============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027.pdb ============================================================================= Atom's 1100 C6 residue renamed to RU3 Atom's 1099 C5 residue renamed to RU3 Atom's 1098 O4 residue renamed to RU3 Atom's 1097 C4 residue renamed to RU3 Atom's 1096 N3 residue renamed to RU3 Atom's 1095 O2 residue renamed to RU3 Atom's 1094 C2 residue renamed to RU3 Atom's 1093 N1 residue renamed to RU3 Atom's 1092 C1' residue renamed to RU3 Atom's 1091 O2' residue renamed to RU3 Atom's 1090 C2' residue renamed to RU3 Atom's 1089 O3' residue renamed to RU3 Atom's 1088 C3' residue renamed to RU3 Atom's 1087 O4' residue renamed to RU3 Atom's 1086 C4' residue renamed to RU3 Atom's 1085 C5' residue renamed to RU3 Atom's 1084 O5' residue renamed to RU3 Atom's 1083 OP2 residue renamed to RU3 Atom's 1082 OP1 residue renamed to RU3 Atom's 1081 P residue renamed to RU3 Missing atom added: ATOM 21 H5'1 U A 1 63.911 12.637 -28.011 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 1 63.140 12.406 -29.680 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 1 62.678 10.646 -28.271 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 1 60.229 12.410 -28.797 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 1 60.720 10.427 -25.538 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 1 58.943 10.648 -27.659 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 1 60.745 9.047 -28.431 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 1 61.026 13.547 -26.549 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 1 56.976 12.627 -23.435 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 1 59.803 15.490 -25.650 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 2 59.496 8.014 -31.024 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 2 59.165 8.695 -32.715 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 2 58.104 6.606 -32.102 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 2 56.249 9.048 -31.128 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 2 56.212 5.683 -29.530 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 2 54.514 7.602 -30.590 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 2 55.320 6.227 -32.532 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 2 57.845 9.067 -28.914 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 2 55.849 10.001 -24.571 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 2 54.664 9.187 -23.649 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 2 53.194 5.226 -25.829 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 3 52.890 8.153 -33.560 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 3 52.209 9.876 -33.633 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 3 51.137 7.715 -32.869 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 3 50.941 9.272 -30.942 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 3 52.216 6.046 -29.876 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 3 50.083 7.205 -29.765 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 3 50.294 6.075 -32.227 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 3 54.179 9.106 -29.622 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 3 53.594 10.573 -24.994 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 3 52.561 10.038 -23.744 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 3 49.540 6.713 -25.298 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 4 46.417 10.351 -31.370 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 4 47.438 10.208 -29.830 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 4 45.105 9.453 -29.918 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 4 46.855 7.071 -29.854 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 4 43.778 7.007 -32.049 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 4 44.691 5.812 -29.854 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 4 43.733 8.200 -29.105 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 4 46.860 6.825 -32.648 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 4 46.985 2.969 -35.353 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 4 45.404 2.343 -35.161 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 4 48.054 5.156 -34.385 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 5 43.764 6.753 -27.564 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 5 44.103 5.717 -26.066 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 5 42.449 4.717 -27.083 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 5 45.242 3.308 -27.188 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 5 42.698 2.562 -29.762 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 5 44.004 1.308 -27.922 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 5 41.998 2.568 -26.680 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 5 45.537 4.404 -29.615 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 5 44.831 0.699 -33.190 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 5 47.156 4.269 -31.475 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 6 47.283 4.758 -23.792 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 6 47.913 4.623 -25.529 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 6 49.569 5.294 -24.875 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 6 49.991 3.554 -22.932 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 6 51.795 6.129 -24.905 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 6 52.224 3.951 -23.282 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 6 51.891 3.131 -25.613 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 6 48.401 6.605 -23.467 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 6 51.922 9.859 -21.670 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 6 47.579 8.438 -22.119 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 7 52.358 2.593 -25.174 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 7 53.471 1.157 -24.809 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 7 54.558 3.234 -25.088 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 7 54.556 2.361 -22.176 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 7 54.350 6.055 -23.162 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 7 55.963 4.259 -21.699 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 7 56.692 4.071 -24.118 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 7 51.699 4.434 -21.385 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 7 53.780 9.066 -20.621 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 7 50.654 5.831 -19.694 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 8 58.171 1.499 -24.839 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 8 58.655 -0.188 -24.243 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 8 59.738 1.550 -25.825 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 8 60.324 2.953 -23.074 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 8 59.386 4.603 -26.539 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 8 61.423 4.672 -24.567 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 8 61.920 2.619 -26.046 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 8 57.516 4.213 -23.459 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 8 56.752 8.991 -22.680 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 8 57.339 10.392 -23.460 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 8 60.412 9.289 -26.916 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 9 63.751 3.217 -24.894 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 9 65.062 2.244 -24.016 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 9 65.235 4.327 -25.514 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 9 65.198 5.455 -22.762 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 9 63.117 7.076 -25.538 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 9 65.202 7.648 -23.757 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 9 66.244 6.499 -25.773 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 9 62.182 5.076 -23.089 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 9 59.530 7.648 -20.141 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 9 59.869 9.247 -20.651 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 9 60.456 5.368 -21.041 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 10 69.597 7.421 -22.009 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 10 67.927 8.126 -21.624 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 10 68.911 9.850 -22.134 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 10 68.176 9.928 -20.813 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 10 66.276 11.263 -23.707 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 10 67.555 12.078 -21.404 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 10 69.324 12.032 -23.121 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 10 65.714 8.262 -22.040 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 10 62.215 8.357 -18.903 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 10 61.978 10.038 -18.681 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 10 63.992 7.089 -20.351 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 11 73.124 12.087 -20.687 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 11 72.297 11.447 -22.218 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 11 74.791 11.546 -21.786 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 11 73.928 8.808 -20.499 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 11 76.536 10.777 -19.019 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 11 76.179 8.411 -19.916 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 11 76.783 10.081 -21.847 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 11 73.359 11.742 -18.131 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 11 72.614 9.275 -13.969 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 11 73.457 7.990 -13.225 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 11 77.185 6.623 -15.840 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 12 76.040 6.646 -20.898 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 12 75.769 5.197 -22.021 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 12 76.308 4.500 -19.946 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 12 73.105 4.687 -20.142 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 12 75.380 4.511 -16.987 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 12 72.976 3.389 -18.157 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 12 74.873 2.136 -19.098 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 12 73.391 6.626 -18.826 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 12 72.480 5.887 -13.803 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 12 71.795 8.133 -17.750 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 13 72.928 0.056 -20.365 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 13 71.350 -0.159 -21.312 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 13 71.198 -1.256 -19.333 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 13 69.364 1.129 -19.693 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 13 70.699 0.118 -16.227 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 13 68.281 0.492 -17.633 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 13 69.088 -1.857 -18.115 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 13 71.007 2.538 -18.727 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 13 68.929 3.811 -14.183 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 13 70.746 4.919 -18.252 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 14 67.661 -1.392 -18.545 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 14 66.563 -2.460 -19.587 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 14 66.063 -2.037 -17.227 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 14 64.466 0.132 -18.815 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 14 65.936 0.546 -15.252 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 14 63.481 0.746 -16.672 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 14 63.713 -1.665 -16.064 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 14 67.049 1.859 -18.378 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 14 64.231 6.642 -14.339 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 14 63.151 3.463 -12.919 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 14 62.861 5.090 -13.180 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 15 61.295 -1.492 -16.433 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 15 59.793 -1.413 -17.517 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 15 59.372 -0.687 -15.394 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 15 58.983 1.334 -17.492 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 15 60.355 2.429 -14.116 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 15 58.202 2.849 -15.791 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 15 57.737 0.696 -14.474 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 15 61.562 1.832 -17.338 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 15 63.209 5.964 -18.939 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 15 62.659 7.061 -17.745 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 15 62.897 3.369 -19.106 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 16 56.075 1.820 -15.105 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 16 54.361 1.606 -15.780 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 16 54.831 3.264 -14.079 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 16 54.757 4.671 -16.811 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 16 57.058 5.817 -13.971 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 16 55.020 6.761 -15.651 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 16 53.872 5.548 -13.741 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 16 57.737 3.938 -17.018 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 16 60.033 7.407 -19.587 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 16 60.264 9.078 -19.318 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 16 58.211 10.476 -15.264 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 17 53.492 6.661 -14.647 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 17 51.649 6.795 -14.783 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 17 52.843 8.738 -14.122 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 17 52.221 8.953 -17.162 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 17 55.291 10.543 -15.525 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 17 53.078 11.212 -17.058 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 17 52.308 11.056 -14.596 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 17 54.856 7.557 -17.569 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 17 57.672 12.737 -21.086 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 17 56.309 14.281 -18.078 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 17 56.733 14.411 -19.691 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 18 51.310 12.680 -15.654 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 18 49.738 13.322 -16.398 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 18 51.365 14.923 -16.483 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 18 50.589 13.650 -19.179 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 18 54.074 15.013 -18.596 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 18 51.900 15.277 -20.306 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 18 51.490 16.746 -18.276 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 18 52.524 11.576 -18.991 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 18 55.354 10.129 -22.706 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 18 56.550 10.932 -23.625 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 18 57.112 15.427 -22.183 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 19 50.435 17.802 -19.588 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 19 49.583 17.844 -21.234 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 19 51.846 18.552 -21.184 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 19 51.297 19.030 -22.587 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 19 53.895 16.177 -22.814 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 19 52.896 18.979 -23.882 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 19 54.174 19.491 -22.547 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 19 55.046 15.500 -24.111 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 19 55.270 10.697 -23.961 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 19 54.252 9.537 -23.229 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 19 51.047 11.597 -20.386 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 20 54.565 22.758 -21.836 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 20 54.781 21.084 -22.602 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 20 56.031 21.397 -23.555 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 20 57.834 21.829 -22.213 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 20 56.746 20.104 -25.507 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 20 58.966 20.331 -23.794 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 20 57.435 18.558 -22.782 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 20 55.308 22.307 -25.091 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 20 56.169 24.430 -29.185 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 20 57.618 23.668 -29.685 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 20 54.663 23.964 -27.093 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 21 60.897 21.507 -22.169 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 21 60.224 20.016 -23.039 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 21 62.059 19.796 -23.687 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 21 63.604 20.334 -22.144 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 21 62.846 18.095 -25.333 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 21 65.029 19.243 -23.351 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 21 64.592 17.494 -22.529 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 21 60.022 17.145 -21.158 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 21 61.581 10.638 -22.616 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 21 63.694 12.626 -24.824 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 21 62.834 11.218 -24.546 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 22 62.094 19.152 -18.589 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 22 63.461 19.183 -17.339 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 22 61.146 18.678 -16.695 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 22 62.694 16.185 -16.494 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 22 59.083 16.162 -17.857 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 22 60.505 15.249 -15.676 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 22 60.008 17.831 -15.254 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 22 62.226 15.514 -19.449 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 22 58.753 9.808 -17.862 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 22 57.213 12.429 -15.851 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 22 57.606 10.815 -16.045 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 23 60.581 16.123 -12.841 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 23 61.848 15.925 -11.505 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 23 60.097 14.559 -11.102 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 23 62.658 13.084 -11.942 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 23 59.185 11.726 -12.714 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 23 61.528 11.036 -11.398 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 23 60.192 12.437 -9.771 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 23 61.712 13.379 -14.811 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 23 61.698 6.570 -15.692 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 23 59.757 7.127 -12.658 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 23 60.766 6.137 -13.554 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 24 60.809 11.753 -9.129 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 24 61.819 10.653 -8.031 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 24 60.302 9.341 -8.660 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 24 63.233 8.793 -9.241 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 24 60.570 7.499 -11.599 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 24 62.705 6.625 -9.983 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 24 60.663 6.822 -8.510 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 24 62.503 10.343 -11.792 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 24 65.734 9.627 -15.167 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 24 65.621 7.939 -15.425 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 24 64.398 11.167 -13.523 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 25 61.998 6.385 -7.645 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 25 63.083 5.778 -6.271 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 25 62.656 4.069 -7.603 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 25 65.567 5.045 -7.601 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 25 64.033 3.346 -10.637 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 25 66.092 3.054 -8.884 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 25 63.913 2.154 -7.752 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 25 64.987 6.833 -9.711 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 25 68.569 7.422 -13.001 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 25 69.288 6.354 -14.123 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 25 67.429 1.990 -13.797 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 26 66.966 0.487 -5.824 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 26 68.614 1.325 -5.964 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 26 68.972 -0.344 -7.107 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 26 70.278 1.742 -7.080 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 26 69.158 0.809 -10.582 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 26 71.438 1.006 -9.055 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 26 70.414 -1.285 -8.582 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 26 68.003 3.256 -8.616 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 26 69.530 7.372 -10.359 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 26 70.750 6.872 -11.450 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 26 68.006 5.945 -8.777 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 27 72.874 -0.517 -7.826 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 27 74.183 -0.602 -6.517 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 27 75.165 -0.166 -8.483 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 27 75.010 2.260 -6.524 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 27 75.246 2.600 -10.348 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 27 76.535 3.407 -7.993 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 27 77.330 1.039 -8.589 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 27 73.127 3.096 -7.518 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 27 72.828 7.836 -8.030 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 27 73.642 8.933 -9.055 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 27 76.442 6.659 -12.150 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 28 78.901 1.317 -7.302 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 28 80.021 1.181 -5.832 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 28 80.861 2.279 -7.800 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 28 80.096 4.388 -5.711 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 28 79.666 5.090 -9.383 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 28 80.959 6.054 -7.216 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 28 82.258 3.967 -8.212 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 28 77.243 4.334 -6.587 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 28 77.268 10.859 -8.704 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 28 80.217 9.363 -10.239 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 28 79.456 10.714 -9.611 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 29 84.618 6.304 -6.141 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 29 84.101 7.260 -4.639 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 29 84.616 8.718 -6.228 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 29 82.880 9.253 -4.493 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 29 81.701 9.939 -8.037 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 29 82.375 11.284 -5.718 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 29 84.569 10.875 -6.931 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 29 80.340 7.534 -5.791 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 29 76.127 9.666 -4.532 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 29 75.495 11.223 -4.837 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 29 78.686 13.988 -7.022 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 30 85.088 11.857 -5.374 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 30 85.750 12.680 -3.852 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 30 84.809 14.227 -5.184 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 30 83.072 13.444 -2.691 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 30 81.570 14.856 -5.864 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 30 81.690 15.348 -3.160 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 30 83.840 16.303 -4.240 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 30 81.841 11.433 -4.473 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 30 75.513 13.991 -3.746 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 30 77.594 16.866 -4.578 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 30 76.239 16.248 -3.815 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 31 82.087 16.363 -1.030 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 31 82.152 15.889 0.760 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 31 80.070 16.130 0.395 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 31 81.132 13.411 1.263 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 31 77.925 13.778 -0.824 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 31 78.796 12.776 1.598 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 31 78.381 15.262 1.956 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 31 80.813 13.141 -2.441 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 31 78.310 6.973 -0.776 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 31 76.689 9.289 1.524 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 31 77.254 7.748 1.202 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 32 79.244 13.384 4.419 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 32 80.446 12.761 5.683 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 32 79.055 11.200 5.621 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 32 81.948 10.657 4.664 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 32 78.995 8.640 3.405 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 32 81.427 8.323 4.667 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 32 79.726 8.963 6.461 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 32 81.141 11.409 1.886 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 32 82.483 5.227 -0.781 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 32 80.436 4.556 2.159 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 32 81.634 4.061 1.101 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 33 81.542 7.653 6.726 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 33 82.861 7.306 7.980 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 33 82.592 5.462 6.802 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 33 85.239 7.001 6.225 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 33 83.433 4.608 3.733 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 33 85.965 5.021 5.039 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 33 84.519 3.786 6.690 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 33 83.918 7.897 3.870 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 33 85.494 5.212 -0.297 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 33 84.620 9.166 1.867 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 34 86.832 3.484 7.944 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 34 88.569 4.083 8.180 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 34 88.431 2.167 6.936 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 34 89.872 4.244 5.779 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 34 87.584 2.074 3.532 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 34 90.254 2.557 3.941 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 34 89.449 0.918 5.876 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 34 87.537 5.632 4.332 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 34 89.756 4.366 -2.041 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 34 89.919 1.149 -0.336 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 34 90.508 2.178 -1.516 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 35 91.736 1.130 5.482 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 35 92.991 1.014 6.841 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 35 93.232 -0.177 4.663 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 35 94.630 2.625 4.370 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 35 92.901 0.961 1.485 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 35 95.324 2.058 2.191 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 35 95.269 -0.358 2.983 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 35 91.873 3.659 3.768 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 35 91.969 7.318 0.540 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 35 92.516 7.417 -1.074 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 35 94.202 3.236 -2.587 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 36 98.154 0.538 3.376 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 36 99.449 1.443 4.344 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 36 99.915 1.197 2.087 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 36 99.067 4.079 2.715 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 36 98.405 2.518 -0.658 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 36 99.764 4.552 0.388 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 36 101.180 2.320 0.768 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 36 96.134 3.165 2.112 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 36 95.608 8.228 -2.487 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 36 98.743 6.556 -3.296 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 36 97.819 7.950 -3.300 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 37 101.863 5.258 1.425 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 37 103.163 5.677 2.676 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 37 102.870 6.823 0.499 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 37 101.149 8.478 2.485 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 37 100.267 7.923 -1.232 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 37 100.768 9.977 0.554 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 37 103.087 8.984 -0.168 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 37 99.273 6.669 1.845 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 37 95.946 9.865 -0.552 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 37 96.963 6.802 2.714 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 38 101.843 13.189 2.778 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 38 100.215 12.319 2.948 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 38 100.753 14.605 1.913 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 38 100.277 12.916 -0.338 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 38 103.357 14.952 -0.600 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 38 100.980 14.617 -1.814 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 38 100.657 16.232 0.158 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 38 103.266 11.444 0.320 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 38 104.733 9.229 -3.791 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 38 105.023 9.814 -5.369 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 38 103.872 14.410 -5.749 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 39 98.353 15.905 -2.587 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 39 96.542 15.936 -2.195 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 39 97.996 16.366 -4.310 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 39 97.166 13.763 -4.862 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 39 100.934 14.555 -5.141 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 39 98.769 13.804 -6.719 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 39 98.634 16.366 -6.394 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 39 99.302 12.714 -2.966 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 39 101.529 10.036 -6.818 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 39 99.493 10.267 -2.709 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 40 96.774 14.037 -8.244 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 40 95.099 13.245 -8.313 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 40 96.522 11.852 -9.285 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 40 94.680 10.889 -7.439 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 40 97.976 9.446 -6.897 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 40 95.530 8.724 -7.545 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 40 96.749 9.377 -9.669 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 40 95.334 11.844 -5.885 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 40 93.608 10.384 -1.745 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 40 94.467 8.926 -1.491 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 40 93.791 12.121 -3.697 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 41 94.946 7.983 -10.076 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 41 93.535 7.969 -11.277 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 41 94.812 6.010 -10.365 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 41 92.333 5.966 -8.878 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 41 95.637 5.365 -7.020 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 41 93.250 4.073 -7.638 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 41 94.772 3.834 -9.692 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 41 93.552 8.067 -7.275 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 41 93.104 5.380 -2.843 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 41 92.285 9.093 -5.418 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 42 93.208 2.616 -9.556 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 42 91.819 1.526 -10.121 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 42 92.741 0.534 -8.381 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 42 90.005 1.991 -7.760 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 42 92.627 1.186 -5.140 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 42 89.940 0.808 -5.685 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 42 91.104 -1.018 -6.946 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 42 91.604 3.988 -7.137 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 42 89.798 7.137 -4.109 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 42 89.728 6.239 -2.653 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 42 90.660 6.428 -6.478 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 43 88.367 -1.899 -6.636 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 43 86.800 -2.139 -7.596 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 43 87.037 -2.780 -5.232 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 43 85.190 -0.609 -5.397 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 43 87.725 -0.443 -2.609 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 43 85.019 -0.577 -3.027 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 43 85.952 -2.957 -3.189 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 43 87.896 1.561 -5.567 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 43 85.459 5.167 -0.273 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 43 85.014 1.681 0.694 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 43 84.521 3.276 0.809 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 44 84.177 -3.039 -2.659 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 44 82.401 -3.570 -2.644 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 44 82.810 -2.946 -0.610 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 44 81.012 -1.043 -2.355 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 44 82.895 0.150 0.710 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 44 80.344 0.126 -0.419 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 44 80.499 -1.970 0.808 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 44 83.110 0.096 -2.928 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 44 83.476 4.633 -4.210 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 44 83.240 5.448 -2.723 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 44 83.500 2.065 -4.729 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 45 78.394 -1.033 1.025 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 45 76.650 -1.274 0.448 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 45 76.940 0.498 1.906 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 45 76.333 1.397 -0.917 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 45 78.524 3.506 1.338 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 45 76.171 3.654 -0.037 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 45 75.741 2.423 2.230 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 45 79.041 1.277 -1.279 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 45 79.720 6.300 -2.437 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 45 80.079 1.837 -3.452 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 46 73.858 2.996 1.401 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 46 72.191 3.223 0.625 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 46 72.693 5.157 1.451 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 46 72.842 4.905 -1.682 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 46 74.645 7.581 0.221 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 46 72.791 7.395 -1.639 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 46 71.572 7.031 0.686 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 46 74.953 4.398 -1.473 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 46 77.110 8.430 -3.941 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 46 76.337 3.928 -3.462 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 47 68.668 5.642 -0.190 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 47 68.192 6.436 -1.795 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 47 67.601 7.710 0.053 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 47 69.729 8.794 -1.771 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 47 69.812 9.629 1.945 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 47 69.665 10.862 -0.556 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 47 67.299 10.127 0.052 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 47 71.853 7.831 -0.007 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 47 73.546 12.149 2.347 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 47 74.289 8.246 0.044 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 48 66.655 11.003 -1.352 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 48 66.071 11.629 -2.996 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 48 66.283 13.302 -1.400 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 48 68.630 13.317 -3.440 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 48 69.105 14.531 0.084 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 48 69.383 15.368 -2.520 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 48 66.893 15.624 -1.877 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 48 70.011 11.218 -1.169 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 48 73.923 14.639 -0.966 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 48 72.318 10.357 -1.381 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 49 67.716 16.764 -3.897 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 49 67.958 17.020 -5.718 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 49 69.366 18.382 -4.705 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 49 70.549 16.141 -6.390 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 49 72.407 17.551 -3.371 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 49 72.703 17.169 -6.099 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 49 71.405 19.319 -5.807 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 49 70.545 14.623 -4.055 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 49 73.678 11.096 -4.251 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 49 75.168 11.938 -4.259 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 49 71.231 12.018 -4.096 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 50 72.376 19.662 -9.790 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 50 73.540 18.335 -9.227 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 50 74.890 19.241 -9.313 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 50 74.717 17.539 -10.207 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 50 76.104 17.316 -6.553 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 50 77.005 17.147 -9.188 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 50 76.868 19.684 -8.742 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 50 73.420 16.285 -7.825 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 50 76.998 12.596 -7.098 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 50 72.684 13.935 -7.925 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 51 78.213 18.913 -10.959 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 51 78.413 18.834 -12.801 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 51 80.206 17.866 -11.800 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 51 78.159 15.845 -13.039 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 51 80.443 14.888 -10.201 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 51 79.817 14.122 -12.737 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 51 81.513 16.063 -12.925 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 51 77.119 15.897 -10.795 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 51 74.416 12.341 -9.246 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 51 75.575 11.127 -8.908 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 51 74.749 14.765 -10.185 1.00 0.00 H Missing atom added: ATOM 21 H5'1 RU3 A 52 81.363 14.597 -15.159 1.00 0.00 H Missing atom added: ATOM 22 H5'2 RU3 A 52 80.312 13.539 -16.259 1.00 0.00 H Missing atom added: ATOM 23 H4' RU3 A 52 81.321 12.034 -15.550 1.00 0.00 H Missing atom added: ATOM 24 H3' RU3 A 52 78.589 12.204 -16.312 1.00 0.00 H Missing atom added: ATOM 27 H1' RU3 A 52 79.558 10.242 -13.074 1.00 0.00 H Missing atom added: ATOM 25 H2' RU3 A 52 78.266 9.925 -15.735 1.00 0.00 H Missing atom added: ATOM 26 HO'2 RU3 A 52 80.650 9.598 -16.096 1.00 0.00 H Missing atom added: ATOM 29 H6 RU3 A 52 77.863 13.060 -13.182 1.00 0.00 H Missing atom added: ATOM 30 H3 RU3 A 52 75.801 8.743 -11.139 1.00 0.00 H Missing atom added: ATOM 28 H5 RU3 A 52 75.827 13.288 -11.796 1.00 0.00 H Missing atom added: ATOM 31 H3T RU3 A 52 80.199 11.697 -18.103 1.00 0.00 H Missing atom added: ATOM 3 OP3 U A 1 64.311 15.536 -28.267 1.00 42.09 O Number of atoms: 1658 Number of residues: 52 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 1785 Number of angles built: 3196 Number of dihedrals built: 4865 Number of impropers built: 348 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 1368672 Number of van der Waals pairs: 255132 Number of H-bonds built: 45 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 9 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 18540280866590.8594 kcal/mol (16280832109299.2012 without restraints) Performing minimization step: 2. Total energy = 6845212846530.9717 kcal/mol (6076829602277.6973 without restraints) Performing minimization step: 3. Total energy = 2728314053582.9863 kcal/mol (2444475471288.6387 without restraints) Performing minimization step: 4. Total energy = 1161189421318.3394 kcal/mol (1048634817737.4027 without restraints) Performing minimization step: 5. Total energy = 523162483443.0673 kcal/mol (475699388052.2828 without restraints) Performing minimization step: 6. Total energy = 247768669092.0923 kcal/mol (226647421009.7886 without restraints) Performing minimization step: 7. Total energy = 122646500282.1689 kcal/mol (112790281127.2562 without restraints) Performing minimization step: 8. Total energy = 63161563079.3694 kcal/mol (58363770882.4310 without restraints) Performing minimization step: 9. Total energy = 33715773083.4663 kcal/mol (31290355899.6565 without restraints) Performing minimization step: 10. Total energy = 18602149633.8800 kcal/mol (17333599208.9626 without restraints) Performing minimization step: 11. Total energy = 10587255075.9931 kcal/mol (9903025382.0144 without restraints) Performing minimization step: 12. Total energy = 6209165301.5648 kcal/mol (5829624157.6254 without restraints) Performing minimization step: 13. Total energy = 3752277394.0664 kcal/mol (3536288107.8191 without restraints) Performing minimization step: 14. Total energy = 2339043059.6616 kcal/mol (2213201849.0919 without restraints) Performing minimization step: 15. Total energy = 1507402441.9303 kcal/mol (1432467825.2617 without restraints) Performing minimization step: 16. Total energy = 1007500664.0411 kcal/mol (961954278.7895 without restraints) Performing minimization step: 17. Total energy = 700852422.8925 kcal/mol (672611089.5105 without restraints) Performing minimization step: 18. Total energy = 508895665.2224 kcal/mol (491019394.8720 without restraints) Performing minimization step: 19. Total energy = 386056537.5899 kcal/mol (374470797.2708 without restraints) Performing minimization step: 20. Total energy = 305318952.4817 kcal/mol (297580201.3535 without restraints) Performing minimization step: 21. Total energy = 250352873.3484 kcal/mol (244970059.7127 without restraints) Performing minimization step: 22. Total energy = 211177000.0365 kcal/mol (207236807.6897 without restraints) Performing minimization step: 23. Total energy = 181738160.4080 kcal/mol (178693293.2289 without restraints) Performing minimization step: 24. Total energy = 158472781.0522 kcal/mol (156008628.9995 without restraints) Performing minimization step: 25. Total energy = 139347425.4460 kcal/mol (137287379.7692 without restraints) Performing minimization step: 26. Total energy = 123201206.2812 kcal/mol (121443244.7136 without restraints) Performing minimization step: 27. Total energy = 109339736.7242 kcal/mol (107820436.9783 without restraints) Performing minimization step: 28. Total energy = 97314562.9485 kcal/mol (95990970.4259 without restraints) Performing minimization step: 29. Total energy = 86811870.7851 kcal/mol (85652634.1614 without restraints) Performing minimization step: 30. Total energy = 77596861.1663 kcal/mol (76577769.1047 without restraints) Performing minimization step: 31. Total energy = 69484977.7238 kcal/mol (68586578.6879 without restraints) Performing minimization step: 32. Total energy = 62326132.8420 kcal/mol (61532375.2479 without restraints) Performing minimization step: 33. Total energy = 55995441.6322 kcal/mol (55292838.9602 without restraints) Performing minimization step: 34. Total energy = 50387376.5113 kcal/mol (49764458.0124 without restraints) Performing minimization step: 35. Total energy = 45411823.7041 kcal/mol (44858749.9599 without restraints) Performing minimization step: 36. Total energy = 40991262.5705 kcal/mol (40499542.1270 without restraints) Performing minimization step: 37. Total energy = 37058649.1564 kcal/mol (36620920.8833 without restraints) Performing minimization step: 38. Total energy = 33555767.8148 kcal/mol (33165628.4046 without restraints) Performing minimization step: 39. Total energy = 30431910.7967 kcal/mol (30083774.7989 without restraints) Performing minimization step: 40. Total energy = 27642798.3670 kcal/mol (27331782.6427 without restraints) Performing minimization step: 41. Total energy = 25149682.0819 kcal/mol (24871509.2022 without restraints) Performing minimization step: 42. Total energy = 22918591.7883 kcal/mol (22669508.5097 without restraints) Performing minimization step: 43. Total energy = 20919698.0575 kcal/mol (20696406.0391 without restraints) Performing minimization step: 44. Total energy = 19126768.9942 kcal/mol (18926365.6058 without restraints) Performing minimization step: 45. Total energy = 17516705.2550 kcal/mol (17336632.7993 without restraints) Performing minimization step: 46. Total energy = 16069140.5489 kcal/mol (15907142.5607 without restraints) Performing minimization step: 47. Total energy = 14766097.3922 kcal/mol (14620180.9313 without restraints) Performing minimization step: 48. Total energy = 13591689.7677 kcal/mol (13460092.8132 without restraints) Performing minimization step: 49. Total energy = 12531865.7831 kcal/mol (12413028.9871 without restraints) Performing minimization step: 50. Total energy = 11574184.5564 kcal/mol (11466726.7335 without restraints) Performing minimization step: 51. Total energy = 10707622.4646 kcal/mol (10610319.2901 without restraints) Performing minimization step: 52. Total energy = 9922404.6272 kcal/mol (9834170.0947 without restraints) Performing minimization step: 53. Total energy = 9209858.0991 kcal/mol (9129728.3533 without restraints) Performing minimization step: 54. Total energy = 8562283.7509 kcal/mol (8489402.9644 without restraints) Performing minimization step: 55. Total energy = 7972844.2312 kcal/mol (7906452.2412 without restraints) Performing minimization step: 56. Total energy = 7435465.7730 kcal/mol (7374887.2316 without restraints) Performing minimization step: 57. Total energy = 6944751.9079 kcal/mol (6889386.7351 without restraints) Performing minimization step: 58. Total energy = 6495907.4280 kcal/mol (6445222.3856 without restraints) Performing minimization step: 59. Total energy = 6084671.1755 kcal/mol (6038192.4077 without restraints) Performing minimization step: 60. Total energy = 5707256.4527 kcal/mol (5664562.8617 without restraints) Performing minimization step: 61. Total energy = 5360298.0347 kcal/mol (5321015.3822 without restraints) Performing minimization step: 62. Total energy = 5040804.9373 kcal/mol (5004600.5805 without restraints) Performing minimization step: 63. Total energy = 4746118.2348 kcal/mol (4712696.4217 without restraints) Performing minimization step: 64. Total energy = 4473873.3468 kcal/mol (4442971.0080 without restraints) Performing minimization step: 65. Total energy = 4221966.3136 kcal/mol (4193349.3001 without restraints) Performing minimization step: 66. Total energy = 3988523.6581 kcal/mol (3961983.3805 without restraints) Performing minimization step: 67. Total energy = 3771875.4932 kcal/mol (3747225.9259 without restraints) Performing minimization step: 68. Total energy = 3570531.5780 kcal/mol (3547606.5953 without restraints) Performing minimization step: 69. Total energy = 3383160.0563 kcal/mol (3361811.0705 without restraints) Performing minimization step: 70. Total energy = 3208568.6346 kcal/mol (3188662.5083 without restraints) Performing minimization step: 71. Total energy = 3045687.9712 kcal/mol (3027105.1780 without restraints) Performing minimization step: 72. Total energy = 2893557.0619 kcal/mol (2876190.0708 without restraints) Performing minimization step: 73. Total energy = 2751310.4193 kcal/mol (2735062.2793 without restraints) Performing minimization step: 74. Total energy = 2618166.8524 kcal/mol (2602949.9553 without restraints) Performing minimization step: 75. Total energy = 2493419.6690 kcal/mol (2479154.6700 without restraints) Performing minimization step: 76. Total energy = 2376428.1300 kcal/mol (2363043.0070 without restraints) Performing minimization step: 77. Total energy = 2266610.0077 kcal/mol (2254039.2425 without restraints) Performing minimization step: 78. Total energy = 2163435.1019 kcal/mol (2151618.9667 without restraints) Performing minimization step: 79. Total energy = 2066419.5951 kcal/mol (2055303.5313 without restraints) Performing minimization step: 80. Total energy = 1975121.1317 kcal/mol (1964655.2079 without restraints) Performing minimization step: 81. Total energy = 1889134.5207 kcal/mol (1879272.9593 without restraints) Performing minimization step: 82. Total energy = 1808087.9820 kcal/mol (1798788.7452 without restraints) Performing minimization step: 83. Total energy = 1731639.8544 kcal/mol (1722864.2801 without restraints) Performing minimization step: 84. Total energy = 1659475.7038 kcal/mol (1651188.1863 without restraints) Performing minimization step: 85. Total energy = 1591305.7755 kcal/mol (1583473.4830 without restraints) Performing minimization step: 86. Total energy = 1526862.7417 kcal/mol (1519455.3662 without restraints) Performing minimization step: 87. Total energy = 1465899.7023 kcal/mol (1458889.2375 without restraints) Performing minimization step: 88. Total energy = 1408188.4072 kcal/mol (1401548.9503 without restraints) Performing minimization step: 89. Total energy = 1353517.6660 kcal/mol (1347225.2407 without restraints) Performing minimization step: 90. Total energy = 1301691.9233 kcal/mol (1295724.3198 without restraints) Performing minimization step: 91. Total energy = 1252529.9753 kcal/mol (1246866.6070 without restraints) Performing minimization step: 92. Total energy = 1205863.8115 kcal/mol (1200485.5850 without restraints) Performing minimization step: 93. Total energy = 1161537.5648 kcal/mol (1156426.7617 without restraints) Performing minimization step: 94. Total energy = 1119406.5570 kcal/mol (1114546.7265 without restraints) Performing minimization step: 95. Total energy = 1079336.4283 kcal/mol (1074712.2893 without restraints) Performing minimization step: 96. Total energy = 1041202.3425 kcal/mol (1036799.6935 without restraints) Performing minimization step: 97. Total energy = 1004888.2575 kcal/mol (1000693.8946 without restraints) Performing minimization step: 98. Total energy = 970286.2565 kcal/mol (966287.8974 without restraints) Performing minimization step: 99. Total energy = 937295.9333 kcal/mol (933482.1475 without restraints) Performing minimization step: 100. Total energy = 905823.8237 kcal/mol (902183.9689 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 101. Total energy = 875782.8846 kcal/mol (872307.0468 without restraints) Performing minimization step: 102. Total energy = 847092.0109 kcal/mol (843770.9503 without restraints) Performing minimization step: 103. Total energy = 819675.5906 kcal/mol (816500.6905 without restraints) Performing minimization step: 104. Total energy = 793463.0930 kcal/mol (790426.3137 without restraints) Performing minimization step: 105. Total energy = 768388.6894 kcal/mol (765482.5249 without restraints) Performing minimization step: 106. Total energy = 744390.9015 kcal/mol (741608.3393 without restraints) Performing minimization step: 107. Total energy = 721412.2770 kcal/mol (718746.7622 without restraints) Performing minimization step: 108. Total energy = 699399.0910 kcal/mol (696844.4915 without restraints) Performing minimization step: 109. Total energy = 678301.0683 kcal/mol (675851.6436 without restraints) Performing minimization step: 110. Total energy = 658071.1287 kcal/mol (655721.5015 without restraints) Performing minimization step: 111. Total energy = 638665.1521 kcal/mol (636410.2809 without restraints) Performing minimization step: 112. Total energy = 620041.7603 kcal/mol (617876.9155 without restraints) Performing minimization step: 113. Total energy = 602162.1179 kcal/mol (600082.8585 without restraints) Performing minimization step: 114. Total energy = 584989.7467 kcal/mol (582991.8997 without restraints) Performing minimization step: 115. Total energy = 568490.3565 kcal/mol (566569.9977 without restraints) Performing minimization step: 116. Total energy = 552631.6881 kcal/mol (550785.1242 without restraints) Performing minimization step: 117. Total energy = 537383.3692 kcal/mol (535607.1216 without restraints) Performing minimization step: 118. Total energy = 522716.7816 kcal/mol (521007.5711 without restraints) Performing minimization step: 119. Total energy = 508604.9385 kcal/mol (506959.6718 without restraints) Performing minimization step: 120. Total energy = 495022.3723 kcal/mol (493438.1291 without restraints) Performing minimization step: 121. Total energy = 481945.0304 kcal/mol (480419.0516 without restraints) Performing minimization step: 122. Total energy = 469350.1797 kcal/mol (467879.8565 without restraints) Performing minimization step: 123. Total energy = 457216.3188 kcal/mol (455799.1827 without restraints) Performing minimization step: 124. Total energy = 445523.0955 kcal/mol (444156.8095 without restraints) Performing minimization step: 125. Total energy = 434251.2328 kcal/mol (432933.5823 without restraints) Performing minimization step: 126. Total energy = 423382.4602 kcal/mol (422111.3455 without restraints) Performing minimization step: 127. Total energy = 412899.4479 kcal/mol (411672.8770 without restraints) Performing minimization step: 128. Total energy = 402785.7497 kcal/mol (401601.8313 without restraints) Performing minimization step: 129. Total energy = 393025.7471 kcal/mol (391882.6847 without restraints) Performing minimization step: 130. Total energy = 383604.5989 kcal/mol (382500.6847 without restraints) Performing minimization step: 131. Total energy = 374508.1951 kcal/mol (373441.8051 without restraints) Performing minimization step: 132. Total energy = 365723.1121 kcal/mol (364692.7010 without restraints) Performing minimization step: 133. Total energy = 357236.5737 kcal/mol (356240.6700 without restraints) Performing minimization step: 134. Total energy = 349036.4128 kcal/mol (348073.6151 without restraints) Performing minimization step: 135. Total energy = 341111.0369 kcal/mol (340180.0096 without restraints) Performing minimization step: 136. Total energy = 333449.3959 kcal/mol (332548.8655 without restraints) Performing minimization step: 137. Total energy = 326040.9516 kcal/mol (325169.7034 without restraints) Performing minimization step: 138. Total energy = 318875.6497 kcal/mol (318032.5246 without restraints) Performing minimization step: 139. Total energy = 311943.8939 kcal/mol (311127.7850 without restraints) Performing minimization step: 140. Total energy = 305236.5207 kcal/mol (304446.3712 without restraints) Performing minimization step: 141. Total energy = 298744.7770 kcal/mol (297979.5772 without restraints) Performing minimization step: 142. Total energy = 292460.2987 kcal/mol (291719.0835 without restraints) Performing minimization step: 143. Total energy = 286375.0904 kcal/mol (285656.9370 without restraints) Performing minimization step: 144. Total energy = 280481.5065 kcal/mol (279785.5324 without restraints) Performing minimization step: 145. Total energy = 274772.2337 kcal/mol (274097.5948 without restraints) Performing minimization step: 146. Total energy = 269240.2746 kcal/mol (268586.1629 without restraints) Performing minimization step: 147. Total energy = 263878.9318 kcal/mol (263244.5738 without restraints) Performing minimization step: 148. Total energy = 258681.7931 kcal/mol (258066.4484 without restraints) Performing minimization step: 149. Total energy = 253642.7182 kcal/mol (253045.6775 without restraints) Performing minimization step: 150. Total energy = 248755.8253 kcal/mol (248176.4091 without restraints) Performing minimization step: 151. Total energy = 244015.4789 kcal/mol (243453.0362 without restraints) Performing minimization step: 152. Total energy = 239416.2783 kcal/mol (238870.1849 without restraints) Performing minimization step: 153. Total energy = 234953.0465 kcal/mol (234422.7041 without restraints) Performing minimization step: 154. Total energy = 230620.8199 kcal/mol (230105.6550 without restraints) Performing minimization step: 155. Total energy = 226414.8389 kcal/mol (225914.3012 without restraints) Performing minimization step: 156. Total energy = 222330.5380 kcal/mol (221844.0998 without restraints) Performing minimization step: 157. Total energy = 218363.5369 kcal/mol (217890.6919 without restraints) Performing minimization step: 158. Total energy = 214509.6342 kcal/mol (214049.8964 without restraints) Performing minimization step: 159. Total energy = 210764.7964 kcal/mol (210317.6996 without restraints) Performing minimization step: 160. Total energy = 207125.1525 kcal/mol (206690.2490 without restraints) Performing minimization step: 161. Total energy = 203586.9867 kcal/mol (203163.8468 without restraints) Performing minimization step: 162. Total energy = 200146.7305 kcal/mol (199734.9414 without restraints) Performing minimization step: 163. Total energy = 196800.9582 kcal/mol (196400.1237 without restraints) Performing minimization step: 164. Total energy = 193546.3790 kcal/mol (193156.1184 without restraints) Performing minimization step: 165. Total energy = 190379.8319 kcal/mol (189999.7796 without restraints) Performing minimization step: 166. Total energy = 187298.2809 kcal/mol (186928.0855 without restraints) Performing minimization step: 167. Total energy = 184298.8083 kcal/mol (183938.1324 without restraints) Performing minimization step: 168. Total energy = 181378.6107 kcal/mol (181027.1298 without restraints) Performing minimization step: 169. Total energy = 178534.9940 kcal/mol (178192.3964 without restraints) Performing minimization step: 170. Total energy = 175765.3686 kcal/mol (175431.3547 without restraints) Performing minimization step: 171. Total energy = 173067.2453 kcal/mol (172741.5270 without restraints) Performing minimization step: 172. Total energy = 170438.2313 kcal/mol (170120.5316 without restraints) Performing minimization step: 173. Total energy = 167876.0256 kcal/mol (167566.0783 without restraints) Performing minimization step: 174. Total energy = 165378.4159 kcal/mol (165075.9648 without restraints) Performing minimization step: 175. Total energy = 162943.2747 kcal/mol (162648.0737 without restraints) Performing minimization step: 176. Total energy = 160568.5556 kcal/mol (160280.3676 without restraints) Performing minimization step: 177. Total energy = 158252.2901 kcal/mol (157970.8873 without restraints) Performing minimization step: 178. Total energy = 155992.5848 kcal/mol (155717.7480 without restraints) Performing minimization step: 179. Total energy = 153787.6180 kcal/mol (153519.1363 without restraints) Performing minimization step: 180. Total energy = 151635.6369 kcal/mol (151373.3073 without restraints) Performing minimization step: 181. Total energy = 149534.9548 kcal/mol (149278.5820 without restraints) Performing minimization step: 182. Total energy = 147483.9481 kcal/mol (147233.3441 without restraints) Performing minimization step: 183. Total energy = 145481.0548 kcal/mol (145236.0386 without restraints) Performing minimization step: 184. Total energy = 143524.7702 kcal/mol (143285.1677 without restraints) Performing minimization step: 185. Total energy = 141613.6466 kcal/mol (141379.2901 without restraints) Performing minimization step: 186. Total energy = 139746.2898 kcal/mol (139517.0177 without restraints) Performing minimization step: 187. Total energy = 137921.3571 kcal/mol (137697.0140 without restraints) Performing minimization step: 188. Total energy = 136137.5557 kcal/mol (135917.9917 without restraints) Performing minimization step: 189. Total energy = 134393.6400 kcal/mol (134178.7108 without restraints) Performing minimization step: 190. Total energy = 132688.4103 kcal/mol (132477.9771 without restraints) Performing minimization step: 191. Total energy = 131020.7108 kcal/mol (130814.6395 without restraints) Performing minimization step: 192. Total energy = 129389.4278 kcal/mol (129187.5893 without restraints) Performing minimization step: 193. Total energy = 127793.4876 kcal/mol (127595.7576 without restraints) Performing minimization step: 194. Total energy = 126231.8560 kcal/mol (126038.1146 without restraints) Performing minimization step: 195. Total energy = 124703.5358 kcal/mol (124513.6674 without restraints) Performing minimization step: 196. Total energy = 123207.5655 kcal/mol (123021.4585 without restraints) Performing minimization step: 197. Total energy = 121743.0173 kcal/mol (121560.5643 without restraints) Performing minimization step: 198. Total energy = 120308.9974 kcal/mol (120130.0948 without restraints) Performing minimization step: 199. Total energy = 118904.6433 kcal/mol (118729.1911 without restraints) Performing minimization step: 200. Total energy = 117529.1227 kcal/mol (117357.0243 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 201. Total energy = 116181.6327 kcal/mol (116012.7950 without restraints) Performing minimization step: 202. Total energy = 114861.3984 kcal/mol (114695.7316 without restraints) Performing minimization step: 203. Total energy = 113567.6717 kcal/mol (113405.0890 without restraints) Performing minimization step: 204. Total energy = 112299.7304 kcal/mol (112140.1478 without restraints) Performing minimization step: 205. Total energy = 111056.8775 kcal/mol (110900.2146 without restraints) Performing minimization step: 206. Total energy = 109838.4396 kcal/mol (109684.6179 without restraints) Performing minimization step: 207. Total energy = 108643.7658 kcal/mol (108492.7099 without restraints) Performing minimization step: 208. Total energy = 107472.2277 kcal/mol (107323.8647 without restraints) Performing minimization step: 209. Total energy = 106323.2180 kcal/mol (106177.4773 without restraints) Performing minimization step: 210. Total energy = 105196.1495 kcal/mol (105052.9630 without restraints) Performing minimization step: 211. Total energy = 104090.4546 kcal/mol (103949.7565 without restraints) Performing minimization step: 212. Total energy = 103005.5849 kcal/mol (102867.3114 without restraints) Performing minimization step: 213. Total energy = 101941.0092 kcal/mol (101805.0987 without restraints) Performing minimization step: 214. Total energy = 100896.2140 kcal/mol (100762.6068 without restraints) Performing minimization step: 215. Total energy = 99870.7027 kcal/mol (99739.3412 without restraints) Performing minimization step: 216. Total energy = 98863.9944 kcal/mol (98734.8227 without restraints) Performing minimization step: 217. Total energy = 97875.6238 kcal/mol (97748.5878 without restraints) Performing minimization step: 218. Total energy = 96905.1403 kcal/mol (96780.1876 without restraints) Performing minimization step: 219. Total energy = 95952.1074 kcal/mol (95829.1874 without restraints) Performing minimization step: 220. Total energy = 95016.1026 kcal/mol (94895.1663 without restraints) Performing minimization step: 221. Total energy = 94096.7163 kcal/mol (93977.7158 without restraints) Performing minimization step: 222. Total energy = 93193.5517 kcal/mol (93076.4411 without restraints) Performing minimization step: 223. Total energy = 92306.2240 kcal/mol (92190.9585 without restraints) Performing minimization step: 224. Total energy = 91434.3605 kcal/mol (91320.8968 without restraints) Performing minimization step: 225. Total energy = 90577.5994 kcal/mol (90465.8953 without restraints) Performing minimization step: 226. Total energy = 89735.5900 kcal/mol (89625.6048 without restraints) Performing minimization step: 227. Total energy = 88907.9920 kcal/mol (88799.6862 without restraints) Performing minimization step: 228. Total energy = 88094.4753 kcal/mol (87987.8104 without restraints) Performing minimization step: 229. Total energy = 87294.7195 kcal/mol (87189.6582 without restraints) Performing minimization step: 230. Total energy = 86508.4133 kcal/mol (86404.9195 without restraints) Performing minimization step: 231. Total energy = 85735.2548 kcal/mol (85633.2933 without restraints) Performing minimization step: 232. Total energy = 84974.9505 kcal/mol (84874.4871 without restraints) Performing minimization step: 233. Total energy = 84227.2154 kcal/mol (84128.2169 without restraints) Performing minimization step: 234. Total energy = 83491.7727 kcal/mol (83394.2071 without restraints) Performing minimization step: 235. Total energy = 82768.3531 kcal/mol (82672.1887 without restraints) Performing minimization step: 236. Total energy = 82056.6949 kcal/mol (81961.9015 without restraints) Performing minimization step: 237. Total energy = 81356.5439 kcal/mol (81263.0918 without restraints) Performing minimization step: 238. Total energy = 80667.6526 kcal/mol (80575.5131 without restraints) Performing minimization step: 239. Total energy = 79989.7806 kcal/mol (79898.9255 without restraints) Performing minimization step: 240. Total energy = 79322.6937 kcal/mol (79233.0958 without restraints) Performing minimization step: 241. Total energy = 78666.1643 kcal/mol (78577.7972 without restraints) Performing minimization step: 242. Total energy = 78019.9705 kcal/mol (77932.8081 without restraints) Performing minimization step: 243. Total energy = 77383.8965 kcal/mol (77297.9139 without restraints) Performing minimization step: 244. Total energy = 76757.7324 kcal/mol (76672.9051 without restraints) Performing minimization step: 245. Total energy = 76141.2735 kcal/mol (76057.5774 without restraints) Performing minimization step: 246. Total energy = 75534.3205 kcal/mol (75451.7326 without restraints) Performing minimization step: 247. Total energy = 74936.6791 kcal/mol (74855.1767 without restraints) Performing minimization step: 248. Total energy = 74348.1601 kcal/mol (74267.7212 without restraints) Performing minimization step: 249. Total energy = 73768.5796 kcal/mol (73689.1826 without restraints) Performing minimization step: 250. Total energy = 73197.7573 kcal/mol (73119.3813 without restraints) Performing minimization step: 251. Total energy = 72635.5180 kcal/mol (72558.1426 without restraints) Performing minimization step: 252. Total energy = 72081.6912 kcal/mol (72005.2964 without restraints) Performing minimization step: 253. Total energy = 71536.1103 kcal/mol (71460.6768 without restraints) Performing minimization step: 254. Total energy = 70998.6129 kcal/mol (70924.1216 without restraints) Performing minimization step: 255. Total energy = 70469.0402 kcal/mol (70395.4726 without restraints) Performing minimization step: 256. Total energy = 69947.2375 kcal/mol (69874.5757 without restraints) Performing minimization step: 257. Total energy = 69433.0540 kcal/mol (69361.2803 without restraints) Performing minimization step: 258. Total energy = 68926.3424 kcal/mol (68855.4396 without restraints) Performing minimization step: 259. Total energy = 68426.9586 kcal/mol (68356.9099 without restraints) Performing minimization step: 260. Total energy = 67934.7623 kcal/mol (67865.5514 without restraints) Performing minimization step: 261. Total energy = 67449.6167 kcal/mol (67381.2275 without restraints) Performing minimization step: 262. Total energy = 66971.3876 kcal/mol (66903.8046 without restraints) Performing minimization step: 263. Total energy = 66499.9442 kcal/mol (66433.1518 without restraints) Performing minimization step: 264. Total energy = 66035.1588 kcal/mol (65969.1425 without restraints) Performing minimization step: 265. Total energy = 65576.9068 kcal/mol (65511.6519 without restraints) Performing minimization step: 266. Total energy = 65125.0660 kcal/mol (65060.5582 without restraints) Performing minimization step: 267. Total energy = 64679.5173 kcal/mol (64615.7428 without restraints) Performing minimization step: 268. Total energy = 64240.1443 kcal/mol (64177.0893 without restraints) Performing minimization step: 269. Total energy = 63806.8329 kcal/mol (63744.4842 without restraints) Performing minimization step: 270. Total energy = 63379.4718 kcal/mol (63317.8165 without restraints) Performing minimization step: 271. Total energy = 62957.9526 kcal/mol (62896.9779 without restraints) Performing minimization step: 272. Total energy = 62542.1686 kcal/mol (62481.8620 without restraints) Performing minimization step: 273. Total energy = 62132.0153 kcal/mol (62072.3647 without restraints) Performing minimization step: 274. Total energy = 61727.3912 kcal/mol (61668.3847 without restraints) Performing minimization step: 275. Total energy = 61328.1967 kcal/mol (61269.8227 without restraints) Performing minimization step: 276. Total energy = 60934.3348 kcal/mol (60876.5821 without restraints) Performing minimization step: 277. Total energy = 60545.7100 kcal/mol (60488.5671 without restraints) Performing minimization step: 278. Total energy = 60162.2288 kcal/mol (60105.6851 without restraints) Performing minimization step: 279. Total energy = 59783.8001 kcal/mol (59727.8447 without restraints) Performing minimization step: 280. Total energy = 59410.3348 kcal/mol (59354.9575 without restraints) Performing minimization step: 281. Total energy = 59041.7454 kcal/mol (58986.9360 without restraints) Performing minimization step: 282. Total energy = 58677.9465 kcal/mol (58623.6948 without restraints) Performing minimization step: 283. Total energy = 58318.8542 kcal/mol (58265.1506 without restraints) Performing minimization step: 284. Total energy = 57964.3869 kcal/mol (57911.2217 without restraints) Performing minimization step: 285. Total energy = 57614.4638 kcal/mol (57561.8277 without restraints) Performing minimization step: 286. Total energy = 57269.0068 kcal/mol (57216.8906 without restraints) Performing minimization step: 287. Total energy = 56927.9388 kcal/mol (56876.3334 without restraints) Performing minimization step: 288. Total energy = 56591.1843 kcal/mol (56540.0811 without restraints) Performing minimization step: 289. Total energy = 56258.6698 kcal/mol (56208.0601 without restraints) Performing minimization step: 290. Total energy = 55930.3226 kcal/mol (55880.1979 without restraints) Performing minimization step: 291. Total energy = 55606.0725 kcal/mol (55556.4245 without restraints) Performing minimization step: 292. Total energy = 55285.8495 kcal/mol (55236.6702 without restraints) Performing minimization step: 293. Total energy = 54969.5861 kcal/mol (54920.8675 without restraints) Performing minimization step: 294. Total energy = 54657.2157 kcal/mol (54608.9500 without restraints) Performing minimization step: 295. Total energy = 54348.6730 kcal/mol (54300.8526 without restraints) Performing minimization step: 296. Total energy = 54043.8941 kcal/mol (53996.5117 without restraints) Performing minimization step: 297. Total energy = 53742.8166 kcal/mol (53695.8646 without restraints) Performing minimization step: 298. Total energy = 53445.3787 kcal/mol (53398.8501 without restraints) Performing minimization step: 299. Total energy = 53151.5207 kcal/mol (53105.4085 without restraints) Performing minimization step: 300. Total energy = 52861.1840 kcal/mol (52815.4813 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 301. Total energy = 52574.3100 kcal/mol (52529.0099 without restraints) Performing minimization step: 302. Total energy = 52290.8424 kcal/mol (52245.9383 without restraints) Performing minimization step: 303. Total energy = 52010.7253 kcal/mol (51966.2107 without restraints) Performing minimization step: 304. Total energy = 51733.9051 kcal/mol (51689.7739 without restraints) Performing minimization step: 305. Total energy = 51460.3278 kcal/mol (51416.5736 without restraints) Performing minimization step: 306. Total energy = 51189.9418 kcal/mol (51146.5584 without restraints) Performing minimization step: 307. Total energy = 50922.6953 kcal/mol (50879.6768 without restraints) Performing minimization step: 308. Total energy = 50658.5377 kcal/mol (50615.8782 without restraints) Performing minimization step: 309. Total energy = 50397.4201 kcal/mol (50355.1138 without restraints) Performing minimization step: 310. Total energy = 50139.2939 kcal/mol (50097.3353 without restraints) Performing minimization step: 311. Total energy = 49884.1119 kcal/mol (49842.4952 without restraints) Performing minimization step: 312. Total energy = 49631.8274 kcal/mol (49590.5473 without restraints) Performing minimization step: 313. Total energy = 49382.3945 kcal/mol (49341.4457 without restraints) Performing minimization step: 314. Total energy = 49135.7884 kcal/mol (49095.1459 without restraints) Performing minimization step: 315. Total energy = 48891.9064 kcal/mol (48851.6045 without restraints) Performing minimization step: 316. Total energy = 48650.7642 kcal/mol (48610.7782 without restraints) Performing minimization step: 317. Total energy = 48412.2999 kcal/mol (48372.6248 without restraints) Performing minimization step: 318. Total energy = 48176.4723 kcal/mol (48137.1032 without restraints) Performing minimization step: 319. Total energy = 47943.2402 kcal/mol (47904.1725 without restraints) Performing minimization step: 320. Total energy = 47712.5637 kcal/mol (47673.7926 without restraints) Performing minimization step: 321. Total energy = 47484.4042 kcal/mol (47445.9252 without restraints) Performing minimization step: 322. Total energy = 47258.7222 kcal/mol (47220.5308 without restraints) Performing minimization step: 323. Total energy = 47035.4806 kcal/mol (46997.5724 without restraints) Performing minimization step: 324. Total energy = 46814.6417 kcal/mol (46777.0123 without restraints) Performing minimization step: 325. Total energy = 46596.1704 kcal/mol (46558.8156 without restraints) Performing minimization step: 326. Total energy = 46380.0304 kcal/mol (46342.9461 without restraints) Performing minimization step: 327. Total energy = 46166.1865 kcal/mol (46129.3685 without restraints) Performing minimization step: 328. Total energy = 45954.6043 kcal/mol (45918.0484 without restraints) Performing minimization step: 329. Total energy = 45745.2500 kcal/mol (45708.9525 without restraints) Performing minimization step: 330. Total energy = 45538.0908 kcal/mol (45502.0478 without restraints) Performing minimization step: 331. Total energy = 45333.0939 kcal/mol (45297.3017 without restraints) Performing minimization step: 332. Total energy = 45130.2275 kcal/mol (45094.6822 without restraints) Performing minimization step: 333. Total energy = 44929.4601 kcal/mol (44894.1579 without restraints) Performing minimization step: 334. Total energy = 44730.7606 kcal/mol (44695.6982 without restraints) Performing minimization step: 335. Total energy = 44534.0989 kcal/mol (44499.2728 without restraints) Performing minimization step: 336. Total energy = 44339.4456 kcal/mol (44304.8520 without restraints) Performing minimization step: 337. Total energy = 44146.7712 kcal/mol (44112.4068 without restraints) Performing minimization step: 338. Total energy = 43956.0472 kcal/mol (43921.9088 without restraints) Performing minimization step: 339. Total energy = 43767.2453 kcal/mol (43733.3296 without restraints) Performing minimization step: 340. Total energy = 43580.3380 kcal/mol (43546.6416 without restraints) Performing minimization step: 341. Total energy = 43395.2979 kcal/mol (43361.8178 without restraints) Performing minimization step: 342. Total energy = 43212.0986 kcal/mol (43178.8316 without restraints) Performing minimization step: 343. Total energy = 43030.7132 kcal/mol (42997.6560 without restraints) Performing minimization step: 344. Total energy = 42851.1164 kcal/mol (42818.2664 without restraints) Performing minimization step: 345. Total energy = 42673.2831 kcal/mol (42640.6372 without restraints) Performing minimization step: 346. Total energy = 42497.1881 kcal/mol (42464.7433 without restraints) Performing minimization step: 347. Total energy = 42322.8069 kcal/mol (42290.5605 without restraints) Performing minimization step: 348. Total energy = 42150.1155 kcal/mol (42118.0646 without restraints) Performing minimization step: 349. Total energy = 41979.0903 kcal/mol (41947.2321 without restraints) Performing minimization step: 350. Total energy = 41809.7081 kcal/mol (41778.0399 without restraints) Performing minimization step: 351. Total energy = 41641.9460 kcal/mol (41610.4652 without restraints) Performing minimization step: 352. Total energy = 41475.7816 kcal/mol (41444.4855 without restraints) Performing minimization step: 353. Total energy = 41311.1929 kcal/mol (41280.0790 without restraints) Performing minimization step: 354. Total energy = 41148.1578 kcal/mol (41117.2236 without restraints) Performing minimization step: 355. Total energy = 40986.6557 kcal/mol (40955.8986 without restraints) Performing minimization step: 356. Total energy = 40826.6656 kcal/mol (40796.0832 without restraints) Performing minimization step: 357. Total energy = 40668.1663 kcal/mol (40637.7562 without restraints) Performing minimization step: 358. Total energy = 40511.1378 kcal/mol (40480.8977 without restraints) Performing minimization step: 359. Total energy = 40355.5603 kcal/mol (40325.4878 without restraints) Performing minimization step: 360. Total energy = 40201.4146 kcal/mol (40171.5074 without restraints) Performing minimization step: 361. Total energy = 40048.6805 kcal/mol (40018.9364 without restraints) Performing minimization step: 362. Total energy = 39897.3393 kcal/mol (39867.7561 without restraints) Performing minimization step: 363. Total energy = 39747.3727 kcal/mol (39717.9482 without restraints) Performing minimization step: 364. Total energy = 39598.7622 kcal/mol (39569.4943 without restraints) Performing minimization step: 365. Total energy = 39451.4900 kcal/mol (39422.3765 without restraints) Performing minimization step: 366. Total energy = 39305.5382 kcal/mol (39276.5771 without restraints) Performing minimization step: 367. Total energy = 39160.8893 kcal/mol (39132.0786 without restraints) Performing minimization step: 368. Total energy = 39017.5264 kcal/mol (38988.8641 without restraints) Performing minimization step: 369. Total energy = 38875.4323 kcal/mol (38846.9164 without restraints) Performing minimization step: 370. Total energy = 38734.5905 kcal/mol (38706.2190 without restraints) Performing minimization step: 371. Total energy = 38594.9848 kcal/mol (38566.7559 without restraints) Performing minimization step: 372. Total energy = 38456.5989 kcal/mol (38428.5106 without restraints) Performing minimization step: 373. Total energy = 38319.4171 kcal/mol (38291.4677 without restraints) Performing minimization step: 374. Total energy = 38183.4237 kcal/mol (38155.6113 without restraints) Performing minimization step: 375. Total energy = 38048.6037 kcal/mol (38020.9265 without restraints) Performing minimization step: 376. Total energy = 37914.9415 kcal/mol (37887.3979 without restraints) Performing minimization step: 377. Total energy = 37782.4228 kcal/mol (37755.0110 without restraints) Performing minimization step: 378. Total energy = 37651.0326 kcal/mol (37623.7508 without restraints) Performing minimization step: 379. Total energy = 37520.7570 kcal/mol (37493.6035 without restraints) Performing minimization step: 380. Total energy = 37391.5814 kcal/mol (37364.5547 without restraints) Performing minimization step: 381. Total energy = 37263.4920 kcal/mol (37236.5905 without restraints) Performing minimization step: 382. Total energy = 37136.4749 kcal/mol (37109.6969 without restraints) Performing minimization step: 383. Total energy = 37010.5168 kcal/mol (36983.8607 without restraints) Performing minimization step: 384. Total energy = 36885.6044 kcal/mol (36859.0688 without restraints) Performing minimization step: 385. Total energy = 36761.7245 kcal/mol (36735.3077 without restraints) Performing minimization step: 386. Total energy = 36638.8648 kcal/mol (36612.5654 without restraints) Performing minimization step: 387. Total energy = 36517.0119 kcal/mol (36490.8284 without restraints) Performing minimization step: 388. Total energy = 36396.1538 kcal/mol (36370.0848 without restraints) Performing minimization step: 389. Total energy = 36276.2780 kcal/mol (36250.3220 without restraints) Performing minimization step: 390. Total energy = 36157.3722 kcal/mol (36131.5279 without restraints) Performing minimization step: 391. Total energy = 36039.4247 kcal/mol (36013.6906 without restraints) Performing minimization step: 392. Total energy = 35922.4237 kcal/mol (35896.7985 without restraints) Performing minimization step: 393. Total energy = 35806.3577 kcal/mol (35780.8401 without restraints) Performing minimization step: 394. Total energy = 35691.2154 kcal/mol (35665.8040 without restraints) Performing minimization step: 395. Total energy = 35576.9855 kcal/mol (35551.6789 without restraints) Performing minimization step: 396. Total energy = 35463.6567 kcal/mol (35438.4538 without restraints) Performing minimization step: 397. Total energy = 35351.2186 kcal/mol (35326.1181 without restraints) Performing minimization step: 398. Total energy = 35239.6600 kcal/mol (35214.6606 without restraints) Performing minimization step: 399. Total energy = 35128.9706 kcal/mol (35104.0711 without restraints) Performing minimization step: 400. Total energy = 35019.1400 kcal/mol (34994.3392 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 401. Total energy = 34910.1576 kcal/mol (34885.4542 without restraints) Performing minimization step: 402. Total energy = 34802.0136 kcal/mol (34777.4065 without restraints) Performing minimization step: 403. Total energy = 34694.6982 kcal/mol (34670.1863 without restraints) Performing minimization step: 404. Total energy = 34588.2016 kcal/mol (34563.7838 without restraints) Performing minimization step: 405. Total energy = 34482.5142 kcal/mol (34458.1893 without restraints) Performing minimization step: 406. Total energy = 34377.6261 kcal/mol (34353.3930 without restraints) Performing minimization step: 407. Total energy = 34273.5283 kcal/mol (34249.3860 without restraints) Performing minimization step: 408. Total energy = 34170.2115 kcal/mol (34146.1589 without restraints) Performing minimization step: 409. Total energy = 34067.6665 kcal/mol (34043.7025 without restraints) Performing minimization step: 410. Total energy = 33965.8846 kcal/mol (33942.0081 without restraints) Performing minimization step: 411. Total energy = 33864.8565 kcal/mol (33841.0666 without restraints) Performing minimization step: 412. Total energy = 33764.5738 kcal/mol (33740.8695 without restraints) Performing minimization step: 413. Total energy = 33665.0273 kcal/mol (33641.4075 without restraints) Performing minimization step: 414. Total energy = 33566.2093 kcal/mol (33542.6731 without restraints) Performing minimization step: 415. Total energy = 33468.1113 kcal/mol (33444.6577 without restraints) Performing minimization step: 416. Total energy = 33370.7251 kcal/mol (33347.3531 without restraints) Performing minimization step: 417. Total energy = 33274.0423 kcal/mol (33250.7511 without restraints) Performing minimization step: 418. Total energy = 33178.0552 kcal/mol (33154.8437 without restraints) Performing minimization step: 419. Total energy = 33082.7555 kcal/mol (33059.6229 without restraints) Performing minimization step: 420. Total energy = 32988.1360 kcal/mol (32965.0814 without restraints) Performing minimization step: 421. Total energy = 32894.1888 kcal/mol (32871.2114 without restraints) Performing minimization step: 422. Total energy = 32800.9064 kcal/mol (32778.0052 without restraints) Performing minimization step: 423. Total energy = 32708.2813 kcal/mol (32685.4554 without restraints) Performing minimization step: 424. Total energy = 32616.3063 kcal/mol (32593.5552 without restraints) Performing minimization step: 425. Total energy = 32524.9741 kcal/mol (32502.2965 without restraints) Performing minimization step: 426. Total energy = 32434.2774 kcal/mol (32411.6726 without restraints) Performing minimization step: 427. Total energy = 32344.2093 kcal/mol (32321.6766 without restraints) Performing minimization step: 428. Total energy = 32254.7628 kcal/mol (32232.3013 without restraints) Performing minimization step: 429. Total energy = 32165.9315 kcal/mol (32143.5406 without restraints) Performing minimization step: 430. Total energy = 32077.7079 kcal/mol (32055.3866 without restraints) Performing minimization step: 431. Total energy = 31990.0858 kcal/mol (31967.8335 without restraints) Performing minimization step: 432. Total energy = 31903.0587 kcal/mol (31880.8746 without restraints) Performing minimization step: 433. Total energy = 31816.6203 kcal/mol (31794.5036 without restraints) Performing minimization step: 434. Total energy = 31730.7632 kcal/mol (31708.7132 without restraints) Performing minimization step: 435. Total energy = 31645.4822 kcal/mol (31623.4981 without restraints) Performing minimization step: 436. Total energy = 31560.7705 kcal/mol (31538.8517 without restraints) Performing minimization step: 437. Total energy = 31476.6223 kcal/mol (31454.7681 without restraints) Performing minimization step: 438. Total energy = 31393.0316 kcal/mol (31371.2412 without restraints) Performing minimization step: 439. Total energy = 31309.9925 kcal/mol (31288.2654 without restraints) Performing minimization step: 440. Total energy = 31227.4988 kcal/mol (31205.8342 without restraints) Performing minimization step: 441. Total energy = 31145.5446 kcal/mol (31123.9418 without restraints) Performing minimization step: 442. Total energy = 31064.1246 kcal/mol (31042.5830 without restraints) Performing minimization step: 443. Total energy = 30983.2330 kcal/mol (30961.7520 without restraints) Performing minimization step: 444. Total energy = 30902.8644 kcal/mol (30881.4432 without restraints) Performing minimization step: 445. Total energy = 30823.0130 kcal/mol (30801.6511 without restraints) Performing minimization step: 446. Total energy = 30743.6736 kcal/mol (30722.3703 without restraints) Performing minimization step: 447. Total energy = 30664.8407 kcal/mol (30643.5955 without restraints) Performing minimization step: 448. Total energy = 30586.5089 kcal/mol (30565.3212 without restraints) Performing minimization step: 449. Total energy = 30508.6735 kcal/mol (30487.5426 without restraints) Performing minimization step: 450. Total energy = 30431.3298 kcal/mol (30410.2552 without restraints) Performing minimization step: 451. Total energy = 30354.4713 kcal/mol (30333.4523 without restraints) Performing minimization step: 452. Total energy = 30278.0937 kcal/mol (30257.1299 without restraints) Performing minimization step: 453. Total energy = 30202.1921 kcal/mol (30181.2828 without restraints) Performing minimization step: 454. Total energy = 30126.7614 kcal/mol (30105.9061 without restraints) Performing minimization step: 455. Total energy = 30051.7973 kcal/mol (30030.9953 without restraints) Performing minimization step: 456. Total energy = 29977.2945 kcal/mol (29956.5454 without restraints) Performing minimization step: 457. Total energy = 29903.2487 kcal/mol (29882.5520 without restraints) Performing minimization step: 458. Total energy = 29829.6553 kcal/mol (29809.0104 without restraints) Performing minimization step: 459. Total energy = 29756.5094 kcal/mol (29735.9158 without restraints) Performing minimization step: 460. Total energy = 29683.8068 kcal/mol (29663.2641 without restraints) Performing minimization step: 461. Total energy = 29611.5428 kcal/mol (29591.0504 without restraints) Performing minimization step: 462. Total energy = 29539.7134 kcal/mol (29519.2708 without restraints) Performing minimization step: 463. Total energy = 29468.3140 kcal/mol (29447.9207 without restraints) Performing minimization step: 464. Total energy = 29397.3411 kcal/mol (29376.9967 without restraints) Performing minimization step: 465. Total energy = 29326.7890 kcal/mol (29306.4928 without restraints) Performing minimization step: 466. Total energy = 29256.6547 kcal/mol (29236.4063 without restraints) Performing minimization step: 467. Total energy = 29186.9335 kcal/mol (29166.7326 without restraints) Performing minimization step: 468. Total energy = 29117.6215 kcal/mol (29097.4676 without restraints) Performing minimization step: 469. Total energy = 29048.7149 kcal/mol (29028.6074 without restraints) Performing minimization step: 470. Total energy = 28980.2093 kcal/mol (28960.1478 without restraints) Performing minimization step: 471. Total energy = 28912.1010 kcal/mol (28892.0850 without restraints) Performing minimization step: 472. Total energy = 28844.3862 kcal/mol (28824.4154 without restraints) Performing minimization step: 473. Total energy = 28777.0612 kcal/mol (28757.1352 without restraints) Performing minimization step: 474. Total energy = 28710.1220 kcal/mol (28690.2402 without restraints) Performing minimization step: 475. Total energy = 28643.5649 kcal/mol (28623.7270 without restraints) Performing minimization step: 476. Total energy = 28577.3866 kcal/mol (28557.5921 without restraints) Performing minimization step: 477. Total energy = 28511.5830 kcal/mol (28491.8316 without restraints) Performing minimization step: 478. Total energy = 28446.1511 kcal/mol (28426.4424 without restraints) Performing minimization step: 479. Total energy = 28381.0863 kcal/mol (28361.4197 without restraints) Performing minimization step: 480. Total energy = 28316.3864 kcal/mol (28296.7618 without restraints) Performing minimization step: 481. Total energy = 28252.0471 kcal/mol (28232.4639 without restraints) Performing minimization step: 482. Total energy = 28188.0653 kcal/mol (28168.5231 without restraints) Performing minimization step: 483. Total energy = 28124.4375 kcal/mol (28104.9360 without restraints) Performing minimization step: 484. Total energy = 28061.1603 kcal/mol (28041.6992 without restraints) Performing minimization step: 485. Total energy = 27998.2309 kcal/mol (27978.8096 without restraints) Performing minimization step: 486. Total energy = 27935.6454 kcal/mol (27916.2638 without restraints) Performing minimization step: 487. Total energy = 27873.4018 kcal/mol (27854.0594 without restraints) Performing minimization step: 488. Total energy = 27811.4950 kcal/mol (27792.1914 without restraints) Performing minimization step: 489. Total energy = 27749.9232 kcal/mol (27730.6582 without restraints) Performing minimization step: 490. Total energy = 27688.6833 kcal/mol (27669.4564 without restraints) Performing minimization step: 491. Total energy = 27627.7719 kcal/mol (27608.5828 without restraints) Performing minimization step: 492. Total energy = 27567.1859 kcal/mol (27548.0343 without restraints) Performing minimization step: 493. Total energy = 27506.9225 kcal/mol (27487.8080 without restraints) Performing minimization step: 494. Total energy = 27446.9787 kcal/mol (27427.9012 without restraints) Performing minimization step: 495. Total energy = 27387.3517 kcal/mol (27368.3106 without restraints) Performing minimization step: 496. Total energy = 27328.0386 kcal/mol (27309.0336 without restraints) Performing minimization step: 497. Total energy = 27269.0364 kcal/mol (27250.0673 without restraints) Performing minimization step: 498. Total energy = 27210.3424 kcal/mol (27191.4089 without restraints) Performing minimization step: 499. Total energy = 27151.9539 kcal/mol (27133.0555 without restraints) Performing minimization step: 500. Total energy = 27093.8680 kcal/mol (27075.0045 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 501. Total energy = 27036.0819 kcal/mol (27017.2531 without restraints) Performing minimization step: 502. Total energy = 26978.5933 kcal/mol (26959.7988 without restraints) Performing minimization step: 503. Total energy = 26921.3994 kcal/mol (26902.6390 without restraints) Performing minimization step: 504. Total energy = 26864.4978 kcal/mol (26845.7712 without restraints) Performing minimization step: 505. Total energy = 26807.8855 kcal/mol (26789.1922 without restraints) Performing minimization step: 506. Total energy = 26751.5598 kcal/mol (26732.8995 without restraints) Performing minimization step: 507. Total energy = 26695.5185 kcal/mol (26676.8913 without restraints) Performing minimization step: 508. Total energy = 26639.7591 kcal/mol (26621.1644 without restraints) Performing minimization step: 509. Total energy = 26584.2791 kcal/mol (26565.7167 without restraints) Performing minimization step: 510. Total energy = 26529.0757 kcal/mol (26510.5455 without restraints) Performing minimization step: 511. Total energy = 26474.1474 kcal/mol (26455.6490 without restraints) Performing minimization step: 512. Total energy = 26419.4912 kcal/mol (26401.0243 without restraints) Performing minimization step: 513. Total energy = 26365.1049 kcal/mol (26346.6693 without restraints) Performing minimization step: 514. Total energy = 26310.9863 kcal/mol (26292.5816 without restraints) Performing minimization step: 515. Total energy = 26257.1327 kcal/mol (26238.7588 without restraints) Performing minimization step: 516. Total energy = 26203.5419 kcal/mol (26185.1985 without restraints) Performing minimization step: 517. Total energy = 26150.2119 kcal/mol (26131.8987 without restraints) Performing minimization step: 518. Total energy = 26097.1402 kcal/mol (26078.8570 without restraints) Performing minimization step: 519. Total energy = 26044.3247 kcal/mol (26026.0713 without restraints) Performing minimization step: 520. Total energy = 25991.7633 kcal/mol (25973.5394 without restraints) Performing minimization step: 521. Total energy = 25939.4533 kcal/mol (25921.2582 without restraints) Performing minimization step: 522. Total energy = 25887.3927 kcal/mol (25869.2272 without restraints) Performing minimization step: 523. Total energy = 25835.5804 kcal/mol (25817.4436 without restraints) Performing minimization step: 524. Total energy = 25784.0140 kcal/mol (25765.9058 without restraints) Performing minimization step: 525. Total energy = 25732.6909 kcal/mol (25714.6111 without restraints) Performing minimization step: 526. Total energy = 25681.6091 kcal/mol (25663.5574 without restraints) Performing minimization step: 527. Total energy = 25630.7669 kcal/mol (25612.7432 without restraints) Performing minimization step: 528. Total energy = 25580.1623 kcal/mol (25562.1663 without restraints) Performing minimization step: 529. Total energy = 25529.7933 kcal/mol (25511.8248 without restraints) Performing minimization step: 530. Total energy = 25479.6577 kcal/mol (25461.7164 without restraints) Performing minimization step: 531. Total energy = 25429.7535 kcal/mol (25411.8393 without restraints) Performing minimization step: 532. Total energy = 25380.0792 kcal/mol (25362.1918 without restraints) Performing minimization step: 533. Total energy = 25330.6326 kcal/mol (25312.7719 without restraints) Performing minimization step: 534. Total energy = 25281.4119 kcal/mol (25263.5774 without restraints) Performing minimization step: 535. Total energy = 25232.4152 kcal/mol (25214.6072 without restraints) Performing minimization step: 536. Total energy = 25183.6412 kcal/mol (25165.8592 without restraints) Performing minimization step: 537. Total energy = 25135.0875 kcal/mol (25117.3313 without restraints) Performing minimization step: 538. Total energy = 25086.7523 kcal/mol (25069.0217 without restraints) Performing minimization step: 539. Total energy = 25038.6338 kcal/mol (25020.9288 without restraints) Performing minimization step: 540. Total energy = 24990.7310 kcal/mol (24973.0513 without restraints) Performing minimization step: 541. Total energy = 24943.0415 kcal/mol (24925.3868 without restraints) Performing minimization step: 542. Total energy = 24895.5637 kcal/mol (24877.9338 without restraints) Performing minimization step: 543. Total energy = 24848.2956 kcal/mol (24830.6904 without restraints) Performing minimization step: 544. Total energy = 24801.2361 kcal/mol (24783.6555 without restraints) Performing minimization step: 545. Total energy = 24754.3835 kcal/mol (24736.8273 without restraints) Performing minimization step: 546. Total energy = 24707.7359 kcal/mol (24690.2038 without restraints) Performing minimization step: 547. Total energy = 24661.2913 kcal/mol (24643.7832 without restraints) Performing minimization step: 548. Total energy = 24615.0489 kcal/mol (24597.5647 without restraints) Performing minimization step: 549. Total energy = 24569.0069 kcal/mol (24551.5462 without restraints) Performing minimization step: 550. Total energy = 24523.1632 kcal/mol (24505.7260 without restraints) Performing minimization step: 551. Total energy = 24477.5166 kcal/mol (24460.1027 without restraints) Performing minimization step: 552. Total energy = 24432.0661 kcal/mol (24414.6753 without restraints) Performing minimization step: 553. Total energy = 24386.8090 kcal/mol (24369.4412 without restraints) Performing minimization step: 554. Total energy = 24341.7444 kcal/mol (24324.3995 without restraints) Performing minimization step: 555. Total energy = 24296.8712 kcal/mol (24279.5489 without restraints) Performing minimization step: 556. Total energy = 24252.1873 kcal/mol (24234.8875 without restraints) Performing minimization step: 557. Total energy = 24207.6914 kcal/mol (24190.4139 without restraints) Performing minimization step: 558. Total energy = 24163.3822 kcal/mol (24146.1269 without restraints) Performing minimization step: 559. Total energy = 24119.2588 kcal/mol (24102.0255 without restraints) Performing minimization step: 560. Total energy = 24075.3188 kcal/mol (24058.1073 without restraints) Performing minimization step: 561. Total energy = 24031.5608 kcal/mol (24014.3711 without restraints) Performing minimization step: 562. Total energy = 23987.9839 kcal/mol (23970.8158 without restraints) Performing minimization step: 563. Total energy = 23944.5864 kcal/mol (23927.4397 without restraints) Performing minimization step: 564. Total energy = 23901.3676 kcal/mol (23884.2421 without restraints) Performing minimization step: 565. Total energy = 23858.3253 kcal/mol (23841.2211 without restraints) Performing minimization step: 566. Total energy = 23815.4592 kcal/mol (23798.3759 without restraints) Performing minimization step: 567. Total energy = 23772.7666 kcal/mol (23755.7043 without restraints) Performing minimization step: 568. Total energy = 23730.2475 kcal/mol (23713.2058 without restraints) Performing minimization step: 569. Total energy = 23687.8994 kcal/mol (23670.8783 without restraints) Performing minimization step: 570. Total energy = 23645.7219 kcal/mol (23628.7212 without restraints) Performing minimization step: 571. Total energy = 23603.7133 kcal/mol (23586.7330 without restraints) Performing minimization step: 572. Total energy = 23561.8726 kcal/mol (23544.9124 without restraints) Performing minimization step: 573. Total energy = 23520.1984 kcal/mol (23503.2583 without restraints) Performing minimization step: 574. Total energy = 23478.6897 kcal/mol (23461.7694 without restraints) Performing minimization step: 575. Total energy = 23437.3450 kcal/mol (23420.4445 without restraints) Performing minimization step: 576. Total energy = 23396.1631 kcal/mol (23379.2824 without restraints) Performing minimization step: 577. Total energy = 23355.1430 kcal/mol (23338.2817 without restraints) Performing minimization step: 578. Total energy = 23314.2832 kcal/mol (23297.4413 without restraints) Performing minimization step: 579. Total energy = 23273.5827 kcal/mol (23256.7601 without restraints) Performing minimization step: 580. Total energy = 23233.0411 kcal/mol (23216.2377 without restraints) Performing minimization step: 581. Total energy = 23192.6560 kcal/mol (23175.8717 without restraints) Performing minimization step: 582. Total energy = 23152.4268 kcal/mol (23135.6614 without restraints) Performing minimization step: 583. Total energy = 23112.3524 kcal/mol (23095.6058 without restraints) Performing minimization step: 584. Total energy = 23072.4317 kcal/mol (23055.7037 without restraints) Performing minimization step: 585. Total energy = 23032.6636 kcal/mol (23015.9542 without restraints) Performing minimization step: 586. Total energy = 22993.0468 kcal/mol (22976.3559 without restraints) Performing minimization step: 587. Total energy = 22953.5807 kcal/mol (22936.9081 without restraints) Performing minimization step: 588. Total energy = 22914.2637 kcal/mol (22897.6093 without restraints) Performing minimization step: 589. Total energy = 22875.0951 kcal/mol (22858.4589 without restraints) Performing minimization step: 590. Total energy = 22836.0737 kcal/mol (22819.4558 without restraints) Performing minimization step: 591. Total energy = 22797.1991 kcal/mol (22780.5987 without restraints) Performing minimization step: 592. Total energy = 22758.4688 kcal/mol (22741.8863 without restraints) Performing minimization step: 593. Total energy = 22719.8820 kcal/mol (22703.3169 without restraints) Performing minimization step: 594. Total energy = 22681.4381 kcal/mol (22664.8907 without restraints) Performing minimization step: 595. Total energy = 22643.1366 kcal/mol (22626.6068 without restraints) Performing minimization step: 596. Total energy = 22604.9764 kcal/mol (22588.4640 without restraints) Performing minimization step: 597. Total energy = 22566.9561 kcal/mol (22550.4609 without restraints) Performing minimization step: 598. Total energy = 22529.0750 kcal/mol (22512.5971 without restraints) Performing minimization step: 599. Total energy = 22491.3320 kcal/mol (22474.8710 without restraints) Performing minimization step: 600. Total energy = 22453.7258 kcal/mol (22437.2819 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 601. Total energy = 22416.2558 kcal/mol (22399.8288 without restraints) Performing minimization step: 602. Total energy = 22378.9211 kcal/mol (22362.5107 without restraints) Performing minimization step: 603. Total energy = 22341.7207 kcal/mol (22325.3270 without restraints) Performing minimization step: 604. Total energy = 22304.6536 kcal/mol (22288.2765 without restraints) Performing minimization step: 605. Total energy = 22267.7191 kcal/mol (22251.3585 without restraints) Performing minimization step: 606. Total energy = 22230.9162 kcal/mol (22214.5720 without restraints) Performing minimization step: 607. Total energy = 22194.2440 kcal/mol (22177.9161 without restraints) Performing minimization step: 608. Total energy = 22157.7018 kcal/mol (22141.3901 without restraints) Performing minimization step: 609. Total energy = 22121.2883 kcal/mol (22104.9927 without restraints) Performing minimization step: 610. Total energy = 22085.0030 kcal/mol (22068.7235 without restraints) Performing minimization step: 611. Total energy = 22048.8445 kcal/mol (22032.5810 without restraints) Performing minimization step: 612. Total energy = 22012.8125 kcal/mol (21996.5648 without restraints) Performing minimization step: 613. Total energy = 21976.9056 kcal/mol (21960.6735 without restraints) Performing minimization step: 614. Total energy = 21941.1237 kcal/mol (21924.9075 without restraints) Performing minimization step: 615. Total energy = 21905.4659 kcal/mol (21889.2652 without restraints) Performing minimization step: 616. Total energy = 21869.9306 kcal/mol (21853.7455 without restraints) Performing minimization step: 617. Total energy = 21834.5176 kcal/mol (21818.3480 without restraints) Performing minimization step: 618. Total energy = 21799.2259 kcal/mol (21783.0715 without restraints) Performing minimization step: 619. Total energy = 21764.0548 kcal/mol (21747.9158 without restraints) Performing minimization step: 620. Total energy = 21729.0033 kcal/mol (21712.8794 without restraints) Performing minimization step: 621. Total energy = 21694.0708 kcal/mol (21677.9620 without restraints) Performing minimization step: 622. Total energy = 21659.2568 kcal/mol (21643.1630 without restraints) Performing minimization step: 623. Total energy = 21624.5599 kcal/mol (21608.4811 without restraints) Performing minimization step: 624. Total energy = 21589.9798 kcal/mol (21573.9160 without restraints) Performing minimization step: 625. Total energy = 21555.5153 kcal/mol (21539.4662 without restraints) Performing minimization step: 626. Total energy = 21521.1659 kcal/mol (21505.1316 without restraints) Performing minimization step: 627. Total energy = 21486.9311 kcal/mol (21470.9114 without restraints) Performing minimization step: 628. Total energy = 21452.8096 kcal/mol (21436.8044 without restraints) Performing minimization step: 629. Total energy = 21418.8011 kcal/mol (21402.8104 without restraints) Performing minimization step: 630. Total energy = 21384.9045 kcal/mol (21368.9283 without restraints) Performing minimization step: 631. Total energy = 21351.1193 kcal/mol (21335.1574 without restraints) Performing minimization step: 632. Total energy = 21317.4452 kcal/mol (21301.4977 without restraints) Performing minimization step: 633. Total energy = 21283.8808 kcal/mol (21267.9474 without restraints) Performing minimization step: 634. Total energy = 21250.4253 kcal/mol (21234.5060 without restraints) Performing minimization step: 635. Total energy = 21217.0785 kcal/mol (21201.1733 without restraints) Performing minimization step: 636. Total energy = 21183.8401 kcal/mol (21167.9489 without restraints) Performing minimization step: 637. Total energy = 21150.7087 kcal/mol (21134.8315 without restraints) Performing minimization step: 638. Total energy = 21117.6839 kcal/mol (21101.8206 without restraints) Performing minimization step: 639. Total energy = 21084.7650 kcal/mol (21068.9155 without restraints) Performing minimization step: 640. Total energy = 21051.9513 kcal/mol (21036.1155 without restraints) Performing minimization step: 641. Total energy = 21019.2418 kcal/mol (21003.4197 without restraints) Performing minimization step: 642. Total energy = 20986.6367 kcal/mol (20970.8283 without restraints) Performing minimization step: 643. Total energy = 20954.1346 kcal/mol (20938.3396 without restraints) Performing minimization step: 644. Total energy = 20921.7352 kcal/mol (20905.9538 without restraints) Performing minimization step: 645. Total energy = 20889.4381 kcal/mol (20873.6700 without restraints) Performing minimization step: 646. Total energy = 20857.2420 kcal/mol (20841.4873 without restraints) Performing minimization step: 647. Total energy = 20825.1467 kcal/mol (20809.4053 without restraints) Performing minimization step: 648. Total energy = 20793.1513 kcal/mol (20777.4231 without restraints) Performing minimization step: 649. Total energy = 20761.2557 kcal/mol (20745.5407 without restraints) Performing minimization step: 650. Total energy = 20729.4590 kcal/mol (20713.7572 without restraints) Performing minimization step: 651. Total energy = 20697.7605 kcal/mol (20682.0717 without restraints) Performing minimization step: 652. Total energy = 20666.1596 kcal/mol (20650.4838 without restraints) Performing minimization step: 653. Total energy = 20634.6558 kcal/mol (20618.9931 without restraints) Performing minimization step: 654. Total energy = 20603.2485 kcal/mol (20587.5986 without restraints) Performing minimization step: 655. Total energy = 20571.9369 kcal/mol (20556.2998 without restraints) Performing minimization step: 656. Total energy = 20540.7208 kcal/mol (20525.0964 without restraints) Performing minimization step: 657. Total energy = 20509.5994 kcal/mol (20493.9877 without restraints) Performing minimization step: 658. Total energy = 20478.5719 kcal/mol (20462.9729 without restraints) Performing minimization step: 659. Total energy = 20447.6384 kcal/mol (20432.0520 without restraints) Performing minimization step: 660. Total energy = 20416.7981 kcal/mol (20401.2243 without restraints) Performing minimization step: 661. Total energy = 20386.0505 kcal/mol (20370.4892 without restraints) Performing minimization step: 662. Total energy = 20355.3950 kcal/mol (20339.8461 without restraints) Performing minimization step: 663. Total energy = 20324.8306 kcal/mol (20309.2941 without restraints) Performing minimization step: 664. Total energy = 20294.3569 kcal/mol (20278.8327 without restraints) Performing minimization step: 665. Total energy = 20263.9736 kcal/mol (20248.4618 without restraints) Performing minimization step: 666. Total energy = 20233.6802 kcal/mol (20218.1808 without restraints) Performing minimization step: 667. Total energy = 20203.4758 kcal/mol (20187.9883 without restraints) Performing minimization step: 668. Total energy = 20173.3607 kcal/mol (20157.8855 without restraints) Performing minimization step: 669. Total energy = 20143.3337 kcal/mol (20127.8705 without restraints) Performing minimization step: 670. Total energy = 20113.3940 kcal/mol (20097.9427 without restraints) Performing minimization step: 671. Total energy = 20083.5416 kcal/mol (20068.1024 without restraints) Performing minimization step: 672. Total energy = 20053.7761 kcal/mol (20038.3488 without restraints) Performing minimization step: 673. Total energy = 20024.0967 kcal/mol (20008.6813 without restraints) Performing minimization step: 674. Total energy = 19994.5034 kcal/mol (19979.0998 without restraints) Performing minimization step: 675. Total energy = 19964.9952 kcal/mol (19949.6035 without restraints) Performing minimization step: 676. Total energy = 19935.5715 kcal/mol (19920.1915 without restraints) Performing minimization step: 677. Total energy = 19906.2319 kcal/mol (19890.8636 without restraints) Performing minimization step: 678. Total energy = 19876.9765 kcal/mol (19861.6199 without restraints) Performing minimization step: 679. Total energy = 19847.8042 kcal/mol (19832.4591 without restraints) Performing minimization step: 680. Total energy = 19818.7145 kcal/mol (19803.3811 without restraints) Performing minimization step: 681. Total energy = 19789.7075 kcal/mol (19774.3858 without restraints) Performing minimization step: 682. Total energy = 19760.7826 kcal/mol (19745.4722 without restraints) Performing minimization step: 683. Total energy = 19731.9390 kcal/mol (19716.6400 without restraints) Performing minimization step: 684. Total energy = 19703.1766 kcal/mol (19687.8890 without restraints) Performing minimization step: 685. Total energy = 19674.4943 kcal/mol (19659.2181 without restraints) Performing minimization step: 686. Total energy = 19645.8923 kcal/mol (19630.6274 without restraints) Performing minimization step: 687. Total energy = 19617.3697 kcal/mol (19602.1161 without restraints) Performing minimization step: 688. Total energy = 19588.9266 kcal/mol (19573.6842 without restraints) Performing minimization step: 689. Total energy = 19560.5620 kcal/mol (19545.3307 without restraints) Performing minimization step: 690. Total energy = 19532.2759 kcal/mol (19517.0559 without restraints) Performing minimization step: 691. Total energy = 19504.0677 kcal/mol (19488.8587 without restraints) Performing minimization step: 692. Total energy = 19475.9370 kcal/mol (19460.7390 without restraints) Performing minimization step: 693. Total energy = 19447.8834 kcal/mol (19432.6966 without restraints) Performing minimization step: 694. Total energy = 19419.9065 kcal/mol (19404.7307 without restraints) Performing minimization step: 695. Total energy = 19392.0061 kcal/mol (19376.8412 without restraints) Performing minimization step: 696. Total energy = 19364.1811 kcal/mol (19349.0271 without restraints) Performing minimization step: 697. Total energy = 19336.4317 kcal/mol (19321.2886 without restraints) Performing minimization step: 698. Total energy = 19308.7573 kcal/mol (19293.6251 without restraints) Performing minimization step: 699. Total energy = 19281.1571 kcal/mol (19266.0356 without restraints) Performing minimization step: 700. Total energy = 19253.6317 kcal/mol (19238.5208 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 701. Total energy = 19226.1801 kcal/mol (19211.0801 without restraints) Performing minimization step: 702. Total energy = 19198.8016 kcal/mol (19183.7123 without restraints) Performing minimization step: 703. Total energy = 19171.4965 kcal/mol (19156.4180 without restraints) Performing minimization step: 704. Total energy = 19144.2641 kcal/mol (19129.1961 without restraints) Performing minimization step: 705. Total energy = 19117.1037 kcal/mol (19102.0464 without restraints) Performing minimization step: 706. Total energy = 19090.0153 kcal/mol (19074.9685 without restraints) Performing minimization step: 707. Total energy = 19062.9986 kcal/mol (19047.9623 without restraints) Performing minimization step: 708. Total energy = 19036.0529 kcal/mol (19021.0271 without restraints) Performing minimization step: 709. Total energy = 19009.1779 kcal/mol (18994.1625 without restraints) Performing minimization step: 710. Total energy = 18982.3731 kcal/mol (18967.3681 without restraints) Performing minimization step: 711. Total energy = 18955.6385 kcal/mol (18940.6439 without restraints) Performing minimization step: 712. Total energy = 18928.9737 kcal/mol (18913.9894 without restraints) Performing minimization step: 713. Total energy = 18902.3781 kcal/mol (18887.4042 without restraints) Performing minimization step: 714. Total energy = 18875.8518 kcal/mol (18860.8883 without restraints) Performing minimization step: 715. Total energy = 18849.3941 kcal/mol (18834.4406 without restraints) Performing minimization step: 716. Total energy = 18823.0039 kcal/mol (18808.0607 without restraints) Performing minimization step: 717. Total energy = 18796.6822 kcal/mol (18781.7494 without restraints) Performing minimization step: 718. Total energy = 18770.4281 kcal/mol (18755.5052 without restraints) Performing minimization step: 719. Total energy = 18744.2411 kcal/mol (18729.3284 without restraints) Performing minimization step: 720. Total energy = 18718.1211 kcal/mol (18703.2185 without restraints) Performing minimization step: 721. Total energy = 18692.0677 kcal/mol (18677.1752 without restraints) Performing minimization step: 722. Total energy = 18666.0805 kcal/mol (18651.1981 without restraints) Performing minimization step: 723. Total energy = 18640.1594 kcal/mol (18625.2871 without restraints) Performing minimization step: 724. Total energy = 18614.3037 kcal/mol (18599.4411 without restraints) Performing minimization step: 725. Total energy = 18588.5130 kcal/mol (18573.6604 without restraints) Performing minimization step: 726. Total energy = 18562.7877 kcal/mol (18547.9450 without restraints) Performing minimization step: 727. Total energy = 18537.1266 kcal/mol (18522.2939 without restraints) Performing minimization step: 728. Total energy = 18511.5297 kcal/mol (18496.7068 without restraints) Performing minimization step: 729. Total energy = 18485.9967 kcal/mol (18471.1838 without restraints) Performing minimization step: 730. Total energy = 18460.5281 kcal/mol (18445.7250 without restraints) Performing minimization step: 731. Total energy = 18435.1225 kcal/mol (18420.3290 without restraints) Performing minimization step: 732. Total energy = 18409.7800 kcal/mol (18394.9963 without restraints) Performing minimization step: 733. Total energy = 18384.4999 kcal/mol (18369.7259 without restraints) Performing minimization step: 734. Total energy = 18359.2823 kcal/mol (18344.5180 without restraints) Performing minimization step: 735. Total energy = 18334.1272 kcal/mol (18319.3726 without restraints) Performing minimization step: 736. Total energy = 18309.0338 kcal/mol (18294.2888 without restraints) Performing minimization step: 737. Total energy = 18284.0023 kcal/mol (18269.2669 without restraints) Performing minimization step: 738. Total energy = 18259.0308 kcal/mol (18244.3051 without restraints) Performing minimization step: 739. Total energy = 18234.1214 kcal/mol (18219.4052 without restraints) Performing minimization step: 740. Total energy = 18209.2724 kcal/mol (18194.5657 without restraints) Performing minimization step: 741. Total energy = 18184.4837 kcal/mol (18169.7867 without restraints) Performing minimization step: 742. Total energy = 18159.7553 kcal/mol (18145.0676 without restraints) Performing minimization step: 743. Total energy = 18135.0870 kcal/mol (18120.4090 without restraints) Performing minimization step: 744. Total energy = 18110.4778 kcal/mol (18095.8092 without restraints) Performing minimization step: 745. Total energy = 18085.9280 kcal/mol (18071.2687 without restraints) Performing minimization step: 746. Total energy = 18061.4369 kcal/mol (18046.7870 without restraints) Performing minimization step: 747. Total energy = 18037.0047 kcal/mol (18022.3642 without restraints) Performing minimization step: 748. Total energy = 18012.6312 kcal/mol (17998.0000 without restraints) Performing minimization step: 749. Total energy = 17988.3156 kcal/mol (17973.6937 without restraints) Performing minimization step: 750. Total energy = 17964.0582 kcal/mol (17949.4456 without restraints) Performing minimization step: 751. Total energy = 17939.8581 kcal/mol (17925.2547 without restraints) Performing minimization step: 752. Total energy = 17915.7148 kcal/mol (17901.1207 without restraints) Performing minimization step: 753. Total energy = 17891.6296 kcal/mol (17877.0447 without restraints) Performing minimization step: 754. Total energy = 17867.6009 kcal/mol (17853.0253 without restraints) Performing minimization step: 755. Total energy = 17843.6290 kcal/mol (17829.0625 without restraints) Performing minimization step: 756. Total energy = 17819.7134 kcal/mol (17805.1561 without restraints) Performing minimization step: 757. Total energy = 17795.8535 kcal/mol (17781.3054 without restraints) Performing minimization step: 758. Total energy = 17772.0498 kcal/mol (17757.5108 without restraints) Performing minimization step: 759. Total energy = 17748.3016 kcal/mol (17733.7718 without restraints) Performing minimization step: 760. Total energy = 17724.6090 kcal/mol (17710.0882 without restraints) Performing minimization step: 761. Total energy = 17700.9717 kcal/mol (17686.4599 without restraints) Performing minimization step: 762. Total energy = 17677.3890 kcal/mol (17662.8863 without restraints) Performing minimization step: 763. Total energy = 17653.8609 kcal/mol (17639.3672 without restraints) Performing minimization step: 764. Total energy = 17630.3868 kcal/mol (17615.9020 without restraints) Performing minimization step: 765. Total energy = 17606.9677 kcal/mol (17592.4920 without restraints) Performing minimization step: 766. Total energy = 17583.6021 kcal/mol (17569.1353 without restraints) Performing minimization step: 767. Total energy = 17560.2901 kcal/mol (17545.8321 without restraints) Performing minimization step: 768. Total energy = 17537.0316 kcal/mol (17522.5827 without restraints) Performing minimization step: 769. Total energy = 17513.8261 kcal/mol (17499.3861 without restraints) Performing minimization step: 770. Total energy = 17490.6737 kcal/mol (17476.2426 without restraints) Performing minimization step: 771. Total energy = 17467.5743 kcal/mol (17453.1520 without restraints) Performing minimization step: 772. Total energy = 17444.5276 kcal/mol (17430.1141 without restraints) Performing minimization step: 773. Total energy = 17421.5329 kcal/mol (17407.1283 without restraints) Performing minimization step: 774. Total energy = 17398.5904 kcal/mol (17384.1945 without restraints) Performing minimization step: 775. Total energy = 17375.6999 kcal/mol (17361.3129 without restraints) Performing minimization step: 776. Total energy = 17352.8611 kcal/mol (17338.4827 without restraints) Performing minimization step: 777. Total energy = 17330.0736 kcal/mol (17315.7039 without restraints) Performing minimization step: 778. Total energy = 17307.3373 kcal/mol (17292.9764 without restraints) Performing minimization step: 779. Total energy = 17284.6524 kcal/mol (17270.3002 without restraints) Performing minimization step: 780. Total energy = 17262.0182 kcal/mol (17247.6747 without restraints) Performing minimization step: 781. Total energy = 17239.4344 kcal/mol (17225.0996 without restraints) Performing minimization step: 782. Total energy = 17216.9008 kcal/mol (17202.5744 without restraints) Performing minimization step: 783. Total energy = 17194.4172 kcal/mol (17180.0997 without restraints) Performing minimization step: 784. Total energy = 17171.9843 kcal/mol (17157.6754 without restraints) Performing minimization step: 785. Total energy = 17149.6014 kcal/mol (17135.3012 without restraints) Performing minimization step: 786. Total energy = 17127.2678 kcal/mol (17112.9762 without restraints) Performing minimization step: 787. Total energy = 17104.9834 kcal/mol (17090.7000 without restraints) Performing minimization step: 788. Total energy = 17082.7481 kcal/mol (17068.4737 without restraints) Performing minimization step: 789. Total energy = 17060.5620 kcal/mol (17046.2959 without restraints) Performing minimization step: 790. Total energy = 17038.4245 kcal/mol (17024.1670 without restraints) Performing minimization step: 791. Total energy = 17016.3358 kcal/mol (17002.0868 without restraints) Performing minimization step: 792. Total energy = 16994.2950 kcal/mol (16980.0546 without restraints) Performing minimization step: 793. Total energy = 16972.3029 kcal/mol (16958.0709 without restraints) Performing minimization step: 794. Total energy = 16950.3588 kcal/mol (16936.1352 without restraints) Performing minimization step: 795. Total energy = 16928.4625 kcal/mol (16914.2474 without restraints) Performing minimization step: 796. Total energy = 16906.6139 kcal/mol (16892.4071 without restraints) Performing minimization step: 797. Total energy = 16884.8126 kcal/mol (16870.6143 without restraints) Performing minimization step: 798. Total energy = 16863.0587 kcal/mol (16848.8687 without restraints) Performing minimization step: 799. Total energy = 16841.3519 kcal/mol (16827.1703 without restraints) Performing minimization step: 800. Total energy = 16819.6920 kcal/mol (16805.5187 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 801. Total energy = 16798.0787 kcal/mol (16783.9138 without restraints) Performing minimization step: 802. Total energy = 16776.5116 kcal/mol (16762.3550 without restraints) Performing minimization step: 803. Total energy = 16754.9910 kcal/mol (16740.8427 without restraints) Performing minimization step: 804. Total energy = 16733.5167 kcal/mol (16719.3767 without restraints) Performing minimization step: 805. Total energy = 16712.0888 kcal/mol (16697.9571 without restraints) Performing minimization step: 806. Total energy = 16690.7065 kcal/mol (16676.5830 without restraints) Performing minimization step: 807. Total energy = 16669.3697 kcal/mol (16655.2545 without restraints) Performing minimization step: 808. Total energy = 16648.0785 kcal/mol (16633.9715 without restraints) Performing minimization step: 809. Total energy = 16626.8326 kcal/mol (16612.7339 without restraints) Performing minimization step: 810. Total energy = 16605.6317 kcal/mol (16591.5412 without restraints) Performing minimization step: 811. Total energy = 16584.4764 kcal/mol (16570.3941 without restraints) Performing minimization step: 812. Total energy = 16563.3655 kcal/mol (16549.2914 without restraints) Performing minimization step: 813. Total energy = 16542.2992 kcal/mol (16528.2333 without restraints) Performing minimization step: 814. Total energy = 16521.2775 kcal/mol (16507.2197 without restraints) Performing minimization step: 815. Total energy = 16500.3001 kcal/mol (16486.2504 without restraints) Performing minimization step: 816. Total energy = 16479.3667 kcal/mol (16465.3252 without restraints) Performing minimization step: 817. Total energy = 16458.4775 kcal/mol (16444.4441 without restraints) Performing minimization step: 818. Total energy = 16437.6320 kcal/mol (16423.6068 without restraints) Performing minimization step: 819. Total energy = 16416.8307 kcal/mol (16402.8135 without restraints) Performing minimization step: 820. Total energy = 16396.0725 kcal/mol (16382.0634 without restraints) Performing minimization step: 821. Total energy = 16375.3582 kcal/mol (16361.3571 without restraints) Performing minimization step: 822. Total energy = 16354.6866 kcal/mol (16340.6937 without restraints) Performing minimization step: 823. Total energy = 16334.0583 kcal/mol (16320.0734 without restraints) Performing minimization step: 824. Total energy = 16313.4725 kcal/mol (16299.4956 without restraints) Performing minimization step: 825. Total energy = 16292.9296 kcal/mol (16278.9607 without restraints) Performing minimization step: 826. Total energy = 16272.4296 kcal/mol (16258.4687 without restraints) Performing minimization step: 827. Total energy = 16251.9718 kcal/mol (16238.0189 without restraints) Performing minimization step: 828. Total energy = 16231.5563 kcal/mol (16217.6112 without restraints) Performing minimization step: 829. Total energy = 16211.1832 kcal/mol (16197.2462 without restraints) Performing minimization step: 830. Total energy = 16190.8519 kcal/mol (16176.9229 without restraints) Performing minimization step: 831. Total energy = 16170.5626 kcal/mol (16156.6415 without restraints) Performing minimization step: 832. Total energy = 16150.3150 kcal/mol (16136.4018 without restraints) Performing minimization step: 833. Total energy = 16130.1087 kcal/mol (16116.2034 without restraints) Performing minimization step: 834. Total energy = 16109.9437 kcal/mol (16096.0463 without restraints) Performing minimization step: 835. Total energy = 16089.8201 kcal/mol (16075.9307 without restraints) Performing minimization step: 836. Total energy = 16069.7379 kcal/mol (16055.8564 without restraints) Performing minimization step: 837. Total energy = 16049.6967 kcal/mol (16035.8230 without restraints) Performing minimization step: 838. Total energy = 16029.6962 kcal/mol (16015.8305 without restraints) Performing minimization step: 839. Total energy = 16009.7370 kcal/mol (15995.8790 without restraints) Performing minimization step: 840. Total energy = 15989.8177 kcal/mol (15975.9676 without restraints) Performing minimization step: 841. Total energy = 15969.9395 kcal/mol (15956.0974 without restraints) Performing minimization step: 842. Total energy = 15950.1013 kcal/mol (15936.2668 without restraints) Performing minimization step: 843. Total energy = 15930.3034 kcal/mol (15916.4768 without restraints) Performing minimization step: 844. Total energy = 15910.5454 kcal/mol (15896.7265 without restraints) Performing minimization step: 845. Total energy = 15890.8276 kcal/mol (15877.0167 without restraints) Performing minimization step: 846. Total energy = 15871.1497 kcal/mol (15857.3464 without restraints) Performing minimization step: 847. Total energy = 15851.5114 kcal/mol (15837.7160 without restraints) Performing minimization step: 848. Total energy = 15831.9127 kcal/mol (15818.1249 without restraints) Performing minimization step: 849. Total energy = 15812.3533 kcal/mol (15798.5732 without restraints) Performing minimization step: 850. Total energy = 15792.8333 kcal/mol (15779.0610 without restraints) Performing minimization step: 851. Total energy = 15773.3519 kcal/mol (15759.5873 without restraints) Performing minimization step: 852. Total energy = 15753.9101 kcal/mol (15740.1532 without restraints) Performing minimization step: 853. Total energy = 15734.5070 kcal/mol (15720.7578 without restraints) Performing minimization step: 854. Total energy = 15715.1428 kcal/mol (15701.4013 without restraints) Performing minimization step: 855. Total energy = 15695.8168 kcal/mol (15682.0830 without restraints) Performing minimization step: 856. Total energy = 15676.5298 kcal/mol (15662.8037 without restraints) Performing minimization step: 857. Total energy = 15657.2813 kcal/mol (15643.5628 without restraints) Performing minimization step: 858. Total energy = 15638.0712 kcal/mol (15624.3604 without restraints) Performing minimization step: 859. Total energy = 15618.8992 kcal/mol (15605.1960 without restraints) Performing minimization step: 860. Total energy = 15599.7651 kcal/mol (15586.0696 without restraints) Performing minimization step: 861. Total energy = 15580.6693 kcal/mol (15566.9814 without restraints) Performing minimization step: 862. Total energy = 15561.6112 kcal/mol (15547.9308 without restraints) Performing minimization step: 863. Total energy = 15542.5903 kcal/mol (15528.9176 without restraints) Performing minimization step: 864. Total energy = 15523.6073 kcal/mol (15509.9422 without restraints) Performing minimization step: 865. Total energy = 15504.6623 kcal/mol (15491.0050 without restraints) Performing minimization step: 866. Total energy = 15485.7545 kcal/mol (15472.1045 without restraints) Performing minimization step: 867. Total energy = 15466.8837 kcal/mol (15453.2414 without restraints) Performing minimization step: 868. Total energy = 15448.0500 kcal/mol (15434.4152 without restraints) Performing minimization step: 869. Total energy = 15429.2532 kcal/mol (15415.6258 without restraints) Performing minimization step: 870. Total energy = 15410.4931 kcal/mol (15396.8730 without restraints) Performing minimization step: 871. Total energy = 15391.7691 kcal/mol (15378.1569 without restraints) Performing minimization step: 872. Total energy = 15373.0831 kcal/mol (15359.4786 without restraints) Performing minimization step: 873. Total energy = 15354.4337 kcal/mol (15340.8366 without restraints) Performing minimization step: 874. Total energy = 15335.8206 kcal/mol (15322.2309 without restraints) Performing minimization step: 875. Total energy = 15317.2442 kcal/mol (15303.6620 without restraints) Performing minimization step: 876. Total energy = 15298.7038 kcal/mol (15285.1292 without restraints) Performing minimization step: 877. Total energy = 15280.1995 kcal/mol (15266.6323 without restraints) Performing minimization step: 878. Total energy = 15261.7309 kcal/mol (15248.1710 without restraints) Performing minimization step: 879. Total energy = 15243.2983 kcal/mol (15229.7460 without restraints) Performing minimization step: 880. Total energy = 15224.9017 kcal/mol (15211.3569 without restraints) Performing minimization step: 881. Total energy = 15206.5408 kcal/mol (15193.0035 without restraints) Performing minimization step: 882. Total energy = 15188.2156 kcal/mol (15174.6856 without restraints) Performing minimization step: 883. Total energy = 15169.9256 kcal/mol (15156.4029 without restraints) Performing minimization step: 884. Total energy = 15151.6712 kcal/mol (15138.1560 without restraints) Performing minimization step: 885. Total energy = 15133.4526 kcal/mol (15119.9448 without restraints) Performing minimization step: 886. Total energy = 15115.2684 kcal/mol (15101.7681 without restraints) Performing minimization step: 887. Total energy = 15097.1201 kcal/mol (15083.6272 without restraints) Performing minimization step: 888. Total energy = 15079.0067 kcal/mol (15065.5212 without restraints) Performing minimization step: 889. Total energy = 15060.9283 kcal/mol (15047.4501 without restraints) Performing minimization step: 890. Total energy = 15042.8846 kcal/mol (15029.4138 without restraints) Performing minimization step: 891. Total energy = 15024.8753 kcal/mol (15011.4119 without restraints) Performing minimization step: 892. Total energy = 15006.9010 kcal/mol (14993.4450 without restraints) Performing minimization step: 893. Total energy = 14988.9611 kcal/mol (14975.5124 without restraints) Performing minimization step: 894. Total energy = 14971.0553 kcal/mol (14957.6139 without restraints) Performing minimization step: 895. Total energy = 14953.1841 kcal/mol (14939.7500 without restraints) Performing minimization step: 896. Total energy = 14935.3467 kcal/mol (14921.9201 without restraints) Performing minimization step: 897. Total energy = 14917.5441 kcal/mol (14904.1247 without restraints) Performing minimization step: 898. Total energy = 14899.7757 kcal/mol (14886.3636 without restraints) Performing minimization step: 899. Total energy = 14882.0409 kcal/mol (14868.6361 without restraints) Performing minimization step: 900. Total energy = 14864.3402 kcal/mol (14850.9427 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 901. Total energy = 14846.6733 kcal/mol (14833.2830 without restraints) Performing minimization step: 902. Total energy = 14829.0400 kcal/mol (14815.6569 without restraints) Performing minimization step: 903. Total energy = 14811.4403 kcal/mol (14798.0646 without restraints) Performing minimization step: 904. Total energy = 14793.8743 kcal/mol (14780.5058 without restraints) Performing minimization step: 905. Total energy = 14776.3414 kcal/mol (14762.9802 without restraints) Performing minimization step: 906. Total energy = 14758.8418 kcal/mol (14745.4879 without restraints) Performing minimization step: 907. Total energy = 14741.3759 kcal/mol (14728.0292 without restraints) Performing minimization step: 908. Total energy = 14723.9427 kcal/mol (14710.6032 without restraints) Performing minimization step: 909. Total energy = 14706.5429 kcal/mol (14693.2106 without restraints) Performing minimization step: 910. Total energy = 14689.1748 kcal/mol (14675.8498 without restraints) Performing minimization step: 911. Total energy = 14671.8410 kcal/mol (14658.5233 without restraints) Performing minimization step: 912. Total energy = 14654.5397 kcal/mol (14641.2291 without restraints) Performing minimization step: 913. Total energy = 14637.2712 kcal/mol (14623.9678 without restraints) Performing minimization step: 914. Total energy = 14620.0354 kcal/mol (14606.7392 without restraints) Performing minimization step: 915. Total energy = 14602.8319 kcal/mol (14589.5429 without restraints) Performing minimization step: 916. Total energy = 14585.6611 kcal/mol (14572.3792 without restraints) Performing minimization step: 917. Total energy = 14568.5224 kcal/mol (14555.2477 without restraints) Performing minimization step: 918. Total energy = 14551.4161 kcal/mol (14538.1485 without restraints) Performing minimization step: 919. Total energy = 14534.3420 kcal/mol (14521.0816 without restraints) Performing minimization step: 920. Total energy = 14517.2995 kcal/mol (14504.0462 without restraints) Performing minimization step: 921. Total energy = 14500.2895 kcal/mol (14487.0434 without restraints) Performing minimization step: 922. Total energy = 14483.3115 kcal/mol (14470.0726 without restraints) Performing minimization step: 923. Total energy = 14466.3653 kcal/mol (14453.1334 without restraints) Performing minimization step: 924. Total energy = 14449.4512 kcal/mol (14436.2265 without restraints) Performing minimization step: 925. Total energy = 14432.5686 kcal/mol (14419.3510 without restraints) Performing minimization step: 926. Total energy = 14415.7181 kcal/mol (14402.5076 without restraints) Performing minimization step: 927. Total energy = 14398.8990 kcal/mol (14385.6956 without restraints) Performing minimization step: 928. Total energy = 14382.1116 kcal/mol (14368.9152 without restraints) Performing minimization step: 929. Total energy = 14365.3552 kcal/mol (14352.1661 without restraints) Performing minimization step: 930. Total energy = 14348.6302 kcal/mol (14335.4481 without restraints) Performing minimization step: 931. Total energy = 14331.9366 kcal/mol (14318.7615 without restraints) Performing minimization step: 932. Total energy = 14315.2739 kcal/mol (14302.1059 without restraints) Performing minimization step: 933. Total energy = 14298.6424 kcal/mol (14285.4814 without restraints) Performing minimization step: 934. Total energy = 14282.0422 kcal/mol (14268.8883 without restraints) Performing minimization step: 935. Total energy = 14265.4727 kcal/mol (14252.3258 without restraints) Performing minimization step: 936. Total energy = 14248.9340 kcal/mol (14235.7942 without restraints) Performing minimization step: 937. Total energy = 14232.4261 kcal/mol (14219.2933 without restraints) Performing minimization step: 938. Total energy = 14215.9492 kcal/mol (14202.8234 without restraints) Performing minimization step: 939. Total energy = 14199.5026 kcal/mol (14186.3837 without restraints) Performing minimization step: 940. Total energy = 14183.0864 kcal/mol (14169.9747 without restraints) Performing minimization step: 941. Total energy = 14166.7011 kcal/mol (14153.5964 without restraints) Performing minimization step: 942. Total energy = 14150.3462 kcal/mol (14137.2484 without restraints) Performing minimization step: 943. Total energy = 14134.0214 kcal/mol (14120.9305 without restraints) Performing minimization step: 944. Total energy = 14117.7273 kcal/mol (14104.6436 without restraints) Performing minimization step: 945. Total energy = 14101.4633 kcal/mol (14088.3865 without restraints) Performing minimization step: 946. Total energy = 14085.2289 kcal/mol (14072.1591 without restraints) Performing minimization step: 947. Total energy = 14069.0253 kcal/mol (14055.9627 without restraints) Performing minimization step: 948. Total energy = 14052.8519 kcal/mol (14039.7960 without restraints) Performing minimization step: 949. Total energy = 14036.7077 kcal/mol (14023.6586 without restraints) Performing minimization step: 950. Total energy = 14020.5937 kcal/mol (14007.5520 without restraints) Performing minimization step: 951. Total energy = 14004.5096 kcal/mol (13991.4747 without restraints) Performing minimization step: 952. Total energy = 13988.4552 kcal/mol (13975.4272 without restraints) Performing minimization step: 953. Total energy = 13972.4305 kcal/mol (13959.4095 without restraints) Performing minimization step: 954. Total energy = 13956.4353 kcal/mol (13943.4211 without restraints) Performing minimization step: 955. Total energy = 13940.4696 kcal/mol (13927.4624 without restraints) Performing minimization step: 956. Total energy = 13924.5334 kcal/mol (13911.5330 without restraints) Performing minimization step: 957. Total energy = 13908.6255 kcal/mol (13895.6321 without restraints) Performing minimization step: 958. Total energy = 13892.7486 kcal/mol (13879.7621 without restraints) Performing minimization step: 959. Total energy = 13876.9009 kcal/mol (13863.9213 without restraints) Performing minimization step: 960. Total energy = 13861.0818 kcal/mol (13848.1090 without restraints) Performing minimization step: 961. Total energy = 13845.2919 kcal/mol (13832.3261 without restraints) Performing minimization step: 962. Total energy = 13829.5310 kcal/mol (13816.5721 without restraints) Performing minimization step: 963. Total energy = 13813.7986 kcal/mol (13800.8466 without restraints) Performing minimization step: 964. Total energy = 13798.0952 kcal/mol (13785.1501 without restraints) Performing minimization step: 965. Total energy = 13782.4211 kcal/mol (13769.4828 without restraints) Performing minimization step: 966. Total energy = 13766.7756 kcal/mol (13753.8442 without restraints) Performing minimization step: 967. Total energy = 13751.1598 kcal/mol (13738.2351 without restraints) Performing minimization step: 968. Total energy = 13735.5718 kcal/mol (13722.6540 without restraints) Performing minimization step: 969. Total energy = 13720.0122 kcal/mol (13707.1011 without restraints) Performing minimization step: 970. Total energy = 13704.4811 kcal/mol (13691.5770 without restraints) Performing minimization step: 971. Total energy = 13688.9784 kcal/mol (13676.0812 without restraints) Performing minimization step: 972. Total energy = 13673.5048 kcal/mol (13660.6143 without restraints) Performing minimization step: 973. Total energy = 13658.0584 kcal/mol (13645.1748 without restraints) Performing minimization step: 974. Total energy = 13642.6410 kcal/mol (13629.7641 without restraints) Performing minimization step: 975. Total energy = 13627.2520 kcal/mol (13614.3819 without restraints) Performing minimization step: 976. Total energy = 13611.8909 kcal/mol (13599.0277 without restraints) Performing minimization step: 977. Total energy = 13596.5579 kcal/mol (13583.7015 without restraints) Performing minimization step: 978. Total energy = 13581.2528 kcal/mol (13568.4031 without restraints) Performing minimization step: 979. Total energy = 13565.9758 kcal/mol (13553.1330 without restraints) Performing minimization step: 980. Total energy = 13550.7270 kcal/mol (13537.8910 without restraints) Performing minimization step: 981. Total energy = 13535.5058 kcal/mol (13522.6765 without restraints) Performing minimization step: 982. Total energy = 13520.3126 kcal/mol (13507.4901 without restraints) Performing minimization step: 983. Total energy = 13505.1471 kcal/mol (13492.3314 without restraints) Performing minimization step: 984. Total energy = 13490.0093 kcal/mol (13477.2003 without restraints) Performing minimization step: 985. Total energy = 13474.8987 kcal/mol (13462.0964 without restraints) Performing minimization step: 986. Total energy = 13459.8156 kcal/mol (13447.0200 without restraints) Performing minimization step: 987. Total energy = 13444.7600 kcal/mol (13431.9712 without restraints) Performing minimization step: 988. Total energy = 13429.7321 kcal/mol (13416.9501 without restraints) Performing minimization step: 989. Total energy = 13414.7316 kcal/mol (13401.9563 without restraints) Performing minimization step: 990. Total energy = 13399.7582 kcal/mol (13386.9896 without restraints) Performing minimization step: 991. Total energy = 13384.8128 kcal/mol (13372.0511 without restraints) Performing minimization step: 992. Total energy = 13369.8942 kcal/mol (13357.1391 without restraints) Performing minimization step: 993. Total energy = 13355.0028 kcal/mol (13342.2546 without restraints) Performing minimization step: 994. Total energy = 13340.1386 kcal/mol (13327.3968 without restraints) Performing minimization step: 995. Total energy = 13325.3014 kcal/mol (13312.5665 without restraints) Performing minimization step: 996. Total energy = 13310.4909 kcal/mol (13297.7625 without restraints) Performing minimization step: 997. Total energy = 13295.7073 kcal/mol (13282.9856 without restraints) Performing minimization step: 998. Total energy = 13280.9506 kcal/mol (13268.2357 without restraints) Performing minimization step: 999. Total energy = 13266.2208 kcal/mol (13253.5124 without restraints) Performing minimization step: 1000. Total energy = 13251.5174 kcal/mol (13238.8157 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 13236.8410 kcal/mol (13224.1460 without restraints) Performing minimization step: 1002. Total energy = 13222.1912 kcal/mol (13209.5028 without restraints) Performing minimization step: 1003. Total energy = 13207.5679 kcal/mol (13194.8862 without restraints) Performing minimization step: 1004. Total energy = 13192.9712 kcal/mol (13180.2961 without restraints) Performing minimization step: 1005. Total energy = 13178.4012 kcal/mol (13165.7328 without restraints) Performing minimization step: 1006. Total energy = 13163.8573 kcal/mol (13151.1956 without restraints) Performing minimization step: 1007. Total energy = 13149.3403 kcal/mol (13136.6852 without restraints) Performing minimization step: 1008. Total energy = 13134.8491 kcal/mol (13122.2006 without restraints) Performing minimization step: 1009. Total energy = 13120.3845 kcal/mol (13107.7425 without restraints) Performing minimization step: 1010. Total energy = 13105.9457 kcal/mol (13093.3105 without restraints) Performing minimization step: 1011. Total energy = 13091.5332 kcal/mol (13078.9045 without restraints) Performing minimization step: 1012. Total energy = 13077.1465 kcal/mol (13064.5244 without restraints) Performing minimization step: 1013. Total energy = 13062.7858 kcal/mol (13050.1703 without restraints) Performing minimization step: 1014. Total energy = 13048.4516 kcal/mol (13035.8430 without restraints) Performing minimization step: 1015. Total energy = 13034.1431 kcal/mol (13021.5408 without restraints) Performing minimization step: 1016. Total energy = 13019.8604 kcal/mol (13007.2647 without restraints) Performing minimization step: 1017. Total energy = 13005.6037 kcal/mol (12993.0146 without restraints) Performing minimization step: 1018. Total energy = 12991.3726 kcal/mol (12978.7901 without restraints) Performing minimization step: 1019. Total energy = 12977.1670 kcal/mol (12964.5910 without restraints) Performing minimization step: 1020. Total energy = 12962.9874 kcal/mol (12950.4179 without restraints) Performing minimization step: 1021. Total energy = 12948.8341 kcal/mol (12936.2712 without restraints) Performing minimization step: 1022. Total energy = 12934.7059 kcal/mol (12922.1497 without restraints) Performing minimization step: 1023. Total energy = 12920.6033 kcal/mol (12908.0537 without restraints) Performing minimization step: 1024. Total energy = 12906.5259 kcal/mol (12893.9827 without restraints) Performing minimization step: 1025. Total energy = 12892.4742 kcal/mol (12879.9375 without restraints) Performing minimization step: 1026. Total energy = 12878.4471 kcal/mol (12865.9171 without restraints) Performing minimization step: 1027. Total energy = 12864.4460 kcal/mol (12851.9224 without restraints) Performing minimization step: 1028. Total energy = 12850.4699 kcal/mol (12837.9528 without restraints) Performing minimization step: 1029. Total energy = 12836.5194 kcal/mol (12824.0088 without restraints) Performing minimization step: 1030. Total energy = 12822.5934 kcal/mol (12810.0893 without restraints) Performing minimization step: 1031. Total energy = 12808.6929 kcal/mol (12796.1954 without restraints) Performing minimization step: 1032. Total energy = 12794.8173 kcal/mol (12782.3262 without restraints) Performing minimization step: 1033. Total energy = 12780.9669 kcal/mol (12768.4823 without restraints) Performing minimization step: 1034. Total energy = 12767.1413 kcal/mol (12754.6633 without restraints) Performing minimization step: 1035. Total energy = 12753.3406 kcal/mol (12740.8688 without restraints) Performing minimization step: 1036. Total energy = 12739.5648 kcal/mol (12727.0996 without restraints) Performing minimization step: 1037. Total energy = 12725.8136 kcal/mol (12713.3549 without restraints) Performing minimization step: 1038. Total energy = 12712.0872 kcal/mol (12699.6351 without restraints) Performing minimization step: 1039. Total energy = 12698.3858 kcal/mol (12685.9401 without restraints) Performing minimization step: 1040. Total energy = 12684.7094 kcal/mol (12672.2701 without restraints) Performing minimization step: 1041. Total energy = 12671.0570 kcal/mol (12658.6242 without restraints) Performing minimization step: 1042. Total energy = 12657.4292 kcal/mol (12645.0028 without restraints) Performing minimization step: 1043. Total energy = 12643.8263 kcal/mol (12631.4063 without restraints) Performing minimization step: 1044. Total energy = 12630.2477 kcal/mol (12617.8342 without restraints) Performing minimization step: 1045. Total energy = 12616.6934 kcal/mol (12604.2863 without restraints) Performing minimization step: 1046. Total energy = 12603.1633 kcal/mol (12590.7627 without restraints) Performing minimization step: 1047. Total energy = 12589.6578 kcal/mol (12577.2636 without restraints) Performing minimization step: 1048. Total energy = 12576.1764 kcal/mol (12563.7885 without restraints) Performing minimization step: 1049. Total energy = 12562.7192 kcal/mol (12550.3380 without restraints) Performing minimization step: 1050. Total energy = 12549.2864 kcal/mol (12536.9114 without restraints) Performing minimization step: 1051. Total energy = 12535.8777 kcal/mol (12523.5091 without restraints) Performing minimization step: 1052. Total energy = 12522.4931 kcal/mol (12510.1309 without restraints) Performing minimization step: 1053. Total energy = 12509.1321 kcal/mol (12496.7763 without restraints) Performing minimization step: 1054. Total energy = 12495.7953 kcal/mol (12483.4459 without restraints) Performing minimization step: 1055. Total energy = 12482.4825 kcal/mol (12470.1394 without restraints) Performing minimization step: 1056. Total energy = 12469.1937 kcal/mol (12456.8570 without restraints) Performing minimization step: 1057. Total energy = 12455.9288 kcal/mol (12443.5984 without restraints) Performing minimization step: 1058. Total energy = 12442.6875 kcal/mol (12430.3636 without restraints) Performing minimization step: 1059. Total energy = 12429.4702 kcal/mol (12417.1526 without restraints) Performing minimization step: 1060. Total energy = 12416.2765 kcal/mol (12403.9651 without restraints) Performing minimization step: 1061. Total energy = 12403.1062 kcal/mol (12390.8013 without restraints) Performing minimization step: 1062. Total energy = 12389.9598 kcal/mol (12377.6612 without restraints) Performing minimization step: 1063. Total energy = 12376.8367 kcal/mol (12364.5445 without restraints) Performing minimization step: 1064. Total energy = 12363.7375 kcal/mol (12351.4517 without restraints) Performing minimization step: 1065. Total energy = 12350.6620 kcal/mol (12338.3826 without restraints) Performing minimization step: 1066. Total energy = 12337.6099 kcal/mol (12325.3367 without restraints) Performing minimization step: 1067. Total energy = 12324.5803 kcal/mol (12312.3134 without restraints) Performing minimization step: 1068. Total energy = 12311.5751 kcal/mol (12299.3145 without restraints) Performing minimization step: 1069. Total energy = 12298.5925 kcal/mol (12286.3382 without restraints) Performing minimization step: 1070. Total energy = 12285.6331 kcal/mol (12273.3850 without restraints) Performing minimization step: 1071. Total energy = 12272.6969 kcal/mol (12260.4552 without restraints) Performing minimization step: 1072. Total energy = 12259.7840 kcal/mol (12247.5486 without restraints) Performing minimization step: 1073. Total energy = 12246.8944 kcal/mol (12234.6653 without restraints) Performing minimization step: 1074. Total energy = 12234.0277 kcal/mol (12221.8049 without restraints) Performing minimization step: 1075. Total energy = 12221.1840 kcal/mol (12208.9675 without restraints) Performing minimization step: 1076. Total energy = 12208.3632 kcal/mol (12196.1529 without restraints) Performing minimization step: 1077. Total energy = 12195.5661 kcal/mol (12183.3623 without restraints) Performing minimization step: 1078. Total energy = 12182.7917 kcal/mol (12170.5940 without restraints) Performing minimization step: 1079. Total energy = 12170.0397 kcal/mol (12157.8482 without restraints) Performing minimization step: 1080. Total energy = 12157.3104 kcal/mol (12145.1251 without restraints) Performing minimization step: 1081. Total energy = 12144.6038 kcal/mol (12132.4248 without restraints) Performing minimization step: 1082. Total energy = 12131.9199 kcal/mol (12119.7471 without restraints) Performing minimization step: 1083. Total energy = 12119.2587 kcal/mol (12107.0920 without restraints) Performing minimization step: 1084. Total energy = 12106.6201 kcal/mol (12094.4598 without restraints) Performing minimization step: 1085. Total energy = 12094.0042 kcal/mol (12081.8501 without restraints) Performing minimization step: 1086. Total energy = 12081.4109 kcal/mol (12069.2632 without restraints) Performing minimization step: 1087. Total energy = 12068.8402 kcal/mol (12056.6986 without restraints) Performing minimization step: 1088. Total energy = 12056.2918 kcal/mol (12044.1564 without restraints) Performing minimization step: 1089. Total energy = 12043.7658 kcal/mol (12031.6366 without restraints) Performing minimization step: 1090. Total energy = 12031.2625 kcal/mol (12019.1394 without restraints) Performing minimization step: 1091. Total energy = 12018.7812 kcal/mol (12006.6643 without restraints) Performing minimization step: 1092. Total energy = 12006.3225 kcal/mol (11994.2118 without restraints) Performing minimization step: 1093. Total energy = 11993.8857 kcal/mol (11981.7812 without restraints) Performing minimization step: 1094. Total energy = 11981.4711 kcal/mol (11969.3728 without restraints) Performing minimization step: 1095. Total energy = 11969.0786 kcal/mol (11956.9865 without restraints) Performing minimization step: 1096. Total energy = 11956.7081 kcal/mol (11944.6221 without restraints) Performing minimization step: 1097. Total energy = 11944.3598 kcal/mol (11932.2800 without restraints) Performing minimization step: 1098. Total energy = 11932.0335 kcal/mol (11919.9599 without restraints) Performing minimization step: 1099. Total energy = 11919.7288 kcal/mol (11907.6613 without restraints) Performing minimization step: 1100. Total energy = 11907.4465 kcal/mol (11895.3851 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 11895.1860 kcal/mol (11883.1307 without restraints) Performing minimization step: 1102. Total energy = 11882.9473 kcal/mol (11870.8982 without restraints) Performing minimization step: 1103. Total energy = 11870.7307 kcal/mol (11858.6877 without restraints) Performing minimization step: 1104. Total energy = 11858.5355 kcal/mol (11846.4987 without restraints) Performing minimization step: 1105. Total energy = 11846.3624 kcal/mol (11834.3317 without restraints) Performing minimization step: 1106. Total energy = 11834.2107 kcal/mol (11822.1861 without restraints) Performing minimization step: 1107. Total energy = 11822.0808 kcal/mol (11810.0623 without restraints) Performing minimization step: 1108. Total energy = 11809.9726 kcal/mol (11797.9602 without restraints) Performing minimization step: 1109. Total energy = 11797.8858 kcal/mol (11785.8795 without restraints) Performing minimization step: 1110. Total energy = 11785.8205 kcal/mol (11773.8203 without restraints) Performing minimization step: 1111. Total energy = 11773.7767 kcal/mol (11761.7826 without restraints) Performing minimization step: 1112. Total energy = 11761.7541 kcal/mol (11749.7658 without restraints) Performing minimization step: 1113. Total energy = 11749.7534 kcal/mol (11737.7715 without restraints) Performing minimization step: 1114. Total energy = 11737.7738 kcal/mol (11725.7979 without restraints) Performing minimization step: 1115. Total energy = 11725.8153 kcal/mol (11713.8455 without restraints) Performing minimization step: 1116. Total energy = 11713.8784 kcal/mol (11701.9147 without restraints) Performing minimization step: 1117. Total energy = 11701.9626 kcal/mol (11690.0049 without restraints) Performing minimization step: 1118. Total energy = 11690.0685 kcal/mol (11678.1170 without restraints) Performing minimization step: 1119. Total energy = 11678.1951 kcal/mol (11666.2495 without restraints) Performing minimization step: 1120. Total energy = 11666.3427 kcal/mol (11654.4031 without restraints) Performing minimization step: 1121. Total energy = 11654.5112 kcal/mol (11642.5775 without restraints) Performing minimization step: 1122. Total energy = 11642.7007 kcal/mol (11630.7732 without restraints) Performing minimization step: 1123. Total energy = 11630.9114 kcal/mol (11618.9899 without restraints) Performing minimization step: 1124. Total energy = 11619.1430 kcal/mol (11607.2276 without restraints) Performing minimization step: 1125. Total energy = 11607.3955 kcal/mol (11595.4859 without restraints) Performing minimization step: 1126. Total energy = 11595.6681 kcal/mol (11583.7646 without restraints) Performing minimization step: 1127. Total energy = 11583.9623 kcal/mol (11572.0649 without restraints) Performing minimization step: 1128. Total energy = 11572.2773 kcal/mol (11560.3858 without restraints) Performing minimization step: 1129. Total energy = 11560.6127 kcal/mol (11548.7273 without restraints) Performing minimization step: 1130. Total energy = 11548.9691 kcal/mol (11537.0897 without restraints) Performing minimization step: 1131. Total energy = 11537.3462 kcal/mol (11525.4727 without restraints) Performing minimization step: 1132. Total energy = 11525.7440 kcal/mol (11513.8765 without restraints) Performing minimization step: 1133. Total energy = 11514.1628 kcal/mol (11502.3013 without restraints) Performing minimization step: 1134. Total energy = 11502.6016 kcal/mol (11490.7461 without restraints) Performing minimization step: 1135. Total energy = 11491.0609 kcal/mol (11479.2113 without restraints) Performing minimization step: 1136. Total energy = 11479.5408 kcal/mol (11467.6971 without restraints) Performing minimization step: 1137. Total energy = 11468.0409 kcal/mol (11456.2032 without restraints) Performing minimization step: 1138. Total energy = 11456.5616 kcal/mol (11444.7299 without restraints) Performing minimization step: 1139. Total energy = 11445.1027 kcal/mol (11433.2769 without restraints) Performing minimization step: 1140. Total energy = 11433.6636 kcal/mol (11421.8437 without restraints) Performing minimization step: 1141. Total energy = 11422.2449 kcal/mol (11410.4311 without restraints) Performing minimization step: 1142. Total energy = 11410.8465 kcal/mol (11399.0385 without restraints) Performing minimization step: 1143. Total energy = 11399.4681 kcal/mol (11387.6659 without restraints) Performing minimization step: 1144. Total energy = 11388.1099 kcal/mol (11376.3137 without restraints) Performing minimization step: 1145. Total energy = 11376.7719 kcal/mol (11364.9816 without restraints) Performing minimization step: 1146. Total energy = 11365.4537 kcal/mol (11353.6693 without restraints) Performing minimization step: 1147. Total energy = 11354.1559 kcal/mol (11342.3774 without restraints) Performing minimization step: 1148. Total energy = 11342.8781 kcal/mol (11331.1055 without restraints) Performing minimization step: 1149. Total energy = 11331.6198 kcal/mol (11319.8531 without restraints) Performing minimization step: 1150. Total energy = 11320.3820 kcal/mol (11308.6212 without restraints) Performing minimization step: 1151. Total energy = 11309.1640 kcal/mol (11297.4090 without restraints) Performing minimization step: 1152. Total energy = 11297.9656 kcal/mol (11286.2165 without restraints) Performing minimization step: 1153. Total energy = 11286.7869 kcal/mol (11275.0435 without restraints) Performing minimization step: 1154. Total energy = 11275.6278 kcal/mol (11263.8904 without restraints) Performing minimization step: 1155. Total energy = 11264.4882 kcal/mol (11252.7567 without restraints) Performing minimization step: 1156. Total energy = 11253.3686 kcal/mol (11241.6429 without restraints) Performing minimization step: 1157. Total energy = 11242.2689 kcal/mol (11230.5491 without restraints) Performing minimization step: 1158. Total energy = 11231.1886 kcal/mol (11219.4745 without restraints) Performing minimization step: 1159. Total energy = 11220.1278 kcal/mol (11208.4196 without restraints) Performing minimization step: 1160. Total energy = 11209.0862 kcal/mol (11197.3838 without restraints) Performing minimization step: 1161. Total energy = 11198.0643 kcal/mol (11186.3678 without restraints) Performing minimization step: 1162. Total energy = 11187.0620 kcal/mol (11175.3713 without restraints) Performing minimization step: 1163. Total energy = 11176.0791 kcal/mol (11164.3942 without restraints) Performing minimization step: 1164. Total energy = 11165.1155 kcal/mol (11153.4363 without restraints) Performing minimization step: 1165. Total energy = 11154.1713 kcal/mol (11142.4979 without restraints) Performing minimization step: 1166. Total energy = 11143.2461 kcal/mol (11131.5786 without restraints) Performing minimization step: 1167. Total energy = 11132.3403 kcal/mol (11120.6785 without restraints) Performing minimization step: 1168. Total energy = 11121.4533 kcal/mol (11109.7973 without restraints) Performing minimization step: 1169. Total energy = 11110.5861 kcal/mol (11098.9360 without restraints) Performing minimization step: 1170. Total energy = 11099.7376 kcal/mol (11088.0932 without restraints) Performing minimization step: 1171. Total energy = 11088.9081 kcal/mol (11077.2693 without restraints) Performing minimization step: 1172. Total energy = 11078.0979 kcal/mol (11066.4649 without restraints) Performing minimization step: 1173. Total energy = 11067.3065 kcal/mol (11055.6793 without restraints) Performing minimization step: 1174. Total energy = 11056.5344 kcal/mol (11044.9129 without restraints) Performing minimization step: 1175. Total energy = 11045.7808 kcal/mol (11034.1653 without restraints) Performing minimization step: 1176. Total energy = 11035.0464 kcal/mol (11023.4364 without restraints) Performing minimization step: 1177. Total energy = 11024.3307 kcal/mol (11012.7264 without restraints) Performing minimization step: 1178. Total energy = 11013.6333 kcal/mol (11002.0348 without restraints) Performing minimization step: 1179. Total energy = 11002.9551 kcal/mol (10991.3623 without restraints) Performing minimization step: 1180. Total energy = 10992.2958 kcal/mol (10980.7087 without restraints) Performing minimization step: 1181. Total energy = 10981.6550 kcal/mol (10970.0736 without restraints) Performing minimization step: 1182. Total energy = 10971.0332 kcal/mol (10959.4577 without restraints) Performing minimization step: 1183. Total energy = 10960.4299 kcal/mol (10948.8600 without restraints) Performing minimization step: 1184. Total energy = 10949.8452 kcal/mol (10938.2809 without restraints) Performing minimization step: 1185. Total energy = 10939.2789 kcal/mol (10927.7203 without restraints) Performing minimization step: 1186. Total energy = 10928.7309 kcal/mol (10917.1780 without restraints) Performing minimization step: 1187. Total energy = 10918.2016 kcal/mol (10906.6544 without restraints) Performing minimization step: 1188. Total energy = 10907.6908 kcal/mol (10896.1492 without restraints) Performing minimization step: 1189. Total energy = 10897.1980 kcal/mol (10885.6621 without restraints) Performing minimization step: 1190. Total energy = 10886.7239 kcal/mol (10875.1936 without restraints) Performing minimization step: 1191. Total energy = 10876.2683 kcal/mol (10864.7437 without restraints) Performing minimization step: 1192. Total energy = 10865.8310 kcal/mol (10854.3123 without restraints) Performing minimization step: 1193. Total energy = 10855.4120 kcal/mol (10843.8987 without restraints) Performing minimization step: 1194. Total energy = 10845.0109 kcal/mol (10833.5032 without restraints) Performing minimization step: 1195. Total energy = 10834.6279 kcal/mol (10823.1258 without restraints) Performing minimization step: 1196. Total energy = 10824.2635 kcal/mol (10812.7671 without restraints) Performing minimization step: 1197. Total energy = 10813.9168 kcal/mol (10802.4260 without restraints) Performing minimization step: 1198. Total energy = 10803.5884 kcal/mol (10792.1032 without restraints) Performing minimization step: 1199. Total energy = 10793.2780 kcal/mol (10781.7984 without restraints) Performing minimization step: 1200. Total energy = 10782.9854 kcal/mol (10771.5114 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 10772.7112 kcal/mol (10761.2427 without restraints) Performing minimization step: 1202. Total energy = 10762.4539 kcal/mol (10750.9911 without restraints) Performing minimization step: 1203. Total energy = 10752.2150 kcal/mol (10740.7579 without restraints) Performing minimization step: 1204. Total energy = 10741.9943 kcal/mol (10730.5426 without restraints) Performing minimization step: 1205. Total energy = 10731.7910 kcal/mol (10720.3449 without restraints) Performing minimization step: 1206. Total energy = 10721.6061 kcal/mol (10710.1656 without restraints) Performing minimization step: 1207. Total energy = 10711.4386 kcal/mol (10700.0038 without restraints) Performing minimization step: 1208. Total energy = 10701.2887 kcal/mol (10689.8593 without restraints) Performing minimization step: 1209. Total energy = 10691.1560 kcal/mol (10679.7320 without restraints) Performing minimization step: 1210. Total energy = 10681.0410 kcal/mol (10669.6227 without restraints) Performing minimization step: 1211. Total energy = 10670.9442 kcal/mol (10659.5314 without restraints) Performing minimization step: 1212. Total energy = 10660.8642 kcal/mol (10649.4570 without restraints) Performing minimization step: 1213. Total energy = 10650.8024 kcal/mol (10639.4007 without restraints) Performing minimization step: 1214. Total energy = 10640.7575 kcal/mol (10629.3613 without restraints) Performing minimization step: 1215. Total energy = 10630.7299 kcal/mol (10619.3393 without restraints) Performing minimization step: 1216. Total energy = 10620.7199 kcal/mol (10609.3348 without restraints) Performing minimization step: 1217. Total energy = 10610.7272 kcal/mol (10599.3476 without restraints) Performing minimization step: 1218. Total energy = 10600.7519 kcal/mol (10589.3778 without restraints) Performing minimization step: 1219. Total energy = 10590.7935 kcal/mol (10579.4248 without restraints) Performing minimization step: 1220. Total energy = 10580.8524 kcal/mol (10569.4892 without restraints) Performing minimization step: 1221. Total energy = 10570.9288 kcal/mol (10559.5711 without restraints) Performing minimization step: 1222. Total energy = 10561.0228 kcal/mol (10549.6706 without restraints) Performing minimization step: 1223. Total energy = 10551.1338 kcal/mol (10539.7871 without restraints) Performing minimization step: 1224. Total energy = 10541.2617 kcal/mol (10529.9206 without restraints) Performing minimization step: 1225. Total energy = 10531.4065 kcal/mol (10520.0707 without restraints) Performing minimization step: 1226. Total energy = 10521.5686 kcal/mol (10510.2383 without restraints) Performing minimization step: 1227. Total energy = 10511.7477 kcal/mol (10500.4229 without restraints) Performing minimization step: 1228. Total energy = 10501.9437 kcal/mol (10490.6242 without restraints) Performing minimization step: 1229. Total energy = 10492.1566 kcal/mol (10480.8426 without restraints) Performing minimization step: 1230. Total energy = 10482.3865 kcal/mol (10471.0779 without restraints) Performing minimization step: 1231. Total energy = 10472.6329 kcal/mol (10461.3298 without restraints) Performing minimization step: 1232. Total energy = 10462.8963 kcal/mol (10451.5985 without restraints) Performing minimization step: 1233. Total energy = 10453.1764 kcal/mol (10441.8841 without restraints) Performing minimization step: 1234. Total energy = 10443.4734 kcal/mol (10432.1865 without restraints) Performing minimization step: 1235. Total energy = 10433.7869 kcal/mol (10422.5054 without restraints) Performing minimization step: 1236. Total energy = 10424.1178 kcal/mol (10412.8417 without restraints) Performing minimization step: 1237. Total energy = 10414.4644 kcal/mol (10403.1937 without restraints) Performing minimization step: 1238. Total energy = 10404.8280 kcal/mol (10393.5626 without restraints) Performing minimization step: 1239. Total energy = 10395.2079 kcal/mol (10383.9479 without restraints) Performing minimization step: 1240. Total energy = 10385.6046 kcal/mol (10374.3500 without restraints) Performing minimization step: 1241. Total energy = 10376.0175 kcal/mol (10364.7683 without restraints) Performing minimization step: 1242. Total energy = 10366.4471 kcal/mol (10355.2033 without restraints) Performing minimization step: 1243. Total energy = 10356.8930 kcal/mol (10345.6545 without restraints) Performing minimization step: 1244. Total energy = 10347.3552 kcal/mol (10336.1221 without restraints) Performing minimization step: 1245. Total energy = 10337.8335 kcal/mol (10326.6057 without restraints) Performing minimization step: 1246. Total energy = 10328.3284 kcal/mol (10317.1059 without restraints) Performing minimization step: 1247. Total energy = 10318.8396 kcal/mol (10307.6224 without restraints) Performing minimization step: 1248. Total energy = 10309.3669 kcal/mol (10298.1551 without restraints) Performing minimization step: 1249. Total energy = 10299.9109 kcal/mol (10288.7044 without restraints) Performing minimization step: 1250. Total energy = 10290.4707 kcal/mol (10279.2695 without restraints) Performing minimization step: 1251. Total energy = 10281.0462 kcal/mol (10269.8503 without restraints) Performing minimization step: 1252. Total energy = 10271.6384 kcal/mol (10260.4478 without restraints) Performing minimization step: 1253. Total energy = 10262.2466 kcal/mol (10251.0614 without restraints) Performing minimization step: 1254. Total energy = 10252.8711 kcal/mol (10241.6911 without restraints) Performing minimization step: 1255. Total energy = 10243.5112 kcal/mol (10232.3365 without restraints) Performing minimization step: 1256. Total energy = 10234.1666 kcal/mol (10222.9972 without restraints) Performing minimization step: 1257. Total energy = 10224.8386 kcal/mol (10213.6745 without restraints) Performing minimization step: 1258. Total energy = 10215.5265 kcal/mol (10204.3677 without restraints) Performing minimization step: 1259. Total energy = 10206.2302 kcal/mol (10195.0766 without restraints) Performing minimization step: 1260. Total energy = 10196.9496 kcal/mol (10185.8012 without restraints) Performing minimization step: 1261. Total energy = 10187.6844 kcal/mol (10176.5413 without restraints) Performing minimization step: 1262. Total energy = 10178.4352 kcal/mol (10167.2974 without restraints) Performing minimization step: 1263. Total energy = 10169.2020 kcal/mol (10158.0694 without restraints) Performing minimization step: 1264. Total energy = 10159.9842 kcal/mol (10148.8569 without restraints) Performing minimization step: 1265. Total energy = 10150.7823 kcal/mol (10139.6602 without restraints) Performing minimization step: 1266. Total energy = 10141.5960 kcal/mol (10130.4791 without restraints) Performing minimization step: 1267. Total energy = 10132.4255 kcal/mol (10121.3139 without restraints) Performing minimization step: 1268. Total energy = 10123.2704 kcal/mol (10112.1639 without restraints) Performing minimization step: 1269. Total energy = 10114.1307 kcal/mol (10103.0295 without restraints) Performing minimization step: 1270. Total energy = 10105.0067 kcal/mol (10093.9107 without restraints) Performing minimization step: 1271. Total energy = 10095.8977 kcal/mol (10084.8068 without restraints) Performing minimization step: 1272. Total energy = 10086.8044 kcal/mol (10075.7189 without restraints) Performing minimization step: 1273. Total energy = 10077.7267 kcal/mol (10066.6462 without restraints) Performing minimization step: 1274. Total energy = 10068.6643 kcal/mol (10057.5890 without restraints) Performing minimization step: 1275. Total energy = 10059.6173 kcal/mol (10048.5472 without restraints) Performing minimization step: 1276. Total energy = 10050.5851 kcal/mol (10039.5201 without restraints) Performing minimization step: 1277. Total energy = 10041.5682 kcal/mol (10030.5084 without restraints) Performing minimization step: 1278. Total energy = 10032.5667 kcal/mol (10021.5120 without restraints) Performing minimization step: 1279. Total energy = 10023.5801 kcal/mol (10012.5306 without restraints) Performing minimization step: 1280. Total energy = 10014.6091 kcal/mol (10003.5648 without restraints) Performing minimization step: 1281. Total energy = 10005.6527 kcal/mol (9994.6136 without restraints) Performing minimization step: 1282. Total energy = 9996.7115 kcal/mol (9985.6775 without restraints) Performing minimization step: 1283. Total energy = 9987.7855 kcal/mol (9976.7566 without restraints) Performing minimization step: 1284. Total energy = 9978.8743 kcal/mol (9967.8505 without restraints) Performing minimization step: 1285. Total energy = 9969.9782 kcal/mol (9958.9595 without restraints) Performing minimization step: 1286. Total energy = 9961.0975 kcal/mol (9950.0839 without restraints) Performing minimization step: 1287. Total energy = 9952.2308 kcal/mol (9941.2221 without restraints) Performing minimization step: 1288. Total energy = 9943.3790 kcal/mol (9932.3756 without restraints) Performing minimization step: 1289. Total energy = 9934.5420 kcal/mol (9923.5437 without restraints) Performing minimization step: 1290. Total energy = 9925.7199 kcal/mol (9914.7268 without restraints) Performing minimization step: 1291. Total energy = 9916.9130 kcal/mol (9905.9248 without restraints) Performing minimization step: 1292. Total energy = 9908.1207 kcal/mol (9897.1376 without restraints) Performing minimization step: 1293. Total energy = 9899.3431 kcal/mol (9888.3651 without restraints) Performing minimization step: 1294. Total energy = 9890.5799 kcal/mol (9879.6070 without restraints) Performing minimization step: 1295. Total energy = 9881.8313 kcal/mol (9870.8635 without restraints) Performing minimization step: 1296. Total energy = 9873.0977 kcal/mol (9862.1351 without restraints) Performing minimization step: 1297. Total energy = 9864.3789 kcal/mol (9853.4213 without restraints) Performing minimization step: 1298. Total energy = 9855.6742 kcal/mol (9844.7215 without restraints) Performing minimization step: 1299. Total energy = 9846.9838 kcal/mol (9836.0361 without restraints) Performing minimization step: 1300. Total energy = 9838.3078 kcal/mol (9827.3652 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 9829.6464 kcal/mol (9818.7087 without restraints) Performing minimization step: 1302. Total energy = 9820.9994 kcal/mol (9810.0669 without restraints) Performing minimization step: 1303. Total energy = 9812.3669 kcal/mol (9801.4392 without restraints) Performing minimization step: 1304. Total energy = 9803.7482 kcal/mol (9792.8255 without restraints) Performing minimization step: 1305. Total energy = 9795.1441 kcal/mol (9784.2266 without restraints) Performing minimization step: 1306. Total energy = 9786.5541 kcal/mol (9775.6415 without restraints) Performing minimization step: 1307. Total energy = 9777.9784 kcal/mol (9767.0708 without restraints) Performing minimization step: 1308. Total energy = 9769.4170 kcal/mol (9758.5144 without restraints) Performing minimization step: 1309. Total energy = 9760.8696 kcal/mol (9749.9720 without restraints) Performing minimization step: 1310. Total energy = 9752.3365 kcal/mol (9741.4438 without restraints) Performing minimization step: 1311. Total energy = 9743.8178 kcal/mol (9732.9301 without restraints) Performing minimization step: 1312. Total energy = 9735.3134 kcal/mol (9724.4307 without restraints) Performing minimization step: 1313. Total energy = 9726.8229 kcal/mol (9715.9451 without restraints) Performing minimization step: 1314. Total energy = 9718.3462 kcal/mol (9707.4734 without restraints) Performing minimization step: 1315. Total energy = 9709.8830 kcal/mol (9699.0150 without restraints) Performing minimization step: 1316. Total energy = 9701.4339 kcal/mol (9690.5711 without restraints) Performing minimization step: 1317. Total energy = 9692.9992 kcal/mol (9682.1412 without restraints) Performing minimization step: 1318. Total energy = 9684.5783 kcal/mol (9673.7252 without restraints) Performing minimization step: 1319. Total energy = 9676.1712 kcal/mol (9665.3231 without restraints) Performing minimization step: 1320. Total energy = 9667.7778 kcal/mol (9656.9344 without restraints) Performing minimization step: 1321. Total energy = 9659.3978 kcal/mol (9648.5594 without restraints) Performing minimization step: 1322. Total energy = 9651.0316 kcal/mol (9640.1982 without restraints) Performing minimization step: 1323. Total energy = 9642.6791 kcal/mol (9631.8506 without restraints) Performing minimization step: 1324. Total energy = 9634.3403 kcal/mol (9623.5167 without restraints) Performing minimization step: 1325. Total energy = 9626.0154 kcal/mol (9615.1967 without restraints) Performing minimization step: 1326. Total energy = 9617.7039 kcal/mol (9606.8900 without restraints) Performing minimization step: 1327. Total energy = 9609.4060 kcal/mol (9598.5970 without restraints) Performing minimization step: 1328. Total energy = 9601.1217 kcal/mol (9590.3176 without restraints) Performing minimization step: 1329. Total energy = 9592.8511 kcal/mol (9582.0521 without restraints) Performing minimization step: 1330. Total energy = 9584.5937 kcal/mol (9573.7994 without restraints) Performing minimization step: 1331. Total energy = 9576.3496 kcal/mol (9565.5600 without restraints) Performing minimization step: 1332. Total energy = 9568.1192 kcal/mol (9557.3348 without restraints) Performing minimization step: 1333. Total energy = 9559.9023 kcal/mol (9549.1225 without restraints) Performing minimization step: 1334. Total energy = 9551.6986 kcal/mol (9540.9238 without restraints) Performing minimization step: 1335. Total energy = 9543.5085 kcal/mol (9532.7382 without restraints) Performing minimization step: 1336. Total energy = 9535.3312 kcal/mol (9524.5659 without restraints) Performing minimization step: 1337. Total energy = 9527.1674 kcal/mol (9516.4069 without restraints) Performing minimization step: 1338. Total energy = 9519.0167 kcal/mol (9508.2611 without restraints) Performing minimization step: 1339. Total energy = 9510.8794 kcal/mol (9500.1285 without restraints) Performing minimization step: 1340. Total energy = 9502.7551 kcal/mol (9492.0090 without restraints) Performing minimization step: 1341. Total energy = 9494.6441 kcal/mol (9483.9028 without restraints) Performing minimization step: 1342. Total energy = 9486.5463 kcal/mol (9475.8099 without restraints) Performing minimization step: 1343. Total energy = 9478.4619 kcal/mol (9467.7302 without restraints) Performing minimization step: 1344. Total energy = 9470.3900 kcal/mol (9459.6631 without restraints) Performing minimization step: 1345. Total energy = 9462.3312 kcal/mol (9451.6090 without restraints) Performing minimization step: 1346. Total energy = 9454.2853 kcal/mol (9443.5679 without restraints) Performing minimization step: 1347. Total energy = 9446.2523 kcal/mol (9435.5399 without restraints) Performing minimization step: 1348. Total energy = 9438.2323 kcal/mol (9427.5244 without restraints) Performing minimization step: 1349. Total energy = 9430.2253 kcal/mol (9419.5223 without restraints) Performing minimization step: 1350. Total energy = 9422.2311 kcal/mol (9411.5328 without restraints) Performing minimization step: 1351. Total energy = 9414.2497 kcal/mol (9403.5561 without restraints) Performing minimization step: 1352. Total energy = 9406.2811 kcal/mol (9395.5923 without restraints) Performing minimization step: 1353. Total energy = 9398.3253 kcal/mol (9387.6412 without restraints) Performing minimization step: 1354. Total energy = 9390.3822 kcal/mol (9379.7028 without restraints) Performing minimization step: 1355. Total energy = 9382.4519 kcal/mol (9371.7772 without restraints) Performing minimization step: 1356. Total energy = 9374.5339 kcal/mol (9363.8640 without restraints) Performing minimization step: 1357. Total energy = 9366.6288 kcal/mol (9355.9636 without restraints) Performing minimization step: 1358. Total energy = 9358.7364 kcal/mol (9348.0759 without restraints) Performing minimization step: 1359. Total energy = 9350.8566 kcal/mol (9340.2008 without restraints) Performing minimization step: 1360. Total energy = 9342.9894 kcal/mol (9332.3384 without restraints) Performing minimization step: 1361. Total energy = 9335.1348 kcal/mol (9324.4883 without restraints) Performing minimization step: 1362. Total energy = 9327.2926 kcal/mol (9316.6509 without restraints) Performing minimization step: 1363. Total energy = 9319.4624 kcal/mol (9308.8251 without restraints) Performing minimization step: 1364. Total energy = 9311.6453 kcal/mol (9301.0129 without restraints) Performing minimization step: 1365. Total energy = 9303.8404 kcal/mol (9293.2127 without restraints) Performing minimization step: 1366. Total energy = 9296.0479 kcal/mol (9285.4249 without restraints) Performing minimization step: 1367. Total energy = 9288.2680 kcal/mol (9277.6496 without restraints) Performing minimization step: 1368. Total energy = 9280.5002 kcal/mol (9269.8864 without restraints) Performing minimization step: 1369. Total energy = 9272.7446 kcal/mol (9262.1355 without restraints) Performing minimization step: 1370. Total energy = 9265.0015 kcal/mol (9254.3970 without restraints) Performing minimization step: 1371. Total energy = 9257.2704 kcal/mol (9246.6706 without restraints) Performing minimization step: 1372. Total energy = 9249.5518 kcal/mol (9238.9566 without restraints) Performing minimization step: 1373. Total energy = 9241.8451 kcal/mol (9231.2545 without restraints) Performing minimization step: 1374. Total energy = 9234.1507 kcal/mol (9223.5648 without restraints) Performing minimization step: 1375. Total energy = 9226.4680 kcal/mol (9215.8866 without restraints) Performing minimization step: 1376. Total energy = 9218.7977 kcal/mol (9208.2209 without restraints) Performing minimization step: 1377. Total energy = 9211.1400 kcal/mol (9200.5679 without restraints) Performing minimization step: 1378. Total energy = 9203.4937 kcal/mol (9192.9262 without restraints) Performing minimization step: 1379. Total energy = 9195.8596 kcal/mol (9185.2966 without restraints) Performing minimization step: 1380. Total energy = 9188.2373 kcal/mol (9177.6790 without restraints) Performing minimization step: 1381. Total energy = 9180.6269 kcal/mol (9170.0731 without restraints) Performing minimization step: 1382. Total energy = 9173.0287 kcal/mol (9162.4795 without restraints) Performing minimization step: 1383. Total energy = 9165.4424 kcal/mol (9154.8977 without restraints) Performing minimization step: 1384. Total energy = 9157.8678 kcal/mol (9147.3277 without restraints) Performing minimization step: 1385. Total energy = 9150.3051 kcal/mol (9139.7697 without restraints) Performing minimization step: 1386. Total energy = 9142.7543 kcal/mol (9132.2233 without restraints) Performing minimization step: 1387. Total energy = 9135.2151 kcal/mol (9124.6887 without restraints) Performing minimization step: 1388. Total energy = 9127.6877 kcal/mol (9117.1658 without restraints) Performing minimization step: 1389. Total energy = 9120.1717 kcal/mol (9109.6544 without restraints) Performing minimization step: 1390. Total energy = 9112.6676 kcal/mol (9102.1549 without restraints) Performing minimization step: 1391. Total energy = 9105.1753 kcal/mol (9094.6671 without restraints) Performing minimization step: 1392. Total energy = 9097.6947 kcal/mol (9087.1910 without restraints) Performing minimization step: 1393. Total energy = 9090.2256 kcal/mol (9079.7264 without restraints) Performing minimization step: 1394. Total energy = 9082.7680 kcal/mol (9072.2734 without restraints) Performing minimization step: 1395. Total energy = 9075.3225 kcal/mol (9064.8323 without restraints) Performing minimization step: 1396. Total energy = 9067.8879 kcal/mol (9057.4023 without restraints) Performing minimization step: 1397. Total energy = 9060.4649 kcal/mol (9049.9838 without restraints) Performing minimization step: 1398. Total energy = 9053.0533 kcal/mol (9042.5766 without restraints) Performing minimization step: 1399. Total energy = 9045.6532 kcal/mol (9035.1810 without restraints) Performing minimization step: 1400. Total energy = 9038.2645 kcal/mol (9027.7968 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 9030.8876 kcal/mol (9020.4244 without restraints) Performing minimization step: 1402. Total energy = 9023.5217 kcal/mol (9013.0630 without restraints) Performing minimization step: 1403. Total energy = 9016.1673 kcal/mol (9005.7130 without restraints) Performing minimization step: 1404. Total energy = 9008.8241 kcal/mol (8998.3744 without restraints) Performing minimization step: 1405. Total energy = 9001.4919 kcal/mol (8991.0464 without restraints) Performing minimization step: 1406. Total energy = 8994.1709 kcal/mol (8983.7300 without restraints) Performing minimization step: 1407. Total energy = 8986.8613 kcal/mol (8976.4248 without restraints) Performing minimization step: 1408. Total energy = 8979.5624 kcal/mol (8969.1303 without restraints) Performing minimization step: 1409. Total energy = 8972.2757 kcal/mol (8961.8482 without restraints) Performing minimization step: 1410. Total energy = 8964.9999 kcal/mol (8954.5768 without restraints) Performing minimization step: 1411. Total energy = 8957.7349 kcal/mol (8947.3162 without restraints) Performing minimization step: 1412. Total energy = 8950.4811 kcal/mol (8940.0668 without restraints) Performing minimization step: 1413. Total energy = 8943.2380 kcal/mol (8932.8282 without restraints) Performing minimization step: 1414. Total energy = 8936.0058 kcal/mol (8925.6003 without restraints) Performing minimization step: 1415. Total energy = 8928.7847 kcal/mol (8918.3836 without restraints) Performing minimization step: 1416. Total energy = 8921.5756 kcal/mol (8911.1791 without restraints) Performing minimization step: 1417. Total energy = 8914.3766 kcal/mol (8903.9844 without restraints) Performing minimization step: 1418. Total energy = 8907.1887 kcal/mol (8896.8008 without restraints) Performing minimization step: 1419. Total energy = 8900.0118 kcal/mol (8889.6282 without restraints) Performing minimization step: 1420. Total energy = 8892.8458 kcal/mol (8882.4667 without restraints) Performing minimization step: 1421. Total energy = 8885.6905 kcal/mol (8875.3158 without restraints) Performing minimization step: 1422. Total energy = 8878.5462 kcal/mol (8868.1759 without restraints) Performing minimization step: 1423. Total energy = 8871.4127 kcal/mol (8861.0468 without restraints) Performing minimization step: 1424. Total energy = 8864.2899 kcal/mol (8853.9283 without restraints) Performing minimization step: 1425. Total energy = 8857.1777 kcal/mol (8846.8205 without restraints) Performing minimization step: 1426. Total energy = 8850.0762 kcal/mol (8839.7234 without restraints) Performing minimization step: 1427. Total energy = 8842.9855 kcal/mol (8832.6370 without restraints) Performing minimization step: 1428. Total energy = 8835.9054 kcal/mol (8825.5612 without restraints) Performing minimization step: 1429. Total energy = 8828.8360 kcal/mol (8818.4961 without restraints) Performing minimization step: 1430. Total energy = 8821.7772 kcal/mol (8811.4417 without restraints) Performing minimization step: 1431. Total energy = 8814.7289 kcal/mol (8804.3978 without restraints) Performing minimization step: 1432. Total energy = 8807.6916 kcal/mol (8797.3647 without restraints) Performing minimization step: 1433. Total energy = 8800.6642 kcal/mol (8790.3416 without restraints) Performing minimization step: 1434. Total energy = 8793.6478 kcal/mol (8783.3296 without restraints) Performing minimization step: 1435. Total energy = 8786.6418 kcal/mol (8776.3278 without restraints) Performing minimization step: 1436. Total energy = 8779.6461 kcal/mol (8769.3365 without restraints) Performing minimization step: 1437. Total energy = 8772.6609 kcal/mol (8762.3556 without restraints) Performing minimization step: 1438. Total energy = 8765.6861 kcal/mol (8755.3851 without restraints) Performing minimization step: 1439. Total energy = 8758.7221 kcal/mol (8748.4254 without restraints) Performing minimization step: 1440. Total energy = 8751.7681 kcal/mol (8741.4757 without restraints) Performing minimization step: 1441. Total energy = 8744.8242 kcal/mol (8734.5360 without restraints) Performing minimization step: 1442. Total energy = 8737.8907 kcal/mol (8727.6067 without restraints) Performing minimization step: 1443. Total energy = 8730.9675 kcal/mol (8720.6878 without restraints) Performing minimization step: 1444. Total energy = 8724.0546 kcal/mol (8713.7792 without restraints) Performing minimization step: 1445. Total energy = 8717.1520 kcal/mol (8706.8809 without restraints) Performing minimization step: 1446. Total energy = 8710.2600 kcal/mol (8699.9932 without restraints) Performing minimization step: 1447. Total energy = 8703.3783 kcal/mol (8693.1157 without restraints) Performing minimization step: 1448. Total energy = 8696.5063 kcal/mol (8686.2479 without restraints) Performing minimization step: 1449. Total energy = 8689.6444 kcal/mol (8679.3903 without restraints) Performing minimization step: 1450. Total energy = 8682.7925 kcal/mol (8672.5427 without restraints) Performing minimization step: 1451. Total energy = 8675.9511 kcal/mol (8665.7054 without restraints) Performing minimization step: 1452. Total energy = 8669.1196 kcal/mol (8658.8782 without restraints) Performing minimization step: 1453. Total energy = 8662.2983 kcal/mol (8652.0613 without restraints) Performing minimization step: 1454. Total energy = 8655.4871 kcal/mol (8645.2542 without restraints) Performing minimization step: 1455. Total energy = 8648.6849 kcal/mol (8638.4562 without restraints) Performing minimization step: 1456. Total energy = 8641.8935 kcal/mol (8631.6689 without restraints) Performing minimization step: 1457. Total energy = 8635.1119 kcal/mol (8624.8915 without restraints) Performing minimization step: 1458. Total energy = 8628.3401 kcal/mol (8618.1240 without restraints) Performing minimization step: 1459. Total energy = 8621.5785 kcal/mol (8611.3666 without restraints) Performing minimization step: 1460. Total energy = 8614.8264 kcal/mol (8604.6186 without restraints) Performing minimization step: 1461. Total energy = 8608.0845 kcal/mol (8597.8810 without restraints) Performing minimization step: 1462. Total energy = 8601.3520 kcal/mol (8591.1527 without restraints) Performing minimization step: 1463. Total energy = 8594.6297 kcal/mol (8584.4345 without restraints) Performing minimization step: 1464. Total energy = 8587.9169 kcal/mol (8577.7258 without restraints) Performing minimization step: 1465. Total energy = 8581.2138 kcal/mol (8571.0270 without restraints) Performing minimization step: 1466. Total energy = 8574.5209 kcal/mol (8564.3382 without restraints) Performing minimization step: 1467. Total energy = 8567.8374 kcal/mol (8557.6590 without restraints) Performing minimization step: 1468. Total energy = 8561.1636 kcal/mol (8550.9892 without restraints) Performing minimization step: 1469. Total energy = 8554.4997 kcal/mol (8544.3295 without restraints) Performing minimization step: 1470. Total energy = 8547.8454 kcal/mol (8537.6794 without restraints) Performing minimization step: 1471. Total energy = 8541.2006 kcal/mol (8531.0387 without restraints) Performing minimization step: 1472. Total energy = 8534.5654 kcal/mol (8524.4076 without restraints) Performing minimization step: 1473. Total energy = 8527.9397 kcal/mol (8517.7861 without restraints) Performing minimization step: 1474. Total energy = 8521.3236 kcal/mol (8511.1741 without restraints) Performing minimization step: 1475. Total energy = 8514.7167 kcal/mol (8504.5713 without restraints) Performing minimization step: 1476. Total energy = 8508.1192 kcal/mol (8497.9779 without restraints) Performing minimization step: 1477. Total energy = 8501.5314 kcal/mol (8491.3942 without restraints) Performing minimization step: 1478. Total energy = 8494.9534 kcal/mol (8484.8204 without restraints) Performing minimization step: 1479. Total energy = 8488.3845 kcal/mol (8478.2556 without restraints) Performing minimization step: 1480. Total energy = 8481.8252 kcal/mol (8471.7004 without restraints) Performing minimization step: 1481. Total energy = 8475.2754 kcal/mol (8465.1547 without restraints) Performing minimization step: 1482. Total energy = 8468.7349 kcal/mol (8458.6183 without restraints) Performing minimization step: 1483. Total energy = 8462.2037 kcal/mol (8452.0912 without restraints) Performing minimization step: 1484. Total energy = 8455.6820 kcal/mol (8445.5736 without restraints) Performing minimization step: 1485. Total energy = 8449.1696 kcal/mol (8439.0653 without restraints) Performing minimization step: 1486. Total energy = 8442.6665 kcal/mol (8432.5664 without restraints) Performing minimization step: 1487. Total energy = 8436.1729 kcal/mol (8426.0767 without restraints) Performing minimization step: 1488. Total energy = 8429.6882 kcal/mol (8419.5961 without restraints) Performing minimization step: 1489. Total energy = 8423.2126 kcal/mol (8413.1245 without restraints) Performing minimization step: 1490. Total energy = 8416.7464 kcal/mol (8406.6624 without restraints) Performing minimization step: 1491. Total energy = 8410.2889 kcal/mol (8400.2088 without restraints) Performing minimization step: 1492. Total energy = 8403.8411 kcal/mol (8393.7652 without restraints) Performing minimization step: 1493. Total energy = 8397.4022 kcal/mol (8387.3304 without restraints) Performing minimization step: 1494. Total energy = 8390.9724 kcal/mol (8380.9046 without restraints) Performing minimization step: 1495. Total energy = 8384.5520 kcal/mol (8374.4883 without restraints) Performing minimization step: 1496. Total energy = 8378.1403 kcal/mol (8368.0806 without restraints) Performing minimization step: 1497. Total energy = 8371.7377 kcal/mol (8361.6820 without restraints) Performing minimization step: 1498. Total energy = 8365.3441 kcal/mol (8355.2923 without restraints) Performing minimization step: 1499. Total energy = 8358.9599 kcal/mol (8348.9123 without restraints) Performing minimization step: 1500. Total energy = 8352.5846 kcal/mol (8342.5410 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 8346.2181 kcal/mol (8336.1785 without restraints) Performing minimization step: 1502. Total energy = 8339.8604 kcal/mol (8329.8247 without restraints) Performing minimization step: 1503. Total energy = 8333.5121 kcal/mol (8323.4806 without restraints) Performing minimization step: 1504. Total energy = 8327.1723 kcal/mol (8317.1447 without restraints) Performing minimization step: 1505. Total energy = 8320.8416 kcal/mol (8310.8181 without restraints) Performing minimization step: 1506. Total energy = 8314.5199 kcal/mol (8304.5004 without restraints) Performing minimization step: 1507. Total energy = 8308.2066 kcal/mol (8298.1910 without restraints) Performing minimization step: 1508. Total energy = 8301.9020 kcal/mol (8291.8904 without restraints) Performing minimization step: 1509. Total energy = 8295.6062 kcal/mol (8285.5986 without restraints) Performing minimization step: 1510. Total energy = 8289.3194 kcal/mol (8279.3157 without restraints) Performing minimization step: 1511. Total energy = 8283.0414 kcal/mol (8273.0419 without restraints) Performing minimization step: 1512. Total energy = 8276.7725 kcal/mol (8266.7768 without restraints) Performing minimization step: 1513. Total energy = 8270.5121 kcal/mol (8260.5204 without restraints) Performing minimization step: 1514. Total energy = 8264.2602 kcal/mol (8254.2725 without restraints) Performing minimization step: 1515. Total energy = 8258.0169 kcal/mol (8248.0332 without restraints) Performing minimization step: 1516. Total energy = 8251.7825 kcal/mol (8241.8029 without restraints) Performing minimization step: 1517. Total energy = 8245.5567 kcal/mol (8235.5809 without restraints) Performing minimization step: 1518. Total energy = 8239.3391 kcal/mol (8229.3672 without restraints) Performing minimization step: 1519. Total energy = 8233.1304 kcal/mol (8223.1624 without restraints) Performing minimization step: 1520. Total energy = 8226.9302 kcal/mol (8216.9662 without restraints) Performing minimization step: 1521. Total energy = 8220.7382 kcal/mol (8210.7781 without restraints) Performing minimization step: 1522. Total energy = 8214.5552 kcal/mol (8204.5990 without restraints) Performing minimization step: 1523. Total energy = 8208.3806 kcal/mol (8198.4284 without restraints) Performing minimization step: 1524. Total energy = 8202.2144 kcal/mol (8192.2661 without restraints) Performing minimization step: 1525. Total energy = 8196.0570 kcal/mol (8186.1127 without restraints) Performing minimization step: 1526. Total energy = 8189.9079 kcal/mol (8179.9672 without restraints) Performing minimization step: 1527. Total energy = 8183.7667 kcal/mol (8173.8302 without restraints) Performing minimization step: 1528. Total energy = 8177.6345 kcal/mol (8167.7019 without restraints) Performing minimization step: 1529. Total energy = 8171.5110 kcal/mol (8161.5823 without restraints) Performing minimization step: 1530. Total energy = 8165.3955 kcal/mol (8155.4707 without restraints) Performing minimization step: 1531. Total energy = 8159.2884 kcal/mol (8149.3675 without restraints) Performing minimization step: 1532. Total energy = 8153.1895 kcal/mol (8143.2726 without restraints) Performing minimization step: 1533. Total energy = 8147.0991 kcal/mol (8137.1859 without restraints) Performing minimization step: 1534. Total energy = 8141.0173 kcal/mol (8131.1081 without restraints) Performing minimization step: 1535. Total energy = 8134.9436 kcal/mol (8125.0383 without restraints) Performing minimization step: 1536. Total energy = 8128.8782 kcal/mol (8118.9767 without restraints) Performing minimization step: 1537. Total energy = 8122.8211 kcal/mol (8112.9236 without restraints) Performing minimization step: 1538. Total energy = 8116.7720 kcal/mol (8106.8783 without restraints) Performing minimization step: 1539. Total energy = 8110.7314 kcal/mol (8100.8414 without restraints) Performing minimization step: 1540. Total energy = 8104.6985 kcal/mol (8094.8125 without restraints) Performing minimization step: 1541. Total energy = 8098.6740 kcal/mol (8088.7919 without restraints) Performing minimization step: 1542. Total energy = 8092.6576 kcal/mol (8082.7795 without restraints) Performing minimization step: 1543. Total energy = 8086.6496 kcal/mol (8076.7752 without restraints) Performing minimization step: 1544. Total energy = 8080.6490 kcal/mol (8070.7785 without restraints) Performing minimization step: 1545. Total energy = 8074.6570 kcal/mol (8064.7903 without restraints) Performing minimization step: 1546. Total energy = 8068.6734 kcal/mol (8058.8105 without restraints) Performing minimization step: 1547. Total energy = 8062.6976 kcal/mol (8052.8386 without restraints) Performing minimization step: 1548. Total energy = 8056.7302 kcal/mol (8046.8750 without restraints) Performing minimization step: 1549. Total energy = 8050.7705 kcal/mol (8040.9193 without restraints) Performing minimization step: 1550. Total energy = 8044.8190 kcal/mol (8034.9715 without restraints) Performing minimization step: 1551. Total energy = 8038.8754 kcal/mol (8029.0317 without restraints) Performing minimization step: 1552. Total energy = 8032.9395 kcal/mol (8023.0998 without restraints) Performing minimization step: 1553. Total energy = 8027.0114 kcal/mol (8017.1753 without restraints) Performing minimization step: 1554. Total energy = 8021.0914 kcal/mol (8011.2592 without restraints) Performing minimization step: 1555. Total energy = 8015.1794 kcal/mol (8005.3510 without restraints) Performing minimization step: 1556. Total energy = 8009.2754 kcal/mol (7999.4508 without restraints) Performing minimization step: 1557. Total energy = 8003.3794 kcal/mol (7993.5586 without restraints) Performing minimization step: 1558. Total energy = 7997.4908 kcal/mol (7987.6737 without restraints) Performing minimization step: 1559. Total energy = 7991.6101 kcal/mol (7981.7969 without restraints) Performing minimization step: 1560. Total energy = 7985.7377 kcal/mol (7975.9283 without restraints) Performing minimization step: 1561. Total energy = 7979.8730 kcal/mol (7970.0674 without restraints) Performing minimization step: 1562. Total energy = 7974.0159 kcal/mol (7964.2141 without restraints) Performing minimization step: 1563. Total energy = 7968.1663 kcal/mol (7958.3683 without restraints) Performing minimization step: 1564. Total energy = 7962.3247 kcal/mol (7952.5305 without restraints) Performing minimization step: 1565. Total energy = 7956.4905 kcal/mol (7946.7001 without restraints) Performing minimization step: 1566. Total energy = 7950.6647 kcal/mol (7940.8781 without restraints) Performing minimization step: 1567. Total energy = 7944.8467 kcal/mol (7935.0638 without restraints) Performing minimization step: 1568. Total energy = 7939.0360 kcal/mol (7929.2569 without restraints) Performing minimization step: 1569. Total energy = 7933.2329 kcal/mol (7923.4574 without restraints) Performing minimization step: 1570. Total energy = 7927.4373 kcal/mol (7917.6658 without restraints) Performing minimization step: 1571. Total energy = 7921.6504 kcal/mol (7911.8827 without restraints) Performing minimization step: 1572. Total energy = 7915.8705 kcal/mol (7906.1064 without restraints) Performing minimization step: 1573. Total energy = 7910.0979 kcal/mol (7900.3375 without restraints) Performing minimization step: 1574. Total energy = 7904.3329 kcal/mol (7894.5763 without restraints) Performing minimization step: 1575. Total energy = 7898.5756 kcal/mol (7888.8227 without restraints) Performing minimization step: 1576. Total energy = 7892.8258 kcal/mol (7883.0767 without restraints) Performing minimization step: 1577. Total energy = 7887.0838 kcal/mol (7877.3385 without restraints) Performing minimization step: 1578. Total energy = 7881.3491 kcal/mol (7871.6075 without restraints) Performing minimization step: 1579. Total energy = 7875.6220 kcal/mol (7865.8841 without restraints) Performing minimization step: 1580. Total energy = 7869.9023 kcal/mol (7860.1682 without restraints) Performing minimization step: 1581. Total energy = 7864.1899 kcal/mol (7854.4595 without restraints) Performing minimization step: 1582. Total energy = 7858.4852 kcal/mol (7848.7587 without restraints) Performing minimization step: 1583. Total energy = 7852.7882 kcal/mol (7843.0653 without restraints) Performing minimization step: 1584. Total energy = 7847.0983 kcal/mol (7837.3791 without restraints) Performing minimization step: 1585. Total energy = 7841.4159 kcal/mol (7831.7004 without restraints) Performing minimization step: 1586. Total energy = 7835.7410 kcal/mol (7826.0292 without restraints) Performing minimization step: 1587. Total energy = 7830.0737 kcal/mol (7820.3656 without restraints) Performing minimization step: 1588. Total energy = 7824.4133 kcal/mol (7814.7090 without restraints) Performing minimization step: 1589. Total energy = 7818.7602 kcal/mol (7809.0595 without restraints) Performing minimization step: 1590. Total energy = 7813.1144 kcal/mol (7803.4174 without restraints) Performing minimization step: 1591. Total energy = 7807.4761 kcal/mol (7797.7828 without restraints) Performing minimization step: 1592. Total energy = 7801.8451 kcal/mol (7792.1556 without restraints) Performing minimization step: 1593. Total energy = 7796.2212 kcal/mol (7786.5353 without restraints) Performing minimization step: 1594. Total energy = 7790.6048 kcal/mol (7780.9226 without restraints) Performing minimization step: 1595. Total energy = 7784.9962 kcal/mol (7775.3177 without restraints) Performing minimization step: 1596. Total energy = 7779.3945 kcal/mol (7769.7197 without restraints) Performing minimization step: 1597. Total energy = 7773.7999 kcal/mol (7764.1288 without restraints) Performing minimization step: 1598. Total energy = 7768.2124 kcal/mol (7758.5450 without restraints) Performing minimization step: 1599. Total energy = 7762.6321 kcal/mol (7752.9683 without restraints) Performing minimization step: 1600. Total energy = 7757.0592 kcal/mol (7747.3991 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 7751.4932 kcal/mol (7741.8367 without restraints) Performing minimization step: 1602. Total energy = 7745.9345 kcal/mol (7736.2818 without restraints) Performing minimization step: 1603. Total energy = 7740.3828 kcal/mol (7730.7337 without restraints) Performing minimization step: 1604. Total energy = 7734.8380 kcal/mol (7725.1923 without restraints) Performing minimization step: 1605. Total energy = 7729.3002 kcal/mol (7719.6584 without restraints) Performing minimization step: 1606. Total energy = 7723.7698 kcal/mol (7714.1317 without restraints) Performing minimization step: 1607. Total energy = 7718.2461 kcal/mol (7708.6116 without restraints) Performing minimization step: 1608. Total energy = 7712.7297 kcal/mol (7703.0989 without restraints) Performing minimization step: 1609. Total energy = 7707.2207 kcal/mol (7697.5936 without restraints) Performing minimization step: 1610. Total energy = 7701.7186 kcal/mol (7692.0950 without restraints) Performing minimization step: 1611. Total energy = 7696.2231 kcal/mol (7686.6030 without restraints) Performing minimization step: 1612. Total energy = 7690.7345 kcal/mol (7681.1182 without restraints) Performing minimization step: 1613. Total energy = 7685.2532 kcal/mol (7675.6406 without restraints) Performing minimization step: 1614. Total energy = 7679.7789 kcal/mol (7670.1699 without restraints) Performing minimization step: 1615. Total energy = 7674.3118 kcal/mol (7664.7064 without restraints) Performing minimization step: 1616. Total energy = 7668.8513 kcal/mol (7659.2494 without restraints) Performing minimization step: 1617. Total energy = 7663.3977 kcal/mol (7653.7996 without restraints) Performing minimization step: 1618. Total energy = 7657.9512 kcal/mol (7648.3566 without restraints) Performing minimization step: 1619. Total energy = 7652.5111 kcal/mol (7642.9202 without restraints) Performing minimization step: 1620. Total energy = 7647.0784 kcal/mol (7637.4913 without restraints) Performing minimization step: 1621. Total energy = 7641.6525 kcal/mol (7632.0688 without restraints) Performing minimization step: 1622. Total energy = 7636.2333 kcal/mol (7626.6533 without restraints) Performing minimization step: 1623. Total energy = 7630.8211 kcal/mol (7621.2446 without restraints) Performing minimization step: 1624. Total energy = 7625.4159 kcal/mol (7615.8430 without restraints) Performing minimization step: 1625. Total energy = 7620.0173 kcal/mol (7610.4480 without restraints) Performing minimization step: 1626. Total energy = 7614.6258 kcal/mol (7605.0600 without restraints) Performing minimization step: 1627. Total energy = 7609.2406 kcal/mol (7599.6785 without restraints) Performing minimization step: 1628. Total energy = 7603.8623 kcal/mol (7594.3038 without restraints) Performing minimization step: 1629. Total energy = 7598.4909 kcal/mol (7588.9361 without restraints) Performing minimization step: 1630. Total energy = 7593.1261 kcal/mol (7583.5748 without restraints) Performing minimization step: 1631. Total energy = 7587.7687 kcal/mol (7578.2214 without restraints) Performing minimization step: 1632. Total energy = 7582.4181 kcal/mol (7572.8740 without restraints) Performing minimization step: 1633. Total energy = 7577.0733 kcal/mol (7567.5328 without restraints) Performing minimization step: 1634. Total energy = 7571.7353 kcal/mol (7562.1983 without restraints) Performing minimization step: 1635. Total energy = 7566.4040 kcal/mol (7556.8708 without restraints) Performing minimization step: 1636. Total energy = 7561.0797 kcal/mol (7551.5499 without restraints) Performing minimization step: 1637. Total energy = 7555.7614 kcal/mol (7546.2352 without restraints) Performing minimization step: 1638. Total energy = 7550.4497 kcal/mol (7540.9270 without restraints) Performing minimization step: 1639. Total energy = 7545.1448 kcal/mol (7535.6256 without restraints) Performing minimization step: 1640. Total energy = 7539.8466 kcal/mol (7530.3311 without restraints) Performing minimization step: 1641. Total energy = 7534.5551 kcal/mol (7525.0431 without restraints) Performing minimization step: 1642. Total energy = 7529.2700 kcal/mol (7519.7616 without restraints) Performing minimization step: 1643. Total energy = 7523.9918 kcal/mol (7514.4870 without restraints) Performing minimization step: 1644. Total energy = 7518.7200 kcal/mol (7509.2187 without restraints) Performing minimization step: 1645. Total energy = 7513.4546 kcal/mol (7503.9568 without restraints) Performing minimization step: 1646. Total energy = 7508.1957 kcal/mol (7498.7015 without restraints) Performing minimization step: 1647. Total energy = 7502.9436 kcal/mol (7493.4529 without restraints) Performing minimization step: 1648. Total energy = 7497.6980 kcal/mol (7488.2109 without restraints) Performing minimization step: 1649. Total energy = 7492.4583 kcal/mol (7482.9745 without restraints) Performing minimization step: 1650. Total energy = 7487.2249 kcal/mol (7477.7448 without restraints) Performing minimization step: 1651. Total energy = 7481.9984 kcal/mol (7472.5220 without restraints) Performing minimization step: 1652. Total energy = 7476.7787 kcal/mol (7467.3057 without restraints) Performing minimization step: 1653. Total energy = 7471.5650 kcal/mol (7462.0956 without restraints) Performing minimization step: 1654. Total energy = 7466.3582 kcal/mol (7456.8923 without restraints) Performing minimization step: 1655. Total energy = 7461.1574 kcal/mol (7451.6950 without restraints) Performing minimization step: 1656. Total energy = 7455.9629 kcal/mol (7446.5040 without restraints) Performing minimization step: 1657. Total energy = 7450.7750 kcal/mol (7441.3196 without restraints) Performing minimization step: 1658. Total energy = 7445.5932 kcal/mol (7436.1414 without restraints) Performing minimization step: 1659. Total energy = 7440.4179 kcal/mol (7430.9695 without restraints) Performing minimization step: 1660. Total energy = 7435.2491 kcal/mol (7425.8042 without restraints) Performing minimization step: 1661. Total energy = 7430.0865 kcal/mol (7420.6452 without restraints) Performing minimization step: 1662. Total energy = 7424.9297 kcal/mol (7415.4919 without restraints) Performing minimization step: 1663. Total energy = 7419.7796 kcal/mol (7410.3453 without restraints) Performing minimization step: 1664. Total energy = 7414.6360 kcal/mol (7405.2052 without restraints) Performing minimization step: 1665. Total energy = 7409.4984 kcal/mol (7400.0711 without restraints) Performing minimization step: 1666. Total energy = 7404.3669 kcal/mol (7394.9431 without restraints) Performing minimization step: 1667. Total energy = 7399.2420 kcal/mol (7389.8217 without restraints) Performing minimization step: 1668. Total energy = 7394.1232 kcal/mol (7384.7064 without restraints) Performing minimization step: 1669. Total energy = 7389.0106 kcal/mol (7379.5973 without restraints) Performing minimization step: 1670. Total energy = 7383.9042 kcal/mol (7374.4944 without restraints) Performing minimization step: 1671. Total energy = 7378.8040 kcal/mol (7369.3977 without restraints) Performing minimization step: 1672. Total energy = 7373.7100 kcal/mol (7364.3072 without restraints) Performing minimization step: 1673. Total energy = 7368.6222 kcal/mol (7359.2228 without restraints) Performing minimization step: 1674. Total energy = 7363.5405 kcal/mol (7354.1446 without restraints) Performing minimization step: 1675. Total energy = 7358.4652 kcal/mol (7349.0730 without restraints) Performing minimization step: 1676. Total energy = 7353.3956 kcal/mol (7344.0067 without restraints) Performing minimization step: 1677. Total energy = 7348.3322 kcal/mol (7338.9468 without restraints) Performing minimization step: 1678. Total energy = 7343.2753 kcal/mol (7333.8933 without restraints) Performing minimization step: 1679. Total energy = 7338.2242 kcal/mol (7328.8457 without restraints) Performing minimization step: 1680. Total energy = 7333.1799 kcal/mol (7323.8050 without restraints) Performing minimization step: 1681. Total energy = 7328.1410 kcal/mol (7318.7694 without restraints) Performing minimization step: 1682. Total energy = 7323.1081 kcal/mol (7313.7400 without restraints) Performing minimization step: 1683. Total energy = 7318.0813 kcal/mol (7308.7167 without restraints) Performing minimization step: 1684. Total energy = 7313.0610 kcal/mol (7303.6998 without restraints) Performing minimization step: 1685. Total energy = 7308.0465 kcal/mol (7298.6887 without restraints) Performing minimization step: 1686. Total energy = 7303.0378 kcal/mol (7293.6836 without restraints) Performing minimization step: 1687. Total energy = 7298.0351 kcal/mol (7288.6843 without restraints) Performing minimization step: 1688. Total energy = 7293.0390 kcal/mol (7283.6917 without restraints) Performing minimization step: 1689. Total energy = 7288.0483 kcal/mol (7278.7044 without restraints) Performing minimization step: 1690. Total energy = 7283.0635 kcal/mol (7273.7231 without restraints) Performing minimization step: 1691. Total energy = 7278.0851 kcal/mol (7268.7481 without restraints) Performing minimization step: 1692. Total energy = 7273.1122 kcal/mol (7263.7787 without restraints) Performing minimization step: 1693. Total energy = 7268.1455 kcal/mol (7258.8154 without restraints) Performing minimization step: 1694. Total energy = 7263.1848 kcal/mol (7253.8581 without restraints) Performing minimization step: 1695. Total energy = 7258.2297 kcal/mol (7248.9064 without restraints) Performing minimization step: 1696. Total energy = 7253.2805 kcal/mol (7243.9607 without restraints) Performing minimization step: 1697. Total energy = 7248.3371 kcal/mol (7239.0207 without restraints) Performing minimization step: 1698. Total energy = 7243.3994 kcal/mol (7234.0865 without restraints) Performing minimization step: 1699. Total energy = 7238.4679 kcal/mol (7229.1583 without restraints) Performing minimization step: 1700. Total energy = 7233.5427 kcal/mol (7224.2366 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 7228.6230 kcal/mol (7219.3203 without restraints) Performing minimization step: 1702. Total energy = 7223.7088 kcal/mol (7214.4095 without restraints) Performing minimization step: 1703. Total energy = 7218.8008 kcal/mol (7209.5050 without restraints) Performing minimization step: 1704. Total energy = 7213.8986 kcal/mol (7204.6061 without restraints) Performing minimization step: 1705. Total energy = 7209.0020 kcal/mol (7199.7129 without restraints) Performing minimization step: 1706. Total energy = 7204.1111 kcal/mol (7194.8255 without restraints) Performing minimization step: 1707. Total energy = 7199.2263 kcal/mol (7189.9441 without restraints) Performing minimization step: 1708. Total energy = 7194.3464 kcal/mol (7185.0676 without restraints) Performing minimization step: 1709. Total energy = 7189.4730 kcal/mol (7180.1976 without restraints) Performing minimization step: 1710. Total energy = 7184.6052 kcal/mol (7175.3332 without restraints) Performing minimization step: 1711. Total energy = 7179.7433 kcal/mol (7170.4748 without restraints) Performing minimization step: 1712. Total energy = 7174.8869 kcal/mol (7165.6218 without restraints) Performing minimization step: 1713. Total energy = 7170.0371 kcal/mol (7160.7753 without restraints) Performing minimization step: 1714. Total energy = 7165.1922 kcal/mol (7155.9338 without restraints) Performing minimization step: 1715. Total energy = 7160.3529 kcal/mol (7151.0979 without restraints) Performing minimization step: 1716. Total energy = 7155.5191 kcal/mol (7146.2675 without restraints) Performing minimization step: 1717. Total energy = 7150.6912 kcal/mol (7141.4430 without restraints) Performing minimization step: 1718. Total energy = 7145.8689 kcal/mol (7136.6241 without restraints) Performing minimization step: 1719. Total energy = 7141.0533 kcal/mol (7131.8119 without restraints) Performing minimization step: 1720. Total energy = 7136.2423 kcal/mol (7127.0043 without restraints) Performing minimization step: 1721. Total energy = 7131.4370 kcal/mol (7122.2025 without restraints) Performing minimization step: 1722. Total energy = 7126.6373 kcal/mol (7117.4060 without restraints) Performing minimization step: 1723. Total energy = 7121.8428 kcal/mol (7112.6148 without restraints) Performing minimization step: 1724. Total energy = 7117.0542 kcal/mol (7107.8297 without restraints) Performing minimization step: 1725. Total energy = 7112.2714 kcal/mol (7103.0502 without restraints) Performing minimization step: 1726. Total energy = 7107.4938 kcal/mol (7098.2761 without restraints) Performing minimization step: 1727. Total energy = 7102.7220 kcal/mol (7093.5076 without restraints) Performing minimization step: 1728. Total energy = 7097.9557 kcal/mol (7088.7447 without restraints) Performing minimization step: 1729. Total energy = 7093.1949 kcal/mol (7083.9873 without restraints) Performing minimization step: 1730. Total energy = 7088.4396 kcal/mol (7079.2354 without restraints) Performing minimization step: 1731. Total energy = 7083.6898 kcal/mol (7074.4890 without restraints) Performing minimization step: 1732. Total energy = 7078.9458 kcal/mol (7069.7483 without restraints) Performing minimization step: 1733. Total energy = 7074.2069 kcal/mol (7065.0127 without restraints) Performing minimization step: 1734. Total energy = 7069.4731 kcal/mol (7060.2822 without restraints) Performing minimization step: 1735. Total energy = 7064.7458 kcal/mol (7055.5585 without restraints) Performing minimization step: 1736. Total energy = 7060.0237 kcal/mol (7050.8395 without restraints) Performing minimization step: 1737. Total energy = 7055.3070 kcal/mol (7046.1263 without restraints) Performing minimization step: 1738. Total energy = 7050.5956 kcal/mol (7041.4182 without restraints) Performing minimization step: 1739. Total energy = 7045.8898 kcal/mol (7036.7159 without restraints) Performing minimization step: 1740. Total energy = 7041.1894 kcal/mol (7032.0187 without restraints) Performing minimization step: 1741. Total energy = 7036.4942 kcal/mol (7027.3269 without restraints) Performing minimization step: 1742. Total energy = 7031.8045 kcal/mol (7022.6405 without restraints) Performing minimization step: 1743. Total energy = 7027.1203 kcal/mol (7017.9597 without restraints) Performing minimization step: 1744. Total energy = 7022.4414 kcal/mol (7013.2842 without restraints) Performing minimization step: 1745. Total energy = 7017.7680 kcal/mol (7008.6141 without restraints) Performing minimization step: 1746. Total energy = 7013.0999 kcal/mol (7003.9494 without restraints) Performing minimization step: 1747. Total energy = 7008.4372 kcal/mol (6999.2901 without restraints) Performing minimization step: 1748. Total energy = 7003.7800 kcal/mol (6994.6363 without restraints) Performing minimization step: 1749. Total energy = 6999.1281 kcal/mol (6989.9875 without restraints) Performing minimization step: 1750. Total energy = 6994.4811 kcal/mol (6985.3439 without restraints) Performing minimization step: 1751. Total energy = 6989.8397 kcal/mol (6980.7059 without restraints) Performing minimization step: 1752. Total energy = 6985.2033 kcal/mol (6976.0727 without restraints) Performing minimization step: 1753. Total energy = 6980.5723 kcal/mol (6971.4451 without restraints) Performing minimization step: 1754. Total energy = 6975.9466 kcal/mol (6966.8227 without restraints) Performing minimization step: 1755. Total energy = 6971.3264 kcal/mol (6962.2059 without restraints) Performing minimization step: 1756. Total energy = 6966.7114 kcal/mol (6957.5941 without restraints) Performing minimization step: 1757. Total energy = 6962.1017 kcal/mol (6952.9878 without restraints) Performing minimization step: 1758. Total energy = 6957.4975 kcal/mol (6948.3869 without restraints) Performing minimization step: 1759. Total energy = 6952.8982 kcal/mol (6943.7909 without restraints) Performing minimization step: 1760. Total energy = 6948.3041 kcal/mol (6939.2002 without restraints) Performing minimization step: 1761. Total energy = 6943.7152 kcal/mol (6934.6145 without restraints) Performing minimization step: 1762. Total energy = 6939.1314 kcal/mol (6930.0340 without restraints) Performing minimization step: 1763. Total energy = 6934.5528 kcal/mol (6925.4587 without restraints) Performing minimization step: 1764. Total energy = 6929.9794 kcal/mol (6920.8887 without restraints) Performing minimization step: 1765. Total energy = 6925.4112 kcal/mol (6916.3237 without restraints) Performing minimization step: 1766. Total energy = 6920.8483 kcal/mol (6911.7642 without restraints) Performing minimization step: 1767. Total energy = 6916.2906 kcal/mol (6907.2098 without restraints) Performing minimization step: 1768. Total energy = 6911.7383 kcal/mol (6902.6608 without restraints) Performing minimization step: 1769. Total energy = 6907.1907 kcal/mol (6898.1165 without restraints) Performing minimization step: 1770. Total energy = 6902.6483 kcal/mol (6893.5773 without restraints) Performing minimization step: 1771. Total energy = 6898.1110 kcal/mol (6889.0433 without restraints) Performing minimization step: 1772. Total energy = 6893.5786 kcal/mol (6884.5143 without restraints) Performing minimization step: 1773. Total energy = 6889.0516 kcal/mol (6879.9906 without restraints) Performing minimization step: 1774. Total energy = 6884.5300 kcal/mol (6875.4722 without restraints) Performing minimization step: 1775. Total energy = 6880.0131 kcal/mol (6870.9586 without restraints) Performing minimization step: 1776. Total energy = 6875.5014 kcal/mol (6866.4503 without restraints) Performing minimization step: 1777. Total energy = 6870.9944 kcal/mol (6861.9465 without restraints) Performing minimization step: 1778. Total energy = 6866.4925 kcal/mol (6857.4479 without restraints) Performing minimization step: 1779. Total energy = 6861.9956 kcal/mol (6852.9544 without restraints) Performing minimization step: 1780. Total energy = 6857.5041 kcal/mol (6848.4661 without restraints) Performing minimization step: 1781. Total energy = 6853.0174 kcal/mol (6843.9825 without restraints) Performing minimization step: 1782. Total energy = 6848.5356 kcal/mol (6839.5042 without restraints) Performing minimization step: 1783. Total energy = 6844.0588 kcal/mol (6835.0306 without restraints) Performing minimization step: 1784. Total energy = 6839.5874 kcal/mol (6830.5624 without restraints) Performing minimization step: 1785. Total energy = 6835.1207 kcal/mol (6826.0991 without restraints) Performing minimization step: 1786. Total energy = 6830.6590 kcal/mol (6821.6407 without restraints) Performing minimization step: 1787. Total energy = 6826.2026 kcal/mol (6817.1875 without restraints) Performing minimization step: 1788. Total energy = 6821.7509 kcal/mol (6812.7391 without restraints) Performing minimization step: 1789. Total energy = 6817.3044 kcal/mol (6808.2959 without restraints) Performing minimization step: 1790. Total energy = 6812.8629 kcal/mol (6803.8576 without restraints) Performing minimization step: 1791. Total energy = 6808.4262 kcal/mol (6799.4242 without restraints) Performing minimization step: 1792. Total energy = 6803.9943 kcal/mol (6794.9956 without restraints) Performing minimization step: 1793. Total energy = 6799.5675 kcal/mol (6790.5720 without restraints) Performing minimization step: 1794. Total energy = 6795.1457 kcal/mol (6786.1535 without restraints) Performing minimization step: 1795. Total energy = 6790.7289 kcal/mol (6781.7400 without restraints) Performing minimization step: 1796. Total energy = 6786.3167 kcal/mol (6777.3310 without restraints) Performing minimization step: 1797. Total energy = 6781.9093 kcal/mol (6772.9268 without restraints) Performing minimization step: 1798. Total energy = 6777.5068 kcal/mol (6768.5276 without restraints) Performing minimization step: 1799. Total energy = 6773.1093 kcal/mol (6764.1334 without restraints) Performing minimization step: 1800. Total energy = 6768.7166 kcal/mol (6759.7439 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 6764.3286 kcal/mol (6755.3592 without restraints) Performing minimization step: 1802. Total energy = 6759.9458 kcal/mol (6750.9796 without restraints) Performing minimization step: 1803. Total energy = 6755.5675 kcal/mol (6746.6046 without restraints) Performing minimization step: 1804. Total energy = 6751.1941 kcal/mol (6742.2344 without restraints) Performing minimization step: 1805. Total energy = 6746.8254 kcal/mol (6737.8690 without restraints) Performing minimization step: 1806. Total energy = 6742.4616 kcal/mol (6733.5084 without restraints) Performing minimization step: 1807. Total energy = 6738.1030 kcal/mol (6729.1530 without restraints) Performing minimization step: 1808. Total energy = 6733.7489 kcal/mol (6724.8021 without restraints) Performing minimization step: 1809. Total energy = 6729.3993 kcal/mol (6720.4558 without restraints) Performing minimization step: 1810. Total energy = 6725.0546 kcal/mol (6716.1144 without restraints) Performing minimization step: 1811. Total energy = 6720.7148 kcal/mol (6711.7779 without restraints) Performing minimization step: 1812. Total energy = 6716.3799 kcal/mol (6707.4462 without restraints) Performing minimization step: 1813. Total energy = 6712.0495 kcal/mol (6703.1190 without restraints) Performing minimization step: 1814. Total energy = 6707.7237 kcal/mol (6698.7964 without restraints) Performing minimization step: 1815. Total energy = 6703.4030 kcal/mol (6694.4790 without restraints) Performing minimization step: 1816. Total energy = 6699.0867 kcal/mol (6690.1658 without restraints) Performing minimization step: 1817. Total energy = 6694.7752 kcal/mol (6685.8578 without restraints) Performing minimization step: 1818. Total energy = 6690.4685 kcal/mol (6681.5542 without restraints) Performing minimization step: 1819. Total energy = 6686.1664 kcal/mol (6677.2553 without restraints) Performing minimization step: 1820. Total energy = 6681.8694 kcal/mol (6672.9616 without restraints) Performing minimization step: 1821. Total energy = 6677.5773 kcal/mol (6668.6726 without restraints) Performing minimization step: 1822. Total energy = 6673.2892 kcal/mol (6664.3878 without restraints) Performing minimization step: 1823. Total energy = 6669.0059 kcal/mol (6660.1077 without restraints) Performing minimization step: 1824. Total energy = 6664.7272 kcal/mol (6655.8322 without restraints) Performing minimization step: 1825. Total energy = 6660.4530 kcal/mol (6651.5612 without restraints) Performing minimization step: 1826. Total energy = 6656.1835 kcal/mol (6647.2950 without restraints) Performing minimization step: 1827. Total energy = 6651.9183 kcal/mol (6643.0330 without restraints) Performing minimization step: 1828. Total energy = 6647.6583 kcal/mol (6638.7761 without restraints) Performing minimization step: 1829. Total energy = 6643.4028 kcal/mol (6634.5240 without restraints) Performing minimization step: 1830. Total energy = 6639.1516 kcal/mol (6630.2759 without restraints) Performing minimization step: 1831. Total energy = 6634.9052 kcal/mol (6626.0327 without restraints) Performing minimization step: 1832. Total energy = 6630.6635 kcal/mol (6621.7942 without restraints) Performing minimization step: 1833. Total energy = 6626.4262 kcal/mol (6617.5601 without restraints) Performing minimization step: 1834. Total energy = 6622.1939 kcal/mol (6613.3311 without restraints) Performing minimization step: 1835. Total energy = 6617.9662 kcal/mol (6609.1066 without restraints) Performing minimization step: 1836. Total energy = 6613.7426 kcal/mol (6604.8861 without restraints) Performing minimization step: 1837. Total energy = 6609.5238 kcal/mol (6600.6707 without restraints) Performing minimization step: 1838. Total energy = 6605.3096 kcal/mol (6596.4596 without restraints) Performing minimization step: 1839. Total energy = 6601.0999 kcal/mol (6592.2531 without restraints) Performing minimization step: 1840. Total energy = 6596.8949 kcal/mol (6588.0514 without restraints) Performing minimization step: 1841. Total energy = 6592.6943 kcal/mol (6583.8539 without restraints) Performing minimization step: 1842. Total energy = 6588.4981 kcal/mol (6579.6608 without restraints) Performing minimization step: 1843. Total energy = 6584.3064 kcal/mol (6575.4723 without restraints) Performing minimization step: 1844. Total energy = 6580.1194 kcal/mol (6571.2885 without restraints) Performing minimization step: 1845. Total energy = 6575.9369 kcal/mol (6567.1094 without restraints) Performing minimization step: 1846. Total energy = 6571.7589 kcal/mol (6562.9345 without restraints) Performing minimization step: 1847. Total energy = 6567.5855 kcal/mol (6558.7642 without restraints) Performing minimization step: 1848. Total energy = 6563.4162 kcal/mol (6554.5981 without restraints) Performing minimization step: 1849. Total energy = 6559.2513 kcal/mol (6550.4364 without restraints) Performing minimization step: 1850. Total energy = 6555.0912 kcal/mol (6546.2796 without restraints) Performing minimization step: 1851. Total energy = 6550.9354 kcal/mol (6542.1268 without restraints) Performing minimization step: 1852. Total energy = 6546.7838 kcal/mol (6537.9785 without restraints) Performing minimization step: 1853. Total energy = 6542.6365 kcal/mol (6533.8343 without restraints) Performing minimization step: 1854. Total energy = 6538.4940 kcal/mol (6529.6950 without restraints) Performing minimization step: 1855. Total energy = 6534.3558 kcal/mol (6525.5600 without restraints) Performing minimization step: 1856. Total energy = 6530.2221 kcal/mol (6521.4296 without restraints) Performing minimization step: 1857. Total energy = 6526.0926 kcal/mol (6517.3032 without restraints) Performing minimization step: 1858. Total energy = 6521.9677 kcal/mol (6513.1814 without restraints) Performing minimization step: 1859. Total energy = 6517.8470 kcal/mol (6509.0638 without restraints) Performing minimization step: 1860. Total energy = 6513.7306 kcal/mol (6504.9507 without restraints) Performing minimization step: 1861. Total energy = 6509.6187 kcal/mol (6500.8419 without restraints) Performing minimization step: 1862. Total energy = 6505.5110 kcal/mol (6496.7374 without restraints) Performing minimization step: 1863. Total energy = 6501.4080 kcal/mol (6492.6376 without restraints) Performing minimization step: 1864. Total energy = 6497.3091 kcal/mol (6488.5418 without restraints) Performing minimization step: 1865. Total energy = 6493.2145 kcal/mol (6484.4504 without restraints) Performing minimization step: 1866. Total energy = 6489.1245 kcal/mol (6480.3636 without restraints) Performing minimization step: 1867. Total energy = 6485.0389 kcal/mol (6476.2812 without restraints) Performing minimization step: 1868. Total energy = 6480.9576 kcal/mol (6472.2032 without restraints) Performing minimization step: 1869. Total energy = 6476.8805 kcal/mol (6468.1291 without restraints) Performing minimization step: 1870. Total energy = 6472.8076 kcal/mol (6464.0591 without restraints) Performing minimization step: 1871. Total energy = 6468.7389 kcal/mol (6459.9938 without restraints) Performing minimization step: 1872. Total energy = 6464.6744 kcal/mol (6455.9324 without restraints) Performing minimization step: 1873. Total energy = 6460.6142 kcal/mol (6451.8754 without restraints) Performing minimization step: 1874. Total energy = 6456.5584 kcal/mol (6447.8228 without restraints) Performing minimization step: 1875. Total energy = 6452.5068 kcal/mol (6443.7743 without restraints) Performing minimization step: 1876. Total energy = 6448.4599 kcal/mol (6439.7304 without restraints) Performing minimization step: 1877. Total energy = 6444.4167 kcal/mol (6435.6905 without restraints) Performing minimization step: 1878. Total energy = 6440.3781 kcal/mol (6431.6551 without restraints) Performing minimization step: 1879. Total energy = 6436.3435 kcal/mol (6427.6236 without restraints) Performing minimization step: 1880. Total energy = 6432.3132 kcal/mol (6423.5964 without restraints) Performing minimization step: 1881. Total energy = 6428.2874 kcal/mol (6419.5739 without restraints) Performing minimization step: 1882. Total energy = 6424.2655 kcal/mol (6415.5551 without restraints) Performing minimization step: 1883. Total energy = 6420.2477 kcal/mol (6411.5401 without restraints) Performing minimization step: 1884. Total energy = 6416.2339 kcal/mol (6407.5297 without restraints) Performing minimization step: 1885. Total energy = 6412.2246 kcal/mol (6403.5236 without restraints) Performing minimization step: 1886. Total energy = 6408.2194 kcal/mol (6399.5215 without restraints) Performing minimization step: 1887. Total energy = 6404.2185 kcal/mol (6395.5238 without restraints) Performing minimization step: 1888. Total energy = 6400.2217 kcal/mol (6391.5301 without restraints) Performing minimization step: 1889. Total energy = 6396.2291 kcal/mol (6387.5406 without restraints) Performing minimization step: 1890. Total energy = 6392.2406 kcal/mol (6383.5553 without restraints) Performing minimization step: 1891. Total energy = 6388.2563 kcal/mol (6379.5741 without restraints) Performing minimization step: 1892. Total energy = 6384.2760 kcal/mol (6375.5967 without restraints) Performing minimization step: 1893. Total energy = 6380.3000 kcal/mol (6371.6241 without restraints) Performing minimization step: 1894. Total energy = 6376.3282 kcal/mol (6367.6555 without restraints) Performing minimization step: 1895. Total energy = 6372.3614 kcal/mol (6363.6918 without restraints) Performing minimization step: 1896. Total energy = 6368.3976 kcal/mol (6359.7311 without restraints) Performing minimization step: 1897. Total energy = 6364.4378 kcal/mol (6355.7743 without restraints) Performing minimization step: 1898. Total energy = 6360.4827 kcal/mol (6351.8224 without restraints) Performing minimization step: 1899. Total energy = 6356.5315 kcal/mol (6347.8744 without restraints) Performing minimization step: 1900. Total energy = 6352.5842 kcal/mol (6343.9302 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 6348.6413 kcal/mol (6339.9905 without restraints) Performing minimization step: 1902. Total energy = 6344.7023 kcal/mol (6336.0547 without restraints) Performing minimization step: 1903. Total energy = 6340.7678 kcal/mol (6332.1231 without restraints) Performing minimization step: 1904. Total energy = 6336.8372 kcal/mol (6328.1957 without restraints) Performing minimization step: 1905. Total energy = 6332.9099 kcal/mol (6324.2716 without restraints) Performing minimization step: 1906. Total energy = 6328.9870 kcal/mol (6320.3517 without restraints) Performing minimization step: 1907. Total energy = 6325.0682 kcal/mol (6316.4362 without restraints) Performing minimization step: 1908. Total energy = 6321.1536 kcal/mol (6312.5246 without restraints) Performing minimization step: 1909. Total energy = 6317.2429 kcal/mol (6308.6170 without restraints) Performing minimization step: 1910. Total energy = 6313.3361 kcal/mol (6304.7134 without restraints) Performing minimization step: 1911. Total energy = 6309.4330 kcal/mol (6300.8134 without restraints) Performing minimization step: 1912. Total energy = 6305.5345 kcal/mol (6296.9180 without restraints) Performing minimization step: 1913. Total energy = 6301.6397 kcal/mol (6293.0261 without restraints) Performing minimization step: 1914. Total energy = 6297.7492 kcal/mol (6289.1388 without restraints) Performing minimization step: 1915. Total energy = 6293.8623 kcal/mol (6285.2551 without restraints) Performing minimization step: 1916. Total energy = 6289.9795 kcal/mol (6281.3753 without restraints) Performing minimization step: 1917. Total energy = 6286.1012 kcal/mol (6277.5001 without restraints) Performing minimization step: 1918. Total energy = 6282.2261 kcal/mol (6273.6282 without restraints) Performing minimization step: 1919. Total energy = 6278.3553 kcal/mol (6269.7605 without restraints) Performing minimization step: 1920. Total energy = 6274.4885 kcal/mol (6265.8968 without restraints) Performing minimization step: 1921. Total energy = 6270.6256 kcal/mol (6262.0370 without restraints) Performing minimization step: 1922. Total energy = 6266.7662 kcal/mol (6258.1807 without restraints) Performing minimization step: 1923. Total energy = 6262.9109 kcal/mol (6254.3285 without restraints) Performing minimization step: 1924. Total energy = 6259.0594 kcal/mol (6250.4801 without restraints) Performing minimization step: 1925. Total energy = 6255.2118 kcal/mol (6246.6354 without restraints) Performing minimization step: 1926. Total energy = 6251.3684 kcal/mol (6242.7953 without restraints) Performing minimization step: 1927. Total energy = 6247.5286 kcal/mol (6238.9584 without restraints) Performing minimization step: 1928. Total energy = 6243.6926 kcal/mol (6235.1257 without restraints) Performing minimization step: 1929. Total energy = 6239.8611 kcal/mol (6231.2973 without restraints) Performing minimization step: 1930. Total energy = 6236.0334 kcal/mol (6227.4727 without restraints) Performing minimization step: 1931. Total energy = 6232.2094 kcal/mol (6223.6518 without restraints) Performing minimization step: 1932. Total energy = 6228.3893 kcal/mol (6219.8347 without restraints) Performing minimization step: 1933. Total energy = 6224.5729 kcal/mol (6216.0215 without restraints) Performing minimization step: 1934. Total energy = 6220.7605 kcal/mol (6212.2121 without restraints) Performing minimization step: 1935. Total energy = 6216.9521 kcal/mol (6208.4068 without restraints) Performing minimization step: 1936. Total energy = 6213.1474 kcal/mol (6204.6052 without restraints) Performing minimization step: 1937. Total energy = 6209.3462 kcal/mol (6200.8071 without restraints) Performing minimization step: 1938. Total energy = 6205.5491 kcal/mol (6197.0131 without restraints) Performing minimization step: 1939. Total energy = 6201.7562 kcal/mol (6193.2232 without restraints) Performing minimization step: 1940. Total energy = 6197.9672 kcal/mol (6189.4374 without restraints) Performing minimization step: 1941. Total energy = 6194.1815 kcal/mol (6185.6546 without restraints) Performing minimization step: 1942. Total energy = 6190.3998 kcal/mol (6181.8761 without restraints) Performing minimization step: 1943. Total energy = 6186.6219 kcal/mol (6178.1012 without restraints) Performing minimization step: 1944. Total energy = 6182.8478 kcal/mol (6174.3302 without restraints) Performing minimization step: 1945. Total energy = 6179.0774 kcal/mol (6170.5629 without restraints) Performing minimization step: 1946. Total energy = 6175.3108 kcal/mol (6166.7994 without restraints) Performing minimization step: 1947. Total energy = 6171.5481 kcal/mol (6163.0398 without restraints) Performing minimization step: 1948. Total energy = 6167.7891 kcal/mol (6159.2838 without restraints) Performing minimization step: 1949. Total energy = 6164.0338 kcal/mol (6155.5316 without restraints) Performing minimization step: 1950. Total energy = 6160.2822 kcal/mol (6151.7831 without restraints) Performing minimization step: 1951. Total energy = 6156.5344 kcal/mol (6148.0384 without restraints) Performing minimization step: 1952. Total energy = 6152.7904 kcal/mol (6144.2975 without restraints) Performing minimization step: 1953. Total energy = 6149.0507 kcal/mol (6140.5609 without restraints) Performing minimization step: 1954. Total energy = 6145.3136 kcal/mol (6136.8268 without restraints) Performing minimization step: 1955. Total energy = 6141.5809 kcal/mol (6133.0973 without restraints) Performing minimization step: 1956. Total energy = 6137.8525 kcal/mol (6129.3719 without restraints) Performing minimization step: 1957. Total energy = 6134.1274 kcal/mol (6125.6498 without restraints) Performing minimization step: 1958. Total energy = 6130.4053 kcal/mol (6121.9307 without restraints) Performing minimization step: 1959. Total energy = 6126.6872 kcal/mol (6118.2156 without restraints) Performing minimization step: 1960. Total energy = 6122.9728 kcal/mol (6114.5044 without restraints) Performing minimization step: 1961. Total energy = 6119.2626 kcal/mol (6110.7972 without restraints) Performing minimization step: 1962. Total energy = 6115.5562 kcal/mol (6107.0940 without restraints) Performing minimization step: 1963. Total energy = 6111.8531 kcal/mol (6103.3938 without restraints) Performing minimization step: 1964. Total energy = 6108.1537 kcal/mol (6099.6974 without restraints) Performing minimization step: 1965. Total energy = 6104.4578 kcal/mol (6096.0046 without restraints) Performing minimization step: 1966. Total energy = 6100.7655 kcal/mol (6092.3154 without restraints) Performing minimization step: 1967. Total energy = 6097.0768 kcal/mol (6088.6298 without restraints) Performing minimization step: 1968. Total energy = 6093.3918 kcal/mol (6084.9479 without restraints) Performing minimization step: 1969. Total energy = 6089.7104 kcal/mol (6081.2692 without restraints) Performing minimization step: 1970. Total energy = 6086.0323 kcal/mol (6077.5945 without restraints) Performing minimization step: 1971. Total energy = 6082.3583 kcal/mol (6073.9235 without restraints) Performing minimization step: 1972. Total energy = 6078.6879 kcal/mol (6070.2561 without restraints) Performing minimization step: 1973. Total energy = 6075.0210 kcal/mol (6066.5922 without restraints) Performing minimization step: 1974. Total energy = 6071.3579 kcal/mol (6062.9322 without restraints) Performing minimization step: 1975. Total energy = 6067.6984 kcal/mol (6059.2757 without restraints) Performing minimization step: 1976. Total energy = 6064.0426 kcal/mol (6055.6230 without restraints) Performing minimization step: 1977. Total energy = 6060.3898 kcal/mol (6051.9732 without restraints) Performing minimization step: 1978. Total energy = 6056.7408 kcal/mol (6048.3272 without restraints) Performing minimization step: 1979. Total energy = 6053.0951 kcal/mol (6044.6846 without restraints) Performing minimization step: 1980. Total energy = 6049.4534 kcal/mol (6041.0460 without restraints) Performing minimization step: 1981. Total energy = 6045.8159 kcal/mol (6037.4116 without restraints) Performing minimization step: 1982. Total energy = 6042.1817 kcal/mol (6033.7803 without restraints) Performing minimization step: 1983. Total energy = 6038.5514 kcal/mol (6030.1533 without restraints) Performing minimization step: 1984. Total energy = 6034.9235 kcal/mol (6026.5282 without restraints) Performing minimization step: 1985. Total energy = 6031.2997 kcal/mol (6022.9074 without restraints) Performing minimization step: 1986. Total energy = 6027.6797 kcal/mol (6019.2904 without restraints) Performing minimization step: 1987. Total energy = 6024.0628 kcal/mol (6015.6766 without restraints) Performing minimization step: 1988. Total energy = 6020.4496 kcal/mol (6012.0664 without restraints) Performing minimization step: 1989. Total energy = 6016.8398 kcal/mol (6008.4597 without restraints) Performing minimization step: 1990. Total energy = 6013.2339 kcal/mol (6004.8568 without restraints) Performing minimization step: 1991. Total energy = 6009.6311 kcal/mol (6001.2569 without restraints) Performing minimization step: 1992. Total energy = 6006.0318 kcal/mol (5997.6607 without restraints) Performing minimization step: 1993. Total energy = 6002.4361 kcal/mol (5994.0679 without restraints) Performing minimization step: 1994. Total energy = 5998.8437 kcal/mol (5990.4787 without restraints) Performing minimization step: 1995. Total energy = 5995.2550 kcal/mol (5986.8931 without restraints) Performing minimization step: 1996. Total energy = 5991.6700 kcal/mol (5983.3110 without restraints) Performing minimization step: 1997. Total energy = 5988.0884 kcal/mol (5979.7325 without restraints) Performing minimization step: 1998. Total energy = 5984.5105 kcal/mol (5976.1576 without restraints) Performing minimization step: 1999. Total energy = 5980.9357 kcal/mol (5972.5858 without restraints) Performing minimization step: 2000. Total energy = 5977.3645 kcal/mol (5969.0176 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 5973.7968 kcal/mol (5965.4529 without restraints) Performing minimization step: 2002. Total energy = 5970.2325 kcal/mol (5961.8916 without restraints) Performing minimization step: 2003. Total energy = 5966.6717 kcal/mol (5958.3339 without restraints) Performing minimization step: 2004. Total energy = 5963.1141 kcal/mol (5954.7793 without restraints) Performing minimization step: 2005. Total energy = 5959.5604 kcal/mol (5951.2285 without restraints) Performing minimization step: 2006. Total energy = 5956.0098 kcal/mol (5947.6811 without restraints) Performing minimization step: 2007. Total energy = 5952.4627 kcal/mol (5944.1369 without restraints) Performing minimization step: 2008. Total energy = 5948.9188 kcal/mol (5940.5961 without restraints) Performing minimization step: 2009. Total energy = 5945.3783 kcal/mol (5937.0585 without restraints) Performing minimization step: 2010. Total energy = 5941.8413 kcal/mol (5933.5247 without restraints) Performing minimization step: 2011. Total energy = 5938.3083 kcal/mol (5929.9945 without restraints) Performing minimization step: 2012. Total energy = 5934.7778 kcal/mol (5926.4670 without restraints) Performing minimization step: 2013. Total energy = 5931.2508 kcal/mol (5922.9431 without restraints) Performing minimization step: 2014. Total energy = 5927.7274 kcal/mol (5919.4227 without restraints) Performing minimization step: 2015. Total energy = 5924.2072 kcal/mol (5915.9054 without restraints) Performing minimization step: 2016. Total energy = 5920.6906 kcal/mol (5912.3919 without restraints) Performing minimization step: 2017. Total energy = 5917.1773 kcal/mol (5908.8817 without restraints) Performing minimization step: 2018. Total energy = 5913.6673 kcal/mol (5905.3746 without restraints) Performing minimization step: 2019. Total energy = 5910.1606 kcal/mol (5901.8709 without restraints) Performing minimization step: 2020. Total energy = 5906.6567 kcal/mol (5898.3700 without restraints) Performing minimization step: 2021. Total energy = 5903.1567 kcal/mol (5894.8730 without restraints) Performing minimization step: 2022. Total energy = 5899.6599 kcal/mol (5891.3791 without restraints) Performing minimization step: 2023. Total energy = 5896.1663 kcal/mol (5887.8886 without restraints) Performing minimization step: 2024. Total energy = 5892.6764 kcal/mol (5884.4017 without restraints) Performing minimization step: 2025. Total energy = 5889.1898 kcal/mol (5880.9181 without restraints) Performing minimization step: 2026. Total energy = 5885.7065 kcal/mol (5877.4377 without restraints) Performing minimization step: 2027. Total energy = 5882.2265 kcal/mol (5873.9608 without restraints) Performing minimization step: 2028. Total energy = 5878.7496 kcal/mol (5870.4869 without restraints) Performing minimization step: 2029. Total energy = 5875.2761 kcal/mol (5867.0164 without restraints) Performing minimization step: 2030. Total energy = 5871.8057 kcal/mol (5863.5489 without restraints) Performing minimization step: 2031. Total energy = 5868.3388 kcal/mol (5860.0850 without restraints) Performing minimization step: 2032. Total energy = 5864.8751 kcal/mol (5856.6243 without restraints) Performing minimization step: 2033. Total energy = 5861.4144 kcal/mol (5853.1666 without restraints) Performing minimization step: 2034. Total energy = 5857.9577 kcal/mol (5849.7129 without restraints) Performing minimization step: 2035. Total energy = 5854.5040 kcal/mol (5846.2621 without restraints) Performing minimization step: 2036. Total energy = 5851.0537 kcal/mol (5842.8148 without restraints) Performing minimization step: 2037. Total energy = 5847.6061 kcal/mol (5839.3702 without restraints) Performing minimization step: 2038. Total energy = 5844.1622 kcal/mol (5835.9292 without restraints) Performing minimization step: 2039. Total energy = 5840.7212 kcal/mol (5832.4913 without restraints) Performing minimization step: 2040. Total energy = 5837.2837 kcal/mol (5829.0567 without restraints) Performing minimization step: 2041. Total energy = 5833.8493 kcal/mol (5825.6254 without restraints) Performing minimization step: 2042. Total energy = 5830.4183 kcal/mol (5822.1973 without restraints) Performing minimization step: 2043. Total energy = 5826.9905 kcal/mol (5818.7725 without restraints) Performing minimization step: 2044. Total energy = 5823.5663 kcal/mol (5815.3512 without restraints) Performing minimization step: 2045. Total energy = 5820.1448 kcal/mol (5811.9327 without restraints) Performing minimization step: 2046. Total energy = 5816.7263 kcal/mol (5808.5172 without restraints) Performing minimization step: 2047. Total energy = 5813.3115 kcal/mol (5805.1052 without restraints) Performing minimization step: 2048. Total energy = 5809.8996 kcal/mol (5801.6966 without restraints) Performing minimization step: 2049. Total energy = 5806.4912 kcal/mol (5798.2910 without restraints) Performing minimization step: 2050. Total energy = 5803.0858 kcal/mol (5794.8886 without restraints) Performing minimization step: 2051. Total energy = 5799.6835 kcal/mol (5791.4893 without restraints) Performing minimization step: 2052. Total energy = 5796.2844 kcal/mol (5788.0931 without restraints) Performing minimization step: 2053. Total energy = 5792.8885 kcal/mol (5784.7002 without restraints) Performing minimization step: 2054. Total energy = 5789.4957 kcal/mol (5781.3106 without restraints) Performing minimization step: 2055. Total energy = 5786.1064 kcal/mol (5777.9240 without restraints) Performing minimization step: 2056. Total energy = 5782.7199 kcal/mol (5774.5405 without restraints) Performing minimization step: 2057. Total energy = 5779.3368 kcal/mol (5771.1603 without restraints) Performing minimization step: 2058. Total energy = 5775.9563 kcal/mol (5767.7827 without restraints) Performing minimization step: 2059. Total energy = 5772.5794 kcal/mol (5764.4090 without restraints) Performing minimization step: 2060. Total energy = 5769.2058 kcal/mol (5761.0382 without restraints) Performing minimization step: 2061. Total energy = 5765.8350 kcal/mol (5757.6704 without restraints) Performing minimization step: 2062. Total energy = 5762.4679 kcal/mol (5754.3062 without restraints) Performing minimization step: 2063. Total energy = 5759.1034 kcal/mol (5750.9446 without restraints) Performing minimization step: 2064. Total energy = 5755.7419 kcal/mol (5747.5862 without restraints) Performing minimization step: 2065. Total energy = 5752.3837 kcal/mol (5744.2308 without restraints) Performing minimization step: 2066. Total energy = 5749.0282 kcal/mol (5740.8782 without restraints) Performing minimization step: 2067. Total energy = 5745.6762 kcal/mol (5737.5293 without restraints) Performing minimization step: 2068. Total energy = 5742.3271 kcal/mol (5734.1832 without restraints) Performing minimization step: 2069. Total energy = 5738.9809 kcal/mol (5730.8398 without restraints) Performing minimization step: 2070. Total energy = 5735.6383 kcal/mol (5727.5002 without restraints) Performing minimization step: 2071. Total energy = 5732.2988 kcal/mol (5724.1636 without restraints) Performing minimization step: 2072. Total energy = 5728.9622 kcal/mol (5720.8301 without restraints) Performing minimization step: 2073. Total energy = 5725.6286 kcal/mol (5717.4994 without restraints) Performing minimization step: 2074. Total energy = 5722.2981 kcal/mol (5714.1718 without restraints) Performing minimization step: 2075. Total energy = 5718.9707 kcal/mol (5710.8475 without restraints) Performing minimization step: 2076. Total energy = 5715.6465 kcal/mol (5707.5262 without restraints) Performing minimization step: 2077. Total energy = 5712.3256 kcal/mol (5704.2081 without restraints) Performing minimization step: 2078. Total energy = 5709.0072 kcal/mol (5700.8927 without restraints) Performing minimization step: 2079. Total energy = 5705.6920 kcal/mol (5697.5805 without restraints) Performing minimization step: 2080. Total energy = 5702.3800 kcal/mol (5694.2714 without restraints) Performing minimization step: 2081. Total energy = 5699.0708 kcal/mol (5690.9651 without restraints) Performing minimization step: 2082. Total energy = 5695.7646 kcal/mol (5687.6618 without restraints) Performing minimization step: 2083. Total energy = 5692.4614 kcal/mol (5684.3616 without restraints) Performing minimization step: 2084. Total energy = 5689.1614 kcal/mol (5681.0645 without restraints) Performing minimization step: 2085. Total energy = 5685.8639 kcal/mol (5677.7698 without restraints) Performing minimization step: 2086. Total energy = 5682.5697 kcal/mol (5674.4787 without restraints) Performing minimization step: 2087. Total energy = 5679.2788 kcal/mol (5671.1907 without restraints) Performing minimization step: 2088. Total energy = 5675.9908 kcal/mol (5667.9059 without restraints) Performing minimization step: 2089. Total energy = 5672.7060 kcal/mol (5664.6238 without restraints) Performing minimization step: 2090. Total energy = 5669.4237 kcal/mol (5661.3444 without restraints) Performing minimization step: 2091. Total energy = 5666.1446 kcal/mol (5658.0683 without restraints) Performing minimization step: 2092. Total energy = 5662.8683 kcal/mol (5654.7949 without restraints) Performing minimization step: 2093. Total energy = 5659.5949 kcal/mol (5651.5244 without restraints) Performing minimization step: 2094. Total energy = 5656.3248 kcal/mol (5648.2572 without restraints) Performing minimization step: 2095. Total energy = 5653.0576 kcal/mol (5644.9930 without restraints) Performing minimization step: 2096. Total energy = 5649.7932 kcal/mol (5641.7315 without restraints) Performing minimization step: 2097. Total energy = 5646.5317 kcal/mol (5638.4729 without restraints) Performing minimization step: 2098. Total energy = 5643.2733 kcal/mol (5635.2174 without restraints) Performing minimization step: 2099. Total energy = 5640.0180 kcal/mol (5631.9650 without restraints) Performing minimization step: 2100. Total energy = 5636.7655 kcal/mol (5628.7154 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 5633.5158 kcal/mol (5625.4686 without restraints) Performing minimization step: 2102. Total energy = 5630.2690 kcal/mol (5622.2247 without restraints) Performing minimization step: 2103. Total energy = 5627.0248 kcal/mol (5618.9835 without restraints) Performing minimization step: 2104. Total energy = 5623.7840 kcal/mol (5615.7457 without restraints) Performing minimization step: 2105. Total energy = 5620.5460 kcal/mol (5612.5105 without restraints) Performing minimization step: 2106. Total energy = 5617.3108 kcal/mol (5609.2782 without restraints) Performing minimization step: 2107. Total energy = 5614.0787 kcal/mol (5606.0491 without restraints) Performing minimization step: 2108. Total energy = 5610.8496 kcal/mol (5602.8228 without restraints) Performing minimization step: 2109. Total energy = 5607.6235 kcal/mol (5599.5997 without restraints) Performing minimization step: 2110. Total energy = 5604.4000 kcal/mol (5596.3790 without restraints) Performing minimization step: 2111. Total energy = 5601.1793 kcal/mol (5593.1612 without restraints) Performing minimization step: 2112. Total energy = 5597.9616 kcal/mol (5589.9465 without restraints) Performing minimization step: 2113. Total energy = 5594.7467 kcal/mol (5586.7345 without restraints) Performing minimization step: 2114. Total energy = 5591.5346 kcal/mol (5583.5253 without restraints) Performing minimization step: 2115. Total energy = 5588.3253 kcal/mol (5580.3189 without restraints) Performing minimization step: 2116. Total energy = 5585.1192 kcal/mol (5577.1157 without restraints) Performing minimization step: 2117. Total energy = 5581.9158 kcal/mol (5573.9151 without restraints) Performing minimization step: 2118. Total energy = 5578.7152 kcal/mol (5570.7175 without restraints) Performing minimization step: 2119. Total energy = 5575.5174 kcal/mol (5567.5226 without restraints) Performing minimization step: 2120. Total energy = 5572.3227 kcal/mol (5564.3309 without restraints) Performing minimization step: 2121. Total energy = 5569.1308 kcal/mol (5561.1417 without restraints) Performing minimization step: 2122. Total energy = 5565.9415 kcal/mol (5557.9555 without restraints) Performing minimization step: 2123. Total energy = 5562.7550 kcal/mol (5554.7717 without restraints) Performing minimization step: 2124. Total energy = 5559.5714 kcal/mol (5551.5910 without restraints) Performing minimization step: 2125. Total energy = 5556.3909 kcal/mol (5548.4135 without restraints) Performing minimization step: 2126. Total energy = 5553.2129 kcal/mol (5545.2384 without restraints) Performing minimization step: 2127. Total energy = 5550.0385 kcal/mol (5542.0669 without restraints) Performing minimization step: 2128. Total energy = 5546.8665 kcal/mol (5538.8978 without restraints) Performing minimization step: 2129. Total energy = 5543.6975 kcal/mol (5535.7318 without restraints) Performing minimization step: 2130. Total energy = 5540.5309 kcal/mol (5532.5679 without restraints) Performing minimization step: 2131. Total energy = 5537.3675 kcal/mol (5529.4074 without restraints) Performing minimization step: 2132. Total energy = 5534.2063 kcal/mol (5526.2491 without restraints) Performing minimization step: 2133. Total energy = 5531.0483 kcal/mol (5523.0940 without restraints) Performing minimization step: 2134. Total energy = 5527.8928 kcal/mol (5519.9413 without restraints) Performing minimization step: 2135. Total energy = 5524.7399 kcal/mol (5516.7913 without restraints) Performing minimization step: 2136. Total energy = 5521.5900 kcal/mol (5513.6444 without restraints) Performing minimization step: 2137. Total energy = 5518.4431 kcal/mol (5510.5002 without restraints) Performing minimization step: 2138. Total energy = 5515.2984 kcal/mol (5507.3584 without restraints) Performing minimization step: 2139. Total energy = 5512.1570 kcal/mol (5504.2200 without restraints) Performing minimization step: 2140. Total energy = 5509.0182 kcal/mol (5501.0840 without restraints) Performing minimization step: 2141. Total energy = 5505.8814 kcal/mol (5497.9501 without restraints) Performing minimization step: 2142. Total energy = 5502.7473 kcal/mol (5494.8187 without restraints) Performing minimization step: 2143. Total energy = 5499.6164 kcal/mol (5491.6908 without restraints) Performing minimization step: 2144. Total energy = 5496.4889 kcal/mol (5488.5663 without restraints) Performing minimization step: 2145. Total energy = 5493.3635 kcal/mol (5485.4437 without restraints) Performing minimization step: 2146. Total energy = 5490.2410 kcal/mol (5482.3241 without restraints) Performing minimization step: 2147. Total energy = 5487.1209 kcal/mol (5479.2068 without restraints) Performing minimization step: 2148. Total energy = 5484.0036 kcal/mol (5476.0924 without restraints) Performing minimization step: 2149. Total energy = 5480.8894 kcal/mol (5472.9811 without restraints) Performing minimization step: 2150. Total energy = 5477.7776 kcal/mol (5469.8722 without restraints) Performing minimization step: 2151. Total energy = 5474.6686 kcal/mol (5466.7660 without restraints) Performing minimization step: 2152. Total energy = 5471.5622 kcal/mol (5463.6625 without restraints) Performing minimization step: 2153. Total energy = 5468.4585 kcal/mol (5460.5616 without restraints) Performing minimization step: 2154. Total energy = 5465.3573 kcal/mol (5457.4633 without restraints) Performing minimization step: 2155. Total energy = 5462.2592 kcal/mol (5454.3681 without restraints) Performing minimization step: 2156. Total energy = 5459.1637 kcal/mol (5451.2754 without restraints) Performing minimization step: 2157. Total energy = 5456.0712 kcal/mol (5448.1858 without restraints) Performing minimization step: 2158. Total energy = 5452.9808 kcal/mol (5445.0982 without restraints) Performing minimization step: 2159. Total energy = 5449.8929 kcal/mol (5442.0132 without restraints) Performing minimization step: 2160. Total energy = 5446.8079 kcal/mol (5438.9310 without restraints) Performing minimization step: 2161. Total energy = 5443.7258 kcal/mol (5435.8518 without restraints) Performing minimization step: 2162. Total energy = 5440.6462 kcal/mol (5432.7750 without restraints) Performing minimization step: 2163. Total energy = 5437.5692 kcal/mol (5429.7009 without restraints) Performing minimization step: 2164. Total energy = 5434.4957 kcal/mol (5426.6302 without restraints) Performing minimization step: 2165. Total energy = 5431.4242 kcal/mol (5423.5616 without restraints) Performing minimization step: 2166. Total energy = 5428.3551 kcal/mol (5420.4954 without restraints) Performing minimization step: 2167. Total energy = 5425.2887 kcal/mol (5417.4319 without restraints) Performing minimization step: 2168. Total energy = 5422.2249 kcal/mol (5414.3709 without restraints) Performing minimization step: 2169. Total energy = 5419.1640 kcal/mol (5411.3129 without restraints) Performing minimization step: 2170. Total energy = 5416.1056 kcal/mol (5408.2572 without restraints) Performing minimization step: 2171. Total energy = 5413.0497 kcal/mol (5405.2042 without restraints) Performing minimization step: 2172. Total energy = 5409.9964 kcal/mol (5402.1538 without restraints) Performing minimization step: 2173. Total energy = 5406.9458 kcal/mol (5399.1060 without restraints) Performing minimization step: 2174. Total energy = 5403.8981 kcal/mol (5396.0613 without restraints) Performing minimization step: 2175. Total energy = 5400.8527 kcal/mol (5393.0185 without restraints) Performing minimization step: 2176. Total energy = 5397.8099 kcal/mol (5389.9786 without restraints) Performing minimization step: 2177. Total energy = 5394.7701 kcal/mol (5386.9417 without restraints) Performing minimization step: 2178. Total energy = 5391.7327 kcal/mol (5383.9071 without restraints) Performing minimization step: 2179. Total energy = 5388.6979 kcal/mol (5380.8751 without restraints) Performing minimization step: 2180. Total energy = 5385.6655 kcal/mol (5377.8457 without restraints) Performing minimization step: 2181. Total energy = 5382.6356 kcal/mol (5374.8185 without restraints) Performing minimization step: 2182. Total energy = 5379.6083 kcal/mol (5371.7940 without restraints) Performing minimization step: 2183. Total energy = 5376.5834 kcal/mol (5368.7721 without restraints) Performing minimization step: 2184. Total energy = 5373.5614 kcal/mol (5365.7529 without restraints) Performing minimization step: 2185. Total energy = 5370.5419 kcal/mol (5362.7361 without restraints) Performing minimization step: 2186. Total energy = 5367.5251 kcal/mol (5359.7222 without restraints) Performing minimization step: 2187. Total energy = 5364.5106 kcal/mol (5356.7105 without restraints) Performing minimization step: 2188. Total energy = 5361.4988 kcal/mol (5353.7015 without restraints) Performing minimization step: 2189. Total energy = 5358.4895 kcal/mol (5350.6952 without restraints) Performing minimization step: 2190. Total energy = 5355.4831 kcal/mol (5347.6914 without restraints) Performing minimization step: 2191. Total energy = 5352.4787 kcal/mol (5344.6899 without restraints) Performing minimization step: 2192. Total energy = 5349.4769 kcal/mol (5341.6909 without restraints) Performing minimization step: 2193. Total energy = 5346.4776 kcal/mol (5338.6944 without restraints) Performing minimization step: 2194. Total energy = 5343.4808 kcal/mol (5335.7005 without restraints) Performing minimization step: 2195. Total energy = 5340.4869 kcal/mol (5332.7094 without restraints) Performing minimization step: 2196. Total energy = 5337.4952 kcal/mol (5329.7206 without restraints) Performing minimization step: 2197. Total energy = 5334.5060 kcal/mol (5326.7341 without restraints) Performing minimization step: 2198. Total energy = 5331.5199 kcal/mol (5323.7509 without restraints) Performing minimization step: 2199. Total energy = 5328.5362 kcal/mol (5320.7700 without restraints) Performing minimization step: 2200. Total energy = 5325.5545 kcal/mol (5317.7911 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 5322.5756 kcal/mol (5314.8150 without restraints) Performing minimization step: 2202. Total energy = 5319.5989 kcal/mol (5311.8412 without restraints) Performing minimization step: 2203. Total energy = 5316.6248 kcal/mol (5308.8698 without restraints) Performing minimization step: 2204. Total energy = 5313.6540 kcal/mol (5305.9019 without restraints) Performing minimization step: 2205. Total energy = 5310.6850 kcal/mol (5302.9358 without restraints) Performing minimization step: 2206. Total energy = 5307.7183 kcal/mol (5299.9718 without restraints) Performing minimization step: 2207. Total energy = 5304.7543 kcal/mol (5297.0106 without restraints) Performing minimization step: 2208. Total energy = 5301.7925 kcal/mol (5294.0515 without restraints) Performing minimization step: 2209. Total energy = 5298.8332 kcal/mol (5291.0951 without restraints) Performing minimization step: 2210. Total energy = 5295.8764 kcal/mol (5288.1411 without restraints) Performing minimization step: 2211. Total energy = 5292.9223 kcal/mol (5285.1899 without restraints) Performing minimization step: 2212. Total energy = 5289.9709 kcal/mol (5282.2414 without restraints) Performing minimization step: 2213. Total energy = 5287.0219 kcal/mol (5279.2951 without restraints) Performing minimization step: 2214. Total energy = 5284.0752 kcal/mol (5276.3512 without restraints) Performing minimization step: 2215. Total energy = 5281.1312 kcal/mol (5273.4099 without restraints) Performing minimization step: 2216. Total energy = 5278.1892 kcal/mol (5270.4707 without restraints) Performing minimization step: 2217. Total energy = 5275.2500 kcal/mol (5267.5343 without restraints) Performing minimization step: 2218. Total energy = 5272.3133 kcal/mol (5264.6004 without restraints) Performing minimization step: 2219. Total energy = 5269.3784 kcal/mol (5261.6683 without restraints) Performing minimization step: 2220. Total energy = 5266.4463 kcal/mol (5258.7390 without restraints) Performing minimization step: 2221. Total energy = 5263.5161 kcal/mol (5255.8115 without restraints) Performing minimization step: 2222. Total energy = 5260.5885 kcal/mol (5252.8868 without restraints) Performing minimization step: 2223. Total energy = 5257.6633 kcal/mol (5249.9643 without restraints) Performing minimization step: 2224. Total energy = 5254.7403 kcal/mol (5247.0442 without restraints) Performing minimization step: 2225. Total energy = 5251.8203 kcal/mol (5244.1270 without restraints) Performing minimization step: 2226. Total energy = 5248.9025 kcal/mol (5241.2120 without restraints) Performing minimization step: 2227. Total energy = 5245.9875 kcal/mol (5238.2998 without restraints) Performing minimization step: 2228. Total energy = 5243.0747 kcal/mol (5235.3897 without restraints) Performing minimization step: 2229. Total energy = 5240.1642 kcal/mol (5232.4819 without restraints) Performing minimization step: 2230. Total energy = 5237.2553 kcal/mol (5229.5759 without restraints) Performing minimization step: 2231. Total energy = 5234.3501 kcal/mol (5226.6735 without restraints) Performing minimization step: 2232. Total energy = 5231.4471 kcal/mol (5223.7732 without restraints) Performing minimization step: 2233. Total energy = 5228.5461 kcal/mol (5220.8750 without restraints) Performing minimization step: 2234. Total energy = 5225.6470 kcal/mol (5217.9788 without restraints) Performing minimization step: 2235. Total energy = 5222.7513 kcal/mol (5215.0858 without restraints) Performing minimization step: 2236. Total energy = 5219.8577 kcal/mol (5212.1949 without restraints) Performing minimization step: 2237. Total energy = 5216.9662 kcal/mol (5209.3062 without restraints) Performing minimization step: 2238. Total energy = 5214.0770 kcal/mol (5206.4199 without restraints) Performing minimization step: 2239. Total energy = 5211.1903 kcal/mol (5203.5360 without restraints) Performing minimization step: 2240. Total energy = 5208.3060 kcal/mol (5200.6544 without restraints) Performing minimization step: 2241. Total energy = 5205.4243 kcal/mol (5197.7754 without restraints) Performing minimization step: 2242. Total energy = 5202.5448 kcal/mol (5194.8987 without restraints) Performing minimization step: 2243. Total energy = 5199.6673 kcal/mol (5192.0240 without restraints) Performing minimization step: 2244. Total energy = 5196.7930 kcal/mol (5189.1526 without restraints) Performing minimization step: 2245. Total energy = 5193.9207 kcal/mol (5186.2831 without restraints) Performing minimization step: 2246. Total energy = 5191.0506 kcal/mol (5183.4156 without restraints) Performing minimization step: 2247. Total energy = 5188.1833 kcal/mol (5180.5513 without restraints) Performing minimization step: 2248. Total energy = 5185.3179 kcal/mol (5177.6883 without restraints) Performing minimization step: 2249. Total energy = 5182.4546 kcal/mol (5174.8279 without restraints) Performing minimization step: 2250. Total energy = 5179.5935 kcal/mol (5171.9695 without restraints) Performing minimization step: 2251. Total energy = 5176.7349 kcal/mol (5169.1137 without restraints) Performing minimization step: 2252. Total energy = 5173.8787 kcal/mol (5166.2603 without restraints) Performing minimization step: 2253. Total energy = 5171.0244 kcal/mol (5163.4088 without restraints) Performing minimization step: 2254. Total energy = 5168.1732 kcal/mol (5160.5603 without restraints) Performing minimization step: 2255. Total energy = 5165.3239 kcal/mol (5157.7138 without restraints) Performing minimization step: 2256. Total energy = 5162.4770 kcal/mol (5154.8696 without restraints) Performing minimization step: 2257. Total energy = 5159.6324 kcal/mol (5152.0278 without restraints) Performing minimization step: 2258. Total energy = 5156.7901 kcal/mol (5149.1883 without restraints) Performing minimization step: 2259. Total energy = 5153.9501 kcal/mol (5146.3509 without restraints) Performing minimization step: 2260. Total energy = 5151.1125 kcal/mol (5143.5162 without restraints) Performing minimization step: 2261. Total energy = 5148.2776 kcal/mol (5140.6840 without restraints) Performing minimization step: 2262. Total energy = 5145.4447 kcal/mol (5137.8539 without restraints) Performing minimization step: 2263. Total energy = 5142.6140 kcal/mol (5135.0259 without restraints) Performing minimization step: 2264. Total energy = 5139.7851 kcal/mol (5132.1997 without restraints) Performing minimization step: 2265. Total energy = 5136.9588 kcal/mol (5129.3761 without restraints) Performing minimization step: 2266. Total energy = 5134.1349 kcal/mol (5126.5551 without restraints) Performing minimization step: 2267. Total energy = 5131.3135 kcal/mol (5123.7364 without restraints) Performing minimization step: 2268. Total energy = 5128.4940 kcal/mol (5120.9195 without restraints) Performing minimization step: 2269. Total energy = 5125.6768 kcal/mol (5118.1052 without restraints) Performing minimization step: 2270. Total energy = 5122.8620 kcal/mol (5115.2932 without restraints) Performing minimization step: 2271. Total energy = 5120.0496 kcal/mol (5112.4835 without restraints) Performing minimization step: 2272. Total energy = 5117.2393 kcal/mol (5109.6759 without restraints) Performing minimization step: 2273. Total energy = 5114.4313 kcal/mol (5106.8707 without restraints) Performing minimization step: 2274. Total energy = 5111.6259 kcal/mol (5104.0684 without restraints) Performing minimization step: 2275. Total energy = 5108.8239 kcal/mol (5101.2687 without restraints) Performing minimization step: 2276. Total energy = 5106.0227 kcal/mol (5098.4703 without restraints) Performing minimization step: 2277. Total energy = 5103.2236 kcal/mol (5095.6738 without restraints) Performing minimization step: 2278. Total energy = 5100.4272 kcal/mol (5092.8802 without restraints) Performing minimization step: 2279. Total energy = 5097.6328 kcal/mol (5090.0887 without restraints) Performing minimization step: 2280. Total energy = 5094.8410 kcal/mol (5087.2995 without restraints) Performing minimization step: 2281. Total energy = 5092.0513 kcal/mol (5084.5128 without restraints) Performing minimization step: 2282. Total energy = 5089.2635 kcal/mol (5081.7276 without restraints) Performing minimization step: 2283. Total energy = 5086.4781 kcal/mol (5078.9448 without restraints) Performing minimization step: 2284. Total energy = 5083.6949 kcal/mol (5076.1643 without restraints) Performing minimization step: 2285. Total energy = 5080.9140 kcal/mol (5073.3862 without restraints) Performing minimization step: 2286. Total energy = 5078.1352 kcal/mol (5070.6101 without restraints) Performing minimization step: 2287. Total energy = 5075.3589 kcal/mol (5067.8365 without restraints) Performing minimization step: 2288. Total energy = 5072.5846 kcal/mol (5065.0650 without restraints) Performing minimization step: 2289. Total energy = 5069.8127 kcal/mol (5062.2961 without restraints) Performing minimization step: 2290. Total energy = 5067.0432 kcal/mol (5059.5291 without restraints) Performing minimization step: 2291. Total energy = 5064.2756 kcal/mol (5056.7641 without restraints) Performing minimization step: 2292. Total energy = 5061.5104 kcal/mol (5054.0016 without restraints) Performing minimization step: 2293. Total energy = 5058.7466 kcal/mol (5051.2404 without restraints) Performing minimization step: 2294. Total energy = 5055.9854 kcal/mol (5048.4821 without restraints) Performing minimization step: 2295. Total energy = 5053.2265 kcal/mol (5045.7260 without restraints) Performing minimization step: 2296. Total energy = 5050.4699 kcal/mol (5042.9720 without restraints) Performing minimization step: 2297. Total energy = 5047.7155 kcal/mol (5040.2203 without restraints) Performing minimization step: 2298. Total energy = 5044.9633 kcal/mol (5037.4708 without restraints) Performing minimization step: 2299. Total energy = 5042.2133 kcal/mol (5034.7236 without restraints) Performing minimization step: 2300. Total energy = 5039.4658 kcal/mol (5031.9788 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 5036.7205 kcal/mol (5029.2364 without restraints) Performing minimization step: 2302. Total energy = 5033.9772 kcal/mol (5026.4957 without restraints) Performing minimization step: 2303. Total energy = 5031.2355 kcal/mol (5023.7567 without restraints) Performing minimization step: 2304. Total energy = 5028.4965 kcal/mol (5021.0203 without restraints) Performing minimization step: 2305. Total energy = 5025.7594 kcal/mol (5018.2859 without restraints) Performing minimization step: 2306. Total energy = 5023.0247 kcal/mol (5015.5539 without restraints) Performing minimization step: 2307. Total energy = 5020.2925 kcal/mol (5012.8245 without restraints) Performing minimization step: 2308. Total energy = 5017.5626 kcal/mol (5010.0973 without restraints) Performing minimization step: 2309. Total energy = 5014.8349 kcal/mol (5007.3722 without restraints) Performing minimization step: 2310. Total energy = 5012.1097 kcal/mol (5004.6498 without restraints) Performing minimization step: 2311. Total energy = 5009.3859 kcal/mol (5001.9287 without restraints) Performing minimization step: 2312. Total energy = 5006.6643 kcal/mol (4999.2097 without restraints) Performing minimization step: 2313. Total energy = 5003.9447 kcal/mol (4996.4930 without restraints) Performing minimization step: 2314. Total energy = 5001.2275 kcal/mol (4993.7784 without restraints) Performing minimization step: 2315. Total energy = 4998.5127 kcal/mol (4991.0662 without restraints) Performing minimization step: 2316. Total energy = 4995.7996 kcal/mol (4988.3559 without restraints) Performing minimization step: 2317. Total energy = 4993.0888 kcal/mol (4985.6477 without restraints) Performing minimization step: 2318. Total energy = 4990.3801 kcal/mol (4982.9417 without restraints) Performing minimization step: 2319. Total energy = 4987.6736 kcal/mol (4980.2379 without restraints) Performing minimization step: 2320. Total energy = 4984.9692 kcal/mol (4977.5362 without restraints) Performing minimization step: 2321. Total energy = 4982.2669 kcal/mol (4974.8367 without restraints) Performing minimization step: 2322. Total energy = 4979.5675 kcal/mol (4972.1399 without restraints) Performing minimization step: 2323. Total energy = 4976.8698 kcal/mol (4969.4449 without restraints) Performing minimization step: 2324. Total energy = 4974.1740 kcal/mol (4966.7518 without restraints) Performing minimization step: 2325. Total energy = 4971.4805 kcal/mol (4964.0611 without restraints) Performing minimization step: 2326. Total energy = 4968.7892 kcal/mol (4961.3724 without restraints) Performing minimization step: 2327. Total energy = 4966.1001 kcal/mol (4958.6860 without restraints) Performing minimization step: 2328. Total energy = 4963.4128 kcal/mol (4956.0014 without restraints) Performing minimization step: 2329. Total energy = 4960.7280 kcal/mol (4953.3192 without restraints) Performing minimization step: 2330. Total energy = 4958.0447 kcal/mol (4950.6386 without restraints) Performing minimization step: 2331. Total energy = 4955.3640 kcal/mol (4947.9606 without restraints) Performing minimization step: 2332. Total energy = 4952.6853 kcal/mol (4945.2846 without restraints) Performing minimization step: 2333. Total energy = 4950.0086 kcal/mol (4942.6106 without restraints) Performing minimization step: 2334. Total energy = 4947.3342 kcal/mol (4939.9390 without restraints) Performing minimization step: 2335. Total energy = 4944.6622 kcal/mol (4937.2695 without restraints) Performing minimization step: 2336. Total energy = 4941.9923 kcal/mol (4934.6023 without restraints) Performing minimization step: 2337. Total energy = 4939.3240 kcal/mol (4931.9367 without restraints) Performing minimization step: 2338. Total energy = 4936.6578 kcal/mol (4929.2731 without restraints) Performing minimization step: 2339. Total energy = 4933.9940 kcal/mol (4926.6121 without restraints) Performing minimization step: 2340. Total energy = 4931.3321 kcal/mol (4923.9529 without restraints) Performing minimization step: 2341. Total energy = 4928.6723 kcal/mol (4921.2957 without restraints) Performing minimization step: 2342. Total energy = 4926.0149 kcal/mol (4918.6411 without restraints) Performing minimization step: 2343. Total energy = 4923.3597 kcal/mol (4915.9885 without restraints) Performing minimization step: 2344. Total energy = 4920.7064 kcal/mol (4913.3377 without restraints) Performing minimization step: 2345. Total energy = 4918.0550 kcal/mol (4910.6891 without restraints) Performing minimization step: 2346. Total energy = 4915.4060 kcal/mol (4908.0427 without restraints) Performing minimization step: 2347. Total energy = 4912.7584 kcal/mol (4905.3978 without restraints) Performing minimization step: 2348. Total energy = 4910.1140 kcal/mol (4902.7560 without restraints) Performing minimization step: 2349. Total energy = 4907.4715 kcal/mol (4900.1162 without restraints) Performing minimization step: 2350. Total energy = 4904.8306 kcal/mol (4897.4780 without restraints) Performing minimization step: 2351. Total energy = 4902.1918 kcal/mol (4894.8418 without restraints) Performing minimization step: 2352. Total energy = 4899.5551 kcal/mol (4892.2079 without restraints) Performing minimization step: 2353. Total energy = 4896.9207 kcal/mol (4889.5762 without restraints) Performing minimization step: 2354. Total energy = 4894.2887 kcal/mol (4886.9468 without restraints) Performing minimization step: 2355. Total energy = 4891.6586 kcal/mol (4884.3194 without restraints) Performing minimization step: 2356. Total energy = 4889.0304 kcal/mol (4881.6938 without restraints) Performing minimization step: 2357. Total energy = 4886.4046 kcal/mol (4879.0706 without restraints) Performing minimization step: 2358. Total energy = 4883.7809 kcal/mol (4876.4495 without restraints) Performing minimization step: 2359. Total energy = 4881.1591 kcal/mol (4873.8304 without restraints) Performing minimization step: 2360. Total energy = 4878.5394 kcal/mol (4871.2135 without restraints) Performing minimization step: 2361. Total energy = 4875.9215 kcal/mol (4868.5983 without restraints) Performing minimization step: 2362. Total energy = 4873.3061 kcal/mol (4865.9855 without restraints) Performing minimization step: 2363. Total energy = 4870.6923 kcal/mol (4863.3743 without restraints) Performing minimization step: 2364. Total energy = 4868.0805 kcal/mol (4860.7651 without restraints) Performing minimization step: 2365. Total energy = 4865.4712 kcal/mol (4858.1585 without restraints) Performing minimization step: 2366. Total energy = 4862.8638 kcal/mol (4855.5537 without restraints) Performing minimization step: 2367. Total energy = 4860.2582 kcal/mol (4852.9508 without restraints) Performing minimization step: 2368. Total energy = 4857.6552 kcal/mol (4850.3505 without restraints) Performing minimization step: 2369. Total energy = 4855.0540 kcal/mol (4847.7518 without restraints) Performing minimization step: 2370. Total energy = 4852.4547 kcal/mol (4845.1553 without restraints) Performing minimization step: 2371. Total energy = 4849.8569 kcal/mol (4842.5600 without restraints) Performing minimization step: 2372. Total energy = 4847.2616 kcal/mol (4839.9674 without restraints) Performing minimization step: 2373. Total energy = 4844.6689 kcal/mol (4837.3774 without restraints) Performing minimization step: 2374. Total energy = 4842.0778 kcal/mol (4834.7888 without restraints) Performing minimization step: 2375. Total energy = 4839.4886 kcal/mol (4832.2023 without restraints) Performing minimization step: 2376. Total energy = 4836.9020 kcal/mol (4829.6183 without restraints) Performing minimization step: 2377. Total energy = 4834.3173 kcal/mol (4827.0364 without restraints) Performing minimization step: 2378. Total energy = 4831.7344 kcal/mol (4824.4561 without restraints) Performing minimization step: 2379. Total energy = 4829.1534 kcal/mol (4821.8776 without restraints) Performing minimization step: 2380. Total energy = 4826.5745 kcal/mol (4819.3014 without restraints) Performing minimization step: 2381. Total energy = 4823.9977 kcal/mol (4816.7272 without restraints) Performing minimization step: 2382. Total energy = 4821.4231 kcal/mol (4814.1554 without restraints) Performing minimization step: 2383. Total energy = 4818.8504 kcal/mol (4811.5852 without restraints) Performing minimization step: 2384. Total energy = 4816.2797 kcal/mol (4809.0171 without restraints) Performing minimization step: 2385. Total energy = 4813.7112 kcal/mol (4806.4512 without restraints) Performing minimization step: 2386. Total energy = 4811.1446 kcal/mol (4803.8871 without restraints) Performing minimization step: 2387. Total energy = 4808.5802 kcal/mol (4801.3256 without restraints) Performing minimization step: 2388. Total energy = 4806.0178 kcal/mol (4798.7658 without restraints) Performing minimization step: 2389. Total energy = 4803.4574 kcal/mol (4796.2081 without restraints) Performing minimization step: 2390. Total energy = 4800.8991 kcal/mol (4793.6523 without restraints) Performing minimization step: 2391. Total energy = 4798.3428 kcal/mol (4791.0987 without restraints) Performing minimization step: 2392. Total energy = 4795.7886 kcal/mol (4788.5471 without restraints) Performing minimization step: 2393. Total energy = 4793.2362 kcal/mol (4785.9973 without restraints) Performing minimization step: 2394. Total energy = 4790.6860 kcal/mol (4783.4497 without restraints) Performing minimization step: 2395. Total energy = 4788.1379 kcal/mol (4780.9042 without restraints) Performing minimization step: 2396. Total energy = 4785.5914 kcal/mol (4778.3603 without restraints) Performing minimization step: 2397. Total energy = 4783.0471 kcal/mol (4775.8188 without restraints) Performing minimization step: 2398. Total energy = 4780.5043 kcal/mol (4773.2784 without restraints) Performing minimization step: 2399. Total energy = 4777.9644 kcal/mol (4770.7412 without restraints) Performing minimization step: 2400. Total energy = 4775.4269 kcal/mol (4768.2063 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 4772.8908 kcal/mol (4765.6729 without restraints) Performing minimization step: 2402. Total energy = 4770.3567 kcal/mol (4763.1414 without restraints) Performing minimization step: 2403. Total energy = 4767.8246 kcal/mol (4760.6118 without restraints) Performing minimization step: 2404. Total energy = 4765.2943 kcal/mol (4758.0842 without restraints) Performing minimization step: 2405. Total energy = 4762.7662 kcal/mol (4755.5587 without restraints) Performing minimization step: 2406. Total energy = 4760.2401 kcal/mol (4753.0354 without restraints) Performing minimization step: 2407. Total energy = 4757.7160 kcal/mol (4750.5137 without restraints) Performing minimization step: 2408. Total energy = 4755.1940 kcal/mol (4747.9943 without restraints) Performing minimization step: 2409. Total energy = 4752.6739 kcal/mol (4745.4768 without restraints) Performing minimization step: 2410. Total energy = 4750.1563 kcal/mol (4742.9622 without restraints) Performing minimization step: 2411. Total energy = 4747.6404 kcal/mol (4740.4485 without restraints) Performing minimization step: 2412. Total energy = 4745.1265 kcal/mol (4737.9373 without restraints) Performing minimization step: 2413. Total energy = 4742.6147 kcal/mol (4735.4280 without restraints) Performing minimization step: 2414. Total energy = 4740.1044 kcal/mol (4732.9203 without restraints) Performing minimization step: 2415. Total energy = 4737.5959 kcal/mol (4730.4144 without restraints) Performing minimization step: 2416. Total energy = 4735.0896 kcal/mol (4727.9107 without restraints) Performing minimization step: 2417. Total energy = 4732.5853 kcal/mol (4725.4091 without restraints) Performing minimization step: 2418. Total energy = 4730.0836 kcal/mol (4722.9100 without restraints) Performing minimization step: 2419. Total energy = 4727.5833 kcal/mol (4720.4123 without restraints) Performing minimization step: 2420. Total energy = 4725.0850 kcal/mol (4717.9165 without restraints) Performing minimization step: 2421. Total energy = 4722.5889 kcal/mol (4715.4230 without restraints) Performing minimization step: 2422. Total energy = 4720.0948 kcal/mol (4712.9315 without restraints) Performing minimization step: 2423. Total energy = 4717.6026 kcal/mol (4710.4419 without restraints) Performing minimization step: 2424. Total energy = 4715.1122 kcal/mol (4707.9541 without restraints) Performing minimization step: 2425. Total energy = 4712.6237 kcal/mol (4705.4683 without restraints) Performing minimization step: 2426. Total energy = 4710.1373 kcal/mol (4702.9844 without restraints) Performing minimization step: 2427. Total energy = 4707.6531 kcal/mol (4700.5028 without restraints) Performing minimization step: 2428. Total energy = 4705.1706 kcal/mol (4698.0229 without restraints) Performing minimization step: 2429. Total energy = 4702.6897 kcal/mol (4695.5446 without restraints) Performing minimization step: 2430. Total energy = 4700.2111 kcal/mol (4693.0684 without restraints) Performing minimization step: 2431. Total energy = 4697.7344 kcal/mol (4690.5944 without restraints) Performing minimization step: 2432. Total energy = 4695.2596 kcal/mol (4688.1223 without restraints) Performing minimization step: 2433. Total energy = 4692.7872 kcal/mol (4685.6522 without restraints) Performing minimization step: 2434. Total energy = 4690.3166 kcal/mol (4683.1844 without restraints) Performing minimization step: 2435. Total energy = 4687.8480 kcal/mol (4680.7185 without restraints) Performing minimization step: 2436. Total energy = 4685.3814 kcal/mol (4678.2544 without restraints) Performing minimization step: 2437. Total energy = 4682.9167 kcal/mol (4675.7923 without restraints) Performing minimization step: 2438. Total energy = 4680.4539 kcal/mol (4673.3321 without restraints) Performing minimization step: 2439. Total energy = 4677.9934 kcal/mol (4670.8741 without restraints) Performing minimization step: 2440. Total energy = 4675.5346 kcal/mol (4668.4179 without restraints) Performing minimization step: 2441. Total energy = 4673.0775 kcal/mol (4665.9635 without restraints) Performing minimization step: 2442. Total energy = 4670.6232 kcal/mol (4663.5117 without restraints) Performing minimization step: 2443. Total energy = 4668.1703 kcal/mol (4661.0613 without restraints) Performing minimization step: 2444. Total energy = 4665.7195 kcal/mol (4658.6131 without restraints) Performing minimization step: 2445. Total energy = 4663.2705 kcal/mol (4656.1667 without restraints) Performing minimization step: 2446. Total energy = 4660.8234 kcal/mol (4653.7222 without restraints) Performing minimization step: 2447. Total energy = 4658.3784 kcal/mol (4651.2797 without restraints) Performing minimization step: 2448. Total energy = 4655.9352 kcal/mol (4648.8391 without restraints) Performing minimization step: 2449. Total energy = 4653.4941 kcal/mol (4646.4006 without restraints) Performing minimization step: 2450. Total energy = 4651.0549 kcal/mol (4643.9639 without restraints) Performing minimization step: 2451. Total energy = 4648.6176 kcal/mol (4641.5292 without restraints) Performing minimization step: 2452. Total energy = 4646.1820 kcal/mol (4639.0962 without restraints) Performing minimization step: 2453. Total energy = 4643.7487 kcal/mol (4636.6655 without restraints) Performing minimization step: 2454. Total energy = 4641.3173 kcal/mol (4634.2366 without restraints) Performing minimization step: 2455. Total energy = 4638.8883 kcal/mol (4631.8102 without restraints) Performing minimization step: 2456. Total energy = 4636.4611 kcal/mol (4629.3857 without restraints) Performing minimization step: 2457. Total energy = 4634.0358 kcal/mol (4626.9629 without restraints) Performing minimization step: 2458. Total energy = 4631.6119 kcal/mol (4624.5415 without restraints) Performing minimization step: 2459. Total energy = 4629.1905 kcal/mol (4622.1228 without restraints) Performing minimization step: 2460. Total energy = 4626.7710 kcal/mol (4619.7057 without restraints) Performing minimization step: 2461. Total energy = 4624.3536 kcal/mol (4617.2910 without restraints) Performing minimization step: 2462. Total energy = 4621.9381 kcal/mol (4614.8780 without restraints) Performing minimization step: 2463. Total energy = 4619.5244 kcal/mol (4612.4669 without restraints) Performing minimization step: 2464. Total energy = 4617.1126 kcal/mol (4610.0575 without restraints) Performing minimization step: 2465. Total energy = 4614.7028 kcal/mol (4607.6503 without restraints) Performing minimization step: 2466. Total energy = 4612.2946 kcal/mol (4605.2446 without restraints) Performing minimization step: 2467. Total energy = 4609.8884 kcal/mol (4602.8410 without restraints) Performing minimization step: 2468. Total energy = 4607.4849 kcal/mol (4600.4400 without restraints) Performing minimization step: 2469. Total energy = 4605.0826 kcal/mol (4598.0403 without restraints) Performing minimization step: 2470. Total energy = 4602.6826 kcal/mol (4595.6430 without restraints) Performing minimization step: 2471. Total energy = 4600.2841 kcal/mol (4593.2470 without restraints) Performing minimization step: 2472. Total energy = 4597.8881 kcal/mol (4590.8535 without restraints) Performing minimization step: 2473. Total energy = 4595.4938 kcal/mol (4588.4620 without restraints) Performing minimization step: 2474. Total energy = 4593.1014 kcal/mol (4586.0719 without restraints) Performing minimization step: 2475. Total energy = 4590.7108 kcal/mol (4583.6839 without restraints) Performing minimization step: 2476. Total energy = 4588.3221 kcal/mol (4581.2977 without restraints) Performing minimization step: 2477. Total energy = 4585.9353 kcal/mol (4578.9134 without restraints) Performing minimization step: 2478. Total energy = 4583.5506 kcal/mol (4576.5313 without restraints) Performing minimization step: 2479. Total energy = 4581.1677 kcal/mol (4574.1509 without restraints) Performing minimization step: 2480. Total energy = 4578.7866 kcal/mol (4571.7724 without restraints) Performing minimization step: 2481. Total energy = 4576.4079 kcal/mol (4569.3962 without restraints) Performing minimization step: 2482. Total energy = 4574.0309 kcal/mol (4567.0219 without restraints) Performing minimization step: 2483. Total energy = 4571.6558 kcal/mol (4564.6492 without restraints) Performing minimization step: 2484. Total energy = 4569.2823 kcal/mol (4562.2782 without restraints) Performing minimization step: 2485. Total energy = 4566.9109 kcal/mol (4559.9094 without restraints) Performing minimization step: 2486. Total energy = 4564.5415 kcal/mol (4557.5425 without restraints) Performing minimization step: 2487. Total energy = 4562.1741 kcal/mol (4555.1776 without restraints) Performing minimization step: 2488. Total energy = 4559.8084 kcal/mol (4552.8145 without restraints) Performing minimization step: 2489. Total energy = 4557.4445 kcal/mol (4550.4531 without restraints) Performing minimization step: 2490. Total energy = 4555.0828 kcal/mol (4548.0939 without restraints) Performing minimization step: 2491. Total energy = 4552.7234 kcal/mol (4545.7372 without restraints) Performing minimization step: 2492. Total energy = 4550.3654 kcal/mol (4543.3815 without restraints) Performing minimization step: 2493. Total energy = 4548.0092 kcal/mol (4541.0280 without restraints) Performing minimization step: 2494. Total energy = 4545.6550 kcal/mol (4538.6763 without restraints) Performing minimization step: 2495. Total energy = 4543.3036 kcal/mol (4536.3274 without restraints) Performing minimization step: 2496. Total energy = 4540.9532 kcal/mol (4533.9796 without restraints) Performing minimization step: 2497. Total energy = 4538.6048 kcal/mol (4531.6336 without restraints) Performing minimization step: 2498. Total energy = 4536.2582 kcal/mol (4529.2895 without restraints) Performing minimization step: 2499. Total energy = 4533.9133 kcal/mol (4526.9472 without restraints) Performing minimization step: 2500. Total energy = 4531.5709 kcal/mol (4524.6073 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 4529.2296 kcal/mol (4522.2685 without restraints) Performing minimization step: 2502. Total energy = 4526.8909 kcal/mol (4519.9324 without restraints) Performing minimization step: 2503. Total energy = 4524.5547 kcal/mol (4517.5988 without restraints) Performing minimization step: 2504. Total energy = 4522.2195 kcal/mol (4515.2659 without restraints) Performing minimization step: 2505. Total energy = 4519.8866 kcal/mol (4512.9356 without restraints) Performing minimization step: 2506. Total energy = 4517.5552 kcal/mol (4510.6068 without restraints) Performing minimization step: 2507. Total energy = 4515.2257 kcal/mol (4508.2798 without restraints) Performing minimization step: 2508. Total energy = 4512.8981 kcal/mol (4505.9547 without restraints) Performing minimization step: 2509. Total energy = 4510.5729 kcal/mol (4503.6320 without restraints) Performing minimization step: 2510. Total energy = 4508.2491 kcal/mol (4501.3108 without restraints) Performing minimization step: 2511. Total energy = 4505.9273 kcal/mol (4498.9914 without restraints) Performing minimization step: 2512. Total energy = 4503.6073 kcal/mol (4496.6740 without restraints) Performing minimization step: 2513. Total energy = 4501.2892 kcal/mol (4494.3584 without restraints) Performing minimization step: 2514. Total energy = 4498.9732 kcal/mol (4492.0448 without restraints) Performing minimization step: 2515. Total energy = 4496.6590 kcal/mol (4489.7332 without restraints) Performing minimization step: 2516. Total energy = 4494.3465 kcal/mol (4487.4232 without restraints) Performing minimization step: 2517. Total energy = 4492.0357 kcal/mol (4485.1149 without restraints) Performing minimization step: 2518. Total energy = 4489.7272 kcal/mol (4482.8089 without restraints) Performing minimization step: 2519. Total energy = 4487.4204 kcal/mol (4480.5047 without restraints) Performing minimization step: 2520. Total energy = 4485.1157 kcal/mol (4478.2025 without restraints) Performing minimization step: 2521. Total energy = 4482.8127 kcal/mol (4475.9018 without restraints) Performing minimization step: 2522. Total energy = 4480.5114 kcal/mol (4473.6032 without restraints) Performing minimization step: 2523. Total energy = 4478.2122 kcal/mol (4471.3064 without restraints) Performing minimization step: 2524. Total energy = 4475.9151 kcal/mol (4469.0120 without restraints) Performing minimization step: 2525. Total energy = 4473.6197 kcal/mol (4466.7190 without restraints) Performing minimization step: 2526. Total energy = 4471.3264 kcal/mol (4464.4282 without restraints) Performing minimization step: 2527. Total energy = 4469.0350 kcal/mol (4462.1392 without restraints) Performing minimization step: 2528. Total energy = 4466.7453 kcal/mol (4459.8523 without restraints) Performing minimization step: 2529. Total energy = 4464.4574 kcal/mol (4457.5666 without restraints) Performing minimization step: 2530. Total energy = 4462.1713 kcal/mol (4455.2830 without restraints) Performing minimization step: 2531. Total energy = 4459.8873 kcal/mol (4453.0015 without restraints) Performing minimization step: 2532. Total energy = 4457.6048 kcal/mol (4450.7215 without restraints) Performing minimization step: 2533. Total energy = 4455.3242 kcal/mol (4448.4435 without restraints) Performing minimization step: 2534. Total energy = 4453.0455 kcal/mol (4446.1671 without restraints) Performing minimization step: 2535. Total energy = 4450.7685 kcal/mol (4443.8926 without restraints) Performing minimization step: 2536. Total energy = 4448.4936 kcal/mol (4441.6203 without restraints) Performing minimization step: 2537. Total energy = 4446.2206 kcal/mol (4439.3498 without restraints) Performing minimization step: 2538. Total energy = 4443.9498 kcal/mol (4437.0815 without restraints) Performing minimization step: 2539. Total energy = 4441.6806 kcal/mol (4434.8148 without restraints) Performing minimization step: 2540. Total energy = 4439.4132 kcal/mol (4432.5498 without restraints) Performing minimization step: 2541. Total energy = 4437.1479 kcal/mol (4430.2871 without restraints) Performing minimization step: 2542. Total energy = 4434.8842 kcal/mol (4428.0258 without restraints) Performing minimization step: 2543. Total energy = 4432.6221 kcal/mol (4425.7662 without restraints) Performing minimization step: 2544. Total energy = 4430.3623 kcal/mol (4423.5089 without restraints) Performing minimization step: 2545. Total energy = 4428.1041 kcal/mol (4421.2532 without restraints) Performing minimization step: 2546. Total energy = 4425.8478 kcal/mol (4418.9994 without restraints) Performing minimization step: 2547. Total energy = 4423.5935 kcal/mol (4416.7476 without restraints) Performing minimization step: 2548. Total energy = 4421.3409 kcal/mol (4414.4976 without restraints) Performing minimization step: 2549. Total energy = 4419.0903 kcal/mol (4412.2493 without restraints) Performing minimization step: 2550. Total energy = 4416.8415 kcal/mol (4410.0030 without restraints) Performing minimization step: 2551. Total energy = 4414.5947 kcal/mol (4407.7586 without restraints) Performing minimization step: 2552. Total energy = 4412.3496 kcal/mol (4405.5162 without restraints) Performing minimization step: 2553. Total energy = 4410.1066 kcal/mol (4403.2756 without restraints) Performing minimization step: 2554. Total energy = 4407.8654 kcal/mol (4401.0368 without restraints) Performing minimization step: 2555. Total energy = 4405.6257 kcal/mol (4398.7994 without restraints) Performing minimization step: 2556. Total energy = 4403.3881 kcal/mol (4396.5644 without restraints) Performing minimization step: 2557. Total energy = 4401.1527 kcal/mol (4394.3316 without restraints) Performing minimization step: 2558. Total energy = 4398.9190 kcal/mol (4392.1002 without restraints) Performing minimization step: 2559. Total energy = 4396.6870 kcal/mol (4389.8707 without restraints) Performing minimization step: 2560. Total energy = 4394.4568 kcal/mol (4387.6432 without restraints) Performing minimization step: 2561. Total energy = 4392.2285 kcal/mol (4385.4172 without restraints) Performing minimization step: 2562. Total energy = 4390.0019 kcal/mol (4383.1931 without restraints) Performing minimization step: 2563. Total energy = 4387.7775 kcal/mol (4380.9709 without restraints) Performing minimization step: 2564. Total energy = 4385.5543 kcal/mol (4378.7504 without restraints) Performing minimization step: 2565. Total energy = 4383.3331 kcal/mol (4376.5316 without restraints) Performing minimization step: 2566. Total energy = 4381.1139 kcal/mol (4374.3150 without restraints) Performing minimization step: 2567. Total energy = 4378.8964 kcal/mol (4372.0999 without restraints) Performing minimization step: 2568. Total energy = 4376.6809 kcal/mol (4369.8869 without restraints) Performing minimization step: 2569. Total energy = 4374.4677 kcal/mol (4367.6761 without restraints) Performing minimization step: 2570. Total energy = 4372.2556 kcal/mol (4365.4665 without restraints) Performing minimization step: 2571. Total energy = 4370.0455 kcal/mol (4363.2588 without restraints) Performing minimization step: 2572. Total energy = 4367.8374 kcal/mol (4361.0531 without restraints) Performing minimization step: 2573. Total energy = 4365.6306 kcal/mol (4358.8487 without restraints) Performing minimization step: 2574. Total energy = 4363.4262 kcal/mol (4356.6468 without restraints) Performing minimization step: 2575. Total energy = 4361.2235 kcal/mol (4354.4466 without restraints) Performing minimization step: 2576. Total energy = 4359.0225 kcal/mol (4352.2481 without restraints) Performing minimization step: 2577. Total energy = 4356.8233 kcal/mol (4350.0513 without restraints) Performing minimization step: 2578. Total energy = 4354.6264 kcal/mol (4347.8570 without restraints) Performing minimization step: 2579. Total energy = 4352.4312 kcal/mol (4345.6642 without restraints) Performing minimization step: 2580. Total energy = 4350.2374 kcal/mol (4343.4727 without restraints) Performing minimization step: 2581. Total energy = 4348.0457 kcal/mol (4341.2836 without restraints) Performing minimization step: 2582. Total energy = 4345.8555 kcal/mol (4339.0957 without restraints) Performing minimization step: 2583. Total energy = 4343.6672 kcal/mol (4336.9101 without restraints) Performing minimization step: 2584. Total energy = 4341.4809 kcal/mol (4334.7261 without restraints) Performing minimization step: 2585. Total energy = 4339.2962 kcal/mol (4332.5438 without restraints) Performing minimization step: 2586. Total energy = 4337.1133 kcal/mol (4330.3634 without restraints) Performing minimization step: 2587. Total energy = 4334.9322 kcal/mol (4328.1847 without restraints) Performing minimization step: 2588. Total energy = 4332.7528 kcal/mol (4326.0076 without restraints) Performing minimization step: 2589. Total energy = 4330.5754 kcal/mol (4323.8328 without restraints) Performing minimization step: 2590. Total energy = 4328.3996 kcal/mol (4321.6592 without restraints) Performing minimization step: 2591. Total energy = 4326.2258 kcal/mol (4319.4881 without restraints) Performing minimization step: 2592. Total energy = 4324.0539 kcal/mol (4317.3187 without restraints) Performing minimization step: 2593. Total energy = 4321.8843 kcal/mol (4315.1515 without restraints) Performing minimization step: 2594. Total energy = 4319.7162 kcal/mol (4312.9858 without restraints) Performing minimization step: 2595. Total energy = 4317.5495 kcal/mol (4310.8215 without restraints) Performing minimization step: 2596. Total energy = 4315.3848 kcal/mol (4308.6593 without restraints) Performing minimization step: 2597. Total energy = 4313.2218 kcal/mol (4306.4987 without restraints) Performing minimization step: 2598. Total energy = 4311.0606 kcal/mol (4304.3399 without restraints) Performing minimization step: 2599. Total energy = 4308.9012 kcal/mol (4302.1829 without restraints) Performing minimization step: 2600. Total energy = 4306.7441 kcal/mol (4300.0285 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 4304.5888 kcal/mol (4297.8755 without restraints) Performing minimization step: 2602. Total energy = 4302.4347 kcal/mol (4295.7238 without restraints) Performing minimization step: 2603. Total energy = 4300.2828 kcal/mol (4293.5745 without restraints) Performing minimization step: 2604. Total energy = 4298.1326 kcal/mol (4291.4264 without restraints) Performing minimization step: 2605. Total energy = 4295.9839 kcal/mol (4289.2802 without restraints) Performing minimization step: 2606. Total energy = 4293.8373 kcal/mol (4287.1361 without restraints) Performing minimization step: 2607. Total energy = 4291.6922 kcal/mol (4284.9934 without restraints) Performing minimization step: 2608. Total energy = 4289.5490 kcal/mol (4282.8527 without restraints) Performing minimization step: 2609. Total energy = 4287.4077 kcal/mol (4280.7137 without restraints) Performing minimization step: 2610. Total energy = 4285.2681 kcal/mol (4278.5765 without restraints) Performing minimization step: 2611. Total energy = 4283.1302 kcal/mol (4276.4410 without restraints) Performing minimization step: 2612. Total energy = 4280.9938 kcal/mol (4274.3071 without restraints) Performing minimization step: 2613. Total energy = 4278.8596 kcal/mol (4272.1752 without restraints) Performing minimization step: 2614. Total energy = 4276.7269 kcal/mol (4270.0450 without restraints) Performing minimization step: 2615. Total energy = 4274.5961 kcal/mol (4267.9167 without restraints) Performing minimization step: 2616. Total energy = 4272.4673 kcal/mol (4265.7902 without restraints) Performing minimization step: 2617. Total energy = 4270.3404 kcal/mol (4263.6657 without restraints) Performing minimization step: 2618. Total energy = 4268.2148 kcal/mol (4261.5426 without restraints) Performing minimization step: 2619. Total energy = 4266.0911 kcal/mol (4259.4212 without restraints) Performing minimization step: 2620. Total energy = 4263.9696 kcal/mol (4257.3022 without restraints) Performing minimization step: 2621. Total energy = 4261.8494 kcal/mol (4255.1844 without restraints) Performing minimization step: 2622. Total energy = 4259.7309 kcal/mol (4253.0683 without restraints) Performing minimization step: 2623. Total energy = 4257.6145 kcal/mol (4250.9542 without restraints) Performing minimization step: 2624. Total energy = 4255.4996 kcal/mol (4248.8419 without restraints) Performing minimization step: 2625. Total energy = 4253.3873 kcal/mol (4246.7319 without restraints) Performing minimization step: 2626. Total energy = 4251.2762 kcal/mol (4244.6232 without restraints) Performing minimization step: 2627. Total energy = 4249.1664 kcal/mol (4242.5158 without restraints) Performing minimization step: 2628. Total energy = 4247.0589 kcal/mol (4240.4107 without restraints) Performing minimization step: 2629. Total energy = 4244.9530 kcal/mol (4238.3074 without restraints) Performing minimization step: 2630. Total energy = 4242.8495 kcal/mol (4236.2063 without restraints) Performing minimization step: 2631. Total energy = 4240.7474 kcal/mol (4234.1065 without restraints) Performing minimization step: 2632. Total energy = 4238.6464 kcal/mol (4232.0078 without restraints) Performing minimization step: 2633. Total energy = 4236.5473 kcal/mol (4229.9111 without restraints) Performing minimization step: 2634. Total energy = 4234.4502 kcal/mol (4227.8164 without restraints) Performing minimization step: 2635. Total energy = 4232.3545 kcal/mol (4225.7231 without restraints) Performing minimization step: 2636. Total energy = 4230.2607 kcal/mol (4223.6317 without restraints) Performing minimization step: 2637. Total energy = 4228.1687 kcal/mol (4221.5421 without restraints) Performing minimization step: 2638. Total energy = 4226.0787 kcal/mol (4219.4545 without restraints) Performing minimization step: 2639. Total energy = 4223.9901 kcal/mol (4217.3683 without restraints) Performing minimization step: 2640. Total energy = 4221.9032 kcal/mol (4215.2837 without restraints) Performing minimization step: 2641. Total energy = 4219.8183 kcal/mol (4213.2012 without restraints) Performing minimization step: 2642. Total energy = 4217.7350 kcal/mol (4211.1203 without restraints) Performing minimization step: 2643. Total energy = 4215.6534 kcal/mol (4209.0411 without restraints) Performing minimization step: 2644. Total energy = 4213.5738 kcal/mol (4206.9639 without restraints) Performing minimization step: 2645. Total energy = 4211.4960 kcal/mol (4204.8886 without restraints) Performing minimization step: 2646. Total energy = 4209.4199 kcal/mol (4202.8148 without restraints) Performing minimization step: 2647. Total energy = 4207.3455 kcal/mol (4200.7428 without restraints) Performing minimization step: 2648. Total energy = 4205.2726 kcal/mol (4198.6722 without restraints) Performing minimization step: 2649. Total energy = 4203.2014 kcal/mol (4196.6034 without restraints) Performing minimization step: 2650. Total energy = 4201.1322 kcal/mol (4194.5365 without restraints) Performing minimization step: 2651. Total energy = 4199.0645 kcal/mol (4192.4713 without restraints) Performing minimization step: 2652. Total energy = 4196.9985 kcal/mol (4190.4078 without restraints) Performing minimization step: 2653. Total energy = 4194.9342 kcal/mol (4188.3457 without restraints) Performing minimization step: 2654. Total energy = 4192.8718 kcal/mol (4186.2858 without restraints) Performing minimization step: 2655. Total energy = 4190.8110 kcal/mol (4184.2273 without restraints) Performing minimization step: 2656. Total energy = 4188.7525 kcal/mol (4182.1711 without restraints) Performing minimization step: 2657. Total energy = 4186.6949 kcal/mol (4180.1160 without restraints) Performing minimization step: 2658. Total energy = 4184.6390 kcal/mol (4178.0625 without restraints) Performing minimization step: 2659. Total energy = 4182.5855 kcal/mol (4176.0113 without restraints) Performing minimization step: 2660. Total energy = 4180.5337 kcal/mol (4173.9617 without restraints) Performing minimization step: 2661. Total energy = 4178.4832 kcal/mol (4171.9138 without restraints) Performing minimization step: 2662. Total energy = 4176.4344 kcal/mol (4169.8673 without restraints) Performing minimization step: 2663. Total energy = 4174.3876 kcal/mol (4167.8228 without restraints) Performing minimization step: 2664. Total energy = 4172.3424 kcal/mol (4165.7800 without restraints) Performing minimization step: 2665. Total energy = 4170.2991 kcal/mol (4163.7390 without restraints) Performing minimization step: 2666. Total energy = 4168.2576 kcal/mol (4161.7002 without restraints) Performing minimization step: 2667. Total energy = 4166.2177 kcal/mol (4159.6623 without restraints) Performing minimization step: 2668. Total energy = 4164.1790 kcal/mol (4157.6260 without restraints) Performing minimization step: 2669. Total energy = 4162.1422 kcal/mol (4155.5916 without restraints) Performing minimization step: 2670. Total energy = 4160.1072 kcal/mol (4153.5589 without restraints) Performing minimization step: 2671. Total energy = 4158.0743 kcal/mol (4151.5284 without restraints) Performing minimization step: 2672. Total energy = 4156.0429 kcal/mol (4149.4994 without restraints) Performing minimization step: 2673. Total energy = 4154.0134 kcal/mol (4147.4722 without restraints) Performing minimization step: 2674. Total energy = 4151.9853 kcal/mol (4145.4465 without restraints) Performing minimization step: 2675. Total energy = 4149.9590 kcal/mol (4143.4226 without restraints) Performing minimization step: 2676. Total energy = 4147.9344 kcal/mol (4141.4003 without restraints) Performing minimization step: 2677. Total energy = 4145.9114 kcal/mol (4139.3797 without restraints) Performing minimization step: 2678. Total energy = 4143.8898 kcal/mol (4137.3602 without restraints) Performing minimization step: 2679. Total energy = 4141.8700 kcal/mol (4135.3429 without restraints) Performing minimization step: 2680. Total energy = 4139.8523 kcal/mol (4133.3277 without restraints) Performing minimization step: 2681. Total energy = 4137.8358 kcal/mol (4131.3134 without restraints) Performing minimization step: 2682. Total energy = 4135.8211 kcal/mol (4129.3011 without restraints) Performing minimization step: 2683. Total energy = 4133.8081 kcal/mol (4127.2904 without restraints) Performing minimization step: 2684. Total energy = 4131.7970 kcal/mol (4125.2817 without restraints) Performing minimization step: 2685. Total energy = 4129.7875 kcal/mol (4123.2746 without restraints) Performing minimization step: 2686. Total energy = 4127.7805 kcal/mol (4121.2698 without restraints) Performing minimization step: 2687. Total energy = 4125.7747 kcal/mol (4119.2666 without restraints) Performing minimization step: 2688. Total energy = 4123.7703 kcal/mol (4117.2643 without restraints) Performing minimization step: 2689. Total energy = 4121.7680 kcal/mol (4115.2645 without restraints) Performing minimization step: 2690. Total energy = 4119.7669 kcal/mol (4113.2656 without restraints) Performing minimization step: 2691. Total energy = 4117.7672 kcal/mol (4111.2682 without restraints) Performing minimization step: 2692. Total energy = 4115.7697 kcal/mol (4109.2731 without restraints) Performing minimization step: 2693. Total energy = 4113.7741 kcal/mol (4107.2798 without restraints) Performing minimization step: 2694. Total energy = 4111.7795 kcal/mol (4105.2876 without restraints) Performing minimization step: 2695. Total energy = 4109.7869 kcal/mol (4103.2973 without restraints) Performing minimization step: 2696. Total energy = 4107.7964 kcal/mol (4101.3091 without restraints) Performing minimization step: 2697. Total energy = 4105.8071 kcal/mol (4099.3222 without restraints) Performing minimization step: 2698. Total energy = 4103.8193 kcal/mol (4097.3367 without restraints) Performing minimization step: 2699. Total energy = 4101.8332 kcal/mol (4095.3529 without restraints) Performing minimization step: 2700. Total energy = 4099.8490 kcal/mol (4093.3711 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 4097.8662 kcal/mol (4091.3905 without restraints) Performing minimization step: 2702. Total energy = 4095.8852 kcal/mol (4089.4119 without restraints) Performing minimization step: 2703. Total energy = 4093.9056 kcal/mol (4087.4345 without restraints) Performing minimization step: 2704. Total energy = 4091.9279 kcal/mol (4085.4593 without restraints) Performing minimization step: 2705. Total energy = 4089.9518 kcal/mol (4083.4854 without restraints) Performing minimization step: 2706. Total energy = 4087.9775 kcal/mol (4081.5134 without restraints) Performing minimization step: 2707. Total energy = 4086.0043 kcal/mol (4079.5426 without restraints) Performing minimization step: 2708. Total energy = 4084.0331 kcal/mol (4077.5737 without restraints) Performing minimization step: 2709. Total energy = 4082.0637 kcal/mol (4075.6066 without restraints) Performing minimization step: 2710. Total energy = 4080.0956 kcal/mol (4073.6410 without restraints) Performing minimization step: 2711. Total energy = 4078.1294 kcal/mol (4071.6770 without restraints) Performing minimization step: 2712. Total energy = 4076.1651 kcal/mol (4069.7152 without restraints) Performing minimization step: 2713. Total energy = 4074.2023 kcal/mol (4067.7545 without restraints) Performing minimization step: 2714. Total energy = 4072.2414 kcal/mol (4065.7959 without restraints) Performing minimization step: 2715. Total energy = 4070.2814 kcal/mol (4063.8382 without restraints) Performing minimization step: 2716. Total energy = 4068.3232 kcal/mol (4061.8823 without restraints) Performing minimization step: 2717. Total energy = 4066.3671 kcal/mol (4059.9286 without restraints) Performing minimization step: 2718. Total energy = 4064.4126 kcal/mol (4057.9764 without restraints) Performing minimization step: 2719. Total energy = 4062.4595 kcal/mol (4056.0256 without restraints) Performing minimization step: 2720. Total energy = 4060.5082 kcal/mol (4054.0766 without restraints) Performing minimization step: 2721. Total energy = 4058.5589 kcal/mol (4052.1295 without restraints) Performing minimization step: 2722. Total energy = 4056.6111 kcal/mol (4050.1840 without restraints) Performing minimization step: 2723. Total energy = 4054.6647 kcal/mol (4048.2401 without restraints) Performing minimization step: 2724. Total energy = 4052.7199 kcal/mol (4046.2975 without restraints) Performing minimization step: 2725. Total energy = 4050.7767 kcal/mol (4044.3566 without restraints) Performing minimization step: 2726. Total energy = 4048.8354 kcal/mol (4042.4175 without restraints) Performing minimization step: 2727. Total energy = 4046.8952 kcal/mol (4040.4797 without restraints) Performing minimization step: 2728. Total energy = 4044.9569 kcal/mol (4038.5437 without restraints) Performing minimization step: 2729. Total energy = 4043.0203 kcal/mol (4036.6094 without restraints) Performing minimization step: 2730. Total energy = 4041.0850 kcal/mol (4034.6762 without restraints) Performing minimization step: 2731. Total energy = 4039.1513 kcal/mol (4032.7450 without restraints) Performing minimization step: 2732. Total energy = 4037.2193 kcal/mol (4030.8152 without restraints) Performing minimization step: 2733. Total energy = 4035.2890 kcal/mol (4028.8871 without restraints) Performing minimization step: 2734. Total energy = 4033.3605 kcal/mol (4026.9611 without restraints) Performing minimization step: 2735. Total energy = 4031.4335 kcal/mol (4025.0363 without restraints) Performing minimization step: 2736. Total energy = 4029.5082 kcal/mol (4023.1133 without restraints) Performing minimization step: 2737. Total energy = 4027.5850 kcal/mol (4021.1924 without restraints) Performing minimization step: 2738. Total energy = 4025.6628 kcal/mol (4019.2726 without restraints) Performing minimization step: 2739. Total energy = 4023.7425 kcal/mol (4017.3546 without restraints) Performing minimization step: 2740. Total energy = 4021.8238 kcal/mol (4015.4381 without restraints) Performing minimization step: 2741. Total energy = 4019.9069 kcal/mol (4013.5234 without restraints) Performing minimization step: 2742. Total energy = 4017.9910 kcal/mol (4011.6098 without restraints) Performing minimization step: 2743. Total energy = 4016.0770 kcal/mol (4009.6981 without restraints) Performing minimization step: 2744. Total energy = 4014.1647 kcal/mol (4007.7880 without restraints) Performing minimization step: 2745. Total energy = 4012.2535 kcal/mol (4005.8791 without restraints) Performing minimization step: 2746. Total energy = 4010.3442 kcal/mol (4003.9722 without restraints) Performing minimization step: 2747. Total energy = 4008.4366 kcal/mol (4002.0668 without restraints) Performing minimization step: 2748. Total energy = 4006.5306 kcal/mol (4000.1631 without restraints) Performing minimization step: 2749. Total energy = 4004.6260 kcal/mol (3998.2607 without restraints) Performing minimization step: 2750. Total energy = 4002.7230 kcal/mol (3996.3600 without restraints) Performing minimization step: 2751. Total energy = 4000.8215 kcal/mol (3994.4608 without restraints) Performing minimization step: 2752. Total energy = 3998.9219 kcal/mol (3992.5635 without restraints) Performing minimization step: 2753. Total energy = 3997.0237 kcal/mol (3990.6675 without restraints) Performing minimization step: 2754. Total energy = 3995.1271 kcal/mol (3988.7732 without restraints) Performing minimization step: 2755. Total energy = 3993.2320 kcal/mol (3986.8805 without restraints) Performing minimization step: 2756. Total energy = 3991.3386 kcal/mol (3984.9890 without restraints) Performing minimization step: 2757. Total energy = 3989.4468 kcal/mol (3983.0997 without restraints) Performing minimization step: 2758. Total energy = 3987.5565 kcal/mol (3981.2116 without restraints) Performing minimization step: 2759. Total energy = 3985.6678 kcal/mol (3979.3252 without restraints) Performing minimization step: 2760. Total energy = 3983.7807 kcal/mol (3977.4404 without restraints) Performing minimization step: 2761. Total energy = 3981.8951 kcal/mol (3975.5571 without restraints) Performing minimization step: 2762. Total energy = 3980.0112 kcal/mol (3973.6755 without restraints) Performing minimization step: 2763. Total energy = 3978.1288 kcal/mol (3971.7952 without restraints) Performing minimization step: 2764. Total energy = 3976.2480 kcal/mol (3969.9167 without restraints) Performing minimization step: 2765. Total energy = 3974.3690 kcal/mol (3968.0400 without restraints) Performing minimization step: 2766. Total energy = 3972.4911 kcal/mol (3966.1643 without restraints) Performing minimization step: 2767. Total energy = 3970.6150 kcal/mol (3964.2905 without restraints) Performing minimization step: 2768. Total energy = 3968.7406 kcal/mol (3962.4183 without restraints) Performing minimization step: 2769. Total energy = 3966.8676 kcal/mol (3960.5476 without restraints) Performing minimization step: 2770. Total energy = 3964.9966 kcal/mol (3958.6789 without restraints) Performing minimization step: 2771. Total energy = 3963.1272 kcal/mol (3956.8117 without restraints) Performing minimization step: 2772. Total energy = 3961.2581 kcal/mol (3954.9446 without restraints) Performing minimization step: 2773. Total energy = 3959.3912 kcal/mol (3953.0801 without restraints) Performing minimization step: 2774. Total energy = 3957.5260 kcal/mol (3951.2172 without restraints) Performing minimization step: 2775. Total energy = 3955.6628 kcal/mol (3949.3563 without restraints) Performing minimization step: 2776. Total energy = 3953.8010 kcal/mol (3947.4967 without restraints) Performing minimization step: 2777. Total energy = 3951.9405 kcal/mol (3945.6384 without restraints) Performing minimization step: 2778. Total energy = 3950.0818 kcal/mol (3943.7820 without restraints) Performing minimization step: 2779. Total energy = 3948.2242 kcal/mol (3941.9267 without restraints) Performing minimization step: 2780. Total energy = 3946.3685 kcal/mol (3940.0731 without restraints) Performing minimization step: 2781. Total energy = 3944.5144 kcal/mol (3938.2213 without restraints) Performing minimization step: 2782. Total energy = 3942.6618 kcal/mol (3936.3709 without restraints) Performing minimization step: 2783. Total energy = 3940.8106 kcal/mol (3934.5220 without restraints) Performing minimization step: 2784. Total energy = 3938.9613 kcal/mol (3932.6749 without restraints) Performing minimization step: 2785. Total energy = 3937.1131 kcal/mol (3930.8290 without restraints) Performing minimization step: 2786. Total energy = 3935.2668 kcal/mol (3928.9849 without restraints) Performing minimization step: 2787. Total energy = 3933.4219 kcal/mol (3927.1422 without restraints) Performing minimization step: 2788. Total energy = 3931.5785 kcal/mol (3925.3010 without restraints) Performing minimization step: 2789. Total energy = 3929.7368 kcal/mol (3923.4616 without restraints) Performing minimization step: 2790. Total energy = 3927.8964 kcal/mol (3921.6234 without restraints) Performing minimization step: 2791. Total energy = 3926.0574 kcal/mol (3919.7866 without restraints) Performing minimization step: 2792. Total energy = 3924.2206 kcal/mol (3917.9524 without restraints) Performing minimization step: 2793. Total energy = 3922.3854 kcal/mol (3916.1191 without restraints) Performing minimization step: 2794. Total energy = 3920.5514 kcal/mol (3914.2873 without restraints) Performing minimization step: 2795. Total energy = 3918.7187 kcal/mol (3912.4568 without restraints) Performing minimization step: 2796. Total energy = 3916.8876 kcal/mol (3910.6279 without restraints) Performing minimization step: 2797. Total energy = 3915.0582 kcal/mol (3908.8008 without restraints) Performing minimization step: 2798. Total energy = 3913.2301 kcal/mol (3906.9749 without restraints) Performing minimization step: 2799. Total energy = 3911.4037 kcal/mol (3905.1507 without restraints) Performing minimization step: 2800. Total energy = 3909.5787 kcal/mol (3903.3280 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 3907.7552 kcal/mol (3901.5066 without restraints) Performing minimization step: 2802. Total energy = 3905.9335 kcal/mol (3899.6871 without restraints) Performing minimization step: 2803. Total energy = 3904.1127 kcal/mol (3897.8686 without restraints) Performing minimization step: 2804. Total energy = 3902.2938 kcal/mol (3896.0519 without restraints) Performing minimization step: 2805. Total energy = 3900.4766 kcal/mol (3894.2369 without restraints) Performing minimization step: 2806. Total energy = 3898.6608 kcal/mol (3892.4233 without restraints) Performing minimization step: 2807. Total energy = 3896.8466 kcal/mol (3890.6113 without restraints) Performing minimization step: 2808. Total energy = 3895.0337 kcal/mol (3888.8006 without restraints) Performing minimization step: 2809. Total energy = 3893.2224 kcal/mol (3886.9915 without restraints) Performing minimization step: 2810. Total energy = 3891.4126 kcal/mol (3885.1841 without restraints) Performing minimization step: 2811. Total energy = 3889.6050 kcal/mol (3883.3786 without restraints) Performing minimization step: 2812. Total energy = 3887.7980 kcal/mol (3881.5738 without restraints) Performing minimization step: 2813. Total energy = 3885.9927 kcal/mol (3879.7707 without restraints) Performing minimization step: 2814. Total energy = 3884.1889 kcal/mol (3877.9690 without restraints) Performing minimization step: 2815. Total energy = 3882.3868 kcal/mol (3876.1691 without restraints) Performing minimization step: 2816. Total energy = 3880.5860 kcal/mol (3874.3706 without restraints) Performing minimization step: 2817. Total energy = 3878.7867 kcal/mol (3872.5733 without restraints) Performing minimization step: 2818. Total energy = 3876.9891 kcal/mol (3870.7780 without restraints) Performing minimization step: 2819. Total energy = 3875.1930 kcal/mol (3868.9841 without restraints) Performing minimization step: 2820. Total energy = 3873.3980 kcal/mol (3867.1913 without restraints) Performing minimization step: 2821. Total energy = 3871.6046 kcal/mol (3865.4001 without restraints) Performing minimization step: 2822. Total energy = 3869.8128 kcal/mol (3863.6105 without restraints) Performing minimization step: 2823. Total energy = 3868.0227 kcal/mol (3861.8226 without restraints) Performing minimization step: 2824. Total energy = 3866.2341 kcal/mol (3860.0362 without restraints) Performing minimization step: 2825. Total energy = 3864.4468 kcal/mol (3858.2512 without restraints) Performing minimization step: 2826. Total energy = 3862.6611 kcal/mol (3856.4675 without restraints) Performing minimization step: 2827. Total energy = 3860.8767 kcal/mol (3854.6854 without restraints) Performing minimization step: 2828. Total energy = 3859.0941 kcal/mol (3852.9049 without restraints) Performing minimization step: 2829. Total energy = 3857.3127 kcal/mol (3851.1257 without restraints) Performing minimization step: 2830. Total energy = 3855.5329 kcal/mol (3849.3482 without restraints) Performing minimization step: 2831. Total energy = 3853.7547 kcal/mol (3847.5722 without restraints) Performing minimization step: 2832. Total energy = 3851.9779 kcal/mol (3845.7975 without restraints) Performing minimization step: 2833. Total energy = 3850.2026 kcal/mol (3844.0246 without restraints) Performing minimization step: 2834. Total energy = 3848.4292 kcal/mol (3842.2529 without restraints) Performing minimization step: 2835. Total energy = 3846.6565 kcal/mol (3840.4826 without restraints) Performing minimization step: 2836. Total energy = 3844.8855 kcal/mol (3838.7137 without restraints) Performing minimization step: 2837. Total energy = 3843.1159 kcal/mol (3836.9464 without restraints) Performing minimization step: 2838. Total energy = 3841.3478 kcal/mol (3835.1805 without restraints) Performing minimization step: 2839. Total energy = 3839.5810 kcal/mol (3833.4158 without restraints) Performing minimization step: 2840. Total energy = 3837.8159 kcal/mol (3831.6529 without restraints) Performing minimization step: 2841. Total energy = 3836.0529 kcal/mol (3829.8921 without restraints) Performing minimization step: 2842. Total energy = 3834.2909 kcal/mol (3828.1322 without restraints) Performing minimization step: 2843. Total energy = 3832.5303 kcal/mol (3826.3740 without restraints) Performing minimization step: 2844. Total energy = 3830.7712 kcal/mol (3824.6169 without restraints) Performing minimization step: 2845. Total energy = 3829.0134 kcal/mol (3822.8612 without restraints) Performing minimization step: 2846. Total energy = 3827.2572 kcal/mol (3821.1072 without restraints) Performing minimization step: 2847. Total energy = 3825.5023 kcal/mol (3819.3544 without restraints) Performing minimization step: 2848. Total energy = 3823.7493 kcal/mol (3817.6036 without restraints) Performing minimization step: 2849. Total energy = 3821.9978 kcal/mol (3815.8542 without restraints) Performing minimization step: 2850. Total energy = 3820.2473 kcal/mol (3814.1059 without restraints) Performing minimization step: 2851. Total energy = 3818.4984 kcal/mol (3812.3591 without restraints) Performing minimization step: 2852. Total energy = 3816.7508 kcal/mol (3810.6137 without restraints) Performing minimization step: 2853. Total energy = 3815.0046 kcal/mol (3808.8697 without restraints) Performing minimization step: 2854. Total energy = 3813.2599 kcal/mol (3807.1271 without restraints) Performing minimization step: 2855. Total energy = 3811.5166 kcal/mol (3805.3860 without restraints) Performing minimization step: 2856. Total energy = 3809.7750 kcal/mol (3803.6465 without restraints) Performing minimization step: 2857. Total energy = 3808.0347 kcal/mol (3801.9085 without restraints) Performing minimization step: 2858. Total energy = 3806.2962 kcal/mol (3800.1721 without restraints) Performing minimization step: 2859. Total energy = 3804.5585 kcal/mol (3798.4365 without restraints) Performing minimization step: 2860. Total energy = 3802.8225 kcal/mol (3796.7026 without restraints) Performing minimization step: 2861. Total energy = 3801.0878 kcal/mol (3794.9701 without restraints) Performing minimization step: 2862. Total energy = 3799.3550 kcal/mol (3793.2395 without restraints) Performing minimization step: 2863. Total energy = 3797.6233 kcal/mol (3791.5099 without restraints) Performing minimization step: 2864. Total energy = 3795.8930 kcal/mol (3789.7818 without restraints) Performing minimization step: 2865. Total energy = 3794.1642 kcal/mol (3788.0550 without restraints) Performing minimization step: 2866. Total energy = 3792.4368 kcal/mol (3786.3298 without restraints) Performing minimization step: 2867. Total energy = 3790.7107 kcal/mol (3784.6059 without restraints) Performing minimization step: 2868. Total energy = 3788.9862 kcal/mol (3782.8835 without restraints) Performing minimization step: 2869. Total energy = 3787.2632 kcal/mol (3781.1626 without restraints) Performing minimization step: 2870. Total energy = 3785.5417 kcal/mol (3779.4433 without restraints) Performing minimization step: 2871. Total energy = 3783.8214 kcal/mol (3777.7251 without restraints) Performing minimization step: 2872. Total energy = 3782.1026 kcal/mol (3776.0084 without restraints) Performing minimization step: 2873. Total energy = 3780.3854 kcal/mol (3774.2935 without restraints) Performing minimization step: 2874. Total energy = 3778.6695 kcal/mol (3772.5796 without restraints) Performing minimization step: 2875. Total energy = 3776.9549 kcal/mol (3770.8671 without restraints) Performing minimization step: 2876. Total energy = 3775.2416 kcal/mol (3769.1560 without restraints) Performing minimization step: 2877. Total energy = 3773.5296 kcal/mol (3767.4461 without restraints) Performing minimization step: 2878. Total energy = 3771.8194 kcal/mol (3765.7380 without restraints) Performing minimization step: 2879. Total energy = 3770.1106 kcal/mol (3764.0314 without restraints) Performing minimization step: 2880. Total energy = 3768.4034 kcal/mol (3762.3264 without restraints) Performing minimization step: 2881. Total energy = 3766.6974 kcal/mol (3760.6224 without restraints) Performing minimization step: 2882. Total energy = 3764.9932 kcal/mol (3758.9204 without restraints) Performing minimization step: 2883. Total energy = 3763.2905 kcal/mol (3757.2197 without restraints) Performing minimization step: 2884. Total energy = 3761.5888 kcal/mol (3755.5204 without restraints) Performing minimization step: 2885. Total energy = 3759.8888 kcal/mol (3753.8225 without restraints) Performing minimization step: 2886. Total energy = 3758.1902 kcal/mol (3752.1258 without restraints) Performing minimization step: 2887. Total energy = 3756.4926 kcal/mol (3750.4303 without restraints) Performing minimization step: 2888. Total energy = 3754.7967 kcal/mol (3748.7366 without restraints) Performing minimization step: 2889. Total energy = 3753.1020 kcal/mol (3747.0439 without restraints) Performing minimization step: 2890. Total energy = 3751.4089 kcal/mol (3745.3529 without restraints) Performing minimization step: 2891. Total energy = 3749.7169 kcal/mol (3743.6630 without restraints) Performing minimization step: 2892. Total energy = 3748.0262 kcal/mol (3741.9745 without restraints) Performing minimization step: 2893. Total energy = 3746.3374 kcal/mol (3740.2878 without restraints) Performing minimization step: 2894. Total energy = 3744.6500 kcal/mol (3738.6025 without restraints) Performing minimization step: 2895. Total energy = 3742.9638 kcal/mol (3736.9184 without restraints) Performing minimization step: 2896. Total energy = 3741.2787 kcal/mol (3735.2354 without restraints) Performing minimization step: 2897. Total energy = 3739.5951 kcal/mol (3733.5539 without restraints) Performing minimization step: 2898. Total energy = 3737.9128 kcal/mol (3731.8737 without restraints) Performing minimization step: 2899. Total energy = 3736.2323 kcal/mol (3730.1954 without restraints) Performing minimization step: 2900. Total energy = 3734.5532 kcal/mol (3728.5184 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 3732.8749 kcal/mol (3726.8421 without restraints) Performing minimization step: 2902. Total energy = 3731.1983 kcal/mol (3725.1676 without restraints) Performing minimization step: 2903. Total energy = 3729.5233 kcal/mol (3723.4947 without restraints) Performing minimization step: 2904. Total energy = 3727.8495 kcal/mol (3721.8231 without restraints) Performing minimization step: 2905. Total energy = 3726.1770 kcal/mol (3720.1526 without restraints) Performing minimization step: 2906. Total energy = 3724.5056 kcal/mol (3718.4833 without restraints) Performing minimization step: 2907. Total energy = 3722.8358 kcal/mol (3716.8156 without restraints) Performing minimization step: 2908. Total energy = 3721.1675 kcal/mol (3715.1494 without restraints) Performing minimization step: 2909. Total energy = 3719.5005 kcal/mol (3713.4844 without restraints) Performing minimization step: 2910. Total energy = 3717.8345 kcal/mol (3711.8206 without restraints) Performing minimization step: 2911. Total energy = 3716.1704 kcal/mol (3710.1585 without restraints) Performing minimization step: 2912. Total energy = 3714.5072 kcal/mol (3708.4974 without restraints) Performing minimization step: 2913. Total energy = 3712.8456 kcal/mol (3706.8379 without restraints) Performing minimization step: 2914. Total energy = 3711.1858 kcal/mol (3705.1803 without restraints) Performing minimization step: 2915. Total energy = 3709.5271 kcal/mol (3703.5236 without restraints) Performing minimization step: 2916. Total energy = 3707.8698 kcal/mol (3701.8684 without restraints) Performing minimization step: 2917. Total energy = 3706.2142 kcal/mol (3700.2151 without restraints) Performing minimization step: 2918. Total energy = 3704.5601 kcal/mol (3698.5628 without restraints) Performing minimization step: 2919. Total energy = 3702.9068 kcal/mol (3696.9117 without restraints) Performing minimization step: 2920. Total energy = 3701.2552 kcal/mol (3695.2623 without restraints) Performing minimization step: 2921. Total energy = 3699.6047 kcal/mol (3693.6137 without restraints) Performing minimization step: 2922. Total energy = 3697.9554 kcal/mol (3691.9666 without restraints) Performing minimization step: 2923. Total energy = 3696.3073 kcal/mol (3690.3204 without restraints) Performing minimization step: 2924. Total energy = 3694.6607 kcal/mol (3688.6758 without restraints) Performing minimization step: 2925. Total energy = 3693.0153 kcal/mol (3687.0326 without restraints) Performing minimization step: 2926. Total energy = 3691.3718 kcal/mol (3685.3911 without restraints) Performing minimization step: 2927. Total energy = 3689.7290 kcal/mol (3683.7504 without restraints) Performing minimization step: 2928. Total energy = 3688.0875 kcal/mol (3682.1110 without restraints) Performing minimization step: 2929. Total energy = 3686.4476 kcal/mol (3680.4731 without restraints) Performing minimization step: 2930. Total energy = 3684.8092 kcal/mol (3678.8369 without restraints) Performing minimization step: 2931. Total energy = 3683.1722 kcal/mol (3677.2019 without restraints) Performing minimization step: 2932. Total energy = 3681.5364 kcal/mol (3675.5681 without restraints) Performing minimization step: 2933. Total energy = 3679.9018 kcal/mol (3673.9357 without restraints) Performing minimization step: 2934. Total energy = 3678.2688 kcal/mol (3672.3047 without restraints) Performing minimization step: 2935. Total energy = 3676.6370 kcal/mol (3670.6749 without restraints) Performing minimization step: 2936. Total energy = 3675.0067 kcal/mol (3669.0467 without restraints) Performing minimization step: 2937. Total energy = 3673.3774 kcal/mol (3667.4195 without restraints) Performing minimization step: 2938. Total energy = 3671.7498 kcal/mol (3665.7939 without restraints) Performing minimization step: 2939. Total energy = 3670.1235 kcal/mol (3664.1697 without restraints) Performing minimization step: 2940. Total energy = 3668.4984 kcal/mol (3662.5466 without restraints) Performing minimization step: 2941. Total energy = 3666.8749 kcal/mol (3660.9252 without restraints) Performing minimization step: 2942. Total energy = 3665.2526 kcal/mol (3659.3050 without restraints) Performing minimization step: 2943. Total energy = 3663.6320 kcal/mol (3657.6864 without restraints) Performing minimization step: 2944. Total energy = 3662.0126 kcal/mol (3656.0691 without restraints) Performing minimization step: 2945. Total energy = 3660.3944 kcal/mol (3654.4529 without restraints) Performing minimization step: 2946. Total energy = 3658.7772 kcal/mol (3652.8377 without restraints) Performing minimization step: 2947. Total energy = 3657.1615 kcal/mol (3651.2241 without restraints) Performing minimization step: 2948. Total energy = 3655.5472 kcal/mol (3649.6118 without restraints) Performing minimization step: 2949. Total energy = 3653.9341 kcal/mol (3648.0008 without restraints) Performing minimization step: 2950. Total energy = 3652.3222 kcal/mol (3646.3909 without restraints) Performing minimization step: 2951. Total energy = 3650.7115 kcal/mol (3644.7823 without restraints) Performing minimization step: 2952. Total energy = 3649.1022 kcal/mol (3643.1750 without restraints) Performing minimization step: 2953. Total energy = 3647.4944 kcal/mol (3641.5692 without restraints) Performing minimization step: 2954. Total energy = 3645.8876 kcal/mol (3639.9644 without restraints) Performing minimization step: 2955. Total energy = 3644.2822 kcal/mol (3638.3611 without restraints) Performing minimization step: 2956. Total energy = 3642.6781 kcal/mol (3636.7591 without restraints) Performing minimization step: 2957. Total energy = 3641.0754 kcal/mol (3635.1584 without restraints) Performing minimization step: 2958. Total energy = 3639.4740 kcal/mol (3633.5591 without restraints) Performing minimization step: 2959. Total energy = 3637.8739 kcal/mol (3631.9610 without restraints) Performing minimization step: 2960. Total energy = 3636.2753 kcal/mol (3630.3643 without restraints) Performing minimization step: 2961. Total energy = 3634.6778 kcal/mol (3628.7689 without restraints) Performing minimization step: 2962. Total energy = 3633.0815 kcal/mol (3627.1747 without restraints) Performing minimization step: 2963. Total energy = 3631.4868 kcal/mol (3625.5820 without restraints) Performing minimization step: 2964. Total energy = 3629.8935 kcal/mol (3623.9907 without restraints) Performing minimization step: 2965. Total energy = 3628.3013 kcal/mol (3622.4004 without restraints) Performing minimization step: 2966. Total energy = 3626.7101 kcal/mol (3620.8114 without restraints) Performing minimization step: 2967. Total energy = 3625.1204 kcal/mol (3619.2237 without restraints) Performing minimization step: 2968. Total energy = 3623.5320 kcal/mol (3617.6372 without restraints) Performing minimization step: 2969. Total energy = 3621.9449 kcal/mol (3616.0522 without restraints) Performing minimization step: 2970. Total energy = 3620.3592 kcal/mol (3614.4686 without restraints) Performing minimization step: 2971. Total energy = 3618.7747 kcal/mol (3612.8860 without restraints) Performing minimization step: 2972. Total energy = 3617.1914 kcal/mol (3611.3047 without restraints) Performing minimization step: 2973. Total energy = 3615.6093 kcal/mol (3609.7247 without restraints) Performing minimization step: 2974. Total energy = 3614.0289 kcal/mol (3608.1464 without restraints) Performing minimization step: 2975. Total energy = 3612.4495 kcal/mol (3606.5689 without restraints) Performing minimization step: 2976. Total energy = 3610.8720 kcal/mol (3604.9936 without restraints) Performing minimization step: 2977. Total energy = 3609.2957 kcal/mol (3603.4192 without restraints) Performing minimization step: 2978. Total energy = 3607.7203 kcal/mol (3601.8458 without restraints) Performing minimization step: 2979. Total energy = 3606.1467 kcal/mol (3600.2741 without restraints) Performing minimization step: 2980. Total energy = 3604.5739 kcal/mol (3598.7033 without restraints) Performing minimization step: 2981. Total energy = 3603.0023 kcal/mol (3597.1338 without restraints) Performing minimization step: 2982. Total energy = 3601.4318 kcal/mol (3595.5652 without restraints) Performing minimization step: 2983. Total energy = 3599.8631 kcal/mol (3593.9986 without restraints) Performing minimization step: 2984. Total energy = 3598.2954 kcal/mol (3592.4329 without restraints) Performing minimization step: 2985. Total energy = 3596.7288 kcal/mol (3590.8682 without restraints) Performing minimization step: 2986. Total energy = 3595.1637 kcal/mol (3589.3052 without restraints) Performing minimization step: 2987. Total energy = 3593.5995 kcal/mol (3587.7431 without restraints) Performing minimization step: 2988. Total energy = 3592.0369 kcal/mol (3586.1825 without restraints) Performing minimization step: 2989. Total energy = 3590.4754 kcal/mol (3584.6229 without restraints) Performing minimization step: 2990. Total energy = 3588.9150 kcal/mol (3583.0645 without restraints) Performing minimization step: 2991. Total energy = 3587.3560 kcal/mol (3581.5076 without restraints) Performing minimization step: 2992. Total energy = 3585.7985 kcal/mol (3579.9520 without restraints) Performing minimization step: 2993. Total energy = 3584.2419 kcal/mol (3578.3973 without restraints) Performing minimization step: 2994. Total energy = 3582.6871 kcal/mol (3576.8446 without restraints) Performing minimization step: 2995. Total energy = 3581.1333 kcal/mol (3575.2927 without restraints) Performing minimization step: 2996. Total energy = 3579.5805 kcal/mol (3573.7419 without restraints) Performing minimization step: 2997. Total energy = 3578.0289 kcal/mol (3572.1923 without restraints) Performing minimization step: 2998. Total energy = 3576.4788 kcal/mol (3570.6443 without restraints) Performing minimization step: 2999. Total energy = 3574.9298 kcal/mol (3569.0972 without restraints) Performing minimization step: 3000. Total energy = 3573.3820 kcal/mol (3567.5514 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 3571.8359 kcal/mol (3566.0072 without restraints) Performing minimization step: 3002. Total energy = 3570.2905 kcal/mol (3564.4638 without restraints) Performing minimization step: 3003. Total energy = 3568.7468 kcal/mol (3562.9221 without restraints) Performing minimization step: 3004. Total energy = 3567.2043 kcal/mol (3561.3816 without restraints) Performing minimization step: 3005. Total energy = 3565.6625 kcal/mol (3559.8418 without restraints) Performing minimization step: 3006. Total energy = 3564.1222 kcal/mol (3558.3034 without restraints) Performing minimization step: 3007. Total energy = 3562.5836 kcal/mol (3556.7669 without restraints) Performing minimization step: 3008. Total energy = 3561.0463 kcal/mol (3555.2317 without restraints) Performing minimization step: 3009. Total energy = 3559.5100 kcal/mol (3553.6972 without restraints) Performing minimization step: 3010. Total energy = 3557.9748 kcal/mol (3552.1639 without restraints) Performing minimization step: 3011. Total energy = 3556.4408 kcal/mol (3550.6319 without restraints) Performing minimization step: 3012. Total energy = 3554.9078 kcal/mol (3549.1009 without restraints) Performing minimization step: 3013. Total energy = 3553.3763 kcal/mol (3547.5714 without restraints) Performing minimization step: 3014. Total energy = 3551.8458 kcal/mol (3546.0429 without restraints) Performing minimization step: 3015. Total energy = 3550.3166 kcal/mol (3544.5156 without restraints) Performing minimization step: 3016. Total energy = 3548.7885 kcal/mol (3542.9895 without restraints) Performing minimization step: 3017. Total energy = 3547.2619 kcal/mol (3541.4649 without restraints) Performing minimization step: 3018. Total energy = 3545.7362 kcal/mol (3539.9410 without restraints) Performing minimization step: 3019. Total energy = 3544.2118 kcal/mol (3538.4186 without restraints) Performing minimization step: 3020. Total energy = 3542.6886 kcal/mol (3536.8974 without restraints) Performing minimization step: 3021. Total energy = 3541.1668 kcal/mol (3535.3776 without restraints) Performing minimization step: 3022. Total energy = 3539.6461 kcal/mol (3533.8589 without restraints) Performing minimization step: 3023. Total energy = 3538.1266 kcal/mol (3532.3413 without restraints) Performing minimization step: 3024. Total energy = 3536.6084 kcal/mol (3530.8250 without restraints) Performing minimization step: 3025. Total energy = 3535.0911 kcal/mol (3529.3096 without restraints) Performing minimization step: 3026. Total energy = 3533.5757 kcal/mol (3527.7963 without restraints) Performing minimization step: 3027. Total energy = 3532.0614 kcal/mol (3526.2838 without restraints) Performing minimization step: 3028. Total energy = 3530.5480 kcal/mol (3524.7724 without restraints) Performing minimization step: 3029. Total energy = 3529.0357 kcal/mol (3523.2621 without restraints) Performing minimization step: 3030. Total energy = 3527.5249 kcal/mol (3521.7532 without restraints) Performing minimization step: 3031. Total energy = 3526.0150 kcal/mol (3520.2453 without restraints) Performing minimization step: 3032. Total energy = 3524.5060 kcal/mol (3518.7382 without restraints) Performing minimization step: 3033. Total energy = 3522.9990 kcal/mol (3517.2331 without restraints) Performing minimization step: 3034. Total energy = 3521.4927 kcal/mol (3515.7288 without restraints) Performing minimization step: 3035. Total energy = 3519.9878 kcal/mol (3514.2259 without restraints) Performing minimization step: 3036. Total energy = 3518.4839 kcal/mol (3512.7239 without restraints) Performing minimization step: 3037. Total energy = 3516.9813 kcal/mol (3511.2233 without restraints) Performing minimization step: 3038. Total energy = 3515.4801 kcal/mol (3509.7241 without restraints) Performing minimization step: 3039. Total energy = 3513.9800 kcal/mol (3508.2258 without restraints) Performing minimization step: 3040. Total energy = 3512.4814 kcal/mol (3506.7293 without restraints) Performing minimization step: 3041. Total energy = 3510.9838 kcal/mol (3505.2335 without restraints) Performing minimization step: 3042. Total energy = 3509.4873 kcal/mol (3503.7389 without restraints) Performing minimization step: 3043. Total energy = 3507.9920 kcal/mol (3502.2456 without restraints) Performing minimization step: 3044. Total energy = 3506.4980 kcal/mol (3500.7534 without restraints) Performing minimization step: 3045. Total energy = 3505.0048 kcal/mol (3499.2622 without restraints) Performing minimization step: 3046. Total energy = 3503.5129 kcal/mol (3497.7723 without restraints) Performing minimization step: 3047. Total energy = 3502.0222 kcal/mol (3496.2835 without restraints) Performing minimization step: 3048. Total energy = 3500.5327 kcal/mol (3494.7959 without restraints) Performing minimization step: 3049. Total energy = 3499.0445 kcal/mol (3493.3097 without restraints) Performing minimization step: 3050. Total energy = 3497.5573 kcal/mol (3491.8243 without restraints) Performing minimization step: 3051. Total energy = 3496.0714 kcal/mol (3490.3403 without restraints) Performing minimization step: 3052. Total energy = 3494.5865 kcal/mol (3488.8574 without restraints) Performing minimization step: 3053. Total energy = 3493.1028 kcal/mol (3487.3756 without restraints) Performing minimization step: 3054. Total energy = 3491.6203 kcal/mol (3485.8950 without restraints) Performing minimization step: 3055. Total energy = 3490.1389 kcal/mol (3484.4155 without restraints) Performing minimization step: 3056. Total energy = 3488.6591 kcal/mol (3482.9379 without restraints) Performing minimization step: 3057. Total energy = 3487.1801 kcal/mol (3481.4604 without restraints) Performing minimization step: 3058. Total energy = 3485.7021 kcal/mol (3479.9845 without restraints) Performing minimization step: 3059. Total energy = 3484.2257 kcal/mol (3478.5101 without restraints) Performing minimization step: 3060. Total energy = 3482.7506 kcal/mol (3477.0369 without restraints) Performing minimization step: 3061. Total energy = 3481.2763 kcal/mol (3475.5645 without restraints) Performing minimization step: 3062. Total energy = 3479.8030 kcal/mol (3474.0930 without restraints) Performing minimization step: 3063. Total energy = 3478.3311 kcal/mol (3472.6231 without restraints) Performing minimization step: 3064. Total energy = 3476.8603 kcal/mol (3471.1541 without restraints) Performing minimization step: 3065. Total energy = 3475.3908 kcal/mol (3469.6866 without restraints) Performing minimization step: 3066. Total energy = 3473.9225 kcal/mol (3468.2202 without restraints) Performing minimization step: 3067. Total energy = 3472.4558 kcal/mol (3466.7554 without restraints) Performing minimization step: 3068. Total energy = 3470.9895 kcal/mol (3465.2910 without restraints) Performing minimization step: 3069. Total energy = 3469.5243 kcal/mol (3463.8277 without restraints) Performing minimization step: 3070. Total energy = 3468.0601 kcal/mol (3462.3654 without restraints) Performing minimization step: 3071. Total energy = 3466.5972 kcal/mol (3460.9044 without restraints) Performing minimization step: 3072. Total energy = 3465.1356 kcal/mol (3459.4448 without restraints) Performing minimization step: 3073. Total energy = 3463.6758 kcal/mol (3457.9868 without restraints) Performing minimization step: 3074. Total energy = 3462.2170 kcal/mol (3456.5299 without restraints) Performing minimization step: 3075. Total energy = 3460.7591 kcal/mol (3455.0739 without restraints) Performing minimization step: 3076. Total energy = 3459.3020 kcal/mol (3453.6186 without restraints) Performing minimization step: 3077. Total energy = 3457.8460 kcal/mol (3452.1647 without restraints) Performing minimization step: 3078. Total energy = 3456.3913 kcal/mol (3450.7117 without restraints) Performing minimization step: 3079. Total energy = 3454.9379 kcal/mol (3449.2604 without restraints) Performing minimization step: 3080. Total energy = 3453.4853 kcal/mol (3447.8094 without restraints) Performing minimization step: 3081. Total energy = 3452.0338 kcal/mol (3446.3600 without restraints) Performing minimization step: 3082. Total energy = 3450.5838 kcal/mol (3444.9118 without restraints) Performing minimization step: 3083. Total energy = 3449.1350 kcal/mol (3443.4649 without restraints) Performing minimization step: 3084. Total energy = 3447.6869 kcal/mol (3442.0187 without restraints) Performing minimization step: 3085. Total energy = 3446.2403 kcal/mol (3440.5740 without restraints) Performing minimization step: 3086. Total energy = 3444.7945 kcal/mol (3439.1301 without restraints) Performing minimization step: 3087. Total energy = 3443.3498 kcal/mol (3437.6872 without restraints) Performing minimization step: 3088. Total energy = 3441.9062 kcal/mol (3436.2455 without restraints) Performing minimization step: 3089. Total energy = 3440.4633 kcal/mol (3434.8045 without restraints) Performing minimization step: 3090. Total energy = 3439.0224 kcal/mol (3433.3654 without restraints) Performing minimization step: 3091. Total energy = 3437.5824 kcal/mol (3431.9275 without restraints) Performing minimization step: 3092. Total energy = 3436.1437 kcal/mol (3430.4905 without restraints) Performing minimization step: 3093. Total energy = 3434.7059 kcal/mol (3429.0545 without restraints) Performing minimization step: 3094. Total energy = 3433.2692 kcal/mol (3427.6197 without restraints) Performing minimization step: 3095. Total energy = 3431.8334 kcal/mol (3426.1858 without restraints) Performing minimization step: 3096. Total energy = 3430.3987 kcal/mol (3424.7530 without restraints) Performing minimization step: 3097. Total energy = 3428.9653 kcal/mol (3423.3215 without restraints) Performing minimization step: 3098. Total energy = 3427.5329 kcal/mol (3421.8909 without restraints) Performing minimization step: 3099. Total energy = 3426.1015 kcal/mol (3420.4614 without restraints) Performing minimization step: 3100. Total energy = 3424.6712 kcal/mol (3419.0330 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 3423.2426 kcal/mol (3417.6063 without restraints) Performing minimization step: 3102. Total energy = 3421.8146 kcal/mol (3416.1801 without restraints) Performing minimization step: 3103. Total energy = 3420.3877 kcal/mol (3414.7551 without restraints) Performing minimization step: 3104. Total energy = 3418.9619 kcal/mol (3413.3311 without restraints) Performing minimization step: 3105. Total energy = 3417.5374 kcal/mol (3411.9084 without restraints) Performing minimization step: 3106. Total energy = 3416.1138 kcal/mol (3410.4867 without restraints) Performing minimization step: 3107. Total energy = 3414.6914 kcal/mol (3409.0662 without restraints) Performing minimization step: 3108. Total energy = 3413.2699 kcal/mol (3407.6466 without restraints) Performing minimization step: 3109. Total energy = 3411.8498 kcal/mol (3406.2283 without restraints) Performing minimization step: 3110. Total energy = 3410.4306 kcal/mol (3404.8109 without restraints) Performing minimization step: 3111. Total energy = 3409.0123 kcal/mol (3403.3945 without restraints) Performing minimization step: 3112. Total energy = 3407.5953 kcal/mol (3401.9793 without restraints) Performing minimization step: 3113. Total energy = 3406.1797 kcal/mol (3400.5659 without restraints) Performing minimization step: 3114. Total energy = 3404.7654 kcal/mol (3399.1533 without restraints) Performing minimization step: 3115. Total energy = 3403.3517 kcal/mol (3397.7413 without restraints) Performing minimization step: 3116. Total energy = 3401.9389 kcal/mol (3396.3303 without restraints) Performing minimization step: 3117. Total energy = 3400.5275 kcal/mol (3394.9209 without restraints) Performing minimization step: 3118. Total energy = 3399.1170 kcal/mol (3393.5121 without restraints) Performing minimization step: 3119. Total energy = 3397.7075 kcal/mol (3392.1044 without restraints) Performing minimization step: 3120. Total energy = 3396.2990 kcal/mol (3390.6978 without restraints) Performing minimization step: 3121. Total energy = 3394.8913 kcal/mol (3389.2921 without restraints) Performing minimization step: 3122. Total energy = 3393.4852 kcal/mol (3387.8876 without restraints) Performing minimization step: 3123. Total energy = 3392.0803 kcal/mol (3386.4846 without restraints) Performing minimization step: 3124. Total energy = 3390.6761 kcal/mol (3385.0823 without restraints) Performing minimization step: 3125. Total energy = 3389.2730 kcal/mol (3383.6810 without restraints) Performing minimization step: 3126. Total energy = 3387.8711 kcal/mol (3382.2810 without restraints) Performing minimization step: 3127. Total energy = 3386.4703 kcal/mol (3380.8820 without restraints) Performing minimization step: 3128. Total energy = 3385.0702 kcal/mol (3379.4837 without restraints) Performing minimization step: 3129. Total energy = 3383.6714 kcal/mol (3378.0868 without restraints) Performing minimization step: 3130. Total energy = 3382.2737 kcal/mol (3376.6908 without restraints) Performing minimization step: 3131. Total energy = 3380.8778 kcal/mol (3375.2969 without restraints) Performing minimization step: 3132. Total energy = 3379.4828 kcal/mol (3373.9037 without restraints) Performing minimization step: 3133. Total energy = 3378.0884 kcal/mol (3372.5112 without restraints) Performing minimization step: 3134. Total energy = 3376.6952 kcal/mol (3371.1197 without restraints) Performing minimization step: 3135. Total energy = 3375.3027 kcal/mol (3369.7290 without restraints) Performing minimization step: 3136. Total energy = 3373.9113 kcal/mol (3368.3394 without restraints) Performing minimization step: 3137. Total energy = 3372.5209 kcal/mol (3366.9508 without restraints) Performing minimization step: 3138. Total energy = 3371.1315 kcal/mol (3365.5633 without restraints) Performing minimization step: 3139. Total energy = 3369.7434 kcal/mol (3364.1770 without restraints) Performing minimization step: 3140. Total energy = 3368.3560 kcal/mol (3362.7913 without restraints) Performing minimization step: 3141. Total energy = 3366.9696 kcal/mol (3361.4068 without restraints) Performing minimization step: 3142. Total energy = 3365.5847 kcal/mol (3360.0237 without restraints) Performing minimization step: 3143. Total energy = 3364.2007 kcal/mol (3358.6415 without restraints) Performing minimization step: 3144. Total energy = 3362.8176 kcal/mol (3357.2602 without restraints) Performing minimization step: 3145. Total energy = 3361.4354 kcal/mol (3355.8799 without restraints) Performing minimization step: 3146. Total energy = 3360.0545 kcal/mol (3354.5008 without restraints) Performing minimization step: 3147. Total energy = 3358.6743 kcal/mol (3353.1224 without restraints) Performing minimization step: 3148. Total energy = 3357.2955 kcal/mol (3351.7455 without restraints) Performing minimization step: 3149. Total energy = 3355.9176 kcal/mol (3350.3693 without restraints) Performing minimization step: 3150. Total energy = 3354.5411 kcal/mol (3348.9946 without restraints) Performing minimization step: 3151. Total energy = 3353.1650 kcal/mol (3347.6204 without restraints) Performing minimization step: 3152. Total energy = 3351.7902 kcal/mol (3346.2473 without restraints) Performing minimization step: 3153. Total energy = 3350.4164 kcal/mol (3344.8754 without restraints) Performing minimization step: 3154. Total energy = 3349.0441 kcal/mol (3343.5048 without restraints) Performing minimization step: 3155. Total energy = 3347.6725 kcal/mol (3342.1351 without restraints) Performing minimization step: 3156. Total energy = 3346.3024 kcal/mol (3340.7667 without restraints) Performing minimization step: 3157. Total energy = 3344.9326 kcal/mol (3339.3987 without restraints) Performing minimization step: 3158. Total energy = 3343.5641 kcal/mol (3338.0320 without restraints) Performing minimization step: 3159. Total energy = 3342.1965 kcal/mol (3336.6662 without restraints) Performing minimization step: 3160. Total energy = 3340.8300 kcal/mol (3335.3015 without restraints) Performing minimization step: 3161. Total energy = 3339.4646 kcal/mol (3333.9379 without restraints) Performing minimization step: 3162. Total energy = 3338.0999 kcal/mol (3332.5750 without restraints) Performing minimization step: 3163. Total energy = 3336.7362 kcal/mol (3331.2131 without restraints) Performing minimization step: 3164. Total energy = 3335.3738 kcal/mol (3329.8526 without restraints) Performing minimization step: 3165. Total energy = 3334.0125 kcal/mol (3328.4930 without restraints) Performing minimization step: 3166. Total energy = 3332.6519 kcal/mol (3327.1342 without restraints) Performing minimization step: 3167. Total energy = 3331.2921 kcal/mol (3325.7762 without restraints) Performing minimization step: 3168. Total energy = 3329.9336 kcal/mol (3324.4195 without restraints) Performing minimization step: 3169. Total energy = 3328.5765 kcal/mol (3323.0643 without restraints) Performing minimization step: 3170. Total energy = 3327.2201 kcal/mol (3321.7095 without restraints) Performing minimization step: 3171. Total energy = 3325.8646 kcal/mol (3320.3559 without restraints) Performing minimization step: 3172. Total energy = 3324.5102 kcal/mol (3319.0031 without restraints) Performing minimization step: 3173. Total energy = 3323.1565 kcal/mol (3317.6513 without restraints) Performing minimization step: 3174. Total energy = 3321.8045 kcal/mol (3316.3011 without restraints) Performing minimization step: 3175. Total energy = 3320.4536 kcal/mol (3314.9519 without restraints) Performing minimization step: 3176. Total energy = 3319.1032 kcal/mol (3313.6032 without restraints) Performing minimization step: 3177. Total energy = 3317.7538 kcal/mol (3312.2556 without restraints) Performing minimization step: 3178. Total energy = 3316.4052 kcal/mol (3310.9088 without restraints) Performing minimization step: 3179. Total energy = 3315.0575 kcal/mol (3309.5629 without restraints) Performing minimization step: 3180. Total energy = 3313.7108 kcal/mol (3308.2180 without restraints) Performing minimization step: 3181. Total energy = 3312.3652 kcal/mol (3306.8741 without restraints) Performing minimization step: 3182. Total energy = 3311.0205 kcal/mol (3305.5312 without restraints) Performing minimization step: 3183. Total energy = 3309.6772 kcal/mol (3304.1897 without restraints) Performing minimization step: 3184. Total energy = 3308.3349 kcal/mol (3302.8491 without restraints) Performing minimization step: 3185. Total energy = 3306.9933 kcal/mol (3301.5093 without restraints) Performing minimization step: 3186. Total energy = 3305.6528 kcal/mol (3300.1707 without restraints) Performing minimization step: 3187. Total energy = 3304.3130 kcal/mol (3298.8324 without restraints) Performing minimization step: 3188. Total energy = 3302.9745 kcal/mol (3297.4958 without restraints) Performing minimization step: 3189. Total energy = 3301.6373 kcal/mol (3296.1603 without restraints) Performing minimization step: 3190. Total energy = 3300.3007 kcal/mol (3294.8255 without restraints) Performing minimization step: 3191. Total energy = 3298.9651 kcal/mol (3293.4917 without restraints) Performing minimization step: 3192. Total energy = 3297.6303 kcal/mol (3292.1586 without restraints) Performing minimization step: 3193. Total energy = 3296.2968 kcal/mol (3290.8268 without restraints) Performing minimization step: 3194. Total energy = 3294.9638 kcal/mol (3289.4957 without restraints) Performing minimization step: 3195. Total energy = 3293.6322 kcal/mol (3288.1658 without restraints) Performing minimization step: 3196. Total energy = 3292.3013 kcal/mol (3286.8367 without restraints) Performing minimization step: 3197. Total energy = 3290.9715 kcal/mol (3285.5085 without restraints) Performing minimization step: 3198. Total energy = 3289.6421 kcal/mol (3284.1809 without restraints) Performing minimization step: 3199. Total energy = 3288.3139 kcal/mol (3282.8545 without restraints) Performing minimization step: 3200. Total energy = 3286.9871 kcal/mol (3281.5295 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 3285.6609 kcal/mol (3280.2049 without restraints) Performing minimization step: 3202. Total energy = 3284.3357 kcal/mol (3278.8815 without restraints) Performing minimization step: 3203. Total energy = 3283.0113 kcal/mol (3277.5588 without restraints) Performing minimization step: 3204. Total energy = 3281.6884 kcal/mol (3276.2377 without restraints) Performing minimization step: 3205. Total energy = 3280.3660 kcal/mol (3274.9170 without restraints) Performing minimization step: 3206. Total energy = 3279.0445 kcal/mol (3273.5972 without restraints) Performing minimization step: 3207. Total energy = 3277.7239 kcal/mol (3272.2784 without restraints) Performing minimization step: 3208. Total energy = 3276.4044 kcal/mol (3270.9605 without restraints) Performing minimization step: 3209. Total energy = 3275.0855 kcal/mol (3269.6435 without restraints) Performing minimization step: 3210. Total energy = 3273.7677 kcal/mol (3268.3275 without restraints) Performing minimization step: 3211. Total energy = 3272.4515 kcal/mol (3267.0130 without restraints) Performing minimization step: 3212. Total energy = 3271.1359 kcal/mol (3265.6991 without restraints) Performing minimization step: 3213. Total energy = 3269.8214 kcal/mol (3264.3864 without restraints) Performing minimization step: 3214. Total energy = 3268.5074 kcal/mol (3263.0739 without restraints) Performing minimization step: 3215. Total energy = 3267.1945 kcal/mol (3261.7630 without restraints) Performing minimization step: 3216. Total energy = 3265.8829 kcal/mol (3260.4531 without restraints) Performing minimization step: 3217. Total energy = 3264.5718 kcal/mol (3259.1436 without restraints) Performing minimization step: 3218. Total energy = 3263.2615 kcal/mol (3257.8351 without restraints) Performing minimization step: 3219. Total energy = 3261.9524 kcal/mol (3256.5277 without restraints) Performing minimization step: 3220. Total energy = 3260.6443 kcal/mol (3255.2216 without restraints) Performing minimization step: 3221. Total energy = 3259.3376 kcal/mol (3253.9163 without restraints) Performing minimization step: 3222. Total energy = 3258.0313 kcal/mol (3252.6119 without restraints) Performing minimization step: 3223. Total energy = 3256.7262 kcal/mol (3251.3084 without restraints) Performing minimization step: 3224. Total energy = 3255.4215 kcal/mol (3250.0054 without restraints) Performing minimization step: 3225. Total energy = 3254.1177 kcal/mol (3248.7033 without restraints) Performing minimization step: 3226. Total energy = 3252.8148 kcal/mol (3247.4022 without restraints) Performing minimization step: 3227. Total energy = 3251.5129 kcal/mol (3246.1019 without restraints) Performing minimization step: 3228. Total energy = 3250.2118 kcal/mol (3244.8025 without restraints) Performing minimization step: 3229. Total energy = 3248.9121 kcal/mol (3243.5046 without restraints) Performing minimization step: 3230. Total energy = 3247.6127 kcal/mol (3242.2068 without restraints) Performing minimization step: 3231. Total energy = 3246.3144 kcal/mol (3240.9103 without restraints) Performing minimization step: 3232. Total energy = 3245.0170 kcal/mol (3239.6146 without restraints) Performing minimization step: 3233. Total energy = 3243.7205 kcal/mol (3238.3198 without restraints) Performing minimization step: 3234. Total energy = 3242.4249 kcal/mol (3237.0262 without restraints) Performing minimization step: 3235. Total energy = 3241.1309 kcal/mol (3235.7336 without restraints) Performing minimization step: 3236. Total energy = 3239.8372 kcal/mol (3234.4416 without restraints) Performing minimization step: 3237. Total energy = 3238.5444 kcal/mol (3233.1505 without restraints) Performing minimization step: 3238. Total energy = 3237.2529 kcal/mol (3231.8608 without restraints) Performing minimization step: 3239. Total energy = 3235.9625 kcal/mol (3230.5720 without restraints) Performing minimization step: 3240. Total energy = 3234.6725 kcal/mol (3229.2839 without restraints) Performing minimization step: 3241. Total energy = 3233.3835 kcal/mol (3227.9965 without restraints) Performing minimization step: 3242. Total energy = 3232.0952 kcal/mol (3226.7098 without restraints) Performing minimization step: 3243. Total energy = 3230.8082 kcal/mol (3225.4245 without restraints) Performing minimization step: 3244. Total energy = 3229.5219 kcal/mol (3224.1399 without restraints) Performing minimization step: 3245. Total energy = 3228.2363 kcal/mol (3222.8560 without restraints) Performing minimization step: 3246. Total energy = 3226.9517 kcal/mol (3221.5733 without restraints) Performing minimization step: 3247. Total energy = 3225.6680 kcal/mol (3220.2911 without restraints) Performing minimization step: 3248. Total energy = 3224.3848 kcal/mol (3219.0095 without restraints) Performing minimization step: 3249. Total energy = 3223.1028 kcal/mol (3217.7293 without restraints) Performing minimization step: 3250. Total energy = 3221.8216 kcal/mol (3216.4498 without restraints) Performing minimization step: 3251. Total energy = 3220.5419 kcal/mol (3215.1717 without restraints) Performing minimization step: 3252. Total energy = 3219.2625 kcal/mol (3213.8940 without restraints) Performing minimization step: 3253. Total energy = 3217.9840 kcal/mol (3212.6173 without restraints) Performing minimization step: 3254. Total energy = 3216.7062 kcal/mol (3211.3411 without restraints) Performing minimization step: 3255. Total energy = 3215.4294 kcal/mol (3210.0660 without restraints) Performing minimization step: 3256. Total energy = 3214.1535 kcal/mol (3208.7918 without restraints) Performing minimization step: 3257. Total energy = 3212.8785 kcal/mol (3207.5185 without restraints) Performing minimization step: 3258. Total energy = 3211.6043 kcal/mol (3206.2460 without restraints) Performing minimization step: 3259. Total energy = 3210.3309 kcal/mol (3204.9742 without restraints) Performing minimization step: 3260. Total energy = 3209.0582 kcal/mol (3203.7032 without restraints) Performing minimization step: 3261. Total energy = 3207.7869 kcal/mol (3202.4337 without restraints) Performing minimization step: 3262. Total energy = 3206.5163 kcal/mol (3201.1647 without restraints) Performing minimization step: 3263. Total energy = 3205.2464 kcal/mol (3199.8963 without restraints) Performing minimization step: 3264. Total energy = 3203.9778 kcal/mol (3198.6297 without restraints) Performing minimization step: 3265. Total energy = 3202.7099 kcal/mol (3197.3632 without restraints) Performing minimization step: 3266. Total energy = 3201.4425 kcal/mol (3196.0975 without restraints) Performing minimization step: 3267. Total energy = 3200.1759 kcal/mol (3194.8326 without restraints) Performing minimization step: 3268. Total energy = 3198.9107 kcal/mol (3193.5690 without restraints) Performing minimization step: 3269. Total energy = 3197.6463 kcal/mol (3192.3064 without restraints) Performing minimization step: 3270. Total energy = 3196.3823 kcal/mol (3191.0441 without restraints) Performing minimization step: 3271. Total energy = 3195.1194 kcal/mol (3189.7828 without restraints) Performing minimization step: 3272. Total energy = 3193.8574 kcal/mol (3188.5224 without restraints) Performing minimization step: 3273. Total energy = 3192.5962 kcal/mol (3187.2629 without restraints) Performing minimization step: 3274. Total energy = 3191.3361 kcal/mol (3186.0045 without restraints) Performing minimization step: 3275. Total energy = 3190.0768 kcal/mol (3184.7469 without restraints) Performing minimization step: 3276. Total energy = 3188.8183 kcal/mol (3183.4900 without restraints) Performing minimization step: 3277. Total energy = 3187.5605 kcal/mol (3182.2338 without restraints) Performing minimization step: 3278. Total energy = 3186.3035 kcal/mol (3180.9785 without restraints) Performing minimization step: 3279. Total energy = 3185.0474 kcal/mol (3179.7241 without restraints) Performing minimization step: 3280. Total energy = 3183.7925 kcal/mol (3178.4708 without restraints) Performing minimization step: 3281. Total energy = 3182.5382 kcal/mol (3177.2182 without restraints) Performing minimization step: 3282. Total energy = 3181.2847 kcal/mol (3175.9664 without restraints) Performing minimization step: 3283. Total energy = 3180.0321 kcal/mol (3174.7154 without restraints) Performing minimization step: 3284. Total energy = 3178.7802 kcal/mol (3173.4652 without restraints) Performing minimization step: 3285. Total energy = 3177.5293 kcal/mol (3172.2159 without restraints) Performing minimization step: 3286. Total energy = 3176.2793 kcal/mol (3170.9676 without restraints) Performing minimization step: 3287. Total energy = 3175.0303 kcal/mol (3169.7202 without restraints) Performing minimization step: 3288. Total energy = 3173.7819 kcal/mol (3168.4735 without restraints) Performing minimization step: 3289. Total energy = 3172.5343 kcal/mol (3167.2275 without restraints) Performing minimization step: 3290. Total energy = 3171.2875 kcal/mol (3165.9823 without restraints) Performing minimization step: 3291. Total energy = 3170.0416 kcal/mol (3164.7381 without restraints) Performing minimization step: 3292. Total energy = 3168.7971 kcal/mol (3163.4952 without restraints) Performing minimization step: 3293. Total energy = 3167.5528 kcal/mol (3162.2526 without restraints) Performing minimization step: 3294. Total energy = 3166.3099 kcal/mol (3161.0113 without restraints) Performing minimization step: 3295. Total energy = 3165.0681 kcal/mol (3159.7710 without restraints) Performing minimization step: 3296. Total energy = 3163.8264 kcal/mol (3158.5310 without restraints) Performing minimization step: 3297. Total energy = 3162.5853 kcal/mol (3157.2916 without restraints) Performing minimization step: 3298. Total energy = 3161.3458 kcal/mol (3156.0538 without restraints) Performing minimization step: 3299. Total energy = 3160.1069 kcal/mol (3154.8166 without restraints) Performing minimization step: 3300. Total energy = 3158.8684 kcal/mol (3153.5796 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 3157.6307 kcal/mol (3152.3435 without restraints) Performing minimization step: 3302. Total energy = 3156.3937 kcal/mol (3151.1082 without restraints) Performing minimization step: 3303. Total energy = 3155.1580 kcal/mol (3149.8742 without restraints) Performing minimization step: 3304. Total energy = 3153.9233 kcal/mol (3148.6410 without restraints) Performing minimization step: 3305. Total energy = 3152.6889 kcal/mol (3147.4082 without restraints) Performing minimization step: 3306. Total energy = 3151.4551 kcal/mol (3146.1761 without restraints) Performing minimization step: 3307. Total energy = 3150.2226 kcal/mol (3144.9452 without restraints) Performing minimization step: 3308. Total energy = 3148.9906 kcal/mol (3143.7148 without restraints) Performing minimization step: 3309. Total energy = 3147.7599 kcal/mol (3142.4859 without restraints) Performing minimization step: 3310. Total energy = 3146.5295 kcal/mol (3141.2570 without restraints) Performing minimization step: 3311. Total energy = 3145.3000 kcal/mol (3140.0292 without restraints) Performing minimization step: 3312. Total energy = 3144.0713 kcal/mol (3138.8020 without restraints) Performing minimization step: 3313. Total energy = 3142.8433 kcal/mol (3137.5757 without restraints) Performing minimization step: 3314. Total energy = 3141.6161 kcal/mol (3136.3502 without restraints) Performing minimization step: 3315. Total energy = 3140.3903 kcal/mol (3135.1259 without restraints) Performing minimization step: 3316. Total energy = 3139.1651 kcal/mol (3133.9023 without restraints) Performing minimization step: 3317. Total energy = 3137.9405 kcal/mol (3132.6792 without restraints) Performing minimization step: 3318. Total energy = 3136.7166 kcal/mol (3131.4571 without restraints) Performing minimization step: 3319. Total energy = 3135.4937 kcal/mol (3130.2357 without restraints) Performing minimization step: 3320. Total energy = 3134.2714 kcal/mol (3129.0150 without restraints) Performing minimization step: 3321. Total energy = 3133.0497 kcal/mol (3127.7949 without restraints) Performing minimization step: 3322. Total energy = 3131.8294 kcal/mol (3126.5763 without restraints) Performing minimization step: 3323. Total energy = 3130.6103 kcal/mol (3125.3590 without restraints) Performing minimization step: 3324. Total energy = 3129.3915 kcal/mol (3124.1415 without restraints) Performing minimization step: 3325. Total energy = 3128.1731 kcal/mol (3122.9248 without restraints) Performing minimization step: 3326. Total energy = 3126.9556 kcal/mol (3121.7088 without restraints) Performing minimization step: 3327. Total energy = 3125.7388 kcal/mol (3120.4937 without restraints) Performing minimization step: 3328. Total energy = 3124.5232 kcal/mol (3119.2797 without restraints) Performing minimization step: 3329. Total energy = 3123.3081 kcal/mol (3118.0662 without restraints) Performing minimization step: 3330. Total energy = 3122.0942 kcal/mol (3116.8538 without restraints) Performing minimization step: 3331. Total energy = 3120.8811 kcal/mol (3115.6424 without restraints) Performing minimization step: 3332. Total energy = 3119.6683 kcal/mol (3114.4312 without restraints) Performing minimization step: 3333. Total energy = 3118.4566 kcal/mol (3113.2211 without restraints) Performing minimization step: 3334. Total energy = 3117.2455 kcal/mol (3112.0116 without restraints) Performing minimization step: 3335. Total energy = 3116.0351 kcal/mol (3110.8028 without restraints) Performing minimization step: 3336. Total energy = 3114.8256 kcal/mol (3109.5949 without restraints) Performing minimization step: 3337. Total energy = 3113.6170 kcal/mol (3108.3878 without restraints) Performing minimization step: 3338. Total energy = 3112.4087 kcal/mol (3107.1812 without restraints) Performing minimization step: 3339. Total energy = 3111.2013 kcal/mol (3105.9753 without restraints) Performing minimization step: 3340. Total energy = 3109.9950 kcal/mol (3104.7707 without restraints) Performing minimization step: 3341. Total energy = 3108.7900 kcal/mol (3103.5673 without restraints) Performing minimization step: 3342. Total energy = 3107.5854 kcal/mol (3102.3642 without restraints) Performing minimization step: 3343. Total energy = 3106.3816 kcal/mol (3101.1622 without restraints) Performing minimization step: 3344. Total energy = 3105.1786 kcal/mol (3099.9606 without restraints) Performing minimization step: 3345. Total energy = 3103.9763 kcal/mol (3098.7599 without restraints) Performing minimization step: 3346. Total energy = 3102.7746 kcal/mol (3097.5598 without restraints) Performing minimization step: 3347. Total energy = 3101.5737 kcal/mol (3096.3606 without restraints) Performing minimization step: 3348. Total energy = 3100.3742 kcal/mol (3095.1626 without restraints) Performing minimization step: 3349. Total energy = 3099.1747 kcal/mol (3093.9646 without restraints) Performing minimization step: 3350. Total energy = 3097.9763 kcal/mol (3092.7678 without restraints) Performing minimization step: 3351. Total energy = 3096.7785 kcal/mol (3091.5716 without restraints) Performing minimization step: 3352. Total energy = 3095.5816 kcal/mol (3090.3764 without restraints) Performing minimization step: 3353. Total energy = 3094.3855 kcal/mol (3089.1817 without restraints) Performing minimization step: 3354. Total energy = 3093.1903 kcal/mol (3087.9882 without restraints) Performing minimization step: 3355. Total energy = 3091.9959 kcal/mol (3086.7953 without restraints) Performing minimization step: 3356. Total energy = 3090.8020 kcal/mol (3085.6030 without restraints) Performing minimization step: 3357. Total energy = 3089.6091 kcal/mol (3084.4116 without restraints) Performing minimization step: 3358. Total energy = 3088.4166 kcal/mol (3083.2207 without restraints) Performing minimization step: 3359. Total energy = 3087.2250 kcal/mol (3082.0307 without restraints) Performing minimization step: 3360. Total energy = 3086.0345 kcal/mol (3080.8417 without restraints) Performing minimization step: 3361. Total energy = 3084.8444 kcal/mol (3079.6532 without restraints) Performing minimization step: 3362. Total energy = 3083.6555 kcal/mol (3078.4661 without restraints) Performing minimization step: 3363. Total energy = 3082.4676 kcal/mol (3077.2794 without restraints) Performing minimization step: 3364. Total energy = 3081.2800 kcal/mol (3076.0935 without restraints) Performing minimization step: 3365. Total energy = 3080.0934 kcal/mol (3074.9084 without restraints) Performing minimization step: 3366. Total energy = 3078.9071 kcal/mol (3073.7239 without restraints) Performing minimization step: 3367. Total energy = 3077.7217 kcal/mol (3072.5400 without restraints) Performing minimization step: 3368. Total energy = 3076.5370 kcal/mol (3071.3568 without restraints) Performing minimization step: 3369. Total energy = 3075.3531 kcal/mol (3070.1744 without restraints) Performing minimization step: 3370. Total energy = 3074.1701 kcal/mol (3068.9930 without restraints) Performing minimization step: 3371. Total energy = 3072.9877 kcal/mol (3067.8121 without restraints) Performing minimization step: 3372. Total energy = 3071.8062 kcal/mol (3066.6322 without restraints) Performing minimization step: 3373. Total energy = 3070.6255 kcal/mol (3065.4531 without restraints) Performing minimization step: 3374. Total energy = 3069.4458 kcal/mol (3064.2751 without restraints) Performing minimization step: 3375. Total energy = 3068.2666 kcal/mol (3063.0973 without restraints) Performing minimization step: 3376. Total energy = 3067.0880 kcal/mol (3061.9204 without restraints) Performing minimization step: 3377. Total energy = 3065.9105 kcal/mol (3060.7443 without restraints) Performing minimization step: 3378. Total energy = 3064.7335 kcal/mol (3059.5688 without restraints) Performing minimization step: 3379. Total energy = 3063.5571 kcal/mol (3058.3940 without restraints) Performing minimization step: 3380. Total energy = 3062.3816 kcal/mol (3057.2200 without restraints) Performing minimization step: 3381. Total energy = 3061.2068 kcal/mol (3056.0469 without restraints) Performing minimization step: 3382. Total energy = 3060.0332 kcal/mol (3054.8748 without restraints) Performing minimization step: 3383. Total energy = 3058.8601 kcal/mol (3053.7032 without restraints) Performing minimization step: 3384. Total energy = 3057.6884 kcal/mol (3052.5331 without restraints) Performing minimization step: 3385. Total energy = 3056.5167 kcal/mol (3051.3629 without restraints) Performing minimization step: 3386. Total energy = 3055.3456 kcal/mol (3050.1934 without restraints) Performing minimization step: 3387. Total energy = 3054.1757 kcal/mol (3049.0251 without restraints) Performing minimization step: 3388. Total energy = 3053.0064 kcal/mol (3047.8573 without restraints) Performing minimization step: 3389. Total energy = 3051.8379 kcal/mol (3046.6903 without restraints) Performing minimization step: 3390. Total energy = 3050.6699 kcal/mol (3045.5238 without restraints) Performing minimization step: 3391. Total energy = 3049.5027 kcal/mol (3044.3582 without restraints) Performing minimization step: 3392. Total energy = 3048.3365 kcal/mol (3043.1935 without restraints) Performing minimization step: 3393. Total energy = 3047.1714 kcal/mol (3042.0300 without restraints) Performing minimization step: 3394. Total energy = 3046.0068 kcal/mol (3040.8669 without restraints) Performing minimization step: 3395. Total energy = 3044.8432 kcal/mol (3039.7048 without restraints) Performing minimization step: 3396. Total energy = 3043.6797 kcal/mol (3038.5429 without restraints) Performing minimization step: 3397. Total energy = 3042.5172 kcal/mol (3037.3819 without restraints) Performing minimization step: 3398. Total energy = 3041.3553 kcal/mol (3036.2216 without restraints) Performing minimization step: 3399. Total energy = 3040.1946 kcal/mol (3035.0624 without restraints) Performing minimization step: 3400. Total energy = 3039.0344 kcal/mol (3033.9037 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 3037.8750 kcal/mol (3032.7458 without restraints) Performing minimization step: 3402. Total energy = 3036.7160 kcal/mol (3031.5884 without restraints) Performing minimization step: 3403. Total energy = 3035.5581 kcal/mol (3030.4320 without restraints) Performing minimization step: 3404. Total energy = 3034.4008 kcal/mol (3029.2763 without restraints) Performing minimization step: 3405. Total energy = 3033.2443 kcal/mol (3028.1212 without restraints) Performing minimization step: 3406. Total energy = 3032.0884 kcal/mol (3026.9669 without restraints) Performing minimization step: 3407. Total energy = 3030.9332 kcal/mol (3025.8132 without restraints) Performing minimization step: 3408. Total energy = 3029.7790 kcal/mol (3024.6608 without restraints) Performing minimization step: 3409. Total energy = 3028.6252 kcal/mol (3023.5083 without restraints) Performing minimization step: 3410. Total energy = 3027.4723 kcal/mol (3022.3568 without restraints) Performing minimization step: 3411. Total energy = 3026.3200 kcal/mol (3021.2061 without restraints) Performing minimization step: 3412. Total energy = 3025.1686 kcal/mol (3020.0562 without restraints) Performing minimization step: 3413. Total energy = 3024.0179 kcal/mol (3018.9071 without restraints) Performing minimization step: 3414. Total energy = 3022.8680 kcal/mol (3017.7586 without restraints) Performing minimization step: 3415. Total energy = 3021.7185 kcal/mol (3016.6108 without restraints) Performing minimization step: 3416. Total energy = 3020.5703 kcal/mol (3015.4641 without restraints) Performing minimization step: 3417. Total energy = 3019.4229 kcal/mol (3014.3184 without restraints) Performing minimization step: 3418. Total energy = 3018.2764 kcal/mol (3013.1731 without restraints) Performing minimization step: 3419. Total energy = 3017.1298 kcal/mol (3012.0281 without restraints) Performing minimization step: 3420. Total energy = 3015.9843 kcal/mol (3010.8840 without restraints) Performing minimization step: 3421. Total energy = 3014.8398 kcal/mol (3009.7412 without restraints) Performing minimization step: 3422. Total energy = 3013.6964 kcal/mol (3008.5993 without restraints) Performing minimization step: 3423. Total energy = 3012.5538 kcal/mol (3007.4582 without restraints) Performing minimization step: 3424. Total energy = 3011.4112 kcal/mol (3006.3171 without restraints) Performing minimization step: 3425. Total energy = 3010.2695 kcal/mol (3005.1769 without restraints) Performing minimization step: 3426. Total energy = 3009.1288 kcal/mol (3004.0376 without restraints) Performing minimization step: 3427. Total energy = 3007.9885 kcal/mol (3002.8989 without restraints) Performing minimization step: 3428. Total energy = 3006.8492 kcal/mol (3001.7611 without restraints) Performing minimization step: 3429. Total energy = 3005.7110 kcal/mol (3000.6244 without restraints) Performing minimization step: 3430. Total energy = 3004.5729 kcal/mol (2999.4879 without restraints) Performing minimization step: 3431. Total energy = 3003.4351 kcal/mol (2998.3515 without restraints) Performing minimization step: 3432. Total energy = 3002.2986 kcal/mol (2997.2165 without restraints) Performing minimization step: 3433. Total energy = 3001.1629 kcal/mol (2996.0824 without restraints) Performing minimization step: 3434. Total energy = 3000.0278 kcal/mol (2994.9487 without restraints) Performing minimization step: 3435. Total energy = 2998.8938 kcal/mol (2993.8160 without restraints) Performing minimization step: 3436. Total energy = 2997.7601 kcal/mol (2992.6840 without restraints) Performing minimization step: 3437. Total energy = 2996.6276 kcal/mol (2991.5529 without restraints) Performing minimization step: 3438. Total energy = 2995.4955 kcal/mol (2990.4224 without restraints) Performing minimization step: 3439. Total energy = 2994.3643 kcal/mol (2989.2927 without restraints) Performing minimization step: 3440. Total energy = 2993.2342 kcal/mol (2988.1641 without restraints) Performing minimization step: 3441. Total energy = 2992.1045 kcal/mol (2987.0359 without restraints) Performing minimization step: 3442. Total energy = 2990.9755 kcal/mol (2985.9084 without restraints) Performing minimization step: 3443. Total energy = 2989.8474 kcal/mol (2984.7820 without restraints) Performing minimization step: 3444. Total energy = 2988.7204 kcal/mol (2983.6564 without restraints) Performing minimization step: 3445. Total energy = 2987.5935 kcal/mol (2982.5309 without restraints) Performing minimization step: 3446. Total energy = 2986.4675 kcal/mol (2981.4065 without restraints) Performing minimization step: 3447. Total energy = 2985.3424 kcal/mol (2980.2828 without restraints) Performing minimization step: 3448. Total energy = 2984.2179 kcal/mol (2979.1600 without restraints) Performing minimization step: 3449. Total energy = 2983.0949 kcal/mol (2978.0383 without restraints) Performing minimization step: 3450. Total energy = 2981.9719 kcal/mol (2976.9169 without restraints) Performing minimization step: 3451. Total energy = 2980.8499 kcal/mol (2975.7964 without restraints) Performing minimization step: 3452. Total energy = 2979.7286 kcal/mol (2974.6766 without restraints) Performing minimization step: 3453. Total energy = 2978.6079 kcal/mol (2973.5573 without restraints) Performing minimization step: 3454. Total energy = 2977.4882 kcal/mol (2972.4391 without restraints) Performing minimization step: 3455. Total energy = 2976.3692 kcal/mol (2971.3216 without restraints) Performing minimization step: 3456. Total energy = 2975.2507 kcal/mol (2970.2046 without restraints) Performing minimization step: 3457. Total energy = 2974.1332 kcal/mol (2969.0885 without restraints) Performing minimization step: 3458. Total energy = 2973.0165 kcal/mol (2967.9734 without restraints) Performing minimization step: 3459. Total energy = 2971.9003 kcal/mol (2966.8586 without restraints) Performing minimization step: 3460. Total energy = 2970.7848 kcal/mol (2965.7446 without restraints) Performing minimization step: 3461. Total energy = 2969.6702 kcal/mol (2964.6315 without restraints) Performing minimization step: 3462. Total energy = 2968.5564 kcal/mol (2963.5191 without restraints) Performing minimization step: 3463. Total energy = 2967.4429 kcal/mol (2962.4071 without restraints) Performing minimization step: 3464. Total energy = 2966.3306 kcal/mol (2961.2963 without restraints) Performing minimization step: 3465. Total energy = 2965.2191 kcal/mol (2960.1864 without restraints) Performing minimization step: 3466. Total energy = 2964.1079 kcal/mol (2959.0766 without restraints) Performing minimization step: 3467. Total energy = 2962.9978 kcal/mol (2957.9681 without restraints) Performing minimization step: 3468. Total energy = 2961.8883 kcal/mol (2956.8600 without restraints) Performing minimization step: 3469. Total energy = 2960.7795 kcal/mol (2955.7526 without restraints) Performing minimization step: 3470. Total energy = 2959.6716 kcal/mol (2954.6463 without restraints) Performing minimization step: 3471. Total energy = 2958.5648 kcal/mol (2953.5409 without restraints) Performing minimization step: 3472. Total energy = 2957.4585 kcal/mol (2952.4360 without restraints) Performing minimization step: 3473. Total energy = 2956.3528 kcal/mol (2951.3319 without restraints) Performing minimization step: 3474. Total energy = 2955.2479 kcal/mol (2950.2284 without restraints) Performing minimization step: 3475. Total energy = 2954.1438 kcal/mol (2949.1258 without restraints) Performing minimization step: 3476. Total energy = 2953.0400 kcal/mol (2948.0234 without restraints) Performing minimization step: 3477. Total energy = 2951.9372 kcal/mol (2946.9222 without restraints) Performing minimization step: 3478. Total energy = 2950.8354 kcal/mol (2945.8218 without restraints) Performing minimization step: 3479. Total energy = 2949.7345 kcal/mol (2944.7224 without restraints) Performing minimization step: 3480. Total energy = 2948.6340 kcal/mol (2943.6233 without restraints) Performing minimization step: 3481. Total energy = 2947.5342 kcal/mol (2942.5250 without restraints) Performing minimization step: 3482. Total energy = 2946.4353 kcal/mol (2941.4276 without restraints) Performing minimization step: 3483. Total energy = 2945.3377 kcal/mol (2940.3314 without restraints) Performing minimization step: 3484. Total energy = 2944.2403 kcal/mol (2939.2355 without restraints) Performing minimization step: 3485. Total energy = 2943.1436 kcal/mol (2938.1404 without restraints) Performing minimization step: 3486. Total energy = 2942.0477 kcal/mol (2937.0458 without restraints) Performing minimization step: 3487. Total energy = 2940.9528 kcal/mol (2935.9524 without restraints) Performing minimization step: 3488. Total energy = 2939.8590 kcal/mol (2934.8600 without restraints) Performing minimization step: 3489. Total energy = 2938.7653 kcal/mol (2933.7680 without restraints) Performing minimization step: 3490. Total energy = 2937.6724 kcal/mol (2932.6764 without restraints) Performing minimization step: 3491. Total energy = 2936.5804 kcal/mol (2931.5859 without restraints) Performing minimization step: 3492. Total energy = 2935.4894 kcal/mol (2930.4966 without restraints) Performing minimization step: 3493. Total energy = 2934.3991 kcal/mol (2929.4074 without restraints) Performing minimization step: 3494. Total energy = 2933.3095 kcal/mol (2928.3195 without restraints) Performing minimization step: 3495. Total energy = 2932.2206 kcal/mol (2927.2319 without restraints) Performing minimization step: 3496. Total energy = 2931.1324 kcal/mol (2926.1452 without restraints) Performing minimization step: 3497. Total energy = 2930.0449 kcal/mol (2925.0591 without restraints) Performing minimization step: 3498. Total energy = 2928.9583 kcal/mol (2923.9740 without restraints) Performing minimization step: 3499. Total energy = 2927.8721 kcal/mol (2922.8892 without restraints) Performing minimization step: 3500. Total energy = 2926.7861 kcal/mol (2921.8047 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 2925.7018 kcal/mol (2920.7219 without restraints) Performing minimization step: 3502. Total energy = 2924.6178 kcal/mol (2919.6393 without restraints) Performing minimization step: 3503. Total energy = 2923.5348 kcal/mol (2918.5577 without restraints) Performing minimization step: 3504. Total energy = 2922.4524 kcal/mol (2917.4770 without restraints) Performing minimization step: 3505. Total energy = 2921.3709 kcal/mol (2916.3967 without restraints) Performing minimization step: 3506. Total energy = 2920.2901 kcal/mol (2915.3174 without restraints) Performing minimization step: 3507. Total energy = 2919.2101 kcal/mol (2914.2389 without restraints) Performing minimization step: 3508. Total energy = 2918.1306 kcal/mol (2913.1609 without restraints) Performing minimization step: 3509. Total energy = 2917.0519 kcal/mol (2912.0836 without restraints) Performing minimization step: 3510. Total energy = 2915.9740 kcal/mol (2911.0071 without restraints) Performing minimization step: 3511. Total energy = 2914.8968 kcal/mol (2909.9313 without restraints) Performing minimization step: 3512. Total energy = 2913.8203 kcal/mol (2908.8564 without restraints) Performing minimization step: 3513. Total energy = 2912.7449 kcal/mol (2907.7824 without restraints) Performing minimization step: 3514. Total energy = 2911.6704 kcal/mol (2906.7094 without restraints) Performing minimization step: 3515. Total energy = 2910.5963 kcal/mol (2905.6367 without restraints) Performing minimization step: 3516. Total energy = 2909.5228 kcal/mol (2904.5646 without restraints) Performing minimization step: 3517. Total energy = 2908.4507 kcal/mol (2903.4939 without restraints) Performing minimization step: 3518. Total energy = 2907.3790 kcal/mol (2902.4237 without restraints) Performing minimization step: 3519. Total energy = 2906.3079 kcal/mol (2901.3541 without restraints) Performing minimization step: 3520. Total energy = 2905.2376 kcal/mol (2900.2852 without restraints) Performing minimization step: 3521. Total energy = 2904.1680 kcal/mol (2899.2170 without restraints) Performing minimization step: 3522. Total energy = 2903.0991 kcal/mol (2898.1496 without restraints) Performing minimization step: 3523. Total energy = 2902.0310 kcal/mol (2897.0829 without restraints) Performing minimization step: 3524. Total energy = 2900.9637 kcal/mol (2896.0171 without restraints) Performing minimization step: 3525. Total energy = 2899.8977 kcal/mol (2894.9525 without restraints) Performing minimization step: 3526. Total energy = 2898.8319 kcal/mol (2893.8882 without restraints) Performing minimization step: 3527. Total energy = 2897.7669 kcal/mol (2892.8246 without restraints) Performing minimization step: 3528. Total energy = 2896.7031 kcal/mol (2891.7622 without restraints) Performing minimization step: 3529. Total energy = 2895.6398 kcal/mol (2890.7004 without restraints) Performing minimization step: 3530. Total energy = 2894.5771 kcal/mol (2889.6391 without restraints) Performing minimization step: 3531. Total energy = 2893.5153 kcal/mol (2888.5787 without restraints) Performing minimization step: 3532. Total energy = 2892.4540 kcal/mol (2887.5189 without restraints) Performing minimization step: 3533. Total energy = 2891.3939 kcal/mol (2886.4602 without restraints) Performing minimization step: 3534. Total energy = 2890.3347 kcal/mol (2885.4024 without restraints) Performing minimization step: 3535. Total energy = 2889.2757 kcal/mol (2884.3449 without restraints) Performing minimization step: 3536. Total energy = 2888.2177 kcal/mol (2883.2884 without restraints) Performing minimization step: 3537. Total energy = 2887.1605 kcal/mol (2882.2326 without restraints) Performing minimization step: 3538. Total energy = 2886.1040 kcal/mol (2881.1775 without restraints) Performing minimization step: 3539. Total energy = 2885.0482 kcal/mol (2880.1232 without restraints) Performing minimization step: 3540. Total energy = 2883.9934 kcal/mol (2879.0701 without restraints) Performing minimization step: 3541. Total energy = 2882.9396 kcal/mol (2878.0174 without restraints) Performing minimization step: 3542. Total energy = 2881.8862 kcal/mol (2876.9655 without restraints) Performing minimization step: 3543. Total energy = 2880.8334 kcal/mol (2875.9141 without restraints) Performing minimization step: 3544. Total energy = 2879.7813 kcal/mol (2874.8634 without restraints) Performing minimization step: 3545. Total energy = 2878.7297 kcal/mol (2873.8133 without restraints) Performing minimization step: 3546. Total energy = 2877.6794 kcal/mol (2872.7644 without restraints) Performing minimization step: 3547. Total energy = 2876.6298 kcal/mol (2871.7162 without restraints) Performing minimization step: 3548. Total energy = 2875.5811 kcal/mol (2870.6689 without restraints) Performing minimization step: 3549. Total energy = 2874.5334 kcal/mol (2869.6226 without restraints) Performing minimization step: 3550. Total energy = 2873.4862 kcal/mol (2868.5770 without restraints) Performing minimization step: 3551. Total energy = 2872.4393 kcal/mol (2867.5314 without restraints) Performing minimization step: 3552. Total energy = 2871.3934 kcal/mol (2866.4869 without restraints) Performing minimization step: 3553. Total energy = 2870.3482 kcal/mol (2865.4431 without restraints) Performing minimization step: 3554. Total energy = 2869.3037 kcal/mol (2864.4001 without restraints) Performing minimization step: 3555. Total energy = 2868.2602 kcal/mol (2863.3581 without restraints) Performing minimization step: 3556. Total energy = 2867.2174 kcal/mol (2862.3166 without restraints) Performing minimization step: 3557. Total energy = 2866.1757 kcal/mol (2861.2763 without restraints) Performing minimization step: 3558. Total energy = 2865.1343 kcal/mol (2860.2364 without restraints) Performing minimization step: 3559. Total energy = 2864.0937 kcal/mol (2859.1972 without restraints) Performing minimization step: 3560. Total energy = 2863.0538 kcal/mol (2858.1587 without restraints) Performing minimization step: 3561. Total energy = 2862.0148 kcal/mol (2857.1211 without restraints) Performing minimization step: 3562. Total energy = 2860.9767 kcal/mol (2856.0844 without restraints) Performing minimization step: 3563. Total energy = 2859.9393 kcal/mol (2855.0485 without restraints) Performing minimization step: 3564. Total energy = 2858.9028 kcal/mol (2854.0135 without restraints) Performing minimization step: 3565. Total energy = 2857.8665 kcal/mol (2852.9785 without restraints) Performing minimization step: 3566. Total energy = 2856.8314 kcal/mol (2851.9447 without restraints) Performing minimization step: 3567. Total energy = 2855.7965 kcal/mol (2850.9114 without restraints) Performing minimization step: 3568. Total energy = 2854.7630 kcal/mol (2849.8793 without restraints) Performing minimization step: 3569. Total energy = 2853.7302 kcal/mol (2848.8479 without restraints) Performing minimization step: 3570. Total energy = 2852.6982 kcal/mol (2847.8173 without restraints) Performing minimization step: 3571. Total energy = 2851.6668 kcal/mol (2846.7873 without restraints) Performing minimization step: 3572. Total energy = 2850.6364 kcal/mol (2845.7585 without restraints) Performing minimization step: 3573. Total energy = 2849.6069 kcal/mol (2844.7304 without restraints) Performing minimization step: 3574. Total energy = 2848.5782 kcal/mol (2843.7029 without restraints) Performing minimization step: 3575. Total energy = 2847.5500 kcal/mol (2842.6762 without restraints) Performing minimization step: 3576. Total energy = 2846.5226 kcal/mol (2841.6502 without restraints) Performing minimization step: 3577. Total energy = 2845.4958 kcal/mol (2840.6247 without restraints) Performing minimization step: 3578. Total energy = 2844.4702 kcal/mol (2839.6005 without restraints) Performing minimization step: 3579. Total energy = 2843.4446 kcal/mol (2838.5764 without restraints) Performing minimization step: 3580. Total energy = 2842.4203 kcal/mol (2837.5535 without restraints) Performing minimization step: 3581. Total energy = 2841.3973 kcal/mol (2836.5320 without restraints) Performing minimization step: 3582. Total energy = 2840.3751 kcal/mol (2835.5113 without restraints) Performing minimization step: 3583. Total energy = 2839.3530 kcal/mol (2834.4904 without restraints) Performing minimization step: 3584. Total energy = 2838.3315 kcal/mol (2833.4704 without restraints) Performing minimization step: 3585. Total energy = 2837.3110 kcal/mol (2832.4513 without restraints) Performing minimization step: 3586. Total energy = 2836.2911 kcal/mol (2831.4327 without restraints) Performing minimization step: 3587. Total energy = 2835.2719 kcal/mol (2830.4150 without restraints) Performing minimization step: 3588. Total energy = 2834.2534 kcal/mol (2829.3978 without restraints) Performing minimization step: 3589. Total energy = 2833.2358 kcal/mol (2828.3817 without restraints) Performing minimization step: 3590. Total energy = 2832.2193 kcal/mol (2827.3666 without restraints) Performing minimization step: 3591. Total energy = 2831.2034 kcal/mol (2826.3521 without restraints) Performing minimization step: 3592. Total energy = 2830.1882 kcal/mol (2825.3384 without restraints) Performing minimization step: 3593. Total energy = 2829.1739 kcal/mol (2824.3254 without restraints) Performing minimization step: 3594. Total energy = 2828.1607 kcal/mol (2823.3136 without restraints) Performing minimization step: 3595. Total energy = 2827.1477 kcal/mol (2822.3020 without restraints) Performing minimization step: 3596. Total energy = 2826.1357 kcal/mol (2821.2915 without restraints) Performing minimization step: 3597. Total energy = 2825.1242 kcal/mol (2820.2813 without restraints) Performing minimization step: 3598. Total energy = 2824.1140 kcal/mol (2819.2726 without restraints) Performing minimization step: 3599. Total energy = 2823.1039 kcal/mol (2818.2638 without restraints) Performing minimization step: 3600. Total energy = 2822.0949 kcal/mol (2817.2562 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 2821.0867 kcal/mol (2816.2494 without restraints) Performing minimization step: 3602. Total energy = 2820.0791 kcal/mol (2815.2433 without restraints) Performing minimization step: 3603. Total energy = 2819.0725 kcal/mol (2814.2380 without restraints) Performing minimization step: 3604. Total energy = 2818.0664 kcal/mol (2813.2332 without restraints) Performing minimization step: 3605. Total energy = 2817.0610 kcal/mol (2812.2293 without restraints) Performing minimization step: 3606. Total energy = 2816.0566 kcal/mol (2811.2263 without restraints) Performing minimization step: 3607. Total energy = 2815.0532 kcal/mol (2810.2242 without restraints) Performing minimization step: 3608. Total energy = 2814.0501 kcal/mol (2809.2225 without restraints) Performing minimization step: 3609. Total energy = 2813.0482 kcal/mol (2808.2221 without restraints) Performing minimization step: 3610. Total energy = 2812.0468 kcal/mol (2807.2221 without restraints) Performing minimization step: 3611. Total energy = 2811.0461 kcal/mol (2806.2227 without restraints) Performing minimization step: 3612. Total energy = 2810.0463 kcal/mol (2805.2244 without restraints) Performing minimization step: 3613. Total energy = 2809.0473 kcal/mol (2804.2267 without restraints) Performing minimization step: 3614. Total energy = 2808.0491 kcal/mol (2803.2299 without restraints) Performing minimization step: 3615. Total energy = 2807.0514 kcal/mol (2802.2336 without restraints) Performing minimization step: 3616. Total energy = 2806.0544 kcal/mol (2801.2381 without restraints) Performing minimization step: 3617. Total energy = 2805.0582 kcal/mol (2800.2432 without restraints) Performing minimization step: 3618. Total energy = 2804.0625 kcal/mol (2799.2489 without restraints) Performing minimization step: 3619. Total energy = 2803.0680 kcal/mol (2798.2558 without restraints) Performing minimization step: 3620. Total energy = 2802.0744 kcal/mol (2797.2636 without restraints) Performing minimization step: 3621. Total energy = 2801.0817 kcal/mol (2796.2723 without restraints) Performing minimization step: 3622. Total energy = 2800.0893 kcal/mol (2795.2813 without restraints) Performing minimization step: 3623. Total energy = 2799.0977 kcal/mol (2794.2911 without restraints) Performing minimization step: 3624. Total energy = 2798.1069 kcal/mol (2793.3016 without restraints) Performing minimization step: 3625. Total energy = 2797.1170 kcal/mol (2792.3131 without restraints) Performing minimization step: 3626. Total energy = 2796.1276 kcal/mol (2791.3249 without restraints) Performing minimization step: 3627. Total energy = 2795.1389 kcal/mol (2790.3378 without restraints) Performing minimization step: 3628. Total energy = 2794.1514 kcal/mol (2789.3517 without restraints) Performing minimization step: 3629. Total energy = 2793.1644 kcal/mol (2788.3660 without restraints) Performing minimization step: 3630. Total energy = 2792.1781 kcal/mol (2787.3811 without restraints) Performing minimization step: 3631. Total energy = 2791.1928 kcal/mol (2786.3972 without restraints) Performing minimization step: 3632. Total energy = 2790.2078 kcal/mol (2785.4136 without restraints) Performing minimization step: 3633. Total energy = 2789.2238 kcal/mol (2784.4310 without restraints) Performing minimization step: 3634. Total energy = 2788.2406 kcal/mol (2783.4492 without restraints) Performing minimization step: 3635. Total energy = 2787.2584 kcal/mol (2782.4684 without restraints) Performing minimization step: 3636. Total energy = 2786.2770 kcal/mol (2781.4884 without restraints) Performing minimization step: 3637. Total energy = 2785.2961 kcal/mol (2780.5088 without restraints) Performing minimization step: 3638. Total energy = 2784.3164 kcal/mol (2779.5306 without restraints) Performing minimization step: 3639. Total energy = 2783.3371 kcal/mol (2778.5525 without restraints) Performing minimization step: 3640. Total energy = 2782.3587 kcal/mol (2777.5755 without restraints) Performing minimization step: 3641. Total energy = 2781.3808 kcal/mol (2776.5990 without restraints) Performing minimization step: 3642. Total energy = 2780.4043 kcal/mol (2775.6239 without restraints) Performing minimization step: 3643. Total energy = 2779.4280 kcal/mol (2774.6491 without restraints) Performing minimization step: 3644. Total energy = 2778.4525 kcal/mol (2773.6749 without restraints) Performing minimization step: 3645. Total energy = 2777.4777 kcal/mol (2772.7014 without restraints) Performing minimization step: 3646. Total energy = 2776.5036 kcal/mol (2771.7287 without restraints) Performing minimization step: 3647. Total energy = 2775.5304 kcal/mol (2770.7569 without restraints) Performing minimization step: 3648. Total energy = 2774.5579 kcal/mol (2769.7857 without restraints) Performing minimization step: 3649. Total energy = 2773.5864 kcal/mol (2768.8157 without restraints) Performing minimization step: 3650. Total energy = 2772.6155 kcal/mol (2767.8461 without restraints) Performing minimization step: 3651. Total energy = 2771.6452 kcal/mol (2766.8772 without restraints) Performing minimization step: 3652. Total energy = 2770.6760 kcal/mol (2765.9094 without restraints) Performing minimization step: 3653. Total energy = 2769.7077 kcal/mol (2764.9424 without restraints) Performing minimization step: 3654. Total energy = 2768.7397 kcal/mol (2763.9758 without restraints) Performing minimization step: 3655. Total energy = 2767.7724 kcal/mol (2763.0099 without restraints) Performing minimization step: 3656. Total energy = 2766.8065 kcal/mol (2762.0455 without restraints) Performing minimization step: 3657. Total energy = 2765.8410 kcal/mol (2761.0813 without restraints) Performing minimization step: 3658. Total energy = 2764.8761 kcal/mol (2760.1177 without restraints) Performing minimization step: 3659. Total energy = 2763.9120 kcal/mol (2759.1550 without restraints) Performing minimization step: 3660. Total energy = 2762.9488 kcal/mol (2758.1931 without restraints) Performing minimization step: 3661. Total energy = 2761.9863 kcal/mol (2757.2320 without restraints) Performing minimization step: 3662. Total energy = 2761.0248 kcal/mol (2756.2719 without restraints) Performing minimization step: 3663. Total energy = 2760.0641 kcal/mol (2755.3125 without restraints) Performing minimization step: 3664. Total energy = 2759.1039 kcal/mol (2754.3538 without restraints) Performing minimization step: 3665. Total energy = 2758.1443 kcal/mol (2753.3955 without restraints) Performing minimization step: 3666. Total energy = 2757.1855 kcal/mol (2752.4384 without restraints) Performing minimization step: 3667. Total energy = 2756.2275 kcal/mol (2751.4814 without restraints) Performing minimization step: 3668. Total energy = 2755.2705 kcal/mol (2750.5257 without restraints) Performing minimization step: 3669. Total energy = 2754.3138 kcal/mol (2749.5705 without restraints) Performing minimization step: 3670. Total energy = 2753.3579 kcal/mol (2748.6159 without restraints) Performing minimization step: 3671. Total energy = 2752.4025 kcal/mol (2747.6618 without restraints) Performing minimization step: 3672. Total energy = 2751.4480 kcal/mol (2746.7088 without restraints) Performing minimization step: 3673. Total energy = 2750.4943 kcal/mol (2745.7564 without restraints) Performing minimization step: 3674. Total energy = 2749.5421 kcal/mol (2744.8055 without restraints) Performing minimization step: 3675. Total energy = 2748.5901 kcal/mol (2743.8549 without restraints) Performing minimization step: 3676. Total energy = 2747.6388 kcal/mol (2742.9051 without restraints) Performing minimization step: 3677. Total energy = 2746.6886 kcal/mol (2741.9563 without restraints) Performing minimization step: 3678. Total energy = 2745.7390 kcal/mol (2741.0079 without restraints) Performing minimization step: 3679. Total energy = 2744.7899 kcal/mol (2740.0602 without restraints) Performing minimization step: 3680. Total energy = 2743.8415 kcal/mol (2739.1131 without restraints) Performing minimization step: 3681. Total energy = 2742.8937 kcal/mol (2738.1667 without restraints) Performing minimization step: 3682. Total energy = 2741.9471 kcal/mol (2737.2216 without restraints) Performing minimization step: 3683. Total energy = 2741.0012 kcal/mol (2736.2770 without restraints) Performing minimization step: 3684. Total energy = 2740.0562 kcal/mol (2735.3332 without restraints) Performing minimization step: 3685. Total energy = 2739.1115 kcal/mol (2734.3899 without restraints) Performing minimization step: 3686. Total energy = 2738.1673 kcal/mol (2733.4471 without restraints) Performing minimization step: 3687. Total energy = 2737.2240 kcal/mol (2732.5052 without restraints) Performing minimization step: 3688. Total energy = 2736.2818 kcal/mol (2731.5643 without restraints) Performing minimization step: 3689. Total energy = 2735.3403 kcal/mol (2730.6242 without restraints) Performing minimization step: 3690. Total energy = 2734.3995 kcal/mol (2729.6849 without restraints) Performing minimization step: 3691. Total energy = 2733.4595 kcal/mol (2728.7460 without restraints) Performing minimization step: 3692. Total energy = 2732.5201 kcal/mol (2727.8079 without restraints) Performing minimization step: 3693. Total energy = 2731.5818 kcal/mol (2726.8713 without restraints) Performing minimization step: 3694. Total energy = 2730.6440 kcal/mol (2725.9345 without restraints) Performing minimization step: 3695. Total energy = 2729.7067 kcal/mol (2724.9986 without restraints) Performing minimization step: 3696. Total energy = 2728.7702 kcal/mol (2724.0635 without restraints) Performing minimization step: 3697. Total energy = 2727.8347 kcal/mol (2723.1294 without restraints) Performing minimization step: 3698. Total energy = 2726.8996 kcal/mol (2722.1956 without restraints) Performing minimization step: 3699. Total energy = 2725.9654 kcal/mol (2721.2628 without restraints) Performing minimization step: 3700. Total energy = 2725.0324 kcal/mol (2720.3312 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 2724.1000 kcal/mol (2719.4001 without restraints) Performing minimization step: 3702. Total energy = 2723.1678 kcal/mol (2718.4693 without restraints) Performing minimization step: 3703. Total energy = 2722.2368 kcal/mol (2717.5395 without restraints) Performing minimization step: 3704. Total energy = 2721.3062 kcal/mol (2716.6103 without restraints) Performing minimization step: 3705. Total energy = 2720.3767 kcal/mol (2715.6822 without restraints) Performing minimization step: 3706. Total energy = 2719.4477 kcal/mol (2714.7543 without restraints) Performing minimization step: 3707. Total energy = 2718.5190 kcal/mol (2713.8272 without restraints) Performing minimization step: 3708. Total energy = 2717.5916 kcal/mol (2712.9011 without restraints) Performing minimization step: 3709. Total energy = 2716.6648 kcal/mol (2711.9756 without restraints) Performing minimization step: 3710. Total energy = 2715.7387 kcal/mol (2711.0509 without restraints) Performing minimization step: 3711. Total energy = 2714.8133 kcal/mol (2710.1269 without restraints) Performing minimization step: 3712. Total energy = 2713.8887 kcal/mol (2709.2036 without restraints) Performing minimization step: 3713. Total energy = 2712.9652 kcal/mol (2708.2816 without restraints) Performing minimization step: 3714. Total energy = 2712.0420 kcal/mol (2707.3596 without restraints) Performing minimization step: 3715. Total energy = 2711.1198 kcal/mol (2706.4387 without restraints) Performing minimization step: 3716. Total energy = 2710.1980 kcal/mol (2705.5182 without restraints) Performing minimization step: 3717. Total energy = 2709.2773 kcal/mol (2704.5990 without restraints) Performing minimization step: 3718. Total energy = 2708.3575 kcal/mol (2703.6804 without restraints) Performing minimization step: 3719. Total energy = 2707.4379 kcal/mol (2702.7621 without restraints) Performing minimization step: 3720. Total energy = 2706.5191 kcal/mol (2701.8447 without restraints) Performing minimization step: 3721. Total energy = 2705.6011 kcal/mol (2700.9280 without restraints) Performing minimization step: 3722. Total energy = 2704.6840 kcal/mol (2700.0123 without restraints) Performing minimization step: 3723. Total energy = 2703.7679 kcal/mol (2699.0976 without restraints) Performing minimization step: 3724. Total energy = 2702.8528 kcal/mol (2698.1838 without restraints) Performing minimization step: 3725. Total energy = 2701.9381 kcal/mol (2697.2705 without restraints) Performing minimization step: 3726. Total energy = 2701.0238 kcal/mol (2696.3575 without restraints) Performing minimization step: 3727. Total energy = 2700.1100 kcal/mol (2695.4450 without restraints) Performing minimization step: 3728. Total energy = 2699.1970 kcal/mol (2694.5334 without restraints) Performing minimization step: 3729. Total energy = 2698.2849 kcal/mol (2693.6226 without restraints) Performing minimization step: 3730. Total energy = 2697.3734 kcal/mol (2692.7124 without restraints) Performing minimization step: 3731. Total energy = 2696.4625 kcal/mol (2691.8029 without restraints) Performing minimization step: 3732. Total energy = 2695.5526 kcal/mol (2690.8943 without restraints) Performing minimization step: 3733. Total energy = 2694.6436 kcal/mol (2689.9866 without restraints) Performing minimization step: 3734. Total energy = 2693.7350 kcal/mol (2689.0793 without restraints) Performing minimization step: 3735. Total energy = 2692.8272 kcal/mol (2688.1729 without restraints) Performing minimization step: 3736. Total energy = 2691.9206 kcal/mol (2687.2676 without restraints) Performing minimization step: 3737. Total energy = 2691.0140 kcal/mol (2686.3623 without restraints) Performing minimization step: 3738. Total energy = 2690.1079 kcal/mol (2685.4576 without restraints) Performing minimization step: 3739. Total energy = 2689.2031 kcal/mol (2684.5541 without restraints) Performing minimization step: 3740. Total energy = 2688.2992 kcal/mol (2683.6517 without restraints) Performing minimization step: 3741. Total energy = 2687.3963 kcal/mol (2682.7500 without restraints) Performing minimization step: 3742. Total energy = 2686.4936 kcal/mol (2681.8486 without restraints) Performing minimization step: 3743. Total energy = 2685.5915 kcal/mol (2680.9477 without restraints) Performing minimization step: 3744. Total energy = 2684.6902 kcal/mol (2680.0478 without restraints) Performing minimization step: 3745. Total energy = 2683.7899 kcal/mol (2679.1489 without restraints) Performing minimization step: 3746. Total energy = 2682.8901 kcal/mol (2678.2505 without restraints) Performing minimization step: 3747. Total energy = 2681.9912 kcal/mol (2677.3528 without restraints) Performing minimization step: 3748. Total energy = 2681.0928 kcal/mol (2676.4557 without restraints) Performing minimization step: 3749. Total energy = 2680.1953 kcal/mol (2675.5596 without restraints) Performing minimization step: 3750. Total energy = 2679.2984 kcal/mol (2674.6640 without restraints) Performing minimization step: 3751. Total energy = 2678.4021 kcal/mol (2673.7690 without restraints) Performing minimization step: 3752. Total energy = 2677.5068 kcal/mol (2672.8754 without restraints) Performing minimization step: 3753. Total energy = 2676.6125 kcal/mol (2671.9821 without restraints) Performing minimization step: 3754. Total energy = 2675.7188 kcal/mol (2671.0897 without restraints) Performing minimization step: 3755. Total energy = 2674.8254 kcal/mol (2670.1977 without restraints) Performing minimization step: 3756. Total energy = 2673.9332 kcal/mol (2669.3068 without restraints) Performing minimization step: 3757. Total energy = 2673.0417 kcal/mol (2668.4166 without restraints) Performing minimization step: 3758. Total energy = 2672.1505 kcal/mol (2667.5267 without restraints) Performing minimization step: 3759. Total energy = 2671.2600 kcal/mol (2666.6375 without restraints) Performing minimization step: 3760. Total energy = 2670.3702 kcal/mol (2665.7491 without restraints) Performing minimization step: 3761. Total energy = 2669.4810 kcal/mol (2664.8612 without restraints) Performing minimization step: 3762. Total energy = 2668.5926 kcal/mol (2663.9741 without restraints) Performing minimization step: 3763. Total energy = 2667.7049 kcal/mol (2663.0878 without restraints) Performing minimization step: 3764. Total energy = 2666.8181 kcal/mol (2662.2023 without restraints) Performing minimization step: 3765. Total energy = 2665.9323 kcal/mol (2661.3178 without restraints) Performing minimization step: 3766. Total energy = 2665.0471 kcal/mol (2660.4338 without restraints) Performing minimization step: 3767. Total energy = 2664.1622 kcal/mol (2659.5503 without restraints) Performing minimization step: 3768. Total energy = 2663.2788 kcal/mol (2658.6682 without restraints) Performing minimization step: 3769. Total energy = 2662.3956 kcal/mol (2657.7864 without restraints) Performing minimization step: 3770. Total energy = 2661.5131 kcal/mol (2656.9052 without restraints) Performing minimization step: 3771. Total energy = 2660.6311 kcal/mol (2656.0245 without restraints) Performing minimization step: 3772. Total energy = 2659.7499 kcal/mol (2655.1447 without restraints) Performing minimization step: 3773. Total energy = 2658.8694 kcal/mol (2654.2655 without restraints) Performing minimization step: 3774. Total energy = 2657.9896 kcal/mol (2653.3869 without restraints) Performing minimization step: 3775. Total energy = 2657.1105 kcal/mol (2652.5091 without restraints) Performing minimization step: 3776. Total energy = 2656.2325 kcal/mol (2651.6326 without restraints) Performing minimization step: 3777. Total energy = 2655.3549 kcal/mol (2650.7563 without restraints) Performing minimization step: 3778. Total energy = 2654.4780 kcal/mol (2649.8807 without restraints) Performing minimization step: 3779. Total energy = 2653.6019 kcal/mol (2649.0059 without restraints) Performing minimization step: 3780. Total energy = 2652.7265 kcal/mol (2648.1318 without restraints) Performing minimization step: 3781. Total energy = 2651.8517 kcal/mol (2647.2583 without restraints) Performing minimization step: 3782. Total energy = 2650.9779 kcal/mol (2646.3858 without restraints) Performing minimization step: 3783. Total energy = 2650.1042 kcal/mol (2645.5132 without restraints) Performing minimization step: 3784. Total energy = 2649.2314 kcal/mol (2644.6419 without restraints) Performing minimization step: 3785. Total energy = 2648.3597 kcal/mol (2643.7715 without restraints) Performing minimization step: 3786. Total energy = 2647.4886 kcal/mol (2642.9017 without restraints) Performing minimization step: 3787. Total energy = 2646.6178 kcal/mol (2642.0322 without restraints) Performing minimization step: 3788. Total energy = 2645.7478 kcal/mol (2641.1636 without restraints) Performing minimization step: 3789. Total energy = 2644.8789 kcal/mol (2640.2961 without restraints) Performing minimization step: 3790. Total energy = 2644.0106 kcal/mol (2639.4290 without restraints) Performing minimization step: 3791. Total energy = 2643.1428 kcal/mol (2638.5624 without restraints) Performing minimization step: 3792. Total energy = 2642.2758 kcal/mol (2637.6968 without restraints) Performing minimization step: 3793. Total energy = 2641.4096 kcal/mol (2636.8318 without restraints) Performing minimization step: 3794. Total energy = 2640.5438 kcal/mol (2635.9674 without restraints) Performing minimization step: 3795. Total energy = 2639.6792 kcal/mol (2635.1042 without restraints) Performing minimization step: 3796. Total energy = 2638.8150 kcal/mol (2634.2413 without restraints) Performing minimization step: 3797. Total energy = 2637.9516 kcal/mol (2633.3791 without restraints) Performing minimization step: 3798. Total energy = 2637.0885 kcal/mol (2632.5173 without restraints) Performing minimization step: 3799. Total energy = 2636.2262 kcal/mol (2631.6563 without restraints) Performing minimization step: 3800. Total energy = 2635.3644 kcal/mol (2630.7958 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 2634.5040 kcal/mol (2629.9368 without restraints) Performing minimization step: 3802. Total energy = 2633.6441 kcal/mol (2629.0781 without restraints) Performing minimization step: 3803. Total energy = 2632.7847 kcal/mol (2628.2200 without restraints) Performing minimization step: 3804. Total energy = 2631.9259 kcal/mol (2627.3625 without restraints) Performing minimization step: 3805. Total energy = 2631.0679 kcal/mol (2626.5059 without restraints) Performing minimization step: 3806. Total energy = 2630.2104 kcal/mol (2625.6496 without restraints) Performing minimization step: 3807. Total energy = 2629.3536 kcal/mol (2624.7943 without restraints) Performing minimization step: 3808. Total energy = 2628.4974 kcal/mol (2623.9392 without restraints) Performing minimization step: 3809. Total energy = 2627.6420 kcal/mol (2623.0851 without restraints) Performing minimization step: 3810. Total energy = 2626.7873 kcal/mol (2622.2319 without restraints) Performing minimization step: 3811. Total energy = 2625.9338 kcal/mol (2621.3798 without restraints) Performing minimization step: 3812. Total energy = 2625.0808 kcal/mol (2620.5279 without restraints) Performing minimization step: 3813. Total energy = 2624.2283 kcal/mol (2619.6767 without restraints) Performing minimization step: 3814. Total energy = 2623.3765 kcal/mol (2618.8259 without restraints) Performing minimization step: 3815. Total energy = 2622.5252 kcal/mol (2617.9761 without restraints) Performing minimization step: 3816. Total energy = 2621.6747 kcal/mol (2617.1270 without restraints) Performing minimization step: 3817. Total energy = 2620.8251 kcal/mol (2616.2786 without restraints) Performing minimization step: 3818. Total energy = 2619.9760 kcal/mol (2615.4308 without restraints) Performing minimization step: 3819. Total energy = 2619.1275 kcal/mol (2614.5836 without restraints) Performing minimization step: 3820. Total energy = 2618.2796 kcal/mol (2613.7370 without restraints) Performing minimization step: 3821. Total energy = 2617.4325 kcal/mol (2612.8912 without restraints) Performing minimization step: 3822. Total energy = 2616.5857 kcal/mol (2612.0457 without restraints) Performing minimization step: 3823. Total energy = 2615.7397 kcal/mol (2611.2010 without restraints) Performing minimization step: 3824. Total energy = 2614.8946 kcal/mol (2610.3572 without restraints) Performing minimization step: 3825. Total energy = 2614.0502 kcal/mol (2609.5141 without restraints) Performing minimization step: 3826. Total energy = 2613.2065 kcal/mol (2608.6716 without restraints) Performing minimization step: 3827. Total energy = 2612.3631 kcal/mol (2607.8295 without restraints) Performing minimization step: 3828. Total energy = 2611.5206 kcal/mol (2606.9883 without restraints) Performing minimization step: 3829. Total energy = 2610.6796 kcal/mol (2606.1486 without restraints) Performing minimization step: 3830. Total energy = 2609.8384 kcal/mol (2605.3087 without restraints) Performing minimization step: 3831. Total energy = 2608.9980 kcal/mol (2604.4697 without restraints) Performing minimization step: 3832. Total energy = 2608.1583 kcal/mol (2603.6312 without restraints) Performing minimization step: 3833. Total energy = 2607.3191 kcal/mol (2602.7933 without restraints) Performing minimization step: 3834. Total energy = 2606.4806 kcal/mol (2601.9561 without restraints) Performing minimization step: 3835. Total energy = 2605.6429 kcal/mol (2601.1197 without restraints) Performing minimization step: 3836. Total energy = 2604.8058 kcal/mol (2600.2838 without restraints) Performing minimization step: 3837. Total energy = 2603.9693 kcal/mol (2599.4486 without restraints) Performing minimization step: 3838. Total energy = 2603.1335 kcal/mol (2598.6142 without restraints) Performing minimization step: 3839. Total energy = 2602.2984 kcal/mol (2597.7803 without restraints) Performing minimization step: 3840. Total energy = 2601.4639 kcal/mol (2596.9472 without restraints) Performing minimization step: 3841. Total energy = 2600.6305 kcal/mol (2596.1150 without restraints) Performing minimization step: 3842. Total energy = 2599.7974 kcal/mol (2595.2832 without restraints) Performing minimization step: 3843. Total energy = 2598.9649 kcal/mol (2594.4518 without restraints) Performing minimization step: 3844. Total energy = 2598.1333 kcal/mol (2593.6218 without restraints) Performing minimization step: 3845. Total energy = 2597.3028 kcal/mol (2592.7924 without restraints) Performing minimization step: 3846. Total energy = 2596.4724 kcal/mol (2591.9633 without restraints) Performing minimization step: 3847. Total energy = 2595.6427 kcal/mol (2591.1349 without restraints) Performing minimization step: 3848. Total energy = 2594.8137 kcal/mol (2590.3071 without restraints) Performing minimization step: 3849. Total energy = 2593.9855 kcal/mol (2589.4804 without restraints) Performing minimization step: 3850. Total energy = 2593.1579 kcal/mol (2588.6540 without restraints) Performing minimization step: 3851. Total energy = 2592.3311 kcal/mol (2587.8285 without restraints) Performing minimization step: 3852. Total energy = 2591.5055 kcal/mol (2587.0044 without restraints) Performing minimization step: 3853. Total energy = 2590.6802 kcal/mol (2586.1801 without restraints) Performing minimization step: 3854. Total energy = 2589.8553 kcal/mol (2585.3565 without restraints) Performing minimization step: 3855. Total energy = 2589.0308 kcal/mol (2584.5333 without restraints) Performing minimization step: 3856. Total energy = 2588.2076 kcal/mol (2583.7113 without restraints) Performing minimization step: 3857. Total energy = 2587.3845 kcal/mol (2582.8895 without restraints) Performing minimization step: 3858. Total energy = 2586.5624 kcal/mol (2582.0687 without restraints) Performing minimization step: 3859. Total energy = 2585.7408 kcal/mol (2581.2483 without restraints) Performing minimization step: 3860. Total energy = 2584.9198 kcal/mol (2580.4286 without restraints) Performing minimization step: 3861. Total energy = 2584.0994 kcal/mol (2579.6095 without restraints) Performing minimization step: 3862. Total energy = 2583.2796 kcal/mol (2578.7910 without restraints) Performing minimization step: 3863. Total energy = 2582.4607 kcal/mol (2577.9733 without restraints) Performing minimization step: 3864. Total energy = 2581.6423 kcal/mol (2577.1563 without restraints) Performing minimization step: 3865. Total energy = 2580.8244 kcal/mol (2576.3396 without restraints) Performing minimization step: 3866. Total energy = 2580.0074 kcal/mol (2575.5240 without restraints) Performing minimization step: 3867. Total energy = 2579.1911 kcal/mol (2574.7088 without restraints) Performing minimization step: 3868. Total energy = 2578.3753 kcal/mol (2573.8943 without restraints) Performing minimization step: 3869. Total energy = 2577.5602 kcal/mol (2573.0805 without restraints) Performing minimization step: 3870. Total energy = 2576.7458 kcal/mol (2572.2675 without restraints) Performing minimization step: 3871. Total energy = 2575.9321 kcal/mol (2571.4550 without restraints) Performing minimization step: 3872. Total energy = 2575.1191 kcal/mol (2570.6433 without restraints) Performing minimization step: 3873. Total energy = 2574.3063 kcal/mol (2569.8317 without restraints) Performing minimization step: 3874. Total energy = 2573.4943 kcal/mol (2569.0210 without restraints) Performing minimization step: 3875. Total energy = 2572.6831 kcal/mol (2568.2111 without restraints) Performing minimization step: 3876. Total energy = 2571.8727 kcal/mol (2567.4019 without restraints) Performing minimization step: 3877. Total energy = 2571.0629 kcal/mol (2566.5934 without restraints) Performing minimization step: 3878. Total energy = 2570.2535 kcal/mol (2565.7853 without restraints) Performing minimization step: 3879. Total energy = 2569.4446 kcal/mol (2564.9776 without restraints) Performing minimization step: 3880. Total energy = 2568.6364 kcal/mol (2564.1707 without restraints) Performing minimization step: 3881. Total energy = 2567.8289 kcal/mol (2563.3645 without restraints) Performing minimization step: 3882. Total energy = 2567.0221 kcal/mol (2562.5589 without restraints) Performing minimization step: 3883. Total energy = 2566.2161 kcal/mol (2561.7541 without restraints) Performing minimization step: 3884. Total energy = 2565.4105 kcal/mol (2560.9498 without restraints) Performing minimization step: 3885. Total energy = 2564.6056 kcal/mol (2560.1462 without restraints) Performing minimization step: 3886. Total energy = 2563.8013 kcal/mol (2559.3432 without restraints) Performing minimization step: 3887. Total energy = 2562.9980 kcal/mol (2558.5413 without restraints) Performing minimization step: 3888. Total energy = 2562.1953 kcal/mol (2557.7398 without restraints) Performing minimization step: 3889. Total energy = 2561.3930 kcal/mol (2556.9387 without restraints) Performing minimization step: 3890. Total energy = 2560.5913 kcal/mol (2556.1383 without restraints) Performing minimization step: 3891. Total energy = 2559.7902 kcal/mol (2555.3384 without restraints) Performing minimization step: 3892. Total energy = 2558.9899 kcal/mol (2554.5394 without restraints) Performing minimization step: 3893. Total energy = 2558.1905 kcal/mol (2553.7413 without restraints) Performing minimization step: 3894. Total energy = 2557.3916 kcal/mol (2552.9436 without restraints) Performing minimization step: 3895. Total energy = 2556.5935 kcal/mol (2552.1468 without restraints) Performing minimization step: 3896. Total energy = 2555.7958 kcal/mol (2551.3504 without restraints) Performing minimization step: 3897. Total energy = 2554.9989 kcal/mol (2550.5547 without restraints) Performing minimization step: 3898. Total energy = 2554.2023 kcal/mol (2549.7594 without restraints) Performing minimization step: 3899. Total energy = 2553.4064 kcal/mol (2548.9647 without restraints) Performing minimization step: 3900. Total energy = 2552.6116 kcal/mol (2548.1713 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 2551.8170 kcal/mol (2547.3779 without restraints) Performing minimization step: 3902. Total energy = 2551.0230 kcal/mol (2546.5851 without restraints) Performing minimization step: 3903. Total energy = 2550.2298 kcal/mol (2545.7932 without restraints) Performing minimization step: 3904. Total energy = 2549.4376 kcal/mol (2545.0023 without restraints) Performing minimization step: 3905. Total energy = 2548.6458 kcal/mol (2544.2116 without restraints) Performing minimization step: 3906. Total energy = 2547.8543 kcal/mol (2543.4215 without restraints) Performing minimization step: 3907. Total energy = 2547.0638 kcal/mol (2542.6322 without restraints) Performing minimization step: 3908. Total energy = 2546.2737 kcal/mol (2541.8434 without restraints) Performing minimization step: 3909. Total energy = 2545.4845 kcal/mol (2541.0555 without restraints) Performing minimization step: 3910. Total energy = 2544.6956 kcal/mol (2540.2677 without restraints) Performing minimization step: 3911. Total energy = 2543.9072 kcal/mol (2539.4806 without restraints) Performing minimization step: 3912. Total energy = 2543.1197 kcal/mol (2538.6943 without restraints) Performing minimization step: 3913. Total energy = 2542.3326 kcal/mol (2537.9085 without restraints) Performing minimization step: 3914. Total energy = 2541.5461 kcal/mol (2537.1232 without restraints) Performing minimization step: 3915. Total energy = 2540.7601 kcal/mol (2536.3386 without restraints) Performing minimization step: 3916. Total energy = 2539.9752 kcal/mol (2535.5549 without restraints) Performing minimization step: 3917. Total energy = 2539.1910 kcal/mol (2534.7719 without restraints) Performing minimization step: 3918. Total energy = 2538.4070 kcal/mol (2533.9892 without restraints) Performing minimization step: 3919. Total energy = 2537.6236 kcal/mol (2533.2071 without restraints) Performing minimization step: 3920. Total energy = 2536.8410 kcal/mol (2532.4256 without restraints) Performing minimization step: 3921. Total energy = 2536.0588 kcal/mol (2531.6448 without restraints) Performing minimization step: 3922. Total energy = 2535.2774 kcal/mol (2530.8647 without restraints) Performing minimization step: 3923. Total energy = 2534.4968 kcal/mol (2530.0853 without restraints) Performing minimization step: 3924. Total energy = 2533.7166 kcal/mol (2529.3062 without restraints) Performing minimization step: 3925. Total energy = 2532.9369 kcal/mol (2528.5278 without restraints) Performing minimization step: 3926. Total energy = 2532.1577 kcal/mol (2527.7498 without restraints) Performing minimization step: 3927. Total energy = 2531.3795 kcal/mol (2526.9729 without restraints) Performing minimization step: 3928. Total energy = 2530.6020 kcal/mol (2526.1966 without restraints) Performing minimization step: 3929. Total energy = 2529.8250 kcal/mol (2525.4209 without restraints) Performing minimization step: 3930. Total energy = 2529.0487 kcal/mol (2524.6459 without restraints) Performing minimization step: 3931. Total energy = 2528.2734 kcal/mol (2523.8720 without restraints) Performing minimization step: 3932. Total energy = 2527.4986 kcal/mol (2523.0982 without restraints) Performing minimization step: 3933. Total energy = 2526.7241 kcal/mol (2522.3250 without restraints) Performing minimization step: 3934. Total energy = 2525.9500 kcal/mol (2521.5522 without restraints) Performing minimization step: 3935. Total energy = 2525.1770 kcal/mol (2520.7804 without restraints) Performing minimization step: 3936. Total energy = 2524.4044 kcal/mol (2520.0090 without restraints) Performing minimization step: 3937. Total energy = 2523.6319 kcal/mol (2519.2378 without restraints) Performing minimization step: 3938. Total energy = 2522.8606 kcal/mol (2518.4677 without restraints) Performing minimization step: 3939. Total energy = 2522.0894 kcal/mol (2517.6978 without restraints) Performing minimization step: 3940. Total energy = 2521.3190 kcal/mol (2516.9286 without restraints) Performing minimization step: 3941. Total energy = 2520.5492 kcal/mol (2516.1600 without restraints) Performing minimization step: 3942. Total energy = 2519.7808 kcal/mol (2515.3930 without restraints) Performing minimization step: 3943. Total energy = 2519.0122 kcal/mol (2514.6253 without restraints) Performing minimization step: 3944. Total energy = 2518.2441 kcal/mol (2513.8588 without restraints) Performing minimization step: 3945. Total energy = 2517.4769 kcal/mol (2513.0927 without restraints) Performing minimization step: 3946. Total energy = 2516.7106 kcal/mol (2512.3276 without restraints) Performing minimization step: 3947. Total energy = 2515.9445 kcal/mol (2511.5628 without restraints) Performing minimization step: 3948. Total energy = 2515.1791 kcal/mol (2510.7987 without restraints) Performing minimization step: 3949. Total energy = 2514.4143 kcal/mol (2510.0350 without restraints) Performing minimization step: 3950. Total energy = 2513.6500 kcal/mol (2509.2720 without restraints) Performing minimization step: 3951. Total energy = 2512.8863 kcal/mol (2508.5095 without restraints) Performing minimization step: 3952. Total energy = 2512.1233 kcal/mol (2507.7477 without restraints) Performing minimization step: 3953. Total energy = 2511.3610 kcal/mol (2506.9867 without restraints) Performing minimization step: 3954. Total energy = 2510.5997 kcal/mol (2506.2267 without restraints) Performing minimization step: 3955. Total energy = 2509.8392 kcal/mol (2505.4674 without restraints) Performing minimization step: 3956. Total energy = 2509.0789 kcal/mol (2504.7084 without restraints) Performing minimization step: 3957. Total energy = 2508.3189 kcal/mol (2503.9495 without restraints) Performing minimization step: 3958. Total energy = 2507.5595 kcal/mol (2503.1913 without restraints) Performing minimization step: 3959. Total energy = 2506.8005 kcal/mol (2502.4336 without restraints) Performing minimization step: 3960. Total energy = 2506.0424 kcal/mol (2501.6769 without restraints) Performing minimization step: 3961. Total energy = 2505.2852 kcal/mol (2500.9207 without restraints) Performing minimization step: 3962. Total energy = 2504.5282 kcal/mol (2500.1650 without restraints) Performing minimization step: 3963. Total energy = 2503.7719 kcal/mol (2499.4100 without restraints) Performing minimization step: 3964. Total energy = 2503.0161 kcal/mol (2498.6553 without restraints) Performing minimization step: 3965. Total energy = 2502.2609 kcal/mol (2497.9015 without restraints) Performing minimization step: 3966. Total energy = 2501.5067 kcal/mol (2497.1487 without restraints) Performing minimization step: 3967. Total energy = 2500.7529 kcal/mol (2496.3958 without restraints) Performing minimization step: 3968. Total energy = 2500.0000 kcal/mol (2495.6442 without restraints) Performing minimization step: 3969. Total energy = 2499.2471 kcal/mol (2494.8926 without restraints) Performing minimization step: 3970. Total energy = 2498.4949 kcal/mol (2494.1415 without restraints) Performing minimization step: 3971. Total energy = 2497.7432 kcal/mol (2493.3910 without restraints) Performing minimization step: 3972. Total energy = 2496.9925 kcal/mol (2492.6415 without restraints) Performing minimization step: 3973. Total energy = 2496.2420 kcal/mol (2491.8923 without restraints) Performing minimization step: 3974. Total energy = 2495.4921 kcal/mol (2491.1436 without restraints) Performing minimization step: 3975. Total energy = 2494.7436 kcal/mol (2490.3964 without restraints) Performing minimization step: 3976. Total energy = 2493.9948 kcal/mol (2489.6488 without restraints) Performing minimization step: 3977. Total energy = 2493.2473 kcal/mol (2488.9025 without restraints) Performing minimization step: 3978. Total energy = 2492.4998 kcal/mol (2488.1562 without restraints) Performing minimization step: 3979. Total energy = 2491.7528 kcal/mol (2487.4106 without restraints) Performing minimization step: 3980. Total energy = 2491.0065 kcal/mol (2486.6654 without restraints) Performing minimization step: 3981. Total energy = 2490.2607 kcal/mol (2485.9208 without restraints) Performing minimization step: 3982. Total energy = 2489.5157 kcal/mol (2485.1771 without restraints) Performing minimization step: 3983. Total energy = 2488.7714 kcal/mol (2484.4340 without restraints) Performing minimization step: 3984. Total energy = 2488.0274 kcal/mol (2483.6911 without restraints) Performing minimization step: 3985. Total energy = 2487.2839 kcal/mol (2482.9489 without restraints) Performing minimization step: 3986. Total energy = 2486.5408 kcal/mol (2482.2070 without restraints) Performing minimization step: 3987. Total energy = 2485.7985 kcal/mol (2481.4660 without restraints) Performing minimization step: 3988. Total energy = 2485.0573 kcal/mol (2480.7260 without restraints) Performing minimization step: 3989. Total energy = 2484.3164 kcal/mol (2479.9863 without restraints) Performing minimization step: 3990. Total energy = 2483.5759 kcal/mol (2479.2472 without restraints) Performing minimization step: 3991. Total energy = 2482.8358 kcal/mol (2478.5080 without restraints) Performing minimization step: 3992. Total energy = 2482.0964 kcal/mol (2477.7700 without restraints) Performing minimization step: 3993. Total energy = 2481.3577 kcal/mol (2477.0324 without restraints) Performing minimization step: 3994. Total energy = 2480.6199 kcal/mol (2476.2959 without restraints) Performing minimization step: 3995. Total energy = 2479.8825 kcal/mol (2475.5597 without restraints) Performing minimization step: 3996. Total energy = 2479.1459 kcal/mol (2474.8243 without restraints) Performing minimization step: 3997. Total energy = 2478.4099 kcal/mol (2474.0895 without restraints) Performing minimization step: 3998. Total energy = 2477.6742 kcal/mol (2473.3550 without restraints) Performing minimization step: 3999. Total energy = 2476.9390 kcal/mol (2472.6211 without restraints) Performing minimization step: 4000. Total energy = 2476.2046 kcal/mol (2471.8878 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 2475.4701 kcal/mol (2471.1547 without restraints) Performing minimization step: 4002. Total energy = 2474.7366 kcal/mol (2470.4223 without restraints) Performing minimization step: 4003. Total energy = 2474.0040 kcal/mol (2469.6909 without restraints) Performing minimization step: 4004. Total energy = 2473.2718 kcal/mol (2468.9599 without restraints) Performing minimization step: 4005. Total energy = 2472.5402 kcal/mol (2468.2295 without restraints) Performing minimization step: 4006. Total energy = 2471.8090 kcal/mol (2467.4997 without restraints) Performing minimization step: 4007. Total energy = 2471.0785 kcal/mol (2466.7703 without restraints) Performing minimization step: 4008. Total energy = 2470.3486 kcal/mol (2466.0418 without restraints) Performing minimization step: 4009. Total energy = 2469.6194 kcal/mol (2465.3136 without restraints) Performing minimization step: 4010. Total energy = 2468.8908 kcal/mol (2464.5862 without restraints) Performing minimization step: 4011. Total energy = 2468.1625 kcal/mol (2463.8592 without restraints) Performing minimization step: 4012. Total energy = 2467.4351 kcal/mol (2463.1329 without restraints) Performing minimization step: 4013. Total energy = 2466.7077 kcal/mol (2462.4067 without restraints) Performing minimization step: 4014. Total energy = 2465.9810 kcal/mol (2461.6813 without restraints) Performing minimization step: 4015. Total energy = 2465.2551 kcal/mol (2460.9565 without restraints) Performing minimization step: 4016. Total energy = 2464.5293 kcal/mol (2460.2320 without restraints) Performing minimization step: 4017. Total energy = 2463.8044 kcal/mol (2459.5083 without restraints) Performing minimization step: 4018. Total energy = 2463.0802 kcal/mol (2458.7853 without restraints) Performing minimization step: 4019. Total energy = 2462.3564 kcal/mol (2458.0626 without restraints) Performing minimization step: 4020. Total energy = 2461.6334 kcal/mol (2457.3409 without restraints) Performing minimization step: 4021. Total energy = 2460.9108 kcal/mol (2456.6195 without restraints) Performing minimization step: 4022. Total energy = 2460.1891 kcal/mol (2455.8990 without restraints) Performing minimization step: 4023. Total energy = 2459.4675 kcal/mol (2455.1786 without restraints) Performing minimization step: 4024. Total energy = 2458.7465 kcal/mol (2454.4588 without restraints) Performing minimization step: 4025. Total energy = 2458.0264 kcal/mol (2453.7399 without restraints) Performing minimization step: 4026. Total energy = 2457.3067 kcal/mol (2453.0214 without restraints) Performing minimization step: 4027. Total energy = 2456.5877 kcal/mol (2452.3036 without restraints) Performing minimization step: 4028. Total energy = 2455.8691 kcal/mol (2451.5863 without restraints) Performing minimization step: 4029. Total energy = 2455.1511 kcal/mol (2450.8694 without restraints) Performing minimization step: 4030. Total energy = 2454.4334 kcal/mol (2450.1529 without restraints) Performing minimization step: 4031. Total energy = 2453.7169 kcal/mol (2449.4377 without restraints) Performing minimization step: 4032. Total energy = 2453.0011 kcal/mol (2448.7230 without restraints) Performing minimization step: 4033. Total energy = 2452.2852 kcal/mol (2448.0083 without restraints) Performing minimization step: 4034. Total energy = 2451.5705 kcal/mol (2447.2948 without restraints) Performing minimization step: 4035. Total energy = 2450.8558 kcal/mol (2446.5813 without restraints) Performing minimization step: 4036. Total energy = 2450.1416 kcal/mol (2445.8684 without restraints) Performing minimization step: 4037. Total energy = 2449.4283 kcal/mol (2445.1562 without restraints) Performing minimization step: 4038. Total energy = 2448.7155 kcal/mol (2444.4447 without restraints) Performing minimization step: 4039. Total energy = 2448.0032 kcal/mol (2443.7337 without restraints) Performing minimization step: 4040. Total energy = 2447.2914 kcal/mol (2443.0229 without restraints) Performing minimization step: 4041. Total energy = 2446.5799 kcal/mol (2442.3126 without restraints) Performing minimization step: 4042. Total energy = 2445.8690 kcal/mol (2441.6029 without restraints) Performing minimization step: 4043. Total energy = 2445.1590 kcal/mol (2440.8941 without restraints) Performing minimization step: 4044. Total energy = 2444.4492 kcal/mol (2440.1854 without restraints) Performing minimization step: 4045. Total energy = 2443.7400 kcal/mol (2439.4774 without restraints) Performing minimization step: 4046. Total energy = 2443.0314 kcal/mol (2438.7702 without restraints) Performing minimization step: 4047. Total energy = 2442.3235 kcal/mol (2438.0634 without restraints) Performing minimization step: 4048. Total energy = 2441.6161 kcal/mol (2437.3571 without restraints) Performing minimization step: 4049. Total energy = 2440.9090 kcal/mol (2436.6513 without restraints) Performing minimization step: 4050. Total energy = 2440.2025 kcal/mol (2435.9459 without restraints) Performing minimization step: 4051. Total energy = 2439.4965 kcal/mol (2435.2412 without restraints) Performing minimization step: 4052. Total energy = 2438.7916 kcal/mol (2434.5374 without restraints) Performing minimization step: 4053. Total energy = 2438.0867 kcal/mol (2433.8337 without restraints) Performing minimization step: 4054. Total energy = 2437.3828 kcal/mol (2433.1310 without restraints) Performing minimization step: 4055. Total energy = 2436.6801 kcal/mol (2432.4295 without restraints) Performing minimization step: 4056. Total energy = 2435.9774 kcal/mol (2431.7281 without restraints) Performing minimization step: 4057. Total energy = 2435.2750 kcal/mol (2431.0268 without restraints) Performing minimization step: 4058. Total energy = 2434.5727 kcal/mol (2430.3257 without restraints) Performing minimization step: 4059. Total energy = 2433.8712 kcal/mol (2429.6253 without restraints) Performing minimization step: 4060. Total energy = 2433.1704 kcal/mol (2428.9258 without restraints) Performing minimization step: 4061. Total energy = 2432.4699 kcal/mol (2428.2264 without restraints) Performing minimization step: 4062. Total energy = 2431.7701 kcal/mol (2427.5278 without restraints) Performing minimization step: 4063. Total energy = 2431.0711 kcal/mol (2426.8300 without restraints) Performing minimization step: 4064. Total energy = 2430.3722 kcal/mol (2426.1323 without restraints) Performing minimization step: 4065. Total energy = 2429.6741 kcal/mol (2425.4354 without restraints) Performing minimization step: 4066. Total energy = 2428.9764 kcal/mol (2424.7388 without restraints) Performing minimization step: 4067. Total energy = 2428.2794 kcal/mol (2424.0430 without restraints) Performing minimization step: 4068. Total energy = 2427.5830 kcal/mol (2423.3479 without restraints) Performing minimization step: 4069. Total energy = 2426.8873 kcal/mol (2422.6533 without restraints) Performing minimization step: 4070. Total energy = 2426.1919 kcal/mol (2421.9593 without restraints) Performing minimization step: 4071. Total energy = 2425.4972 kcal/mol (2421.2656 without restraints) Performing minimization step: 4072. Total energy = 2424.8026 kcal/mol (2420.5722 without restraints) Performing minimization step: 4073. Total energy = 2424.1090 kcal/mol (2419.8798 without restraints) Performing minimization step: 4074. Total energy = 2423.4157 kcal/mol (2419.1876 without restraints) Performing minimization step: 4075. Total energy = 2422.7228 kcal/mol (2418.4959 without restraints) Performing minimization step: 4076. Total energy = 2422.0304 kcal/mol (2417.8047 without restraints) Performing minimization step: 4077. Total energy = 2421.3390 kcal/mol (2417.1145 without restraints) Performing minimization step: 4078. Total energy = 2420.6475 kcal/mol (2416.4241 without restraints) Performing minimization step: 4079. Total energy = 2419.9577 kcal/mol (2415.7355 without restraints) Performing minimization step: 4080. Total energy = 2419.2680 kcal/mol (2415.0471 without restraints) Performing minimization step: 4081. Total energy = 2418.5784 kcal/mol (2414.3586 without restraints) Performing minimization step: 4082. Total energy = 2417.8893 kcal/mol (2413.6706 without restraints) Performing minimization step: 4083. Total energy = 2417.2008 kcal/mol (2412.9833 without restraints) Performing minimization step: 4084. Total energy = 2416.5128 kcal/mol (2412.2966 without restraints) Performing minimization step: 4085. Total energy = 2415.8253 kcal/mol (2411.6102 without restraints) Performing minimization step: 4086. Total energy = 2415.1384 kcal/mol (2410.9244 without restraints) Performing minimization step: 4087. Total energy = 2414.4519 kcal/mol (2410.2391 without restraints) Performing minimization step: 4088. Total energy = 2413.7663 kcal/mol (2409.5547 without restraints) Performing minimization step: 4089. Total energy = 2413.0809 kcal/mol (2408.8706 without restraints) Performing minimization step: 4090. Total energy = 2412.3962 kcal/mol (2408.1870 without restraints) Performing minimization step: 4091. Total energy = 2411.7119 kcal/mol (2407.5038 without restraints) Performing minimization step: 4092. Total energy = 2411.0277 kcal/mol (2406.8208 without restraints) Performing minimization step: 4093. Total energy = 2410.3447 kcal/mol (2406.1388 without restraints) Performing minimization step: 4094. Total energy = 2409.6618 kcal/mol (2405.4572 without restraints) Performing minimization step: 4095. Total energy = 2408.9800 kcal/mol (2404.7767 without restraints) Performing minimization step: 4096. Total energy = 2408.2986 kcal/mol (2404.0964 without restraints) Performing minimization step: 4097. Total energy = 2407.6174 kcal/mol (2403.4165 without restraints) Performing minimization step: 4098. Total energy = 2406.9373 kcal/mol (2402.7374 without restraints) Performing minimization step: 4099. Total energy = 2406.2571 kcal/mol (2402.0585 without restraints) Performing minimization step: 4100. Total energy = 2405.5777 kcal/mol (2401.3802 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 2404.8989 kcal/mol (2400.7025 without restraints) Performing minimization step: 4102. Total energy = 2404.2202 kcal/mol (2400.0250 without restraints) Performing minimization step: 4103. Total energy = 2403.5424 kcal/mol (2399.3485 without restraints) Performing minimization step: 4104. Total energy = 2402.8651 kcal/mol (2398.6722 without restraints) Performing minimization step: 4105. Total energy = 2402.1882 kcal/mol (2397.9965 without restraints) Performing minimization step: 4106. Total energy = 2401.5117 kcal/mol (2397.3211 without restraints) Performing minimization step: 4107. Total energy = 2400.8359 kcal/mol (2396.6465 without restraints) Performing minimization step: 4108. Total energy = 2400.1606 kcal/mol (2395.9723 without restraints) Performing minimization step: 4109. Total energy = 2399.4865 kcal/mol (2395.2996 without restraints) Performing minimization step: 4110. Total energy = 2398.8126 kcal/mol (2394.6267 without restraints) Performing minimization step: 4111. Total energy = 2398.1386 kcal/mol (2393.9539 without restraints) Performing minimization step: 4112. Total energy = 2397.4655 kcal/mol (2393.2819 without restraints) Performing minimization step: 4113. Total energy = 2396.7928 kcal/mol (2392.6103 without restraints) Performing minimization step: 4114. Total energy = 2396.1207 kcal/mol (2391.9396 without restraints) Performing minimization step: 4115. Total energy = 2395.4487 kcal/mol (2391.2686 without restraints) Performing minimization step: 4116. Total energy = 2394.7771 kcal/mol (2390.5982 without restraints) Performing minimization step: 4117. Total energy = 2394.1066 kcal/mol (2389.9289 without restraints) Performing minimization step: 4118. Total energy = 2393.4363 kcal/mol (2389.2597 without restraints) Performing minimization step: 4119. Total energy = 2392.7670 kcal/mol (2388.5917 without restraints) Performing minimization step: 4120. Total energy = 2392.0981 kcal/mol (2387.9240 without restraints) Performing minimization step: 4121. Total energy = 2391.4292 kcal/mol (2387.2559 without restraints) Performing minimization step: 4122. Total energy = 2390.7608 kcal/mol (2386.5889 without restraints) Performing minimization step: 4123. Total energy = 2390.0932 kcal/mol (2385.9225 without restraints) Performing minimization step: 4124. Total energy = 2389.4264 kcal/mol (2385.2568 without restraints) Performing minimization step: 4125. Total energy = 2388.7595 kcal/mol (2384.5910 without restraints) Performing minimization step: 4126. Total energy = 2388.0933 kcal/mol (2383.9259 without restraints) Performing minimization step: 4127. Total energy = 2387.4275 kcal/mol (2383.2613 without restraints) Performing minimization step: 4128. Total energy = 2386.7622 kcal/mol (2382.5972 without restraints) Performing minimization step: 4129. Total energy = 2386.0975 kcal/mol (2381.9336 without restraints) Performing minimization step: 4130. Total energy = 2385.4333 kcal/mol (2381.2706 without restraints) Performing minimization step: 4131. Total energy = 2384.7702 kcal/mol (2380.6086 without restraints) Performing minimization step: 4132. Total energy = 2384.1070 kcal/mol (2379.9466 without restraints) Performing minimization step: 4133. Total energy = 2383.4440 kcal/mol (2379.2847 without restraints) Performing minimization step: 4134. Total energy = 2382.7825 kcal/mol (2378.6245 without restraints) Performing minimization step: 4135. Total energy = 2382.1213 kcal/mol (2377.9644 without restraints) Performing minimization step: 4136. Total energy = 2381.4605 kcal/mol (2377.3048 without restraints) Performing minimization step: 4137. Total energy = 2380.7999 kcal/mol (2376.6453 without restraints) Performing minimization step: 4138. Total energy = 2380.1397 kcal/mol (2375.9862 without restraints) Performing minimization step: 4139. Total energy = 2379.4802 kcal/mol (2375.3279 without restraints) Performing minimization step: 4140. Total energy = 2378.8212 kcal/mol (2374.6700 without restraints) Performing minimization step: 4141. Total energy = 2378.1626 kcal/mol (2374.0127 without restraints) Performing minimization step: 4142. Total energy = 2377.5045 kcal/mol (2373.3555 without restraints) Performing minimization step: 4143. Total energy = 2376.8470 kcal/mol (2372.6992 without restraints) Performing minimization step: 4144. Total energy = 2376.1898 kcal/mol (2372.0432 without restraints) Performing minimization step: 4145. Total energy = 2375.5331 kcal/mol (2371.3877 without restraints) Performing minimization step: 4146. Total energy = 2374.8771 kcal/mol (2370.7328 without restraints) Performing minimization step: 4147. Total energy = 2374.2218 kcal/mol (2370.0786 without restraints) Performing minimization step: 4148. Total energy = 2373.5672 kcal/mol (2369.4253 without restraints) Performing minimization step: 4149. Total energy = 2372.9130 kcal/mol (2368.7721 without restraints) Performing minimization step: 4150. Total energy = 2372.2588 kcal/mol (2368.1191 without restraints) Performing minimization step: 4151. Total energy = 2371.6052 kcal/mol (2367.4668 without restraints) Performing minimization step: 4152. Total energy = 2370.9522 kcal/mol (2366.8149 without restraints) Performing minimization step: 4153. Total energy = 2370.2999 kcal/mol (2366.1636 without restraints) Performing minimization step: 4154. Total energy = 2369.6480 kcal/mol (2365.5129 without restraints) Performing minimization step: 4155. Total energy = 2368.9965 kcal/mol (2364.8625 without restraints) Performing minimization step: 4156. Total energy = 2368.3454 kcal/mol (2364.2126 without restraints) Performing minimization step: 4157. Total energy = 2367.6950 kcal/mol (2363.5633 without restraints) Performing minimization step: 4158. Total energy = 2367.0447 kcal/mol (2362.9141 without restraints) Performing minimization step: 4159. Total energy = 2366.3950 kcal/mol (2362.2656 without restraints) Performing minimization step: 4160. Total energy = 2365.7459 kcal/mol (2361.6176 without restraints) Performing minimization step: 4161. Total energy = 2365.0972 kcal/mol (2360.9700 without restraints) Performing minimization step: 4162. Total energy = 2364.4490 kcal/mol (2360.3231 without restraints) Performing minimization step: 4163. Total energy = 2363.8015 kcal/mol (2359.6766 without restraints) Performing minimization step: 4164. Total energy = 2363.1545 kcal/mol (2359.0309 without restraints) Performing minimization step: 4165. Total energy = 2362.5080 kcal/mol (2358.3854 without restraints) Performing minimization step: 4166. Total energy = 2361.8622 kcal/mol (2357.7410 without restraints) Performing minimization step: 4167. Total energy = 2361.2170 kcal/mol (2357.0968 without restraints) Performing minimization step: 4168. Total energy = 2360.5720 kcal/mol (2356.4528 without restraints) Performing minimization step: 4169. Total energy = 2359.9273 kcal/mol (2355.8092 without restraints) Performing minimization step: 4170. Total energy = 2359.2830 kcal/mol (2355.1660 without restraints) Performing minimization step: 4171. Total energy = 2358.6391 kcal/mol (2354.5233 without restraints) Performing minimization step: 4172. Total energy = 2357.9957 kcal/mol (2353.8810 without restraints) Performing minimization step: 4173. Total energy = 2357.3529 kcal/mol (2353.2393 without restraints) Performing minimization step: 4174. Total energy = 2356.7106 kcal/mol (2352.5982 without restraints) Performing minimization step: 4175. Total energy = 2356.0688 kcal/mol (2351.9578 without restraints) Performing minimization step: 4176. Total energy = 2355.4274 kcal/mol (2351.3173 without restraints) Performing minimization step: 4177. Total energy = 2354.7865 kcal/mol (2350.6775 without restraints) Performing minimization step: 4178. Total energy = 2354.1462 kcal/mol (2350.0384 without restraints) Performing minimization step: 4179. Total energy = 2353.5068 kcal/mol (2349.4001 without restraints) Performing minimization step: 4180. Total energy = 2352.8673 kcal/mol (2348.7617 without restraints) Performing minimization step: 4181. Total energy = 2352.2284 kcal/mol (2348.1239 without restraints) Performing minimization step: 4182. Total energy = 2351.5898 kcal/mol (2347.4864 without restraints) Performing minimization step: 4183. Total energy = 2350.9522 kcal/mol (2346.8499 without restraints) Performing minimization step: 4184. Total energy = 2350.3148 kcal/mol (2346.2137 without restraints) Performing minimization step: 4185. Total energy = 2349.6775 kcal/mol (2345.5775 without restraints) Performing minimization step: 4186. Total energy = 2349.0411 kcal/mol (2344.9422 without restraints) Performing minimization step: 4187. Total energy = 2348.4051 kcal/mol (2344.3075 without restraints) Performing minimization step: 4188. Total energy = 2347.7697 kcal/mol (2343.6731 without restraints) Performing minimization step: 4189. Total energy = 2347.1346 kcal/mol (2343.0391 without restraints) Performing minimization step: 4190. Total energy = 2346.4996 kcal/mol (2342.4053 without restraints) Performing minimization step: 4191. Total energy = 2345.8655 kcal/mol (2341.7722 without restraints) Performing minimization step: 4192. Total energy = 2345.2316 kcal/mol (2341.1395 without restraints) Performing minimization step: 4193. Total energy = 2344.5984 kcal/mol (2340.5075 without restraints) Performing minimization step: 4194. Total energy = 2343.9658 kcal/mol (2339.8760 without restraints) Performing minimization step: 4195. Total energy = 2343.3334 kcal/mol (2339.2447 without restraints) Performing minimization step: 4196. Total energy = 2342.7017 kcal/mol (2338.6142 without restraints) Performing minimization step: 4197. Total energy = 2342.0703 kcal/mol (2337.9838 without restraints) Performing minimization step: 4198. Total energy = 2341.4391 kcal/mol (2337.3538 without restraints) Performing minimization step: 4199. Total energy = 2340.8088 kcal/mol (2336.7246 without restraints) Performing minimization step: 4200. Total energy = 2340.1790 kcal/mol (2336.0959 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 2339.5494 kcal/mol (2335.4674 without restraints) Performing minimization step: 4202. Total energy = 2338.9205 kcal/mol (2334.8396 without restraints) Performing minimization step: 4203. Total energy = 2338.2919 kcal/mol (2334.2121 without restraints) Performing minimization step: 4204. Total energy = 2337.6637 kcal/mol (2333.5851 without restraints) Performing minimization step: 4205. Total energy = 2337.0363 kcal/mol (2332.9587 without restraints) Performing minimization step: 4206. Total energy = 2336.4095 kcal/mol (2332.3332 without restraints) Performing minimization step: 4207. Total energy = 2335.7830 kcal/mol (2331.7077 without restraints) Performing minimization step: 4208. Total energy = 2335.1571 kcal/mol (2331.0829 without restraints) Performing minimization step: 4209. Total energy = 2334.5315 kcal/mol (2330.4584 without restraints) Performing minimization step: 4210. Total energy = 2333.9061 kcal/mol (2329.8342 without restraints) Performing minimization step: 4211. Total energy = 2333.2813 kcal/mol (2329.2104 without restraints) Performing minimization step: 4212. Total energy = 2332.6570 kcal/mol (2328.5873 without restraints) Performing minimization step: 4213. Total energy = 2332.0332 kcal/mol (2327.9646 without restraints) Performing minimization step: 4214. Total energy = 2331.4099 kcal/mol (2327.3424 without restraints) Performing minimization step: 4215. Total energy = 2330.7873 kcal/mol (2326.7210 without restraints) Performing minimization step: 4216. Total energy = 2330.1649 kcal/mol (2326.0996 without restraints) Performing minimization step: 4217. Total energy = 2329.5432 kcal/mol (2325.4791 without restraints) Performing minimization step: 4218. Total energy = 2328.9214 kcal/mol (2324.8583 without restraints) Performing minimization step: 4219. Total energy = 2328.3004 kcal/mol (2324.2385 without restraints) Performing minimization step: 4220. Total energy = 2327.6801 kcal/mol (2323.6194 without restraints) Performing minimization step: 4221. Total energy = 2327.0600 kcal/mol (2323.0003 without restraints) Performing minimization step: 4222. Total energy = 2326.4402 kcal/mol (2322.3816 without restraints) Performing minimization step: 4223. Total energy = 2325.8211 kcal/mol (2321.7638 without restraints) Performing minimization step: 4224. Total energy = 2325.2025 kcal/mol (2321.1461 without restraints) Performing minimization step: 4225. Total energy = 2324.5843 kcal/mol (2320.5290 without restraints) Performing minimization step: 4226. Total energy = 2323.9663 kcal/mol (2319.9121 without restraints) Performing minimization step: 4227. Total energy = 2323.3493 kcal/mol (2319.2962 without restraints) Performing minimization step: 4228. Total energy = 2322.7323 kcal/mol (2318.6803 without restraints) Performing minimization step: 4229. Total energy = 2322.1157 kcal/mol (2318.0648 without restraints) Performing minimization step: 4230. Total energy = 2321.4997 kcal/mol (2317.4499 without restraints) Performing minimization step: 4231. Total energy = 2320.8844 kcal/mol (2316.8357 without restraints) Performing minimization step: 4232. Total energy = 2320.2692 kcal/mol (2316.2216 without restraints) Performing minimization step: 4233. Total energy = 2319.6547 kcal/mol (2315.6084 without restraints) Performing minimization step: 4234. Total energy = 2319.0405 kcal/mol (2314.9952 without restraints) Performing minimization step: 4235. Total energy = 2318.4266 kcal/mol (2314.3824 without restraints) Performing minimization step: 4236. Total energy = 2317.8137 kcal/mol (2313.7708 without restraints) Performing minimization step: 4237. Total energy = 2317.2010 kcal/mol (2313.1590 without restraints) Performing minimization step: 4238. Total energy = 2316.5889 kcal/mol (2312.5482 without restraints) Performing minimization step: 4239. Total energy = 2315.9769 kcal/mol (2311.9371 without restraints) Performing minimization step: 4240. Total energy = 2315.3653 kcal/mol (2311.3266 without restraints) Performing minimization step: 4241. Total energy = 2314.7545 kcal/mol (2310.7170 without restraints) Performing minimization step: 4242. Total energy = 2314.1446 kcal/mol (2310.1081 without restraints) Performing minimization step: 4243. Total energy = 2313.5347 kcal/mol (2309.4993 without restraints) Performing minimization step: 4244. Total energy = 2312.9257 kcal/mol (2308.8914 without restraints) Performing minimization step: 4245. Total energy = 2312.3163 kcal/mol (2308.2831 without restraints) Performing minimization step: 4246. Total energy = 2311.7080 kcal/mol (2307.6759 without restraints) Performing minimization step: 4247. Total energy = 2311.0995 kcal/mol (2307.0685 without restraints) Performing minimization step: 4248. Total energy = 2310.4918 kcal/mol (2306.4621 without restraints) Performing minimization step: 4249. Total energy = 2309.8845 kcal/mol (2305.8556 without restraints) Performing minimization step: 4250. Total energy = 2309.2776 kcal/mol (2305.2498 without restraints) Performing minimization step: 4251. Total energy = 2308.6711 kcal/mol (2304.6444 without restraints) Performing minimization step: 4252. Total energy = 2308.0651 kcal/mol (2304.0395 without restraints) Performing minimization step: 4253. Total energy = 2307.4596 kcal/mol (2303.4351 without restraints) Performing minimization step: 4254. Total energy = 2306.8541 kcal/mol (2302.8307 without restraints) Performing minimization step: 4255. Total energy = 2306.2493 kcal/mol (2302.2270 without restraints) Performing minimization step: 4256. Total energy = 2305.6449 kcal/mol (2301.6237 without restraints) Performing minimization step: 4257. Total energy = 2305.0415 kcal/mol (2301.0213 without restraints) Performing minimization step: 4258. Total energy = 2304.4384 kcal/mol (2300.4194 without restraints) Performing minimization step: 4259. Total energy = 2303.8356 kcal/mol (2299.8178 without restraints) Performing minimization step: 4260. Total energy = 2303.2333 kcal/mol (2299.2166 without restraints) Performing minimization step: 4261. Total energy = 2302.6314 kcal/mol (2298.6156 without restraints) Performing minimization step: 4262. Total energy = 2302.0299 kcal/mol (2298.0152 without restraints) Performing minimization step: 4263. Total energy = 2301.4284 kcal/mol (2297.4147 without restraints) Performing minimization step: 4264. Total energy = 2300.8275 kcal/mol (2296.8150 without restraints) Performing minimization step: 4265. Total energy = 2300.2273 kcal/mol (2296.2159 without restraints) Performing minimization step: 4266. Total energy = 2299.6271 kcal/mol (2295.6168 without restraints) Performing minimization step: 4267. Total energy = 2299.0275 kcal/mol (2295.0182 without restraints) Performing minimization step: 4268. Total energy = 2298.4283 kcal/mol (2294.4202 without restraints) Performing minimization step: 4269. Total energy = 2297.8297 kcal/mol (2293.8226 without restraints) Performing minimization step: 4270. Total energy = 2297.2314 kcal/mol (2293.2254 without restraints) Performing minimization step: 4271. Total energy = 2296.6337 kcal/mol (2292.6289 without restraints) Performing minimization step: 4272. Total energy = 2296.0370 kcal/mol (2292.0332 without restraints) Performing minimization step: 4273. Total energy = 2295.4400 kcal/mol (2291.4373 without restraints) Performing minimization step: 4274. Total energy = 2294.8431 kcal/mol (2290.8415 without restraints) Performing minimization step: 4275. Total energy = 2294.2478 kcal/mol (2290.2472 without restraints) Performing minimization step: 4276. Total energy = 2293.6526 kcal/mol (2289.6532 without restraints) Performing minimization step: 4277. Total energy = 2293.0574 kcal/mol (2289.0590 without restraints) Performing minimization step: 4278. Total energy = 2292.4626 kcal/mol (2288.4652 without restraints) Performing minimization step: 4279. Total energy = 2291.8684 kcal/mol (2287.8721 without restraints) Performing minimization step: 4280. Total energy = 2291.2746 kcal/mol (2287.2794 without restraints) Performing minimization step: 4281. Total energy = 2290.6813 kcal/mol (2286.6872 without restraints) Performing minimization step: 4282. Total energy = 2290.0882 kcal/mol (2286.0952 without restraints) Performing minimization step: 4283. Total energy = 2289.4956 kcal/mol (2285.5037 without restraints) Performing minimization step: 4284. Total energy = 2288.9042 kcal/mol (2284.9133 without restraints) Performing minimization step: 4285. Total energy = 2288.3125 kcal/mol (2284.3228 without restraints) Performing minimization step: 4286. Total energy = 2287.7210 kcal/mol (2283.7323 without restraints) Performing minimization step: 4287. Total energy = 2287.1304 kcal/mol (2283.1428 without restraints) Performing minimization step: 4288. Total energy = 2286.5400 kcal/mol (2282.5535 without restraints) Performing minimization step: 4289. Total energy = 2285.9504 kcal/mol (2281.9649 without restraints) Performing minimization step: 4290. Total energy = 2285.3609 kcal/mol (2281.3765 without restraints) Performing minimization step: 4291. Total energy = 2284.7725 kcal/mol (2280.7891 without restraints) Performing minimization step: 4292. Total energy = 2284.1838 kcal/mol (2280.2016 without restraints) Performing minimization step: 4293. Total energy = 2283.5955 kcal/mol (2279.6143 without restraints) Performing minimization step: 4294. Total energy = 2283.0077 kcal/mol (2279.0277 without restraints) Performing minimization step: 4295. Total energy = 2282.4205 kcal/mol (2278.4414 without restraints) Performing minimization step: 4296. Total energy = 2281.8333 kcal/mol (2277.8553 without restraints) Performing minimization step: 4297. Total energy = 2281.2468 kcal/mol (2277.2699 without restraints) Performing minimization step: 4298. Total energy = 2280.6605 kcal/mol (2276.6847 without restraints) Performing minimization step: 4299. Total energy = 2280.0751 kcal/mol (2276.1003 without restraints) Performing minimization step: 4300. Total energy = 2279.4897 kcal/mol (2275.5160 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 2278.9053 kcal/mol (2274.9326 without restraints) Performing minimization step: 4302. Total energy = 2278.3210 kcal/mol (2274.3494 without restraints) Performing minimization step: 4303. Total energy = 2277.7374 kcal/mol (2273.7669 without restraints) Performing minimization step: 4304. Total energy = 2277.1537 kcal/mol (2273.1844 without restraints) Performing minimization step: 4305. Total energy = 2276.5705 kcal/mol (2272.6023 without restraints) Performing minimization step: 4306. Total energy = 2275.9879 kcal/mol (2272.0206 without restraints) Performing minimization step: 4307. Total energy = 2275.4061 kcal/mol (2271.4398 without restraints) Performing minimization step: 4308. Total energy = 2274.8241 kcal/mol (2270.8590 without restraints) Performing minimization step: 4309. Total energy = 2274.2424 kcal/mol (2270.2783 without restraints) Performing minimization step: 4310. Total energy = 2273.6616 kcal/mol (2269.6988 without restraints) Performing minimization step: 4311. Total energy = 2273.0812 kcal/mol (2269.1192 without restraints) Performing minimization step: 4312. Total energy = 2272.5011 kcal/mol (2268.5402 without restraints) Performing minimization step: 4313. Total energy = 2271.9213 kcal/mol (2267.9614 without restraints) Performing minimization step: 4314. Total energy = 2271.3419 kcal/mol (2267.3831 without restraints) Performing minimization step: 4315. Total energy = 2270.7627 kcal/mol (2266.8050 without restraints) Performing minimization step: 4316. Total energy = 2270.1844 kcal/mol (2266.2277 without restraints) Performing minimization step: 4317. Total energy = 2269.6060 kcal/mol (2265.6504 without restraints) Performing minimization step: 4318. Total energy = 2269.0282 kcal/mol (2265.0737 without restraints) Performing minimization step: 4319. Total energy = 2268.4507 kcal/mol (2264.4972 without restraints) Performing minimization step: 4320. Total energy = 2267.8736 kcal/mol (2263.9211 without restraints) Performing minimization step: 4321. Total energy = 2267.2974 kcal/mol (2263.3460 without restraints) Performing minimization step: 4322. Total energy = 2266.7217 kcal/mol (2262.7713 without restraints) Performing minimization step: 4323. Total energy = 2266.1456 kcal/mol (2262.1964 without restraints) Performing minimization step: 4324. Total energy = 2265.5701 kcal/mol (2261.6219 without restraints) Performing minimization step: 4325. Total energy = 2264.9952 kcal/mol (2261.0481 without restraints) Performing minimization step: 4326. Total energy = 2264.4207 kcal/mol (2260.4747 without restraints) Performing minimization step: 4327. Total energy = 2263.8466 kcal/mol (2259.9015 without restraints) Performing minimization step: 4328. Total energy = 2263.2729 kcal/mol (2259.3289 without restraints) Performing minimization step: 4329. Total energy = 2262.6995 kcal/mol (2258.7565 without restraints) Performing minimization step: 4330. Total energy = 2262.1272 kcal/mol (2258.1853 without restraints) Performing minimization step: 4331. Total energy = 2261.5550 kcal/mol (2257.6141 without restraints) Performing minimization step: 4332. Total energy = 2260.9829 kcal/mol (2257.0430 without restraints) Performing minimization step: 4333. Total energy = 2260.4114 kcal/mol (2256.4729 without restraints) Performing minimization step: 4334. Total energy = 2259.8400 kcal/mol (2255.9022 without restraints) Performing minimization step: 4335. Total energy = 2259.2694 kcal/mol (2255.3328 without restraints) Performing minimization step: 4336. Total energy = 2258.6988 kcal/mol (2254.7631 without restraints) Performing minimization step: 4337. Total energy = 2258.1287 kcal/mol (2254.1942 without restraints) Performing minimization step: 4338. Total energy = 2257.5592 kcal/mol (2253.6256 without restraints) Performing minimization step: 4339. Total energy = 2256.9899 kcal/mol (2253.0574 without restraints) Performing minimization step: 4340. Total energy = 2256.4208 kcal/mol (2252.4894 without restraints) Performing minimization step: 4341. Total energy = 2255.8522 kcal/mol (2251.9218 without restraints) Performing minimization step: 4342. Total energy = 2255.2842 kcal/mol (2251.3549 without restraints) Performing minimization step: 4343. Total energy = 2254.7165 kcal/mol (2250.7882 without restraints) Performing minimization step: 4344. Total energy = 2254.1490 kcal/mol (2250.2218 without restraints) Performing minimization step: 4345. Total energy = 2253.5818 kcal/mol (2249.6556 without restraints) Performing minimization step: 4346. Total energy = 2253.0153 kcal/mol (2249.0902 without restraints) Performing minimization step: 4347. Total energy = 2252.4494 kcal/mol (2248.5253 without restraints) Performing minimization step: 4348. Total energy = 2251.8837 kcal/mol (2247.9606 without restraints) Performing minimization step: 4349. Total energy = 2251.3192 kcal/mol (2247.3972 without restraints) Performing minimization step: 4350. Total energy = 2250.7544 kcal/mol (2246.8334 without restraints) Performing minimization step: 4351. Total energy = 2250.1898 kcal/mol (2246.2699 without restraints) Performing minimization step: 4352. Total energy = 2249.6257 kcal/mol (2245.7068 without restraints) Performing minimization step: 4353. Total energy = 2249.0618 kcal/mol (2245.1440 without restraints) Performing minimization step: 4354. Total energy = 2248.4986 kcal/mol (2244.5818 without restraints) Performing minimization step: 4355. Total energy = 2247.9356 kcal/mol (2244.0198 without restraints) Performing minimization step: 4356. Total energy = 2247.3736 kcal/mol (2243.4589 without restraints) Performing minimization step: 4357. Total energy = 2246.8116 kcal/mol (2242.8979 without restraints) Performing minimization step: 4358. Total energy = 2246.2502 kcal/mol (2242.3375 without restraints) Performing minimization step: 4359. Total energy = 2245.6894 kcal/mol (2241.7779 without restraints) Performing minimization step: 4360. Total energy = 2245.1288 kcal/mol (2241.2183 without restraints) Performing minimization step: 4361. Total energy = 2244.5687 kcal/mol (2240.6591 without restraints) Performing minimization step: 4362. Total energy = 2244.0088 kcal/mol (2240.1004 without restraints) Performing minimization step: 4363. Total energy = 2243.4495 kcal/mol (2239.5420 without restraints) Performing minimization step: 4364. Total energy = 2242.8900 kcal/mol (2238.9836 without restraints) Performing minimization step: 4365. Total energy = 2242.3317 kcal/mol (2238.4263 without restraints) Performing minimization step: 4366. Total energy = 2241.7731 kcal/mol (2237.8688 without restraints) Performing minimization step: 4367. Total energy = 2241.2150 kcal/mol (2237.3116 without restraints) Performing minimization step: 4368. Total energy = 2240.6569 kcal/mol (2236.7546 without restraints) Performing minimization step: 4369. Total energy = 2240.0994 kcal/mol (2236.1980 without restraints) Performing minimization step: 4370. Total energy = 2239.5422 kcal/mol (2235.6419 without restraints) Performing minimization step: 4371. Total energy = 2238.9855 kcal/mol (2235.0862 without restraints) Performing minimization step: 4372. Total energy = 2238.4291 kcal/mol (2234.5308 without restraints) Performing minimization step: 4373. Total energy = 2237.8733 kcal/mol (2233.9761 without restraints) Performing minimization step: 4374. Total energy = 2237.3180 kcal/mol (2233.4218 without restraints) Performing minimization step: 4375. Total energy = 2236.7630 kcal/mol (2232.8679 without restraints) Performing minimization step: 4376. Total energy = 2236.2082 kcal/mol (2232.3141 without restraints) Performing minimization step: 4377. Total energy = 2235.6538 kcal/mol (2231.7606 without restraints) Performing minimization step: 4378. Total energy = 2235.0997 kcal/mol (2231.2076 without restraints) Performing minimization step: 4379. Total energy = 2234.5460 kcal/mol (2230.6550 without restraints) Performing minimization step: 4380. Total energy = 2233.9931 kcal/mol (2230.1032 without restraints) Performing minimization step: 4381. Total energy = 2233.4405 kcal/mol (2229.5515 without restraints) Performing minimization step: 4382. Total energy = 2232.8880 kcal/mol (2229.0000 without restraints) Performing minimization step: 4383. Total energy = 2232.3362 kcal/mol (2228.4492 without restraints) Performing minimization step: 4384. Total energy = 2231.7845 kcal/mol (2227.8987 without restraints) Performing minimization step: 4385. Total energy = 2231.2340 kcal/mol (2227.3491 without restraints) Performing minimization step: 4386. Total energy = 2230.6830 kcal/mol (2226.7992 without restraints) Performing minimization step: 4387. Total energy = 2230.1328 kcal/mol (2226.2501 without restraints) Performing minimization step: 4388. Total energy = 2229.5829 kcal/mol (2225.7011 without restraints) Performing minimization step: 4389. Total energy = 2229.0332 kcal/mol (2225.1524 without restraints) Performing minimization step: 4390. Total energy = 2228.4839 kcal/mol (2224.6041 without restraints) Performing minimization step: 4391. Total energy = 2227.9353 kcal/mol (2224.0565 without restraints) Performing minimization step: 4392. Total energy = 2227.3868 kcal/mol (2223.5091 without restraints) Performing minimization step: 4393. Total energy = 2226.8385 kcal/mol (2222.9618 without restraints) Performing minimization step: 4394. Total energy = 2226.2906 kcal/mol (2222.4149 without restraints) Performing minimization step: 4395. Total energy = 2225.7434 kcal/mol (2221.8687 without restraints) Performing minimization step: 4396. Total energy = 2225.1971 kcal/mol (2221.3234 without restraints) Performing minimization step: 4397. Total energy = 2224.6504 kcal/mol (2220.7779 without restraints) Performing minimization step: 4398. Total energy = 2224.1045 kcal/mol (2220.2330 without restraints) Performing minimization step: 4399. Total energy = 2223.5585 kcal/mol (2219.6879 without restraints) Performing minimization step: 4400. Total energy = 2223.0131 kcal/mol (2219.1436 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 2222.4680 kcal/mol (2218.5994 without restraints) Performing minimization step: 4402. Total energy = 2221.9230 kcal/mol (2218.0554 without restraints) Performing minimization step: 4403. Total energy = 2221.3783 kcal/mol (2217.5115 without restraints) Performing minimization step: 4404. Total energy = 2220.8338 kcal/mol (2216.9682 without restraints) Performing minimization step: 4405. Total energy = 2220.2901 kcal/mol (2216.4257 without restraints) Performing minimization step: 4406. Total energy = 2219.7467 kcal/mol (2215.8832 without restraints) Performing minimization step: 4407. Total energy = 2219.2036 kcal/mol (2215.3411 without restraints) Performing minimization step: 4408. Total energy = 2218.6614 kcal/mol (2214.7998 without restraints) Performing minimization step: 4409. Total energy = 2218.1189 kcal/mol (2214.2585 without restraints) Performing minimization step: 4410. Total energy = 2217.5771 kcal/mol (2213.7175 without restraints) Performing minimization step: 4411. Total energy = 2217.0357 kcal/mol (2213.1772 without restraints) Performing minimization step: 4412. Total energy = 2216.4946 kcal/mol (2212.6372 without restraints) Performing minimization step: 4413. Total energy = 2215.9546 kcal/mol (2212.0980 without restraints) Performing minimization step: 4414. Total energy = 2215.4143 kcal/mol (2211.5588 without restraints) Performing minimization step: 4415. Total energy = 2214.8744 kcal/mol (2211.0199 without restraints) Performing minimization step: 4416. Total energy = 2214.3350 kcal/mol (2210.4815 without restraints) Performing minimization step: 4417. Total energy = 2213.7955 kcal/mol (2209.9430 without restraints) Performing minimization step: 4418. Total energy = 2213.2566 kcal/mol (2209.4052 without restraints) Performing minimization step: 4419. Total energy = 2212.7182 kcal/mol (2208.8679 without restraints) Performing minimization step: 4420. Total energy = 2212.1801 kcal/mol (2208.3306 without restraints) Performing minimization step: 4421. Total energy = 2211.6425 kcal/mol (2207.7942 without restraints) Performing minimization step: 4422. Total energy = 2211.1051 kcal/mol (2207.2576 without restraints) Performing minimization step: 4423. Total energy = 2210.5680 kcal/mol (2206.7215 without restraints) Performing minimization step: 4424. Total energy = 2210.0313 kcal/mol (2206.1858 without restraints) Performing minimization step: 4425. Total energy = 2209.4949 kcal/mol (2205.6504 without restraints) Performing minimization step: 4426. Total energy = 2208.9591 kcal/mol (2205.1157 without restraints) Performing minimization step: 4427. Total energy = 2208.4234 kcal/mol (2204.5809 without restraints) Performing minimization step: 4428. Total energy = 2207.8880 kcal/mol (2204.0466 without restraints) Performing minimization step: 4429. Total energy = 2207.3531 kcal/mol (2203.5126 without restraints) Performing minimization step: 4430. Total energy = 2206.8185 kcal/mol (2202.9789 without restraints) Performing minimization step: 4431. Total energy = 2206.2841 kcal/mol (2202.4457 without restraints) Performing minimization step: 4432. Total energy = 2205.7501 kcal/mol (2201.9127 without restraints) Performing minimization step: 4433. Total energy = 2205.2169 kcal/mol (2201.3805 without restraints) Performing minimization step: 4434. Total energy = 2204.6839 kcal/mol (2200.8484 without restraints) Performing minimization step: 4435. Total energy = 2204.1510 kcal/mol (2200.3165 without restraints) Performing minimization step: 4436. Total energy = 2203.6192 kcal/mol (2199.7857 without restraints) Performing minimization step: 4437. Total energy = 2203.0874 kcal/mol (2199.2551 without restraints) Performing minimization step: 4438. Total energy = 2202.5561 kcal/mol (2198.7246 without restraints) Performing minimization step: 4439. Total energy = 2202.0245 kcal/mol (2198.1939 without restraints) Performing minimization step: 4440. Total energy = 2201.4939 kcal/mol (2197.6643 without restraints) Performing minimization step: 4441. Total energy = 2200.9635 kcal/mol (2197.1348 without restraints) Performing minimization step: 4442. Total energy = 2200.4332 kcal/mol (2196.6056 without restraints) Performing minimization step: 4443. Total energy = 2199.9036 kcal/mol (2196.0770 without restraints) Performing minimization step: 4444. Total energy = 2199.3744 kcal/mol (2195.5488 without restraints) Performing minimization step: 4445. Total energy = 2198.8451 kcal/mol (2195.0205 without restraints) Performing minimization step: 4446. Total energy = 2198.3166 kcal/mol (2194.4930 without restraints) Performing minimization step: 4447. Total energy = 2197.7880 kcal/mol (2193.9654 without restraints) Performing minimization step: 4448. Total energy = 2197.2604 kcal/mol (2193.4387 without restraints) Performing minimization step: 4449. Total energy = 2196.7325 kcal/mol (2192.9119 without restraints) Performing minimization step: 4450. Total energy = 2196.2051 kcal/mol (2192.3855 without restraints) Performing minimization step: 4451. Total energy = 2195.6780 kcal/mol (2191.8593 without restraints) Performing minimization step: 4452. Total energy = 2195.1510 kcal/mol (2191.3333 without restraints) Performing minimization step: 4453. Total energy = 2194.6248 kcal/mol (2190.8081 without restraints) Performing minimization step: 4454. Total energy = 2194.0988 kcal/mol (2190.2831 without restraints) Performing minimization step: 4455. Total energy = 2193.5732 kcal/mol (2189.7584 without restraints) Performing minimization step: 4456. Total energy = 2193.0478 kcal/mol (2189.2340 without restraints) Performing minimization step: 4457. Total energy = 2192.5232 kcal/mol (2188.7104 without restraints) Performing minimization step: 4458. Total energy = 2191.9989 kcal/mol (2188.1872 without restraints) Performing minimization step: 4459. Total energy = 2191.4747 kcal/mol (2187.6639 without restraints) Performing minimization step: 4460. Total energy = 2190.9511 kcal/mol (2187.1412 without restraints) Performing minimization step: 4461. Total energy = 2190.4277 kcal/mol (2186.6188 without restraints) Performing minimization step: 4462. Total energy = 2189.9046 kcal/mol (2186.0969 without restraints) Performing minimization step: 4463. Total energy = 2189.3819 kcal/mol (2185.5750 without restraints) Performing minimization step: 4464. Total energy = 2188.8596 kcal/mol (2185.0537 without restraints) Performing minimization step: 4465. Total energy = 2188.3375 kcal/mol (2184.5325 without restraints) Performing minimization step: 4466. Total energy = 2187.8158 kcal/mol (2184.0118 without restraints) Performing minimization step: 4467. Total energy = 2187.2949 kcal/mol (2183.4919 without restraints) Performing minimization step: 4468. Total energy = 2186.7744 kcal/mol (2182.9725 without restraints) Performing minimization step: 4469. Total energy = 2186.2543 kcal/mol (2182.4533 without restraints) Performing minimization step: 4470. Total energy = 2185.7339 kcal/mol (2181.9339 without restraints) Performing minimization step: 4471. Total energy = 2185.2139 kcal/mol (2181.4148 without restraints) Performing minimization step: 4472. Total energy = 2184.6942 kcal/mol (2180.8961 without restraints) Performing minimization step: 4473. Total energy = 2184.1751 kcal/mol (2180.3779 without restraints) Performing minimization step: 4474. Total energy = 2183.6567 kcal/mol (2179.8605 without restraints) Performing minimization step: 4475. Total energy = 2183.1380 kcal/mol (2179.3428 without restraints) Performing minimization step: 4476. Total energy = 2182.6197 kcal/mol (2178.8254 without restraints) Performing minimization step: 4477. Total energy = 2182.1018 kcal/mol (2178.3085 without restraints) Performing minimization step: 4478. Total energy = 2181.5844 kcal/mol (2177.7921 without restraints) Performing minimization step: 4479. Total energy = 2181.0670 kcal/mol (2177.2757 without restraints) Performing minimization step: 4480. Total energy = 2180.5497 kcal/mol (2176.7594 without restraints) Performing minimization step: 4481. Total energy = 2180.0331 kcal/mol (2176.2437 without restraints) Performing minimization step: 4482. Total energy = 2179.5167 kcal/mol (2175.7283 without restraints) Performing minimization step: 4483. Total energy = 2179.0008 kcal/mol (2175.2134 without restraints) Performing minimization step: 4484. Total energy = 2178.4852 kcal/mol (2174.6987 without restraints) Performing minimization step: 4485. Total energy = 2177.9706 kcal/mol (2174.1850 without restraints) Performing minimization step: 4486. Total energy = 2177.4556 kcal/mol (2173.6711 without restraints) Performing minimization step: 4487. Total energy = 2176.9412 kcal/mol (2173.1578 without restraints) Performing minimization step: 4488. Total energy = 2176.4272 kcal/mol (2172.6446 without restraints) Performing minimization step: 4489. Total energy = 2175.9133 kcal/mol (2172.1316 without restraints) Performing minimization step: 4490. Total energy = 2175.3997 kcal/mol (2171.6189 without restraints) Performing minimization step: 4491. Total energy = 2174.8866 kcal/mol (2171.1068 without restraints) Performing minimization step: 4492. Total energy = 2174.3737 kcal/mol (2170.5949 without restraints) Performing minimization step: 4493. Total energy = 2173.8612 kcal/mol (2170.0834 without restraints) Performing minimization step: 4494. Total energy = 2173.3496 kcal/mol (2169.5728 without restraints) Performing minimization step: 4495. Total energy = 2172.8382 kcal/mol (2169.0624 without restraints) Performing minimization step: 4496. Total energy = 2172.3271 kcal/mol (2168.5522 without restraints) Performing minimization step: 4497. Total energy = 2171.8160 kcal/mol (2168.0421 without restraints) Performing minimization step: 4498. Total energy = 2171.3054 kcal/mol (2167.5323 without restraints) Performing minimization step: 4499. Total energy = 2170.7949 kcal/mol (2167.0228 without restraints) Performing minimization step: 4500. Total energy = 2170.2849 kcal/mol (2166.5137 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 2169.7754 kcal/mol (2166.0053 without restraints) Performing minimization step: 4502. Total energy = 2169.2665 kcal/mol (2165.4974 without restraints) Performing minimization step: 4503. Total energy = 2168.7573 kcal/mol (2164.9891 without restraints) Performing minimization step: 4504. Total energy = 2168.2484 kcal/mol (2164.4812 without restraints) Performing minimization step: 4505. Total energy = 2167.7403 kcal/mol (2163.9740 without restraints) Performing minimization step: 4506. Total energy = 2167.2323 kcal/mol (2163.4669 without restraints) Performing minimization step: 4507. Total energy = 2166.7246 kcal/mol (2162.9601 without restraints) Performing minimization step: 4508. Total energy = 2166.2172 kcal/mol (2162.4537 without restraints) Performing minimization step: 4509. Total energy = 2165.7099 kcal/mol (2161.9474 without restraints) Performing minimization step: 4510. Total energy = 2165.2032 kcal/mol (2161.4416 without restraints) Performing minimization step: 4511. Total energy = 2164.6966 kcal/mol (2160.9360 without restraints) Performing minimization step: 4512. Total energy = 2164.1904 kcal/mol (2160.4307 without restraints) Performing minimization step: 4513. Total energy = 2163.6851 kcal/mol (2159.9264 without restraints) Performing minimization step: 4514. Total energy = 2163.1796 kcal/mol (2159.4218 without restraints) Performing minimization step: 4515. Total energy = 2162.6744 kcal/mol (2158.9176 without restraints) Performing minimization step: 4516. Total energy = 2162.1697 kcal/mol (2158.4138 without restraints) Performing minimization step: 4517. Total energy = 2161.6648 kcal/mol (2157.9099 without restraints) Performing minimization step: 4518. Total energy = 2161.1606 kcal/mol (2157.4066 without restraints) Performing minimization step: 4519. Total energy = 2160.6569 kcal/mol (2156.9038 without restraints) Performing minimization step: 4520. Total energy = 2160.1532 kcal/mol (2156.4011 without restraints) Performing minimization step: 4521. Total energy = 2159.6499 kcal/mol (2155.8987 without restraints) Performing minimization step: 4522. Total energy = 2159.1467 kcal/mol (2155.3965 without restraints) Performing minimization step: 4523. Total energy = 2158.6441 kcal/mol (2154.8948 without restraints) Performing minimization step: 4524. Total energy = 2158.1420 kcal/mol (2154.3937 without restraints) Performing minimization step: 4525. Total energy = 2157.6404 kcal/mol (2153.8931 without restraints) Performing minimization step: 4526. Total energy = 2157.1388 kcal/mol (2153.3923 without restraints) Performing minimization step: 4527. Total energy = 2156.6375 kcal/mol (2152.8920 without restraints) Performing minimization step: 4528. Total energy = 2156.1369 kcal/mol (2152.3923 without restraints) Performing minimization step: 4529. Total energy = 2155.6364 kcal/mol (2151.8928 without restraints) Performing minimization step: 4530. Total energy = 2155.1360 kcal/mol (2151.3933 without restraints) Performing minimization step: 4531. Total energy = 2154.6361 kcal/mol (2150.8944 without restraints) Performing minimization step: 4532. Total energy = 2154.1364 kcal/mol (2150.3955 without restraints) Performing minimization step: 4533. Total energy = 2153.6372 kcal/mol (2149.8973 without restraints) Performing minimization step: 4534. Total energy = 2153.1381 kcal/mol (2149.3992 without restraints) Performing minimization step: 4535. Total energy = 2152.6394 kcal/mol (2148.9014 without restraints) Performing minimization step: 4536. Total energy = 2152.1410 kcal/mol (2148.4039 without restraints) Performing minimization step: 4537. Total energy = 2151.6432 kcal/mol (2147.9071 without restraints) Performing minimization step: 4538. Total energy = 2151.1457 kcal/mol (2147.4108 without restraints) Performing minimization step: 4539. Total energy = 2150.6487 kcal/mol (2146.9145 without restraints) Performing minimization step: 4540. Total energy = 2150.1516 kcal/mol (2146.4183 without restraints) Performing minimization step: 4541. Total energy = 2149.6548 kcal/mol (2145.9225 without restraints) Performing minimization step: 4542. Total energy = 2149.1584 kcal/mol (2145.4270 without restraints) Performing minimization step: 4543. Total energy = 2148.6629 kcal/mol (2144.9325 without restraints) Performing minimization step: 4544. Total energy = 2148.1671 kcal/mol (2144.4375 without restraints) Performing minimization step: 4545. Total energy = 2147.6718 kcal/mol (2143.9431 without restraints) Performing minimization step: 4546. Total energy = 2147.1770 kcal/mol (2143.4493 without restraints) Performing minimization step: 4547. Total energy = 2146.6823 kcal/mol (2142.9555 without restraints) Performing minimization step: 4548. Total energy = 2146.1881 kcal/mol (2142.4622 without restraints) Performing minimization step: 4549. Total energy = 2145.6944 kcal/mol (2141.9697 without restraints) Performing minimization step: 4550. Total energy = 2145.2007 kcal/mol (2141.4768 without restraints) Performing minimization step: 4551. Total energy = 2144.7078 kcal/mol (2140.9847 without restraints) Performing minimization step: 4552. Total energy = 2144.2145 kcal/mol (2140.4924 without restraints) Performing minimization step: 4553. Total energy = 2143.7218 kcal/mol (2140.0006 without restraints) Performing minimization step: 4554. Total energy = 2143.2289 kcal/mol (2139.5085 without restraints) Performing minimization step: 4555. Total energy = 2142.7367 kcal/mol (2139.0173 without restraints) Performing minimization step: 4556. Total energy = 2142.2446 kcal/mol (2138.5262 without restraints) Performing minimization step: 4557. Total energy = 2141.7530 kcal/mol (2138.0353 without restraints) Performing minimization step: 4558. Total energy = 2141.2614 kcal/mol (2137.5448 without restraints) Performing minimization step: 4559. Total energy = 2140.7703 kcal/mol (2137.0548 without restraints) Performing minimization step: 4560. Total energy = 2140.2797 kcal/mol (2136.5649 without restraints) Performing minimization step: 4561. Total energy = 2139.7892 kcal/mol (2136.0754 without restraints) Performing minimization step: 4562. Total energy = 2139.2989 kcal/mol (2135.5859 without restraints) Performing minimization step: 4563. Total energy = 2138.8090 kcal/mol (2135.0970 without restraints) Performing minimization step: 4564. Total energy = 2138.3197 kcal/mol (2134.6087 without restraints) Performing minimization step: 4565. Total energy = 2137.8304 kcal/mol (2134.1203 without restraints) Performing minimization step: 4566. Total energy = 2137.3421 kcal/mol (2133.6328 without restraints) Performing minimization step: 4567. Total energy = 2136.8536 kcal/mol (2133.1453 without restraints) Performing minimization step: 4568. Total energy = 2136.3654 kcal/mol (2132.6580 without restraints) Performing minimization step: 4569. Total energy = 2135.8774 kcal/mol (2132.1709 without restraints) Performing minimization step: 4570. Total energy = 2135.3901 kcal/mol (2131.6845 without restraints) Performing minimization step: 4571. Total energy = 2134.9035 kcal/mol (2131.1988 without restraints) Performing minimization step: 4572. Total energy = 2134.4166 kcal/mol (2130.7130 without restraints) Performing minimization step: 4573. Total energy = 2133.9300 kcal/mol (2130.2271 without restraints) Performing minimization step: 4574. Total energy = 2133.4435 kcal/mol (2129.7416 without restraints) Performing minimization step: 4575. Total energy = 2132.9575 kcal/mol (2129.2565 without restraints) Performing minimization step: 4576. Total energy = 2132.4721 kcal/mol (2128.7721 without restraints) Performing minimization step: 4577. Total energy = 2131.9873 kcal/mol (2128.2881 without restraints) Performing minimization step: 4578. Total energy = 2131.5020 kcal/mol (2127.8037 without restraints) Performing minimization step: 4579. Total energy = 2131.0172 kcal/mol (2127.3199 without restraints) Performing minimization step: 4580. Total energy = 2130.5328 kcal/mol (2126.8365 without restraints) Performing minimization step: 4581. Total energy = 2130.0487 kcal/mol (2126.3531 without restraints) Performing minimization step: 4582. Total energy = 2129.5646 kcal/mol (2125.8700 without restraints) Performing minimization step: 4583. Total energy = 2129.0809 kcal/mol (2125.3872 without restraints) Performing minimization step: 4584. Total energy = 2128.5976 kcal/mol (2124.9049 without restraints) Performing minimization step: 4585. Total energy = 2128.1146 kcal/mol (2124.4227 without restraints) Performing minimization step: 4586. Total energy = 2127.6316 kcal/mol (2123.9406 without restraints) Performing minimization step: 4587. Total energy = 2127.1491 kcal/mol (2123.4590 without restraints) Performing minimization step: 4588. Total energy = 2126.6674 kcal/mol (2122.9782 without restraints) Performing minimization step: 4589. Total energy = 2126.1855 kcal/mol (2122.4972 without restraints) Performing minimization step: 4590. Total energy = 2125.7041 kcal/mol (2122.0169 without restraints) Performing minimization step: 4591. Total energy = 2125.2232 kcal/mol (2121.5368 without restraints) Performing minimization step: 4592. Total energy = 2124.7427 kcal/mol (2121.0572 without restraints) Performing minimization step: 4593. Total energy = 2124.2624 kcal/mol (2120.5777 without restraints) Performing minimization step: 4594. Total energy = 2123.7823 kcal/mol (2120.0985 without restraints) Performing minimization step: 4595. Total energy = 2123.3024 kcal/mol (2119.6196 without restraints) Performing minimization step: 4596. Total energy = 2122.8230 kcal/mol (2119.1411 without restraints) Performing minimization step: 4597. Total energy = 2122.3438 kcal/mol (2118.6628 without restraints) Performing minimization step: 4598. Total energy = 2121.8647 kcal/mol (2118.1845 without restraints) Performing minimization step: 4599. Total energy = 2121.3859 kcal/mol (2117.7066 without restraints) Performing minimization step: 4600. Total energy = 2120.9075 kcal/mol (2117.2291 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 2120.4294 kcal/mol (2116.7519 without restraints) Performing minimization step: 4602. Total energy = 2119.9515 kcal/mol (2116.2750 without restraints) Performing minimization step: 4603. Total energy = 2119.4743 kcal/mol (2115.7987 without restraints) Performing minimization step: 4604. Total energy = 2118.9976 kcal/mol (2115.3230 without restraints) Performing minimization step: 4605. Total energy = 2118.5209 kcal/mol (2114.8470 without restraints) Performing minimization step: 4606. Total energy = 2118.0442 kcal/mol (2114.3713 without restraints) Performing minimization step: 4607. Total energy = 2117.5680 kcal/mol (2113.8960 without restraints) Performing minimization step: 4608. Total energy = 2117.0922 kcal/mol (2113.4210 without restraints) Performing minimization step: 4609. Total energy = 2116.6163 kcal/mol (2112.9460 without restraints) Performing minimization step: 4610. Total energy = 2116.1411 kcal/mol (2112.4718 without restraints) Performing minimization step: 4611. Total energy = 2115.6659 kcal/mol (2111.9973 without restraints) Performing minimization step: 4612. Total energy = 2115.1909 kcal/mol (2111.5232 without restraints) Performing minimization step: 4613. Total energy = 2114.7163 kcal/mol (2111.0497 without restraints) Performing minimization step: 4614. Total energy = 2114.2425 kcal/mol (2110.5766 without restraints) Performing minimization step: 4615. Total energy = 2113.7685 kcal/mol (2110.1036 without restraints) Performing minimization step: 4616. Total energy = 2113.2954 kcal/mol (2109.6314 without restraints) Performing minimization step: 4617. Total energy = 2112.8220 kcal/mol (2109.1589 without restraints) Performing minimization step: 4618. Total energy = 2112.3491 kcal/mol (2108.6868 without restraints) Performing minimization step: 4619. Total energy = 2111.8763 kcal/mol (2108.2150 without restraints) Performing minimization step: 4620. Total energy = 2111.4043 kcal/mol (2107.7439 without restraints) Performing minimization step: 4621. Total energy = 2110.9321 kcal/mol (2107.2725 without restraints) Performing minimization step: 4622. Total energy = 2110.4604 kcal/mol (2106.8017 without restraints) Performing minimization step: 4623. Total energy = 2109.9890 kcal/mol (2106.3311 without restraints) Performing minimization step: 4624. Total energy = 2109.5178 kcal/mol (2105.8608 without restraints) Performing minimization step: 4625. Total energy = 2109.0466 kcal/mol (2105.3906 without restraints) Performing minimization step: 4626. Total energy = 2108.5758 kcal/mol (2104.9205 without restraints) Performing minimization step: 4627. Total energy = 2108.1057 kcal/mol (2104.4515 without restraints) Performing minimization step: 4628. Total energy = 2107.6356 kcal/mol (2103.9823 without restraints) Performing minimization step: 4629. Total energy = 2107.1659 kcal/mol (2103.5133 without restraints) Performing minimization step: 4630. Total energy = 2106.6962 kcal/mol (2103.0446 without restraints) Performing minimization step: 4631. Total energy = 2106.2271 kcal/mol (2102.5762 without restraints) Performing minimization step: 4632. Total energy = 2105.7583 kcal/mol (2102.1084 without restraints) Performing minimization step: 4633. Total energy = 2105.2895 kcal/mol (2101.6404 without restraints) Performing minimization step: 4634. Total energy = 2104.8212 kcal/mol (2101.1730 without restraints) Performing minimization step: 4635. Total energy = 2104.3529 kcal/mol (2100.7056 without restraints) Performing minimization step: 4636. Total energy = 2103.8851 kcal/mol (2100.2386 without restraints) Performing minimization step: 4637. Total energy = 2103.4176 kcal/mol (2099.7720 without restraints) Performing minimization step: 4638. Total energy = 2102.9502 kcal/mol (2099.3055 without restraints) Performing minimization step: 4639. Total energy = 2102.4835 kcal/mol (2098.8397 without restraints) Performing minimization step: 4640. Total energy = 2102.0172 kcal/mol (2098.3743 without restraints) Performing minimization step: 4641. Total energy = 2101.5506 kcal/mol (2097.9088 without restraints) Performing minimization step: 4642. Total energy = 2101.0845 kcal/mol (2097.4434 without restraints) Performing minimization step: 4643. Total energy = 2100.6186 kcal/mol (2096.9783 without restraints) Performing minimization step: 4644. Total energy = 2100.1529 kcal/mol (2096.5135 without restraints) Performing minimization step: 4645. Total energy = 2099.6875 kcal/mol (2096.0489 without restraints) Performing minimization step: 4646. Total energy = 2099.2225 kcal/mol (2095.5849 without restraints) Performing minimization step: 4647. Total energy = 2098.7588 kcal/mol (2095.1222 without restraints) Performing minimization step: 4648. Total energy = 2098.2947 kcal/mol (2094.6588 without restraints) Performing minimization step: 4649. Total energy = 2097.8304 kcal/mol (2094.1954 without restraints) Performing minimization step: 4650. Total energy = 2097.3666 kcal/mol (2093.7322 without restraints) Performing minimization step: 4651. Total energy = 2096.9027 kcal/mol (2093.2694 without restraints) Performing minimization step: 4652. Total energy = 2096.4393 kcal/mol (2092.8069 without restraints) Performing minimization step: 4653. Total energy = 2095.9762 kcal/mol (2092.3447 without restraints) Performing minimization step: 4654. Total energy = 2095.5135 kcal/mol (2091.8829 without restraints) Performing minimization step: 4655. Total energy = 2095.0511 kcal/mol (2091.4213 without restraints) Performing minimization step: 4656. Total energy = 2094.5892 kcal/mol (2090.9602 without restraints) Performing minimization step: 4657. Total energy = 2094.1274 kcal/mol (2090.4992 without restraints) Performing minimization step: 4658. Total energy = 2093.6656 kcal/mol (2090.0384 without restraints) Performing minimization step: 4659. Total energy = 2093.2042 kcal/mol (2089.5778 without restraints) Performing minimization step: 4660. Total energy = 2092.7430 kcal/mol (2089.1174 without restraints) Performing minimization step: 4661. Total energy = 2092.2821 kcal/mol (2088.6575 without restraints) Performing minimization step: 4662. Total energy = 2091.8220 kcal/mol (2088.1985 without restraints) Performing minimization step: 4663. Total energy = 2091.3622 kcal/mol (2087.7393 without restraints) Performing minimization step: 4664. Total energy = 2090.9026 kcal/mol (2087.2806 without restraints) Performing minimization step: 4665. Total energy = 2090.4429 kcal/mol (2086.8217 without restraints) Performing minimization step: 4666. Total energy = 2089.9832 kcal/mol (2086.3629 without restraints) Performing minimization step: 4667. Total energy = 2089.5245 kcal/mol (2085.9050 without restraints) Performing minimization step: 4668. Total energy = 2089.0655 kcal/mol (2085.4469 without restraints) Performing minimization step: 4669. Total energy = 2088.6069 kcal/mol (2084.9891 without restraints) Performing minimization step: 4670. Total energy = 2088.1491 kcal/mol (2084.5323 without restraints) Performing minimization step: 4671. Total energy = 2087.6915 kcal/mol (2084.0755 without restraints) Performing minimization step: 4672. Total energy = 2087.2338 kcal/mol (2083.6186 without restraints) Performing minimization step: 4673. Total energy = 2086.7765 kcal/mol (2083.1621 without restraints) Performing minimization step: 4674. Total energy = 2086.3199 kcal/mol (2082.7065 without restraints) Performing minimization step: 4675. Total energy = 2085.8632 kcal/mol (2082.2506 without restraints) Performing minimization step: 4676. Total energy = 2085.4069 kcal/mol (2081.7951 without restraints) Performing minimization step: 4677. Total energy = 2084.9507 kcal/mol (2081.3398 without restraints) Performing minimization step: 4678. Total energy = 2084.4952 kcal/mol (2080.8852 without restraints) Performing minimization step: 4679. Total energy = 2084.0396 kcal/mol (2080.4304 without restraints) Performing minimization step: 4680. Total energy = 2083.5839 kcal/mol (2079.9755 without restraints) Performing minimization step: 4681. Total energy = 2083.1286 kcal/mol (2079.5211 without restraints) Performing minimization step: 4682. Total energy = 2082.6738 kcal/mol (2079.0671 without restraints) Performing minimization step: 4683. Total energy = 2082.2193 kcal/mol (2078.6135 without restraints) Performing minimization step: 4684. Total energy = 2081.7649 kcal/mol (2078.1600 without restraints) Performing minimization step: 4685. Total energy = 2081.3110 kcal/mol (2077.7070 without restraints) Performing minimization step: 4686. Total energy = 2080.8572 kcal/mol (2077.2540 without restraints) Performing minimization step: 4687. Total energy = 2080.4038 kcal/mol (2076.8014 without restraints) Performing minimization step: 4688. Total energy = 2079.9507 kcal/mol (2076.3491 without restraints) Performing minimization step: 4689. Total energy = 2079.4978 kcal/mol (2075.8973 without restraints) Performing minimization step: 4690. Total energy = 2079.0451 kcal/mol (2075.4452 without restraints) Performing minimization step: 4691. Total energy = 2078.5928 kcal/mol (2074.9937 without restraints) Performing minimization step: 4692. Total energy = 2078.1410 kcal/mol (2074.5428 without restraints) Performing minimization step: 4693. Total energy = 2077.6894 kcal/mol (2074.0921 without restraints) Performing minimization step: 4694. Total energy = 2077.2380 kcal/mol (2073.6414 without restraints) Performing minimization step: 4695. Total energy = 2076.7866 kcal/mol (2073.1910 without restraints) Performing minimization step: 4696. Total energy = 2076.3358 kcal/mol (2072.7412 without restraints) Performing minimization step: 4697. Total energy = 2075.8855 kcal/mol (2072.2916 without restraints) Performing minimization step: 4698. Total energy = 2075.4349 kcal/mol (2071.8418 without restraints) Performing minimization step: 4699. Total energy = 2074.9850 kcal/mol (2071.3927 without restraints) Performing minimization step: 4700. Total energy = 2074.5353 kcal/mol (2070.9438 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 2074.0856 kcal/mol (2070.4952 without restraints) Performing minimization step: 4702. Total energy = 2073.6368 kcal/mol (2070.0472 without restraints) Performing minimization step: 4703. Total energy = 2073.1875 kcal/mol (2069.5985 without restraints) Performing minimization step: 4704. Total energy = 2072.7384 kcal/mol (2069.1502 without restraints) Performing minimization step: 4705. Total energy = 2072.2896 kcal/mol (2068.7023 without restraints) Performing minimization step: 4706. Total energy = 2071.8410 kcal/mol (2068.2545 without restraints) Performing minimization step: 4707. Total energy = 2071.3927 kcal/mol (2067.8071 without restraints) Performing minimization step: 4708. Total energy = 2070.9448 kcal/mol (2067.3602 without restraints) Performing minimization step: 4709. Total energy = 2070.4973 kcal/mol (2066.9134 without restraints) Performing minimization step: 4710. Total energy = 2070.0500 kcal/mol (2066.4671 without restraints) Performing minimization step: 4711. Total energy = 2069.6031 kcal/mol (2066.0208 without restraints) Performing minimization step: 4712. Total energy = 2069.1565 kcal/mol (2065.5750 without restraints) Performing minimization step: 4713. Total energy = 2068.7099 kcal/mol (2065.1295 without restraints) Performing minimization step: 4714. Total energy = 2068.2637 kcal/mol (2064.6839 without restraints) Performing minimization step: 4715. Total energy = 2067.8176 kcal/mol (2064.2385 without restraints) Performing minimization step: 4716. Total energy = 2067.3716 kcal/mol (2063.7935 without restraints) Performing minimization step: 4717. Total energy = 2066.9261 kcal/mol (2063.3488 without restraints) Performing minimization step: 4718. Total energy = 2066.4811 kcal/mol (2062.9047 without restraints) Performing minimization step: 4719. Total energy = 2066.0360 kcal/mol (2062.4604 without restraints) Performing minimization step: 4720. Total energy = 2065.5912 kcal/mol (2062.0164 without restraints) Performing minimization step: 4721. Total energy = 2065.1469 kcal/mol (2061.5730 without restraints) Performing minimization step: 4722. Total energy = 2064.7029 kcal/mol (2061.1299 without restraints) Performing minimization step: 4723. Total energy = 2064.2590 kcal/mol (2060.6867 without restraints) Performing minimization step: 4724. Total energy = 2063.8154 kcal/mol (2060.2440 without restraints) Performing minimization step: 4725. Total energy = 2063.3719 kcal/mol (2059.8012 without restraints) Performing minimization step: 4726. Total energy = 2062.9292 kcal/mol (2059.3594 without restraints) Performing minimization step: 4727. Total energy = 2062.4871 kcal/mol (2058.9182 without restraints) Performing minimization step: 4728. Total energy = 2062.0448 kcal/mol (2058.4766 without restraints) Performing minimization step: 4729. Total energy = 2061.6026 kcal/mol (2058.0352 without restraints) Performing minimization step: 4730. Total energy = 2061.1605 kcal/mol (2057.5939 without restraints) Performing minimization step: 4731. Total energy = 2060.7193 kcal/mol (2057.1537 without restraints) Performing minimization step: 4732. Total energy = 2060.2783 kcal/mol (2056.7134 without restraints) Performing minimization step: 4733. Total energy = 2059.8371 kcal/mol (2056.2730 without restraints) Performing minimization step: 4734. Total energy = 2059.3960 kcal/mol (2055.8327 without restraints) Performing minimization step: 4735. Total energy = 2058.9557 kcal/mol (2055.3932 without restraints) Performing minimization step: 4736. Total energy = 2058.5154 kcal/mol (2054.9538 without restraints) Performing minimization step: 4737. Total energy = 2058.0756 kcal/mol (2054.5149 without restraints) Performing minimization step: 4738. Total energy = 2057.6355 kcal/mol (2054.0755 without restraints) Performing minimization step: 4739. Total energy = 2057.1959 kcal/mol (2053.6368 without restraints) Performing minimization step: 4740. Total energy = 2056.7569 kcal/mol (2053.1985 without restraints) Performing minimization step: 4741. Total energy = 2056.3171 kcal/mol (2052.7596 without restraints) Performing minimization step: 4742. Total energy = 2055.8782 kcal/mol (2052.3215 without restraints) Performing minimization step: 4743. Total energy = 2055.4395 kcal/mol (2051.8836 without restraints) Performing minimization step: 4744. Total energy = 2055.0011 kcal/mol (2051.4462 without restraints) Performing minimization step: 4745. Total energy = 2054.5636 kcal/mol (2051.0093 without restraints) Performing minimization step: 4746. Total energy = 2054.1258 kcal/mol (2050.5723 without restraints) Performing minimization step: 4747. Total energy = 2053.6884 kcal/mol (2050.1358 without restraints) Performing minimization step: 4748. Total energy = 2053.2512 kcal/mol (2049.6995 without restraints) Performing minimization step: 4749. Total energy = 2052.8148 kcal/mol (2049.2638 without restraints) Performing minimization step: 4750. Total energy = 2052.3781 kcal/mol (2048.8279 without restraints) Performing minimization step: 4751. Total energy = 2051.9415 kcal/mol (2048.3921 without restraints) Performing minimization step: 4752. Total energy = 2051.5050 kcal/mol (2047.9565 without restraints) Performing minimization step: 4753. Total energy = 2051.0695 kcal/mol (2047.5219 without restraints) Performing minimization step: 4754. Total energy = 2050.6338 kcal/mol (2047.0868 without restraints) Performing minimization step: 4755. Total energy = 2050.1981 kcal/mol (2046.6520 without restraints) Performing minimization step: 4756. Total energy = 2049.7629 kcal/mol (2046.2178 without restraints) Performing minimization step: 4757. Total energy = 2049.3279 kcal/mol (2045.7834 without restraints) Performing minimization step: 4758. Total energy = 2048.8928 kcal/mol (2045.3490 without restraints) Performing minimization step: 4759. Total energy = 2048.4583 kcal/mol (2044.9153 without restraints) Performing minimization step: 4760. Total energy = 2048.0238 kcal/mol (2044.4816 without restraints) Performing minimization step: 4761. Total energy = 2047.5901 kcal/mol (2044.0488 without restraints) Performing minimization step: 4762. Total energy = 2047.1562 kcal/mol (2043.6157 without restraints) Performing minimization step: 4763. Total energy = 2046.7228 kcal/mol (2043.1831 without restraints) Performing minimization step: 4764. Total energy = 2046.2894 kcal/mol (2042.7505 without restraints) Performing minimization step: 4765. Total energy = 2045.8564 kcal/mol (2042.3183 without restraints) Performing minimization step: 4766. Total energy = 2045.4236 kcal/mol (2041.8863 without restraints) Performing minimization step: 4767. Total energy = 2044.9915 kcal/mol (2041.4550 without restraints) Performing minimization step: 4768. Total energy = 2044.5590 kcal/mol (2041.0233 without restraints) Performing minimization step: 4769. Total energy = 2044.1273 kcal/mol (2040.5924 without restraints) Performing minimization step: 4770. Total energy = 2043.6955 kcal/mol (2040.1613 without restraints) Performing minimization step: 4771. Total energy = 2043.2640 kcal/mol (2039.7307 without restraints) Performing minimization step: 4772. Total energy = 2042.8335 kcal/mol (2039.3010 without restraints) Performing minimization step: 4773. Total energy = 2042.4025 kcal/mol (2038.8710 without restraints) Performing minimization step: 4774. Total energy = 2041.9721 kcal/mol (2038.4412 without restraints) Performing minimization step: 4775. Total energy = 2041.5412 kcal/mol (2038.0111 without restraints) Performing minimization step: 4776. Total energy = 2041.1111 kcal/mol (2037.5818 without restraints) Performing minimization step: 4777. Total energy = 2040.6810 kcal/mol (2037.1524 without restraints) Performing minimization step: 4778. Total energy = 2040.2513 kcal/mol (2036.7237 without restraints) Performing minimization step: 4779. Total energy = 2039.8220 kcal/mol (2036.2950 without restraints) Performing minimization step: 4780. Total energy = 2039.3926 kcal/mol (2035.8665 without restraints) Performing minimization step: 4781. Total energy = 2038.9635 kcal/mol (2035.4381 without restraints) Performing minimization step: 4782. Total energy = 2038.5345 kcal/mol (2035.0098 without restraints) Performing minimization step: 4783. Total energy = 2038.1058 kcal/mol (2034.5821 without restraints) Performing minimization step: 4784. Total energy = 2037.6775 kcal/mol (2034.1543 without restraints) Performing minimization step: 4785. Total energy = 2037.2494 kcal/mol (2033.7274 without restraints) Performing minimization step: 4786. Total energy = 2036.8220 kcal/mol (2033.3006 without restraints) Performing minimization step: 4787. Total energy = 2036.3943 kcal/mol (2032.8737 without restraints) Performing minimization step: 4788. Total energy = 2035.9674 kcal/mol (2032.4476 without restraints) Performing minimization step: 4789. Total energy = 2035.5402 kcal/mol (2032.0212 without restraints) Performing minimization step: 4790. Total energy = 2035.1138 kcal/mol (2031.5955 without restraints) Performing minimization step: 4791. Total energy = 2034.6875 kcal/mol (2031.1702 without restraints) Performing minimization step: 4792. Total energy = 2034.2613 kcal/mol (2030.7448 without restraints) Performing minimization step: 4793. Total energy = 2033.8358 kcal/mol (2030.3199 without restraints) Performing minimization step: 4794. Total energy = 2033.4101 kcal/mol (2029.8950 without restraints) Performing minimization step: 4795. Total energy = 2032.9849 kcal/mol (2029.4707 without restraints) Performing minimization step: 4796. Total energy = 2032.5596 kcal/mol (2029.0461 without restraints) Performing minimization step: 4797. Total energy = 2032.1346 kcal/mol (2028.6219 without restraints) Performing minimization step: 4798. Total energy = 2031.7100 kcal/mol (2028.1980 without restraints) Performing minimization step: 4799. Total energy = 2031.2853 kcal/mol (2027.7741 without restraints) Performing minimization step: 4800. Total energy = 2030.8609 kcal/mol (2027.3506 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 2030.4370 kcal/mol (2026.9274 without restraints) Performing minimization step: 4802. Total energy = 2030.0134 kcal/mol (2026.5047 without restraints) Performing minimization step: 4803. Total energy = 2029.5903 kcal/mol (2026.0824 without restraints) Performing minimization step: 4804. Total energy = 2029.1672 kcal/mol (2025.6599 without restraints) Performing minimization step: 4805. Total energy = 2028.7446 kcal/mol (2025.2383 without restraints) Performing minimization step: 4806. Total energy = 2028.3218 kcal/mol (2024.8161 without restraints) Performing minimization step: 4807. Total energy = 2027.8996 kcal/mol (2024.3947 without restraints) Performing minimization step: 4808. Total energy = 2027.4771 kcal/mol (2023.9729 without restraints) Performing minimization step: 4809. Total energy = 2027.0554 kcal/mol (2023.5522 without restraints) Performing minimization step: 4810. Total energy = 2026.6339 kcal/mol (2023.1314 without restraints) Performing minimization step: 4811. Total energy = 2026.2121 kcal/mol (2022.7102 without restraints) Performing minimization step: 4812. Total energy = 2025.7905 kcal/mol (2022.2894 without restraints) Performing minimization step: 4813. Total energy = 2025.3693 kcal/mol (2021.8691 without restraints) Performing minimization step: 4814. Total energy = 2024.9483 kcal/mol (2021.4488 without restraints) Performing minimization step: 4815. Total energy = 2024.5278 kcal/mol (2021.0291 without restraints) Performing minimization step: 4816. Total energy = 2024.1076 kcal/mol (2020.6097 without restraints) Performing minimization step: 4817. Total energy = 2023.6871 kcal/mol (2020.1899 without restraints) Performing minimization step: 4818. Total energy = 2023.2673 kcal/mol (2019.7709 without restraints) Performing minimization step: 4819. Total energy = 2022.8480 kcal/mol (2019.3525 without restraints) Performing minimization step: 4820. Total energy = 2022.4286 kcal/mol (2018.9338 without restraints) Performing minimization step: 4821. Total energy = 2022.0100 kcal/mol (2018.5159 without restraints) Performing minimization step: 4822. Total energy = 2021.5909 kcal/mol (2018.0976 without restraints) Performing minimization step: 4823. Total energy = 2021.1722 kcal/mol (2017.6797 without restraints) Performing minimization step: 4824. Total energy = 2020.7537 kcal/mol (2017.2619 without restraints) Performing minimization step: 4825. Total energy = 2020.3358 kcal/mol (2016.8448 without restraints) Performing minimization step: 4826. Total energy = 2019.9174 kcal/mol (2016.4272 without restraints) Performing minimization step: 4827. Total energy = 2019.4998 kcal/mol (2016.0103 without restraints) Performing minimization step: 4828. Total energy = 2019.0828 kcal/mol (2015.5941 without restraints) Performing minimization step: 4829. Total energy = 2018.6656 kcal/mol (2015.1776 without restraints) Performing minimization step: 4830. Total energy = 2018.2488 kcal/mol (2014.7616 without restraints) Performing minimization step: 4831. Total energy = 2017.8324 kcal/mol (2014.3460 without restraints) Performing minimization step: 4832. Total energy = 2017.4162 kcal/mol (2013.9306 without restraints) Performing minimization step: 4833. Total energy = 2017.0000 kcal/mol (2013.5151 without restraints) Performing minimization step: 4834. Total energy = 2016.5840 kcal/mol (2013.0999 without restraints) Performing minimization step: 4835. Total energy = 2016.1681 kcal/mol (2012.6849 without restraints) Performing minimization step: 4836. Total energy = 2015.7525 kcal/mol (2012.2699 without restraints) Performing minimization step: 4837. Total energy = 2015.3374 kcal/mol (2011.8558 without restraints) Performing minimization step: 4838. Total energy = 2014.9224 kcal/mol (2011.4413 without restraints) Performing minimization step: 4839. Total energy = 2014.5075 kcal/mol (2011.0272 without restraints) Performing minimization step: 4840. Total energy = 2014.0931 kcal/mol (2010.6138 without restraints) Performing minimization step: 4841. Total energy = 2013.6790 kcal/mol (2010.2002 without restraints) Performing minimization step: 4842. Total energy = 2013.2646 kcal/mol (2009.7866 without restraints) Performing minimization step: 4843. Total energy = 2012.8510 kcal/mol (2009.3737 without restraints) Performing minimization step: 4844. Total energy = 2012.4371 kcal/mol (2008.9606 without restraints) Performing minimization step: 4845. Total energy = 2012.0231 kcal/mol (2008.5471 without restraints) Performing minimization step: 4846. Total energy = 2011.6097 kcal/mol (2008.1347 without restraints) Performing minimization step: 4847. Total energy = 2011.1969 kcal/mol (2007.7227 without restraints) Performing minimization step: 4848. Total energy = 2010.7840 kcal/mol (2007.3105 without restraints) Performing minimization step: 4849. Total energy = 2010.3719 kcal/mol (2006.8992 without restraints) Performing minimization step: 4850. Total energy = 2009.9594 kcal/mol (2006.4875 without restraints) Performing minimization step: 4851. Total energy = 2009.5472 kcal/mol (2006.0760 without restraints) Performing minimization step: 4852. Total energy = 2009.1352 kcal/mol (2005.6647 without restraints) Performing minimization step: 4853. Total energy = 2008.7238 kcal/mol (2005.2542 without restraints) Performing minimization step: 4854. Total energy = 2008.3126 kcal/mol (2004.8436 without restraints) Performing minimization step: 4855. Total energy = 2007.9018 kcal/mol (2004.4336 without restraints) Performing minimization step: 4856. Total energy = 2007.4909 kcal/mol (2004.0236 without restraints) Performing minimization step: 4857. Total energy = 2007.0802 kcal/mol (2003.6134 without restraints) Performing minimization step: 4858. Total energy = 2006.6700 kcal/mol (2003.2041 without restraints) Performing minimization step: 4859. Total energy = 2006.2597 kcal/mol (2002.7945 without restraints) Performing minimization step: 4860. Total energy = 2005.8496 kcal/mol (2002.3851 without restraints) Performing minimization step: 4861. Total energy = 2005.4398 kcal/mol (2001.9762 without restraints) Performing minimization step: 4862. Total energy = 2005.0305 kcal/mol (2001.5675 without restraints) Performing minimization step: 4863. Total energy = 2004.6209 kcal/mol (2001.1586 without restraints) Performing minimization step: 4864. Total energy = 2004.2118 kcal/mol (2000.7505 without restraints) Performing minimization step: 4865. Total energy = 2003.8029 kcal/mol (2000.3422 without restraints) Performing minimization step: 4866. Total energy = 2003.3943 kcal/mol (1999.9342 without restraints) Performing minimization step: 4867. Total energy = 2002.9858 kcal/mol (1999.5267 without restraints) Performing minimization step: 4868. Total energy = 2002.5777 kcal/mol (1999.1192 without restraints) Performing minimization step: 4869. Total energy = 2002.1698 kcal/mol (1998.7120 without restraints) Performing minimization step: 4870. Total energy = 2001.7620 kcal/mol (1998.3049 without restraints) Performing minimization step: 4871. Total energy = 2001.3546 kcal/mol (1997.8983 without restraints) Performing minimization step: 4872. Total energy = 2000.9473 kcal/mol (1997.4917 without restraints) Performing minimization step: 4873. Total energy = 2000.5402 kcal/mol (1997.0854 without restraints) Performing minimization step: 4874. Total energy = 2000.1335 kcal/mol (1996.6794 without restraints) Performing minimization step: 4875. Total energy = 1999.7268 kcal/mol (1996.2735 without restraints) Performing minimization step: 4876. Total energy = 1999.3203 kcal/mol (1995.8678 without restraints) Performing minimization step: 4877. Total energy = 1998.9143 kcal/mol (1995.4625 without restraints) Performing minimization step: 4878. Total energy = 1998.5088 kcal/mol (1995.0576 without restraints) Performing minimization step: 4879. Total energy = 1998.1031 kcal/mol (1994.6527 without restraints) Performing minimization step: 4880. Total energy = 1997.6978 kcal/mol (1994.2482 without restraints) Performing minimization step: 4881. Total energy = 1997.2931 kcal/mol (1993.8442 without restraints) Performing minimization step: 4882. Total energy = 1996.8880 kcal/mol (1993.4399 without restraints) Performing minimization step: 4883. Total energy = 1996.4832 kcal/mol (1993.0357 without restraints) Performing minimization step: 4884. Total energy = 1996.0790 kcal/mol (1992.6323 without restraints) Performing minimization step: 4885. Total energy = 1995.6747 kcal/mol (1992.2288 without restraints) Performing minimization step: 4886. Total energy = 1995.2706 kcal/mol (1991.8254 without restraints) Performing minimization step: 4887. Total energy = 1994.8666 kcal/mol (1991.4221 without restraints) Performing minimization step: 4888. Total energy = 1994.4629 kcal/mol (1991.0192 without restraints) Performing minimization step: 4889. Total energy = 1994.0599 kcal/mol (1990.6168 without restraints) Performing minimization step: 4890. Total energy = 1993.6566 kcal/mol (1990.2143 without restraints) Performing minimization step: 4891. Total energy = 1993.2535 kcal/mol (1989.8119 without restraints) Performing minimization step: 4892. Total energy = 1992.8508 kcal/mol (1989.4100 without restraints) Performing minimization step: 4893. Total energy = 1992.4489 kcal/mol (1989.0089 without restraints) Performing minimization step: 4894. Total energy = 1992.0470 kcal/mol (1988.6076 without restraints) Performing minimization step: 4895. Total energy = 1991.6451 kcal/mol (1988.2064 without restraints) Performing minimization step: 4896. Total energy = 1991.2434 kcal/mol (1987.8054 without restraints) Performing minimization step: 4897. Total energy = 1990.8418 kcal/mol (1987.4047 without restraints) Performing minimization step: 4898. Total energy = 1990.4409 kcal/mol (1987.0044 without restraints) Performing minimization step: 4899. Total energy = 1990.0398 kcal/mol (1986.6041 without restraints) Performing minimization step: 4900. Total energy = 1989.6391 kcal/mol (1986.2042 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 1989.2384 kcal/mol (1985.8042 without restraints) Performing minimization step: 4902. Total energy = 1988.8381 kcal/mol (1985.4045 without restraints) Performing minimization step: 4903. Total energy = 1988.4380 kcal/mol (1985.0053 without restraints) Performing minimization step: 4904. Total energy = 1988.0380 kcal/mol (1984.6059 without restraints) Performing minimization step: 4905. Total energy = 1987.6383 kcal/mol (1984.2069 without restraints) Performing minimization step: 4906. Total energy = 1987.2388 kcal/mol (1983.8082 without restraints) Performing minimization step: 4907. Total energy = 1986.8399 kcal/mol (1983.4100 without restraints) Performing minimization step: 4908. Total energy = 1986.4410 kcal/mol (1983.0118 without restraints) Performing minimization step: 4909. Total energy = 1986.0425 kcal/mol (1982.6140 without restraints) Performing minimization step: 4910. Total energy = 1985.6437 kcal/mol (1982.2160 without restraints) Performing minimization step: 4911. Total energy = 1985.2453 kcal/mol (1981.8183 without restraints) Performing minimization step: 4912. Total energy = 1984.8470 kcal/mol (1981.4207 without restraints) Performing minimization step: 4913. Total energy = 1984.4489 kcal/mol (1981.0233 without restraints) Performing minimization step: 4914. Total energy = 1984.0514 kcal/mol (1980.6266 without restraints) Performing minimization step: 4915. Total energy = 1983.6538 kcal/mol (1980.2296 without restraints) Performing minimization step: 4916. Total energy = 1983.2572 kcal/mol (1979.8337 without restraints) Performing minimization step: 4917. Total energy = 1982.8601 kcal/mol (1979.4374 without restraints) Performing minimization step: 4918. Total energy = 1982.4630 kcal/mol (1979.0409 without restraints) Performing minimization step: 4919. Total energy = 1982.0663 kcal/mol (1978.6450 without restraints) Performing minimization step: 4920. Total energy = 1981.6698 kcal/mol (1978.2492 without restraints) Performing minimization step: 4921. Total energy = 1981.2733 kcal/mol (1977.8534 without restraints) Performing minimization step: 4922. Total energy = 1980.8772 kcal/mol (1977.4580 without restraints) Performing minimization step: 4923. Total energy = 1980.4816 kcal/mol (1977.0631 without restraints) Performing minimization step: 4924. Total energy = 1980.0859 kcal/mol (1976.6681 without restraints) Performing minimization step: 4925. Total energy = 1979.6909 kcal/mol (1976.2740 without restraints) Performing minimization step: 4926. Total energy = 1979.2959 kcal/mol (1975.8796 without restraints) Performing minimization step: 4927. Total energy = 1978.9008 kcal/mol (1975.4852 without restraints) Performing minimization step: 4928. Total energy = 1978.5065 kcal/mol (1975.0918 without restraints) Performing minimization step: 4929. Total energy = 1978.1126 kcal/mol (1974.6985 without restraints) Performing minimization step: 4930. Total energy = 1977.7185 kcal/mol (1974.3050 without restraints) Performing minimization step: 4931. Total energy = 1977.3243 kcal/mol (1973.9115 without restraints) Performing minimization step: 4932. Total energy = 1976.9305 kcal/mol (1973.5185 without restraints) Performing minimization step: 4933. Total energy = 1976.5368 kcal/mol (1973.1255 without restraints) Performing minimization step: 4934. Total energy = 1976.1437 kcal/mol (1972.7332 without restraints) Performing minimization step: 4935. Total energy = 1975.7512 kcal/mol (1972.3412 without restraints) Performing minimization step: 4936. Total energy = 1975.3579 kcal/mol (1971.9486 without restraints) Performing minimization step: 4937. Total energy = 1974.9650 kcal/mol (1971.5564 without restraints) Performing minimization step: 4938. Total energy = 1974.5726 kcal/mol (1971.1648 without restraints) Performing minimization step: 4939. Total energy = 1974.1806 kcal/mol (1970.7734 without restraints) Performing minimization step: 4940. Total energy = 1973.7883 kcal/mol (1970.3819 without restraints) Performing minimization step: 4941. Total energy = 1973.3968 kcal/mol (1969.9911 without restraints) Performing minimization step: 4942. Total energy = 1973.0049 kcal/mol (1969.5999 without restraints) Performing minimization step: 4943. Total energy = 1972.6134 kcal/mol (1969.2091 without restraints) Performing minimization step: 4944. Total energy = 1972.2220 kcal/mol (1968.8184 without restraints) Performing minimization step: 4945. Total energy = 1971.8313 kcal/mol (1968.4284 without restraints) Performing minimization step: 4946. Total energy = 1971.4408 kcal/mol (1968.0388 without restraints) Performing minimization step: 4947. Total energy = 1971.0504 kcal/mol (1967.6489 without restraints) Performing minimization step: 4948. Total energy = 1970.6599 kcal/mol (1967.2591 without restraints) Performing minimization step: 4949. Total energy = 1970.2698 kcal/mol (1966.8697 without restraints) Performing minimization step: 4950. Total energy = 1969.8806 kcal/mol (1966.4812 without restraints) Performing minimization step: 4951. Total energy = 1969.4907 kcal/mol (1966.0920 without restraints) Performing minimization step: 4952. Total energy = 1969.1016 kcal/mol (1965.7036 without restraints) Performing minimization step: 4953. Total energy = 1968.7121 kcal/mol (1965.3148 without restraints) Performing minimization step: 4954. Total energy = 1968.3230 kcal/mol (1964.9264 without restraints) Performing minimization step: 4955. Total energy = 1967.9342 kcal/mol (1964.5385 without restraints) Performing minimization step: 4956. Total energy = 1967.5459 kcal/mol (1964.1506 without restraints) Performing minimization step: 4957. Total energy = 1967.1575 kcal/mol (1963.7630 without restraints) Performing minimization step: 4958. Total energy = 1966.7693 kcal/mol (1963.3755 without restraints) Performing minimization step: 4959. Total energy = 1966.3812 kcal/mol (1962.9880 without restraints) Performing minimization step: 4960. Total energy = 1965.9935 kcal/mol (1962.6011 without restraints) Performing minimization step: 4961. Total energy = 1965.6062 kcal/mol (1962.2145 without restraints) Performing minimization step: 4962. Total energy = 1965.2187 kcal/mol (1961.8276 without restraints) Performing minimization step: 4963. Total energy = 1964.8314 kcal/mol (1961.4411 without restraints) Performing minimization step: 4964. Total energy = 1964.4449 kcal/mol (1961.0553 without restraints) Performing minimization step: 4965. Total energy = 1964.0580 kcal/mol (1960.6691 without restraints) Performing minimization step: 4966. Total energy = 1963.6716 kcal/mol (1960.2833 without restraints) Performing minimization step: 4967. Total energy = 1963.2854 kcal/mol (1959.8978 without restraints) Performing minimization step: 4968. Total energy = 1962.8993 kcal/mol (1959.5124 without restraints) Performing minimization step: 4969. Total energy = 1962.5135 kcal/mol (1959.1273 without restraints) Performing minimization step: 4970. Total energy = 1962.1281 kcal/mol (1958.7426 without restraints) Performing minimization step: 4971. Total energy = 1961.7426 kcal/mol (1958.3577 without restraints) Performing minimization step: 4972. Total energy = 1961.3572 kcal/mol (1957.9731 without restraints) Performing minimization step: 4973. Total energy = 1960.9720 kcal/mol (1957.5886 without restraints) Performing minimization step: 4974. Total energy = 1960.5873 kcal/mol (1957.2045 without restraints) Performing minimization step: 4975. Total energy = 1960.2029 kcal/mol (1956.8207 without restraints) Performing minimization step: 4976. Total energy = 1959.8189 kcal/mol (1956.4375 without restraints) Performing minimization step: 4977. Total energy = 1959.4346 kcal/mol (1956.0539 without restraints) Performing minimization step: 4978. Total energy = 1959.0502 kcal/mol (1955.6702 without restraints) Performing minimization step: 4979. Total energy = 1958.6664 kcal/mol (1955.2870 without restraints) Performing minimization step: 4980. Total energy = 1958.2832 kcal/mol (1954.9047 without restraints) Performing minimization step: 4981. Total energy = 1957.9003 kcal/mol (1954.5225 without restraints) Performing minimization step: 4982. Total energy = 1957.5172 kcal/mol (1954.1398 without restraints) Performing minimization step: 4983. Total energy = 1957.1345 kcal/mol (1953.7578 without restraints) Performing minimization step: 4984. Total energy = 1956.7518 kcal/mol (1953.3758 without restraints) Performing minimization step: 4985. Total energy = 1956.3695 kcal/mol (1952.9942 without restraints) Performing minimization step: 4986. Total energy = 1955.9870 kcal/mol (1952.6124 without restraints) Performing minimization step: 4987. Total energy = 1955.6047 kcal/mol (1952.2308 without restraints) Performing minimization step: 4988. Total energy = 1955.2227 kcal/mol (1951.8494 without restraints) Performing minimization step: 4989. Total energy = 1954.8406 kcal/mol (1951.4680 without restraints) Performing minimization step: 4990. Total energy = 1954.4591 kcal/mol (1951.0873 without restraints) Performing minimization step: 4991. Total energy = 1954.0780 kcal/mol (1950.7068 without restraints) Performing minimization step: 4992. Total energy = 1953.6969 kcal/mol (1950.3264 without restraints) Performing minimization step: 4993. Total energy = 1953.3159 kcal/mol (1949.9460 without restraints) Performing minimization step: 4994. Total energy = 1952.9353 kcal/mol (1949.5661 without restraints) Performing minimization step: 4995. Total energy = 1952.5546 kcal/mol (1949.1861 without restraints) Performing minimization step: 4996. Total energy = 1952.1743 kcal/mol (1948.8065 without restraints) Performing minimization step: 4997. Total energy = 1951.7942 kcal/mol (1948.4272 without restraints) Performing minimization step: 4998. Total energy = 1951.4144 kcal/mol (1948.0479 without restraints) Performing minimization step: 4999. Total energy = 1951.0347 kcal/mol (1947.6689 without restraints) Performing minimization step: 5000. Total energy = 1950.6557 kcal/mol (1947.2906 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/da7a3228/tmp/ENST00000618027_refx/ENST00000618027_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to ENST00000618027_refx.pdb DONE!