimization step: 4423. Total energy = 2460.7249 kcal/mol (2453.3811 without restraints) Performing minimization step: 4424. Total energy = 2460.3620 kcal/mol (2453.0201 without restraints) Performing minimization step: 4425. Total energy = 2459.9993 kcal/mol (2452.6592 without restraints) Performing minimization step: 4426. Total energy = 2459.6374 kcal/mol (2452.2992 without restraints) Performing minimization step: 4427. Total energy = 2459.2754 kcal/mol (2451.9389 without restraints) Performing minimization step: 4428. Total energy = 2458.9133 kcal/mol (2451.5787 without restraints) Performing minimization step: 4429. Total energy = 2458.5509 kcal/mol (2451.2182 without restraints) Performing minimization step: 4430. Total energy = 2458.1900 kcal/mol (2450.8590 without restraints) Performing minimization step: 4431. Total energy = 2457.8285 kcal/mol (2450.4994 without restraints) Performing minimization step: 4432. Total energy = 2457.4673 kcal/mol (2450.1400 without restraints) Performing minimization step: 4433. Total energy = 2457.1062 kcal/mol (2449.7807 without restraints) Performing minimization step: 4434. Total energy = 2456.7451 kcal/mol (2449.4214 without restraints) Performing minimization step: 4435. Total energy = 2456.3844 kcal/mol (2449.0627 without restraints) Performing minimization step: 4436. Total energy = 2456.0240 kcal/mol (2448.7040 without restraints) Performing minimization step: 4437. Total energy = 2455.6638 kcal/mol (2448.3458 without restraints) Performing minimization step: 4438. Total energy = 2455.3037 kcal/mol (2447.9873 without restraints) Performing minimization step: 4439. Total energy = 2454.9436 kcal/mol (2447.6290 without restraints) Performing minimization step: 4440. Total energy = 2454.5829 kcal/mol (2447.2700 without restraints) Performing minimization step: 4441. Total energy = 2454.2231 kcal/mol (2446.9123 without restraints) Performing minimization step: 4442. Total energy = 2453.8633 kcal/mol (2446.5542 without restraints) Performing minimization step: 4443. Total energy = 2453.5038 kcal/mol (2446.1964 without restraints) Performing minimization step: 4444. Total energy = 2453.1445 kcal/mol (2445.8391 without restraints) Performing minimization step: 4445. Total energy = 2452.7853 kcal/mol (2445.4816 without restraints) Performing minimization step: 4446. Total energy = 2452.4263 kcal/mol (2445.1243 without restraints) Performing minimization step: 4447. Total energy = 2452.0674 kcal/mol (2444.7674 without restraints) Performing minimization step: 4448. Total energy = 2451.7085 kcal/mol (2444.4102 without restraints) Performing minimization step: 4449. Total energy = 2451.3499 kcal/mol (2444.0533 without restraints) Performing minimization step: 4450. Total energy = 2450.9916 kcal/mol (2443.6969 without restraints) Performing minimization step: 4451. Total energy = 2450.6338 kcal/mol (2443.3409 without restraints) Performing minimization step: 4452. Total energy = 2450.2759 kcal/mol (2442.9848 without restraints) Performing minimization step: 4453. Total energy = 2449.9180 kcal/mol (2442.6287 without restraints) Performing minimization step: 4454. Total energy = 2449.5602 kcal/mol (2442.2727 without restraints) Performing minimization step: 4455. Total energy = 2449.2030 kcal/mol (2441.9173 without restraints) Performing minimization step: 4456. Total energy = 2448.8460 kcal/mol (2441.5620 without restraints) Performing minimization step: 4457. Total energy = 2448.4886 kcal/mol (2441.2064 without restraints) Performing minimization step: 4458. Total energy = 2448.1320 kcal/mol (2440.8516 without restraints) Performing minimization step: 4459. Total energy = 2447.7746 kcal/mol (2440.4960 without restraints) Performing minimization step: 4460. Total energy = 2447.4181 kcal/mol (2440.1414 without restraints) Performing minimization step: 4461. Total energy = 2447.0616 kcal/mol (2439.7866 without restraints) Performing minimization step: 4462. Total energy = 2446.7049 kcal/mol (2439.4316 without restraints) Performing minimization step: 4463. Total energy = 2446.3486 kcal/mol (2439.0772 without restraints) Performing minimization step: 4464. Total energy = 2445.9928 kcal/mol (2438.7232 without restraints) Performing minimization step: 4465. Total energy = 2445.6372 kcal/mol (2438.3693 without restraints) Performing minimization step: 4466. Total energy = 2445.2823 kcal/mol (2438.0162 without restraints) Performing minimization step: 4467. Total energy = 2444.9264 kcal/mol (2437.6620 without restraints) Performing minimization step: 4468. Total energy = 2444.5710 kcal/mol (2437.3085 without restraints) Performing minimization step: 4469. Total energy = 2444.2162 kcal/mol (2436.9554 without restraints) Performing minimization step: 4470. Total energy = 2443.8606 kcal/mol (2436.6017 without restraints) Performing minimization step: 4471. Total energy = 2443.5057 kcal/mol (2436.2485 without restraints) Performing minimization step: 4472. Total energy = 2443.1507 kcal/mol (2435.8953 without restraints) Performing minimization step: 4473. Total energy = 2442.7957 kcal/mol (2435.5421 without restraints) Performing minimization step: 4474. Total energy = 2442.4411 kcal/mol (2435.1892 without restraints) Performing minimization step: 4475. Total energy = 2442.0871 kcal/mol (2434.8370 without restraints) Performing minimization step: 4476. Total energy = 2441.7328 kcal/mol (2434.4844 without restraints) Performing minimization step: 4477. Total energy = 2441.3789 kcal/mol (2434.1324 without restraints) Performing minimization step: 4478. Total energy = 2441.0250 kcal/mol (2433.7801 without restraints) Performing minimization step: 4479. Total energy = 2440.6711 kcal/mol (2433.4280 without restraints) Performing minimization step: 4480. Total energy = 2440.3173 kcal/mol (2433.0760 without restraints) Performing minimization step: 4481. Total energy = 2439.9639 kcal/mol (2432.7244 without restraints) Performing minimization step: 4482. Total energy = 2439.6105 kcal/mol (2432.3728 without restraints) Performing minimization step: 4483. Total energy = 2439.2575 kcal/mol (2432.0216 without restraints) Performing minimization step: 4484. Total energy = 2438.9043 kcal/mol (2431.6700 without restraints) Performing minimization step: 4485. Total energy = 2438.5515 kcal/mol (2431.3190 without restraints) Performing minimization step: 4486. Total energy = 2438.1991 kcal/mol (2430.9684 without restraints) Performing minimization step: 4487. Total energy = 2437.8465 kcal/mol (2430.6175 without restraints) Performing minimization step: 4488. Total energy = 2437.4943 kcal/mol (2430.2671 without restraints) Performing minimization step: 4489. Total energy = 2437.1419 kcal/mol (2429.9164 without restraints) Performing minimization step: 4490. Total energy = 2436.7901 kcal/mol (2429.5664 without restraints) Performing minimization step: 4491. Total energy = 2436.4383 kcal/mol (2429.2163 without restraints) Performing minimization step: 4492. Total energy = 2436.0863 kcal/mol (2428.8660 without restraints) Performing minimization step: 4493. Total energy = 2435.7352 kcal/mol (2428.5167 without restraints) Performing minimization step: 4494. Total energy = 2435.3837 kcal/mol (2428.1670 without restraints) Performing minimization step: 4495. Total energy = 2435.0325 kcal/mol (2427.8174 without restraints) Performing minimization step: 4496. Total energy = 2434.6811 kcal/mol (2427.4679 without restraints) Performing minimization step: 4497. Total energy = 2434.3300 kcal/mol (2427.1184 without restraints) Performing minimization step: 4498. Total energy = 2433.9791 kcal/mol (2426.7693 without restraints) Performing minimization step: 4499. Total energy = 2433.6283 kcal/mol (2426.4202 without restraints) Performing minimization step: 4500. Total energy = 2433.2773 kcal/mol (2426.0710 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 2432.9274 kcal/mol (2425.7228 without restraints) Performing minimization step: 4502. Total energy = 2432.5768 kcal/mol (2425.3739 without restraints) Performing minimization step: 4503. Total energy = 2432.2267 kcal/mol (2425.0256 without restraints) Performing minimization step: 4504. Total energy = 2431.8765 kcal/mol (2424.6772 without restraints) Performing minimization step: 4505. Total energy = 2431.5267 kcal/mol (2424.3293 without restraints) Performing minimization step: 4506. Total energy = 2431.1771 kcal/mol (2423.9812 without restraints) Performing minimization step: 4507. Total energy = 2430.8279 kcal/mol (2423.6338 without restraints) Performing minimization step: 4508. Total energy = 2430.4784 kcal/mol (2423.2859 without restraints) Performing minimization step: 4509. Total energy = 2430.1289 kcal/mol (2422.9382 without restraints) Performing minimization step: 4510. Total energy = 2429.7798 kcal/mol (2422.5908 without restraints) Performing minimization step: 4511. Total energy = 2429.4312 kcal/mol (2422.2440 without restraints) Performing minimization step: 4512. Total energy = 2429.0823 kcal/mol (2421.8967 without restraints) Performing minimization step: 4513. Total energy = 2428.7337 kcal/mol (2421.5498 without restraints) Performing minimization step: 4514. Total energy = 2428.3848 kcal/mol (2421.2027 without restraints) Performing minimization step: 4515. Total energy = 2428.0360 kcal/mol (2420.8556 without restraints) Performing minimization step: 4516. Total energy = 2427.6876 kcal/mol (2420.5089 without restraints) Performing minimization step: 4517. Total energy = 2427.3393 kcal/mol (2420.1623 without restraints) Performing minimization step: 4518. Total energy = 2426.9914 kcal/mol (2419.8161 without restraints) Performing minimization step: 4519. Total energy = 2426.6436 kcal/mol (2419.4701 without restraints) Performing minimization step: 4520. Total energy = 2426.2958 kcal/mol (2419.1239 without restraints) Performing minimization step: 4521. Total energy = 2425.9481 kcal/mol (2418.7779 without restraints) Performing minimization step: 4522. Total energy = 2425.6008 kcal/mol (2418.4324 without restraints) Performing minimization step: 4523. Total energy = 2425.2536 kcal/mol (2418.0870 without restraints) Performing minimization step: 4524. Total energy = 2424.9066 kcal/mol (2417.7416 without restraints) Performing minimization step: 4525. Total energy = 2424.5594 kcal/mol (2417.3960 without restraints) Performing minimization step: 4526. Total energy = 2424.2129 kcal/mol (2417.0512 without restraints) Performing minimization step: 4527. Total energy = 2423.8660 kcal/mol (2416.7060 without restraints) Performing minimization step: 4528. Total energy = 2423.5191 kcal/mol (2416.3609 without restraints) Performing minimization step: 4529. Total energy = 2423.1731 kcal/mol (2416.0166 without restraints) Performing minimization step: 4530. Total energy = 2422.8267 kcal/mol (2415.6720 without restraints) Performing minimization step: 4531. Total energy = 2422.4805 kcal/mol (2415.3274 without restraints) Performing minimization step: 4532. Total energy = 2422.1340 kcal/mol (2414.9826 without restraints) Performing minimization step: 4533. Total energy = 2421.7880 kcal/mol (2414.6383 without restraints) Performing minimization step: 4534. Total energy = 2421.4421 kcal/mol (2414.2939 without restraints) Performing minimization step: 4535. Total energy = 2421.0967 kcal/mol (2413.9504 without restraints) Performing minimization step: 4536. Total energy = 2420.7510 kcal/mol (2413.6063 without restraints) Performing minimization step: 4537. Total energy = 2420.4053 kcal/mol (2413.2623 without restraints) Performing minimization step: 4538. Total energy = 2420.0596 kcal/mol (2412.9183 without restraints) Performing minimization step: 4539. Total energy = 2419.7143 kcal/mol (2412.5747 without restraints) Performing minimization step: 4540. Total energy = 2419.3692 kcal/mol (2412.2314 without restraints) Performing minimization step: 4541. Total energy = 2419.0243 kcal/mol (2411.8882 without restraints) Performing minimization step: 4542. Total energy = 2418.6803 kcal/mol (2411.5457 without restraints) Performing minimization step: 4543. Total energy = 2418.3358 kcal/mol (2411.2029 without restraints) Performing minimization step: 4544. Total energy = 2417.9912 kcal/mol (2410.8601 without restraints) Performing minimization step: 4545. Total energy = 2417.6467 kcal/mol (2410.5172 without restraints) Performing minimization step: 4546. Total energy = 2417.3023 kcal/mol (2410.1744 without restraints) Performing minimization step: 4547. Total energy = 2416.9578 kcal/mol (2409.8317 without restraints) Performing minimization step: 4548. Total energy = 2416.6137 kcal/mol (2409.4892 without restraints) Performing minimization step: 4549. Total energy = 2416.2702 kcal/mol (2409.1475 without restraints) Performing minimization step: 4550. Total energy = 2415.9268 kcal/mol (2408.8056 without restraints) Performing minimization step: 4551. Total energy = 2415.5827 kcal/mol (2408.4632 without restraints) Performing minimization step: 4552. Total energy = 2415.2390 kcal/mol (2408.1211 without restraints) Performing minimization step: 4553. Total energy = 2414.8956 kcal/mol (2407.7794 without restraints) Performing minimization step: 4554. Total energy = 2414.5523 kcal/mol (2407.4377 without restraints) Performing minimization step: 4555. Total energy = 2414.2091 kcal/mol (2407.0963 without restraints) Performing minimization step: 4556. Total energy = 2413.8660 kcal/mol (2406.7549 without restraints) Performing minimization step: 4557. Total energy = 2413.5230 kcal/mol (2406.4134 without restraints) Performing minimization step: 4558. Total energy = 2413.1799 kcal/mol (2406.0721 without restraints) Performing minimization step: 4559. Total energy = 2412.8375 kcal/mol (2405.7314 without restraints) Performing minimization step: 4560. Total energy = 2412.4948 kcal/mol (2405.3904 without restraints) Performing minimization step: 4561. Total energy = 2412.1523 kcal/mol (2405.0495 without restraints) Performing minimization step: 4562. Total energy = 2411.8103 kcal/mol (2404.7091 without restraints) Performing minimization step: 4563. Total energy = 2411.4678 kcal/mol (2404.3684 without restraints) Performing minimization step: 4564. Total energy = 2411.1259 kcal/mol (2404.0280 without restraints) Performing minimization step: 4565. Total energy = 2410.7839 kcal/mol (2403.6878 without restraints) Performing minimization step: 4566. Total energy = 2410.4418 kcal/mol (2403.3472 without restraints) Performing minimization step: 4567. Total energy = 2410.1002 kcal/mol (2403.0072 without restraints) Performing minimization step: 4568. Total energy = 2409.7586 kcal/mol (2402.6673 without restraints) Performing minimization step: 4569. Total energy = 2409.4165 kcal/mol (2402.3268 without restraints) Performing minimization step: 4570. Total energy = 2409.0752 kcal/mol (2401.9871 without restraints) Performing minimization step: 4571. Total energy = 2408.7340 kcal/mol (2401.6477 without restraints) Performing minimization step: 4572. Total energy = 2408.3931 kcal/mol (2401.3083 without restraints) Performing minimization step: 4573. Total energy = 2408.0522 kcal/mol (2400.9692 without restraints) Performing minimization step: 4574. Total energy = 2407.7117 kcal/mol (2400.6303 without restraints) Performing minimization step: 4575. Total energy = 2407.3709 kcal/mol (2400.2911 without restraints) Performing minimization step: 4576. Total energy = 2407.0297 kcal/mol (2399.9516 without restraints) Performing minimization step: 4577. Total energy = 2406.6892 kcal/mol (2399.6128 without restraints) Performing minimization step: 4578. Total energy = 2406.3487 kcal/mol (2399.2738 without restraints) Performing minimization step: 4579. Total energy = 2406.0083 kcal/mol (2398.9350 without restraints) Performing minimization step: 4580. Total energy = 2405.6681 kcal/mol (2398.5962 without restraints) Performing minimization step: 4581. Total energy = 2405.3275 kcal/mol (2398.2575 without restraints) Performing minimization step: 4582. Total energy = 2404.9873 kcal/mol (2397.9189 without restraints) Performing minimization step: 4583. Total energy = 2404.6473 kcal/mol (2397.5806 without restraints) Performing minimization step: 4584. Total energy = 2404.3076 kcal/mol (2397.2424 without restraints) Performing minimization step: 4585. Total energy = 2403.9684 kcal/mol (2396.9048 without restraints) Performing minimization step: 4586. Total energy = 2403.6282 kcal/mol (2396.5663 without restraints) Performing minimization step: 4587. Total energy = 2403.2886 kcal/mol (2396.2283 without restraints) Performing minimization step: 4588. Total energy = 2402.9488 kcal/mol (2395.8901 without restraints) Performing minimization step: 4589. Total energy = 2402.6101 kcal/mol (2395.5532 without restraints) Performing minimization step: 4590. Total energy = 2402.2705 kcal/mol (2395.2150 without restraints) Performing minimization step: 4591. Total energy = 2401.9312 kcal/mol (2394.8775 without restraints) Performing minimization step: 4592. Total energy = 2401.5922 kcal/mol (2394.5402 without restraints) Performing minimization step: 4593. Total energy = 2401.2533 kcal/mol (2394.2027 without restraints) Performing minimization step: 4594. Total energy = 2400.9146 kcal/mol (2393.8658 without restraints) Performing minimization step: 4595. Total energy = 2400.5762 kcal/mol (2393.5288 without restraints) Performing minimization step: 4596. Total energy = 2400.2373 kcal/mol (2393.1915 without restraints) Performing minimization step: 4597. Total energy = 2399.8985 kcal/mol (2392.8545 without restraints) Performing minimization step: 4598. Total energy = 2399.5604 kcal/mol (2392.5178 without restraints) Performing minimization step: 4599. Total energy = 2399.2220 kcal/mol (2392.1811 without restraints) Performing minimization step: 4600. Total energy = 2398.8839 kcal/mol (2391.8445 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 2398.5459 kcal/mol (2391.5081 without restraints) Performing minimization step: 4602. Total energy = 2398.2077 kcal/mol (2391.1715 without restraints) Performing minimization step: 4603. Total energy = 2397.8698 kcal/mol (2390.8352 without restraints) Performing minimization step: 4604. Total energy = 2397.5321 kcal/mol (2390.4991 without restraints) Performing minimization step: 4605. Total energy = 2397.1944 kcal/mol (2390.1631 without restraints) Performing minimization step: 4606. Total energy = 2396.8566 kcal/mol (2389.8269 without restraints) Performing minimization step: 4607. Total energy = 2396.5190 kcal/mol (2389.4908 without restraints) Performing minimization step: 4608. Total energy = 2396.1818 kcal/mol (2389.1552 without restraints) Performing minimization step: 4609. Total energy = 2395.8446 kcal/mol (2388.8196 without restraints) Performing minimization step: 4610. Total energy = 2395.5075 kcal/mol (2388.4842 without restraints) Performing minimization step: 4611. Total energy = 2395.1703 kcal/mol (2388.1485 without restraints) Performing minimization step: 4612. Total energy = 2394.8325 kcal/mol (2387.8122 without restraints) Performing minimization step: 4613. Total energy = 2394.4954 kcal/mol (2387.4768 without restraints) Performing minimization step: 4614. Total energy = 2394.1585 kcal/mol (2387.1415 without restraints) Performing minimization step: 4615. Total energy = 2393.8215 kcal/mol (2386.8060 without restraints) Performing minimization step: 4616. Total energy = 2393.4849 kcal/mol (2386.4709 without restraints) Performing minimization step: 4617. Total energy = 2393.1484 kcal/mol (2386.1362 without restraints) Performing minimization step: 4618. Total energy = 2392.8118 kcal/mol (2385.8011 without restraints) Performing minimization step: 4619. Total energy = 2392.4752 kcal/mol (2385.4659 without restraints) Performing minimization step: 4620. Total energy = 2392.1386 kcal/mol (2385.1309 without restraints) Performing minimization step: 4621. Total energy = 2391.8022 kcal/mol (2384.7962 without restraints) Performing minimization step: 4622. Total energy = 2391.4663 kcal/mol (2384.4618 without restraints) Performing minimization step: 4623. Total energy = 2391.1303 kcal/mol (2384.1274 without restraints) Performing minimization step: 4624. Total energy = 2390.7943 kcal/mol (2383.7929 without restraints) Performing minimization step: 4625. Total energy = 2390.4587 kcal/mol (2383.4591 without restraints) Performing minimization step: 4626. Total energy = 2390.1231 kcal/mol (2383.1249 without restraints) Performing minimization step: 4627. Total energy = 2389.7870 kcal/mol (2382.7904 without restraints) Performing minimization step: 4628. Total energy = 2389.4515 kcal/mol (2382.4564 without restraints) Performing minimization step: 4629. Total energy = 2389.1162 kcal/mol (2382.1229 without restraints) Performing minimization step: 4630. Total energy = 2388.7813 kcal/mol (2381.7893 without restraints) Performing minimization step: 4631. Total energy = 2388.4459 kcal/mol (2381.4555 without restraints) Performing minimization step: 4632. Total energy = 2388.1104 kcal/mol (2381.1216 without restraints) Performing minimization step: 4633. Total energy = 2387.7752 kcal/mol (2380.7880 without restraints) Performing minimization step: 4634. Total energy = 2387.4402 kcal/mol (2380.4544 without restraints) Performing minimization step: 4635. Total energy = 2387.1048 kcal/mol (2380.1206 without restraints) Performing minimization step: 4636. Total energy = 2386.7696 kcal/mol (2379.7870 without restraints) Performing minimization step: 4637. Total energy = 2386.4346 kcal/mol (2379.4535 without restraints) Performing minimization step: 4638. Total energy = 2386.0998 kcal/mol (2379.1203 without restraints) Performing minimization step: 4639. Total energy = 2385.7652 kcal/mol (2378.7874 without restraints) Performing minimization step: 4640. Total energy = 2385.4308 kcal/mol (2378.4545 without restraints) Performing minimization step: 4641. Total energy = 2385.0962 kcal/mol (2378.1213 without restraints) Performing minimization step: 4642. Total energy = 2384.7617 kcal/mol (2377.7883 without restraints) Performing minimization step: 4643. Total energy = 2384.4270 kcal/mol (2377.4552 without restraints) Performing minimization step: 4644. Total energy = 2384.0927 kcal/mol (2377.1225 without restraints) Performing minimization step: 4645. Total energy = 2383.7582 kcal/mol (2376.7895 without restraints) Performing minimization step: 4646. Total energy = 2383.4240 kcal/mol (2376.4568 without restraints) Performing minimization step: 4647. Total energy = 2383.0897 kcal/mol (2376.1240 without restraints) Performing minimization step: 4648. Total energy = 2382.7554 kcal/mol (2375.7912 without restraints) Performing minimization step: 4649. Total energy = 2382.4212 kcal/mol (2375.4586 without restraints) Performing minimization step: 4650. Total energy = 2382.0870 kcal/mol (2375.1259 without restraints) Performing minimization step: 4651. Total energy = 2381.7531 kcal/mol (2374.7935 without restraints) Performing minimization step: 4652. Total energy = 2381.4190 kcal/mol (2374.4609 without restraints) Performing minimization step: 4653. Total energy = 2381.0850 kcal/mol (2374.1285 without restraints) Performing minimization step: 4654. Total energy = 2380.7511 kcal/mol (2373.7962 without restraints) Performing minimization step: 4655. Total energy = 2380.4178 kcal/mol (2373.4646 without restraints) Performing minimization step: 4656. Total energy = 2380.0845 kcal/mol (2373.1327 without restraints) Performing minimization step: 4657. Total energy = 2379.7510 kcal/mol (2372.8006 without restraints) Performing minimization step: 4658. Total energy = 2379.4175 kcal/mol (2372.4686 without restraints) Performing minimization step: 4659. Total energy = 2379.0836 kcal/mol (2372.1361 without restraints) Performing minimization step: 4660. Total energy = 2378.7501 kcal/mol (2371.8041 without restraints) Performing minimization step: 4661. Total energy = 2378.4166 kcal/mol (2371.4722 without restraints) Performing minimization step: 4662. Total energy = 2378.0835 kcal/mol (2371.1405 without restraints) Performing minimization step: 4663. Total energy = 2377.7503 kcal/mol (2370.8090 without restraints) Performing minimization step: 4664. Total energy = 2377.4171 kcal/mol (2370.4772 without restraints) Performing minimization step: 4665. Total energy = 2377.0839 kcal/mol (2370.1456 without restraints) Performing minimization step: 4666. Total energy = 2376.7514 kcal/mol (2369.8146 without restraints) Performing minimization step: 4667. Total energy = 2376.4186 kcal/mol (2369.4832 without restraints) Performing minimization step: 4668. Total energy = 2376.0858 kcal/mol (2369.1519 without restraints) Performing minimization step: 4669. Total energy = 2375.7537 kcal/mol (2368.8215 without restraints) Performing minimization step: 4670. Total energy = 2375.4215 kcal/mol (2368.4908 without restraints) Performing minimization step: 4671. Total energy = 2375.0890 kcal/mol (2368.1597 without restraints) Performing minimization step: 4672. Total energy = 2374.7565 kcal/mol (2367.8286 without restraints) Performing minimization step: 4673. Total energy = 2374.4238 kcal/mol (2367.4975 without restraints) Performing minimization step: 4674. Total energy = 2374.0915 kcal/mol (2367.1665 without restraints) Performing minimization step: 4675. Total energy = 2373.7586 kcal/mol (2366.8352 without restraints) Performing minimization step: 4676. Total energy = 2373.4262 kcal/mol (2366.5044 without restraints) Performing minimization step: 4677. Total energy = 2373.0940 kcal/mol (2366.1737 without restraints) Performing minimization step: 4678. Total energy = 2372.7617 kcal/mol (2365.8428 without restraints) Performing minimization step: 4679. Total energy = 2372.4292 kcal/mol (2365.5118 without restraints) Performing minimization step: 4680. Total energy = 2372.0971 kcal/mol (2365.1812 without restraints) Performing minimization step: 4681. Total energy = 2371.7652 kcal/mol (2364.8507 without restraints) Performing minimization step: 4682. Total energy = 2371.4328 kcal/mol (2364.5198 without restraints) Performing minimization step: 4683. Total energy = 2371.1010 kcal/mol (2364.1895 without restraints) Performing minimization step: 4684. Total energy = 2370.7689 kcal/mol (2363.8590 without restraints) Performing minimization step: 4685. Total energy = 2370.4372 kcal/mol (2363.5286 without restraints) Performing minimization step: 4686. Total energy = 2370.1054 kcal/mol (2363.1985 without restraints) Performing minimization step: 4687. Total energy = 2369.7740 kcal/mol (2362.8684 without restraints) Performing minimization step: 4688. Total energy = 2369.4430 kcal/mol (2362.5389 without restraints) Performing minimization step: 4689. Total energy = 2369.1117 kcal/mol (2362.2090 without restraints) Performing minimization step: 4690. Total energy = 2368.7798 kcal/mol (2361.8786 without restraints) Performing minimization step: 4691. Total energy = 2368.4479 kcal/mol (2361.5482 without restraints) Performing minimization step: 4692. Total energy = 2368.1164 kcal/mol (2361.2181 without restraints) Performing minimization step: 4693. Total energy = 2367.7846 kcal/mol (2360.8877 without restraints) Performing minimization step: 4694. Total energy = 2367.4528 kcal/mol (2360.5575 without restraints) Performing minimization step: 4695. Total energy = 2367.1210 kcal/mol (2360.2270 without restraints) Performing minimization step: 4696. Total energy = 2366.7894 kcal/mol (2359.8971 without restraints) Performing minimization step: 4697. Total energy = 2366.4579 kcal/mol (2359.5669 without restraints) Performing minimization step: 4698. Total energy = 2366.1265 kcal/mol (2359.2371 without restraints) Performing minimization step: 4699. Total energy = 2365.7952 kcal/mol (2358.9073 without restraints) Performing minimization step: 4700. Total energy = 2365.4638 kcal/mol (2358.5772 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 2365.1330 kcal/mol (2358.2479 without restraints) Performing minimization step: 4702. Total energy = 2364.8014 kcal/mol (2357.9175 without restraints) Performing minimization step: 4703. Total energy = 2364.4701 kcal/mol (2357.5880 without restraints) Performing minimization step: 4704. Total energy = 2364.1391 kcal/mol (2357.2583 without restraints) Performing minimization step: 4705. Total energy = 2363.8078 kcal/mol (2356.9284 without restraints) Performing minimization step: 4706. Total energy = 2363.4764 kcal/mol (2356.5986 without restraints) Performing minimization step: 4707. Total energy = 2363.1451 kcal/mol (2356.2686 without restraints) Performing minimization step: 4708. Total energy = 2362.8142 kcal/mol (2355.9394 without restraints) Performing minimization step: 4709. Total energy = 2362.4835 kcal/mol (2355.6099 without restraints) Performing minimization step: 4710. Total energy = 2362.1523 kcal/mol (2355.2802 without restraints) Performing minimization step: 4711. Total energy = 2361.8211 kcal/mol (2354.9505 without restraints) Performing minimization step: 4712. Total energy = 2361.4904 kcal/mol (2354.6213 without restraints) Performing minimization step: 4713. Total energy = 2361.1595 kcal/mol (2354.2917 without restraints) Performing minimization step: 4714. Total energy = 2360.8284 kcal/mol (2353.9620 without restraints) Performing minimization step: 4715. Total energy = 2360.4974 kcal/mol (2353.6325 without restraints) Performing minimization step: 4716. Total energy = 2360.1664 kcal/mol (2353.3029 without restraints) Performing minimization step: 4717. Total energy = 2359.8359 kcal/mol (2352.9738 without restraints) Performing minimization step: 4718. Total energy = 2359.5053 kcal/mol (2352.6448 without restraints) Performing minimization step: 4719. Total energy = 2359.1754 kcal/mol (2352.3165 without restraints) Performing minimization step: 4720. Total energy = 2358.8447 kcal/mol (2351.9868 without restraints) Performing minimization step: 4721. Total energy = 2358.5138 kcal/mol (2351.6573 without restraints) Performing minimization step: 4722. Total energy = 2358.1827 kcal/mol (2351.3275 without restraints) Performing minimization step: 4723. Total energy = 2357.8515 kcal/mol (2350.9979 without restraints) Performing minimization step: 4724. Total energy = 2357.5204 kcal/mol (2350.6682 without restraints) Performing minimization step: 4725. Total energy = 2357.1897 kcal/mol (2350.3389 without restraints) Performing minimization step: 4726. Total energy = 2356.8592 kcal/mol (2350.0098 without restraints) Performing minimization step: 4727. Total energy = 2356.5287 kcal/mol (2349.6808 without restraints) Performing minimization step: 4728. Total energy = 2356.1980 kcal/mol (2349.3515 without restraints) Performing minimization step: 4729. Total energy = 2355.8675 kcal/mol (2349.0224 without restraints) Performing minimization step: 4730. Total energy = 2355.5368 kcal/mol (2348.6932 without restraints) Performing minimization step: 4731. Total energy = 2355.2060 kcal/mol (2348.3637 without restraints) Performing minimization step: 4732. Total energy = 2354.8757 kcal/mol (2348.0352 without restraints) Performing minimization step: 4733. Total energy = 2354.5459 kcal/mol (2347.7067 without restraints) Performing minimization step: 4734. Total energy = 2354.2157 kcal/mol (2347.3776 without restraints) Performing minimization step: 4735. Total energy = 2353.8856 kcal/mol (2347.0490 without restraints) Performing minimization step: 4736. Total energy = 2353.5554 kcal/mol (2346.7202 without restraints) Performing minimization step: 4737. Total energy = 2353.2252 kcal/mol (2346.3914 without restraints) Performing minimization step: 4738. Total energy = 2352.8953 kcal/mol (2346.0629 without restraints) Performing minimization step: 4739. Total energy = 2352.5652 kcal/mol (2345.7341 without restraints) Performing minimization step: 4740. Total energy = 2352.2351 kcal/mol (2345.4054 without restraints) Performing minimization step: 4741. Total energy = 2351.9046 kcal/mol (2345.0764 without restraints) Performing minimization step: 4742. Total energy = 2351.5745 kcal/mol (2344.7476 without restraints) Performing minimization step: 4743. Total energy = 2351.2445 kcal/mol (2344.4190 without restraints) Performing minimization step: 4744. Total energy = 2350.9141 kcal/mol (2344.0900 without restraints) Performing minimization step: 4745. Total energy = 2350.5840 kcal/mol (2343.7612 without restraints) Performing minimization step: 4746. Total energy = 2350.2535 kcal/mol (2343.4322 without restraints) Performing minimization step: 4747. Total energy = 2349.9230 kcal/mol (2343.1029 without restraints) Performing minimization step: 4748. Total energy = 2349.5931 kcal/mol (2342.7748 without restraints) Performing minimization step: 4749. Total energy = 2349.2634 kcal/mol (2342.4462 without restraints) Performing minimization step: 4750. Total energy = 2348.9334 kcal/mol (2342.1175 without restraints) Performing minimization step: 4751. Total energy = 2348.6031 kcal/mol (2341.7887 without restraints) Performing minimization step: 4752. Total energy = 2348.2730 kcal/mol (2341.4601 without restraints) Performing minimization step: 4753. Total energy = 2347.9428 kcal/mol (2341.1310 without restraints) Performing minimization step: 4754. Total energy = 2347.6128 kcal/mol (2340.8025 without restraints) Performing minimization step: 4755. Total energy = 2347.2826 kcal/mol (2340.4735 without restraints) Performing minimization step: 4756. Total energy = 2346.9526 kcal/mol (2340.1449 without restraints) Performing minimization step: 4757. Total energy = 2346.6224 kcal/mol (2339.8161 without restraints) Performing minimization step: 4758. Total energy = 2346.2921 kcal/mol (2339.4871 without restraints) Performing minimization step: 4759. Total energy = 2345.9617 kcal/mol (2339.1581 without restraints) Performing minimization step: 4760. Total energy = 2345.6316 kcal/mol (2338.8293 without restraints) Performing minimization step: 4761. Total energy = 2345.3016 kcal/mol (2338.5007 without restraints) Performing minimization step: 4762. Total energy = 2344.9713 kcal/mol (2338.1717 without restraints) Performing minimization step: 4763. Total energy = 2344.6414 kcal/mol (2337.8433 without restraints) Performing minimization step: 4764. Total energy = 2344.3111 kcal/mol (2337.5143 without restraints) Performing minimization step: 4765. Total energy = 2343.9808 kcal/mol (2337.1853 without restraints) Performing minimization step: 4766. Total energy = 2343.6504 kcal/mol (2336.8563 without restraints) Performing minimization step: 4767. Total energy = 2343.3201 kcal/mol (2336.5273 without restraints) Performing minimization step: 4768. Total energy = 2342.9901 kcal/mol (2336.1988 without restraints) Performing minimization step: 4769. Total energy = 2342.6602 kcal/mol (2335.8702 without restraints) Performing minimization step: 4770. Total energy = 2342.3302 kcal/mol (2335.5415 without restraints) Performing minimization step: 4771. Total energy = 2341.9999 kcal/mol (2335.2126 without restraints) Performing minimization step: 4772. Total energy = 2341.6697 kcal/mol (2334.8836 without restraints) Performing minimization step: 4773. Total energy = 2341.3397 kcal/mol (2334.5550 without restraints) Performing minimization step: 4774. Total energy = 2341.0095 kcal/mol (2334.2262 without restraints) Performing minimization step: 4775. Total energy = 2340.6793 kcal/mol (2333.8973 without restraints) Performing minimization step: 4776. Total energy = 2340.3490 kcal/mol (2333.5683 without restraints) Performing minimization step: 4777. Total energy = 2340.0192 kcal/mol (2333.2398 without restraints) Performing minimization step: 4778. Total energy = 2339.6894 kcal/mol (2332.9115 without restraints) Performing minimization step: 4779. Total energy = 2339.3594 kcal/mol (2332.5828 without restraints) Performing minimization step: 4780. Total energy = 2339.0299 kcal/mol (2332.2545 without restraints) Performing minimization step: 4781. Total energy = 2338.6995 kcal/mol (2331.9254 without restraints) Performing minimization step: 4782. Total energy = 2338.3697 kcal/mol (2331.5970 without restraints) Performing minimization step: 4783. Total energy = 2338.0394 kcal/mol (2331.2680 without restraints) Performing minimization step: 4784. Total energy = 2337.7095 kcal/mol (2330.9395 without restraints) Performing minimization step: 4785. Total energy = 2337.3792 kcal/mol (2330.6105 without restraints) Performing minimization step: 4786. Total energy = 2337.0491 kcal/mol (2330.2817 without restraints) Performing minimization step: 4787. Total energy = 2336.7190 kcal/mol (2329.9530 without restraints) Performing minimization step: 4788. Total energy = 2336.3887 kcal/mol (2329.6239 without restraints) Performing minimization step: 4789. Total energy = 2336.0589 kcal/mol (2329.2955 without restraints) Performing minimization step: 4790. Total energy = 2335.7288 kcal/mol (2328.9666 without restraints) Performing minimization step: 4791. Total energy = 2335.3990 kcal/mol (2328.6381 without restraints) Performing minimization step: 4792. Total energy = 2335.0687 kcal/mol (2328.3092 without restraints) Performing minimization step: 4793. Total energy = 2334.7387 kcal/mol (2327.9804 without restraints) Performing minimization step: 4794. Total energy = 2334.4088 kcal/mol (2327.6519 without restraints) Performing minimization step: 4795. Total energy = 2334.0788 kcal/mol (2327.3232 without restraints) Performing minimization step: 4796. Total energy = 2333.7486 kcal/mol (2326.9943 without restraints) Performing minimization step: 4797. Total energy = 2333.4190 kcal/mol (2326.6660 without restraints) Performing minimization step: 4798. Total energy = 2333.0886 kcal/mol (2326.3370 without restraints) Performing minimization step: 4799. Total energy = 2332.7582 kcal/mol (2326.0078 without restraints) Performing minimization step: 4800. Total energy = 2332.4285 kcal/mol (2325.6795 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 2332.0984 kcal/mol (2325.3506 without restraints) Performing minimization step: 4802. Total energy = 2331.7685 kcal/mol (2325.0220 without restraints) Performing minimization step: 4803. Total energy = 2331.4386 kcal/mol (2324.6934 without restraints) Performing minimization step: 4804. Total energy = 2331.1088 kcal/mol (2324.3649 without restraints) Performing minimization step: 4805. Total energy = 2330.7789 kcal/mol (2324.0363 without restraints) Performing minimization step: 4806. Total energy = 2330.4488 kcal/mol (2323.7074 without restraints) Performing minimization step: 4807. Total energy = 2330.1188 kcal/mol (2323.3787 without restraints) Performing minimization step: 4808. Total energy = 2329.7890 kcal/mol (2323.0502 without restraints) Performing minimization step: 4809. Total energy = 2329.4591 kcal/mol (2322.7218 without restraints) Performing minimization step: 4810. Total energy = 2329.1290 kcal/mol (2322.3929 without restraints) Performing minimization step: 4811. Total energy = 2328.7989 kcal/mol (2322.0640 without restraints) Performing minimization step: 4812. Total energy = 2328.4686 kcal/mol (2321.7350 without restraints) Performing minimization step: 4813. Total energy = 2328.1387 kcal/mol (2321.4064 without restraints) Performing minimization step: 4814. Total energy = 2327.8087 kcal/mol (2321.0778 without restraints) Performing minimization step: 4815. Total energy = 2327.4787 kcal/mol (2320.7490 without restraints) Performing minimization step: 4816. Total energy = 2327.1486 kcal/mol (2320.4202 without restraints) Performing minimization step: 4817. Total energy = 2326.8184 kcal/mol (2320.0912 without restraints) Performing minimization step: 4818. Total energy = 2326.4881 kcal/mol (2319.7620 without restraints) Performing minimization step: 4819. Total energy = 2326.1587 kcal/mol (2319.4342 without restraints) Performing minimization step: 4820. Total energy = 2325.8284 kcal/mol (2319.1050 without restraints) Performing minimization step: 4821. Total energy = 2325.4985 kcal/mol (2318.7765 without restraints) Performing minimization step: 4822. Total energy = 2325.1682 kcal/mol (2318.4474 without restraints) Performing minimization step: 4823. Total energy = 2324.8384 kcal/mol (2318.1190 without restraints) Performing minimization step: 4824. Total energy = 2324.5085 kcal/mol (2317.7901 without restraints) Performing minimization step: 4825. Total energy = 2324.1785 kcal/mol (2317.4615 without restraints) Performing minimization step: 4826. Total energy = 2323.8490 kcal/mol (2317.1333 without restraints) Performing minimization step: 4827. Total energy = 2323.5191 kcal/mol (2316.8046 without restraints) Performing minimization step: 4828. Total energy = 2323.1896 kcal/mol (2316.4764 without restraints) Performing minimization step: 4829. Total energy = 2322.8599 kcal/mol (2316.1481 without restraints) Performing minimization step: 4830. Total energy = 2322.5306 kcal/mol (2315.8200 without restraints) Performing minimization step: 4831. Total energy = 2322.2009 kcal/mol (2315.4915 without restraints) Performing minimization step: 4832. Total energy = 2321.8720 kcal/mol (2315.1639 without restraints) Performing minimization step: 4833. Total energy = 2321.5424 kcal/mol (2314.8355 without restraints) Performing minimization step: 4834. Total energy = 2321.2132 kcal/mol (2314.5076 without restraints) Performing minimization step: 4835. Total energy = 2320.8834 kcal/mol (2314.1790 without restraints) Performing minimization step: 4836. Total energy = 2320.5545 kcal/mol (2313.8514 without restraints) Performing minimization step: 4837. Total energy = 2320.2255 kcal/mol (2313.5238 without restraints) Performing minimization step: 4838. Total energy = 2319.8961 kcal/mol (2313.1955 without restraints) Performing minimization step: 4839. Total energy = 2319.5671 kcal/mol (2312.8677 without restraints) Performing minimization step: 4840. Total energy = 2319.2376 kcal/mol (2312.5395 without restraints) Performing minimization step: 4841. Total energy = 2318.9082 kcal/mol (2312.2115 without restraints) Performing minimization step: 4842. Total energy = 2318.5790 kcal/mol (2311.8834 without restraints) Performing minimization step: 4843. Total energy = 2318.2500 kcal/mol (2311.5558 without restraints) Performing minimization step: 4844. Total energy = 2317.9211 kcal/mol (2311.2281 without restraints) Performing minimization step: 4845. Total energy = 2317.5919 kcal/mol (2310.9001 without restraints) Performing minimization step: 4846. Total energy = 2317.2626 kcal/mol (2310.5719 without restraints) Performing minimization step: 4847. Total energy = 2316.9337 kcal/mol (2310.2443 without restraints) Performing minimization step: 4848. Total energy = 2316.6047 kcal/mol (2309.9167 without restraints) Performing minimization step: 4849. Total energy = 2316.2759 kcal/mol (2309.5890 without restraints) Performing minimization step: 4850. Total energy = 2315.9471 kcal/mol (2309.2614 without restraints) Performing minimization step: 4851. Total energy = 2315.6181 kcal/mol (2308.9337 without restraints) Performing minimization step: 4852. Total energy = 2315.2893 kcal/mol (2308.6062 without restraints) Performing minimization step: 4853. Total energy = 2314.9604 kcal/mol (2308.2785 without restraints) Performing minimization step: 4854. Total energy = 2314.6320 kcal/mol (2307.9513 without restraints) Performing minimization step: 4855. Total energy = 2314.3035 kcal/mol (2307.6242 without restraints) Performing minimization step: 4856. Total energy = 2313.9755 kcal/mol (2307.2973 without restraints) Performing minimization step: 4857. Total energy = 2313.6472 kcal/mol (2306.9702 without restraints) Performing minimization step: 4858. Total energy = 2313.3187 kcal/mol (2306.6430 without restraints) Performing minimization step: 4859. Total energy = 2312.9903 kcal/mol (2306.3158 without restraints) Performing minimization step: 4860. Total energy = 2312.6624 kcal/mol (2305.9892 without restraints) Performing minimization step: 4861. Total energy = 2312.3344 kcal/mol (2305.6624 without restraints) Performing minimization step: 4862. Total energy = 2312.0066 kcal/mol (2305.3359 without restraints) Performing minimization step: 4863. Total energy = 2311.6788 kcal/mol (2305.0092 without restraints) Performing minimization step: 4864. Total energy = 2311.3508 kcal/mol (2304.6826 without restraints) Performing minimization step: 4865. Total energy = 2311.0234 kcal/mol (2304.3563 without restraints) Performing minimization step: 4866. Total energy = 2310.6955 kcal/mol (2304.0296 without restraints) Performing minimization step: 4867. Total energy = 2310.3682 kcal/mol (2303.7035 without restraints) Performing minimization step: 4868. Total energy = 2310.0406 kcal/mol (2303.3771 without restraints) Performing minimization step: 4869. Total energy = 2309.7132 kcal/mol (2303.0510 without restraints) Performing minimization step: 4870. Total energy = 2309.3857 kcal/mol (2302.7247 without restraints) Performing minimization step: 4871. Total energy = 2309.0583 kcal/mol (2302.3985 without restraints) Performing minimization step: 4872. Total energy = 2308.7309 kcal/mol (2302.0723 without restraints) Performing minimization step: 4873. Total energy = 2308.4038 kcal/mol (2301.7465 without restraints) Performing minimization step: 4874. Total energy = 2308.0765 kcal/mol (2301.4204 without restraints) Performing minimization step: 4875. Total energy = 2307.7494 kcal/mol (2301.0945 without restraints) Performing minimization step: 4876. Total energy = 2307.4224 kcal/mol (2300.7688 without restraints) Performing minimization step: 4877. Total energy = 2307.0957 kcal/mol (2300.4432 without restraints) Performing minimization step: 4878. Total energy = 2306.7693 kcal/mol (2300.1182 without restraints) Performing minimization step: 4879. Total energy = 2306.4432 kcal/mol (2299.7932 without restraints) Performing minimization step: 4880. Total energy = 2306.1167 kcal/mol (2299.4679 without restraints) Performing minimization step: 4881. Total energy = 2305.7904 kcal/mol (2299.1428 without restraints) Performing minimization step: 4882. Total energy = 2305.4649 kcal/mol (2298.8185 without restraints) Performing minimization step: 4883. Total energy = 2305.1388 kcal/mol (2298.4936 without restraints) Performing minimization step: 4884. Total energy = 2304.8129 kcal/mol (2298.1691 without restraints) Performing minimization step: 4885. Total energy = 2304.4874 kcal/mol (2297.8447 without restraints) Performing minimization step: 4886. Total energy = 2304.1616 kcal/mol (2297.5201 without restraints) Performing minimization step: 4887. Total energy = 2303.8361 kcal/mol (2297.1958 without restraints) Performing minimization step: 4888. Total energy = 2303.5109 kcal/mol (2296.8718 without restraints) Performing minimization step: 4889. Total energy = 2303.1855 kcal/mol (2296.5476 without restraints) Performing minimization step: 4890. Total energy = 2302.8604 kcal/mol (2296.2237 without restraints) Performing minimization step: 4891. Total energy = 2302.5353 kcal/mol (2295.8998 without restraints) Performing minimization step: 4892. Total energy = 2302.2106 kcal/mol (2295.5764 without restraints) Performing minimization step: 4893. Total energy = 2301.8855 kcal/mol (2295.2523 without restraints) Performing minimization step: 4894. Total energy = 2301.5605 kcal/mol (2294.9289 without restraints) Performing minimization step: 4895. Total energy = 2301.2361 kcal/mol (2294.6054 without restraints) Performing minimization step: 4896. Total energy = 2300.9119 kcal/mol (2294.2825 without restraints) Performing minimization step: 4897. Total energy = 2300.5878 kcal/mol (2293.9596 without restraints) Performing minimization step: 4898. Total energy = 2300.2639 kcal/mol (2293.6370 without restraints) Performing minimization step: 4899. Total energy = 2299.9401 kcal/mol (2293.3143 without restraints) Performing minimization step: 4900. Total energy = 2299.6165 kcal/mol (2292.9919 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 2299.2931 kcal/mol (2292.6697 without restraints) Performing minimization step: 4902. Total energy = 2298.9697 kcal/mol (2292.3475 without restraints) Performing minimization step: 4903. Total energy = 2298.6465 kcal/mol (2292.0255 without restraints) Performing minimization step: 4904. Total energy = 2298.3234 kcal/mol (2291.7036 without restraints) Performing minimization step: 4905. Total energy = 2298.0007 kcal/mol (2291.3821 without restraints) Performing minimization step: 4906. Total energy = 2297.6780 kcal/mol (2291.0606 without restraints) Performing minimization step: 4907. Total energy = 2297.3553 kcal/mol (2290.7392 without restraints) Performing minimization step: 4908. Total energy = 2297.0329 kcal/mol (2290.4180 without restraints) Performing minimization step: 4909. Total energy = 2296.7110 kcal/mol (2290.0972 without restraints) Performing minimization step: 4910. Total energy = 2296.3889 kcal/mol (2289.7763 without restraints) Performing minimization step: 4911. Total energy = 2296.0671 kcal/mol (2289.4557 without restraints) Performing minimization step: 4912. Total energy = 2295.7457 kcal/mol (2289.1356 without restraints) Performing minimization step: 4913. Total energy = 2295.4243 kcal/mol (2288.8153 without restraints) Performing minimization step: 4914. Total energy = 2295.1034 kcal/mol (2288.4956 without restraints) Performing minimization step: 4915. Total energy = 2294.7826 kcal/mol (2288.1762 without restraints) Performing minimization step: 4916. Total energy = 2294.4618 kcal/mol (2287.8565 without restraints) Performing minimization step: 4917. Total energy = 2294.1411 kcal/mol (2287.5369 without restraints) Performing minimization step: 4918. Total energy = 2293.8203 kcal/mol (2287.2171 without restraints) Performing minimization step: 4919. Total energy = 2293.4998 kcal/mol (2286.8980 without restraints) Performing minimization step: 4920. Total energy = 2293.1801 kcal/mol (2286.5795 without restraints) Performing minimization step: 4921. Total energy = 2292.8599 kcal/mol (2286.2605 without restraints) Performing minimization step: 4922. Total energy = 2292.5402 kcal/mol (2285.9420 without restraints) Performing minimization step: 4923. Total energy = 2292.2206 kcal/mol (2285.6236 without restraints) Performing minimization step: 4924. Total energy = 2291.9013 kcal/mol (2285.3055 without restraints) Performing minimization step: 4925. Total energy = 2291.5821 kcal/mol (2284.9875 without restraints) Performing minimization step: 4926. Total energy = 2291.2632 kcal/mol (2284.6698 without restraints) Performing minimization step: 4927. Total energy = 2290.9449 kcal/mol (2284.3528 without restraints) Performing minimization step: 4928. Total energy = 2290.6267 kcal/mol (2284.0357 without restraints) Performing minimization step: 4929. Total energy = 2290.3088 kcal/mol (2283.7191 without restraints) Performing minimization step: 4930. Total energy = 2289.9909 kcal/mol (2283.4024 without restraints) Performing minimization step: 4931. Total energy = 2289.6735 kcal/mol (2283.0863 without restraints) Performing minimization step: 4932. Total energy = 2289.3564 kcal/mol (2282.7701 without restraints) Performing minimization step: 4933. Total energy = 2289.0391 kcal/mol (2282.4540 without restraints) Performing minimization step: 4934. Total energy = 2288.7222 kcal/mol (2282.1383 without restraints) Performing minimization step: 4935. Total energy = 2288.4053 kcal/mol (2281.8226 without restraints) Performing minimization step: 4936. Total energy = 2288.0888 kcal/mol (2281.5074 without restraints) Performing minimization step: 4937. Total energy = 2287.7727 kcal/mol (2281.1924 without restraints) Performing minimization step: 4938. Total energy = 2287.4566 kcal/mol (2280.8776 without restraints) Performing minimization step: 4939. Total energy = 2287.1410 kcal/mol (2280.5631 without restraints) Performing minimization step: 4940. Total energy = 2286.8253 kcal/mol (2280.2485 without restraints) Performing minimization step: 4941. Total energy = 2286.5097 kcal/mol (2279.9342 without restraints) Performing minimization step: 4942. Total energy = 2286.1947 kcal/mol (2279.6204 without restraints) Performing minimization step: 4943. Total energy = 2285.8803 kcal/mol (2279.3072 without restraints) Performing minimization step: 4944. Total energy = 2285.5656 kcal/mol (2278.9937 without restraints) Performing minimization step: 4945. Total energy = 2285.2512 kcal/mol (2278.6805 without restraints) Performing minimization step: 4946. Total energy = 2284.9370 kcal/mol (2278.3674 without restraints) Performing minimization step: 4947. Total energy = 2284.6232 kcal/mol (2278.0547 without restraints) Performing minimization step: 4948. Total energy = 2284.3093 kcal/mol (2277.7422 without restraints) Performing minimization step: 4949. Total energy = 2283.9960 kcal/mol (2277.4300 without restraints) Performing minimization step: 4950. Total energy = 2283.6833 kcal/mol (2277.1186 without restraints) Performing minimization step: 4951. Total energy = 2283.3708 kcal/mol (2276.8074 without restraints) Performing minimization step: 4952. Total energy = 2283.0588 kcal/mol (2276.4964 without restraints) Performing minimization step: 4953. Total energy = 2282.7465 kcal/mol (2276.1852 without restraints) Performing minimization step: 4954. Total energy = 2282.4345 kcal/mol (2275.8745 without restraints) Performing minimization step: 4955. Total energy = 2282.1231 kcal/mol (2275.5644 without restraints) Performing minimization step: 4956. Total energy = 2281.8117 kcal/mol (2275.2541 without restraints) Performing minimization step: 4957. Total energy = 2281.5004 kcal/mol (2274.9441 without restraints) Performing minimization step: 4958. Total energy = 2281.1899 kcal/mol (2274.6346 without restraints) Performing minimization step: 4959. Total energy = 2280.8794 kcal/mol (2274.3253 without restraints) Performing minimization step: 4960. Total energy = 2280.5685 kcal/mol (2274.0156 without restraints) Performing minimization step: 4961. Total energy = 2280.2584 kcal/mol (2273.7068 without restraints) Performing minimization step: 4962. Total energy = 2279.9485 kcal/mol (2273.3980 without restraints) Performing minimization step: 4963. Total energy = 2279.6393 kcal/mol (2273.0900 without restraints) Performing minimization step: 4964. Total energy = 2279.3301 kcal/mol (2272.7820 without restraints) Performing minimization step: 4965. Total energy = 2279.0212 kcal/mol (2272.4743 without restraints) Performing minimization step: 4966. Total energy = 2278.7125 kcal/mol (2272.1668 without restraints) Performing minimization step: 4967. Total energy = 2278.4036 kcal/mol (2271.8590 without restraints) Performing minimization step: 4968. Total energy = 2278.0953 kcal/mol (2271.5519 without restraints) Performing minimization step: 4969. Total energy = 2277.7872 kcal/mol (2271.2450 without restraints) Performing minimization step: 4970. Total energy = 2277.4795 kcal/mol (2270.9383 without restraints) Performing minimization step: 4971. Total energy = 2277.1719 kcal/mol (2270.6321 without restraints) Performing minimization step: 4972. Total energy = 2276.8648 kcal/mol (2270.3261 without restraints) Performing minimization step: 4973. Total energy = 2276.5578 kcal/mol (2270.0204 without restraints) Performing minimization step: 4974. Total energy = 2276.2511 kcal/mol (2269.7148 without restraints) Performing minimization step: 4975. Total energy = 2275.9448 kcal/mol (2269.4097 without restraints) Performing minimization step: 4976. Total energy = 2275.6392 kcal/mol (2269.1055 without restraints) Performing minimization step: 4977. Total energy = 2275.3335 kcal/mol (2268.8008 without restraints) Performing minimization step: 4978. Total energy = 2275.0277 kcal/mol (2268.4961 without restraints) Performing minimization step: 4979. Total energy = 2274.7222 kcal/mol (2268.1918 without restraints) Performing minimization step: 4980. Total energy = 2274.4174 kcal/mol (2267.8881 without restraints) Performing minimization step: 4981. Total energy = 2274.1126 kcal/mol (2267.5846 without restraints) Performing minimization step: 4982. Total energy = 2273.8088 kcal/mol (2267.2821 without restraints) Performing minimization step: 4983. Total energy = 2273.5050 kcal/mol (2266.9795 without restraints) Performing minimization step: 4984. Total energy = 2273.2013 kcal/mol (2266.6768 without restraints) Performing minimization step: 4985. Total energy = 2272.8982 kcal/mol (2266.3748 without restraints) Performing minimization step: 4986. Total energy = 2272.5951 kcal/mol (2266.0730 without restraints) Performing minimization step: 4987. Total energy = 2272.2921 kcal/mol (2265.7711 without restraints) Performing minimization step: 4988. Total energy = 2271.9894 kcal/mol (2265.4697 without restraints) Performing minimization step: 4989. Total energy = 2271.6869 kcal/mol (2265.1684 without restraints) Performing minimization step: 4990. Total energy = 2271.3847 kcal/mol (2264.8673 without restraints) Performing minimization step: 4991. Total energy = 2271.0829 kcal/mol (2264.5667 without restraints) Performing minimization step: 4992. Total energy = 2270.7813 kcal/mol (2264.2662 without restraints) Performing minimization step: 4993. Total energy = 2270.4796 kcal/mol (2263.9657 without restraints) Performing minimization step: 4994. Total energy = 2270.1789 kcal/mol (2263.6662 without restraints) Performing minimization step: 4995. Total energy = 2269.8780 kcal/mol (2263.3665 without restraints) Performing minimization step: 4996. Total energy = 2269.5774 kcal/mol (2263.0671 without restraints) Performing minimization step: 4997. Total energy = 2269.2772 kcal/mol (2262.7680 without restraints) Performing minimization step: 4998. Total energy = 2268.9774 kcal/mol (2262.4694 without restraints) Performing minimization step: 4999. Total energy = 2268.6777 kcal/mol (2262.1708 without restraints) Performing minimization step: 5000. Total energy = 2268.3782 kcal/mol (2261.8725 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/d9f45863/tmp/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx/BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to BKL10sepM8-d7f8b841_sim_minE_TOTAL-000001_AA_refx.pdb DONE!