============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i.pdb ============================================================================= Missing atom added: HETATM 1 P DC A 1 -21.220 -13.106 34.482 1.00 0.00 P Missing atom added: HETATM 21 H5'1 DC A 1 -19.019 -14.887 34.605 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 1 -18.293 -13.218 34.252 1.00 0.00 H Missing atom added: HETATM 23 H4' DC A 1 -17.089 -14.924 33.250 1.00 0.00 H Missing atom added: HETATM 24 H3' DC A 1 -16.053 -14.236 33.683 1.00 0.00 H Missing atom added: HETATM 27 H1' DC A 1 -16.217 -13.206 30.729 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 1 -15.814 -13.368 31.381 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 1 -14.859 -13.602 33.122 1.00 0.00 H Missing atom added: HETATM 30 H6 DC A 1 -17.215 -11.469 33.674 1.00 0.00 H Missing atom added: HETATM 28 H41 DC A 1 -18.382 -7.178 32.057 1.00 0.00 H Missing atom added: HETATM 29 H42 DC A 1 -18.399 -7.432 30.364 1.00 0.00 H Missing atom added: HETATM 31 H5 DC A 1 -17.806 -8.837 33.998 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DC A 2 -15.337 -15.478 29.853 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 2 -14.266 -16.937 29.454 1.00 0.00 H Missing atom added: HETATM 23 H4' DC A 2 -14.080 -15.026 28.018 1.00 0.00 H Missing atom added: HETATM 24 H3' DC A 2 -11.877 -14.931 30.289 1.00 0.00 H Missing atom added: HETATM 27 H1' DC A 2 -13.050 -11.897 28.739 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 2 -12.255 -12.380 29.439 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 2 -11.082 -13.496 30.612 1.00 0.00 H Missing atom added: HETATM 30 H6 DC A 2 -12.915 -12.166 31.941 1.00 0.00 H Missing atom added: HETATM 28 H41 DC A 2 -14.559 -7.817 32.737 1.00 0.00 H Missing atom added: HETATM 29 H42 DC A 2 -14.925 -7.271 31.157 1.00 0.00 H Missing atom added: HETATM 31 H5 DC A 2 -13.585 -10.097 33.543 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA A 3 -11.672 -13.903 25.571 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 3 -12.122 -15.543 24.832 1.00 0.00 H Missing atom added: HETATM 25 H4' DA A 3 -11.632 -13.157 23.892 1.00 0.00 H Missing atom added: HETATM 26 H3' DA A 3 -8.758 -13.882 25.142 1.00 0.00 H Missing atom added: HETATM 29 H1' DA A 3 -10.190 -10.612 25.419 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 3 -9.223 -11.231 25.444 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 3 -7.814 -12.625 25.708 1.00 0.00 H Missing atom added: HETATM 30 H8 DA A 3 -9.246 -12.372 28.292 1.00 0.00 H Missing atom added: HETATM 31 H61 DA A 3 -10.636 -8.538 30.983 1.00 0.00 H Missing atom added: HETATM 32 H62 DA A 3 -11.448 -7.087 30.595 1.00 0.00 H Missing atom added: HETATM 33 H2 DA A 3 -12.467 -6.866 25.955 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA A 4 -9.999 -10.782 21.806 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 4 -10.388 -11.643 20.211 1.00 0.00 H Missing atom added: HETATM 25 H4' DA A 4 -10.429 -9.168 20.857 1.00 0.00 H Missing atom added: HETATM 26 H3' DA A 4 -7.324 -9.639 20.578 1.00 0.00 H Missing atom added: HETATM 29 H1' DA A 4 -8.823 -7.437 23.175 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 4 -7.865 -7.571 22.452 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 4 -6.339 -8.450 21.506 1.00 0.00 H Missing atom added: HETATM 30 H8 DA A 4 -6.965 -10.271 24.154 1.00 0.00 H Missing atom added: HETATM 31 H61 DA A 4 -6.904 -8.552 28.732 1.00 0.00 H Missing atom added: HETATM 32 H62 DA A 4 -7.648 -7.204 29.471 1.00 0.00 H Missing atom added: HETATM 33 H2 DA A 4 -10.023 -4.589 26.288 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT A 5 -9.356 -5.571 20.911 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 5 -8.880 -4.485 19.588 1.00 0.00 H Missing atom added: HETATM 23 H4' DT A 5 -8.970 -3.015 21.304 1.00 0.00 H Missing atom added: HETATM 24 H3' DT A 5 -6.694 -3.257 19.797 1.00 0.00 H Missing atom added: HETATM 27 H1' DT A 5 -6.826 -2.875 23.866 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 5 -5.373 -4.505 21.548 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 5 -5.001 -2.837 21.965 1.00 0.00 H Missing atom added: HETATM 32 H6 DT A 5 -5.366 -5.995 22.896 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 5 -5.859 -4.697 27.451 1.00 0.00 H Missing atom added: HETATM 30 H72 DT A 5 -4.856 -8.656 24.897 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 5 -3.296 -7.803 24.994 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 5 -4.173 -7.883 23.449 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA A 6 -7.692 -0.354 22.723 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 6 -8.072 1.127 21.675 1.00 0.00 H Missing atom added: HETATM 25 H4' DA A 6 -8.210 1.152 24.152 1.00 0.00 H Missing atom added: HETATM 26 H3' DA A 6 -5.428 2.241 23.365 1.00 0.00 H Missing atom added: HETATM 29 H1' DA A 6 -5.496 0.323 26.289 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 6 -4.978 1.006 25.688 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 6 -4.145 2.255 24.367 1.00 0.00 H Missing atom added: HETATM 30 H8 DA A 6 -4.440 -1.393 23.309 1.00 0.00 H Missing atom added: HETATM 31 H61 DA A 6 -1.812 -4.534 26.004 1.00 0.00 H Missing atom added: HETATM 32 H62 DA A 6 -1.626 -4.717 27.692 1.00 0.00 H Missing atom added: HETATM 33 H2 DA A 6 -3.844 -1.248 30.063 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA A 7 -6.336 2.969 27.680 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 7 -6.302 4.754 28.178 1.00 0.00 H Missing atom added: HETATM 25 H4' DA A 7 -5.181 3.481 29.697 1.00 0.00 H Missing atom added: HETATM 26 H3' DA A 7 -3.346 5.196 27.873 1.00 0.00 H Missing atom added: HETATM 29 H1' DA A 7 -2.202 1.937 29.385 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 7 -1.806 3.194 29.247 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 7 -1.571 4.803 28.083 1.00 0.00 H Missing atom added: HETATM 30 H8 DA A 7 -2.248 2.148 25.967 1.00 0.00 H Missing atom added: HETATM 31 H61 DA A 7 0.428 -1.963 25.956 1.00 0.00 H Missing atom added: HETATM 32 H62 DA A 7 0.930 -3.007 27.211 1.00 0.00 H Missing atom added: HETATM 33 H2 DA A 7 -0.448 -1.392 31.463 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT A 8 -2.343 3.746 31.922 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 8 -2.377 5.031 33.149 1.00 0.00 H Missing atom added: HETATM 23 H4' DT A 8 -0.763 3.198 33.651 1.00 0.00 H Missing atom added: HETATM 24 H3' DT A 8 0.431 5.626 33.235 1.00 0.00 H Missing atom added: HETATM 27 H1' DT A 8 1.446 1.684 32.057 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 8 1.585 4.555 30.947 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 8 2.720 4.226 32.251 1.00 0.00 H Missing atom added: HETATM 32 H6 DT A 8 0.720 3.681 29.255 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 8 3.152 -0.414 29.091 1.00 0.00 H Missing atom added: HETATM 30 H72 DT A 8 0.537 2.379 26.163 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 8 2.160 3.110 26.135 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 8 0.822 3.944 26.957 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DC A 9 2.267 2.476 35.080 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 9 3.297 3.096 36.492 1.00 0.00 H Missing atom added: HETATM 23 H4' DC A 9 3.975 1.001 35.851 1.00 0.00 H Missing atom added: HETATM 24 H3' DC A 9 5.893 3.302 35.306 1.00 0.00 H Missing atom added: HETATM 27 H1' DC A 9 5.963 0.617 32.932 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 9 6.555 1.487 33.430 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 9 7.182 3.183 34.284 1.00 0.00 H Missing atom added: HETATM 30 H6 DC A 9 4.670 3.569 32.156 1.00 0.00 H Missing atom added: HETATM 28 H41 DC A 9 5.113 3.063 27.479 1.00 0.00 H Missing atom added: HETATM 29 H42 DC A 9 5.813 1.507 27.345 1.00 0.00 H Missing atom added: HETATM 31 H5 DC A 9 4.429 4.420 29.597 1.00 0.00 H Missing atom added: HETATM 24 H5'1 DG A 10 7.539 -1.216 35.720 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 10 8.985 -1.265 36.877 1.00 0.00 H Missing atom added: HETATM 26 H4' DG A 10 9.585 -2.546 35.181 1.00 0.00 H Missing atom added: HETATM 27 H3' DG A 10 11.088 0.023 35.806 1.00 0.00 H Missing atom added: HETATM 30 H1' DG A 10 11.036 -0.657 32.374 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 10 11.588 -0.268 33.212 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 10 12.163 0.747 34.836 1.00 0.00 H Missing atom added: HETATM 31 H8 DG A 10 9.411 2.298 33.663 1.00 0.00 H Missing atom added: HETATM 34 H1 DG A 10 9.563 0.852 26.947 1.00 0.00 H Missing atom added: HETATM 32 H21 DG A 10 11.224 -1.957 28.566 1.00 0.00 H Missing atom added: HETATM 33 H22 DG A 10 11.045 -0.981 27.218 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DC A 11 12.426 -3.306 33.440 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 11 13.986 -4.206 33.877 1.00 0.00 H Missing atom added: HETATM 23 H4' DC A 11 13.896 -4.187 31.655 1.00 0.00 H Missing atom added: HETATM 24 H3' DC A 11 15.914 -2.194 33.038 1.00 0.00 H Missing atom added: HETATM 27 H1' DC A 11 14.643 -1.377 29.740 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 11 15.690 -1.450 30.365 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 11 16.755 -1.068 32.012 1.00 0.00 H Missing atom added: HETATM 30 H6 DC A 11 13.867 0.234 32.650 1.00 0.00 H Missing atom added: HETATM 28 H41 DC A 11 12.057 4.116 30.668 1.00 0.00 H Missing atom added: HETATM 29 H42 DC A 11 12.170 3.754 28.999 1.00 0.00 H Missing atom added: HETATM 31 H5 DC A 11 12.788 2.711 32.744 1.00 0.00 H Missing atom added: HETATM 24 H5'1 DG A 12 16.888 -4.140 29.224 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 12 17.683 -5.790 29.503 1.00 0.00 H Missing atom added: HETATM 26 H4' DG A 12 17.502 -4.487 27.307 1.00 0.00 H Missing atom added: HETATM 27 H3' DG A 12 20.127 -3.482 28.684 1.00 0.00 H Missing atom added: HETATM 30 H1' DG A 12 18.174 -1.032 27.018 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 12 19.173 -1.354 27.313 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 12 20.777 -1.998 28.318 1.00 0.00 H Missing atom added: HETATM 31 H8 DG A 12 18.511 -1.038 30.623 1.00 0.00 H Missing atom added: HETATM 34 H1 DG A 12 15.449 4.135 27.325 1.00 0.00 H Missing atom added: HETATM 32 H21 DG A 12 16.349 1.758 24.715 1.00 0.00 H Missing atom added: HETATM 33 H22 DG A 12 16.065 3.341 25.175 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA A 13 19.096 -2.900 24.356 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 13 19.829 -4.122 23.171 1.00 0.00 H Missing atom added: HETATM 25 H4' DA A 13 19.010 -2.013 22.298 1.00 0.00 H Missing atom added: HETATM 26 H3' DA A 13 22.098 -1.804 22.917 1.00 0.00 H Missing atom added: HETATM 29 H1' DA A 13 20.357 1.116 23.410 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 13 21.226 0.643 23.257 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 13 22.892 -0.455 23.131 1.00 0.00 H Missing atom added: HETATM 30 H8 DA A 13 21.644 -0.800 26.237 1.00 0.00 H Missing atom added: HETATM 31 H61 DA A 13 20.533 2.861 29.319 1.00 0.00 H Missing atom added: HETATM 32 H62 DA A 13 19.620 4.290 29.115 1.00 0.00 H Missing atom added: HETATM 33 H2 DA A 13 18.202 4.821 24.619 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT A 14 20.440 1.169 20.740 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 14 20.905 1.236 19.027 1.00 0.00 H Missing atom added: HETATM 23 H4' DT A 14 20.409 3.431 19.897 1.00 0.00 H Missing atom added: HETATM 24 H3' DT A 14 22.962 3.161 19.038 1.00 0.00 H Missing atom added: HETATM 27 H1' DT A 14 21.576 5.144 22.350 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 14 23.919 3.148 21.491 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 14 23.894 4.858 21.081 1.00 0.00 H Missing atom added: HETATM 32 H6 DT A 14 23.379 2.224 23.340 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 14 22.151 5.658 26.392 1.00 0.00 H Missing atom added: HETATM 30 H72 DT A 14 23.429 1.018 26.490 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 14 24.976 1.891 26.379 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 14 24.374 0.966 24.985 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT A 15 21.233 7.375 19.691 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 15 21.416 7.878 17.997 1.00 0.00 H Missing atom added: HETATM 23 H4' DT A 15 21.321 9.545 20.030 1.00 0.00 H Missing atom added: HETATM 24 H3' DT A 15 23.294 10.075 18.798 1.00 0.00 H Missing atom added: HETATM 27 H1' DT A 15 22.851 9.280 22.907 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 15 24.962 8.870 20.559 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 15 24.758 10.494 21.203 1.00 0.00 H Missing atom added: HETATM 32 H6 DT A 15 24.848 6.820 21.640 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 15 24.388 7.919 26.256 1.00 0.00 H Missing atom added: HETATM 30 H72 DT A 15 25.560 4.114 23.529 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 15 27.068 5.056 23.615 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 15 26.152 4.978 22.092 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA A 16 21.697 12.608 22.024 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 16 22.047 14.363 21.542 1.00 0.00 H Missing atom added: HETATM 25 H4' DA A 16 21.886 14.225 23.796 1.00 0.00 H Missing atom added: HETATM 26 H3' DA A 16 24.591 14.880 22.556 1.00 0.00 H Missing atom added: HETATM 29 H1' DA A 16 24.673 13.150 25.707 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 16 25.209 13.877 25.025 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 16 26.010 14.852 23.474 1.00 0.00 H Missing atom added: HETATM 30 H8 DA A 16 25.668 11.430 22.744 1.00 0.00 H Missing atom added: HETATM 31 H61 DA A 16 28.304 8.314 25.441 1.00 0.00 H Missing atom added: HETATM 32 H62 DA A 16 28.518 8.146 27.127 1.00 0.00 H Missing atom added: HETATM 33 H2 DA A 16 26.295 11.612 29.501 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT A 17 23.795 15.743 26.946 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 17 23.625 17.486 27.243 1.00 0.00 H Missing atom added: HETATM 23 H4' DT A 17 24.740 16.367 29.108 1.00 0.00 H Missing atom added: HETATM 24 H3' DT A 17 26.002 18.384 28.209 1.00 0.00 H Missing atom added: HETATM 27 H1' DT A 17 27.485 14.641 29.213 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 17 27.867 16.919 26.998 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 17 28.496 17.117 28.629 1.00 0.00 H Missing atom added: HETATM 32 H6 DT A 17 27.705 15.045 25.754 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 17 30.031 11.697 28.225 1.00 0.00 H Missing atom added: HETATM 30 H72 DT A 17 28.395 12.433 23.760 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 17 29.956 13.288 23.767 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 17 28.436 14.211 23.727 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT A 18 28.756 16.674 31.443 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 18 27.059 16.315 31.827 1.00 0.00 H Missing atom added: HETATM 23 H4' DT A 18 29.418 15.619 32.848 1.00 0.00 H Missing atom added: HETATM 24 H3' DT A 18 29.786 18.779 32.657 1.00 0.00 H Missing atom added: HETATM 27 H1' DT A 18 32.029 15.624 31.666 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 18 30.500 18.182 30.373 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 18 32.041 18.103 31.218 1.00 0.00 H Missing atom added: HETATM 32 H6 DT A 18 30.834 17.092 28.652 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 18 32.988 12.845 28.803 1.00 0.00 H Missing atom added: HETATM 30 H72 DT A 18 30.674 15.621 25.615 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 18 32.336 16.258 25.630 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 18 31.012 17.207 26.344 1.00 0.00 H Missing atom added: HETATM 24 H5'1 DG A 19 32.766 16.229 34.997 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 19 31.978 16.436 36.661 1.00 0.00 H Missing atom added: HETATM 26 H4' DG A 19 34.217 15.362 35.892 1.00 0.00 H Missing atom added: HETATM 27 H3' DG A 19 34.901 18.449 35.737 1.00 0.00 H Missing atom added: HETATM 30 H1' DG A 19 36.133 16.288 33.245 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 19 36.148 17.312 33.670 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 19 35.998 19.031 34.679 1.00 0.00 H Missing atom added: HETATM 31 H8 DG A 19 34.291 19.004 32.138 1.00 0.00 H Missing atom added: HETATM 34 H1 DG A 19 36.343 13.824 28.118 1.00 0.00 H Missing atom added: HETATM 32 H21 DG A 19 37.320 12.847 31.476 1.00 0.00 H Missing atom added: HETATM 33 H22 DG A 19 37.567 12.768 29.824 1.00 0.00 H Missing atom added: HETATM 24 H5'1 DG A 20 37.710 14.646 36.842 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 20 38.310 14.942 38.570 1.00 0.00 H Missing atom added: HETATM 26 H4' DG A 20 39.304 13.247 36.991 1.00 0.00 H Missing atom added: HETATM 27 H3' DG A 20 41.068 15.718 37.015 1.00 0.00 H Missing atom added: HETATM 30 H1' DG A 20 40.676 14.702 33.854 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 20 41.128 15.300 34.537 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 20 41.991 16.333 36.016 1.00 0.00 H Missing atom added: HETATM 31 H8 DG A 20 39.043 17.778 34.756 1.00 0.00 H Missing atom added: HETATM 34 H1 DG A 20 39.057 15.372 28.334 1.00 0.00 H Missing atom added: HETATM 32 H21 DG A 20 40.828 12.857 30.285 1.00 0.00 H Missing atom added: HETATM 33 H22 DG A 20 40.590 13.626 28.818 1.00 0.00 H Number of atoms: 634 Number of residues: 20 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. A 1 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. A 1 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. A 1 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. A 1 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. A 1 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 683 Number of angles built: 1241 Number of dihedrals built: 1855 Number of impropers built: 134 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- Missing atom added: HETATM 1 P DC B 21 42.156 14.830 18.647 1.00 0.00 P Missing atom added: HETATM 21 H5'1 DC B 21 40.908 14.737 21.190 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC B 21 42.658 15.258 21.510 1.00 0.00 H Missing atom added: HETATM 23 H4' DC B 21 41.822 13.911 23.221 1.00 0.00 H Missing atom added: HETATM 24 H3' DC B 21 40.145 12.493 21.781 1.00 0.00 H Missing atom added: HETATM 27 H1' DC B 21 40.802 12.827 25.097 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC B 21 40.286 12.392 24.401 1.00 0.00 H Missing atom added: HETATM 25 H2' DC B 21 39.114 11.922 22.851 1.00 0.00 H Missing atom added: HETATM 30 H6 DC B 21 39.410 15.331 23.052 1.00 0.00 H Missing atom added: HETATM 28 H41 DC B 21 37.594 18.202 26.351 1.00 0.00 H Missing atom added: HETATM 29 H42 DC B 21 38.102 17.446 27.801 1.00 0.00 H Missing atom added: HETATM 31 H5 DC B 21 37.965 17.485 23.866 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DC B 22 41.732 10.250 24.950 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC B 22 42.042 8.430 24.780 1.00 0.00 H Missing atom added: HETATM 23 H4' DC B 22 40.998 8.798 26.754 1.00 0.00 H Missing atom added: HETATM 24 H3' DC B 22 38.966 7.999 24.404 1.00 0.00 H Missing atom added: HETATM 27 H1' DC B 22 37.743 9.784 27.185 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC B 22 37.510 9.116 26.343 1.00 0.00 H Missing atom added: HETATM 25 H2' DC B 22 37.351 8.154 24.598 1.00 0.00 H Missing atom added: HETATM 30 H6 DC B 22 37.401 10.722 24.011 1.00 0.00 H Missing atom added: HETATM 28 H41 DC B 22 35.350 14.901 24.813 1.00 0.00 H Missing atom added: HETATM 29 H42 DC B 22 35.452 15.034 26.516 1.00 0.00 H Missing atom added: HETATM 31 H5 DC B 22 36.157 12.993 23.227 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA B 23 39.240 6.079 28.647 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA B 23 40.241 4.552 28.328 1.00 0.00 H Missing atom added: HETATM 25 H4' DA B 23 39.177 5.675 30.445 1.00 0.00 H Missing atom added: HETATM 26 H3' DA B 23 36.830 4.104 29.292 1.00 0.00 H Missing atom added: HETATM 29 H1' DA B 23 36.091 7.477 30.254 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA B 23 35.707 6.424 30.238 1.00 0.00 H Missing atom added: HETATM 27 H2' DA B 23 35.224 4.599 29.581 1.00 0.00 H Missing atom added: HETATM 30 H8 DA B 23 36.043 6.346 26.810 1.00 0.00 H Missing atom added: HETATM 31 H61 DA B 23 33.513 10.330 25.477 1.00 0.00 H Missing atom added: HETATM 32 H62 DA B 23 33.032 11.725 26.335 1.00 0.00 H Missing atom added: HETATM 33 H2 DA B 23 34.210 11.429 30.922 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA B 24 36.455 6.189 33.166 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA B 24 36.096 5.106 34.627 1.00 0.00 H Missing atom added: HETATM 25 H4' DA B 24 35.179 7.215 34.872 1.00 0.00 H Missing atom added: HETATM 26 H3' DA B 24 33.158 4.956 34.225 1.00 0.00 H Missing atom added: HETATM 29 H1' DA B 24 32.327 8.220 33.003 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA B 24 31.914 7.259 33.462 1.00 0.00 H Missing atom added: HETATM 27 H2' DA B 24 31.576 5.313 33.773 1.00 0.00 H Missing atom added: HETATM 30 H8 DA B 24 33.075 5.529 30.724 1.00 0.00 H Missing atom added: HETATM 31 H61 DA B 24 31.043 8.110 27.071 1.00 0.00 H Missing atom added: HETATM 32 H62 DA B 24 30.416 9.697 26.997 1.00 0.00 H Missing atom added: HETATM 33 H2 DA B 24 30.662 11.861 31.219 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT B 25 31.590 8.699 35.871 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT B 25 31.061 8.583 37.563 1.00 0.00 H Missing atom added: HETATM 23 H4' DT B 25 29.652 10.014 36.013 1.00 0.00 H Missing atom added: HETATM 24 H3' DT B 25 28.263 8.278 37.182 1.00 0.00 H Missing atom added: HETATM 27 H1' DT B 25 28.467 9.630 33.167 1.00 0.00 H Missing atom added: HETATM 25 H2' DT B 25 27.866 6.973 34.722 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT B 25 26.592 8.179 34.853 1.00 0.00 H Missing atom added: HETATM 32 H6 DT B 25 29.312 6.350 33.013 1.00 0.00 H Missing atom added: HETATM 28 H3 DT B 25 27.664 8.989 29.404 1.00 0.00 H Missing atom added: HETATM 30 H72 DT B 25 30.454 5.121 30.101 1.00 0.00 H Missing atom added: HETATM 29 H71 DT B 25 28.798 4.469 30.132 1.00 0.00 H Missing atom added: HETATM 31 H73 DT B 25 29.752 4.551 31.631 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA B 26 26.733 11.937 35.375 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA B 26 25.180 12.372 36.288 1.00 0.00 H Missing atom added: HETATM 25 H4' DA B 26 24.996 13.231 34.247 1.00 0.00 H Missing atom added: HETATM 26 H3' DA B 26 23.020 11.176 35.161 1.00 0.00 H Missing atom added: HETATM 29 H1' DA B 26 23.825 11.077 31.625 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA B 26 22.980 10.944 32.435 1.00 0.00 H Missing atom added: HETATM 27 H2' DA B 26 21.974 10.404 34.076 1.00 0.00 H Missing atom added: HETATM 30 H8 DA B 26 24.940 8.393 33.565 1.00 0.00 H Missing atom added: HETATM 31 H61 DA B 26 25.131 5.646 29.517 1.00 0.00 H Missing atom added: HETATM 32 H62 DA B 26 24.843 5.999 27.871 1.00 0.00 H Missing atom added: HETATM 33 H2 DA B 26 23.324 10.462 27.301 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA B 27 22.367 13.681 31.723 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA B 27 20.818 14.695 31.637 1.00 0.00 H Missing atom added: HETATM 25 H4' DA B 27 21.143 14.224 29.622 1.00 0.00 H Missing atom added: HETATM 26 H3' DA B 27 18.685 13.002 31.142 1.00 0.00 H Missing atom added: HETATM 29 H1' DA B 27 19.810 11.126 28.468 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA B 27 19.021 11.389 29.071 1.00 0.00 H Missing atom added: HETATM 27 H2' DA B 27 17.754 11.829 30.553 1.00 0.00 H Missing atom added: HETATM 30 H8 DA B 27 20.482 10.004 31.904 1.00 0.00 H Missing atom added: HETATM 31 H61 DA B 27 21.715 5.577 30.196 1.00 0.00 H Missing atom added: HETATM 32 H62 DA B 27 21.960 4.988 28.612 1.00 0.00 H Missing atom added: HETATM 33 H2 DA B 27 21.046 8.325 25.355 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT B 28 18.348 13.173 26.962 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT B 28 17.247 14.446 26.393 1.00 0.00 H Missing atom added: HETATM 23 H4' DT B 28 17.459 12.311 25.005 1.00 0.00 H Missing atom added: HETATM 24 H3' DT B 28 15.018 12.635 25.743 1.00 0.00 H Missing atom added: HETATM 27 H1' DT B 28 17.766 9.319 25.621 1.00 0.00 H Missing atom added: HETATM 25 H2' DT B 28 15.356 10.204 27.252 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT B 28 14.813 9.769 25.636 1.00 0.00 H Missing atom added: HETATM 32 H6 DT B 28 16.961 9.749 28.868 1.00 0.00 H Missing atom added: HETATM 28 H3 DT B 28 18.690 5.742 26.945 1.00 0.00 H Missing atom added: HETATM 30 H72 DT B 28 18.633 7.974 31.222 1.00 0.00 H Missing atom added: HETATM 29 H71 DT B 28 17.054 7.155 31.137 1.00 0.00 H Missing atom added: HETATM 31 H73 DT B 28 17.146 8.926 31.010 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DC B 29 15.735 9.943 23.244 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC B 29 14.859 10.304 21.651 1.00 0.00 H Missing atom added: HETATM 23 H4' DC B 29 15.204 8.136 21.662 1.00 0.00 H Missing atom added: HETATM 24 H3' DC B 29 12.277 8.906 22.759 1.00 0.00 H Missing atom added: HETATM 27 H1' DC B 29 13.511 5.949 23.727 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC B 29 12.753 6.584 23.704 1.00 0.00 H Missing atom added: HETATM 25 H2' DC B 29 11.331 7.977 23.526 1.00 0.00 H Missing atom added: HETATM 30 H6 DC B 29 13.030 8.600 25.834 1.00 0.00 H Missing atom added: HETATM 28 H41 DC B 29 14.316 6.488 29.871 1.00 0.00 H Missing atom added: HETATM 29 H42 DC B 29 14.923 4.988 29.311 1.00 0.00 H Missing atom added: HETATM 31 H5 DC B 29 13.330 8.507 28.523 1.00 0.00 H Missing atom added: HETATM 24 H5'1 DG B 30 13.365 5.369 19.964 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG B 30 12.537 5.471 18.311 1.00 0.00 H Missing atom added: HETATM 26 H4' DG B 30 13.346 3.318 19.028 1.00 0.00 H Missing atom added: HETATM 27 H3' DG B 30 10.291 3.497 19.442 1.00 0.00 H Missing atom added: HETATM 30 H1' DG B 30 11.856 1.796 21.975 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG B 30 11.044 1.828 21.360 1.00 0.00 H Missing atom added: HETATM 28 H2' DG B 30 9.430 2.514 20.400 1.00 0.00 H Missing atom added: HETATM 31 H8 DG B 30 10.457 5.222 22.304 1.00 0.00 H Missing atom added: HETATM 34 H1 DG B 30 12.765 1.890 27.820 1.00 0.00 H Missing atom added: HETATM 32 H21 DG B 30 13.407 -0.363 25.042 1.00 0.00 H Missing atom added: HETATM 33 H22 DG B 30 13.115 -0.140 26.674 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DC B 31 12.252 -0.021 20.263 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC B 31 12.189 -1.504 19.152 1.00 0.00 H Missing atom added: HETATM 23 H4' DC B 31 12.315 -2.263 21.263 1.00 0.00 H Missing atom added: HETATM 24 H3' DC B 31 9.304 -2.024 20.140 1.00 0.00 H Missing atom added: HETATM 27 H1' DC B 31 9.700 -2.107 23.546 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC B 31 9.069 -2.082 22.724 1.00 0.00 H Missing atom added: HETATM 25 H2' DC B 31 8.019 -2.102 21.024 1.00 0.00 H Missing atom added: HETATM 30 H6 DC B 31 8.404 0.467 21.791 1.00 0.00 H Missing atom added: HETATM 28 H41 DC B 31 7.739 3.499 25.336 1.00 0.00 H Missing atom added: HETATM 29 H42 DC B 31 8.585 2.749 26.622 1.00 0.00 H Missing atom added: HETATM 31 H5 DC B 31 7.387 2.721 22.879 1.00 0.00 H Missing atom added: HETATM 24 H5'1 DG B 32 11.007 -5.359 22.863 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG B 32 11.028 -6.979 21.964 1.00 0.00 H Missing atom added: HETATM 26 H4' DG B 32 11.057 -6.739 24.499 1.00 0.00 H Missing atom added: HETATM 27 H3' DG B 32 8.164 -7.265 23.543 1.00 0.00 H Missing atom added: HETATM 30 H1' DG B 32 8.551 -4.973 26.285 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG B 32 7.885 -5.795 25.820 1.00 0.00 H Missing atom added: HETATM 28 H2' DG B 32 6.840 -6.892 24.516 1.00 0.00 H Missing atom added: HETATM 31 H8 DG B 32 7.236 -3.977 23.116 1.00 0.00 H Missing atom added: HETATM 34 H1 DG B 32 6.603 -0.081 28.721 1.00 0.00 H Missing atom added: HETATM 32 H21 DG B 32 8.306 -3.081 29.875 1.00 0.00 H Missing atom added: HETATM 33 H22 DG B 32 7.285 -1.795 30.199 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA B 33 9.528 -7.845 27.765 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA B 33 9.417 -9.577 28.415 1.00 0.00 H Missing atom added: HETATM 25 H4' DA B 33 9.244 -7.889 30.066 1.00 0.00 H Missing atom added: HETATM 26 H3' DA B 33 6.577 -9.266 29.373 1.00 0.00 H Missing atom added: HETATM 29 H1' DA B 33 6.335 -5.819 30.236 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA B 33 5.826 -6.836 30.226 1.00 0.00 H Missing atom added: HETATM 27 H2' DA B 33 5.111 -8.646 29.770 1.00 0.00 H Missing atom added: HETATM 30 H8 DA B 33 5.818 -6.981 26.928 1.00 0.00 H Missing atom added: HETATM 31 H61 DA B 33 3.197 -2.992 25.859 1.00 0.00 H Missing atom added: HETATM 32 H62 DA B 33 2.798 -1.595 26.758 1.00 0.00 H Missing atom added: HETATM 33 H2 DA B 33 4.528 -1.845 31.182 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT B 34 6.456 -6.875 32.878 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT B 34 6.376 -7.787 34.400 1.00 0.00 H Missing atom added: HETATM 23 H4' DT B 34 5.167 -5.771 34.673 1.00 0.00 H Missing atom added: HETATM 24 H3' DT B 34 3.741 -7.981 35.139 1.00 0.00 H Missing atom added: HETATM 27 H1' DT B 34 2.578 -4.627 33.057 1.00 0.00 H Missing atom added: HETATM 25 H2' DT B 34 2.400 -7.817 32.922 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT B 34 1.431 -6.848 34.025 1.00 0.00 H Missing atom added: HETATM 32 H6 DT B 34 3.084 -7.343 30.813 1.00 0.00 H Missing atom added: HETATM 28 H3 DT B 34 0.780 -3.351 29.618 1.00 0.00 H Missing atom added: HETATM 30 H72 DT B 34 3.125 -6.965 27.467 1.00 0.00 H Missing atom added: HETATM 29 H71 DT B 34 1.506 -7.645 27.760 1.00 0.00 H Missing atom added: HETATM 31 H73 DT B 34 2.899 -8.224 28.703 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT B 35 2.028 -3.834 35.698 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT B 35 1.667 -3.851 37.437 1.00 0.00 H Missing atom added: HETATM 23 H4' DT B 35 0.233 -2.283 36.189 1.00 0.00 H Missing atom added: HETATM 24 H3' DT B 35 -1.140 -4.104 37.506 1.00 0.00 H Missing atom added: HETATM 27 H1' DT B 35 -1.694 -2.726 33.627 1.00 0.00 H Missing atom added: HETATM 25 H2' DT B 35 -1.738 -5.470 35.334 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT B 35 -3.042 -4.294 35.426 1.00 0.00 H Missing atom added: HETATM 32 H6 DT B 35 -0.514 -5.995 33.502 1.00 0.00 H Missing atom added: HETATM 28 H3 DT B 35 -2.812 -3.950 29.865 1.00 0.00 H Missing atom added: HETATM 30 H72 DT B 35 0.268 -7.574 30.651 1.00 0.00 H Missing atom added: HETATM 29 H71 DT B 35 -1.330 -8.271 31.013 1.00 0.00 H Missing atom added: HETATM 31 H73 DT B 35 -0.180 -7.946 32.331 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA B 36 -3.064 -0.219 36.072 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA B 36 -4.525 0.045 37.182 1.00 0.00 H Missing atom added: HETATM 25 H4' DA B 36 -4.854 1.116 35.213 1.00 0.00 H Missing atom added: HETATM 26 H3' DA B 36 -6.804 -0.854 36.081 1.00 0.00 H Missing atom added: HETATM 29 H1' DA B 36 -6.329 -1.057 32.614 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA B 36 -6.951 -1.237 33.471 1.00 0.00 H Missing atom added: HETATM 27 H2' DA B 36 -7.898 -1.604 35.193 1.00 0.00 H Missing atom added: HETATM 30 H8 DA B 36 -5.035 -3.743 34.638 1.00 0.00 H Missing atom added: HETATM 31 H61 DA B 36 -5.167 -6.741 30.805 1.00 0.00 H Missing atom added: HETATM 32 H62 DA B 36 -5.631 -6.523 29.176 1.00 0.00 H Missing atom added: HETATM 33 H2 DA B 36 -6.929 -2.010 28.347 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT B 37 -7.834 1.696 32.273 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT B 37 -9.215 2.743 32.659 1.00 0.00 H Missing atom added: HETATM 23 H4' DT B 37 -9.539 1.957 30.451 1.00 0.00 H Missing atom added: HETATM 24 H3' DT B 37 -11.498 1.735 32.107 1.00 0.00 H Missing atom added: HETATM 27 H1' DT B 37 -10.183 -1.214 29.567 1.00 0.00 H Missing atom added: HETATM 25 H2' DT B 37 -11.205 -0.781 32.559 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT B 37 -12.259 -0.789 31.150 1.00 0.00 H Missing atom added: HETATM 32 H6 DT B 37 -9.464 -2.203 32.941 1.00 0.00 H Missing atom added: HETATM 28 H3 DT B 37 -9.099 -5.100 29.170 1.00 0.00 H Missing atom added: HETATM 30 H72 DT B 37 -7.475 -4.825 33.719 1.00 0.00 H Missing atom added: HETATM 29 H71 DT B 37 -9.106 -5.520 33.877 1.00 0.00 H Missing atom added: HETATM 31 H73 DT B 37 -8.792 -3.853 34.412 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT B 38 -13.064 0.521 27.879 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT B 38 -12.235 2.089 27.774 1.00 0.00 H Missing atom added: HETATM 23 H4' DT B 38 -13.436 0.197 26.232 1.00 0.00 H Missing atom added: HETATM 24 H3' DT B 38 -15.762 0.929 28.127 1.00 0.00 H Missing atom added: HETATM 27 H1' DT B 38 -13.611 -2.513 26.554 1.00 0.00 H Missing atom added: HETATM 25 H2' DT B 38 -14.932 -2.028 28.341 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT B 38 -16.377 -1.771 27.371 1.00 0.00 H Missing atom added: HETATM 32 H6 DT B 38 -14.132 -1.528 30.063 1.00 0.00 H Missing atom added: HETATM 28 H3 DT B 38 -12.276 -5.798 29.053 1.00 0.00 H Missing atom added: HETATM 30 H72 DT B 38 -12.538 -2.761 32.777 1.00 0.00 H Missing atom added: HETATM 29 H71 DT B 38 -14.087 -3.636 32.831 1.00 0.00 H Missing atom added: HETATM 31 H73 DT B 38 -14.047 -1.924 32.350 1.00 0.00 H Missing atom added: HETATM 24 H5'1 DG B 39 -15.389 -0.332 23.489 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG B 39 -17.171 -0.785 23.262 1.00 0.00 H Missing atom added: HETATM 26 H4' DG B 39 -16.631 -2.310 22.328 1.00 0.00 H Missing atom added: HETATM 27 H3' DG B 39 -18.879 -1.770 23.966 1.00 0.00 H Missing atom added: HETATM 30 H1' DG B 39 -17.675 -4.944 24.710 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG B 39 -18.456 -4.241 24.755 1.00 0.00 H Missing atom added: HETATM 28 H2' DG B 39 -19.824 -2.783 24.741 1.00 0.00 H Missing atom added: HETATM 31 H8 DG B 39 -18.235 -2.485 27.205 1.00 0.00 H Missing atom added: HETATM 34 H1 DG B 39 -14.998 -8.305 28.864 1.00 0.00 H Missing atom added: HETATM 32 H21 DG B 39 -15.547 -8.550 25.278 1.00 0.00 H Missing atom added: HETATM 33 H22 DG B 39 -15.359 -9.306 26.758 1.00 0.00 H Missing atom added: HETATM 24 H5'1 DG B 40 -17.840 -5.409 21.043 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG B 40 -18.812 -5.300 19.470 1.00 0.00 H Missing atom added: HETATM 26 H4' DG B 40 -17.785 -7.434 20.273 1.00 0.00 H Missing atom added: HETATM 27 H3' DG B 40 -20.747 -7.493 20.712 1.00 0.00 H Missing atom added: HETATM 30 H1' DG B 40 -19.193 -8.770 23.423 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG B 40 -20.082 -8.558 22.914 1.00 0.00 H Missing atom added: HETATM 28 H2' DG B 40 -21.626 -8.236 21.685 1.00 0.00 H Missing atom added: HETATM 31 H8 DG B 40 -20.579 -5.532 23.980 1.00 0.00 H Missing atom added: HETATM 34 H1 DG B 40 -18.054 -9.521 28.945 1.00 0.00 H Missing atom added: HETATM 32 H21 DG B 40 -17.668 -11.457 25.881 1.00 0.00 H Missing atom added: HETATM 33 H22 DG B 40 -17.866 -11.430 27.543 1.00 0.00 H Number of atoms: 634 Number of residues: 20 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. B 21 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. B 21 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. B 21 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. B 21 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. B 21 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. B 21 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. B 21 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 683 Number of angles built: 1241 Number of dihedrals built: 1855 Number of impropers built: 134 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- Missing atom added: HETATM 1 P DC C 1 16.876 -18.321 4.132 1.00 0.00 P Missing atom added: HETATM 21 H5'1 DC C 1 14.477 -19.755 3.667 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC C 1 13.951 -18.058 4.195 1.00 0.00 H Missing atom added: HETATM 23 H4' DC C 1 12.480 -19.692 4.921 1.00 0.00 H Missing atom added: HETATM 24 H3' DC C 1 11.589 -18.786 4.527 1.00 0.00 H Missing atom added: HETATM 27 H1' DC C 1 11.731 -18.234 7.684 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC C 1 11.276 -18.394 7.037 1.00 0.00 H Missing atom added: HETATM 25 H2' DC C 1 10.415 -18.118 5.254 1.00 0.00 H Missing atom added: HETATM 30 H6 DC C 1 13.079 -16.339 4.960 1.00 0.00 H Missing atom added: HETATM 28 H41 DC C 1 14.757 -12.421 7.004 1.00 0.00 H Missing atom added: HETATM 29 H42 DC C 1 14.735 -12.859 8.659 1.00 0.00 H Missing atom added: HETATM 31 H5 DC C 1 13.983 -13.778 4.900 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DC C 2 10.500 -22.077 8.970 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC C 2 9.019 -20.963 8.948 1.00 0.00 H Missing atom added: HETATM 23 H4' DC C 2 8.842 -20.659 10.494 1.00 0.00 H Missing atom added: HETATM 24 H3' DC C 2 7.680 -20.042 8.030 1.00 0.00 H Missing atom added: HETATM 27 H1' DC C 2 8.999 -17.134 10.365 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC C 2 7.230 -18.124 10.564 1.00 0.00 H Missing atom added: HETATM 25 H2' DC C 2 6.550 -18.251 8.689 1.00 0.00 H Missing atom added: HETATM 30 H6 DC C 2 8.784 -17.549 7.036 1.00 0.00 H Missing atom added: HETATM 28 H41 DC C 2 10.670 -13.353 5.961 1.00 0.00 H Missing atom added: HETATM 29 H42 DC C 2 11.053 -12.725 7.507 1.00 0.00 H Missing atom added: HETATM 31 H5 DC C 2 9.505 -15.596 5.303 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA C 3 6.893 -21.051 13.676 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA C 3 5.964 -19.448 13.662 1.00 0.00 H Missing atom added: HETATM 25 H4' DA C 3 6.333 -18.914 15.083 1.00 0.00 H Missing atom added: HETATM 26 H3' DA C 3 4.335 -18.820 13.741 1.00 0.00 H Missing atom added: HETATM 29 H1' DA C 3 6.019 -15.683 13.367 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA C 3 5.041 -16.233 13.368 1.00 0.00 H Missing atom added: HETATM 27 H2' DA C 3 3.469 -17.467 13.308 1.00 0.00 H Missing atom added: HETATM 30 H8 DA C 3 4.921 -17.487 10.530 1.00 0.00 H Missing atom added: HETATM 31 H61 DA C 3 6.216 -13.798 7.630 1.00 0.00 H Missing atom added: HETATM 32 H62 DA C 3 7.087 -12.355 7.905 1.00 0.00 H Missing atom added: HETATM 33 H2 DA C 3 8.327 -11.947 12.485 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA C 4 5.974 -15.715 17.413 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA C 4 5.317 -16.271 19.055 1.00 0.00 H Missing atom added: HETATM 25 H4' DA C 4 5.913 -13.907 18.328 1.00 0.00 H Missing atom added: HETATM 26 H3' DA C 4 2.946 -14.154 18.110 1.00 0.00 H Missing atom added: HETATM 29 H1' DA C 4 4.795 -12.303 15.437 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA C 4 3.768 -12.280 16.148 1.00 0.00 H Missing atom added: HETATM 27 H2' DA C 4 2.123 -12.971 17.051 1.00 0.00 H Missing atom added: HETATM 30 H8 DA C 4 2.927 -15.080 14.586 1.00 0.00 H Missing atom added: HETATM 31 H61 DA C 4 2.902 -13.560 9.942 1.00 0.00 H Missing atom added: HETATM 32 H62 DA C 4 3.613 -12.220 9.157 1.00 0.00 H Missing atom added: HETATM 33 H2 DA C 4 5.899 -9.427 12.258 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT C 5 5.352 -10.305 17.548 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT C 5 4.698 -8.990 18.548 1.00 0.00 H Missing atom added: HETATM 23 H4' DT C 5 4.860 -7.740 16.870 1.00 0.00 H Missing atom added: HETATM 24 H3' DT C 5 2.609 -7.973 18.430 1.00 0.00 H Missing atom added: HETATM 27 H1' DT C 5 2.590 -7.772 14.390 1.00 0.00 H Missing atom added: HETATM 25 H2' DT C 5 1.295 -9.350 16.869 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT C 5 0.841 -7.739 16.329 1.00 0.00 H Missing atom added: HETATM 32 H6 DT C 5 1.217 -10.810 15.621 1.00 0.00 H Missing atom added: HETATM 28 H3 DT C 5 1.731 -9.900 10.972 1.00 0.00 H Missing atom added: HETATM 30 H72 DT C 5 0.780 -13.645 13.859 1.00 0.00 H Missing atom added: HETATM 29 H71 DT C 5 -0.796 -12.837 13.681 1.00 0.00 H Missing atom added: HETATM 31 H73 DT C 5 0.074 -12.762 15.231 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA C 6 3.566 -4.711 15.421 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA C 6 3.582 -3.243 16.552 1.00 0.00 H Missing atom added: HETATM 25 H4' DA C 6 3.836 -3.152 14.063 1.00 0.00 H Missing atom added: HETATM 26 H3' DA C 6 0.985 -2.452 14.723 1.00 0.00 H Missing atom added: HETATM 29 H1' DA C 6 1.288 -4.404 11.819 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA C 6 0.714 -3.769 12.397 1.00 0.00 H Missing atom added: HETATM 27 H2' DA C 6 -0.276 -2.589 13.672 1.00 0.00 H Missing atom added: HETATM 30 H8 DA C 6 0.293 -6.185 14.795 1.00 0.00 H Missing atom added: HETATM 31 H61 DA C 6 -2.113 -9.497 12.100 1.00 0.00 H Missing atom added: HETATM 32 H62 DA C 6 -2.292 -9.697 10.413 1.00 0.00 H Missing atom added: HETATM 33 H2 DA C 6 -0.318 -6.088 8.037 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA C 7 2.072 -1.568 10.432 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA C 7 1.669 0.167 9.918 1.00 0.00 H Missing atom added: HETATM 25 H4' DA C 7 0.849 -1.319 8.367 1.00 0.00 H Missing atom added: HETATM 26 H3' DA C 7 -1.176 0.232 10.028 1.00 0.00 H Missing atom added: HETATM 29 H1' DA C 7 -2.014 -3.195 8.732 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA C 7 -2.491 -2.030 8.900 1.00 0.00 H Missing atom added: HETATM 27 H2' DA C 7 -2.883 -0.333 9.882 1.00 0.00 H Missing atom added: HETATM 30 H8 DA C 7 -2.038 -2.967 12.106 1.00 0.00 H Missing atom added: HETATM 31 H61 DA C 7 -4.619 -7.131 12.037 1.00 0.00 H Missing atom added: HETATM 32 H62 DA C 7 -5.097 -8.162 10.762 1.00 0.00 H Missing atom added: HETATM 33 H2 DA C 7 -3.908 -6.362 6.535 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT C 8 -2.330 -1.073 5.761 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT C 8 -1.855 0.188 4.603 1.00 0.00 H Missing atom added: HETATM 23 H4' DT C 8 -3.802 -1.495 4.160 1.00 0.00 H Missing atom added: HETATM 24 H3' DT C 8 -4.954 0.940 4.657 1.00 0.00 H Missing atom added: HETATM 27 H1' DT C 8 -5.624 -3.183 5.851 1.00 0.00 H Missing atom added: HETATM 25 H2' DT C 8 -6.153 -0.568 6.883 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT C 8 -7.216 -0.644 5.483 1.00 0.00 H Missing atom added: HETATM 32 H6 DT C 8 -5.054 -0.980 8.473 1.00 0.00 H Missing atom added: HETATM 28 H3 DT C 8 -7.171 -5.229 8.982 1.00 0.00 H Missing atom added: HETATM 30 H72 DT C 8 -4.584 -2.125 11.583 1.00 0.00 H Missing atom added: HETATM 29 H71 DT C 8 -6.235 -1.475 11.722 1.00 0.00 H Missing atom added: HETATM 31 H73 DT C 8 -5.017 -0.610 10.758 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DC C 9 -6.584 -2.452 1.435 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC C 9 -8.326 -2.458 2.067 1.00 0.00 H Missing atom added: HETATM 23 H4' DC C 9 -8.699 -3.971 1.814 1.00 0.00 H Missing atom added: HETATM 24 H3' DC C 9 -9.847 -1.646 2.399 1.00 0.00 H Missing atom added: HETATM 27 H1' DC C 9 -10.332 -4.145 5.015 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC C 9 -10.780 -3.200 4.482 1.00 0.00 H Missing atom added: HETATM 25 H2' DC C 9 -11.154 -1.503 3.495 1.00 0.00 H Missing atom added: HETATM 30 H6 DC C 9 -8.950 -1.221 5.686 1.00 0.00 H Missing atom added: HETATM 28 H41 DC C 9 -9.288 -1.659 10.363 1.00 0.00 H Missing atom added: HETATM 29 H42 DC C 9 -9.990 -3.210 10.542 1.00 0.00 H Missing atom added: HETATM 31 H5 DC C 9 -8.676 -0.328 8.224 1.00 0.00 H Missing atom added: HETATM 24 H5'1 DG C 10 -11.693 -5.953 2.179 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG C 10 -12.700 -6.158 0.638 1.00 0.00 H Missing atom added: HETATM 26 H4' DG C 10 -13.443 -7.580 2.334 1.00 0.00 H Missing atom added: HETATM 27 H3' DG C 10 -15.231 -5.118 1.727 1.00 0.00 H Missing atom added: HETATM 30 H1' DG C 10 -15.320 -5.826 5.018 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG C 10 -15.733 -5.424 4.219 1.00 0.00 H Missing atom added: HETATM 28 H2' DG C 10 -16.332 -4.469 2.568 1.00 0.00 H Missing atom added: HETATM 31 H8 DG C 10 -13.539 -2.863 3.771 1.00 0.00 H Missing atom added: HETATM 34 H1 DG C 10 -13.995 -4.071 10.500 1.00 0.00 H Missing atom added: HETATM 32 H21 DG C 10 -15.594 -6.922 8.941 1.00 0.00 H Missing atom added: HETATM 33 H22 DG C 10 -15.331 -5.947 10.276 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DC C 11 -16.582 -8.193 4.331 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC C 11 -18.262 -8.918 4.038 1.00 0.00 H Missing atom added: HETATM 23 H4' DC C 11 -18.118 -8.587 6.222 1.00 0.00 H Missing atom added: HETATM 24 H3' DC C 11 -19.972 -6.686 4.567 1.00 0.00 H Missing atom added: HETATM 27 H1' DC C 11 -18.538 -5.494 7.702 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC C 11 -19.485 -5.431 6.959 1.00 0.00 H Missing atom added: HETATM 25 H2' DC C 11 -20.609 -5.297 5.311 1.00 0.00 H Missing atom added: HETATM 30 H6 DC C 11 -17.730 -3.952 4.936 1.00 0.00 H Missing atom added: HETATM 28 H41 DC C 11 -15.606 -0.379 7.211 1.00 0.00 H Missing atom added: HETATM 29 H42 DC C 11 -15.809 -0.822 8.852 1.00 0.00 H Missing atom added: HETATM 31 H5 DC C 11 -16.380 -1.598 5.035 1.00 0.00 H Missing atom added: HETATM 24 H5'1 DG C 12 -21.300 -8.669 8.587 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG C 12 -21.668 -10.459 8.283 1.00 0.00 H Missing atom added: HETATM 26 H4' DG C 12 -21.687 -8.907 10.361 1.00 0.00 H Missing atom added: HETATM 27 H3' DG C 12 -24.224 -7.873 8.813 1.00 0.00 H Missing atom added: HETATM 30 H1' DG C 12 -22.018 -5.509 10.388 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG C 12 -23.022 -5.686 9.890 1.00 0.00 H Missing atom added: HETATM 28 H2' DG C 12 -24.682 -6.271 8.942 1.00 0.00 H Missing atom added: HETATM 31 H8 DG C 12 -22.394 -5.351 6.901 1.00 0.00 H Missing atom added: HETATM 34 H1 DG C 12 -19.258 -0.497 10.591 1.00 0.00 H Missing atom added: HETATM 32 H21 DG C 12 -20.316 -2.957 13.038 1.00 0.00 H Missing atom added: HETATM 33 H22 DG C 12 -19.973 -1.364 12.659 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA C 13 -23.262 -7.298 13.324 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA C 13 -23.641 -8.930 14.118 1.00 0.00 H Missing atom added: HETATM 25 H4' DA C 13 -22.969 -6.703 15.237 1.00 0.00 H Missing atom added: HETATM 26 H3' DA C 13 -26.092 -6.433 14.579 1.00 0.00 H Missing atom added: HETATM 29 H1' DA C 13 -24.101 -3.575 14.199 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA C 13 -25.066 -3.967 14.431 1.00 0.00 H Missing atom added: HETATM 27 H2' DA C 13 -26.795 -4.969 14.395 1.00 0.00 H Missing atom added: HETATM 30 H8 DA C 13 -25.366 -5.453 11.319 1.00 0.00 H Missing atom added: HETATM 31 H61 DA C 13 -24.257 -1.726 8.350 1.00 0.00 H Missing atom added: HETATM 32 H62 DA C 13 -23.408 -0.265 8.602 1.00 0.00 H Missing atom added: HETATM 33 H2 DA C 13 -22.165 0.241 13.163 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT C 14 -24.419 -3.457 17.004 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT C 14 -24.880 -3.559 18.717 1.00 0.00 H Missing atom added: HETATM 23 H4' DT C 14 -24.395 -1.261 17.865 1.00 0.00 H Missing atom added: HETATM 24 H3' DT C 14 -26.926 -1.450 18.666 1.00 0.00 H Missing atom added: HETATM 27 H1' DT C 14 -25.337 0.362 15.276 1.00 0.00 H Missing atom added: HETATM 25 H2' DT C 14 -27.824 -1.448 16.146 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT C 14 -27.747 0.260 16.558 1.00 0.00 H Missing atom added: HETATM 32 H6 DT C 14 -27.168 -2.498 14.284 1.00 0.00 H Missing atom added: HETATM 28 H3 DT C 14 -26.020 1.020 11.286 1.00 0.00 H Missing atom added: HETATM 30 H72 DT C 14 -27.208 -3.652 11.115 1.00 0.00 H Missing atom added: HETATM 29 H71 DT C 14 -28.771 -2.807 11.225 1.00 0.00 H Missing atom added: HETATM 31 H73 DT C 14 -28.164 -3.742 12.611 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT C 15 -25.002 2.657 18.121 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT C 15 -25.457 3.269 19.726 1.00 0.00 H Missing atom added: HETATM 23 H4' DT C 15 -24.924 4.965 17.878 1.00 0.00 H Missing atom added: HETATM 24 H3' DT C 15 -27.080 5.423 18.954 1.00 0.00 H Missing atom added: HETATM 27 H1' DT C 15 -26.565 5.056 14.898 1.00 0.00 H Missing atom added: HETATM 25 H2' DT C 15 -28.619 4.325 17.248 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT C 15 -28.449 5.944 16.583 1.00 0.00 H Missing atom added: HETATM 32 H6 DT C 15 -28.407 2.261 16.084 1.00 0.00 H Missing atom added: HETATM 28 H3 DT C 15 -28.305 3.581 11.500 1.00 0.00 H Missing atom added: HETATM 30 H72 DT C 15 -29.211 -0.367 14.117 1.00 0.00 H Missing atom added: HETATM 29 H71 DT C 15 -30.740 0.541 14.189 1.00 0.00 H Missing atom added: HETATM 31 H73 DT C 15 -29.712 0.411 15.635 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA C 16 -25.771 7.715 15.475 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA C 16 -25.815 9.526 15.866 1.00 0.00 H Missing atom added: HETATM 25 H4' DA C 16 -25.964 9.413 13.707 1.00 0.00 H Missing atom added: HETATM 26 H3' DA C 16 -28.627 10.103 15.272 1.00 0.00 H Missing atom added: HETATM 29 H1' DA C 16 -28.951 8.724 12.050 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA C 16 -29.399 9.268 12.849 1.00 0.00 H Missing atom added: HETATM 27 H2' DA C 16 -30.081 10.108 14.530 1.00 0.00 H Missing atom added: HETATM 30 H8 DA C 16 -29.708 6.749 15.003 1.00 0.00 H Missing atom added: HETATM 31 H61 DA C 16 -32.233 3.555 12.273 1.00 0.00 H Missing atom added: HETATM 32 H62 DA C 16 -32.456 3.405 10.586 1.00 0.00 H Missing atom added: HETATM 33 H2 DA C 16 -30.398 6.998 8.245 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT C 17 -27.982 11.431 10.907 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT C 17 -28.009 13.204 10.804 1.00 0.00 H Missing atom added: HETATM 23 H4' DT C 17 -29.004 12.064 8.819 1.00 0.00 H Missing atom added: HETATM 24 H3' DT C 17 -30.349 13.879 9.720 1.00 0.00 H Missing atom added: HETATM 27 H1' DT C 17 -31.615 10.014 8.812 1.00 0.00 H Missing atom added: HETATM 25 H2' DT C 17 -32.069 12.355 10.996 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT C 17 -32.764 12.453 9.382 1.00 0.00 H Missing atom added: HETATM 32 H6 DT C 17 -31.778 10.305 12.244 1.00 0.00 H Missing atom added: HETATM 28 H3 DT C 17 -34.191 7.054 9.720 1.00 0.00 H Missing atom added: HETATM 30 H72 DT C 17 -32.396 7.588 14.139 1.00 0.00 H Missing atom added: HETATM 29 H71 DT C 17 -33.953 8.445 14.238 1.00 0.00 H Missing atom added: HETATM 31 H73 DT C 17 -32.429 9.362 14.265 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT C 18 -32.838 12.237 6.084 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT C 18 -31.114 12.230 5.657 1.00 0.00 H Missing atom added: HETATM 23 H4' DT C 18 -33.442 11.484 4.544 1.00 0.00 H Missing atom added: HETATM 24 H3' DT C 18 -34.058 14.495 5.029 1.00 0.00 H Missing atom added: HETATM 27 H1' DT C 18 -35.845 10.617 5.634 1.00 0.00 H Missing atom added: HETATM 25 H2' DT C 18 -35.710 12.985 6.906 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT C 18 -36.663 13.378 5.481 1.00 0.00 H Missing atom added: HETATM 32 H6 DT C 18 -34.613 12.627 8.447 1.00 0.00 H Missing atom added: HETATM 28 H3 DT C 18 -37.221 8.704 9.195 1.00 0.00 H Missing atom added: HETATM 30 H72 DT C 18 -34.166 11.542 11.616 1.00 0.00 H Missing atom added: HETATM 29 H71 DT C 18 -35.720 12.402 11.735 1.00 0.00 H Missing atom added: HETATM 31 H73 DT C 18 -34.415 13.055 10.717 1.00 0.00 H Missing atom added: HETATM 24 H5'1 DG C 19 -36.808 11.918 1.128 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG C 19 -38.212 12.095 2.324 1.00 0.00 H Missing atom added: HETATM 26 H4' DG C 19 -39.177 11.168 1.816 1.00 0.00 H Missing atom added: HETATM 27 H3' DG C 19 -39.198 13.691 2.554 1.00 0.00 H Missing atom added: HETATM 30 H1' DG C 19 -40.385 11.369 5.157 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG C 19 -40.583 12.444 4.677 1.00 0.00 H Missing atom added: HETATM 28 H2' DG C 19 -40.317 14.235 3.830 1.00 0.00 H Missing atom added: HETATM 31 H8 DG C 19 -38.375 13.874 6.324 1.00 0.00 H Missing atom added: HETATM 34 H1 DG C 19 -40.669 8.556 9.976 1.00 0.00 H Missing atom added: HETATM 32 H21 DG C 19 -41.810 7.910 6.569 1.00 0.00 H Missing atom added: HETATM 33 H22 DG C 19 -42.014 7.694 8.216 1.00 0.00 H Missing atom added: HETATM 24 H5'1 DG C 20 -42.261 10.039 1.461 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG C 20 -43.117 10.506 -0.113 1.00 0.00 H Missing atom added: HETATM 26 H4' DG C 20 -43.870 8.713 1.537 1.00 0.00 H Missing atom added: HETATM 27 H3' DG C 20 -45.558 11.149 1.860 1.00 0.00 H Missing atom added: HETATM 30 H1' DG C 20 -44.610 9.779 4.958 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG C 20 -45.332 10.408 4.380 1.00 0.00 H Missing atom added: HETATM 28 H2' DG C 20 -46.369 11.602 3.158 1.00 0.00 H Missing atom added: HETATM 31 H8 DG C 20 -43.227 12.920 4.230 1.00 0.00 H Missing atom added: HETATM 34 H1 DG C 20 -43.319 10.124 10.514 1.00 0.00 H Missing atom added: HETATM 32 H21 DG C 20 -45.141 7.772 8.425 1.00 0.00 H Missing atom added: HETATM 33 H22 DG C 20 -44.887 8.462 9.928 1.00 0.00 H Number of atoms: 634 Number of residues: 20 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. C 1 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. C 1 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. C 1 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. C 1 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. C 1 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. C 1 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. C 1 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 683 Number of angles built: 1241 Number of dihedrals built: 1855 Number of impropers built: 134 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- Missing atom added: HETATM 1 P DC D 21 -46.006 9.472 20.087 1.00 0.00 P Missing atom added: HETATM 21 H5'1 DC D 21 -44.922 9.316 17.474 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC D 21 -46.704 9.774 17.250 1.00 0.00 H Missing atom added: HETATM 23 H4' DC D 21 -45.926 8.426 15.524 1.00 0.00 H Missing atom added: HETATM 24 H3' DC D 21 -44.158 7.048 16.962 1.00 0.00 H Missing atom added: HETATM 27 H1' DC D 21 -44.937 7.318 13.618 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC D 21 -44.428 6.881 14.330 1.00 0.00 H Missing atom added: HETATM 25 H2' DC D 21 -43.166 6.484 15.829 1.00 0.00 H Missing atom added: HETATM 30 H6 DC D 21 -43.429 9.680 15.719 1.00 0.00 H Missing atom added: HETATM 28 H41 DC D 21 -41.668 12.752 12.609 1.00 0.00 H Missing atom added: HETATM 29 H42 DC D 21 -42.285 12.169 11.123 1.00 0.00 H Missing atom added: HETATM 31 H5 DC D 21 -41.915 11.811 15.017 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DC D 22 -46.554 3.458 13.586 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC D 22 -44.800 2.869 13.463 1.00 0.00 H Missing atom added: HETATM 23 H4' DC D 22 -44.633 2.837 11.811 1.00 0.00 H Missing atom added: HETATM 24 H3' DC D 22 -42.931 3.223 14.183 1.00 0.00 H Missing atom added: HETATM 27 H1' DC D 22 -42.423 5.115 10.665 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC D 22 -42.042 2.804 10.972 1.00 0.00 H Missing atom added: HETATM 25 H2' DC D 22 -41.037 3.269 12.636 1.00 0.00 H Missing atom added: HETATM 30 H6 DC D 22 -41.864 5.568 14.016 1.00 0.00 H Missing atom added: HETATM 28 H41 DC D 22 -39.675 9.749 13.778 1.00 0.00 H Missing atom added: HETATM 29 H42 DC D 22 -39.622 10.041 12.092 1.00 0.00 H Missing atom added: HETATM 31 H5 DC D 22 -40.601 7.696 15.097 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA D 23 -43.928 0.083 9.533 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA D 23 -42.089 0.193 9.334 1.00 0.00 H Missing atom added: HETATM 25 H4' DA D 23 -42.053 0.543 7.717 1.00 0.00 H Missing atom added: HETATM 26 H3' DA D 23 -40.457 -0.331 9.333 1.00 0.00 H Missing atom added: HETATM 29 H1' DA D 23 -39.422 2.982 8.455 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA D 23 -39.144 1.975 8.868 1.00 0.00 H Missing atom added: HETATM 27 H2' DA D 23 -38.882 0.117 9.557 1.00 0.00 H Missing atom added: HETATM 30 H8 DA D 23 -39.210 2.179 11.808 1.00 0.00 H Missing atom added: HETATM 31 H61 DA D 23 -37.243 6.567 12.567 1.00 0.00 H Missing atom added: HETATM 32 H62 DA D 23 -36.864 7.857 11.514 1.00 0.00 H Missing atom added: HETATM 33 H2 DA D 23 -38.296 6.934 7.069 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA D 24 -40.104 1.588 4.980 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA D 24 -40.945 0.481 3.754 1.00 0.00 H Missing atom added: HETATM 25 H4' DA D 24 -39.413 2.554 3.403 1.00 0.00 H Missing atom added: HETATM 26 H3' DA D 24 -37.411 0.152 3.755 1.00 0.00 H Missing atom added: HETATM 29 H1' DA D 24 -36.694 3.504 5.199 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA D 24 -36.177 2.530 4.619 1.00 0.00 H Missing atom added: HETATM 27 H2' DA D 24 -35.776 0.604 4.263 1.00 0.00 H Missing atom added: HETATM 30 H8 DA D 24 -37.266 0.871 7.407 1.00 0.00 H Missing atom added: HETATM 31 H61 DA D 24 -35.107 3.521 10.897 1.00 0.00 H Missing atom added: HETATM 32 H62 DA D 24 -34.475 5.107 10.914 1.00 0.00 H Missing atom added: HETATM 33 H2 DA D 24 -34.771 7.134 6.626 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT D 25 -35.858 4.030 2.007 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT D 25 -35.425 3.834 0.296 1.00 0.00 H Missing atom added: HETATM 23 H4' DT D 25 -34.007 5.427 1.671 1.00 0.00 H Missing atom added: HETATM 24 H3' DT D 25 -32.589 3.627 0.573 1.00 0.00 H Missing atom added: HETATM 27 H1' DT D 25 -32.570 5.135 4.497 1.00 0.00 H Missing atom added: HETATM 25 H2' DT D 25 -32.148 2.383 2.972 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT D 25 -30.871 3.586 2.850 1.00 0.00 H Missing atom added: HETATM 32 H6 DT D 25 -33.518 1.822 4.767 1.00 0.00 H Missing atom added: HETATM 28 H3 DT D 25 -31.679 4.468 8.278 1.00 0.00 H Missing atom added: HETATM 30 H72 DT D 25 -34.505 0.606 7.726 1.00 0.00 H Missing atom added: HETATM 29 H71 DT D 25 -32.851 -0.046 7.651 1.00 0.00 H Missing atom added: HETATM 31 H73 DT D 25 -33.853 0.012 6.183 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA D 26 -30.992 7.088 2.507 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA D 26 -29.538 7.686 1.526 1.00 0.00 H Missing atom added: HETATM 25 H4' DA D 26 -29.284 8.440 3.593 1.00 0.00 H Missing atom added: HETATM 26 H3' DA D 26 -27.301 6.359 2.537 1.00 0.00 H Missing atom added: HETATM 29 H1' DA D 26 -27.927 6.383 6.130 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA D 26 -27.110 6.247 5.294 1.00 0.00 H Missing atom added: HETATM 27 H2' DA D 26 -26.201 5.618 3.628 1.00 0.00 H Missing atom added: HETATM 30 H8 DA D 26 -29.116 3.582 4.315 1.00 0.00 H Missing atom added: HETATM 31 H61 DA D 26 -29.155 0.998 8.491 1.00 0.00 H Missing atom added: HETATM 32 H62 DA D 26 -28.781 1.417 10.103 1.00 0.00 H Missing atom added: HETATM 33 H2 DA D 26 -27.300 5.913 10.437 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA D 27 -26.351 9.105 5.938 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA D 27 -24.881 10.212 5.721 1.00 0.00 H Missing atom added: HETATM 25 H4' DA D 27 -25.034 9.566 7.877 1.00 0.00 H Missing atom added: HETATM 26 H3' DA D 27 -22.709 8.312 6.276 1.00 0.00 H Missing atom added: HETATM 29 H1' DA D 27 -24.053 6.382 9.004 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA D 27 -23.113 6.665 8.455 1.00 0.00 H Missing atom added: HETATM 27 H2' DA D 27 -21.824 7.007 6.965 1.00 0.00 H Missing atom added: HETATM 30 H8 DA D 27 -24.658 5.226 5.628 1.00 0.00 H Missing atom added: HETATM 31 H61 DA D 27 -25.798 0.841 7.449 1.00 0.00 H Missing atom added: HETATM 32 H62 DA D 27 -25.876 0.236 9.044 1.00 0.00 H Missing atom added: HETATM 33 H2 DA D 27 -24.907 3.657 12.222 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT D 28 -22.468 8.661 10.711 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT D 28 -21.100 9.686 11.196 1.00 0.00 H Missing atom added: HETATM 23 H4' DT D 28 -21.461 7.697 12.682 1.00 0.00 H Missing atom added: HETATM 24 H3' DT D 28 -19.118 7.995 11.867 1.00 0.00 H Missing atom added: HETATM 27 H1' DT D 28 -21.752 4.606 12.009 1.00 0.00 H Missing atom added: HETATM 25 H2' DT D 28 -19.382 5.556 10.425 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT D 28 -18.821 5.155 12.043 1.00 0.00 H Missing atom added: HETATM 32 H6 DT D 28 -20.952 5.101 8.739 1.00 0.00 H Missing atom added: HETATM 28 H3 DT D 28 -22.595 1.049 10.633 1.00 0.00 H Missing atom added: HETATM 30 H72 DT D 28 -22.612 3.332 6.375 1.00 0.00 H Missing atom added: HETATM 29 H71 DT D 28 -21.033 2.513 6.450 1.00 0.00 H Missing atom added: HETATM 31 H73 DT D 28 -21.125 4.285 6.586 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DC D 29 -19.894 5.343 14.733 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC D 29 -19.096 5.974 16.282 1.00 0.00 H Missing atom added: HETATM 23 H4' DC D 29 -19.351 3.687 16.384 1.00 0.00 H Missing atom added: HETATM 24 H3' DC D 29 -16.452 4.471 15.254 1.00 0.00 H Missing atom added: HETATM 27 H1' DC D 29 -17.666 1.481 14.263 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC D 29 -16.893 2.147 14.293 1.00 0.00 H Missing atom added: HETATM 25 H2' DC D 29 -15.490 3.559 14.481 1.00 0.00 H Missing atom added: HETATM 30 H6 DC D 29 -17.012 4.014 12.125 1.00 0.00 H Missing atom added: HETATM 28 H41 DC D 29 -18.357 1.868 8.114 1.00 0.00 H Missing atom added: HETATM 29 H42 DC D 29 -19.052 0.418 8.703 1.00 0.00 H Missing atom added: HETATM 31 H5 DC D 29 -17.268 3.861 9.426 1.00 0.00 H Missing atom added: HETATM 24 H5'1 DG D 30 -17.216 0.838 17.825 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG D 30 -16.394 0.963 19.480 1.00 0.00 H Missing atom added: HETATM 26 H4' DG D 30 -17.295 -1.186 18.597 1.00 0.00 H Missing atom added: HETATM 27 H3' DG D 30 -14.258 -1.005 18.161 1.00 0.00 H Missing atom added: HETATM 30 H1' DG D 30 -15.882 -2.521 15.503 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG D 30 -15.017 -2.450 16.072 1.00 0.00 H Missing atom added: HETATM 28 H2' DG D 30 -13.406 -1.876 17.107 1.00 0.00 H Missing atom added: HETATM 31 H8 DG D 30 -14.384 0.804 15.283 1.00 0.00 H Missing atom added: HETATM 34 H1 DG D 30 -16.773 -2.271 9.632 1.00 0.00 H Missing atom added: HETATM 32 H21 DG D 30 -17.423 -4.647 12.284 1.00 0.00 H Missing atom added: HETATM 33 H22 DG D 30 -17.124 -4.330 10.668 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DC D 31 -16.644 -4.591 17.596 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC D 31 -16.293 -6.070 18.657 1.00 0.00 H Missing atom added: HETATM 23 H4' DC D 31 -16.869 -6.887 16.683 1.00 0.00 H Missing atom added: HETATM 24 H3' DC D 31 -13.804 -6.902 17.462 1.00 0.00 H Missing atom added: HETATM 27 H1' DC D 31 -14.609 -6.855 13.954 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC D 31 -13.929 -7.310 14.767 1.00 0.00 H Missing atom added: HETATM 25 H2' DC D 31 -12.653 -7.309 16.306 1.00 0.00 H Missing atom added: HETATM 30 H6 DC D 31 -13.121 -4.369 15.777 1.00 0.00 H Missing atom added: HETATM 28 H41 DC D 31 -11.973 -1.512 12.177 1.00 0.00 H Missing atom added: HETATM 29 H42 DC D 31 -12.712 -2.292 10.844 1.00 0.00 H Missing atom added: HETATM 31 H5 DC D 31 -11.915 -2.188 14.697 1.00 0.00 H Missing atom added: HETATM 24 H5'1 DG D 32 -15.473 -10.101 14.922 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG D 32 -15.213 -11.847 15.483 1.00 0.00 H Missing atom added: HETATM 26 H4' DG D 32 -15.172 -11.447 13.089 1.00 0.00 H Missing atom added: HETATM 27 H3' DG D 32 -12.409 -11.956 14.301 1.00 0.00 H Missing atom added: HETATM 30 H1' DG D 32 -12.584 -9.557 11.561 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG D 32 -11.951 -10.512 11.982 1.00 0.00 H Missing atom added: HETATM 28 H2' DG D 32 -11.001 -11.581 13.378 1.00 0.00 H Missing atom added: HETATM 31 H8 DG D 32 -11.492 -8.515 14.755 1.00 0.00 H Missing atom added: HETATM 34 H1 DG D 32 -10.641 -4.825 9.039 1.00 0.00 H Missing atom added: HETATM 32 H21 DG D 32 -12.238 -7.936 7.932 1.00 0.00 H Missing atom added: HETATM 33 H22 DG D 32 -11.256 -6.626 7.585 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA D 33 -13.600 -12.345 10.100 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA D 33 -13.298 -13.985 9.290 1.00 0.00 H Missing atom added: HETATM 25 H4' DA D 33 -13.099 -12.520 7.676 1.00 0.00 H Missing atom added: HETATM 26 H3' DA D 33 -10.535 -13.966 8.713 1.00 0.00 H Missing atom added: HETATM 29 H1' DA D 33 -9.915 -10.786 7.477 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA D 33 -9.581 -11.763 7.612 1.00 0.00 H Missing atom added: HETATM 27 H2' DA D 33 -9.032 -13.533 8.364 1.00 0.00 H Missing atom added: HETATM 30 H8 DA D 33 -9.876 -11.585 11.046 1.00 0.00 H Missing atom added: HETATM 31 H61 DA D 33 -7.456 -7.454 12.112 1.00 0.00 H Missing atom added: HETATM 32 H62 DA D 33 -7.025 -6.097 11.168 1.00 0.00 H Missing atom added: HETATM 33 H2 DA D 33 -8.236 -6.700 6.612 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT D 34 -10.544 -11.808 5.036 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT D 34 -10.363 -12.750 3.541 1.00 0.00 H Missing atom added: HETATM 23 H4' DT D 34 -9.096 -10.800 3.209 1.00 0.00 H Missing atom added: HETATM 24 H3' DT D 34 -7.804 -13.143 2.912 1.00 0.00 H Missing atom added: HETATM 27 H1' DT D 34 -6.394 -9.844 4.907 1.00 0.00 H Missing atom added: HETATM 25 H2' DT D 34 -6.537 -13.004 5.129 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT D 34 -5.442 -12.164 4.037 1.00 0.00 H Missing atom added: HETATM 32 H6 DT D 34 -7.034 -12.524 7.222 1.00 0.00 H Missing atom added: HETATM 28 H3 DT D 34 -4.954 -8.449 8.510 1.00 0.00 H Missing atom added: HETATM 30 H72 DT D 34 -7.292 -12.137 10.534 1.00 0.00 H Missing atom added: HETATM 29 H71 DT D 34 -5.623 -12.732 10.375 1.00 0.00 H Missing atom added: HETATM 31 H73 DT D 34 -6.906 -13.394 9.337 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT D 35 -6.083 -9.138 2.161 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT D 35 -5.380 -9.251 0.533 1.00 0.00 H Missing atom added: HETATM 23 H4' DT D 35 -4.257 -7.511 1.697 1.00 0.00 H Missing atom added: HETATM 24 H3' DT D 35 -2.775 -9.275 0.557 1.00 0.00 H Missing atom added: HETATM 27 H1' DT D 35 -2.393 -7.669 4.378 1.00 0.00 H Missing atom added: HETATM 25 H2' DT D 35 -2.061 -10.440 2.822 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT D 35 -0.868 -9.161 2.633 1.00 0.00 H Missing atom added: HETATM 32 H6 DT D 35 -3.407 -10.988 4.545 1.00 0.00 H Missing atom added: HETATM 28 H3 DT D 35 -1.386 -8.762 8.241 1.00 0.00 H Missing atom added: HETATM 30 H72 DT D 35 -4.228 -12.569 7.372 1.00 0.00 H Missing atom added: HETATM 29 H71 DT D 35 -2.574 -13.171 7.100 1.00 0.00 H Missing atom added: HETATM 31 H73 DT D 35 -3.674 -12.934 5.722 1.00 0.00 H Missing atom added: HETATM 23 H5'1 DA D 36 -1.181 -5.510 2.386 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA D 36 0.287 -4.971 1.391 1.00 0.00 H Missing atom added: HETATM 25 H4' DA D 36 0.609 -4.193 3.417 1.00 0.00 H Missing atom added: HETATM 26 H3' DA D 36 2.538 -6.190 2.231 1.00 0.00 H Missing atom added: HETATM 29 H1' DA D 36 2.138 -6.335 5.845 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA D 36 2.892 -6.374 4.974 1.00 0.00 H Missing atom added: HETATM 27 H2' DA D 36 3.723 -6.933 3.243 1.00 0.00 H Missing atom added: HETATM 30 H8 DA D 36 0.832 -9.020 3.911 1.00 0.00 H Missing atom added: HETATM 31 H61 DA D 36 0.932 -11.888 7.848 1.00 0.00 H Missing atom added: HETATM 32 H62 DA D 36 1.379 -11.610 9.472 1.00 0.00 H Missing atom added: HETATM 33 H2 DA D 36 2.779 -7.105 10.124 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT D 37 3.460 -3.974 5.674 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT D 37 4.604 -2.634 5.446 1.00 0.00 H Missing atom added: HETATM 23 H4' DT D 37 4.945 -3.370 7.627 1.00 0.00 H Missing atom added: HETATM 24 H3' DT D 37 7.126 -3.512 5.929 1.00 0.00 H Missing atom added: HETATM 27 H1' DT D 37 5.972 -6.250 8.728 1.00 0.00 H Missing atom added: HETATM 25 H2' DT D 37 6.990 -6.053 5.691 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT D 37 8.022 -5.885 7.106 1.00 0.00 H Missing atom added: HETATM 32 H6 DT D 37 5.313 -7.569 5.478 1.00 0.00 H Missing atom added: HETATM 28 H3 DT D 37 4.942 -10.071 9.521 1.00 0.00 H Missing atom added: HETATM 30 H72 DT D 37 3.344 -10.252 4.942 1.00 0.00 H Missing atom added: HETATM 29 H71 DT D 37 4.984 -10.939 4.867 1.00 0.00 H Missing atom added: HETATM 31 H73 DT D 37 4.660 -9.332 4.178 1.00 0.00 H Missing atom added: HETATM 21 H5'1 DT D 38 7.375 -4.498 10.226 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT D 38 8.484 -3.283 10.897 1.00 0.00 H Missing atom added: HETATM 23 H4' DT D 38 8.784 -5.036 12.338 1.00 0.00 H Missing atom added: HETATM 24 H3' DT D 38 11.008 -4.166 10.777 1.00 0.00 H Missing atom added: HETATM 27 H1' DT D 38 10.147 -8.010 11.412 1.00 0.00 H Missing atom added: HETATM 25 H2' DT D 38 10.919 -5.984 9.171 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT D 38 11.987 -6.689 10.379 1.00 0.00 H Missing atom added: HETATM 32 H6 DT D 38 9.957 -7.012 7.948 1.00 0.00 H Missing atom added: HETATM 28 H3 DT D 38 8.150 -11.191 9.352 1.00 0.00 H Missing atom added: HETATM 30 H72 DT D 38 8.150 -8.425 5.450 1.00 0.00 H Missing atom added: HETATM 29 H71 DT D 38 9.710 -9.276 5.334 1.00 0.00 H Missing atom added: HETATM 31 H73 DT D 38 9.669 -7.537 5.706 1.00 0.00 H Missing atom added: HETATM 24 H5'1 DG D 39 11.676 -6.550 14.384 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG D 39 12.292 -5.204 15.497 1.00 0.00 H Missing atom added: HETATM 26 H4' DG D 39 12.188 -7.748 15.896 1.00 0.00 H Missing atom added: HETATM 27 H3' DG D 39 14.963 -7.257 14.657 1.00 0.00 H Missing atom added: HETATM 30 H1' DG D 39 13.214 -10.174 13.558 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG D 39 14.208 -9.684 13.700 1.00 0.00 H Missing atom added: HETATM 28 H2' DG D 39 15.788 -8.469 13.853 1.00 0.00 H Missing atom added: HETATM 31 H8 DG D 39 13.887 -7.612 11.202 1.00 0.00 H Missing atom added: HETATM 34 H1 DG D 39 10.668 -13.444 9.581 1.00 0.00 H Missing atom added: HETATM 32 H21 DG D 39 11.266 -13.657 13.167 1.00 0.00 H Missing atom added: HETATM 33 H22 DG D 39 11.024 -14.428 11.702 1.00 0.00 H Missing atom added: HETATM 24 H5'1 DG D 40 13.558 -11.005 17.517 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG D 40 14.375 -10.846 19.172 1.00 0.00 H Missing atom added: HETATM 26 H4' DG D 40 13.741 -13.064 18.244 1.00 0.00 H Missing atom added: HETATM 27 H3' DG D 40 16.737 -12.563 17.889 1.00 0.00 H Missing atom added: HETATM 30 H1' DG D 40 15.312 -14.116 15.129 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG D 40 16.198 -13.899 15.710 1.00 0.00 H Missing atom added: HETATM 28 H2' DG D 40 17.704 -13.231 16.843 1.00 0.00 H Missing atom added: HETATM 31 H8 DG D 40 16.852 -10.965 14.625 1.00 0.00 H Missing atom added: HETATM 34 H1 DG D 40 13.661 -14.441 9.653 1.00 0.00 H Missing atom added: HETATM 32 H21 DG D 40 13.161 -16.433 12.643 1.00 0.00 H Missing atom added: HETATM 33 H22 DG D 40 13.322 -16.354 10.979 1.00 0.00 H Number of atoms: 634 Number of residues: 20 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. D 21 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. D 21 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. D 21 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. D 21 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. D 21 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. D 21 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. D 21 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 683 Number of angles built: 1241 Number of dihedrals built: 1855 Number of impropers built: 134 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- Error: unknown residue: HOH Error: unknown residue: HOH Error: unknown residue: HOH Error: unknown residue: HOH Error: unknown residue(s). Molecule discarded. ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 3206684 Number of van der Waals pairs: 360740 Number of H-bonds built: 97 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 40 Number of molecules (chains) read: 4 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 1772650.1051 kcal/mol (1763387.3142 without restraints) Performing minimization step: 2. Total energy = 1697608.5249 kcal/mol (1689079.0452 without restraints) Performing minimization step: 3. Total energy = 1628478.5314 kcal/mol (1620612.3990 without restraints) Performing minimization step: 4. Total energy = 1564700.6925 kcal/mol (1557435.6681 without restraints) Performing minimization step: 5. Total energy = 1505776.4135 kcal/mol (1499056.9170 without restraints) Performing minimization step: 6. Total energy = 1451259.6890 kcal/mol (1445035.9136 without restraints) Performing minimization step: 7. Total energy = 1400750.2330 kcal/mol (1394977.4059 without restraints) Performing minimization step: 8. Total energy = 1353887.7297 kcal/mol (1348525.4915 without restraints) Performing minimization step: 9. Total energy = 1310347.0032 kcal/mol (1305358.8857 without restraints) Performing minimization step: 10. Total energy = 1269833.9336 kcal/mol (1265186.9167 without restraints) Performing minimization step: 11. Total energy = 1232081.9874 kcal/mol (1227746.1219 without restraints) Performing minimization step: 12. Total energy = 1196849.2551 kcal/mol (1192797.3390 without restraints) Performing minimization step: 13. Total energy = 1163915.9023 kcal/mol (1160123.2023 without restraints) Performing minimization step: 14. Total energy = 1133081.9686 kcal/mol (1129525.9781 without restraints) Performing minimization step: 15. Total energy = 1104165.4522 kcal/mol (1100825.6810 without restraints) Performing minimization step: 16. Total energy = 1077000.6347 kcal/mol (1073858.4229 without restraints) Performing minimization step: 17. Total energy = 1051436.6043 kcal/mol (1048474.9596 without restraints) Performing minimization step: 18. Total energy = 1027335.9470 kcal/mol (1024539.3985 without restraints) Performing minimization step: 19. Total energy = 1004573.5772 kcal/mol (1001928.0447 without restraints) Performing minimization step: 20. Total energy = 983035.6854 kcal/mol (980528.3619 without restraints) Performing minimization step: 21. Total energy = 962618.7859 kcal/mol (960238.0303 without restraints) Performing minimization step: 22. Total energy = 943228.8476 kcal/mol (940964.0863 without restraints) Performing minimization step: 23. Total energy = 924780.4965 kcal/mol (922622.1338 without restraints) Performing minimization step: 24. Total energy = 907196.2815 kcal/mol (905135.6156 without restraints) Performing minimization step: 25. Total energy = 890405.9936 kcal/mol (888435.1398 without restraints) Performing minimization step: 26. Total energy = 874346.0355 kcal/mol (872457.8542 without restraints) Performing minimization step: 27. Total energy = 858958.8355 kcal/mol (857146.8656 without restraints) Performing minimization step: 28. Total energy = 844192.3033 kcal/mol (842450.7003 without restraints) Performing minimization step: 29. Total energy = 829999.3245 kcal/mol (828322.8030 without restraints) Performing minimization step: 30. Total energy = 816337.2937 kcal/mol (814721.0747 without restraints) Performing minimization step: 31. Total energy = 803167.6833 kcal/mol (801607.4450 without restraints) Performing minimization step: 32. Total energy = 790455.6459 kcal/mol (788947.4787 without restraints) Performing minimization step: 33. Total energy = 778169.6499 kcal/mol (776710.0152 without restraints) Performing minimization step: 34. Total energy = 766281.1473 kcal/mol (764866.8406 without restraints) Performing minimization step: 35. Total energy = 754764.2694 kcal/mol (753392.3855 without restraints) Performing minimization step: 36. Total energy = 743595.5544 kcal/mol (742263.4569 without restraints) Performing minimization step: 37. Total energy = 732753.6967 kcal/mol (731458.9901 without restraints) Performing minimization step: 38. Total energy = 722219.3241 kcal/mol (720959.8287 without restraints) Performing minimization step: 39. Total energy = 711974.7965 kcal/mol (710748.5259 without restraints) Performing minimization step: 40. Total energy = 702004.0253 kcal/mol (700809.1664 without restraints) Performing minimization step: 41. Total energy = 692292.3113 kcal/mol (691127.2059 without restraints) Performing minimization step: 42. Total energy = 682826.2016 kcal/mol (681689.3309 without restraints) Performing minimization step: 43. Total energy = 673593.3599 kcal/mol (672483.3296 without restraints) Performing minimization step: 44. Total energy = 664582.4527 kcal/mol (663497.9808 without restraints) Performing minimization step: 45. Total energy = 655783.0468 kcal/mol (654722.9516 without restraints) Performing minimization step: 46. Total energy = 647185.5181 kcal/mol (646148.7087 without restraints) Performing minimization step: 47. Total energy = 638780.9717 kcal/mol (637766.4388 without restraints) Performing minimization step: 48. Total energy = 630561.1701 kcal/mol (629567.9778 without restraints) Performing minimization step: 49. Total energy = 622518.4684 kcal/mol (621545.7474 without restraints) Performing minimization step: 50. Total energy = 614645.7581 kcal/mol (613692.6992 without restraints) Performing minimization step: 51. Total energy = 606936.4163 kcal/mol (606002.2649 without restraints) Performing minimization step: 52. Total energy = 599384.2604 kcal/mol (598468.3115 without restraints) Performing minimization step: 53. Total energy = 591983.5084 kcal/mol (591085.1017 without restraints) Performing minimization step: 54. Total energy = 584728.7422 kcal/mol (583847.2587 without restraints) Performing minimization step: 55. Total energy = 577614.8760 kcal/mol (576749.7340 without restraints) Performing minimization step: 56. Total energy = 570637.1276 kcal/mol (569787.7795 without restraints) Performing minimization step: 57. Total energy = 563790.9921 kcal/mol (562956.9220 without restraints) Performing minimization step: 58. Total energy = 557072.2198 kcal/mol (556252.9402 without restraints) Performing minimization step: 59. Total energy = 550476.7944 kcal/mol (549671.8445 without restraints) Performing minimization step: 60. Total energy = 544000.9150 kcal/mol (543209.8583 without restraints) Performing minimization step: 61. Total energy = 537640.9787 kcal/mol (536863.4011 without restraints) Performing minimization step: 62. Total energy = 531393.5665 kcal/mol (530629.0747 without restraints) Performing minimization step: 63. Total energy = 525255.4279 kcal/mol (524503.6480 without restraints) Performing minimization step: 64. Total energy = 519223.4705 kcal/mol (518484.0462 without restraints) Performing minimization step: 65. Total energy = 513294.7471 kcal/mol (512567.3388 without restraints) Performing minimization step: 66. Total energy = 507466.4458 kcal/mol (506750.7294 without restraints) Performing minimization step: 67. Total energy = 501735.8817 kcal/mol (501031.5473 without restraints) Performing minimization step: 68. Total energy = 496100.4872 kcal/mol (495407.2385 without restraints) Performing minimization step: 69. Total energy = 490557.8050 kcal/mol (489875.3582 without restraints) Performing minimization step: 70. Total energy = 485105.4805 kcal/mol (484433.5635 without restraints) Performing minimization step: 71. Total energy = 479741.2559 kcal/mol (479079.6078 without restraints) Performing minimization step: 72. Total energy = 474462.9639 kcal/mol (473811.3339 without restraints) Performing minimization step: 73. Total energy = 469268.5222 kcal/mol (468626.6694 without restraints) Performing minimization step: 74. Total energy = 464155.9286 kcal/mol (463523.6214 without restraints) Performing minimization step: 75. Total energy = 459123.2566 kcal/mol (458500.2718 without restraints) Performing minimization step: 76. Total energy = 454168.6508 kcal/mol (453554.7734 without restraints) Performing minimization step: 77. Total energy = 449290.3230 kcal/mol (448685.3459 without restraints) Performing minimization step: 78. Total energy = 444486.5489 kcal/mol (443890.2721 without restraints) Performing minimization step: 79. Total energy = 439755.6642 kcal/mol (439167.8949 without restraints) Performing minimization step: 80. Total energy = 435096.0619 kcal/mol (434516.6135 without restraints) Performing minimization step: 81. Total energy = 430506.1892 kcal/mol (429934.8816 without restraints) Performing minimization step: 82. Total energy = 425984.5448 kcal/mol (425421.2036 without restraints) Performing minimization step: 83. Total energy = 421529.6763 kcal/mol (420974.1331 without restraints) Performing minimization step: 84. Total energy = 417140.1779 kcal/mol (416592.2693 without restraints) Performing minimization step: 85. Total energy = 412814.6885 kcal/mol (412274.2566 without restraints) Performing minimization step: 86. Total energy = 408551.8891 kcal/mol (408018.7803 without restraints) Performing minimization step: 87. Total energy = 404350.5010 kcal/mol (403824.5670 without restraints) Performing minimization step: 88. Total energy = 400209.2846 kcal/mol (399690.3811 without restraints) Performing minimization step: 89. Total energy = 396127.0368 kcal/mol (395615.0241 without restraints) Performing minimization step: 90. Total energy = 392102.5902 kcal/mol (391597.3325 without restraints) Performing minimization step: 91. Total energy = 388134.8109 kcal/mol (387636.1762 without restraints) Performing minimization step: 92. Total energy = 384222.5976 kcal/mol (383730.4578 without restraints) Performing minimization step: 93. Total energy = 380364.8801 kcal/mol (379879.1107 without restraints) Performing minimization step: 94. Total energy = 376560.6177 kcal/mol (376081.0976 without restraints) Performing minimization step: 95. Total energy = 372808.7988 kcal/mol (372335.4103 without restraints) Performing minimization step: 96. Total energy = 369108.4390 kcal/mol (368641.0674 without restraints) Performing minimization step: 97. Total energy = 365458.5805 kcal/mol (364997.1143 without restraints) Performing minimization step: 98. Total energy = 361858.2909 kcal/mol (361402.6215 without restraints) Performing minimization step: 99. Total energy = 358306.6623 kcal/mol (357856.6840 without restraints) Performing minimization step: 100. Total energy = 354802.8102 kcal/mol (354358.4199 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 101. Total energy = 351345.8729 kcal/mol (350906.9703 without restraints) Performing minimization step: 102. Total energy = 347935.0108 kcal/mol (347501.4980 without restraints) Performing minimization step: 103. Total energy = 344569.4051 kcal/mol (344141.1867 without restraints) Performing minimization step: 104. Total energy = 341248.2577 kcal/mol (340825.2407 without restraints) Performing minimization step: 105. Total energy = 337970.7898 kcal/mol (337552.8834 without restraints) Performing minimization step: 106. Total energy = 334736.2424 kcal/mol (334323.3579 without restraints) Performing minimization step: 107. Total energy = 331543.8731 kcal/mol (331135.9243 without restraints) Performing minimization step: 108. Total energy = 328392.9590 kcal/mol (327989.8614 without restraints) Performing minimization step: 109. Total energy = 325282.7936 kcal/mol (324884.4648 without restraints) Performing minimization step: 110. Total energy = 322212.6871 kcal/mol (321819.0467 without restraints) Performing minimization step: 111. Total energy = 319181.9659 kcal/mol (318792.9353 without restraints) Performing minimization step: 112. Total energy = 316189.9716 kcal/mol (315805.4740 without restraints) Performing minimization step: 113. Total energy = 313236.0610 kcal/mol (312856.0212 without restraints) Performing minimization step: 114. Total energy = 310319.6054 kcal/mol (309943.9503 without restraints) Performing minimization step: 115. Total energy = 307439.9904 kcal/mol (307068.6481 without restraints) Performing minimization step: 116. Total energy = 304596.6152 kcal/mol (304229.5156 without restraints) Performing minimization step: 117. Total energy = 301788.8923 kcal/mol (301425.9669 without restraints) Performing minimization step: 118. Total energy = 299016.2472 kcal/mol (298657.4289 without restraints) Performing minimization step: 119. Total energy = 296278.1176 kcal/mol (295923.3408 without restraints) Performing minimization step: 120. Total energy = 293573.9532 kcal/mol (293223.1537 without restraints) Performing minimization step: 121. Total energy = 290903.2161 kcal/mol (290556.3309 without restraints) Performing minimization step: 122. Total energy = 288265.3793 kcal/mol (287922.3471 without restraints) Performing minimization step: 123. Total energy = 285659.9274 kcal/mol (285320.6878 without restraints) Performing minimization step: 124. Total energy = 283086.3551 kcal/mol (282750.8492 without restraints) Performing minimization step: 125. Total energy = 280544.1682 kcal/mol (280212.3383 without restraints) Performing minimization step: 126. Total energy = 278032.8822 kcal/mol (277704.6716 without restraints) Performing minimization step: 127. Total energy = 275552.0226 kcal/mol (275227.3760 without restraints) Performing minimization step: 128. Total energy = 273101.1250 kcal/mol (272779.9880 without restraints) Performing minimization step: 129. Total energy = 270679.7342 kcal/mol (270362.0537 without restraints) Performing minimization step: 130. Total energy = 268287.4036 kcal/mol (267973.1275 without restraints) Performing minimization step: 131. Total energy = 265923.6961 kcal/mol (265612.7731 without restraints) Performing minimization step: 132. Total energy = 263588.1829 kcal/mol (263280.5632 without restraints) Performing minimization step: 133. Total energy = 261280.4439 kcal/mol (260976.0781 without restraints) Performing minimization step: 134. Total energy = 259000.0672 kcal/mol (258698.9073 without restraints) Performing minimization step: 135. Total energy = 256746.6479 kcal/mol (256448.6467 without restraints) Performing minimization step: 136. Total energy = 254519.7903 kcal/mol (254224.9014 without restraints) Performing minimization step: 137. Total energy = 252319.1056 kcal/mol (252027.2835 without restraints) Performing minimization step: 138. Total energy = 250144.2125 kcal/mol (249855.4127 without restraints) Performing minimization step: 139. Total energy = 247994.7368 kcal/mol (247708.9156 without restraints) Performing minimization step: 140. Total energy = 245870.3112 kcal/mol (245587.4256 without restraints) Performing minimization step: 141. Total energy = 243770.5758 kcal/mol (243490.5838 without restraints) Performing minimization step: 142. Total energy = 241695.1766 kcal/mol (241418.0367 without restraints) Performing minimization step: 143. Total energy = 239643.7668 kcal/mol (239369.4384 without restraints) Performing minimization step: 144. Total energy = 237616.0061 kcal/mol (237344.4495 without restraints) Performing minimization step: 145. Total energy = 235611.5593 kcal/mol (235342.7354 without restraints) Performing minimization step: 146. Total energy = 233630.0980 kcal/mol (233363.9682 without restraints) Performing minimization step: 147. Total energy = 231671.3001 kcal/mol (231407.8269 without restraints) Performing minimization step: 148. Total energy = 229734.8485 kcal/mol (229473.9948 without restraints) Performing minimization step: 149. Total energy = 227820.4324 kcal/mol (227562.1616 without restraints) Performing minimization step: 150. Total energy = 225927.7454 kcal/mol (225672.0219 without restraints) Performing minimization step: 151. Total energy = 224056.4881 kcal/mol (223803.2768 without restraints) Performing minimization step: 152. Total energy = 222206.3653 kcal/mol (221955.6317 without restraints) Performing minimization step: 153. Total energy = 220377.0872 kcal/mol (220128.7973 without restraints) Performing minimization step: 154. Total energy = 218568.3691 kcal/mol (218322.4898 without restraints) Performing minimization step: 155. Total energy = 216779.9312 kcal/mol (216536.4295 without restraints) Performing minimization step: 156. Total energy = 215011.4978 kcal/mol (214770.3416 without restraints) Performing minimization step: 157. Total energy = 213262.7989 kcal/mol (213023.9566 without restraints) Performing minimization step: 158. Total energy = 211533.5686 kcal/mol (211297.0090 without restraints) Performing minimization step: 159. Total energy = 209823.5461 kcal/mol (209589.2387 without restraints) Performing minimization step: 160. Total energy = 208132.4737 kcal/mol (207900.3885 without restraints) Performing minimization step: 161. Total energy = 206460.0992 kcal/mol (206230.2065 without restraints) Performing minimization step: 162. Total energy = 204806.1737 kcal/mol (204578.4444 without restraints) Performing minimization step: 163. Total energy = 203170.4531 kcal/mol (202944.8587 without restraints) Performing minimization step: 164. Total energy = 201552.6972 kcal/mol (201329.2096 without restraints) Performing minimization step: 165. Total energy = 199952.6696 kcal/mol (199731.2611 without restraints) Performing minimization step: 166. Total energy = 198370.1380 kcal/mol (198150.7813 without restraints) Performing minimization step: 167. Total energy = 196804.8732 kcal/mol (196587.5416 without restraints) Performing minimization step: 168. Total energy = 195256.6502 kcal/mol (195041.3173 without restraints) Performing minimization step: 169. Total energy = 193725.2479 kcal/mol (193511.8879 without restraints) Performing minimization step: 170. Total energy = 192210.4483 kcal/mol (191999.0356 without restraints) Performing minimization step: 171. Total energy = 190712.0372 kcal/mol (190502.5468 without restraints) Performing minimization step: 172. Total energy = 189229.8033 kcal/mol (189022.2104 without restraints) Performing minimization step: 173. Total energy = 187763.5390 kcal/mol (187557.8193 without restraints) Performing minimization step: 174. Total energy = 186313.0397 kcal/mol (186109.1692 without restraints) Performing minimization step: 175. Total energy = 184878.1044 kcal/mol (184676.0597 without restraints) Performing minimization step: 176. Total energy = 183458.5354 kcal/mol (183258.2932 without restraints) Performing minimization step: 177. Total energy = 182054.1377 kcal/mol (181855.6753 without restraints) Performing minimization step: 178. Total energy = 180664.7188 kcal/mol (180468.0135 without restraints) Performing minimization step: 179. Total energy = 179290.0902 kcal/mol (179095.1200 without restraints) Performing minimization step: 180. Total energy = 177930.0652 kcal/mol (177736.8082 without restraints) Performing minimization step: 181. Total energy = 176584.4607 kcal/mol (176392.8956 without restraints) Performing minimization step: 182. Total energy = 175253.0963 kcal/mol (175063.2019 without restraints) Performing minimization step: 183. Total energy = 173935.7944 kcal/mol (173747.5498 without restraints) Performing minimization step: 184. Total energy = 172632.3798 kcal/mol (172445.7646 without restraints) Performing minimization step: 185. Total energy = 171342.6801 kcal/mol (171157.6740 without restraints) Performing minimization step: 186. Total energy = 170066.5258 kcal/mol (169883.1091 without restraints) Performing minimization step: 187. Total energy = 168803.7489 kcal/mol (168621.9019 without restraints) Performing minimization step: 188. Total energy = 167554.1850 kcal/mol (167373.8883 without restraints) Performing minimization step: 189. Total energy = 166317.6716 kcal/mol (166138.9063 without restraints) Performing minimization step: 190. Total energy = 165094.0486 kcal/mol (164916.7960 without restraints) Performing minimization step: 191. Total energy = 163883.1585 kcal/mol (163707.4000 without restraints) Performing minimization step: 192. Total energy = 162684.8460 kcal/mol (162510.5635 without restraints) Performing minimization step: 193. Total energy = 161498.9582 kcal/mol (161326.1336 without restraints) Performing minimization step: 194. Total energy = 160325.3436 kcal/mol (160153.9594 without restraints) Performing minimization step: 195. Total energy = 159163.8542 kcal/mol (158993.8929 without restraints) Performing minimization step: 196. Total energy = 158014.3429 kcal/mol (157845.7874 without restraints) Performing minimization step: 197. Total energy = 156876.6656 kcal/mol (156709.4989 without restraints) Performing minimization step: 198. Total energy = 155750.6799 kcal/mol (155584.8856 without restraints) Performing minimization step: 199. Total energy = 154636.2456 kcal/mol (154471.8069 without restraints) Performing minimization step: 200. Total energy = 153533.2240 kcal/mol (153370.1248 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 201. Total energy = 152441.4793 kcal/mol (152279.7037 without restraints) Performing minimization step: 202. Total energy = 151360.8772 kcal/mol (151200.4093 without restraints) Performing minimization step: 203. Total energy = 150291.2846 kcal/mol (150132.1091 without restraints) Performing minimization step: 204. Total energy = 149232.5707 kcal/mol (149074.6721 without restraints) Performing minimization step: 205. Total energy = 148184.6069 kcal/mol (148027.9702 without restraints) Performing minimization step: 206. Total energy = 147147.2661 kcal/mol (146991.8764 without restraints) Performing minimization step: 207. Total energy = 146120.4233 kcal/mol (145966.2659 without restraints) Performing minimization step: 208. Total energy = 145103.9548 kcal/mol (144951.0152 without restraints) Performing minimization step: 209. Total energy = 144097.7382 kcal/mol (143946.0022 without restraints) Performing minimization step: 210. Total energy = 143101.6541 kcal/mol (142951.1076 without restraints) Performing minimization step: 211. Total energy = 142115.5836 kcal/mol (141966.2126 without restraints) Performing minimization step: 212. Total energy = 141139.4100 kcal/mol (140991.2009 without restraints) Performing minimization step: 213. Total energy = 140173.0184 kcal/mol (140025.9580 without restraints) Performing minimization step: 214. Total energy = 139216.2944 kcal/mol (139070.3687 without restraints) Performing minimization step: 215. Total energy = 138269.1258 kcal/mol (138124.3222 without restraints) Performing minimization step: 216. Total energy = 137331.4024 kcal/mol (137187.7076 without restraints) Performing minimization step: 217. Total energy = 136403.0142 kcal/mol (136260.4156 without restraints) Performing minimization step: 218. Total energy = 135483.8542 kcal/mol (135342.3391 without restraints) Performing minimization step: 219. Total energy = 134573.8160 kcal/mol (134433.3720 without restraints) Performing minimization step: 220. Total energy = 133672.7948 kcal/mol (133533.4095 without restraints) Performing minimization step: 221. Total energy = 132780.6874 kcal/mol (132642.3488 without restraints) Performing minimization step: 222. Total energy = 131897.3910 kcal/mol (131760.0871 without restraints) Performing minimization step: 223. Total energy = 131022.8053 kcal/mol (130886.5243 without restraints) Performing minimization step: 224. Total energy = 130156.8311 kcal/mol (130021.5614 without restraints) Performing minimization step: 225. Total energy = 129299.3699 kcal/mol (129165.1000 without restraints) Performing minimization step: 226. Total energy = 128450.3252 kcal/mol (128317.0437 without restraints) Performing minimization step: 227. Total energy = 127609.6015 kcal/mol (127477.2971 without restraints) Performing minimization step: 228. Total energy = 126777.1048 kcal/mol (126645.7666 without restraints) Performing minimization step: 229. Total energy = 125952.7412 kcal/mol (125822.3583 without restraints) Performing minimization step: 230. Total energy = 125136.4195 kcal/mol (125006.9811 without restraints) Performing minimization step: 231. Total energy = 124328.0493 kcal/mol (124199.5449 without restraints) Performing minimization step: 232. Total energy = 123527.5405 kcal/mol (123399.9594 without restraints) Performing minimization step: 233. Total energy = 122734.8050 kcal/mol (122608.1368 without restraints) Performing minimization step: 234. Total energy = 121949.7556 kcal/mol (121823.9904 without restraints) Performing minimization step: 235. Total energy = 121172.3064 kcal/mol (121047.4338 without restraints) Performing minimization step: 236. Total energy = 120402.3724 kcal/mol (120278.3827 without restraints) Performing minimization step: 237. Total energy = 119639.8698 kcal/mol (119516.7531 without restraints) Performing minimization step: 238. Total energy = 118884.7158 kcal/mol (118762.4623 without restraints) Performing minimization step: 239. Total energy = 118136.8286 kcal/mol (118015.4289 without restraints) Performing minimization step: 240. Total energy = 117396.1276 kcal/mol (117275.5721 without restraints) Performing minimization step: 241. Total energy = 116662.5330 kcal/mol (116542.8124 without restraints) Performing minimization step: 242. Total energy = 115935.9662 kcal/mol (115817.0713 without restraints) Performing minimization step: 243. Total energy = 115216.3495 kcal/mol (115098.2711 without restraints) Performing minimization step: 244. Total energy = 114503.6064 kcal/mol (114386.3357 without restraints) Performing minimization step: 245. Total energy = 113797.6608 kcal/mol (113681.1888 without restraints) Performing minimization step: 246. Total energy = 113098.4381 kcal/mol (112982.7560 without restraints) Performing minimization step: 247. Total energy = 112405.8644 kcal/mol (112290.9636 without restraints) Performing minimization step: 248. Total energy = 111719.8669 kcal/mol (111605.7389 without restraints) Performing minimization step: 249. Total energy = 111040.3737 kcal/mol (110927.0099 without restraints) Performing minimization step: 250. Total energy = 110367.3130 kcal/mol (110254.7051 without restraints) Performing minimization step: 251. Total energy = 109700.6149 kcal/mol (109588.7548 without restraints) Performing minimization step: 252. Total energy = 109040.2100 kcal/mol (108929.0895 without restraints) Performing minimization step: 253. Total energy = 108386.0301 kcal/mol (108275.6412 without restraints) Performing minimization step: 254. Total energy = 107738.0071 kcal/mol (107628.3418 without restraints) Performing minimization step: 255. Total energy = 107096.0743 kcal/mol (106987.1247 without restraints) Performing minimization step: 256. Total energy = 106460.1659 kcal/mol (106351.9245 without restraints) Performing minimization step: 257. Total energy = 105830.2163 kcal/mol (105722.6752 without restraints) Performing minimization step: 258. Total energy = 105206.1612 kcal/mol (105099.3131 without restraints) Performing minimization step: 259. Total energy = 104587.9369 kcal/mol (104481.7743 without restraints) Performing minimization step: 260. Total energy = 103975.4806 kcal/mol (103869.9959 without restraints) Performing minimization step: 261. Total energy = 103368.7298 kcal/mol (103263.9158 without restraints) Performing minimization step: 262. Total energy = 102767.6235 kcal/mol (102663.4731 without restraints) Performing minimization step: 263. Total energy = 102172.1012 kcal/mol (102068.6073 without restraints) Performing minimization step: 264. Total energy = 101582.1032 kcal/mol (101479.2587 without restraints) Performing minimization step: 265. Total energy = 100997.5697 kcal/mol (100895.3676 without restraints) Performing minimization step: 266. Total energy = 100418.4427 kcal/mol (100316.8764 without restraints) Performing minimization step: 267. Total energy = 99844.6645 kcal/mol (99743.7272 without restraints) Performing minimization step: 268. Total energy = 99276.1777 kcal/mol (99175.8625 without restraints) Performing minimization step: 269. Total energy = 98712.9259 kcal/mol (98613.2263 without restraints) Performing minimization step: 270. Total energy = 98154.8536 kcal/mol (98055.7631 without restraints) Performing minimization step: 271. Total energy = 97601.9057 kcal/mol (97503.4178 without restraints) Performing minimization step: 272. Total energy = 97054.0281 kcal/mol (96956.1365 without restraints) Performing minimization step: 273. Total energy = 96511.1662 kcal/mol (96413.8646 without restraints) Performing minimization step: 274. Total energy = 95973.2676 kcal/mol (95876.5497 without restraints) Performing minimization step: 275. Total energy = 95440.2798 kcal/mol (95344.1395 without restraints) Performing minimization step: 276. Total energy = 94912.1507 kcal/mol (94816.5819 without restraints) Performing minimization step: 277. Total energy = 94388.8292 kcal/mol (94293.8259 without restraints) Performing minimization step: 278. Total energy = 93870.2646 kcal/mol (93775.8209 without restraints) Performing minimization step: 279. Total energy = 93356.4068 kcal/mol (93262.5168 without restraints) Performing minimization step: 280. Total energy = 92847.2066 kcal/mol (92753.8645 without restraints) Performing minimization step: 281. Total energy = 92342.6145 kcal/mol (92249.8147 without restraints) Performing minimization step: 282. Total energy = 91842.5828 kcal/mol (91750.3195 without restraints) Performing minimization step: 283. Total energy = 91347.0640 kcal/mol (91255.3318 without restraints) Performing minimization step: 284. Total energy = 90856.0099 kcal/mol (90764.8029 without restraints) Performing minimization step: 285. Total energy = 90369.3742 kcal/mol (90278.6872 without restraints) Performing minimization step: 286. Total energy = 89887.1109 kcal/mol (89796.9384 without restraints) Performing minimization step: 287. Total energy = 89409.1744 kcal/mol (89319.5111 without restraints) Performing minimization step: 288. Total energy = 88935.5197 kcal/mol (88846.3602 without restraints) Performing minimization step: 289. Total energy = 88466.1022 kcal/mol (88377.4415 without restraints) Performing minimization step: 290. Total energy = 88000.8777 kcal/mol (87912.7105 without restraints) Performing minimization step: 291. Total energy = 87539.8031 kcal/mol (87452.1243 without restraints) Performing minimization step: 292. Total energy = 87082.8352 kcal/mol (86995.6399 without restraints) Performing minimization step: 293. Total energy = 86629.9316 kcal/mol (86543.2148 without restraints) Performing minimization step: 294. Total energy = 86181.0500 kcal/mol (86094.8067 without restraints) Performing minimization step: 295. Total energy = 85736.1493 kcal/mol (85650.3746 without restraints) Performing minimization step: 296. Total energy = 85295.1878 kcal/mol (85209.8769 without restraints) Performing minimization step: 297. Total energy = 84858.1250 kcal/mol (84773.2733 without restraints) Performing minimization step: 298. Total energy = 84424.9214 kcal/mol (84340.5240 without restraints) Performing minimization step: 299. Total energy = 83995.5366 kcal/mol (83911.5889 without restraints) Performing minimization step: 300. Total energy = 83569.9314 kcal/mol (83486.4288 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 301. Total energy = 83148.0675 kcal/mol (83065.0055 without restraints) Performing minimization step: 302. Total energy = 82729.9062 kcal/mol (82647.2805 without restraints) Performing minimization step: 303. Total energy = 82315.4096 kcal/mol (82233.2155 without restraints) Performing minimization step: 304. Total energy = 81904.5403 kcal/mol (81822.7734 without restraints) Performing minimization step: 305. Total energy = 81497.2611 kcal/mol (81415.9172 without restraints) Performing minimization step: 306. Total energy = 81093.5353 kcal/mol (81012.6101 without restraints) Performing minimization step: 307. Total energy = 80693.3270 kcal/mol (80612.8162 without restraints) Performing minimization step: 308. Total energy = 80296.6001 kcal/mol (80216.4995 without restraints) Performing minimization step: 309. Total energy = 79903.3190 kcal/mol (79823.6245 without restraints) Performing minimization step: 310. Total energy = 79513.4494 kcal/mol (79434.1569 without restraints) Performing minimization step: 311. Total energy = 79126.9556 kcal/mol (79048.0610 without restraints) Performing minimization step: 312. Total energy = 78743.8038 kcal/mol (78665.3031 without restraints) Performing minimization step: 313. Total energy = 78363.9602 kcal/mol (78285.8494 without restraints) Performing minimization step: 314. Total energy = 77987.3913 kcal/mol (77909.6666 without restraints) Performing minimization step: 315. Total energy = 77614.0641 kcal/mol (77536.7214 without restraints) Performing minimization step: 316. Total energy = 77243.9457 kcal/mol (77166.9815 without restraints) Performing minimization step: 317. Total energy = 76877.0034 kcal/mol (76800.4136 without restraints) Performing minimization step: 318. Total energy = 76513.2052 kcal/mol (76436.9862 without restraints) Performing minimization step: 319. Total energy = 76152.5199 kcal/mol (76076.6679 without restraints) Performing minimization step: 320. Total energy = 75794.9156 kcal/mol (75719.4270 without restraints) Performing minimization step: 321. Total energy = 75440.3618 kcal/mol (75365.2330 without restraints) Performing minimization step: 322. Total energy = 75088.8276 kcal/mol (75014.0551 without restraints) Performing minimization step: 323. Total energy = 74740.2829 kcal/mol (74665.8630 without restraints) Performing minimization step: 324. Total energy = 74394.6973 kcal/mol (74320.6265 without restraints) Performing minimization step: 325. Total energy = 74052.0411 kcal/mol (73978.3160 without restraints) Performing minimization step: 326. Total energy = 73712.2855 kcal/mol (73638.9026 without restraints) Performing minimization step: 327. Total energy = 73375.4011 kcal/mol (73302.3571 without restraints) Performing minimization step: 328. Total energy = 73041.3597 kcal/mol (72968.6511 without restraints) Performing minimization step: 329. Total energy = 72710.1320 kcal/mol (72637.7556 without restraints) Performing minimization step: 330. Total energy = 72381.6907 kcal/mol (72309.6433 without restraints) Performing minimization step: 331. Total energy = 72056.0079 kcal/mol (71984.2861 without restraints) Performing minimization step: 332. Total energy = 71733.0561 kcal/mol (71661.6567 without restraints) Performing minimization step: 333. Total energy = 71412.8081 kcal/mol (71341.7280 without restraints) Performing minimization step: 334. Total energy = 71095.2366 kcal/mol (71024.4726 without restraints) Performing minimization step: 335. Total energy = 70780.3159 kcal/mol (70709.8649 without restraints) Performing minimization step: 336. Total energy = 70468.0196 kcal/mol (70397.8788 without restraints) Performing minimization step: 337. Total energy = 70158.3213 kcal/mol (70088.4871 without restraints) Performing minimization step: 338. Total energy = 69851.1950 kcal/mol (69781.6648 without restraints) Performing minimization step: 339. Total energy = 69546.6156 kcal/mol (69477.3863 without restraints) Performing minimization step: 340. Total energy = 69244.5580 kcal/mol (69175.6267 without restraints) Performing minimization step: 341. Total energy = 68944.9976 kcal/mol (68876.3615 without restraints) Performing minimization step: 342. Total energy = 68647.9091 kcal/mol (68579.5651 without restraints) Performing minimization step: 343. Total energy = 68353.2681 kcal/mol (68285.2134 without restraints) Performing minimization step: 344. Total energy = 68061.0510 kcal/mol (67993.2829 without restraints) Performing minimization step: 345. Total energy = 67771.2335 kcal/mol (67703.7492 without restraints) Performing minimization step: 346. Total energy = 67483.7923 kcal/mol (67416.5889 without restraints) Performing minimization step: 347. Total energy = 67198.7044 kcal/mol (67131.7794 without restraints) Performing minimization step: 348. Total energy = 66915.9465 kcal/mol (66849.2972 without restraints) Performing minimization step: 349. Total energy = 66635.4953 kcal/mol (66569.1187 without restraints) Performing minimization step: 350. Total energy = 66357.3287 kcal/mol (66291.2225 without restraints) Performing minimization step: 351. Total energy = 66081.4239 kcal/mol (66015.5853 without restraints) Performing minimization step: 352. Total energy = 65807.7591 kcal/mol (65742.1856 without restraints) Performing minimization step: 353. Total energy = 65536.3121 kcal/mol (65471.0011 without restraints) Performing minimization step: 354. Total energy = 65267.0616 kcal/mol (65202.0107 without restraints) Performing minimization step: 355. Total energy = 64999.9859 kcal/mol (64935.1924 without restraints) Performing minimization step: 356. Total energy = 64735.0640 kcal/mol (64670.5256 without restraints) Performing minimization step: 357. Total energy = 64472.2748 kcal/mol (64407.9889 without restraints) Performing minimization step: 358. Total energy = 64211.5974 kcal/mol (64147.5617 without restraints) Performing minimization step: 359. Total energy = 63953.0115 kcal/mol (63889.2236 without restraints) Performing minimization step: 360. Total energy = 63696.4966 kcal/mol (63632.9542 without restraints) Performing minimization step: 361. Total energy = 63442.0326 kcal/mol (63378.7331 without restraints) Performing minimization step: 362. Total energy = 63189.5998 kcal/mol (63126.5411 without restraints) Performing minimization step: 363. Total energy = 62939.1784 kcal/mol (62876.3581 without restraints) Performing minimization step: 364. Total energy = 62690.7496 kcal/mol (62628.1654 without restraints) Performing minimization step: 365. Total energy = 62444.2919 kcal/mol (62381.9418 without restraints) Performing minimization step: 366. Total energy = 62199.7887 kcal/mol (62137.6703 without restraints) Performing minimization step: 367. Total energy = 61957.2204 kcal/mol (61895.3315 without restraints) Performing minimization step: 368. Total energy = 61716.5678 kcal/mol (61654.9062 without restraints) Performing minimization step: 369. Total energy = 61477.8131 kcal/mol (61416.3767 without restraints) Performing minimization step: 370. Total energy = 61240.9378 kcal/mol (61179.7244 without restraints) Performing minimization step: 371. Total energy = 61005.9233 kcal/mol (60944.9309 without restraints) Performing minimization step: 372. Total energy = 60772.7519 kcal/mol (60711.9783 without restraints) Performing minimization step: 373. Total energy = 60541.4060 kcal/mol (60480.8493 without restraints) Performing minimization step: 374. Total energy = 60311.8683 kcal/mol (60251.5263 without restraints) Performing minimization step: 375. Total energy = 60084.1213 kcal/mol (60023.9920 without restraints) Performing minimization step: 376. Total energy = 59858.1475 kcal/mol (59798.2289 without restraints) Performing minimization step: 377. Total energy = 59633.9302 kcal/mol (59574.2206 without restraints) Performing minimization step: 378. Total energy = 59411.4528 kcal/mol (59351.9499 without restraints) Performing minimization step: 379. Total energy = 59190.6981 kcal/mol (59131.4000 without restraints) Performing minimization step: 380. Total energy = 58971.6501 kcal/mol (58912.5550 without restraints) Performing minimization step: 381. Total energy = 58754.2919 kcal/mol (58695.3978 without restraints) Performing minimization step: 382. Total energy = 58538.6079 kcal/mol (58479.9129 without restraints) Performing minimization step: 383. Total energy = 58324.5818 kcal/mol (58266.0842 without restraints) Performing minimization step: 384. Total energy = 58112.1981 kcal/mol (58053.8959 without restraints) Performing minimization step: 385. Total energy = 57901.4410 kcal/mol (57843.3325 without restraints) Performing minimization step: 386. Total energy = 57692.2950 kcal/mol (57634.3783 without restraints) Performing minimization step: 387. Total energy = 57484.7451 kcal/mol (57427.0186 without restraints) Performing minimization step: 388. Total energy = 57278.7756 kcal/mol (57221.2373 without restraints) Performing minimization step: 389. Total energy = 57074.3714 kcal/mol (57017.0197 without restraints) Performing minimization step: 390. Total energy = 56871.5182 kcal/mol (56814.3514 without restraints) Performing minimization step: 391. Total energy = 56670.2009 kcal/mol (56613.2172 without restraints) Performing minimization step: 392. Total energy = 56470.4055 kcal/mol (56413.6033 without restraints) Performing minimization step: 393. Total energy = 56272.1170 kcal/mol (56215.4945 without restraints) Performing minimization step: 394. Total energy = 56075.3212 kcal/mol (56018.8769 without restraints) Performing minimization step: 395. Total energy = 55880.0043 kcal/mol (55823.7364 without restraints) Performing minimization step: 396. Total energy = 55686.1524 kcal/mol (55630.0595 without restraints) Performing minimization step: 397. Total energy = 55493.7514 kcal/mol (55437.8317 without restraints) Performing minimization step: 398. Total energy = 55302.7876 kcal/mol (55247.0396 without restraints) Performing minimization step: 399. Total energy = 55113.2470 kcal/mol (55057.6691 without restraints) Performing minimization step: 400. Total energy = 54925.1169 kcal/mol (54869.7075 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 401. Total energy = 54738.3838 kcal/mol (54683.1414 without restraints) Performing minimization step: 402. Total energy = 54553.0342 kcal/mol (54497.9573 without restraints) Performing minimization step: 403. Total energy = 54369.0560 kcal/mol (54314.1431 without restraints) Performing minimization step: 404. Total energy = 54186.4353 kcal/mol (54131.6849 without restraints) Performing minimization step: 405. Total energy = 54005.1600 kcal/mol (53950.5707 without restraints) Performing minimization step: 406. Total energy = 53825.2170 kcal/mol (53770.7871 without restraints) Performing minimization step: 407. Total energy = 53646.5943 kcal/mol (53592.3227 without restraints) Performing minimization step: 408. Total energy = 53469.2796 kcal/mol (53415.1646 without restraints) Performing minimization step: 409. Total energy = 53293.2603 kcal/mol (53239.3006 without restraints) Performing minimization step: 410. Total energy = 53118.5247 kcal/mol (53064.7189 without restraints) Performing minimization step: 411. Total energy = 52945.0602 kcal/mol (52891.4068 without restraints) Performing minimization step: 412. Total energy = 52772.8557 kcal/mol (52719.3536 without restraints) Performing minimization step: 413. Total energy = 52601.8986 kcal/mol (52548.5461 without restraints) Performing minimization step: 414. Total energy = 52432.1776 kcal/mol (52378.9733 without restraints) Performing minimization step: 415. Total energy = 52263.6821 kcal/mol (52210.6251 without restraints) Performing minimization step: 416. Total energy = 52096.3992 kcal/mol (52043.4879 without restraints) Performing minimization step: 417. Total energy = 51930.3184 kcal/mol (51877.5516 without restraints) Performing minimization step: 418. Total energy = 51765.4282 kcal/mol (51712.8045 without restraints) Performing minimization step: 419. Total energy = 51601.7184 kcal/mol (51549.2367 without restraints) Performing minimization step: 420. Total energy = 51439.1770 kcal/mol (51386.8360 without restraints) Performing minimization step: 421. Total energy = 51277.7935 kcal/mol (51225.5918 without restraints) Performing minimization step: 422. Total energy = 51117.5573 kcal/mol (51065.4937 without restraints) Performing minimization step: 423. Total energy = 50958.4573 kcal/mol (50906.5306 without restraints) Performing minimization step: 424. Total energy = 50800.4838 kcal/mol (50748.6927 without restraints) Performing minimization step: 425. Total energy = 50643.6254 kcal/mol (50591.9689 without restraints) Performing minimization step: 426. Total energy = 50487.8725 kcal/mol (50436.3493 without restraints) Performing minimization step: 427. Total energy = 50333.2146 kcal/mol (50281.8236 without restraints) Performing minimization step: 428. Total energy = 50179.6419 kcal/mol (50128.3818 without restraints) Performing minimization step: 429. Total energy = 50027.1441 kcal/mol (49976.0138 without restraints) Performing minimization step: 430. Total energy = 49875.7114 kcal/mol (49824.7099 without restraints) Performing minimization step: 431. Total energy = 49725.3341 kcal/mol (49674.4600 without restraints) Performing minimization step: 432. Total energy = 49576.0022 kcal/mol (49525.2546 without restraints) Performing minimization step: 433. Total energy = 49427.7066 kcal/mol (49377.0844 without restraints) Performing minimization step: 434. Total energy = 49280.4372 kcal/mol (49229.9391 without restraints) Performing minimization step: 435. Total energy = 49134.1853 kcal/mol (49083.8104 without restraints) Performing minimization step: 436. Total energy = 48988.9412 kcal/mol (48938.6884 without restraints) Performing minimization step: 437. Total energy = 48844.6954 kcal/mol (48794.5636 without restraints) Performing minimization step: 438. Total energy = 48701.4385 kcal/mol (48651.4267 without restraints) Performing minimization step: 439. Total energy = 48559.1623 kcal/mol (48509.2694 without restraints) Performing minimization step: 440. Total energy = 48417.8571 kcal/mol (48368.0822 without restraints) Performing minimization step: 441. Total energy = 48277.5142 kcal/mol (48227.8561 without restraints) Performing minimization step: 442. Total energy = 48138.1253 kcal/mol (48088.5831 without restraints) Performing minimization step: 443. Total energy = 47999.6809 kcal/mol (47950.2536 without restraints) Performing minimization step: 444. Total energy = 47862.1731 kcal/mol (47812.8597 without restraints) Performing minimization step: 445. Total energy = 47725.5933 kcal/mol (47676.3928 without restraints) Performing minimization step: 446. Total energy = 47589.9329 kcal/mol (47540.8443 without restraints) Performing minimization step: 447. Total energy = 47455.1830 kcal/mol (47406.2055 without restraints) Performing minimization step: 448. Total energy = 47321.3361 kcal/mol (47272.4686 without restraints) Performing minimization step: 449. Total energy = 47188.3837 kcal/mol (47139.6253 without restraints) Performing minimization step: 450. Total energy = 47056.3180 kcal/mol (47007.6677 without restraints) Performing minimization step: 451. Total energy = 46925.1303 kcal/mol (46876.5873 without restraints) Performing minimization step: 452. Total energy = 46794.8132 kcal/mol (46746.3766 without restraints) Performing minimization step: 453. Total energy = 46665.3585 kcal/mol (46617.0273 without restraints) Performing minimization step: 454. Total energy = 46536.7584 kcal/mol (46488.5317 without restraints) Performing minimization step: 455. Total energy = 46409.0056 kcal/mol (46360.8826 without restraints) Performing minimization step: 456. Total energy = 46282.0918 kcal/mol (46234.0716 without restraints) Performing minimization step: 457. Total energy = 46156.0098 kcal/mol (46108.0917 without restraints) Performing minimization step: 458. Total energy = 46030.7522 kcal/mol (45982.9350 without restraints) Performing minimization step: 459. Total energy = 45906.3113 kcal/mol (45858.5943 without restraints) Performing minimization step: 460. Total energy = 45782.6800 kcal/mol (45735.0624 without restraints) Performing minimization step: 461. Total energy = 45659.8511 kcal/mol (45612.3321 without restraints) Performing minimization step: 462. Total energy = 45537.8169 kcal/mol (45490.3957 without restraints) Performing minimization step: 463. Total energy = 45416.5704 kcal/mol (45369.2461 without restraints) Performing minimization step: 464. Total energy = 45296.1046 kcal/mol (45248.8764 without restraints) Performing minimization step: 465. Total energy = 45176.4124 kcal/mol (45129.2795 without restraints) Performing minimization step: 466. Total energy = 45057.4871 kcal/mol (45010.4487 without restraints) Performing minimization step: 467. Total energy = 44939.3221 kcal/mol (44892.3775 without restraints) Performing minimization step: 468. Total energy = 44821.9106 kcal/mol (44775.0590 without restraints) Performing minimization step: 469. Total energy = 44705.2445 kcal/mol (44658.4850 without restraints) Performing minimization step: 470. Total energy = 44589.3187 kcal/mol (44542.6507 without restraints) Performing minimization step: 471. Total energy = 44474.1258 kcal/mol (44427.5486 without restraints) Performing minimization step: 472. Total energy = 44359.6594 kcal/mol (44313.1721 without restraints) Performing minimization step: 473. Total energy = 44245.9130 kcal/mol (44199.5150 without restraints) Performing minimization step: 474. Total energy = 44132.8808 kcal/mol (44086.5712 without restraints) Performing minimization step: 475. Total energy = 44020.5560 kcal/mol (43974.3345 without restraints) Performing minimization step: 476. Total energy = 43908.9325 kcal/mol (43862.7979 without restraints) Performing minimization step: 477. Total energy = 43798.0032 kcal/mol (43751.9550 without restraints) Performing minimization step: 478. Total energy = 43687.7628 kcal/mol (43641.8003 without restraints) Performing minimization step: 479. Total energy = 43578.2053 kcal/mol (43532.3278 without restraints) Performing minimization step: 480. Total energy = 43469.3242 kcal/mol (43423.5310 without restraints) Performing minimization step: 481. Total energy = 43361.1137 kcal/mol (43315.4041 without restraints) Performing minimization step: 482. Total energy = 43253.5678 kcal/mol (43207.9409 without restraints) Performing minimization step: 483. Total energy = 43146.6807 kcal/mol (43101.1363 without restraints) Performing minimization step: 484. Total energy = 43040.4461 kcal/mol (42994.9835 without restraints) Performing minimization step: 485. Total energy = 42934.8590 kcal/mol (42889.4772 without restraints) Performing minimization step: 486. Total energy = 42829.9127 kcal/mol (42784.6114 without restraints) Performing minimization step: 487. Total energy = 42725.6025 kcal/mol (42680.3809 without restraints) Performing minimization step: 488. Total energy = 42621.9230 kcal/mol (42576.7804 without restraints) Performing minimization step: 489. Total energy = 42518.8679 kcal/mol (42473.8038 without restraints) Performing minimization step: 490. Total energy = 42416.4321 kcal/mol (42371.4459 without restraints) Performing minimization step: 491. Total energy = 42314.6099 kcal/mol (42269.7008 without restraints) Performing minimization step: 492. Total energy = 42213.3963 kcal/mol (42168.5640 without restraints) Performing minimization step: 493. Total energy = 42112.7855 kcal/mol (42068.0292 without restraints) Performing minimization step: 494. Total energy = 42012.7729 kcal/mol (41968.0920 without restraints) Performing minimization step: 495. Total energy = 41913.3526 kcal/mol (41868.7465 without restraints) Performing minimization step: 496. Total energy = 41814.5197 kcal/mol (41769.9880 without restraints) Performing minimization step: 497. Total energy = 41716.2694 kcal/mol (41671.8113 without restraints) Performing minimization step: 498. Total energy = 41618.5962 kcal/mol (41574.2114 without restraints) Performing minimization step: 499. Total energy = 41521.4952 kcal/mol (41477.1829 without restraints) Performing minimization step: 500. Total energy = 41424.9610 kcal/mol (41380.7206 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 501. Total energy = 41328.9894 kcal/mol (41284.8205 without restraints) Performing minimization step: 502. Total energy = 41233.5752 kcal/mol (41189.4773 without restraints) Performing minimization step: 503. Total energy = 41138.7134 kcal/mol (41094.6857 without restraints) Performing minimization step: 504. Total energy = 41044.3994 kcal/mol (41000.4416 without restraints) Performing minimization step: 505. Total energy = 40950.6289 kcal/mol (40906.7405 without restraints) Performing minimization step: 506. Total energy = 40857.3961 kcal/mol (40813.5764 without restraints) Performing minimization step: 507. Total energy = 40764.6969 kcal/mol (40720.9455 without restraints) Performing minimization step: 508. Total energy = 40672.5268 kcal/mol (40628.8431 without restraints) Performing minimization step: 509. Total energy = 40580.8812 kcal/mol (40537.2648 without restraints) Performing minimization step: 510. Total energy = 40489.7559 kcal/mol (40446.2062 without restraints) Performing minimization step: 511. Total energy = 40399.1453 kcal/mol (40355.6619 without restraints) Performing minimization step: 512. Total energy = 40309.0460 kcal/mol (40265.6283 without restraints) Performing minimization step: 513. Total energy = 40219.4536 kcal/mol (40176.1012 without restraints) Performing minimization step: 514. Total energy = 40130.3635 kcal/mol (40087.0759 without restraints) Performing minimization step: 515. Total energy = 40041.7715 kcal/mol (39998.5482 without restraints) Performing minimization step: 516. Total energy = 39953.6732 kcal/mol (39910.5137 without restraints) Performing minimization step: 517. Total energy = 39866.0645 kcal/mol (39822.9684 without restraints) Performing minimization step: 518. Total energy = 39778.9410 kcal/mol (39735.9079 without restraints) Performing minimization step: 519. Total energy = 39692.2988 kcal/mol (39649.3280 without restraints) Performing minimization step: 520. Total energy = 39606.1338 kcal/mol (39563.2250 without restraints) Performing minimization step: 521. Total energy = 39520.4422 kcal/mol (39477.5949 without restraints) Performing minimization step: 522. Total energy = 39435.2191 kcal/mol (39392.4330 without restraints) Performing minimization step: 523. Total energy = 39350.4613 kcal/mol (39307.7358 without restraints) Performing minimization step: 524. Total energy = 39266.1645 kcal/mol (39223.4992 without restraints) Performing minimization step: 525. Total energy = 39182.3248 kcal/mol (39139.7193 without restraints) Performing minimization step: 526. Total energy = 39098.9387 kcal/mol (39056.3927 without restraints) Performing minimization step: 527. Total energy = 39016.0019 kcal/mol (38973.5145 without restraints) Performing minimization step: 528. Total energy = 38933.5106 kcal/mol (38891.0820 without restraints) Performing minimization step: 529. Total energy = 38851.4614 kcal/mol (38809.0909 without restraints) Performing minimization step: 530. Total energy = 38769.8505 kcal/mol (38727.5378 without restraints) Performing minimization step: 531. Total energy = 38688.6743 kcal/mol (38646.4188 without restraints) Performing minimization step: 532. Total energy = 38607.9286 kcal/mol (38565.7300 without restraints) Performing minimization step: 533. Total energy = 38527.6102 kcal/mol (38485.4681 without restraints) Performing minimization step: 534. Total energy = 38447.7152 kcal/mol (38405.6292 without restraints) Performing minimization step: 535. Total energy = 38368.2406 kcal/mol (38326.2103 without restraints) Performing minimization step: 536. Total energy = 38289.1826 kcal/mol (38247.2076 without restraints) Performing minimization step: 537. Total energy = 38210.5376 kcal/mol (38168.6176 without restraints) Performing minimization step: 538. Total energy = 38132.3021 kcal/mol (38090.4367 without restraints) Performing minimization step: 539. Total energy = 38054.4732 kcal/mol (38012.6619 without restraints) Performing minimization step: 540. Total energy = 37977.0468 kcal/mol (37935.2894 without restraints) Performing minimization step: 541. Total energy = 37900.0201 kcal/mol (37858.3161 without restraints) Performing minimization step: 542. Total energy = 37823.3890 kcal/mol (37781.7380 without restraints) Performing minimization step: 543. Total energy = 37747.1511 kcal/mol (37705.5530 without restraints) Performing minimization step: 544. Total energy = 37671.3027 kcal/mol (37629.7570 without restraints) Performing minimization step: 545. Total energy = 37595.8412 kcal/mol (37554.3475 without restraints) Performing minimization step: 546. Total energy = 37520.7627 kcal/mol (37479.3207 without restraints) Performing minimization step: 547. Total energy = 37446.0642 kcal/mol (37404.6735 without restraints) Performing minimization step: 548. Total energy = 37371.7425 kcal/mol (37330.4029 without restraints) Performing minimization step: 549. Total energy = 37297.7941 kcal/mol (37256.5051 without restraints) Performing minimization step: 550. Total energy = 37224.2169 kcal/mol (37182.9783 without restraints) Performing minimization step: 551. Total energy = 37151.0073 kcal/mol (37109.8186 without restraints) Performing minimization step: 552. Total energy = 37078.1625 kcal/mol (37037.0236 without restraints) Performing minimization step: 553. Total energy = 37005.6794 kcal/mol (36964.5898 without restraints) Performing minimization step: 554. Total energy = 36933.5550 kcal/mol (36892.5146 without restraints) Performing minimization step: 555. Total energy = 36861.7861 kcal/mol (36820.7943 without restraints) Performing minimization step: 556. Total energy = 36790.3708 kcal/mol (36749.4274 without restraints) Performing minimization step: 557. Total energy = 36719.3052 kcal/mol (36678.4099 without restraints) Performing minimization step: 558. Total energy = 36648.5867 kcal/mol (36607.7391 without restraints) Performing minimization step: 559. Total energy = 36578.2125 kcal/mol (36537.4126 without restraints) Performing minimization step: 560. Total energy = 36508.1800 kcal/mol (36467.4271 without restraints) Performing minimization step: 561. Total energy = 36438.4862 kcal/mol (36397.7802 without restraints) Performing minimization step: 562. Total energy = 36369.1279 kcal/mol (36328.4685 without restraints) Performing minimization step: 563. Total energy = 36300.1032 kcal/mol (36259.4901 without restraints) Performing minimization step: 564. Total energy = 36231.4092 kcal/mol (36190.8421 without restraints) Performing minimization step: 565. Total energy = 36163.0433 kcal/mol (36122.5220 without restraints) Performing minimization step: 566. Total energy = 36095.0025 kcal/mol (36054.5266 without restraints) Performing minimization step: 567. Total energy = 36027.2844 kcal/mol (35986.8537 without restraints) Performing minimization step: 568. Total energy = 35959.8864 kcal/mol (35919.5006 without restraints) Performing minimization step: 569. Total energy = 35892.8059 kcal/mol (35852.4647 without restraints) Performing minimization step: 570. Total energy = 35826.0405 kcal/mol (35785.7436 without restraints) Performing minimization step: 571. Total energy = 35759.5871 kcal/mol (35719.3343 without restraints) Performing minimization step: 572. Total energy = 35693.4441 kcal/mol (35653.2351 without restraints) Performing minimization step: 573. Total energy = 35627.6090 kcal/mol (35587.4434 without restraints) Performing minimization step: 574. Total energy = 35562.0789 kcal/mol (35521.9567 without restraints) Performing minimization step: 575. Total energy = 35496.8511 kcal/mol (35456.7719 without restraints) Performing minimization step: 576. Total energy = 35431.9237 kcal/mol (35391.8872 without restraints) Performing minimization step: 577. Total energy = 35367.2939 kcal/mol (35327.3000 without restraints) Performing minimization step: 578. Total energy = 35302.9597 kcal/mol (35263.0081 without restraints) Performing minimization step: 579. Total energy = 35238.9189 kcal/mol (35199.0094 without restraints) Performing minimization step: 580. Total energy = 35175.1688 kcal/mol (35135.3010 without restraints) Performing minimization step: 581. Total energy = 35111.7072 kcal/mol (35071.8808 without restraints) Performing minimization step: 582. Total energy = 35048.5329 kcal/mol (35008.7479 without restraints) Performing minimization step: 583. Total energy = 34985.6420 kcal/mol (34945.8981 without restraints) Performing minimization step: 584. Total energy = 34923.0327 kcal/mol (34883.3295 without restraints) Performing minimization step: 585. Total energy = 34860.7030 kcal/mol (34821.0405 without restraints) Performing minimization step: 586. Total energy = 34798.6508 kcal/mol (34759.0287 without restraints) Performing minimization step: 587. Total energy = 34736.8736 kcal/mol (34697.2915 without restraints) Performing minimization step: 588. Total energy = 34675.3698 kcal/mol (34635.8277 without restraints) Performing minimization step: 589. Total energy = 34614.1372 kcal/mol (34574.6348 without restraints) Performing minimization step: 590. Total energy = 34553.1736 kcal/mol (34513.7107 without restraints) Performing minimization step: 591. Total energy = 34492.4768 kcal/mol (34453.0530 without restraints) Performing minimization step: 592. Total energy = 34432.0447 kcal/mol (34392.6600 without restraints) Performing minimization step: 593. Total energy = 34371.8754 kcal/mol (34332.5295 without restraints) Performing minimization step: 594. Total energy = 34311.9667 kcal/mol (34272.6595 without restraints) Performing minimization step: 595. Total energy = 34252.3168 kcal/mol (34213.0479 without restraints) Performing minimization step: 596. Total energy = 34192.9235 kcal/mol (34153.6928 without restraints) Performing minimization step: 597. Total energy = 34133.7851 kcal/mol (34094.5923 without restraints) Performing minimization step: 598. Total energy = 34074.8991 kcal/mol (34035.7441 without restraints) Performing minimization step: 599. Total energy = 34016.2640 kcal/mol (33977.1465 without restraints) Performing minimization step: 600. Total energy = 33957.8780 kcal/mol (33918.7979 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 601. Total energy = 33899.7391 kcal/mol (33860.6962 without restraints) Performing minimization step: 602. Total energy = 33841.8455 kcal/mol (33802.8397 without restraints) Performing minimization step: 603. Total energy = 33784.1954 kcal/mol (33745.2263 without restraints) Performing minimization step: 604. Total energy = 33726.7865 kcal/mol (33687.8540 without restraints) Performing minimization step: 605. Total energy = 33669.6178 kcal/mol (33630.7219 without restraints) Performing minimization step: 606. Total energy = 33612.6866 kcal/mol (33573.8268 without restraints) Performing minimization step: 607. Total energy = 33555.9918 kcal/mol (33517.1680 without restraints) Performing minimization step: 608. Total energy = 33499.5311 kcal/mol (33460.7431 without restraints) Performing minimization step: 609. Total energy = 33443.3030 kcal/mol (33404.5507 without restraints) Performing minimization step: 610. Total energy = 33387.3062 kcal/mol (33348.5895 without restraints) Performing minimization step: 611. Total energy = 33331.5382 kcal/mol (33292.8567 without restraints) Performing minimization step: 612. Total energy = 33275.9972 kcal/mol (33237.3509 without restraints) Performing minimization step: 613. Total energy = 33220.6821 kcal/mol (33182.0707 without restraints) Performing minimization step: 614. Total energy = 33165.5911 kcal/mol (33127.0144 without restraints) Performing minimization step: 615. Total energy = 33110.7219 kcal/mol (33072.1799 without restraints) Performing minimization step: 616. Total energy = 33056.0737 kcal/mol (33017.5662 without restraints) Performing minimization step: 617. Total energy = 33001.6450 kcal/mol (32963.1718 without restraints) Performing minimization step: 618. Total energy = 32947.4332 kcal/mol (32908.9940 without restraints) Performing minimization step: 619. Total energy = 32893.4376 kcal/mol (32855.0324 without restraints) Performing minimization step: 620. Total energy = 32839.6560 kcal/mol (32801.2844 without restraints) Performing minimization step: 621. Total energy = 32786.0874 kcal/mol (32747.7497 without restraints) Performing minimization step: 622. Total energy = 32732.7298 kcal/mol (32694.4255 without restraints) Performing minimization step: 623. Total energy = 32679.5818 kcal/mol (32641.3108 without restraints) Performing minimization step: 624. Total energy = 32626.6418 kcal/mol (32588.4039 without restraints) Performing minimization step: 625. Total energy = 32573.9087 kcal/mol (32535.7038 without restraints) Performing minimization step: 626. Total energy = 32521.3806 kcal/mol (32483.2085 without restraints) Performing minimization step: 627. Total energy = 32469.0556 kcal/mol (32430.9162 without restraints) Performing minimization step: 628. Total energy = 32416.9335 kcal/mol (32378.8267 without restraints) Performing minimization step: 629. Total energy = 32365.0116 kcal/mol (32326.9371 without restraints) Performing minimization step: 630. Total energy = 32313.2888 kcal/mol (32275.2466 without restraints) Performing minimization step: 631. Total energy = 32261.7636 kcal/mol (32223.7535 without restraints) Performing minimization step: 632. Total energy = 32210.4350 kcal/mol (32172.4569 without restraints) Performing minimization step: 633. Total energy = 32159.3013 kcal/mol (32121.3549 without restraints) Performing minimization step: 634. Total energy = 32108.3612 kcal/mol (32070.4466 without restraints) Performing minimization step: 635. Total energy = 32057.6135 kcal/mol (32019.7304 without restraints) Performing minimization step: 636. Total energy = 32007.0566 kcal/mol (31969.2049 without restraints) Performing minimization step: 637. Total energy = 31956.6889 kcal/mol (31918.8684 without restraints) Performing minimization step: 638. Total energy = 31906.5096 kcal/mol (31868.7203 without restraints) Performing minimization step: 639. Total energy = 31856.5171 kcal/mol (31818.7586 without restraints) Performing minimization step: 640. Total energy = 31806.7102 kcal/mol (31768.9827 without restraints) Performing minimization step: 641. Total energy = 31757.0874 kcal/mol (31719.3906 without restraints) Performing minimization step: 642. Total energy = 31707.6475 kcal/mol (31669.9813 without restraints) Performing minimization step: 643. Total energy = 31658.3895 kcal/mol (31620.7538 without restraints) Performing minimization step: 644. Total energy = 31609.3122 kcal/mol (31571.7068 without restraints) Performing minimization step: 645. Total energy = 31560.4137 kcal/mol (31522.8387 without restraints) Performing minimization step: 646. Total energy = 31511.6931 kcal/mol (31474.1479 without restraints) Performing minimization step: 647. Total energy = 31463.1487 kcal/mol (31425.6336 without restraints) Performing minimization step: 648. Total energy = 31414.7796 kcal/mol (31377.2943 without restraints) Performing minimization step: 649. Total energy = 31366.5849 kcal/mol (31329.1295 without restraints) Performing minimization step: 650. Total energy = 31318.5635 kcal/mol (31281.1375 without restraints) Performing minimization step: 651. Total energy = 31270.7135 kcal/mol (31233.3168 without restraints) Performing minimization step: 652. Total energy = 31223.0339 kcal/mol (31185.6668 without restraints) Performing minimization step: 653. Total energy = 31175.5244 kcal/mol (31138.1864 without restraints) Performing minimization step: 654. Total energy = 31128.1838 kcal/mol (31090.8751 without restraints) Performing minimization step: 655. Total energy = 31081.0102 kcal/mol (31043.7305 without restraints) Performing minimization step: 656. Total energy = 31034.0021 kcal/mol (30996.7513 without restraints) Performing minimization step: 657. Total energy = 30987.1589 kcal/mol (30949.9369 without restraints) Performing minimization step: 658. Total energy = 30940.4796 kcal/mol (30903.2862 without restraints) Performing minimization step: 659. Total energy = 30893.9629 kcal/mol (30856.7981 without restraints) Performing minimization step: 660. Total energy = 30847.6084 kcal/mol (30810.4720 without restraints) Performing minimization step: 661. Total energy = 30801.4137 kcal/mol (30764.3056 without restraints) Performing minimization step: 662. Total energy = 30755.3783 kcal/mol (30718.2986 without restraints) Performing minimization step: 663. Total energy = 30709.5015 kcal/mol (30672.4500 without restraints) Performing minimization step: 664. Total energy = 30663.7825 kcal/mol (30626.7591 without restraints) Performing minimization step: 665. Total energy = 30618.2200 kcal/mol (30581.2243 without restraints) Performing minimization step: 666. Total energy = 30572.8123 kcal/mol (30535.8445 without restraints) Performing minimization step: 667. Total energy = 30527.5587 kcal/mol (30490.6186 without restraints) Performing minimization step: 668. Total energy = 30482.4585 kcal/mol (30445.5460 without restraints) Performing minimization step: 669. Total energy = 30437.5104 kcal/mol (30400.6255 without restraints) Performing minimization step: 670. Total energy = 30392.7135 kcal/mol (30355.8560 without restraints) Performing minimization step: 671. Total energy = 30348.0666 kcal/mol (30311.2364 without restraints) Performing minimization step: 672. Total energy = 30303.5695 kcal/mol (30266.7665 without restraints) Performing minimization step: 673. Total energy = 30259.2200 kcal/mol (30222.4441 without restraints) Performing minimization step: 674. Total energy = 30215.0183 kcal/mol (30178.2695 without restraints) Performing minimization step: 675. Total energy = 30170.9628 kcal/mol (30134.2409 without restraints) Performing minimization step: 676. Total energy = 30127.0527 kcal/mol (30090.3577 without restraints) Performing minimization step: 677. Total energy = 30083.2870 kcal/mol (30046.6188 without restraints) Performing minimization step: 678. Total energy = 30039.6649 kcal/mol (30003.0233 without restraints) Performing minimization step: 679. Total energy = 29996.1858 kcal/mol (29959.5708 without restraints) Performing minimization step: 680. Total energy = 29952.8484 kcal/mol (29916.2599 without restraints) Performing minimization step: 681. Total energy = 29909.6517 kcal/mol (29873.0895 without restraints) Performing minimization step: 682. Total energy = 29866.5947 kcal/mol (29830.0589 without restraints) Performing minimization step: 683. Total energy = 29823.6765 kcal/mol (29787.1669 without restraints) Performing minimization step: 684. Total energy = 29780.8967 kcal/mol (29744.4132 without restraints) Performing minimization step: 685. Total energy = 29738.2541 kcal/mol (29701.7965 without restraints) Performing minimization step: 686. Total energy = 29695.7478 kcal/mol (29659.3163 without restraints) Performing minimization step: 687. Total energy = 29653.3773 kcal/mol (29616.9717 without restraints) Performing minimization step: 688. Total energy = 29611.1418 kcal/mol (29574.7620 without restraints) Performing minimization step: 689. Total energy = 29569.0399 kcal/mol (29532.6858 without restraints) Performing minimization step: 690. Total energy = 29527.0711 kcal/mol (29490.7428 without restraints) Performing minimization step: 691. Total energy = 29485.2346 kcal/mol (29448.9318 without restraints) Performing minimization step: 692. Total energy = 29443.5295 kcal/mol (29407.2520 without restraints) Performing minimization step: 693. Total energy = 29401.9548 kcal/mol (29365.7028 without restraints) Performing minimization step: 694. Total energy = 29360.5101 kcal/mol (29324.2835 without restraints) Performing minimization step: 695. Total energy = 29319.1945 kcal/mol (29282.9930 without restraints) Performing minimization step: 696. Total energy = 29278.0069 kcal/mol (29241.8305 without restraints) Performing minimization step: 697. Total energy = 29236.9468 kcal/mol (29200.7955 without restraints) Performing minimization step: 698. Total energy = 29196.0133 kcal/mol (29159.8870 without restraints) Performing minimization step: 699. Total energy = 29155.2056 kcal/mol (29119.1044 without restraints) Performing minimization step: 700. Total energy = 29114.5232 kcal/mol (29078.4467 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 701. Total energy = 29073.9649 kcal/mol (29037.9132 without restraints) Performing minimization step: 702. Total energy = 29033.5303 kcal/mol (28997.5033 without restraints) Performing minimization step: 703. Total energy = 28993.2187 kcal/mol (28957.2164 without restraints) Performing minimization step: 704. Total energy = 28953.0291 kcal/mol (28917.0512 without restraints) Performing minimization step: 705. Total energy = 28912.9610 kcal/mol (28877.0078 without restraints) Performing minimization step: 706. Total energy = 28873.0137 kcal/mol (28837.0848 without restraints) Performing minimization step: 707. Total energy = 28833.1869 kcal/mol (28797.2825 without restraints) Performing minimization step: 708. Total energy = 28793.4797 kcal/mol (28757.5995 without restraints) Performing minimization step: 709. Total energy = 28753.8901 kcal/mol (28718.0341 without restraints) Performing minimization step: 710. Total energy = 28714.4182 kcal/mol (28678.5862 without restraints) Performing minimization step: 711. Total energy = 28675.0635 kcal/mol (28639.2556 without restraints) Performing minimization step: 712. Total energy = 28635.8253 kcal/mol (28600.0415 without restraints) Performing minimization step: 713. Total energy = 28596.7033 kcal/mol (28560.9434 without restraints) Performing minimization step: 714. Total energy = 28557.6959 kcal/mol (28521.9599 without restraints) Performing minimization step: 715. Total energy = 28518.8034 kcal/mol (28483.0912 without restraints) Performing minimization step: 716. Total energy = 28480.0246 kcal/mol (28444.3362 without restraints) Performing minimization step: 717. Total energy = 28441.3590 kcal/mol (28405.6942 without restraints) Performing minimization step: 718. Total energy = 28402.8060 kcal/mol (28367.1649 without restraints) Performing minimization step: 719. Total energy = 28364.3643 kcal/mol (28328.7467 without restraints) Performing minimization step: 720. Total energy = 28326.0342 kcal/mol (28290.4400 without restraints) Performing minimization step: 721. Total energy = 28287.8147 kcal/mol (28252.2440 without restraints) Performing minimization step: 722. Total energy = 28249.7050 kcal/mol (28214.1577 without restraints) Performing minimization step: 723. Total energy = 28211.7050 kcal/mol (28176.1810 without restraints) Performing minimization step: 724. Total energy = 28173.8132 kcal/mol (28138.3124 without restraints) Performing minimization step: 725. Total energy = 28136.0298 kcal/mol (28100.5522 without restraints) Performing minimization step: 726. Total energy = 28098.3544 kcal/mol (28062.8999 without restraints) Performing minimization step: 727. Total energy = 28060.7854 kcal/mol (28025.3540 without restraints) Performing minimization step: 728. Total energy = 28023.3231 kcal/mol (27987.9147 without restraints) Performing minimization step: 729. Total energy = 27985.9664 kcal/mol (27950.5809 without restraints) Performing minimization step: 730. Total energy = 27948.7145 kcal/mol (27913.3519 without restraints) Performing minimization step: 731. Total energy = 27911.5673 kcal/mol (27876.2276 without restraints) Performing minimization step: 732. Total energy = 27874.5240 kcal/mol (27839.2070 without restraints) Performing minimization step: 733. Total energy = 27837.5839 kcal/mol (27802.2897 without restraints) Performing minimization step: 734. Total energy = 27800.7468 kcal/mol (27765.4753 without restraints) Performing minimization step: 735. Total energy = 27764.0124 kcal/mol (27728.7637 without restraints) Performing minimization step: 736. Total energy = 27727.3798 kcal/mol (27692.1534 without restraints) Performing minimization step: 737. Total energy = 27690.8483 kcal/mol (27655.6445 without restraints) Performing minimization step: 738. Total energy = 27654.4174 kcal/mol (27619.2360 without restraints) Performing minimization step: 739. Total energy = 27618.0861 kcal/mol (27582.9270 without restraints) Performing minimization step: 740. Total energy = 27581.8546 kcal/mol (27546.7179 without restraints) Performing minimization step: 741. Total energy = 27545.7221 kcal/mol (27510.6077 without restraints) Performing minimization step: 742. Total energy = 27509.6883 kcal/mol (27474.5963 without restraints) Performing minimization step: 743. Total energy = 27473.7526 kcal/mol (27438.6827 without restraints) Performing minimization step: 744. Total energy = 27437.9136 kcal/mol (27402.8658 without restraints) Performing minimization step: 745. Total energy = 27402.1714 kcal/mol (27367.1456 without restraints) Performing minimization step: 746. Total energy = 27366.5262 kcal/mol (27331.5225 without restraints) Performing minimization step: 747. Total energy = 27330.9769 kcal/mol (27295.9952 without restraints) Performing minimization step: 748. Total energy = 27295.5229 kcal/mol (27260.5630 without restraints) Performing minimization step: 749. Total energy = 27260.1640 kcal/mol (27225.2261 without restraints) Performing minimization step: 750. Total energy = 27224.8994 kcal/mol (27189.9833 without restraints) Performing minimization step: 751. Total energy = 27189.7292 kcal/mol (27154.8349 without restraints) Performing minimization step: 752. Total energy = 27154.6520 kcal/mol (27119.7795 without restraints) Performing minimization step: 753. Total energy = 27119.6678 kcal/mol (27084.8169 without restraints) Performing minimization step: 754. Total energy = 27084.7759 kcal/mol (27049.9466 without restraints) Performing minimization step: 755. Total energy = 27049.9763 kcal/mol (27015.1687 without restraints) Performing minimization step: 756. Total energy = 27015.2684 kcal/mol (26980.4823 without restraints) Performing minimization step: 757. Total energy = 26980.6512 kcal/mol (26945.8866 without restraints) Performing minimization step: 758. Total energy = 26946.1239 kcal/mol (26911.3808 without restraints) Performing minimization step: 759. Total energy = 26911.6876 kcal/mol (26876.9659 without restraints) Performing minimization step: 760. Total energy = 26877.3407 kcal/mol (26842.6404 without restraints) Performing minimization step: 761. Total energy = 26843.0835 kcal/mol (26808.4046 without restraints) Performing minimization step: 762. Total energy = 26808.9149 kcal/mol (26774.2572 without restraints) Performing minimization step: 763. Total energy = 26774.8349 kcal/mol (26740.1985 without restraints) Performing minimization step: 764. Total energy = 26740.8427 kcal/mol (26706.2274 without restraints) Performing minimization step: 765. Total energy = 26706.9380 kcal/mol (26672.3439 without restraints) Performing minimization step: 766. Total energy = 26673.1204 kcal/mol (26638.5474 without restraints) Performing minimization step: 767. Total energy = 26639.3895 kcal/mol (26604.8374 without restraints) Performing minimization step: 768. Total energy = 26605.7445 kcal/mol (26571.2137 without restraints) Performing minimization step: 769. Total energy = 26572.1853 kcal/mol (26537.6754 without restraints) Performing minimization step: 770. Total energy = 26538.7119 kcal/mol (26504.2227 without restraints) Performing minimization step: 771. Total energy = 26505.3227 kcal/mol (26470.8545 without restraints) Performing minimization step: 772. Total energy = 26472.0179 kcal/mol (26437.5705 without restraints) Performing minimization step: 773. Total energy = 26438.7979 kcal/mol (26404.3714 without restraints) Performing minimization step: 774. Total energy = 26405.6615 kcal/mol (26371.2558 without restraints) Performing minimization step: 775. Total energy = 26372.6083 kcal/mol (26338.2231 without restraints) Performing minimization step: 776. Total energy = 26339.6378 kcal/mol (26305.2733 without restraints) Performing minimization step: 777. Total energy = 26306.7500 kcal/mol (26272.4064 without restraints) Performing minimization step: 778. Total energy = 26273.9443 kcal/mol (26239.6209 without restraints) Performing minimization step: 779. Total energy = 26241.2201 kcal/mol (26206.9175 without restraints) Performing minimization step: 780. Total energy = 26208.5775 kcal/mol (26174.2956 without restraints) Performing minimization step: 781. Total energy = 26176.0163 kcal/mol (26141.7547 without restraints) Performing minimization step: 782. Total energy = 26143.5358 kcal/mol (26109.2947 without restraints) Performing minimization step: 783. Total energy = 26111.1352 kcal/mol (26076.9146 without restraints) Performing minimization step: 784. Total energy = 26078.8146 kcal/mol (26044.6143 without restraints) Performing minimization step: 785. Total energy = 26046.5732 kcal/mol (26012.3931 without restraints) Performing minimization step: 786. Total energy = 26014.4110 kcal/mol (25980.2513 without restraints) Performing minimization step: 787. Total energy = 25982.3275 kcal/mol (25948.1880 without restraints) Performing minimization step: 788. Total energy = 25950.3225 kcal/mol (25916.2033 without restraints) Performing minimization step: 789. Total energy = 25918.3949 kcal/mol (25884.2956 without restraints) Performing minimization step: 790. Total energy = 25886.5452 kcal/mol (25852.4662 without restraints) Performing minimization step: 791. Total energy = 25854.7729 kcal/mol (25820.7140 without restraints) Performing minimization step: 792. Total energy = 25823.0776 kcal/mol (25789.0388 without restraints) Performing minimization step: 793. Total energy = 25791.4589 kcal/mol (25757.4402 without restraints) Performing minimization step: 794. Total energy = 25759.9167 kcal/mol (25725.9180 without restraints) Performing minimization step: 795. Total energy = 25728.4503 kcal/mol (25694.4714 without restraints) Performing minimization step: 796. Total energy = 25697.0593 kcal/mol (25663.1004 without restraints) Performing minimization step: 797. Total energy = 25665.7436 kcal/mol (25631.8046 without restraints) Performing minimization step: 798. Total energy = 25634.5026 kcal/mol (25600.5834 without restraints) Performing minimization step: 799. Total energy = 25603.3364 kcal/mol (25569.4371 without restraints) Performing minimization step: 800. Total energy = 25572.2446 kcal/mol (25538.3650 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 801. Total energy = 25541.2265 kcal/mol (25507.3667 without restraints) Performing minimization step: 802. Total energy = 25510.2821 kcal/mol (25476.4420 without restraints) Performing minimization step: 803. Total energy = 25479.4109 kcal/mol (25445.5905 without restraints) Performing minimization step: 804. Total energy = 25448.6127 kcal/mol (25414.8119 without restraints) Performing minimization step: 805. Total energy = 25417.8868 kcal/mol (25384.1054 without restraints) Performing minimization step: 806. Total energy = 25387.2333 kcal/mol (25353.4719 without restraints) Performing minimization step: 807. Total energy = 25356.6524 kcal/mol (25322.9103 without restraints) Performing minimization step: 808. Total energy = 25326.1428 kcal/mol (25292.4203 without restraints) Performing minimization step: 809. Total energy = 25295.7048 kcal/mol (25262.0017 without restraints) Performing minimization step: 810. Total energy = 25265.3380 kcal/mol (25231.6545 without restraints) Performing minimization step: 811. Total energy = 25235.0416 kcal/mol (25201.3774 without restraints) Performing minimization step: 812. Total energy = 25204.8159 kcal/mol (25171.1710 without restraints) Performing minimization step: 813. Total energy = 25174.6601 kcal/mol (25141.0346 without restraints) Performing minimization step: 814. Total energy = 25144.5739 kcal/mol (25110.9677 without restraints) Performing minimization step: 815. Total energy = 25114.5575 kcal/mol (25080.9708 without restraints) Performing minimization step: 816. Total energy = 25084.6107 kcal/mol (25051.0431 without restraints) Performing minimization step: 817. Total energy = 25054.7328 kcal/mol (25021.1844 without restraints) Performing minimization step: 818. Total energy = 25024.9238 kcal/mol (24991.3947 without restraints) Performing minimization step: 819. Total energy = 24995.1835 kcal/mol (24961.6734 without restraints) Performing minimization step: 820. Total energy = 24965.5108 kcal/mol (24932.0199 without restraints) Performing minimization step: 821. Total energy = 24935.9059 kcal/mol (24902.4341 without restraints) Performing minimization step: 822. Total energy = 24906.3692 kcal/mol (24872.9165 without restraints) Performing minimization step: 823. Total energy = 24876.8995 kcal/mol (24843.4657 without restraints) Performing minimization step: 824. Total energy = 24847.4967 kcal/mol (24814.0819 without restraints) Performing minimization step: 825. Total energy = 24818.1604 kcal/mol (24784.7644 without restraints) Performing minimization step: 826. Total energy = 24788.8909 kcal/mol (24755.5140 without restraints) Performing minimization step: 827. Total energy = 24759.6876 kcal/mol (24726.3296 without restraints) Performing minimization step: 828. Total energy = 24730.5503 kcal/mol (24697.2112 without restraints) Performing minimization step: 829. Total energy = 24701.4791 kcal/mol (24668.1588 without restraints) Performing minimization step: 830. Total energy = 24672.4732 kcal/mol (24639.1718 without restraints) Performing minimization step: 831. Total energy = 24643.5321 kcal/mol (24610.2495 without restraints) Performing minimization step: 832. Total energy = 24614.6558 kcal/mol (24581.3920 without restraints) Performing minimization step: 833. Total energy = 24585.8447 kcal/mol (24552.5995 without restraints) Performing minimization step: 834. Total energy = 24557.0977 kcal/mol (24523.8713 without restraints) Performing minimization step: 835. Total energy = 24528.4151 kcal/mol (24495.2072 without restraints) Performing minimization step: 836. Total energy = 24499.7961 kcal/mol (24466.6069 without restraints) Performing minimization step: 837. Total energy = 24471.2408 kcal/mol (24438.0703 without restraints) Performing minimization step: 838. Total energy = 24442.7486 kcal/mol (24409.5966 without restraints) Performing minimization step: 839. Total energy = 24414.3200 kcal/mol (24381.1865 without restraints) Performing minimization step: 840. Total energy = 24385.9542 kcal/mol (24352.8393 without restraints) Performing minimization step: 841. Total energy = 24357.6513 kcal/mol (24324.5549 without restraints) Performing minimization step: 842. Total energy = 24329.4108 kcal/mol (24296.3329 without restraints) Performing minimization step: 843. Total energy = 24301.2322 kcal/mol (24268.1726 without restraints) Performing minimization step: 844. Total energy = 24273.1153 kcal/mol (24240.0743 without restraints) Performing minimization step: 845. Total energy = 24245.0598 kcal/mol (24212.0373 without restraints) Performing minimization step: 846. Total energy = 24217.0658 kcal/mol (24184.0615 without restraints) Performing minimization step: 847. Total energy = 24189.1339 kcal/mol (24156.1479 without restraints) Performing minimization step: 848. Total energy = 24161.2626 kcal/mol (24128.2949 without restraints) Performing minimization step: 849. Total energy = 24133.4525 kcal/mol (24100.5031 without restraints) Performing minimization step: 850. Total energy = 24105.7028 kcal/mol (24072.7716 without restraints) Performing minimization step: 851. Total energy = 24078.0130 kcal/mol (24045.1001 without restraints) Performing minimization step: 852. Total energy = 24050.3835 kcal/mol (24017.4887 without restraints) Performing minimization step: 853. Total energy = 24022.8138 kcal/mol (23989.9372 without restraints) Performing minimization step: 854. Total energy = 23995.3037 kcal/mol (23962.4453 without restraints) Performing minimization step: 855. Total energy = 23967.8534 kcal/mol (23935.0130 without restraints) Performing minimization step: 856. Total energy = 23940.4616 kcal/mol (23907.6395 without restraints) Performing minimization step: 857. Total energy = 23913.1293 kcal/mol (23880.3251 without restraints) Performing minimization step: 858. Total energy = 23885.8547 kcal/mol (23853.0686 without restraints) Performing minimization step: 859. Total energy = 23858.6399 kcal/mol (23825.8719 without restraints) Performing minimization step: 860. Total energy = 23831.4836 kcal/mol (23798.7334 without restraints) Performing minimization step: 861. Total energy = 23804.3849 kcal/mol (23771.6527 without restraints) Performing minimization step: 862. Total energy = 23777.3439 kcal/mol (23744.6296 without restraints) Performing minimization step: 863. Total energy = 23750.3608 kcal/mol (23717.6643 without restraints) Performing minimization step: 864. Total energy = 23723.4354 kcal/mol (23690.7568 without restraints) Performing minimization step: 865. Total energy = 23696.5673 kcal/mol (23663.9066 without restraints) Performing minimization step: 866. Total energy = 23669.7566 kcal/mol (23637.1137 without restraints) Performing minimization step: 867. Total energy = 23643.0026 kcal/mol (23610.3775 without restraints) Performing minimization step: 868. Total energy = 23616.3052 kcal/mol (23583.6979 without restraints) Performing minimization step: 869. Total energy = 23589.6647 kcal/mol (23557.0752 without restraints) Performing minimization step: 870. Total energy = 23563.0804 kcal/mol (23530.5086 without restraints) Performing minimization step: 871. Total energy = 23536.5521 kcal/mol (23503.9978 without restraints) Performing minimization step: 872. Total energy = 23510.0793 kcal/mol (23477.5428 without restraints) Performing minimization step: 873. Total energy = 23483.6626 kcal/mol (23451.1438 without restraints) Performing minimization step: 874. Total energy = 23457.3014 kcal/mol (23424.8001 without restraints) Performing minimization step: 875. Total energy = 23430.9952 kcal/mol (23398.5117 without restraints) Performing minimization step: 876. Total energy = 23404.7442 kcal/mol (23372.2782 without restraints) Performing minimization step: 877. Total energy = 23378.5485 kcal/mol (23346.1001 without restraints) Performing minimization step: 878. Total energy = 23352.4075 kcal/mol (23319.9765 without restraints) Performing minimization step: 879. Total energy = 23326.3212 kcal/mol (23293.9077 without restraints) Performing minimization step: 880. Total energy = 23300.2890 kcal/mol (23267.8930 without restraints) Performing minimization step: 881. Total energy = 23274.3110 kcal/mol (23241.9325 without restraints) Performing minimization step: 882. Total energy = 23248.3871 kcal/mol (23216.0260 without restraints) Performing minimization step: 883. Total energy = 23222.5170 kcal/mol (23190.1733 without restraints) Performing minimization step: 884. Total energy = 23196.7010 kcal/mol (23164.3746 without restraints) Performing minimization step: 885. Total energy = 23170.9380 kcal/mol (23138.6291 without restraints) Performing minimization step: 886. Total energy = 23145.2287 kcal/mol (23112.9370 without restraints) Performing minimization step: 887. Total energy = 23119.5723 kcal/mol (23087.2979 without restraints) Performing minimization step: 888. Total energy = 23093.9683 kcal/mol (23061.7111 without restraints) Performing minimization step: 889. Total energy = 23068.4172 kcal/mol (23036.1774 without restraints) Performing minimization step: 890. Total energy = 23042.9189 kcal/mol (23010.6963 without restraints) Performing minimization step: 891. Total energy = 23017.4730 kcal/mol (22985.2676 without restraints) Performing minimization step: 892. Total energy = 22992.0794 kcal/mol (22959.8912 without restraints) Performing minimization step: 893. Total energy = 22966.7381 kcal/mol (22934.5672 without restraints) Performing minimization step: 894. Total energy = 22941.4485 kcal/mol (22909.2946 without restraints) Performing minimization step: 895. Total energy = 22916.2108 kcal/mol (22884.0740 without restraints) Performing minimization step: 896. Total energy = 22891.0247 kcal/mol (22858.9049 without restraints) Performing minimization step: 897. Total energy = 22865.8894 kcal/mol (22833.7868 without restraints) Performing minimization step: 898. Total energy = 22840.8055 kcal/mol (22808.7198 without restraints) Performing minimization step: 899. Total energy = 22815.7726 kcal/mol (22783.7039 without restraints) Performing minimization step: 900. Total energy = 22790.7906 kcal/mol (22758.7389 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 901. Total energy = 22765.8594 kcal/mol (22733.8249 without restraints) Performing minimization step: 902. Total energy = 22740.9792 kcal/mol (22708.9615 without restraints) Performing minimization step: 903. Total energy = 22716.1489 kcal/mol (22684.1479 without restraints) Performing minimization step: 904. Total energy = 22691.3684 kcal/mol (22659.3846 without restraints) Performing minimization step: 905. Total energy = 22666.6386 kcal/mol (22634.6716 without restraints) Performing minimization step: 906. Total energy = 22641.9593 kcal/mol (22610.0091 without restraints) Performing minimization step: 907. Total energy = 22617.3294 kcal/mol (22585.3960 without restraints) Performing minimization step: 908. Total energy = 22592.7490 kcal/mol (22560.8325 without restraints) Performing minimization step: 909. Total energy = 22568.2184 kcal/mol (22536.3186 without restraints) Performing minimization step: 910. Total energy = 22543.7370 kcal/mol (22511.8540 without restraints) Performing minimization step: 911. Total energy = 22519.3047 kcal/mol (22487.4385 without restraints) Performing minimization step: 912. Total energy = 22494.9210 kcal/mol (22463.0714 without restraints) Performing minimization step: 913. Total energy = 22470.5863 kcal/mol (22438.7534 without restraints) Performing minimization step: 914. Total energy = 22446.3008 kcal/mol (22414.4846 without restraints) Performing minimization step: 915. Total energy = 22422.0633 kcal/mol (22390.2638 without restraints) Performing minimization step: 916. Total energy = 22397.8742 kcal/mol (22366.0913 without restraints) Performing minimization step: 917. Total energy = 22373.7335 kcal/mol (22341.9671 without restraints) Performing minimization step: 918. Total energy = 22349.6409 kcal/mol (22317.8912 without restraints) Performing minimization step: 919. Total energy = 22325.5959 kcal/mol (22293.8627 without restraints) Performing minimization step: 920. Total energy = 22301.5991 kcal/mol (22269.8825 without restraints) Performing minimization step: 921. Total energy = 22277.6497 kcal/mol (22245.9495 without restraints) Performing minimization step: 922. Total energy = 22253.7478 kcal/mol (22222.0642 without restraints) Performing minimization step: 923. Total energy = 22229.8935 kcal/mol (22198.2263 without restraints) Performing minimization step: 924. Total energy = 22206.0862 kcal/mol (22174.4355 without restraints) Performing minimization step: 925. Total energy = 22182.3262 kcal/mol (22150.6918 without restraints) Performing minimization step: 926. Total energy = 22158.6132 kcal/mol (22126.9953 without restraints) Performing minimization step: 927. Total energy = 22134.9472 kcal/mol (22103.3457 without restraints) Performing minimization step: 928. Total energy = 22111.3279 kcal/mol (22079.7429 without restraints) Performing minimization step: 929. Total energy = 22087.7552 kcal/mol (22056.1864 without restraints) Performing minimization step: 930. Total energy = 22064.2289 kcal/mol (22032.6763 without restraints) Performing minimization step: 931. Total energy = 22040.7486 kcal/mol (22009.2123 without restraints) Performing minimization step: 932. Total energy = 22017.3144 kcal/mol (21985.7945 without restraints) Performing minimization step: 933. Total energy = 21993.9261 kcal/mol (21962.4224 without restraints) Performing minimization step: 934. Total energy = 21970.5836 kcal/mol (21939.0961 without restraints) Performing minimization step: 935. Total energy = 21947.2875 kcal/mol (21915.8161 without restraints) Performing minimization step: 936. Total energy = 21924.0364 kcal/mol (21892.5813 without restraints) Performing minimization step: 937. Total energy = 21900.8312 kcal/mol (21869.3922 without restraints) Performing minimization step: 938. Total energy = 21877.6713 kcal/mol (21846.2485 without restraints) Performing minimization step: 939. Total energy = 21854.5561 kcal/mol (21823.1494 without restraints) Performing minimization step: 940. Total energy = 21831.4860 kcal/mol (21800.0954 without restraints) Performing minimization step: 941. Total energy = 21808.4612 kcal/mol (21777.0867 without restraints) Performing minimization step: 942. Total energy = 21785.4813 kcal/mol (21754.1228 without restraints) Performing minimization step: 943. Total energy = 21762.5458 kcal/mol (21731.2034 without restraints) Performing minimization step: 944. Total energy = 21739.6555 kcal/mol (21708.3293 without restraints) Performing minimization step: 945. Total energy = 21716.8094 kcal/mol (21685.4990 without restraints) Performing minimization step: 946. Total energy = 21694.0075 kcal/mol (21662.7130 without restraints) Performing minimization step: 947. Total energy = 21671.2494 kcal/mol (21639.9709 without restraints) Performing minimization step: 948. Total energy = 21648.5353 kcal/mol (21617.2727 without restraints) Performing minimization step: 949. Total energy = 21625.8652 kcal/mol (21594.6185 without restraints) Performing minimization step: 950. Total energy = 21603.2387 kcal/mol (21572.0079 without restraints) Performing minimization step: 951. Total energy = 21580.6560 kcal/mol (21549.4411 without restraints) Performing minimization step: 952. Total energy = 21558.1171 kcal/mol (21526.9179 without restraints) Performing minimization step: 953. Total energy = 21535.6213 kcal/mol (21504.4381 without restraints) Performing minimization step: 954. Total energy = 21513.1684 kcal/mol (21482.0009 without restraints) Performing minimization step: 955. Total energy = 21490.7597 kcal/mol (21459.6080 without restraints) Performing minimization step: 956. Total energy = 21468.3937 kcal/mol (21437.2577 without restraints) Performing minimization step: 957. Total energy = 21446.0707 kcal/mol (21414.9504 without restraints) Performing minimization step: 958. Total energy = 21423.7903 kcal/mol (21392.6858 without restraints) Performing minimization step: 959. Total energy = 21401.5533 kcal/mol (21370.4645 without restraints) Performing minimization step: 960. Total energy = 21379.3582 kcal/mol (21348.2850 without restraints) Performing minimization step: 961. Total energy = 21357.2063 kcal/mol (21326.1488 without restraints) Performing minimization step: 962. Total energy = 21335.0963 kcal/mol (21304.0544 without restraints) Performing minimization step: 963. Total energy = 21313.0285 kcal/mol (21282.0022 without restraints) Performing minimization step: 964. Total energy = 21291.0034 kcal/mol (21259.9928 without restraints) Performing minimization step: 965. Total energy = 21269.0200 kcal/mol (21238.0248 without restraints) Performing minimization step: 966. Total energy = 21247.0782 kcal/mol (21216.0986 without restraints) Performing minimization step: 967. Total energy = 21225.1783 kcal/mol (21194.2142 without restraints) Performing minimization step: 968. Total energy = 21203.3201 kcal/mol (21172.3715 without restraints) Performing minimization step: 969. Total energy = 21181.5037 kcal/mol (21150.5706 without restraints) Performing minimization step: 970. Total energy = 21159.7285 kcal/mol (21128.8108 without restraints) Performing minimization step: 971. Total energy = 21137.9949 kcal/mol (21107.0927 without restraints) Performing minimization step: 972. Total energy = 21116.3024 kcal/mol (21085.4157 without restraints) Performing minimization step: 973. Total energy = 21094.6511 kcal/mol (21063.7797 without restraints) Performing minimization step: 974. Total energy = 21073.0406 kcal/mol (21042.1846 without restraints) Performing minimization step: 975. Total energy = 21051.4708 kcal/mol (21020.6301 without restraints) Performing minimization step: 976. Total energy = 21029.9423 kcal/mol (20999.1170 without restraints) Performing minimization step: 977. Total energy = 21008.4543 kcal/mol (20977.6442 without restraints) Performing minimization step: 978. Total energy = 20987.0067 kcal/mol (20956.2119 without restraints) Performing minimization step: 979. Total energy = 20965.5998 kcal/mol (20934.8203 without restraints) Performing minimization step: 980. Total energy = 20944.2338 kcal/mol (20913.4695 without restraints) Performing minimization step: 981. Total energy = 20922.9074 kcal/mol (20892.1584 without restraints) Performing minimization step: 982. Total energy = 20901.6210 kcal/mol (20870.8872 without restraints) Performing minimization step: 983. Total energy = 20880.3756 kcal/mol (20849.6570 without restraints) Performing minimization step: 984. Total energy = 20859.1700 kcal/mol (20828.4665 without restraints) Performing minimization step: 985. Total energy = 20838.0036 kcal/mol (20807.3153 without restraints) Performing minimization step: 986. Total energy = 20816.8770 kcal/mol (20786.2039 without restraints) Performing minimization step: 987. Total energy = 20795.7901 kcal/mol (20765.1321 without restraints) Performing minimization step: 988. Total energy = 20774.7428 kcal/mol (20744.0998 without restraints) Performing minimization step: 989. Total energy = 20753.7350 kcal/mol (20723.1071 without restraints) Performing minimization step: 990. Total energy = 20732.7663 kcal/mol (20702.1535 without restraints) Performing minimization step: 991. Total energy = 20711.8369 kcal/mol (20681.2391 without restraints) Performing minimization step: 992. Total energy = 20690.9463 kcal/mol (20660.3635 without restraints) Performing minimization step: 993. Total energy = 20670.0951 kcal/mol (20639.5273 without restraints) Performing minimization step: 994. Total energy = 20649.2827 kcal/mol (20618.7299 without restraints) Performing minimization step: 995. Total energy = 20628.5093 kcal/mol (20597.9714 without restraints) Performing minimization step: 996. Total energy = 20607.7745 kcal/mol (20577.2514 without restraints) Performing minimization step: 997. Total energy = 20587.0783 kcal/mol (20556.5702 without restraints) Performing minimization step: 998. Total energy = 20566.4212 kcal/mol (20535.9280 without restraints) Performing minimization step: 999. Total energy = 20545.8021 kcal/mol (20515.3237 without restraints) Performing minimization step: 1000. Total energy = 20525.2214 kcal/mol (20494.7579 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 20504.6789 kcal/mol (20474.2302 without restraints) Performing minimization step: 1002. Total energy = 20484.1748 kcal/mol (20453.7412 without restraints) Performing minimization step: 1003. Total energy = 20463.7093 kcal/mol (20433.2901 without restraints) Performing minimization step: 1004. Total energy = 20443.2810 kcal/mol (20412.8767 without restraints) Performing minimization step: 1005. Total energy = 20422.8904 kcal/mol (20392.5008 without restraints) Performing minimization step: 1006. Total energy = 20402.5379 kcal/mol (20372.1631 without restraints) Performing minimization step: 1007. Total energy = 20382.2228 kcal/mol (20351.8627 without restraints) Performing minimization step: 1008. Total energy = 20361.9452 kcal/mol (20331.5995 without restraints) Performing minimization step: 1009. Total energy = 20341.7052 kcal/mol (20311.3746 without restraints) Performing minimization step: 1010. Total energy = 20321.5027 kcal/mol (20291.1866 without restraints) Performing minimization step: 1011. Total energy = 20301.3374 kcal/mol (20271.0358 without restraints) Performing minimization step: 1012. Total energy = 20281.2097 kcal/mol (20250.9227 without restraints) Performing minimization step: 1013. Total energy = 20261.1187 kcal/mol (20230.8464 without restraints) Performing minimization step: 1014. Total energy = 20241.0649 kcal/mol (20210.8073 without restraints) Performing minimization step: 1015. Total energy = 20221.0480 kcal/mol (20190.8048 without restraints) Performing minimization step: 1016. Total energy = 20201.0677 kcal/mol (20170.8389 without restraints) Performing minimization step: 1017. Total energy = 20181.1240 kcal/mol (20150.9098 without restraints) Performing minimization step: 1018. Total energy = 20161.2173 kcal/mol (20131.0176 without restraints) Performing minimization step: 1019. Total energy = 20141.3472 kcal/mol (20111.1619 without restraints) Performing minimization step: 1020. Total energy = 20121.5133 kcal/mol (20091.3425 without restraints) Performing minimization step: 1021. Total energy = 20101.7160 kcal/mol (20071.5596 without restraints) Performing minimization step: 1022. Total energy = 20081.9549 kcal/mol (20051.8129 without restraints) Performing minimization step: 1023. Total energy = 20062.2302 kcal/mol (20032.1025 without restraints) Performing minimization step: 1024. Total energy = 20042.5415 kcal/mol (20012.4282 without restraints) Performing minimization step: 1025. Total energy = 20022.8896 kcal/mol (19992.7907 without restraints) Performing minimization step: 1026. Total energy = 20003.2727 kcal/mol (19973.1881 without restraints) Performing minimization step: 1027. Total energy = 19983.6919 kcal/mol (19953.6216 without restraints) Performing minimization step: 1028. Total energy = 19964.1470 kcal/mol (19934.0911 without restraints) Performing minimization step: 1029. Total energy = 19944.6376 kcal/mol (19914.5959 without restraints) Performing minimization step: 1030. Total energy = 19925.1638 kcal/mol (19895.1363 without restraints) Performing minimization step: 1031. Total energy = 19905.7256 kcal/mol (19875.7123 without restraints) Performing minimization step: 1032. Total energy = 19886.3230 kcal/mol (19856.3240 without restraints) Performing minimization step: 1033. Total energy = 19866.9559 kcal/mol (19836.9710 without restraints) Performing minimization step: 1034. Total energy = 19847.6231 kcal/mol (19817.6523 without restraints) Performing minimization step: 1035. Total energy = 19828.3261 kcal/mol (19798.3693 without restraints) Performing minimization step: 1036. Total energy = 19809.0645 kcal/mol (19779.1220 without restraints) Performing minimization step: 1037. Total energy = 19789.8375 kcal/mol (19759.9091 without restraints) Performing minimization step: 1038. Total energy = 19770.6457 kcal/mol (19740.7314 without restraints) Performing minimization step: 1039. Total energy = 19751.4886 kcal/mol (19721.5884 without restraints) Performing minimization step: 1040. Total energy = 19732.3663 kcal/mol (19702.4800 without restraints) Performing minimization step: 1041. Total energy = 19713.2796 kcal/mol (19683.4076 without restraints) Performing minimization step: 1042. Total energy = 19694.2265 kcal/mol (19664.3684 without restraints) Performing minimization step: 1043. Total energy = 19675.2079 kcal/mol (19645.3638 without restraints) Performing minimization step: 1044. Total energy = 19656.2243 kcal/mol (19626.3942 without restraints) Performing minimization step: 1045. Total energy = 19637.2748 kcal/mol (19607.4586 without restraints) Performing minimization step: 1046. Total energy = 19618.3594 kcal/mol (19588.5572 without restraints) Performing minimization step: 1047. Total energy = 19599.4783 kcal/mol (19569.6899 without restraints) Performing minimization step: 1048. Total energy = 19580.6311 kcal/mol (19550.8565 without restraints) Performing minimization step: 1049. Total energy = 19561.8177 kcal/mol (19532.0571 without restraints) Performing minimization step: 1050. Total energy = 19543.0386 kcal/mol (19513.2919 without restraints) Performing minimization step: 1051. Total energy = 19524.2931 kcal/mol (19494.5602 without restraints) Performing minimization step: 1052. Total energy = 19505.5815 kcal/mol (19475.8624 without restraints) Performing minimization step: 1053. Total energy = 19486.9038 kcal/mol (19457.1984 without restraints) Performing minimization step: 1054. Total energy = 19468.2596 kcal/mol (19438.5682 without restraints) Performing minimization step: 1055. Total energy = 19449.6492 kcal/mol (19419.9715 without restraints) Performing minimization step: 1056. Total energy = 19431.0726 kcal/mol (19401.4086 without restraints) Performing minimization step: 1057. Total energy = 19412.5294 kcal/mol (19382.8790 without restraints) Performing minimization step: 1058. Total energy = 19394.0191 kcal/mol (19364.3826 without restraints) Performing minimization step: 1059. Total energy = 19375.5425 kcal/mol (19345.9195 without restraints) Performing minimization step: 1060. Total energy = 19357.0989 kcal/mol (19327.4897 without restraints) Performing minimization step: 1061. Total energy = 19338.6882 kcal/mol (19309.0925 without restraints) Performing minimization step: 1062. Total energy = 19320.3094 kcal/mol (19290.7274 without restraints) Performing minimization step: 1063. Total energy = 19301.9646 kcal/mol (19272.3960 without restraints) Performing minimization step: 1064. Total energy = 19283.6527 kcal/mol (19254.0978 without restraints) Performing minimization step: 1065. Total energy = 19265.3730 kcal/mol (19235.8316 without restraints) Performing minimization step: 1066. Total energy = 19247.1264 kcal/mol (19217.5986 without restraints) Performing minimization step: 1067. Total energy = 19228.9129 kcal/mol (19199.3986 without restraints) Performing minimization step: 1068. Total energy = 19210.7317 kcal/mol (19181.2309 without restraints) Performing minimization step: 1069. Total energy = 19192.5826 kcal/mol (19163.0952 without restraints) Performing minimization step: 1070. Total energy = 19174.4661 kcal/mol (19144.9923 without restraints) Performing minimization step: 1071. Total energy = 19156.3818 kcal/mol (19126.9215 without restraints) Performing minimization step: 1072. Total energy = 19138.3300 kcal/mol (19108.8831 without restraints) Performing minimization step: 1073. Total energy = 19120.3105 kcal/mol (19090.8769 without restraints) Performing minimization step: 1074. Total energy = 19102.3230 kcal/mol (19072.9028 without restraints) Performing minimization step: 1075. Total energy = 19084.3672 kcal/mol (19054.9604 without restraints) Performing minimization step: 1076. Total energy = 19066.4443 kcal/mol (19037.0509 without restraints) Performing minimization step: 1077. Total energy = 19048.5528 kcal/mol (19019.1727 without restraints) Performing minimization step: 1078. Total energy = 19030.6933 kcal/mol (19001.3265 without restraints) Performing minimization step: 1079. Total energy = 19012.8651 kcal/mol (18983.5116 without restraints) Performing minimization step: 1080. Total energy = 18995.0688 kcal/mol (18965.7286 without restraints) Performing minimization step: 1081. Total energy = 18977.3042 kcal/mol (18947.9771 without restraints) Performing minimization step: 1082. Total energy = 18959.5708 kcal/mol (18930.2572 without restraints) Performing minimization step: 1083. Total energy = 18941.8688 kcal/mol (18912.5683 without restraints) Performing minimization step: 1084. Total energy = 18924.1988 kcal/mol (18894.9114 without restraints) Performing minimization step: 1085. Total energy = 18906.5597 kcal/mol (18877.2856 without restraints) Performing minimization step: 1086. Total energy = 18888.9516 kcal/mol (18859.6906 without restraints) Performing minimization step: 1087. Total energy = 18871.3751 kcal/mol (18842.1274 without restraints) Performing minimization step: 1088. Total energy = 18853.8297 kcal/mol (18824.5950 without restraints) Performing minimization step: 1089. Total energy = 18836.3157 kcal/mol (18807.0940 without restraints) Performing minimization step: 1090. Total energy = 18818.8321 kcal/mol (18789.6235 without restraints) Performing minimization step: 1091. Total energy = 18801.3798 kcal/mol (18772.1844 without restraints) Performing minimization step: 1092. Total energy = 18783.9580 kcal/mol (18754.7755 without restraints) Performing minimization step: 1093. Total energy = 18766.5668 kcal/mol (18737.3974 without restraints) Performing minimization step: 1094. Total energy = 18749.2067 kcal/mol (18720.0502 without restraints) Performing minimization step: 1095. Total energy = 18731.8770 kcal/mol (18702.7337 without restraints) Performing minimization step: 1096. Total energy = 18714.5780 kcal/mol (18685.4476 without restraints) Performing minimization step: 1097. Total energy = 18697.3094 kcal/mol (18668.1919 without restraints) Performing minimization step: 1098. Total energy = 18680.0711 kcal/mol (18650.9665 without restraints) Performing minimization step: 1099. Total energy = 18662.8628 kcal/mol (18633.7713 without restraints) Performing minimization step: 1100. Total energy = 18645.6855 kcal/mol (18616.6068 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 18628.5378 kcal/mol (18599.4719 without restraints) Performing minimization step: 1102. Total energy = 18611.4205 kcal/mol (18582.3674 without restraints) Performing minimization step: 1103. Total energy = 18594.3334 kcal/mol (18565.2933 without restraints) Performing minimization step: 1104. Total energy = 18577.2762 kcal/mol (18548.2488 without restraints) Performing minimization step: 1105. Total energy = 18560.2489 kcal/mol (18531.2343 without restraints) Performing minimization step: 1106. Total energy = 18543.2512 kcal/mol (18514.2493 without restraints) Performing minimization step: 1107. Total energy = 18526.2837 kcal/mol (18497.2947 without restraints) Performing minimization step: 1108. Total energy = 18509.3455 kcal/mol (18480.3692 without restraints) Performing minimization step: 1109. Total energy = 18492.4371 kcal/mol (18463.4735 without restraints) Performing minimization step: 1110. Total energy = 18475.5584 kcal/mol (18446.6074 without restraints) Performing minimization step: 1111. Total energy = 18458.7090 kcal/mol (18429.7708 without restraints) Performing minimization step: 1112. Total energy = 18441.8897 kcal/mol (18412.9641 without restraints) Performing minimization step: 1113. Total energy = 18425.0994 kcal/mol (18396.1865 without restraints) Performing minimization step: 1114. Total energy = 18408.3390 kcal/mol (18379.4388 without restraints) Performing minimization step: 1115. Total energy = 18391.6075 kcal/mol (18362.7198 without restraints) Performing minimization step: 1116. Total energy = 18374.9049 kcal/mol (18346.0299 without restraints) Performing minimization step: 1117. Total energy = 18358.2318 kcal/mol (18329.3693 without restraints) Performing minimization step: 1118. Total energy = 18341.5875 kcal/mol (18312.7376 without restraints) Performing minimization step: 1119. Total energy = 18324.9722 kcal/mol (18296.1347 without restraints) Performing minimization step: 1120. Total energy = 18308.3855 kcal/mol (18279.5606 without restraints) Performing minimization step: 1121. Total energy = 18291.8288 kcal/mol (18263.0165 without restraints) Performing minimization step: 1122. Total energy = 18275.3003 kcal/mol (18246.5003 without restraints) Performing minimization step: 1123. Total energy = 18258.7998 kcal/mol (18230.0123 without restraints) Performing minimization step: 1124. Total energy = 18242.3288 kcal/mol (18213.5538 without restraints) Performing minimization step: 1125. Total energy = 18225.8865 kcal/mol (18197.1239 without restraints) Performing minimization step: 1126. Total energy = 18209.4722 kcal/mol (18180.7220 without restraints) Performing minimization step: 1127. Total energy = 18193.0868 kcal/mol (18164.3490 without restraints) Performing minimization step: 1128. Total energy = 18176.7300 kcal/mol (18148.0046 without restraints) Performing minimization step: 1129. Total energy = 18160.4011 kcal/mol (18131.6880 without restraints) Performing minimization step: 1130. Total energy = 18144.1009 kcal/mol (18115.4002 without restraints) Performing minimization step: 1131. Total energy = 18127.8288 kcal/mol (18099.1404 without restraints) Performing minimization step: 1132. Total energy = 18111.5849 kcal/mol (18082.9087 without restraints) Performing minimization step: 1133. Total energy = 18095.3688 kcal/mol (18066.7049 without restraints) Performing minimization step: 1134. Total energy = 18079.1808 kcal/mol (18050.5291 without restraints) Performing minimization step: 1135. Total energy = 18063.0206 kcal/mol (18034.3811 without restraints) Performing minimization step: 1136. Total energy = 18046.8885 kcal/mol (18018.2614 without restraints) Performing minimization step: 1137. Total energy = 18030.7843 kcal/mol (18002.1694 without restraints) Performing minimization step: 1138. Total energy = 18014.7079 kcal/mol (17986.1050 without restraints) Performing minimization step: 1139. Total energy = 17998.6593 kcal/mol (17970.0687 without restraints) Performing minimization step: 1140. Total energy = 17982.6382 kcal/mol (17954.0597 without restraints) Performing minimization step: 1141. Total energy = 17966.6449 kcal/mol (17938.0786 without restraints) Performing minimization step: 1142. Total energy = 17950.6792 kcal/mol (17922.1249 without restraints) Performing minimization step: 1143. Total energy = 17934.7411 kcal/mol (17906.1990 without restraints) Performing minimization step: 1144. Total energy = 17918.8308 kcal/mol (17890.3007 without restraints) Performing minimization step: 1145. Total energy = 17902.9472 kcal/mol (17874.4292 without restraints) Performing minimization step: 1146. Total energy = 17887.0914 kcal/mol (17858.5855 without restraints) Performing minimization step: 1147. Total energy = 17871.2626 kcal/mol (17842.7687 without restraints) Performing minimization step: 1148. Total energy = 17855.4610 kcal/mol (17826.9791 without restraints) Performing minimization step: 1149. Total energy = 17839.6865 kcal/mol (17811.2168 without restraints) Performing minimization step: 1150. Total energy = 17823.9395 kcal/mol (17795.4815 without restraints) Performing minimization step: 1151. Total energy = 17808.2191 kcal/mol (17779.7731 without restraints) Performing minimization step: 1152. Total energy = 17792.5256 kcal/mol (17764.0915 without restraints) Performing minimization step: 1153. Total energy = 17776.8590 kcal/mol (17748.4369 without restraints) Performing minimization step: 1154. Total energy = 17761.2189 kcal/mol (17732.8086 without restraints) Performing minimization step: 1155. Total energy = 17745.6060 kcal/mol (17717.2077 without restraints) Performing minimization step: 1156. Total energy = 17730.0199 kcal/mol (17701.6334 without restraints) Performing minimization step: 1157. Total energy = 17714.4604 kcal/mol (17686.0857 without restraints) Performing minimization step: 1158. Total energy = 17698.9273 kcal/mol (17670.5643 without restraints) Performing minimization step: 1159. Total energy = 17683.4208 kcal/mol (17655.0697 without restraints) Performing minimization step: 1160. Total energy = 17667.9410 kcal/mol (17639.6017 without restraints) Performing minimization step: 1161. Total energy = 17652.4875 kcal/mol (17624.1600 without restraints) Performing minimization step: 1162. Total energy = 17637.0605 kcal/mol (17608.7446 without restraints) Performing minimization step: 1163. Total energy = 17621.6596 kcal/mol (17593.3556 without restraints) Performing minimization step: 1164. Total energy = 17606.2850 kcal/mol (17577.9928 without restraints) Performing minimization step: 1165. Total energy = 17590.9367 kcal/mol (17562.6561 without restraints) Performing minimization step: 1166. Total energy = 17575.6143 kcal/mol (17547.3454 without restraints) Performing minimization step: 1167. Total energy = 17560.3179 kcal/mol (17532.0606 without restraints) Performing minimization step: 1168. Total energy = 17545.0471 kcal/mol (17516.8015 without restraints) Performing minimization step: 1169. Total energy = 17529.8031 kcal/mol (17501.5691 without restraints) Performing minimization step: 1170. Total energy = 17514.5845 kcal/mol (17486.3622 without restraints) Performing minimization step: 1171. Total energy = 17499.3920 kcal/mol (17471.1812 without restraints) Performing minimization step: 1172. Total energy = 17484.2252 kcal/mol (17456.0260 without restraints) Performing minimization step: 1173. Total energy = 17469.0840 kcal/mol (17440.8965 without restraints) Performing minimization step: 1174. Total energy = 17453.9686 kcal/mol (17425.7925 without restraints) Performing minimization step: 1175. Total energy = 17438.8785 kcal/mol (17410.7139 without restraints) Performing minimization step: 1176. Total energy = 17423.8143 kcal/mol (17395.6613 without restraints) Performing minimization step: 1177. Total energy = 17408.7759 kcal/mol (17380.6343 without restraints) Performing minimization step: 1178. Total energy = 17393.7626 kcal/mol (17365.6325 without restraints) Performing minimization step: 1179. Total energy = 17378.7749 kcal/mol (17350.6563 without restraints) Performing minimization step: 1180. Total energy = 17363.8123 kcal/mol (17335.7050 without restraints) Performing minimization step: 1181. Total energy = 17348.8751 kcal/mol (17320.7793 without restraints) Performing minimization step: 1182. Total energy = 17333.9633 kcal/mol (17305.8789 without restraints) Performing minimization step: 1183. Total energy = 17319.0766 kcal/mol (17291.0036 without restraints) Performing minimization step: 1184. Total energy = 17304.2142 kcal/mol (17276.1524 without restraints) Performing minimization step: 1185. Total energy = 17289.3770 kcal/mol (17261.3267 without restraints) Performing minimization step: 1186. Total energy = 17274.5654 kcal/mol (17246.5264 without restraints) Performing minimization step: 1187. Total energy = 17259.7786 kcal/mol (17231.7509 without restraints) Performing minimization step: 1188. Total energy = 17245.0165 kcal/mol (17217.0001 without restraints) Performing minimization step: 1189. Total energy = 17230.2793 kcal/mol (17202.2741 without restraints) Performing minimization step: 1190. Total energy = 17215.5666 kcal/mol (17187.5727 without restraints) Performing minimization step: 1191. Total energy = 17200.8788 kcal/mol (17172.8962 without restraints) Performing minimization step: 1192. Total energy = 17186.2157 kcal/mol (17158.2441 without restraints) Performing minimization step: 1193. Total energy = 17171.5770 kcal/mol (17143.6169 without restraints) Performing minimization step: 1194. Total energy = 17156.9632 kcal/mol (17129.0142 without restraints) Performing minimization step: 1195. Total energy = 17142.3737 kcal/mol (17114.4359 without restraints) Performing minimization step: 1196. Total energy = 17127.8088 kcal/mol (17099.8822 without restraints) Performing minimization step: 1197. Total energy = 17113.2674 kcal/mol (17085.3518 without restraints) Performing minimization step: 1198. Total energy = 17098.7512 kcal/mol (17070.8468 without restraints) Performing minimization step: 1199. Total energy = 17084.2590 kcal/mol (17056.3658 without restraints) Performing minimization step: 1200. Total energy = 17069.7913 kcal/mol (17041.9091 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 17055.3473 kcal/mol (17027.4761 without restraints) Performing minimization step: 1202. Total energy = 17040.9277 kcal/mol (17013.0676 without restraints) Performing minimization step: 1203. Total energy = 17026.5322 kcal/mol (16998.6831 without restraints) Performing minimization step: 1204. Total energy = 17012.1607 kcal/mol (16984.3228 without restraints) Performing minimization step: 1205. Total energy = 16997.8133 kcal/mol (16969.9863 without restraints) Performing minimization step: 1206. Total energy = 16983.4897 kcal/mol (16955.6737 without restraints) Performing minimization step: 1207. Total energy = 16969.1899 kcal/mol (16941.3849 without restraints) Performing minimization step: 1208. Total energy = 16954.9140 kcal/mol (16927.1199 without restraints) Performing minimization step: 1209. Total energy = 16940.6614 kcal/mol (16912.8781 without restraints) Performing minimization step: 1210. Total energy = 16926.4333 kcal/mol (16898.6612 without restraints) Performing minimization step: 1211. Total energy = 16912.2288 kcal/mol (16884.4676 without restraints) Performing minimization step: 1212. Total energy = 16898.0475 kcal/mol (16870.2970 without restraints) Performing minimization step: 1213. Total energy = 16883.8897 kcal/mol (16856.1501 without restraints) Performing minimization step: 1214. Total energy = 16869.7557 kcal/mol (16842.0269 without restraints) Performing minimization step: 1215. Total energy = 16855.6444 kcal/mol (16827.9265 without restraints) Performing minimization step: 1216. Total energy = 16841.5566 kcal/mol (16813.8495 without restraints) Performing minimization step: 1217. Total energy = 16827.4925 kcal/mol (16799.7964 without restraints) Performing minimization step: 1218. Total energy = 16813.4511 kcal/mol (16785.7656 without restraints) Performing minimization step: 1219. Total energy = 16799.4328 kcal/mol (16771.7580 without restraints) Performing minimization step: 1220. Total energy = 16785.4380 kcal/mol (16757.7741 without restraints) Performing minimization step: 1221. Total energy = 16771.4664 kcal/mol (16743.8132 without restraints) Performing minimization step: 1222. Total energy = 16757.5178 kcal/mol (16729.8753 without restraints) Performing minimization step: 1223. Total energy = 16743.5925 kcal/mol (16715.9608 without restraints) Performing minimization step: 1224. Total energy = 16729.6900 kcal/mol (16702.0689 without restraints) Performing minimization step: 1225. Total energy = 16715.8104 kcal/mol (16688.2000 without restraints) Performing minimization step: 1226. Total energy = 16701.9539 kcal/mol (16674.3540 without restraints) Performing minimization step: 1227. Total energy = 16688.1199 kcal/mol (16660.5307 without restraints) Performing minimization step: 1228. Total energy = 16674.3085 kcal/mol (16646.7299 without restraints) Performing minimization step: 1229. Total energy = 16660.5197 kcal/mol (16632.9518 without restraints) Performing minimization step: 1230. Total energy = 16646.7535 kcal/mol (16619.1960 without restraints) Performing minimization step: 1231. Total energy = 16633.0097 kcal/mol (16605.4631 without restraints) Performing minimization step: 1232. Total energy = 16619.2889 kcal/mol (16591.7527 without restraints) Performing minimization step: 1233. Total energy = 16605.5903 kcal/mol (16578.0646 without restraints) Performing minimization step: 1234. Total energy = 16591.9140 kcal/mol (16564.3988 without restraints) Performing minimization step: 1235. Total energy = 16578.2604 kcal/mol (16550.7558 without restraints) Performing minimization step: 1236. Total energy = 16564.6290 kcal/mol (16537.1349 without restraints) Performing minimization step: 1237. Total energy = 16551.0200 kcal/mol (16523.5364 without restraints) Performing minimization step: 1238. Total energy = 16537.4332 kcal/mol (16509.9599 without restraints) Performing minimization step: 1239. Total energy = 16523.8685 kcal/mol (16496.4057 without restraints) Performing minimization step: 1240. Total energy = 16510.3259 kcal/mol (16482.8736 without restraints) Performing minimization step: 1241. Total energy = 16496.8052 kcal/mol (16469.3633 without restraints) Performing minimization step: 1242. Total energy = 16483.3071 kcal/mol (16455.8757 without restraints) Performing minimization step: 1243. Total energy = 16469.8307 kcal/mol (16442.4096 without restraints) Performing minimization step: 1244. Total energy = 16456.3766 kcal/mol (16428.9659 without restraints) Performing minimization step: 1245. Total energy = 16442.9439 kcal/mol (16415.5432 without restraints) Performing minimization step: 1246. Total energy = 16429.5328 kcal/mol (16402.1429 without restraints) Performing minimization step: 1247. Total energy = 16416.1439 kcal/mol (16388.7640 without restraints) Performing minimization step: 1248. Total energy = 16402.7765 kcal/mol (16375.4069 without restraints) Performing minimization step: 1249. Total energy = 16389.4306 kcal/mol (16362.0714 without restraints) Performing minimization step: 1250. Total energy = 16376.1064 kcal/mol (16348.7574 without restraints) Performing minimization step: 1251. Total energy = 16362.8044 kcal/mol (16335.4658 without restraints) Performing minimization step: 1252. Total energy = 16349.5235 kcal/mol (16322.1951 without restraints) Performing minimization step: 1253. Total energy = 16336.2640 kcal/mol (16308.9458 without restraints) Performing minimization step: 1254. Total energy = 16323.0260 kcal/mol (16295.7180 without restraints) Performing minimization step: 1255. Total energy = 16309.8092 kcal/mol (16282.5113 without restraints) Performing minimization step: 1256. Total energy = 16296.6139 kcal/mol (16269.3262 without restraints) Performing minimization step: 1257. Total energy = 16283.4399 kcal/mol (16256.1624 without restraints) Performing minimization step: 1258. Total energy = 16270.2869 kcal/mol (16243.0196 without restraints) Performing minimization step: 1259. Total energy = 16257.1550 kcal/mol (16229.8976 without restraints) Performing minimization step: 1260. Total energy = 16244.0446 kcal/mol (16216.7980 without restraints) Performing minimization step: 1261. Total energy = 16230.9557 kcal/mol (16203.7187 without restraints) Performing minimization step: 1262. Total energy = 16217.8876 kcal/mol (16190.6606 without restraints) Performing minimization step: 1263. Total energy = 16204.8398 kcal/mol (16177.6230 without restraints) Performing minimization step: 1264. Total energy = 16191.8136 kcal/mol (16164.6069 without restraints) Performing minimization step: 1265. Total energy = 16178.8082 kcal/mol (16151.6115 without restraints) Performing minimization step: 1266. Total energy = 16165.8237 kcal/mol (16138.6370 without restraints) Performing minimization step: 1267. Total energy = 16152.8603 kcal/mol (16125.6836 without restraints) Performing minimization step: 1268. Total energy = 16139.9172 kcal/mol (16112.7505 without restraints) Performing minimization step: 1269. Total energy = 16126.9948 kcal/mol (16099.8381 without restraints) Performing minimization step: 1270. Total energy = 16114.0926 kcal/mol (16086.9457 without restraints) Performing minimization step: 1271. Total energy = 16101.2115 kcal/mol (16074.0747 without restraints) Performing minimization step: 1272. Total energy = 16088.3511 kcal/mol (16061.2243 without restraints) Performing minimization step: 1273. Total energy = 16075.5111 kcal/mol (16048.3941 without restraints) Performing minimization step: 1274. Total energy = 16062.6915 kcal/mol (16035.5844 without restraints) Performing minimization step: 1275. Total energy = 16049.8925 kcal/mol (16022.7953 without restraints) Performing minimization step: 1276. Total energy = 16037.1138 kcal/mol (16010.0265 without restraints) Performing minimization step: 1277. Total energy = 16024.3554 kcal/mol (15997.2779 without restraints) Performing minimization step: 1278. Total energy = 16011.6169 kcal/mol (15984.5492 without restraints) Performing minimization step: 1279. Total energy = 15998.8987 kcal/mol (15971.8409 without restraints) Performing minimization step: 1280. Total energy = 15986.2012 kcal/mol (15959.1534 without restraints) Performing minimization step: 1281. Total energy = 15973.5235 kcal/mol (15946.4854 without restraints) Performing minimization step: 1282. Total energy = 15960.8665 kcal/mol (15933.8381 without restraints) Performing minimization step: 1283. Total energy = 15948.2289 kcal/mol (15921.2102 without restraints) Performing minimization step: 1284. Total energy = 15935.6114 kcal/mol (15908.6026 without restraints) Performing minimization step: 1285. Total energy = 15923.0137 kcal/mol (15896.0144 without restraints) Performing minimization step: 1286. Total energy = 15910.4361 kcal/mol (15883.4467 without restraints) Performing minimization step: 1287. Total energy = 15897.8784 kcal/mol (15870.8987 without restraints) Performing minimization step: 1288. Total energy = 15885.3406 kcal/mol (15858.3708 without restraints) Performing minimization step: 1289. Total energy = 15872.8225 kcal/mol (15845.8621 without restraints) Performing minimization step: 1290. Total energy = 15860.3242 kcal/mol (15833.3738 without restraints) Performing minimization step: 1291. Total energy = 15847.8459 kcal/mol (15820.9049 without restraints) Performing minimization step: 1292. Total energy = 15835.3865 kcal/mol (15808.4551 without restraints) Performing minimization step: 1293. Total energy = 15822.9469 kcal/mol (15796.0251 without restraints) Performing minimization step: 1294. Total energy = 15810.5271 kcal/mol (15783.6150 without restraints) Performing minimization step: 1295. Total energy = 15798.1266 kcal/mol (15771.2241 without restraints) Performing minimization step: 1296. Total energy = 15785.7458 kcal/mol (15758.8531 without restraints) Performing minimization step: 1297. Total energy = 15773.3843 kcal/mol (15746.5009 without restraints) Performing minimization step: 1298. Total energy = 15761.0423 kcal/mol (15734.1685 without restraints) Performing minimization step: 1299. Total energy = 15748.7195 kcal/mol (15721.8553 without restraints) Performing minimization step: 1300. Total energy = 15736.4159 kcal/mol (15709.5612 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 15724.1314 kcal/mol (15697.2862 without restraints) Performing minimization step: 1302. Total energy = 15711.8659 kcal/mol (15685.0302 without restraints) Performing minimization step: 1303. Total energy = 15699.6197 kcal/mol (15672.7935 without restraints) Performing minimization step: 1304. Total energy = 15687.3926 kcal/mol (15660.5759 without restraints) Performing minimization step: 1305. Total energy = 15675.1839 kcal/mol (15648.3765 without restraints) Performing minimization step: 1306. Total energy = 15662.9947 kcal/mol (15636.1969 without restraints) Performing minimization step: 1307. Total energy = 15650.8252 kcal/mol (15624.0367 without restraints) Performing minimization step: 1308. Total energy = 15638.6741 kcal/mol (15611.8952 without restraints) Performing minimization step: 1309. Total energy = 15626.5422 kcal/mol (15599.7727 without restraints) Performing minimization step: 1310. Total energy = 15614.4288 kcal/mol (15587.6685 without restraints) Performing minimization step: 1311. Total energy = 15602.3342 kcal/mol (15575.5833 without restraints) Performing minimization step: 1312. Total energy = 15590.2582 kcal/mol (15563.5168 without restraints) Performing minimization step: 1313. Total energy = 15578.2012 kcal/mol (15551.4691 without restraints) Performing minimization step: 1314. Total energy = 15566.1627 kcal/mol (15539.4399 without restraints) Performing minimization step: 1315. Total energy = 15554.1429 kcal/mol (15527.4294 without restraints) Performing minimization step: 1316. Total energy = 15542.1413 kcal/mol (15515.4371 without restraints) Performing minimization step: 1317. Total energy = 15530.1580 kcal/mol (15503.4630 without restraints) Performing minimization step: 1318. Total energy = 15518.1938 kcal/mol (15491.5082 without restraints) Performing minimization step: 1319. Total energy = 15506.2476 kcal/mol (15479.5713 without restraints) Performing minimization step: 1320. Total energy = 15494.3199 kcal/mol (15467.6529 without restraints) Performing minimization step: 1321. Total energy = 15482.4105 kcal/mol (15455.7526 without restraints) Performing minimization step: 1322. Total energy = 15470.5193 kcal/mol (15443.8708 without restraints) Performing minimization step: 1323. Total energy = 15458.6465 kcal/mol (15432.0071 without restraints) Performing minimization step: 1324. Total energy = 15446.7919 kcal/mol (15420.1617 without restraints) Performing minimization step: 1325. Total energy = 15434.9558 kcal/mol (15408.3348 without restraints) Performing minimization step: 1326. Total energy = 15423.1375 kcal/mol (15396.5257 without restraints) Performing minimization step: 1327. Total energy = 15411.3377 kcal/mol (15384.7350 without restraints) Performing minimization step: 1328. Total energy = 15399.5558 kcal/mol (15372.9622 without restraints) Performing minimization step: 1329. Total energy = 15387.7915 kcal/mol (15361.2071 without restraints) Performing minimization step: 1330. Total energy = 15376.0454 kcal/mol (15349.4702 without restraints) Performing minimization step: 1331. Total energy = 15364.3174 kcal/mol (15337.7514 without restraints) Performing minimization step: 1332. Total energy = 15352.6070 kcal/mol (15326.0499 without restraints) Performing minimization step: 1333. Total energy = 15340.9144 kcal/mol (15314.3663 without restraints) Performing minimization step: 1334. Total energy = 15329.2396 kcal/mol (15302.7007 without restraints) Performing minimization step: 1335. Total energy = 15317.5824 kcal/mol (15291.0524 without restraints) Performing minimization step: 1336. Total energy = 15305.9434 kcal/mol (15279.4227 without restraints) Performing minimization step: 1337. Total energy = 15294.3221 kcal/mol (15267.8103 without restraints) Performing minimization step: 1338. Total energy = 15282.7181 kcal/mol (15256.2154 without restraints) Performing minimization step: 1339. Total energy = 15271.1314 kcal/mol (15244.6376 without restraints) Performing minimization step: 1340. Total energy = 15259.5623 kcal/mol (15233.0775 without restraints) Performing minimization step: 1341. Total energy = 15248.0108 kcal/mol (15221.5349 without restraints) Performing minimization step: 1342. Total energy = 15236.4773 kcal/mol (15210.0105 without restraints) Performing minimization step: 1343. Total energy = 15224.9604 kcal/mol (15198.5025 without restraints) Performing minimization step: 1344. Total energy = 15213.4613 kcal/mol (15187.0124 without restraints) Performing minimization step: 1345. Total energy = 15201.9795 kcal/mol (15175.5395 without restraints) Performing minimization step: 1346. Total energy = 15190.5150 kcal/mol (15164.0841 without restraints) Performing minimization step: 1347. Total energy = 15179.0679 kcal/mol (15152.6457 without restraints) Performing minimization step: 1348. Total energy = 15167.6374 kcal/mol (15141.2241 without restraints) Performing minimization step: 1349. Total energy = 15156.2250 kcal/mol (15129.8207 without restraints) Performing minimization step: 1350. Total energy = 15144.8296 kcal/mol (15118.4343 without restraints) Performing minimization step: 1351. Total energy = 15133.4511 kcal/mol (15107.0647 without restraints) Performing minimization step: 1352. Total energy = 15122.0897 kcal/mol (15095.7119 without restraints) Performing minimization step: 1353. Total energy = 15110.7452 kcal/mol (15084.3763 without restraints) Performing minimization step: 1354. Total energy = 15099.4171 kcal/mol (15073.0570 without restraints) Performing minimization step: 1355. Total energy = 15088.1064 kcal/mol (15061.7551 without restraints) Performing minimization step: 1356. Total energy = 15076.8123 kcal/mol (15050.4698 without restraints) Performing minimization step: 1357. Total energy = 15065.5356 kcal/mol (15039.2019 without restraints) Performing minimization step: 1358. Total energy = 15054.2754 kcal/mol (15027.9504 without restraints) Performing minimization step: 1359. Total energy = 15043.0322 kcal/mol (15016.7160 without restraints) Performing minimization step: 1360. Total energy = 15031.8054 kcal/mol (15005.4980 without restraints) Performing minimization step: 1361. Total energy = 15020.5954 kcal/mol (14994.2967 without restraints) Performing minimization step: 1362. Total energy = 15009.4020 kcal/mol (14983.1119 without restraints) Performing minimization step: 1363. Total energy = 14998.2250 kcal/mol (14971.9437 without restraints) Performing minimization step: 1364. Total energy = 14987.0648 kcal/mol (14960.7922 without restraints) Performing minimization step: 1365. Total energy = 14975.9211 kcal/mol (14949.6572 without restraints) Performing minimization step: 1366. Total energy = 14964.7939 kcal/mol (14938.5387 without restraints) Performing minimization step: 1367. Total energy = 14953.6831 kcal/mol (14927.4366 without restraints) Performing minimization step: 1368. Total energy = 14942.5890 kcal/mol (14916.3511 without restraints) Performing minimization step: 1369. Total energy = 14931.5113 kcal/mol (14905.2823 without restraints) Performing minimization step: 1370. Total energy = 14920.4500 kcal/mol (14894.2294 without restraints) Performing minimization step: 1371. Total energy = 14909.4043 kcal/mol (14883.1922 without restraints) Performing minimization step: 1372. Total energy = 14898.3751 kcal/mol (14872.1718 without restraints) Performing minimization step: 1373. Total energy = 14887.3625 kcal/mol (14861.1677 without restraints) Performing minimization step: 1374. Total energy = 14876.3661 kcal/mol (14850.1799 without restraints) Performing minimization step: 1375. Total energy = 14865.3858 kcal/mol (14839.2082 without restraints) Performing minimization step: 1376. Total energy = 14854.4212 kcal/mol (14828.2522 without restraints) Performing minimization step: 1377. Total energy = 14843.4727 kcal/mol (14817.3123 without restraints) Performing minimization step: 1378. Total energy = 14832.5406 kcal/mol (14806.3887 without restraints) Performing minimization step: 1379. Total energy = 14821.6245 kcal/mol (14795.4812 without restraints) Performing minimization step: 1380. Total energy = 14810.7243 kcal/mol (14784.5894 without restraints) Performing minimization step: 1381. Total energy = 14799.8396 kcal/mol (14773.7132 without restraints) Performing minimization step: 1382. Total energy = 14788.9709 kcal/mol (14762.8529 without restraints) Performing minimization step: 1383. Total energy = 14778.1179 kcal/mol (14752.0084 without restraints) Performing minimization step: 1384. Total energy = 14767.2805 kcal/mol (14741.1795 without restraints) Performing minimization step: 1385. Total energy = 14756.4589 kcal/mol (14730.3665 without restraints) Performing minimization step: 1386. Total energy = 14745.6537 kcal/mol (14719.5697 without restraints) Performing minimization step: 1387. Total energy = 14734.8639 kcal/mol (14708.7886 without restraints) Performing minimization step: 1388. Total energy = 14724.0899 kcal/mol (14698.0228 without restraints) Performing minimization step: 1389. Total energy = 14713.3310 kcal/mol (14687.2723 without restraints) Performing minimization step: 1390. Total energy = 14702.5881 kcal/mol (14676.5378 without restraints) Performing minimization step: 1391. Total energy = 14691.8603 kcal/mol (14665.8183 without restraints) Performing minimization step: 1392. Total energy = 14681.1482 kcal/mol (14655.1147 without restraints) Performing minimization step: 1393. Total energy = 14670.4514 kcal/mol (14644.4264 without restraints) Performing minimization step: 1394. Total energy = 14659.7701 kcal/mol (14633.7535 without restraints) Performing minimization step: 1395. Total energy = 14649.1044 kcal/mol (14623.0961 without restraints) Performing minimization step: 1396. Total energy = 14638.4534 kcal/mol (14612.4535 without restraints) Performing minimization step: 1397. Total energy = 14627.8181 kcal/mol (14601.8265 without restraints) Performing minimization step: 1398. Total energy = 14617.1981 kcal/mol (14591.2148 without restraints) Performing minimization step: 1399. Total energy = 14606.5933 kcal/mol (14580.6184 without restraints) Performing minimization step: 1400. Total energy = 14596.0041 kcal/mol (14570.0376 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 14585.4300 kcal/mol (14559.4717 without restraints) Performing minimization step: 1402. Total energy = 14574.8713 kcal/mol (14548.9214 without restraints) Performing minimization step: 1403. Total energy = 14564.3274 kcal/mol (14538.3857 without restraints) Performing minimization step: 1404. Total energy = 14553.7985 kcal/mol (14527.8650 without restraints) Performing minimization step: 1405. Total energy = 14543.2842 kcal/mol (14517.3590 without restraints) Performing minimization step: 1406. Total energy = 14532.7852 kcal/mol (14506.8683 without restraints) Performing minimization step: 1407. Total energy = 14522.3013 kcal/mol (14496.3926 without restraints) Performing minimization step: 1408. Total energy = 14511.8327 kcal/mol (14485.9322 without restraints) Performing minimization step: 1409. Total energy = 14501.3785 kcal/mol (14475.4862 without restraints) Performing minimization step: 1410. Total energy = 14490.9389 kcal/mol (14465.0549 without restraints) Performing minimization step: 1411. Total energy = 14480.5146 kcal/mol (14454.6388 without restraints) Performing minimization step: 1412. Total energy = 14470.1050 kcal/mol (14444.2375 without restraints) Performing minimization step: 1413. Total energy = 14459.7096 kcal/mol (14433.8499 without restraints) Performing minimization step: 1414. Total energy = 14449.3291 kcal/mol (14423.4777 without restraints) Performing minimization step: 1415. Total energy = 14438.9634 kcal/mol (14413.1202 without restraints) Performing minimization step: 1416. Total energy = 14428.6123 kcal/mol (14402.7772 without restraints) Performing minimization step: 1417. Total energy = 14418.2758 kcal/mol (14392.4490 without restraints) Performing minimization step: 1418. Total energy = 14407.9540 kcal/mol (14382.1353 without restraints) Performing minimization step: 1419. Total energy = 14397.6467 kcal/mol (14371.8360 without restraints) Performing minimization step: 1420. Total energy = 14387.3532 kcal/mol (14361.5508 without restraints) Performing minimization step: 1421. Total energy = 14377.0750 kcal/mol (14351.2805 without restraints) Performing minimization step: 1422. Total energy = 14366.8108 kcal/mol (14341.0245 without restraints) Performing minimization step: 1423. Total energy = 14356.5612 kcal/mol (14330.7831 without restraints) Performing minimization step: 1424. Total energy = 14346.3264 kcal/mol (14320.5563 without restraints) Performing minimization step: 1425. Total energy = 14336.1054 kcal/mol (14310.3434 without restraints) Performing minimization step: 1426. Total energy = 14325.8989 kcal/mol (14300.1449 without restraints) Performing minimization step: 1427. Total energy = 14315.7069 kcal/mol (14289.9610 without restraints) Performing minimization step: 1428. Total energy = 14305.5288 kcal/mol (14279.7911 without restraints) Performing minimization step: 1429. Total energy = 14295.3648 kcal/mol (14269.6350 without restraints) Performing minimization step: 1430. Total energy = 14285.2153 kcal/mol (14259.4935 without restraints) Performing minimization step: 1431. Total energy = 14275.0793 kcal/mol (14249.3656 without restraints) Performing minimization step: 1432. Total energy = 14264.9577 kcal/mol (14239.2519 without restraints) Performing minimization step: 1433. Total energy = 14254.8497 kcal/mol (14229.1520 without restraints) Performing minimization step: 1434. Total energy = 14244.7561 kcal/mol (14219.0663 without restraints) Performing minimization step: 1435. Total energy = 14234.6768 kcal/mol (14208.9951 without restraints) Performing minimization step: 1436. Total energy = 14224.6119 kcal/mol (14198.9383 without restraints) Performing minimization step: 1437. Total energy = 14214.5607 kcal/mol (14188.8948 without restraints) Performing minimization step: 1438. Total energy = 14204.5227 kcal/mol (14178.8646 without restraints) Performing minimization step: 1439. Total energy = 14194.4988 kcal/mol (14168.8489 without restraints) Performing minimization step: 1440. Total energy = 14184.4887 kcal/mol (14158.8467 without restraints) Performing minimization step: 1441. Total energy = 14174.4929 kcal/mol (14148.8588 without restraints) Performing minimization step: 1442. Total energy = 14164.5104 kcal/mol (14138.8842 without restraints) Performing minimization step: 1443. Total energy = 14154.5413 kcal/mol (14128.9231 without restraints) Performing minimization step: 1444. Total energy = 14144.5864 kcal/mol (14118.9761 without restraints) Performing minimization step: 1445. Total energy = 14134.6451 kcal/mol (14109.0427 without restraints) Performing minimization step: 1446. Total energy = 14124.7176 kcal/mol (14099.1231 without restraints) Performing minimization step: 1447. Total energy = 14114.8033 kcal/mol (14089.2166 without restraints) Performing minimization step: 1448. Total energy = 14104.9022 kcal/mol (14079.3233 without restraints) Performing minimization step: 1449. Total energy = 14095.0151 kcal/mol (14069.4441 without restraints) Performing minimization step: 1450. Total energy = 14085.1415 kcal/mol (14059.5785 without restraints) Performing minimization step: 1451. Total energy = 14075.2815 kcal/mol (14049.7262 without restraints) Performing minimization step: 1452. Total energy = 14065.4346 kcal/mol (14039.8872 without restraints) Performing minimization step: 1453. Total energy = 14055.6014 kcal/mol (14030.0618 without restraints) Performing minimization step: 1454. Total energy = 14045.7809 kcal/mol (14020.2491 without restraints) Performing minimization step: 1455. Total energy = 14035.9740 kcal/mol (14010.4500 without restraints) Performing minimization step: 1456. Total energy = 14026.1808 kcal/mol (14000.6646 without restraints) Performing minimization step: 1457. Total energy = 14016.4008 kcal/mol (13990.8925 without restraints) Performing minimization step: 1458. Total energy = 14006.6339 kcal/mol (13981.1333 without restraints) Performing minimization step: 1459. Total energy = 13996.8801 kcal/mol (13971.3872 without restraints) Performing minimization step: 1460. Total energy = 13987.1395 kcal/mol (13961.6544 without restraints) Performing minimization step: 1461. Total energy = 13977.4122 kcal/mol (13951.9349 without restraints) Performing minimization step: 1462. Total energy = 13967.6978 kcal/mol (13942.2283 without restraints) Performing minimization step: 1463. Total energy = 13957.9970 kcal/mol (13932.5352 without restraints) Performing minimization step: 1464. Total energy = 13948.3092 kcal/mol (13922.8552 without restraints) Performing minimization step: 1465. Total energy = 13938.6342 kcal/mol (13913.1879 without restraints) Performing minimization step: 1466. Total energy = 13928.9721 kcal/mol (13903.5335 without restraints) Performing minimization step: 1467. Total energy = 13919.3231 kcal/mol (13893.8925 without restraints) Performing minimization step: 1468. Total energy = 13909.6874 kcal/mol (13884.2642 without restraints) Performing minimization step: 1469. Total energy = 13900.0640 kcal/mol (13874.6486 without restraints) Performing minimization step: 1470. Total energy = 13890.4535 kcal/mol (13865.0457 without restraints) Performing minimization step: 1471. Total energy = 13880.8561 kcal/mol (13855.4561 without restraints) Performing minimization step: 1472. Total energy = 13871.2712 kcal/mol (13845.8788 without restraints) Performing minimization step: 1473. Total energy = 13861.6992 kcal/mol (13836.3145 without restraints) Performing minimization step: 1474. Total energy = 13852.1398 kcal/mol (13826.7627 without restraints) Performing minimization step: 1475. Total energy = 13842.5931 kcal/mol (13817.2238 without restraints) Performing minimization step: 1476. Total energy = 13833.0595 kcal/mol (13807.6978 without restraints) Performing minimization step: 1477. Total energy = 13823.5382 kcal/mol (13798.1840 without restraints) Performing minimization step: 1478. Total energy = 13814.0293 kcal/mol (13788.6829 without restraints) Performing minimization step: 1479. Total energy = 13804.5331 kcal/mol (13779.1943 without restraints) Performing minimization step: 1480. Total energy = 13795.0501 kcal/mol (13769.7189 without restraints) Performing minimization step: 1481. Total energy = 13785.5789 kcal/mol (13760.2553 without restraints) Performing minimization step: 1482. Total energy = 13776.1200 kcal/mol (13750.8041 without restraints) Performing minimization step: 1483. Total energy = 13766.6742 kcal/mol (13741.3659 without restraints) Performing minimization step: 1484. Total energy = 13757.2411 kcal/mol (13731.9402 without restraints) Performing minimization step: 1485. Total energy = 13747.8195 kcal/mol (13722.5264 without restraints) Performing minimization step: 1486. Total energy = 13738.4108 kcal/mol (13713.1251 without restraints) Performing minimization step: 1487. Total energy = 13729.0144 kcal/mol (13703.7363 without restraints) Performing minimization step: 1488. Total energy = 13719.6308 kcal/mol (13694.3604 without restraints) Performing minimization step: 1489. Total energy = 13710.2594 kcal/mol (13684.9965 without restraints) Performing minimization step: 1490. Total energy = 13700.9003 kcal/mol (13675.6450 without restraints) Performing minimization step: 1491. Total energy = 13691.5533 kcal/mol (13666.3055 without restraints) Performing minimization step: 1492. Total energy = 13682.2186 kcal/mol (13656.9785 without restraints) Performing minimization step: 1493. Total energy = 13672.8962 kcal/mol (13647.6636 without restraints) Performing minimization step: 1494. Total energy = 13663.5853 kcal/mol (13638.3602 without restraints) Performing minimization step: 1495. Total energy = 13654.2871 kcal/mol (13629.0695 without restraints) Performing minimization step: 1496. Total energy = 13645.0011 kcal/mol (13619.7910 without restraints) Performing minimization step: 1497. Total energy = 13635.7268 kcal/mol (13610.5241 without restraints) Performing minimization step: 1498. Total energy = 13626.4650 kcal/mol (13601.2700 without restraints) Performing minimization step: 1499. Total energy = 13617.2151 kcal/mol (13592.0277 without restraints) Performing minimization step: 1500. Total energy = 13607.9773 kcal/mol (13582.7973 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 13598.7512 kcal/mol (13573.5786 without restraints) Performing minimization step: 1502. Total energy = 13589.5373 kcal/mol (13564.3722 without restraints) Performing minimization step: 1503. Total energy = 13580.3352 kcal/mol (13555.1775 without restraints) Performing minimization step: 1504. Total energy = 13571.1449 kcal/mol (13545.9947 without restraints) Performing minimization step: 1505. Total energy = 13561.9665 kcal/mol (13536.8239 without restraints) Performing minimization step: 1506. Total energy = 13552.7999 kcal/mol (13527.6647 without restraints) Performing minimization step: 1507. Total energy = 13543.6451 kcal/mol (13518.5173 without restraints) Performing minimization step: 1508. Total energy = 13534.5016 kcal/mol (13509.3812 without restraints) Performing minimization step: 1509. Total energy = 13525.3702 kcal/mol (13500.2572 without restraints) Performing minimization step: 1510. Total energy = 13516.2506 kcal/mol (13491.1453 without restraints) Performing minimization step: 1511. Total energy = 13507.1430 kcal/mol (13482.0449 without restraints) Performing minimization step: 1512. Total energy = 13498.0469 kcal/mol (13472.9562 without restraints) Performing minimization step: 1513. Total energy = 13488.9619 kcal/mol (13463.8786 without restraints) Performing minimization step: 1514. Total energy = 13479.8888 kcal/mol (13454.8128 without restraints) Performing minimization step: 1515. Total energy = 13470.8277 kcal/mol (13445.7592 without restraints) Performing minimization step: 1516. Total energy = 13461.7776 kcal/mol (13436.7165 without restraints) Performing minimization step: 1517. Total energy = 13452.7394 kcal/mol (13427.6857 without restraints) Performing minimization step: 1518. Total energy = 13443.7126 kcal/mol (13418.6663 without restraints) Performing minimization step: 1519. Total energy = 13434.6973 kcal/mol (13409.6584 without restraints) Performing minimization step: 1520. Total energy = 13425.6933 kcal/mol (13400.6616 without restraints) Performing minimization step: 1521. Total energy = 13416.7013 kcal/mol (13391.6771 without restraints) Performing minimization step: 1522. Total energy = 13407.7205 kcal/mol (13382.7035 without restraints) Performing minimization step: 1523. Total energy = 13398.7515 kcal/mol (13373.7420 without restraints) Performing minimization step: 1524. Total energy = 13389.7933 kcal/mol (13364.7912 without restraints) Performing minimization step: 1525. Total energy = 13380.8467 kcal/mol (13355.8519 without restraints) Performing minimization step: 1526. Total energy = 13371.9111 kcal/mol (13346.9236 without restraints) Performing minimization step: 1527. Total energy = 13362.9868 kcal/mol (13338.0066 without restraints) Performing minimization step: 1528. Total energy = 13354.0737 kcal/mol (13329.1009 without restraints) Performing minimization step: 1529. Total energy = 13345.1718 kcal/mol (13320.2064 without restraints) Performing minimization step: 1530. Total energy = 13336.2814 kcal/mol (13311.3232 without restraints) Performing minimization step: 1531. Total energy = 13327.4019 kcal/mol (13302.4510 without restraints) Performing minimization step: 1532. Total energy = 13318.5331 kcal/mol (13293.5895 without restraints) Performing minimization step: 1533. Total energy = 13309.6759 kcal/mol (13284.7397 without restraints) Performing minimization step: 1534. Total energy = 13300.8295 kcal/mol (13275.9006 without restraints) Performing minimization step: 1535. Total energy = 13291.9945 kcal/mol (13267.0728 without restraints) Performing minimization step: 1536. Total energy = 13283.1706 kcal/mol (13258.2563 without restraints) Performing minimization step: 1537. Total energy = 13274.3575 kcal/mol (13249.4504 without restraints) Performing minimization step: 1538. Total energy = 13265.5555 kcal/mol (13240.6557 without restraints) Performing minimization step: 1539. Total energy = 13256.7645 kcal/mol (13231.8720 without restraints) Performing minimization step: 1540. Total energy = 13247.9845 kcal/mol (13223.0992 without restraints) Performing minimization step: 1541. Total energy = 13239.2154 kcal/mol (13214.3374 without restraints) Performing minimization step: 1542. Total energy = 13230.4570 kcal/mol (13205.5863 without restraints) Performing minimization step: 1543. Total energy = 13221.7097 kcal/mol (13196.8462 without restraints) Performing minimization step: 1544. Total energy = 13212.9731 kcal/mol (13188.1168 without restraints) Performing minimization step: 1545. Total energy = 13204.2475 kcal/mol (13179.3984 without restraints) Performing minimization step: 1546. Total energy = 13195.5328 kcal/mol (13170.6910 without restraints) Performing minimization step: 1547. Total energy = 13186.8285 kcal/mol (13161.9939 without restraints) Performing minimization step: 1548. Total energy = 13178.1352 kcal/mol (13153.3078 without restraints) Performing minimization step: 1549. Total energy = 13169.4526 kcal/mol (13144.6324 without restraints) Performing minimization step: 1550. Total energy = 13160.7803 kcal/mol (13135.9673 without restraints) Performing minimization step: 1551. Total energy = 13152.1190 kcal/mol (13127.3133 without restraints) Performing minimization step: 1552. Total energy = 13143.4683 kcal/mol (13118.6698 without restraints) Performing minimization step: 1553. Total energy = 13134.8283 kcal/mol (13110.0370 without restraints) Performing minimization step: 1554. Total energy = 13126.1987 kcal/mol (13101.4146 without restraints) Performing minimization step: 1555. Total energy = 13117.5800 kcal/mol (13092.8030 without restraints) Performing minimization step: 1556. Total energy = 13108.9711 kcal/mol (13084.2014 without restraints) Performing minimization step: 1557. Total energy = 13100.3735 kcal/mol (13075.6109 without restraints) Performing minimization step: 1558. Total energy = 13091.7866 kcal/mol (13067.0312 without restraints) Performing minimization step: 1559. Total energy = 13083.2099 kcal/mol (13058.4617 without restraints) Performing minimization step: 1560. Total energy = 13074.6436 kcal/mol (13049.9025 without restraints) Performing minimization step: 1561. Total energy = 13066.0878 kcal/mol (13041.3539 without restraints) Performing minimization step: 1562. Total energy = 13057.5429 kcal/mol (13032.8161 without restraints) Performing minimization step: 1563. Total energy = 13049.0077 kcal/mol (13024.2882 without restraints) Performing minimization step: 1564. Total energy = 13040.4832 kcal/mol (13015.7708 without restraints) Performing minimization step: 1565. Total energy = 13031.9690 kcal/mol (13007.2636 without restraints) Performing minimization step: 1566. Total energy = 13023.4649 kcal/mol (12998.7668 without restraints) Performing minimization step: 1567. Total energy = 13014.9713 kcal/mol (12990.2804 without restraints) Performing minimization step: 1568. Total energy = 13006.4879 kcal/mol (12981.8040 without restraints) Performing minimization step: 1569. Total energy = 12998.0146 kcal/mol (12973.3379 without restraints) Performing minimization step: 1570. Total energy = 12989.5516 kcal/mol (12964.8820 without restraints) Performing minimization step: 1571. Total energy = 12981.0988 kcal/mol (12956.4363 without restraints) Performing minimization step: 1572. Total energy = 12972.6566 kcal/mol (12948.0013 without restraints) Performing minimization step: 1573. Total energy = 12964.2242 kcal/mol (12939.5759 without restraints) Performing minimization step: 1574. Total energy = 12955.8020 kcal/mol (12931.1609 without restraints) Performing minimization step: 1575. Total energy = 12947.3905 kcal/mol (12922.7564 without restraints) Performing minimization step: 1576. Total energy = 12938.9886 kcal/mol (12914.3617 without restraints) Performing minimization step: 1577. Total energy = 12930.5971 kcal/mol (12905.9773 without restraints) Performing minimization step: 1578. Total energy = 12922.2155 kcal/mol (12897.6027 without restraints) Performing minimization step: 1579. Total energy = 12913.8436 kcal/mol (12889.2379 without restraints) Performing minimization step: 1580. Total energy = 12905.4819 kcal/mol (12880.8834 without restraints) Performing minimization step: 1581. Total energy = 12897.1303 kcal/mol (12872.5388 without restraints) Performing minimization step: 1582. Total energy = 12888.7889 kcal/mol (12864.2046 without restraints) Performing minimization step: 1583. Total energy = 12880.4573 kcal/mol (12855.8800 without restraints) Performing minimization step: 1584. Total energy = 12872.1355 kcal/mol (12847.5653 without restraints) Performing minimization step: 1585. Total energy = 12863.8237 kcal/mol (12839.2607 without restraints) Performing minimization step: 1586. Total energy = 12855.5220 kcal/mol (12830.9659 without restraints) Performing minimization step: 1587. Total energy = 12847.2296 kcal/mol (12822.6807 without restraints) Performing minimization step: 1588. Total energy = 12838.9475 kcal/mol (12814.4057 without restraints) Performing minimization step: 1589. Total energy = 12830.6750 kcal/mol (12806.1400 without restraints) Performing minimization step: 1590. Total energy = 12822.4120 kcal/mol (12797.8841 without restraints) Performing minimization step: 1591. Total energy = 12814.1591 kcal/mol (12789.6383 without restraints) Performing minimization step: 1592. Total energy = 12805.9156 kcal/mol (12781.4018 without restraints) Performing minimization step: 1593. Total energy = 12797.6825 kcal/mol (12773.1759 without restraints) Performing minimization step: 1594. Total energy = 12789.4589 kcal/mol (12764.9592 without restraints) Performing minimization step: 1595. Total energy = 12781.2449 kcal/mol (12756.7523 without restraints) Performing minimization step: 1596. Total energy = 12773.0405 kcal/mol (12748.5550 without restraints) Performing minimization step: 1597. Total energy = 12764.8458 kcal/mol (12740.3671 without restraints) Performing minimization step: 1598. Total energy = 12756.6611 kcal/mol (12732.1895 without restraints) Performing minimization step: 1599. Total energy = 12748.4855 kcal/mol (12724.0209 without restraints) Performing minimization step: 1600. Total energy = 12740.3197 kcal/mol (12715.8620 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 12732.1631 kcal/mol (12707.7126 without restraints) Performing minimization step: 1602. Total energy = 12724.0165 kcal/mol (12699.5730 without restraints) Performing minimization step: 1603. Total energy = 12715.8793 kcal/mol (12691.4426 without restraints) Performing minimization step: 1604. Total energy = 12707.7514 kcal/mol (12683.3219 without restraints) Performing minimization step: 1605. Total energy = 12699.6333 kcal/mol (12675.2107 without restraints) Performing minimization step: 1606. Total energy = 12691.5251 kcal/mol (12667.1096 without restraints) Performing minimization step: 1607. Total energy = 12683.4261 kcal/mol (12659.0176 without restraints) Performing minimization step: 1608. Total energy = 12675.3365 kcal/mol (12650.9350 without restraints) Performing minimization step: 1609. Total energy = 12667.2561 kcal/mol (12642.8616 without restraints) Performing minimization step: 1610. Total energy = 12659.1852 kcal/mol (12634.7976 without restraints) Performing minimization step: 1611. Total energy = 12651.1232 kcal/mol (12626.7425 without restraints) Performing minimization step: 1612. Total energy = 12643.0707 kcal/mol (12618.6968 without restraints) Performing minimization step: 1613. Total energy = 12635.0276 kcal/mol (12610.6609 without restraints) Performing minimization step: 1614. Total energy = 12626.9939 kcal/mol (12602.6342 without restraints) Performing minimization step: 1615. Total energy = 12618.9695 kcal/mol (12594.6168 without restraints) Performing minimization step: 1616. Total energy = 12610.9546 kcal/mol (12586.6089 without restraints) Performing minimization step: 1617. Total energy = 12602.9486 kcal/mol (12578.6098 without restraints) Performing minimization step: 1618. Total energy = 12594.9520 kcal/mol (12570.6202 without restraints) Performing minimization step: 1619. Total energy = 12586.9646 kcal/mol (12562.6398 without restraints) Performing minimization step: 1620. Total energy = 12578.9865 kcal/mol (12554.6686 without restraints) Performing minimization step: 1621. Total energy = 12571.0172 kcal/mol (12546.7062 without restraints) Performing minimization step: 1622. Total energy = 12563.0573 kcal/mol (12538.7533 without restraints) Performing minimization step: 1623. Total energy = 12555.1063 kcal/mol (12530.8093 without restraints) Performing minimization step: 1624. Total energy = 12547.1645 kcal/mol (12522.8743 without restraints) Performing minimization step: 1625. Total energy = 12539.2318 kcal/mol (12514.9486 without restraints) Performing minimization step: 1626. Total energy = 12531.3083 kcal/mol (12507.0321 without restraints) Performing minimization step: 1627. Total energy = 12523.3939 kcal/mol (12499.1244 without restraints) Performing minimization step: 1628. Total energy = 12515.4886 kcal/mol (12491.2261 without restraints) Performing minimization step: 1629. Total energy = 12507.5919 kcal/mol (12483.3365 without restraints) Performing minimization step: 1630. Total energy = 12499.7051 kcal/mol (12475.4565 without restraints) Performing minimization step: 1631. Total energy = 12491.8265 kcal/mol (12467.5849 without restraints) Performing minimization step: 1632. Total energy = 12483.9574 kcal/mol (12459.7227 without restraints) Performing minimization step: 1633. Total energy = 12476.0966 kcal/mol (12451.8688 without restraints) Performing minimization step: 1634. Total energy = 12468.2450 kcal/mol (12444.0242 without restraints) Performing minimization step: 1635. Total energy = 12460.4024 kcal/mol (12436.1883 without restraints) Performing minimization step: 1636. Total energy = 12452.5689 kcal/mol (12428.3619 without restraints) Performing minimization step: 1637. Total energy = 12444.7443 kcal/mol (12420.5442 without restraints) Performing minimization step: 1638. Total energy = 12436.9284 kcal/mol (12412.7352 without restraints) Performing minimization step: 1639. Total energy = 12429.1212 kcal/mol (12404.9348 without restraints) Performing minimization step: 1640. Total energy = 12421.3227 kcal/mol (12397.1433 without restraints) Performing minimization step: 1641. Total energy = 12413.5333 kcal/mol (12389.3608 without restraints) Performing minimization step: 1642. Total energy = 12405.7526 kcal/mol (12381.5870 without restraints) Performing minimization step: 1643. Total energy = 12397.9807 kcal/mol (12373.8220 without restraints) Performing minimization step: 1644. Total energy = 12390.2177 kcal/mol (12366.0659 without restraints) Performing minimization step: 1645. Total energy = 12382.4634 kcal/mol (12358.3185 without restraints) Performing minimization step: 1646. Total energy = 12374.7177 kcal/mol (12350.5796 without restraints) Performing minimization step: 1647. Total energy = 12366.9804 kcal/mol (12342.8492 without restraints) Performing minimization step: 1648. Total energy = 12359.2523 kcal/mol (12335.1280 without restraints) Performing minimization step: 1649. Total energy = 12351.5327 kcal/mol (12327.4153 without restraints) Performing minimization step: 1650. Total energy = 12343.8213 kcal/mol (12319.7107 without restraints) Performing minimization step: 1651. Total energy = 12336.1191 kcal/mol (12312.0155 without restraints) Performing minimization step: 1652. Total energy = 12328.4255 kcal/mol (12304.3287 without restraints) Performing minimization step: 1653. Total energy = 12320.7402 kcal/mol (12296.6503 without restraints) Performing minimization step: 1654. Total energy = 12313.0636 kcal/mol (12288.9806 without restraints) Performing minimization step: 1655. Total energy = 12305.3955 kcal/mol (12281.3194 without restraints) Performing minimization step: 1656. Total energy = 12297.7360 kcal/mol (12273.6667 without restraints) Performing minimization step: 1657. Total energy = 12290.0849 kcal/mol (12266.0225 without restraints) Performing minimization step: 1658. Total energy = 12282.4419 kcal/mol (12258.3861 without restraints) Performing minimization step: 1659. Total energy = 12274.8076 kcal/mol (12250.7589 without restraints) Performing minimization step: 1660. Total energy = 12267.1823 kcal/mol (12243.1404 without restraints) Performing minimization step: 1661. Total energy = 12259.5654 kcal/mol (12235.5303 without restraints) Performing minimization step: 1662. Total energy = 12251.9566 kcal/mol (12227.9284 without restraints) Performing minimization step: 1663. Total energy = 12244.3563 kcal/mol (12220.3350 without restraints) Performing minimization step: 1664. Total energy = 12236.7646 kcal/mol (12212.7501 without restraints) Performing minimization step: 1665. Total energy = 12229.1811 kcal/mol (12205.1734 without restraints) Performing minimization step: 1666. Total energy = 12221.6060 kcal/mol (12197.6052 without restraints) Performing minimization step: 1667. Total energy = 12214.0394 kcal/mol (12190.0454 without restraints) Performing minimization step: 1668. Total energy = 12206.4811 kcal/mol (12182.4940 without restraints) Performing minimization step: 1669. Total energy = 12198.9310 kcal/mol (12174.9507 without restraints) Performing minimization step: 1670. Total energy = 12191.3894 kcal/mol (12167.4159 without restraints) Performing minimization step: 1671. Total energy = 12183.8554 kcal/mol (12159.8888 without restraints) Performing minimization step: 1672. Total energy = 12176.3304 kcal/mol (12152.3706 without restraints) Performing minimization step: 1673. Total energy = 12168.8136 kcal/mol (12144.8606 without restraints) Performing minimization step: 1674. Total energy = 12161.3046 kcal/mol (12137.3585 without restraints) Performing minimization step: 1675. Total energy = 12153.8041 kcal/mol (12129.8648 without restraints) Performing minimization step: 1676. Total energy = 12146.3113 kcal/mol (12122.3787 without restraints) Performing minimization step: 1677. Total energy = 12138.8272 kcal/mol (12114.9016 without restraints) Performing minimization step: 1678. Total energy = 12131.3511 kcal/mol (12107.4322 without restraints) Performing minimization step: 1679. Total energy = 12123.8832 kcal/mol (12099.9711 without restraints) Performing minimization step: 1680. Total energy = 12116.4231 kcal/mol (12092.5179 without restraints) Performing minimization step: 1681. Total energy = 12108.9718 kcal/mol (12085.0734 without restraints) Performing minimization step: 1682. Total energy = 12101.5285 kcal/mol (12077.6371 without restraints) Performing minimization step: 1683. Total energy = 12094.0933 kcal/mol (12070.2086 without restraints) Performing minimization step: 1684. Total energy = 12086.6661 kcal/mol (12062.7881 without restraints) Performing minimization step: 1685. Total energy = 12079.2475 kcal/mol (12055.3766 without restraints) Performing minimization step: 1686. Total energy = 12071.8366 kcal/mol (12047.9722 without restraints) Performing minimization step: 1687. Total energy = 12064.4334 kcal/mol (12040.5759 without restraints) Performing minimization step: 1688. Total energy = 12057.0382 kcal/mol (12033.1874 without restraints) Performing minimization step: 1689. Total energy = 12049.6510 kcal/mol (12025.8071 without restraints) Performing minimization step: 1690. Total energy = 12042.2724 kcal/mol (12018.4353 without restraints) Performing minimization step: 1691. Total energy = 12034.9012 kcal/mol (12011.0707 without restraints) Performing minimization step: 1692. Total energy = 12027.5380 kcal/mol (12003.7145 without restraints) Performing minimization step: 1693. Total energy = 12020.1826 kcal/mol (11996.3658 without restraints) Performing minimization step: 1694. Total energy = 12012.8352 kcal/mol (11989.0253 without restraints) Performing minimization step: 1695. Total energy = 12005.4965 kcal/mol (11981.6933 without restraints) Performing minimization step: 1696. Total energy = 11998.1648 kcal/mol (11974.3684 without restraints) Performing minimization step: 1697. Total energy = 11990.8413 kcal/mol (11967.0520 without restraints) Performing minimization step: 1698. Total energy = 11983.5259 kcal/mol (11959.7431 without restraints) Performing minimization step: 1699. Total energy = 11976.2178 kcal/mol (11952.4418 without restraints) Performing minimization step: 1700. Total energy = 11968.9178 kcal/mol (11945.1486 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 11961.6257 kcal/mol (11937.8632 without restraints) Performing minimization step: 1702. Total energy = 11954.3410 kcal/mol (11930.5852 without restraints) Performing minimization step: 1703. Total energy = 11947.0643 kcal/mol (11923.3155 without restraints) Performing minimization step: 1704. Total energy = 11939.7952 kcal/mol (11916.0531 without restraints) Performing minimization step: 1705. Total energy = 11932.5342 kcal/mol (11908.7989 without restraints) Performing minimization step: 1706. Total energy = 11925.2804 kcal/mol (11901.5519 without restraints) Performing minimization step: 1707. Total energy = 11918.0346 kcal/mol (11894.3129 without restraints) Performing minimization step: 1708. Total energy = 11910.7965 kcal/mol (11887.0815 without restraints) Performing minimization step: 1709. Total energy = 11903.5660 kcal/mol (11879.8578 without restraints) Performing minimization step: 1710. Total energy = 11896.3433 kcal/mol (11872.6419 without restraints) Performing minimization step: 1711. Total energy = 11889.1282 kcal/mol (11865.4335 without restraints) Performing minimization step: 1712. Total energy = 11881.9206 kcal/mol (11858.2326 without restraints) Performing minimization step: 1713. Total energy = 11874.7208 kcal/mol (11851.0397 without restraints) Performing minimization step: 1714. Total energy = 11867.5286 kcal/mol (11843.8543 without restraints) Performing minimization step: 1715. Total energy = 11860.3443 kcal/mol (11836.6767 without restraints) Performing minimization step: 1716. Total energy = 11853.1675 kcal/mol (11829.5066 without restraints) Performing minimization step: 1717. Total energy = 11845.9983 kcal/mol (11822.3443 without restraints) Performing minimization step: 1718. Total energy = 11838.8368 kcal/mol (11815.1896 without restraints) Performing minimization step: 1719. Total energy = 11831.6825 kcal/mol (11808.0422 without restraints) Performing minimization step: 1720. Total energy = 11824.5363 kcal/mol (11800.9025 without restraints) Performing minimization step: 1721. Total energy = 11817.3969 kcal/mol (11793.7699 without restraints) Performing minimization step: 1722. Total energy = 11810.2656 kcal/mol (11786.6452 without restraints) Performing minimization step: 1723. Total energy = 11803.1415 kcal/mol (11779.5280 without restraints) Performing minimization step: 1724. Total energy = 11796.0248 kcal/mol (11772.4181 without restraints) Performing minimization step: 1725. Total energy = 11788.9157 kcal/mol (11765.3157 without restraints) Performing minimization step: 1726. Total energy = 11781.8140 kcal/mol (11758.2207 without restraints) Performing minimization step: 1727. Total energy = 11774.7197 kcal/mol (11751.1334 without restraints) Performing minimization step: 1728. Total energy = 11767.6331 kcal/mol (11744.0533 without restraints) Performing minimization step: 1729. Total energy = 11760.5537 kcal/mol (11736.9807 without restraints) Performing minimization step: 1730. Total energy = 11753.4817 kcal/mol (11729.9154 without restraints) Performing minimization step: 1731. Total energy = 11746.4170 kcal/mol (11722.8574 without restraints) Performing minimization step: 1732. Total energy = 11739.3596 kcal/mol (11715.8068 without restraints) Performing minimization step: 1733. Total energy = 11732.3097 kcal/mol (11708.7636 without restraints) Performing minimization step: 1734. Total energy = 11725.2670 kcal/mol (11701.7276 without restraints) Performing minimization step: 1735. Total energy = 11718.2313 kcal/mol (11694.6986 without restraints) Performing minimization step: 1736. Total energy = 11711.2031 kcal/mol (11687.6772 without restraints) Performing minimization step: 1737. Total energy = 11704.1825 kcal/mol (11680.6635 without restraints) Performing minimization step: 1738. Total energy = 11697.1690 kcal/mol (11673.6567 without restraints) Performing minimization step: 1739. Total energy = 11690.1627 kcal/mol (11666.6572 without restraints) Performing minimization step: 1740. Total energy = 11683.1634 kcal/mol (11659.6644 without restraints) Performing minimization step: 1741. Total energy = 11676.1718 kcal/mol (11652.6797 without restraints) Performing minimization step: 1742. Total energy = 11669.1875 kcal/mol (11645.7021 without restraints) Performing minimization step: 1743. Total energy = 11662.2104 kcal/mol (11638.7318 without restraints) Performing minimization step: 1744. Total energy = 11655.2404 kcal/mol (11631.7685 without restraints) Performing minimization step: 1745. Total energy = 11648.2779 kcal/mol (11624.8127 without restraints) Performing minimization step: 1746. Total energy = 11641.3221 kcal/mol (11617.8637 without restraints) Performing minimization step: 1747. Total energy = 11634.3738 kcal/mol (11610.9221 without restraints) Performing minimization step: 1748. Total energy = 11627.4326 kcal/mol (11603.9876 without restraints) Performing minimization step: 1749. Total energy = 11620.4989 kcal/mol (11597.0607 without restraints) Performing minimization step: 1750. Total energy = 11613.5720 kcal/mol (11590.1404 without restraints) Performing minimization step: 1751. Total energy = 11606.6521 kcal/mol (11583.2273 without restraints) Performing minimization step: 1752. Total energy = 11599.7395 kcal/mol (11576.3215 without restraints) Performing minimization step: 1753. Total energy = 11592.8345 kcal/mol (11569.4232 without restraints) Performing minimization step: 1754. Total energy = 11585.9358 kcal/mol (11562.5313 without restraints) Performing minimization step: 1755. Total energy = 11579.0438 kcal/mol (11555.6459 without restraints) Performing minimization step: 1756. Total energy = 11572.1596 kcal/mol (11548.7685 without restraints) Performing minimization step: 1757. Total energy = 11565.2821 kcal/mol (11541.8977 without restraints) Performing minimization step: 1758. Total energy = 11558.4114 kcal/mol (11535.0337 without restraints) Performing minimization step: 1759. Total energy = 11551.5480 kcal/mol (11528.1770 without restraints) Performing minimization step: 1760. Total energy = 11544.6917 kcal/mol (11521.3273 without restraints) Performing minimization step: 1761. Total energy = 11537.8423 kcal/mol (11514.4847 without restraints) Performing minimization step: 1762. Total energy = 11530.9998 kcal/mol (11507.6490 without restraints) Performing minimization step: 1763. Total energy = 11524.1643 kcal/mol (11500.8201 without restraints) Performing minimization step: 1764. Total energy = 11517.3359 kcal/mol (11493.9985 without restraints) Performing minimization step: 1765. Total energy = 11510.5144 kcal/mol (11487.1837 without restraints) Performing minimization step: 1766. Total energy = 11503.7001 kcal/mol (11480.3761 without restraints) Performing minimization step: 1767. Total energy = 11496.8925 kcal/mol (11473.5752 without restraints) Performing minimization step: 1768. Total energy = 11490.0922 kcal/mol (11466.7816 without restraints) Performing minimization step: 1769. Total energy = 11483.2985 kcal/mol (11459.9946 without restraints) Performing minimization step: 1770. Total energy = 11476.5116 kcal/mol (11453.2146 without restraints) Performing minimization step: 1771. Total energy = 11469.7319 kcal/mol (11446.4413 without restraints) Performing minimization step: 1772. Total energy = 11462.9585 kcal/mol (11439.6747 without restraints) Performing minimization step: 1773. Total energy = 11456.1915 kcal/mol (11432.9145 without restraints) Performing minimization step: 1774. Total energy = 11449.4316 kcal/mol (11426.1613 without restraints) Performing minimization step: 1775. Total energy = 11442.6786 kcal/mol (11419.4150 without restraints) Performing minimization step: 1776. Total energy = 11435.9327 kcal/mol (11412.6758 without restraints) Performing minimization step: 1777. Total energy = 11429.1933 kcal/mol (11405.9431 without restraints) Performing minimization step: 1778. Total energy = 11422.4611 kcal/mol (11399.2176 without restraints) Performing minimization step: 1779. Total energy = 11415.7354 kcal/mol (11392.4986 without restraints) Performing minimization step: 1780. Total energy = 11409.0166 kcal/mol (11385.7865 without restraints) Performing minimization step: 1781. Total energy = 11402.3045 kcal/mol (11379.0811 without restraints) Performing minimization step: 1782. Total energy = 11395.5989 kcal/mol (11372.3822 without restraints) Performing minimization step: 1783. Total energy = 11388.9003 kcal/mol (11365.6903 without restraints) Performing minimization step: 1784. Total energy = 11382.2084 kcal/mol (11359.0051 without restraints) Performing minimization step: 1785. Total energy = 11375.5232 kcal/mol (11352.3266 without restraints) Performing minimization step: 1786. Total energy = 11368.8447 kcal/mol (11345.6548 without restraints) Performing minimization step: 1787. Total energy = 11362.1728 kcal/mol (11338.9896 without restraints) Performing minimization step: 1788. Total energy = 11355.5075 kcal/mol (11332.3311 without restraints) Performing minimization step: 1789. Total energy = 11348.8489 kcal/mol (11325.6791 without restraints) Performing minimization step: 1790. Total energy = 11342.1960 kcal/mol (11319.0329 without restraints) Performing minimization step: 1791. Total energy = 11335.5508 kcal/mol (11312.3944 without restraints) Performing minimization step: 1792. Total energy = 11328.9121 kcal/mol (11305.7624 without restraints) Performing minimization step: 1793. Total energy = 11322.2799 kcal/mol (11299.1370 without restraints) Performing minimization step: 1794. Total energy = 11315.6543 kcal/mol (11292.5180 without restraints) Performing minimization step: 1795. Total energy = 11309.0354 kcal/mol (11285.9057 without restraints) Performing minimization step: 1796. Total energy = 11302.4230 kcal/mol (11279.3000 without restraints) Performing minimization step: 1797. Total energy = 11295.8170 kcal/mol (11272.7009 without restraints) Performing minimization step: 1798. Total energy = 11289.2177 kcal/mol (11266.1081 without restraints) Performing minimization step: 1799. Total energy = 11282.6251 kcal/mol (11259.5223 without restraints) Performing minimization step: 1800. Total energy = 11276.0390 kcal/mol (11252.9428 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 11269.4594 kcal/mol (11246.3699 without restraints) Performing minimization step: 1802. Total energy = 11262.8859 kcal/mol (11239.8030 without restraints) Performing minimization step: 1803. Total energy = 11256.3190 kcal/mol (11233.2429 without restraints) Performing minimization step: 1804. Total energy = 11249.7589 kcal/mol (11226.6895 without restraints) Performing minimization step: 1805. Total energy = 11243.2051 kcal/mol (11220.1424 without restraints) Performing minimization step: 1806. Total energy = 11236.6581 kcal/mol (11213.6020 without restraints) Performing minimization step: 1807. Total energy = 11230.1171 kcal/mol (11207.0677 without restraints) Performing minimization step: 1808. Total energy = 11223.5825 kcal/mol (11200.5398 without restraints) Performing minimization step: 1809. Total energy = 11217.0543 kcal/mol (11194.0183 without restraints) Performing minimization step: 1810. Total energy = 11210.5327 kcal/mol (11187.5035 without restraints) Performing minimization step: 1811. Total energy = 11204.0177 kcal/mol (11180.9951 without restraints) Performing minimization step: 1812. Total energy = 11197.5095 kcal/mol (11174.4935 without restraints) Performing minimization step: 1813. Total energy = 11191.0072 kcal/mol (11167.9979 without restraints) Performing minimization step: 1814. Total energy = 11184.5112 kcal/mol (11161.5086 without restraints) Performing minimization step: 1815. Total energy = 11178.0216 kcal/mol (11155.0257 without restraints) Performing minimization step: 1816. Total energy = 11171.5384 kcal/mol (11148.5493 without restraints) Performing minimization step: 1817. Total energy = 11165.0617 kcal/mol (11142.0791 without restraints) Performing minimization step: 1818. Total energy = 11158.5910 kcal/mol (11135.6152 without restraints) Performing minimization step: 1819. Total energy = 11152.1266 kcal/mol (11129.1575 without restraints) Performing minimization step: 1820. Total energy = 11145.6683 kcal/mol (11122.7059 without restraints) Performing minimization step: 1821. Total energy = 11139.2167 kcal/mol (11116.2610 without restraints) Performing minimization step: 1822. Total energy = 11132.7710 kcal/mol (11109.8221 without restraints) Performing minimization step: 1823. Total energy = 11126.3321 kcal/mol (11103.3895 without restraints) Performing minimization step: 1824. Total energy = 11119.8991 kcal/mol (11096.9634 without restraints) Performing minimization step: 1825. Total energy = 11113.4728 kcal/mol (11090.5437 without restraints) Performing minimization step: 1826. Total energy = 11107.0518 kcal/mol (11084.1293 without restraints) Performing minimization step: 1827. Total energy = 11100.6375 kcal/mol (11077.7218 without restraints) Performing minimization step: 1828. Total energy = 11094.2296 kcal/mol (11071.3206 without restraints) Performing minimization step: 1829. Total energy = 11087.8281 kcal/mol (11064.9258 without restraints) Performing minimization step: 1830. Total energy = 11081.4326 kcal/mol (11058.5369 without restraints) Performing minimization step: 1831. Total energy = 11075.0431 kcal/mol (11052.1541 without restraints) Performing minimization step: 1832. Total energy = 11068.6603 kcal/mol (11045.7782 without restraints) Performing minimization step: 1833. Total energy = 11062.2836 kcal/mol (11039.4079 without restraints) Performing minimization step: 1834. Total energy = 11055.9128 kcal/mol (11033.0440 without restraints) Performing minimization step: 1835. Total energy = 11049.5484 kcal/mol (11026.6860 without restraints) Performing minimization step: 1836. Total energy = 11043.1899 kcal/mol (11020.3343 without restraints) Performing minimization step: 1837. Total energy = 11036.8374 kcal/mol (11013.9884 without restraints) Performing minimization step: 1838. Total energy = 11030.4910 kcal/mol (11007.6487 without restraints) Performing minimization step: 1839. Total energy = 11024.1508 kcal/mol (11001.3152 without restraints) Performing minimization step: 1840. Total energy = 11017.8167 kcal/mol (10994.9877 without restraints) Performing minimization step: 1841. Total energy = 11011.4885 kcal/mol (10988.6662 without restraints) Performing minimization step: 1842. Total energy = 11005.1663 kcal/mol (10982.3507 without restraints) Performing minimization step: 1843. Total energy = 10998.8503 kcal/mol (10976.0412 without restraints) Performing minimization step: 1844. Total energy = 10992.5404 kcal/mol (10969.7381 without restraints) Performing minimization step: 1845. Total energy = 10986.2368 kcal/mol (10963.4413 without restraints) Performing minimization step: 1846. Total energy = 10979.9392 kcal/mol (10957.1502 without restraints) Performing minimization step: 1847. Total energy = 10973.6475 kcal/mol (10950.8654 without restraints) Performing minimization step: 1848. Total energy = 10967.3622 kcal/mol (10944.5867 without restraints) Performing minimization step: 1849. Total energy = 10961.0826 kcal/mol (10938.3137 without restraints) Performing minimization step: 1850. Total energy = 10954.8088 kcal/mol (10932.0464 without restraints) Performing minimization step: 1851. Total energy = 10948.5412 kcal/mol (10925.7856 without restraints) Performing minimization step: 1852. Total energy = 10942.2795 kcal/mol (10919.5306 without restraints) Performing minimization step: 1853. Total energy = 10936.0236 kcal/mol (10913.2814 without restraints) Performing minimization step: 1854. Total energy = 10929.7738 kcal/mol (10907.0382 without restraints) Performing minimization step: 1855. Total energy = 10923.5299 kcal/mol (10900.8010 without restraints) Performing minimization step: 1856. Total energy = 10917.2919 kcal/mol (10894.5697 without restraints) Performing minimization step: 1857. Total energy = 10911.0600 kcal/mol (10888.3444 without restraints) Performing minimization step: 1858. Total energy = 10904.8338 kcal/mol (10882.1249 without restraints) Performing minimization step: 1859. Total energy = 10898.6138 kcal/mol (10875.9115 without restraints) Performing minimization step: 1860. Total energy = 10892.3998 kcal/mol (10869.7041 without restraints) Performing minimization step: 1861. Total energy = 10886.1912 kcal/mol (10863.5023 without restraints) Performing minimization step: 1862. Total energy = 10879.9886 kcal/mol (10857.3064 without restraints) Performing minimization step: 1863. Total energy = 10873.7921 kcal/mol (10851.1165 without restraints) Performing minimization step: 1864. Total energy = 10867.6013 kcal/mol (10844.9324 without restraints) Performing minimization step: 1865. Total energy = 10861.4162 kcal/mol (10838.7539 without restraints) Performing minimization step: 1866. Total energy = 10855.2371 kcal/mol (10832.5814 without restraints) Performing minimization step: 1867. Total energy = 10849.0638 kcal/mol (10826.4149 without restraints) Performing minimization step: 1868. Total energy = 10842.8964 kcal/mol (10820.2542 without restraints) Performing minimization step: 1869. Total energy = 10836.7353 kcal/mol (10814.0997 without restraints) Performing minimization step: 1870. Total energy = 10830.5796 kcal/mol (10807.9506 without restraints) Performing minimization step: 1871. Total energy = 10824.4297 kcal/mol (10801.8074 without restraints) Performing minimization step: 1872. Total energy = 10818.2853 kcal/mol (10795.6696 without restraints) Performing minimization step: 1873. Total energy = 10812.1467 kcal/mol (10789.5377 without restraints) Performing minimization step: 1874. Total energy = 10806.0139 kcal/mol (10783.4116 without restraints) Performing minimization step: 1875. Total energy = 10799.8871 kcal/mol (10777.2915 without restraints) Performing minimization step: 1876. Total energy = 10793.7658 kcal/mol (10771.1768 without restraints) Performing minimization step: 1877. Total energy = 10787.6505 kcal/mol (10765.0682 without restraints) Performing minimization step: 1878. Total energy = 10781.5407 kcal/mol (10758.9649 without restraints) Performing minimization step: 1879. Total energy = 10775.4365 kcal/mol (10752.8676 without restraints) Performing minimization step: 1880. Total energy = 10769.3379 kcal/mol (10746.7754 without restraints) Performing minimization step: 1881. Total energy = 10763.2450 kcal/mol (10740.6891 without restraints) Performing minimization step: 1882. Total energy = 10757.1573 kcal/mol (10734.6081 without restraints) Performing minimization step: 1883. Total energy = 10751.0753 kcal/mol (10728.5329 without restraints) Performing minimization step: 1884. Total energy = 10744.9996 kcal/mol (10722.4638 without restraints) Performing minimization step: 1885. Total energy = 10738.9293 kcal/mol (10716.4001 without restraints) Performing minimization step: 1886. Total energy = 10732.8648 kcal/mol (10710.3424 without restraints) Performing minimization step: 1887. Total energy = 10726.8062 kcal/mol (10704.2904 without restraints) Performing minimization step: 1888. Total energy = 10720.7531 kcal/mol (10698.2439 without restraints) Performing minimization step: 1889. Total energy = 10714.7054 kcal/mol (10692.2029 without restraints) Performing minimization step: 1890. Total energy = 10708.6634 kcal/mol (10686.1674 without restraints) Performing minimization step: 1891. Total energy = 10702.6270 kcal/mol (10680.1379 without restraints) Performing minimization step: 1892. Total energy = 10696.5964 kcal/mol (10674.1138 without restraints) Performing minimization step: 1893. Total energy = 10690.5711 kcal/mol (10668.0952 without restraints) Performing minimization step: 1894. Total energy = 10684.5514 kcal/mol (10662.0821 without restraints) Performing minimization step: 1895. Total energy = 10678.5370 kcal/mol (10656.0744 without restraints) Performing minimization step: 1896. Total energy = 10672.5286 kcal/mol (10650.0727 without restraints) Performing minimization step: 1897. Total energy = 10666.5260 kcal/mol (10644.0768 without restraints) Performing minimization step: 1898. Total energy = 10660.5279 kcal/mol (10638.0852 without restraints) Performing minimization step: 1899. Total energy = 10654.5364 kcal/mol (10632.1004 without restraints) Performing minimization step: 1900. Total energy = 10648.5504 kcal/mol (10626.1211 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 10642.5697 kcal/mol (10620.1468 without restraints) Performing minimization step: 1902. Total energy = 10636.5945 kcal/mol (10614.1784 without restraints) Performing minimization step: 1903. Total energy = 10630.6247 kcal/mol (10608.2152 without restraints) Performing minimization step: 1904. Total energy = 10624.6602 kcal/mol (10602.2575 without restraints) Performing minimization step: 1905. Total energy = 10618.7013 kcal/mol (10596.3052 without restraints) Performing minimization step: 1906. Total energy = 10612.7478 kcal/mol (10590.3583 without restraints) Performing minimization step: 1907. Total energy = 10606.7999 kcal/mol (10584.4170 without restraints) Performing minimization step: 1908. Total energy = 10600.8573 kcal/mol (10578.4812 without restraints) Performing minimization step: 1909. Total energy = 10594.9202 kcal/mol (10572.5506 without restraints) Performing minimization step: 1910. Total energy = 10588.9885 kcal/mol (10566.6258 without restraints) Performing minimization step: 1911. Total energy = 10583.0626 kcal/mol (10560.7064 without restraints) Performing minimization step: 1912. Total energy = 10577.1420 kcal/mol (10554.7925 without restraints) Performing minimization step: 1913. Total energy = 10571.2268 kcal/mol (10548.8839 without restraints) Performing minimization step: 1914. Total energy = 10565.3166 kcal/mol (10542.9803 without restraints) Performing minimization step: 1915. Total energy = 10559.4119 kcal/mol (10537.0822 without restraints) Performing minimization step: 1916. Total energy = 10553.5126 kcal/mol (10531.1896 without restraints) Performing minimization step: 1917. Total energy = 10547.6184 kcal/mol (10525.3021 without restraints) Performing minimization step: 1918. Total energy = 10541.7300 kcal/mol (10519.4203 without restraints) Performing minimization step: 1919. Total energy = 10535.8465 kcal/mol (10513.5433 without restraints) Performing minimization step: 1920. Total energy = 10529.9688 kcal/mol (10507.6724 without restraints) Performing minimization step: 1921. Total energy = 10524.0963 kcal/mol (10501.8065 without restraints) Performing minimization step: 1922. Total energy = 10518.2291 kcal/mol (10495.9460 without restraints) Performing minimization step: 1923. Total energy = 10512.3672 kcal/mol (10490.0908 without restraints) Performing minimization step: 1924. Total energy = 10506.5104 kcal/mol (10484.2405 without restraints) Performing minimization step: 1925. Total energy = 10500.6593 kcal/mol (10478.3960 without restraints) Performing minimization step: 1926. Total energy = 10494.8137 kcal/mol (10472.5571 without restraints) Performing minimization step: 1927. Total energy = 10488.9732 kcal/mol (10466.7234 without restraints) Performing minimization step: 1928. Total energy = 10483.1375 kcal/mol (10460.8942 without restraints) Performing minimization step: 1929. Total energy = 10477.3074 kcal/mol (10455.0707 without restraints) Performing minimization step: 1930. Total energy = 10471.4830 kcal/mol (10449.2530 without restraints) Performing minimization step: 1931. Total energy = 10465.6640 kcal/mol (10443.4406 without restraints) Performing minimization step: 1932. Total energy = 10459.8499 kcal/mol (10437.6332 without restraints) Performing minimization step: 1933. Total energy = 10454.0409 kcal/mol (10431.8308 without restraints) Performing minimization step: 1934. Total energy = 10448.2370 kcal/mol (10426.0336 without restraints) Performing minimization step: 1935. Total energy = 10442.4383 kcal/mol (10420.2415 without restraints) Performing minimization step: 1936. Total energy = 10436.6451 kcal/mol (10414.4549 without restraints) Performing minimization step: 1937. Total energy = 10430.8568 kcal/mol (10408.6732 without restraints) Performing minimization step: 1938. Total energy = 10425.0737 kcal/mol (10402.8968 without restraints) Performing minimization step: 1939. Total energy = 10419.2961 kcal/mol (10397.1259 without restraints) Performing minimization step: 1940. Total energy = 10413.5240 kcal/mol (10391.3603 without restraints) Performing minimization step: 1941. Total energy = 10407.7564 kcal/mol (10385.5994 without restraints) Performing minimization step: 1942. Total energy = 10401.9937 kcal/mol (10379.8434 without restraints) Performing minimization step: 1943. Total energy = 10396.2367 kcal/mol (10374.0930 without restraints) Performing minimization step: 1944. Total energy = 10390.4846 kcal/mol (10368.3475 without restraints) Performing minimization step: 1945. Total energy = 10384.7381 kcal/mol (10362.6076 without restraints) Performing minimization step: 1946. Total energy = 10378.9962 kcal/mol (10356.8722 without restraints) Performing minimization step: 1947. Total energy = 10373.2597 kcal/mol (10351.1425 without restraints) Performing minimization step: 1948. Total energy = 10367.5281 kcal/mol (10345.4175 without restraints) Performing minimization step: 1949. Total energy = 10361.8016 kcal/mol (10339.6977 without restraints) Performing minimization step: 1950. Total energy = 10356.0808 kcal/mol (10333.9835 without restraints) Performing minimization step: 1951. Total energy = 10350.3647 kcal/mol (10328.2740 without restraints) Performing minimization step: 1952. Total energy = 10344.6536 kcal/mol (10322.5695 without restraints) Performing minimization step: 1953. Total energy = 10338.9479 kcal/mol (10316.8704 without restraints) Performing minimization step: 1954. Total energy = 10333.2467 kcal/mol (10311.1757 without restraints) Performing minimization step: 1955. Total energy = 10327.5501 kcal/mol (10305.4859 without restraints) Performing minimization step: 1956. Total energy = 10321.8588 kcal/mol (10299.8013 without restraints) Performing minimization step: 1957. Total energy = 10316.1727 kcal/mol (10294.1218 without restraints) Performing minimization step: 1958. Total energy = 10310.4918 kcal/mol (10288.4476 without restraints) Performing minimization step: 1959. Total energy = 10304.8161 kcal/mol (10282.7783 without restraints) Performing minimization step: 1960. Total energy = 10299.1453 kcal/mol (10277.1142 without restraints) Performing minimization step: 1961. Total energy = 10293.4795 kcal/mol (10271.4551 without restraints) Performing minimization step: 1962. Total energy = 10287.8183 kcal/mol (10265.8006 without restraints) Performing minimization step: 1963. Total energy = 10282.1624 kcal/mol (10260.1512 without restraints) Performing minimization step: 1964. Total energy = 10276.5118 kcal/mol (10254.5074 without restraints) Performing minimization step: 1965. Total energy = 10270.8659 kcal/mol (10248.8680 without restraints) Performing minimization step: 1966. Total energy = 10265.2248 kcal/mol (10243.2335 without restraints) Performing minimization step: 1967. Total energy = 10259.5887 kcal/mol (10237.6040 without restraints) Performing minimization step: 1968. Total energy = 10253.9574 kcal/mol (10231.9794 without restraints) Performing minimization step: 1969. Total energy = 10248.3314 kcal/mol (10226.3601 without restraints) Performing minimization step: 1970. Total energy = 10242.7102 kcal/mol (10220.7454 without restraints) Performing minimization step: 1971. Total energy = 10237.0938 kcal/mol (10215.1356 without restraints) Performing minimization step: 1972. Total energy = 10231.4824 kcal/mol (10209.5308 without restraints) Performing minimization step: 1973. Total energy = 10225.8755 kcal/mol (10203.9305 without restraints) Performing minimization step: 1974. Total energy = 10220.2740 kcal/mol (10198.3358 without restraints) Performing minimization step: 1975. Total energy = 10214.6774 kcal/mol (10192.7457 without restraints) Performing minimization step: 1976. Total energy = 10209.0857 kcal/mol (10187.1605 without restraints) Performing minimization step: 1977. Total energy = 10203.4986 kcal/mol (10181.5801 without restraints) Performing minimization step: 1978. Total energy = 10197.9164 kcal/mol (10176.0045 without restraints) Performing minimization step: 1979. Total energy = 10192.3395 kcal/mol (10170.4344 without restraints) Performing minimization step: 1980. Total energy = 10186.7675 kcal/mol (10164.8689 without restraints) Performing minimization step: 1981. Total energy = 10181.2000 kcal/mol (10159.3080 without restraints) Performing minimization step: 1982. Total energy = 10175.6372 kcal/mol (10153.7517 without restraints) Performing minimization step: 1983. Total energy = 10170.0792 kcal/mol (10148.2005 without restraints) Performing minimization step: 1984. Total energy = 10164.5266 kcal/mol (10142.6545 without restraints) Performing minimization step: 1985. Total energy = 10158.9785 kcal/mol (10137.1130 without restraints) Performing minimization step: 1986. Total energy = 10153.4350 kcal/mol (10131.5761 without restraints) Performing minimization step: 1987. Total energy = 10147.8962 kcal/mol (10126.0439 without restraints) Performing minimization step: 1988. Total energy = 10142.3626 kcal/mol (10120.5169 without restraints) Performing minimization step: 1989. Total energy = 10136.8336 kcal/mol (10114.9946 without restraints) Performing minimization step: 1990. Total energy = 10131.3094 kcal/mol (10109.4770 without restraints) Performing minimization step: 1991. Total energy = 10125.7898 kcal/mol (10103.9639 without restraints) Performing minimization step: 1992. Total energy = 10120.2755 kcal/mol (10098.4562 without restraints) Performing minimization step: 1993. Total energy = 10114.7656 kcal/mol (10092.9529 without restraints) Performing minimization step: 1994. Total energy = 10109.2602 kcal/mol (10087.4542 without restraints) Performing minimization step: 1995. Total energy = 10103.7598 kcal/mol (10081.9604 without restraints) Performing minimization step: 1996. Total energy = 10098.2642 kcal/mol (10076.4713 without restraints) Performing minimization step: 1997. Total energy = 10092.7731 kcal/mol (10070.9869 without restraints) Performing minimization step: 1998. Total energy = 10087.2869 kcal/mol (10065.5073 without restraints) Performing minimization step: 1999. Total energy = 10081.8055 kcal/mol (10060.0326 without restraints) Performing minimization step: 2000. Total energy = 10076.3293 kcal/mol (10054.5630 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 10070.8572 kcal/mol (10049.0974 without restraints) Performing minimization step: 2002. Total energy = 10065.3896 kcal/mol (10043.6365 without restraints) Performing minimization step: 2003. Total energy = 10059.9266 kcal/mol (10038.1800 without restraints) Performing minimization step: 2004. Total energy = 10054.4683 kcal/mol (10032.7283 without restraints) Performing minimization step: 2005. Total energy = 10049.0147 kcal/mol (10027.2814 without restraints) Performing minimization step: 2006. Total energy = 10043.5659 kcal/mol (10021.8390 without restraints) Performing minimization step: 2007. Total energy = 10038.1215 kcal/mol (10016.4013 without restraints) Performing minimization step: 2008. Total energy = 10032.6822 kcal/mol (10010.9687 without restraints) Performing minimization step: 2009. Total energy = 10027.2477 kcal/mol (10005.5409 without restraints) Performing minimization step: 2010. Total energy = 10021.8175 kcal/mol (10000.1172 without restraints) Performing minimization step: 2011. Total energy = 10016.3919 kcal/mol (9994.6982 without restraints) Performing minimization step: 2012. Total energy = 10010.9710 kcal/mol (9989.2839 without restraints) Performing minimization step: 2013. Total energy = 10005.5546 kcal/mol (9983.8741 without restraints) Performing minimization step: 2014. Total energy = 10000.1429 kcal/mol (9978.4689 without restraints) Performing minimization step: 2015. Total energy = 9994.7356 kcal/mol (9973.0683 without restraints) Performing minimization step: 2016. Total energy = 9989.3333 kcal/mol (9967.6727 without restraints) Performing minimization step: 2017. Total energy = 9983.9353 kcal/mol (9962.2812 without restraints) Performing minimization step: 2018. Total energy = 9978.5418 kcal/mol (9956.8943 without restraints) Performing minimization step: 2019. Total energy = 9973.1527 kcal/mol (9951.5118 without restraints) Performing minimization step: 2020. Total energy = 9967.7684 kcal/mol (9946.1340 without restraints) Performing minimization step: 2021. Total energy = 9962.3886 kcal/mol (9940.7608 without restraints) Performing minimization step: 2022. Total energy = 9957.0133 kcal/mol (9935.3922 without restraints) Performing minimization step: 2023. Total energy = 9951.6432 kcal/mol (9930.0287 without restraints) Performing minimization step: 2024. Total energy = 9946.2768 kcal/mol (9924.6689 without restraints) Performing minimization step: 2025. Total energy = 9940.9154 kcal/mol (9919.3140 without restraints) Performing minimization step: 2026. Total energy = 9935.5585 kcal/mol (9913.9637 without restraints) Performing minimization step: 2027. Total energy = 9930.2067 kcal/mol (9908.6185 without restraints) Performing minimization step: 2028. Total energy = 9924.8581 kcal/mol (9903.2764 without restraints) Performing minimization step: 2029. Total energy = 9919.5142 kcal/mol (9897.9391 without restraints) Performing minimization step: 2030. Total energy = 9914.1752 kcal/mol (9892.6068 without restraints) Performing minimization step: 2031. Total energy = 9908.8407 kcal/mol (9887.2790 without restraints) Performing minimization step: 2032. Total energy = 9903.5106 kcal/mol (9881.9553 without restraints) Performing minimization step: 2033. Total energy = 9898.1849 kcal/mol (9876.6362 without restraints) Performing minimization step: 2034. Total energy = 9892.8638 kcal/mol (9871.3218 without restraints) Performing minimization step: 2035. Total energy = 9887.5470 kcal/mol (9866.0115 without restraints) Performing minimization step: 2036. Total energy = 9882.2343 kcal/mol (9860.7053 without restraints) Performing minimization step: 2037. Total energy = 9876.9265 kcal/mol (9855.4042 without restraints) Performing minimization step: 2038. Total energy = 9871.6230 kcal/mol (9850.1072 without restraints) Performing minimization step: 2039. Total energy = 9866.3238 kcal/mol (9844.8147 without restraints) Performing minimization step: 2040. Total energy = 9861.0291 kcal/mol (9839.5265 without restraints) Performing minimization step: 2041. Total energy = 9855.7388 kcal/mol (9834.2427 without restraints) Performing minimization step: 2042. Total energy = 9850.4531 kcal/mol (9828.9637 without restraints) Performing minimization step: 2043. Total energy = 9845.1715 kcal/mol (9823.6886 without restraints) Performing minimization step: 2044. Total energy = 9839.8943 kcal/mol (9818.4181 without restraints) Performing minimization step: 2045. Total energy = 9834.6216 kcal/mol (9813.1519 without restraints) Performing minimization step: 2046. Total energy = 9829.3539 kcal/mol (9807.8908 without restraints) Performing minimization step: 2047. Total energy = 9824.0899 kcal/mol (9802.6334 without restraints) Performing minimization step: 2048. Total energy = 9818.8302 kcal/mol (9797.3803 without restraints) Performing minimization step: 2049. Total energy = 9813.5749 kcal/mol (9792.1316 without restraints) Performing minimization step: 2050. Total energy = 9808.3235 kcal/mol (9786.8868 without restraints) Performing minimization step: 2051. Total energy = 9803.0765 kcal/mol (9781.6464 without restraints) Performing minimization step: 2052. Total energy = 9797.8344 kcal/mol (9776.4109 without restraints) Performing minimization step: 2053. Total energy = 9792.5967 kcal/mol (9771.1795 without restraints) Performing minimization step: 2054. Total energy = 9787.3630 kcal/mol (9765.9526 without restraints) Performing minimization step: 2055. Total energy = 9782.1337 kcal/mol (9760.7297 without restraints) Performing minimization step: 2056. Total energy = 9776.9086 kcal/mol (9755.5112 without restraints) Performing minimization step: 2057. Total energy = 9771.6879 kcal/mol (9750.2971 without restraints) Performing minimization step: 2058. Total energy = 9766.4715 kcal/mol (9745.0873 without restraints) Performing minimization step: 2059. Total energy = 9761.2593 kcal/mol (9739.8817 without restraints) Performing minimization step: 2060. Total energy = 9756.0514 kcal/mol (9734.6804 without restraints) Performing minimization step: 2061. Total energy = 9750.8480 kcal/mol (9729.4836 without restraints) Performing minimization step: 2062. Total energy = 9745.6487 kcal/mol (9724.2908 without restraints) Performing minimization step: 2063. Total energy = 9740.4538 kcal/mol (9719.1026 without restraints) Performing minimization step: 2064. Total energy = 9735.2631 kcal/mol (9713.9183 without restraints) Performing minimization step: 2065. Total energy = 9730.0763 kcal/mol (9708.7382 without restraints) Performing minimization step: 2066. Total energy = 9724.8940 kcal/mol (9703.5622 without restraints) Performing minimization step: 2067. Total energy = 9719.7157 kcal/mol (9698.3905 without restraints) Performing minimization step: 2068. Total energy = 9714.5420 kcal/mol (9693.2235 without restraints) Performing minimization step: 2069. Total energy = 9709.3723 kcal/mol (9688.0604 without restraints) Performing minimization step: 2070. Total energy = 9704.2065 kcal/mol (9682.9011 without restraints) Performing minimization step: 2071. Total energy = 9699.0460 kcal/mol (9677.7472 without restraints) Performing minimization step: 2072. Total energy = 9693.8890 kcal/mol (9672.5967 without restraints) Performing minimization step: 2073. Total energy = 9688.7359 kcal/mol (9667.4502 without restraints) Performing minimization step: 2074. Total energy = 9683.5875 kcal/mol (9662.3084 without restraints) Performing minimization step: 2075. Total energy = 9678.4431 kcal/mol (9657.1705 without restraints) Performing minimization step: 2076. Total energy = 9673.3025 kcal/mol (9652.0364 without restraints) Performing minimization step: 2077. Total energy = 9668.1665 kcal/mol (9646.9068 without restraints) Performing minimization step: 2078. Total energy = 9663.0342 kcal/mol (9641.7813 without restraints) Performing minimization step: 2079. Total energy = 9657.9069 kcal/mol (9636.6605 without restraints) Performing minimization step: 2080. Total energy = 9652.7842 kcal/mol (9631.5444 without restraints) Performing minimization step: 2081. Total energy = 9647.6648 kcal/mol (9626.4315 without restraints) Performing minimization step: 2082. Total energy = 9642.5496 kcal/mol (9621.3229 without restraints) Performing minimization step: 2083. Total energy = 9637.4383 kcal/mol (9616.2181 without restraints) Performing minimization step: 2084. Total energy = 9632.3311 kcal/mol (9611.1174 without restraints) Performing minimization step: 2085. Total energy = 9627.2280 kcal/mol (9606.0208 without restraints) Performing minimization step: 2086. Total energy = 9622.1289 kcal/mol (9600.9283 without restraints) Performing minimization step: 2087. Total energy = 9617.0341 kcal/mol (9595.8403 without restraints) Performing minimization step: 2088. Total energy = 9611.9432 kcal/mol (9590.7555 without restraints) Performing minimization step: 2089. Total energy = 9606.8562 kcal/mol (9585.6753 without restraints) Performing minimization step: 2090. Total energy = 9601.7734 kcal/mol (9580.5992 without restraints) Performing minimization step: 2091. Total energy = 9596.6950 kcal/mol (9575.5272 without restraints) Performing minimization step: 2092. Total energy = 9591.6211 kcal/mol (9570.4598 without restraints) Performing minimization step: 2093. Total energy = 9586.5504 kcal/mol (9565.3957 without restraints) Performing minimization step: 2094. Total energy = 9581.4838 kcal/mol (9560.3356 without restraints) Performing minimization step: 2095. Total energy = 9576.4217 kcal/mol (9555.2801 without restraints) Performing minimization step: 2096. Total energy = 9571.3634 kcal/mol (9550.2282 without restraints) Performing minimization step: 2097. Total energy = 9566.3093 kcal/mol (9545.1808 without restraints) Performing minimization step: 2098. Total energy = 9561.2594 kcal/mol (9540.1374 without restraints) Performing minimization step: 2099. Total energy = 9556.2129 kcal/mol (9535.0974 without restraints) Performing minimization step: 2100. Total energy = 9551.1710 kcal/mol (9530.0620 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 9546.1330 kcal/mol (9525.0305 without restraints) Performing minimization step: 2102. Total energy = 9541.0987 kcal/mol (9520.0028 without restraints) Performing minimization step: 2103. Total energy = 9536.0687 kcal/mol (9514.9793 without restraints) Performing minimization step: 2104. Total energy = 9531.0425 kcal/mol (9509.9597 without restraints) Performing minimization step: 2105. Total energy = 9526.0201 kcal/mol (9504.9438 without restraints) Performing minimization step: 2106. Total energy = 9521.0019 kcal/mol (9499.9321 without restraints) Performing minimization step: 2107. Total energy = 9515.9875 kcal/mol (9494.9241 without restraints) Performing minimization step: 2108. Total energy = 9510.9772 kcal/mol (9489.9205 without restraints) Performing minimization step: 2109. Total energy = 9505.9710 kcal/mol (9484.9208 without restraints) Performing minimization step: 2110. Total energy = 9500.9687 kcal/mol (9479.9249 without restraints) Performing minimization step: 2111. Total energy = 9495.9701 kcal/mol (9474.9328 without restraints) Performing minimization step: 2112. Total energy = 9490.9754 kcal/mol (9469.9447 without restraints) Performing minimization step: 2113. Total energy = 9485.9848 kcal/mol (9464.9607 without restraints) Performing minimization step: 2114. Total energy = 9480.9981 kcal/mol (9459.9805 without restraints) Performing minimization step: 2115. Total energy = 9476.0155 kcal/mol (9455.0044 without restraints) Performing minimization step: 2116. Total energy = 9471.0369 kcal/mol (9450.0323 without restraints) Performing minimization step: 2117. Total energy = 9466.0618 kcal/mol (9445.0636 without restraints) Performing minimization step: 2118. Total energy = 9461.0904 kcal/mol (9440.0988 without restraints) Performing minimization step: 2119. Total energy = 9456.1232 kcal/mol (9435.1382 without restraints) Performing minimization step: 2120. Total energy = 9451.1597 kcal/mol (9430.1812 without restraints) Performing minimization step: 2121. Total energy = 9446.1997 kcal/mol (9425.2276 without restraints) Performing minimization step: 2122. Total energy = 9441.2443 kcal/mol (9420.2788 without restraints) Performing minimization step: 2123. Total energy = 9436.2929 kcal/mol (9415.3339 without restraints) Performing minimization step: 2124. Total energy = 9431.3449 kcal/mol (9410.3926 without restraints) Performing minimization step: 2125. Total energy = 9426.4010 kcal/mol (9405.4550 without restraints) Performing minimization step: 2126. Total energy = 9421.4610 kcal/mol (9400.5217 without restraints) Performing minimization step: 2127. Total energy = 9416.5250 kcal/mol (9395.5920 without restraints) Performing minimization step: 2128. Total energy = 9411.5926 kcal/mol (9390.6662 without restraints) Performing minimization step: 2129. Total energy = 9406.6641 kcal/mol (9385.7441 without restraints) Performing minimization step: 2130. Total energy = 9401.7391 kcal/mol (9380.8257 without restraints) Performing minimization step: 2131. Total energy = 9396.8183 kcal/mol (9375.9114 without restraints) Performing minimization step: 2132. Total energy = 9391.9015 kcal/mol (9371.0010 without restraints) Performing minimization step: 2133. Total energy = 9386.9882 kcal/mol (9366.0943 without restraints) Performing minimization step: 2134. Total energy = 9382.0786 kcal/mol (9361.1912 without restraints) Performing minimization step: 2135. Total energy = 9377.1734 kcal/mol (9356.2925 without restraints) Performing minimization step: 2136. Total energy = 9372.2712 kcal/mol (9351.3968 without restraints) Performing minimization step: 2137. Total energy = 9367.3733 kcal/mol (9346.5054 without restraints) Performing minimization step: 2138. Total energy = 9362.4791 kcal/mol (9341.6177 without restraints) Performing minimization step: 2139. Total energy = 9357.5886 kcal/mol (9336.7337 without restraints) Performing minimization step: 2140. Total energy = 9352.7016 kcal/mol (9331.8528 without restraints) Performing minimization step: 2141. Total energy = 9347.8184 kcal/mol (9326.9765 without restraints) Performing minimization step: 2142. Total energy = 9342.9391 kcal/mol (9322.1036 without restraints) Performing minimization step: 2143. Total energy = 9338.0636 kcal/mol (9317.2348 without restraints) Performing minimization step: 2144. Total energy = 9333.1921 kcal/mol (9312.3696 without restraints) Performing minimization step: 2145. Total energy = 9328.3240 kcal/mol (9307.5080 without restraints) Performing minimization step: 2146. Total energy = 9323.4597 kcal/mol (9302.6502 without restraints) Performing minimization step: 2147. Total energy = 9318.5992 kcal/mol (9297.7962 without restraints) Performing minimization step: 2148. Total energy = 9313.7427 kcal/mol (9292.9464 without restraints) Performing minimization step: 2149. Total energy = 9308.8901 kcal/mol (9288.1000 without restraints) Performing minimization step: 2150. Total energy = 9304.0408 kcal/mol (9283.2571 without restraints) Performing minimization step: 2151. Total energy = 9299.1947 kcal/mol (9278.4176 without restraints) Performing minimization step: 2152. Total energy = 9294.3525 kcal/mol (9273.5819 without restraints) Performing minimization step: 2153. Total energy = 9289.5142 kcal/mol (9268.7501 without restraints) Performing minimization step: 2154. Total energy = 9284.6795 kcal/mol (9263.9219 without restraints) Performing minimization step: 2155. Total energy = 9279.8488 kcal/mol (9259.0976 without restraints) Performing minimization step: 2156. Total energy = 9275.0214 kcal/mol (9254.2767 without restraints) Performing minimization step: 2157. Total energy = 9270.1977 kcal/mol (9249.4595 without restraints) Performing minimization step: 2158. Total energy = 9265.3783 kcal/mol (9244.6466 without restraints) Performing minimization step: 2159. Total energy = 9260.5618 kcal/mol (9239.8365 without restraints) Performing minimization step: 2160. Total energy = 9255.7491 kcal/mol (9235.0303 without restraints) Performing minimization step: 2161. Total energy = 9250.9397 kcal/mol (9230.2273 without restraints) Performing minimization step: 2162. Total energy = 9246.1344 kcal/mol (9225.4288 without restraints) Performing minimization step: 2163. Total energy = 9241.3330 kcal/mol (9220.6336 without restraints) Performing minimization step: 2164. Total energy = 9236.5349 kcal/mol (9215.8419 without restraints) Performing minimization step: 2165. Total energy = 9231.7402 kcal/mol (9211.0538 without restraints) Performing minimization step: 2166. Total energy = 9226.9494 kcal/mol (9206.2694 without restraints) Performing minimization step: 2167. Total energy = 9222.1622 kcal/mol (9201.4886 without restraints) Performing minimization step: 2168. Total energy = 9217.3787 kcal/mol (9196.7116 without restraints) Performing minimization step: 2169. Total energy = 9212.5986 kcal/mol (9191.9380 without restraints) Performing minimization step: 2170. Total energy = 9207.8221 kcal/mol (9187.1679 without restraints) Performing minimization step: 2171. Total energy = 9203.0491 kcal/mol (9182.4014 without restraints) Performing minimization step: 2172. Total energy = 9198.2800 kcal/mol (9177.6388 without restraints) Performing minimization step: 2173. Total energy = 9193.5141 kcal/mol (9172.8793 without restraints) Performing minimization step: 2174. Total energy = 9188.7522 kcal/mol (9168.1238 without restraints) Performing minimization step: 2175. Total energy = 9183.9934 kcal/mol (9163.3715 without restraints) Performing minimization step: 2176. Total energy = 9179.2386 kcal/mol (9158.6233 without restraints) Performing minimization step: 2177. Total energy = 9174.4877 kcal/mol (9153.8787 without restraints) Performing minimization step: 2178. Total energy = 9169.7397 kcal/mol (9149.1371 without restraints) Performing minimization step: 2179. Total energy = 9164.9953 kcal/mol (9144.3992 without restraints) Performing minimization step: 2180. Total energy = 9160.2546 kcal/mol (9139.6650 without restraints) Performing minimization step: 2181. Total energy = 9155.5169 kcal/mol (9134.9337 without restraints) Performing minimization step: 2182. Total energy = 9150.7833 kcal/mol (9130.2066 without restraints) Performing minimization step: 2183. Total energy = 9146.0529 kcal/mol (9125.4825 without restraints) Performing minimization step: 2184. Total energy = 9141.3261 kcal/mol (9120.7623 without restraints) Performing minimization step: 2185. Total energy = 9136.6026 kcal/mol (9116.0452 without restraints) Performing minimization step: 2186. Total energy = 9131.8828 kcal/mol (9111.3318 without restraints) Performing minimization step: 2187. Total energy = 9127.1666 kcal/mol (9106.6221 without restraints) Performing minimization step: 2188. Total energy = 9122.4539 kcal/mol (9101.9157 without restraints) Performing minimization step: 2189. Total energy = 9117.7443 kcal/mol (9097.2126 without restraints) Performing minimization step: 2190. Total energy = 9113.0391 kcal/mol (9092.5139 without restraints) Performing minimization step: 2191. Total energy = 9108.3369 kcal/mol (9087.8180 without restraints) Performing minimization step: 2192. Total energy = 9103.6380 kcal/mol (9083.1256 without restraints) Performing minimization step: 2193. Total energy = 9098.9426 kcal/mol (9078.4366 without restraints) Performing minimization step: 2194. Total energy = 9094.2507 kcal/mol (9073.7512 without restraints) Performing minimization step: 2195. Total energy = 9089.5623 kcal/mol (9069.0691 without restraints) Performing minimization step: 2196. Total energy = 9084.8774 kcal/mol (9064.3907 without restraints) Performing minimization step: 2197. Total energy = 9080.1955 kcal/mol (9059.7153 without restraints) Performing minimization step: 2198. Total energy = 9075.5173 kcal/mol (9055.0434 without restraints) Performing minimization step: 2199. Total energy = 9070.8426 kcal/mol (9050.3752 without restraints) Performing minimization step: 2200. Total energy = 9066.1711 kcal/mol (9045.7101 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 9061.5035 kcal/mol (9041.0489 without restraints) Performing minimization step: 2202. Total energy = 9056.8399 kcal/mol (9036.3917 without restraints) Performing minimization step: 2203. Total energy = 9052.1787 kcal/mol (9031.7371 without restraints) Performing minimization step: 2204. Total energy = 9047.5211 kcal/mol (9027.0856 without restraints) Performing minimization step: 2205. Total energy = 9042.8670 kcal/mol (9022.4379 without restraints) Performing minimization step: 2206. Total energy = 9038.2158 kcal/mol (9017.7931 without restraints) Performing minimization step: 2207. Total energy = 9033.5682 kcal/mol (9013.1521 without restraints) Performing minimization step: 2208. Total energy = 9028.9244 kcal/mol (9008.5147 without restraints) Performing minimization step: 2209. Total energy = 9024.2835 kcal/mol (9003.8801 without restraints) Performing minimization step: 2210. Total energy = 9019.6463 kcal/mol (8999.2494 without restraints) Performing minimization step: 2211. Total energy = 9015.0124 kcal/mol (8994.6219 without restraints) Performing minimization step: 2212. Total energy = 9010.3818 kcal/mol (8989.9977 without restraints) Performing minimization step: 2213. Total energy = 9005.7546 kcal/mol (8985.3769 without restraints) Performing minimization step: 2214. Total energy = 9001.1308 kcal/mol (8980.7595 without restraints) Performing minimization step: 2215. Total energy = 8996.5104 kcal/mol (8976.1454 without restraints) Performing minimization step: 2216. Total energy = 8991.8934 kcal/mol (8971.5349 without restraints) Performing minimization step: 2217. Total energy = 8987.2796 kcal/mol (8966.9276 without restraints) Performing minimization step: 2218. Total energy = 8982.6692 kcal/mol (8962.3235 without restraints) Performing minimization step: 2219. Total energy = 8978.0621 kcal/mol (8957.7227 without restraints) Performing minimization step: 2220. Total energy = 8973.4582 kcal/mol (8953.1252 without restraints) Performing minimization step: 2221. Total energy = 8968.8577 kcal/mol (8948.5312 without restraints) Performing minimization step: 2222. Total energy = 8964.2605 kcal/mol (8943.9403 without restraints) Performing minimization step: 2223. Total energy = 8959.6670 kcal/mol (8939.3532 without restraints) Performing minimization step: 2224. Total energy = 8955.0764 kcal/mol (8934.7691 without restraints) Performing minimization step: 2225. Total energy = 8950.4892 kcal/mol (8930.1882 without restraints) Performing minimization step: 2226. Total energy = 8945.9051 kcal/mol (8925.6104 without restraints) Performing minimization step: 2227. Total energy = 8941.3246 kcal/mol (8921.0364 without restraints) Performing minimization step: 2228. Total energy = 8936.7473 kcal/mol (8916.4655 without restraints) Performing minimization step: 2229. Total energy = 8932.1730 kcal/mol (8911.8974 without restraints) Performing minimization step: 2230. Total energy = 8927.6023 kcal/mol (8907.3332 without restraints) Performing minimization step: 2231. Total energy = 8923.0346 kcal/mol (8902.7719 without restraints) Performing minimization step: 2232. Total energy = 8918.4697 kcal/mol (8898.2133 without restraints) Performing minimization step: 2233. Total energy = 8913.9082 kcal/mol (8893.6582 without restraints) Performing minimization step: 2234. Total energy = 8909.3501 kcal/mol (8889.1065 without restraints) Performing minimization step: 2235. Total energy = 8904.7949 kcal/mol (8884.5577 without restraints) Performing minimization step: 2236. Total energy = 8900.2436 kcal/mol (8880.0128 without restraints) Performing minimization step: 2237. Total energy = 8895.6955 kcal/mol (8875.4710 without restraints) Performing minimization step: 2238. Total energy = 8891.1508 kcal/mol (8870.9327 without restraints) Performing minimization step: 2239. Total energy = 8886.6086 kcal/mol (8866.3968 without restraints) Performing minimization step: 2240. Total energy = 8882.0698 kcal/mol (8861.8644 without restraints) Performing minimization step: 2241. Total energy = 8877.5344 kcal/mol (8857.3355 without restraints) Performing minimization step: 2242. Total energy = 8873.0026 kcal/mol (8852.8100 without restraints) Performing minimization step: 2243. Total energy = 8868.4738 kcal/mol (8848.2875 without restraints) Performing minimization step: 2244. Total energy = 8863.9480 kcal/mol (8843.7678 without restraints) Performing minimization step: 2245. Total energy = 8859.4253 kcal/mol (8839.2516 without restraints) Performing minimization step: 2246. Total energy = 8854.9058 kcal/mol (8834.7385 without restraints) Performing minimization step: 2247. Total energy = 8850.3897 kcal/mol (8830.2288 without restraints) Performing minimization step: 2248. Total energy = 8845.8766 kcal/mol (8825.7220 without restraints) Performing minimization step: 2249. Total energy = 8841.3670 kcal/mol (8821.2187 without restraints) Performing minimization step: 2250. Total energy = 8836.8604 kcal/mol (8816.7185 without restraints) Performing minimization step: 2251. Total energy = 8832.3570 kcal/mol (8812.2214 without restraints) Performing minimization step: 2252. Total energy = 8827.8564 kcal/mol (8807.7272 without restraints) Performing minimization step: 2253. Total energy = 8823.3594 kcal/mol (8803.2365 without restraints) Performing minimization step: 2254. Total energy = 8818.8656 kcal/mol (8798.7489 without restraints) Performing minimization step: 2255. Total energy = 8814.3744 kcal/mol (8794.2641 without restraints) Performing minimization step: 2256. Total energy = 8809.8867 kcal/mol (8789.7828 without restraints) Performing minimization step: 2257. Total energy = 8805.4024 kcal/mol (8785.3047 without restraints) Performing minimization step: 2258. Total energy = 8800.9211 kcal/mol (8780.8298 without restraints) Performing minimization step: 2259. Total energy = 8796.4429 kcal/mol (8776.3580 without restraints) Performing minimization step: 2260. Total energy = 8791.9678 kcal/mol (8771.8892 without restraints) Performing minimization step: 2261. Total energy = 8787.4962 kcal/mol (8767.4239 without restraints) Performing minimization step: 2262. Total energy = 8783.0272 kcal/mol (8762.9613 without restraints) Performing minimization step: 2263. Total energy = 8778.5620 kcal/mol (8758.5025 without restraints) Performing minimization step: 2264. Total energy = 8774.0990 kcal/mol (8754.0457 without restraints) Performing minimization step: 2265. Total energy = 8769.6393 kcal/mol (8749.5923 without restraints) Performing minimization step: 2266. Total energy = 8765.1827 kcal/mol (8745.1420 without restraints) Performing minimization step: 2267. Total energy = 8760.7291 kcal/mol (8740.6948 without restraints) Performing minimization step: 2268. Total energy = 8756.2787 kcal/mol (8736.2507 without restraints) Performing minimization step: 2269. Total energy = 8751.8317 kcal/mol (8731.8100 without restraints) Performing minimization step: 2270. Total energy = 8747.3874 kcal/mol (8727.3720 without restraints) Performing minimization step: 2271. Total energy = 8742.9463 kcal/mol (8722.9372 without restraints) Performing minimization step: 2272. Total energy = 8738.5083 kcal/mol (8718.5056 without restraints) Performing minimization step: 2273. Total energy = 8734.0733 kcal/mol (8714.0768 without restraints) Performing minimization step: 2274. Total energy = 8729.6411 kcal/mol (8709.6510 without restraints) Performing minimization step: 2275. Total energy = 8725.2124 kcal/mol (8705.2285 without restraints) Performing minimization step: 2276. Total energy = 8720.7864 kcal/mol (8700.8089 without restraints) Performing minimization step: 2277. Total energy = 8716.3635 kcal/mol (8696.3922 without restraints) Performing minimization step: 2278. Total energy = 8711.9436 kcal/mol (8691.9787 without restraints) Performing minimization step: 2279. Total energy = 8707.5271 kcal/mol (8687.5684 without restraints) Performing minimization step: 2280. Total energy = 8703.1135 kcal/mol (8683.1611 without restraints) Performing minimization step: 2281. Total energy = 8698.7026 kcal/mol (8678.7566 without restraints) Performing minimization step: 2282. Total energy = 8694.2949 kcal/mol (8674.3551 without restraints) Performing minimization step: 2283. Total energy = 8689.8901 kcal/mol (8669.9566 without restraints) Performing minimization step: 2284. Total energy = 8685.4884 kcal/mol (8665.5612 without restraints) Performing minimization step: 2285. Total energy = 8681.0896 kcal/mol (8661.1687 without restraints) Performing minimization step: 2286. Total energy = 8676.6939 kcal/mol (8656.7792 without restraints) Performing minimization step: 2287. Total energy = 8672.3011 kcal/mol (8652.3927 without restraints) Performing minimization step: 2288. Total energy = 8667.9112 kcal/mol (8648.0092 without restraints) Performing minimization step: 2289. Total energy = 8663.5247 kcal/mol (8643.6289 without restraints) Performing minimization step: 2290. Total energy = 8659.1411 kcal/mol (8639.2516 without restraints) Performing minimization step: 2291. Total energy = 8654.7603 kcal/mol (8634.8770 without restraints) Performing minimization step: 2292. Total energy = 8650.3823 kcal/mol (8630.5055 without restraints) Performing minimization step: 2293. Total energy = 8646.0078 kcal/mol (8626.1371 without restraints) Performing minimization step: 2294. Total energy = 8641.6359 kcal/mol (8621.7714 without restraints) Performing minimization step: 2295. Total energy = 8637.2669 kcal/mol (8617.4088 without restraints) Performing minimization step: 2296. Total energy = 8632.9009 kcal/mol (8613.0490 without restraints) Performing minimization step: 2297. Total energy = 8628.5376 kcal/mol (8608.6919 without restraints) Performing minimization step: 2298. Total energy = 8624.1775 kcal/mol (8604.3381 without restraints) Performing minimization step: 2299. Total energy = 8619.8202 kcal/mol (8599.9871 without restraints) Performing minimization step: 2300. Total energy = 8615.4658 kcal/mol (8595.6390 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 8611.1145 kcal/mol (8591.2939 without restraints) Performing minimization step: 2302. Total energy = 8606.7662 kcal/mol (8586.9518 without restraints) Performing minimization step: 2303. Total energy = 8602.4205 kcal/mol (8582.6124 without restraints) Performing minimization step: 2304. Total energy = 8598.0781 kcal/mol (8578.2763 without restraints) Performing minimization step: 2305. Total energy = 8593.7384 kcal/mol (8573.9429 without restraints) Performing minimization step: 2306. Total energy = 8589.4017 kcal/mol (8569.6123 without restraints) Performing minimization step: 2307. Total energy = 8585.0678 kcal/mol (8565.2848 without restraints) Performing minimization step: 2308. Total energy = 8580.7368 kcal/mol (8560.9600 without restraints) Performing minimization step: 2309. Total energy = 8576.4089 kcal/mol (8556.6383 without restraints) Performing minimization step: 2310. Total energy = 8572.0840 kcal/mol (8552.3197 without restraints) Performing minimization step: 2311. Total energy = 8567.7622 kcal/mol (8548.0042 without restraints) Performing minimization step: 2312. Total energy = 8563.4430 kcal/mol (8543.6911 without restraints) Performing minimization step: 2313. Total energy = 8559.1265 kcal/mol (8539.3809 without restraints) Performing minimization step: 2314. Total energy = 8554.8131 kcal/mol (8535.0738 without restraints) Performing minimization step: 2315. Total energy = 8550.5029 kcal/mol (8530.7698 without restraints) Performing minimization step: 2316. Total energy = 8546.1950 kcal/mol (8526.4682 without restraints) Performing minimization step: 2317. Total energy = 8541.8902 kcal/mol (8522.1695 without restraints) Performing minimization step: 2318. Total energy = 8537.5881 kcal/mol (8517.8736 without restraints) Performing minimization step: 2319. Total energy = 8533.2888 kcal/mol (8513.5805 without restraints) Performing minimization step: 2320. Total energy = 8528.9921 kcal/mol (8509.2901 without restraints) Performing minimization step: 2321. Total energy = 8524.6989 kcal/mol (8505.0030 without restraints) Performing minimization step: 2322. Total energy = 8520.4082 kcal/mol (8500.7187 without restraints) Performing minimization step: 2323. Total energy = 8516.1203 kcal/mol (8496.4370 without restraints) Performing minimization step: 2324. Total energy = 8511.8354 kcal/mol (8492.1583 without restraints) Performing minimization step: 2325. Total energy = 8507.5534 kcal/mol (8487.8824 without restraints) Performing minimization step: 2326. Total energy = 8503.2740 kcal/mol (8483.6092 without restraints) Performing minimization step: 2327. Total energy = 8498.9973 kcal/mol (8479.3388 without restraints) Performing minimization step: 2328. Total energy = 8494.7236 kcal/mol (8475.0713 without restraints) Performing minimization step: 2329. Total energy = 8490.4524 kcal/mol (8470.8062 without restraints) Performing minimization step: 2330. Total energy = 8486.1847 kcal/mol (8466.5449 without restraints) Performing minimization step: 2331. Total energy = 8481.9193 kcal/mol (8462.2855 without restraints) Performing minimization step: 2332. Total energy = 8477.6570 kcal/mol (8458.0295 without restraints) Performing minimization step: 2333. Total energy = 8473.3977 kcal/mol (8453.7764 without restraints) Performing minimization step: 2334. Total energy = 8469.1407 kcal/mol (8449.5256 without restraints) Performing minimization step: 2335. Total energy = 8464.8869 kcal/mol (8445.2782 without restraints) Performing minimization step: 2336. Total energy = 8460.6357 kcal/mol (8441.0330 without restraints) Performing minimization step: 2337. Total energy = 8456.3872 kcal/mol (8436.7907 without restraints) Performing minimization step: 2338. Total energy = 8452.1410 kcal/mol (8432.5507 without restraints) Performing minimization step: 2339. Total energy = 8447.8980 kcal/mol (8428.3138 without restraints) Performing minimization step: 2340. Total energy = 8443.6574 kcal/mol (8424.0794 without restraints) Performing minimization step: 2341. Total energy = 8439.4194 kcal/mol (8419.8476 without restraints) Performing minimization step: 2342. Total energy = 8435.1843 kcal/mol (8415.6186 without restraints) Performing minimization step: 2343. Total energy = 8430.9523 kcal/mol (8411.3929 without restraints) Performing minimization step: 2344. Total energy = 8426.7232 kcal/mol (8407.1700 without restraints) Performing minimization step: 2345. Total energy = 8422.4967 kcal/mol (8402.9497 without restraints) Performing minimization step: 2346. Total energy = 8418.2727 kcal/mol (8398.7319 without restraints) Performing minimization step: 2347. Total energy = 8414.0517 kcal/mol (8394.5170 without restraints) Performing minimization step: 2348. Total energy = 8409.8335 kcal/mol (8390.3050 without restraints) Performing minimization step: 2349. Total energy = 8405.6178 kcal/mol (8386.0954 without restraints) Performing minimization step: 2350. Total energy = 8401.4043 kcal/mol (8381.8881 without restraints) Performing minimization step: 2351. Total energy = 8397.1948 kcal/mol (8377.6848 without restraints) Performing minimization step: 2352. Total energy = 8392.9870 kcal/mol (8373.4831 without restraints) Performing minimization step: 2353. Total energy = 8388.7824 kcal/mol (8369.2848 without restraints) Performing minimization step: 2354. Total energy = 8384.5801 kcal/mol (8365.0886 without restraints) Performing minimization step: 2355. Total energy = 8380.3808 kcal/mol (8360.8953 without restraints) Performing minimization step: 2356. Total energy = 8376.1839 kcal/mol (8356.7047 without restraints) Performing minimization step: 2357. Total energy = 8371.9902 kcal/mol (8352.5172 without restraints) Performing minimization step: 2358. Total energy = 8367.7992 kcal/mol (8348.3323 without restraints) Performing minimization step: 2359. Total energy = 8363.6109 kcal/mol (8344.1501 without restraints) Performing minimization step: 2360. Total energy = 8359.4253 kcal/mol (8339.9706 without restraints) Performing minimization step: 2361. Total energy = 8355.2429 kcal/mol (8335.7943 without restraints) Performing minimization step: 2362. Total energy = 8351.0629 kcal/mol (8331.6207 without restraints) Performing minimization step: 2363. Total energy = 8346.8847 kcal/mol (8327.4484 without restraints) Performing minimization step: 2364. Total energy = 8342.7095 kcal/mol (8323.2794 without restraints) Performing minimization step: 2365. Total energy = 8338.5372 kcal/mol (8319.1133 without restraints) Performing minimization step: 2366. Total energy = 8334.3675 kcal/mol (8314.9497 without restraints) Performing minimization step: 2367. Total energy = 8330.2001 kcal/mol (8310.7885 without restraints) Performing minimization step: 2368. Total energy = 8326.0356 kcal/mol (8306.6301 without restraints) Performing minimization step: 2369. Total energy = 8321.8739 kcal/mol (8302.4744 without restraints) Performing minimization step: 2370. Total energy = 8317.7148 kcal/mol (8298.3216 without restraints) Performing minimization step: 2371. Total energy = 8313.5586 kcal/mol (8294.1714 without restraints) Performing minimization step: 2372. Total energy = 8309.4048 kcal/mol (8290.0238 without restraints) Performing minimization step: 2373. Total energy = 8305.2537 kcal/mol (8285.8788 without restraints) Performing minimization step: 2374. Total energy = 8301.1053 kcal/mol (8281.7365 without restraints) Performing minimization step: 2375. Total energy = 8296.9592 kcal/mol (8277.5963 without restraints) Performing minimization step: 2376. Total energy = 8292.8160 kcal/mol (8273.4594 without restraints) Performing minimization step: 2377. Total energy = 8288.6753 kcal/mol (8269.3248 without restraints) Performing minimization step: 2378. Total energy = 8284.5372 kcal/mol (8265.1928 without restraints) Performing minimization step: 2379. Total energy = 8280.4018 kcal/mol (8261.0636 without restraints) Performing minimization step: 2380. Total energy = 8276.2693 kcal/mol (8256.9371 without restraints) Performing minimization step: 2381. Total energy = 8272.1396 kcal/mol (8252.8137 without restraints) Performing minimization step: 2382. Total energy = 8268.0121 kcal/mol (8248.6921 without restraints) Performing minimization step: 2383. Total energy = 8263.8871 kcal/mol (8244.5732 without restraints) Performing minimization step: 2384. Total energy = 8259.7646 kcal/mol (8240.4569 without restraints) Performing minimization step: 2385. Total energy = 8255.6450 kcal/mol (8236.3434 without restraints) Performing minimization step: 2386. Total energy = 8251.5285 kcal/mol (8232.2330 without restraints) Performing minimization step: 2387. Total energy = 8247.4139 kcal/mol (8228.1244 without restraints) Performing minimization step: 2388. Total energy = 8243.3017 kcal/mol (8224.0183 without restraints) Performing minimization step: 2389. Total energy = 8239.1922 kcal/mol (8219.9150 without restraints) Performing minimization step: 2390. Total energy = 8235.0852 kcal/mol (8215.8140 without restraints) Performing minimization step: 2391. Total energy = 8230.9807 kcal/mol (8211.7156 without restraints) Performing minimization step: 2392. Total energy = 8226.8791 kcal/mol (8207.6200 without restraints) Performing minimization step: 2393. Total energy = 8222.7798 kcal/mol (8203.5267 without restraints) Performing minimization step: 2394. Total energy = 8218.6833 kcal/mol (8199.4365 without restraints) Performing minimization step: 2395. Total energy = 8214.5893 kcal/mol (8195.3485 without restraints) Performing minimization step: 2396. Total energy = 8210.4981 kcal/mol (8191.2634 without restraints) Performing minimization step: 2397. Total energy = 8206.4093 kcal/mol (8187.1806 without restraints) Performing minimization step: 2398. Total energy = 8202.3230 kcal/mol (8183.1004 without restraints) Performing minimization step: 2399. Total energy = 8198.2395 kcal/mol (8179.0231 without restraints) Performing minimization step: 2400. Total energy = 8194.1584 kcal/mol (8174.9480 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 8190.0804 kcal/mol (8170.8760 without restraints) Performing minimization step: 2402. Total energy = 8186.0047 kcal/mol (8166.8064 without restraints) Performing minimization step: 2403. Total energy = 8181.9310 kcal/mol (8162.7388 without restraints) Performing minimization step: 2404. Total energy = 8177.8600 kcal/mol (8158.6739 without restraints) Performing minimization step: 2405. Total energy = 8173.7915 kcal/mol (8154.6113 without restraints) Performing minimization step: 2406. Total energy = 8169.7252 kcal/mol (8150.5511 without restraints) Performing minimization step: 2407. Total energy = 8165.6619 kcal/mol (8146.4938 without restraints) Performing minimization step: 2408. Total energy = 8161.6008 kcal/mol (8142.4388 without restraints) Performing minimization step: 2409. Total energy = 8157.5424 kcal/mol (8138.3866 without restraints) Performing minimization step: 2410. Total energy = 8153.4863 kcal/mol (8134.3364 without restraints) Performing minimization step: 2411. Total energy = 8149.4327 kcal/mol (8130.2888 without restraints) Performing minimization step: 2412. Total energy = 8145.3817 kcal/mol (8126.2438 without restraints) Performing minimization step: 2413. Total energy = 8141.3332 kcal/mol (8122.2014 without restraints) Performing minimization step: 2414. Total energy = 8137.2874 kcal/mol (8118.1617 without restraints) Performing minimization step: 2415. Total energy = 8133.2441 kcal/mol (8114.1245 without restraints) Performing minimization step: 2416. Total energy = 8129.2033 kcal/mol (8110.0896 without restraints) Performing minimization step: 2417. Total energy = 8125.1650 kcal/mol (8106.0573 without restraints) Performing minimization step: 2418. Total energy = 8121.1290 kcal/mol (8102.0274 without restraints) Performing minimization step: 2419. Total energy = 8117.0953 kcal/mol (8097.9997 without restraints) Performing minimization step: 2420. Total energy = 8113.0642 kcal/mol (8093.9747 without restraints) Performing minimization step: 2421. Total energy = 8109.0358 kcal/mol (8089.9522 without restraints) Performing minimization step: 2422. Total energy = 8105.0101 kcal/mol (8085.9327 without restraints) Performing minimization step: 2423. Total energy = 8100.9872 kcal/mol (8081.9156 without restraints) Performing minimization step: 2424. Total energy = 8096.9661 kcal/mol (8077.9005 without restraints) Performing minimization step: 2425. Total energy = 8092.9474 kcal/mol (8073.8879 without restraints) Performing minimization step: 2426. Total energy = 8088.9312 kcal/mol (8069.8778 without restraints) Performing minimization step: 2427. Total energy = 8084.9171 kcal/mol (8065.8696 without restraints) Performing minimization step: 2428. Total energy = 8080.9058 kcal/mol (8061.8644 without restraints) Performing minimization step: 2429. Total energy = 8076.8975 kcal/mol (8057.8620 without restraints) Performing minimization step: 2430. Total energy = 8072.8912 kcal/mol (8053.8617 without restraints) Performing minimization step: 2431. Total energy = 8068.8872 kcal/mol (8049.8637 without restraints) Performing minimization step: 2432. Total energy = 8064.8856 kcal/mol (8045.8681 without restraints) Performing minimization step: 2433. Total energy = 8060.8864 kcal/mol (8041.8749 without restraints) Performing minimization step: 2434. Total energy = 8056.8899 kcal/mol (8037.8845 without restraints) Performing minimization step: 2435. Total energy = 8052.8955 kcal/mol (8033.8960 without restraints) Performing minimization step: 2436. Total energy = 8048.9034 kcal/mol (8029.9099 without restraints) Performing minimization step: 2437. Total energy = 8044.9142 kcal/mol (8025.9267 without restraints) Performing minimization step: 2438. Total energy = 8040.9273 kcal/mol (8021.9458 without restraints) Performing minimization step: 2439. Total energy = 8036.9435 kcal/mol (8017.9680 without restraints) Performing minimization step: 2440. Total energy = 8032.9614 kcal/mol (8013.9918 without restraints) Performing minimization step: 2441. Total energy = 8028.9819 kcal/mol (8010.0183 without restraints) Performing minimization step: 2442. Total energy = 8025.0047 kcal/mol (8006.0471 without restraints) Performing minimization step: 2443. Total energy = 8021.0299 kcal/mol (8002.0782 without restraints) Performing minimization step: 2444. Total energy = 8017.0575 kcal/mol (7998.1118 without restraints) Performing minimization step: 2445. Total energy = 8013.0877 kcal/mol (7994.1480 without restraints) Performing minimization step: 2446. Total energy = 8009.1200 kcal/mol (7990.1863 without restraints) Performing minimization step: 2447. Total energy = 8005.1550 kcal/mol (7986.2273 without restraints) Performing minimization step: 2448. Total energy = 8001.1923 kcal/mol (7982.2707 without restraints) Performing minimization step: 2449. Total energy = 7997.2319 kcal/mol (7978.3161 without restraints) Performing minimization step: 2450. Total energy = 7993.2741 kcal/mol (7974.3642 without restraints) Performing minimization step: 2451. Total energy = 7989.3184 kcal/mol (7970.4145 without restraints) Performing minimization step: 2452. Total energy = 7985.3652 kcal/mol (7966.4673 without restraints) Performing minimization step: 2453. Total energy = 7981.4142 kcal/mol (7962.5222 without restraints) Performing minimization step: 2454. Total energy = 7977.4656 kcal/mol (7958.5795 without restraints) Performing minimization step: 2455. Total energy = 7973.5193 kcal/mol (7954.6392 without restraints) Performing minimization step: 2456. Total energy = 7969.5760 kcal/mol (7950.7020 without restraints) Performing minimization step: 2457. Total energy = 7965.6349 kcal/mol (7946.7666 without restraints) Performing minimization step: 2458. Total energy = 7961.6957 kcal/mol (7942.8334 without restraints) Performing minimization step: 2459. Total energy = 7957.7590 kcal/mol (7938.9026 without restraints) Performing minimization step: 2460. Total energy = 7953.8246 kcal/mol (7934.9741 without restraints) Performing minimization step: 2461. Total energy = 7949.8926 kcal/mol (7931.0481 without restraints) Performing minimization step: 2462. Total energy = 7945.9628 kcal/mol (7927.1244 without restraints) Performing minimization step: 2463. Total energy = 7942.0356 kcal/mol (7923.2030 without restraints) Performing minimization step: 2464. Total energy = 7938.1107 kcal/mol (7919.2839 without restraints) Performing minimization step: 2465. Total energy = 7934.1880 kcal/mol (7915.3672 without restraints) Performing minimization step: 2466. Total energy = 7930.2678 kcal/mol (7911.4530 without restraints) Performing minimization step: 2467. Total energy = 7926.3499 kcal/mol (7907.5410 without restraints) Performing minimization step: 2468. Total energy = 7922.4340 kcal/mol (7903.6309 without restraints) Performing minimization step: 2469. Total energy = 7918.5206 kcal/mol (7899.7234 without restraints) Performing minimization step: 2470. Total energy = 7914.6097 kcal/mol (7895.8186 without restraints) Performing minimization step: 2471. Total energy = 7910.7014 kcal/mol (7891.9161 without restraints) Performing minimization step: 2472. Total energy = 7906.7952 kcal/mol (7888.0158 without restraints) Performing minimization step: 2473. Total energy = 7902.8923 kcal/mol (7884.1188 without restraints) Performing minimization step: 2474. Total energy = 7898.9906 kcal/mol (7880.2230 without restraints) Performing minimization step: 2475. Total energy = 7895.0914 kcal/mol (7876.3298 without restraints) Performing minimization step: 2476. Total energy = 7891.1944 kcal/mol (7872.4387 without restraints) Performing minimization step: 2477. Total energy = 7887.2993 kcal/mol (7868.5495 without restraints) Performing minimization step: 2478. Total energy = 7883.4069 kcal/mol (7864.6630 without restraints) Performing minimization step: 2479. Total energy = 7879.5167 kcal/mol (7860.7786 without restraints) Performing minimization step: 2480. Total energy = 7875.6288 kcal/mol (7856.8967 without restraints) Performing minimization step: 2481. Total energy = 7871.7433 kcal/mol (7853.0170 without restraints) Performing minimization step: 2482. Total energy = 7867.8601 kcal/mol (7849.1397 without restraints) Performing minimization step: 2483. Total energy = 7863.9791 kcal/mol (7845.2644 without restraints) Performing minimization step: 2484. Total energy = 7860.1003 kcal/mol (7841.3916 without restraints) Performing minimization step: 2485. Total energy = 7856.2239 kcal/mol (7837.5211 without restraints) Performing minimization step: 2486. Total energy = 7852.3499 kcal/mol (7833.6531 without restraints) Performing minimization step: 2487. Total energy = 7848.4776 kcal/mol (7829.7865 without restraints) Performing minimization step: 2488. Total energy = 7844.6081 kcal/mol (7825.9231 without restraints) Performing minimization step: 2489. Total energy = 7840.7414 kcal/mol (7822.0621 without restraints) Performing minimization step: 2490. Total energy = 7836.8765 kcal/mol (7818.2031 without restraints) Performing minimization step: 2491. Total energy = 7833.0136 kcal/mol (7814.3461 without restraints) Performing minimization step: 2492. Total energy = 7829.1537 kcal/mol (7810.4921 without restraints) Performing minimization step: 2493. Total energy = 7825.2956 kcal/mol (7806.6398 without restraints) Performing minimization step: 2494. Total energy = 7821.4397 kcal/mol (7802.7898 without restraints) Performing minimization step: 2495. Total energy = 7817.5861 kcal/mol (7798.9420 without restraints) Performing minimization step: 2496. Total energy = 7813.7347 kcal/mol (7795.0965 without restraints) Performing minimization step: 2497. Total energy = 7809.8855 kcal/mol (7791.2531 without restraints) Performing minimization step: 2498. Total energy = 7806.0389 kcal/mol (7787.4124 without restraints) Performing minimization step: 2499. Total energy = 7802.1943 kcal/mol (7783.5736 without restraints) Performing minimization step: 2500. Total energy = 7798.3520 kcal/mol (7779.7372 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 7794.5120 kcal/mol (7775.9030 without restraints) Performing minimization step: 2502. Total energy = 7790.6741 kcal/mol (7772.0710 without restraints) Performing minimization step: 2503. Total energy = 7786.8392 kcal/mol (7768.2420 without restraints) Performing minimization step: 2504. Total energy = 7783.0059 kcal/mol (7764.4145 without restraints) Performing minimization step: 2505. Total energy = 7779.1749 kcal/mol (7760.5892 without restraints) Performing minimization step: 2506. Total energy = 7775.3462 kcal/mol (7756.7664 without restraints) Performing minimization step: 2507. Total energy = 7771.5196 kcal/mol (7752.9457 without restraints) Performing minimization step: 2508. Total energy = 7767.6953 kcal/mol (7749.1272 without restraints) Performing minimization step: 2509. Total energy = 7763.8735 kcal/mol (7745.3111 without restraints) Performing minimization step: 2510. Total energy = 7760.0537 kcal/mol (7741.4972 without restraints) Performing minimization step: 2511. Total energy = 7756.2359 kcal/mol (7737.6853 without restraints) Performing minimization step: 2512. Total energy = 7752.4208 kcal/mol (7733.8761 without restraints) Performing minimization step: 2513. Total energy = 7748.6078 kcal/mol (7730.0687 without restraints) Performing minimization step: 2514. Total energy = 7744.7969 kcal/mol (7726.2637 without restraints) Performing minimization step: 2515. Total energy = 7740.9881 kcal/mol (7722.4608 without restraints) Performing minimization step: 2516. Total energy = 7737.1815 kcal/mol (7718.6600 without restraints) Performing minimization step: 2517. Total energy = 7733.3770 kcal/mol (7714.8612 without restraints) Performing minimization step: 2518. Total energy = 7729.5754 kcal/mol (7711.0657 without restraints) Performing minimization step: 2519. Total energy = 7725.7755 kcal/mol (7707.2714 without restraints) Performing minimization step: 2520. Total energy = 7721.9778 kcal/mol (7703.4795 without restraints) Performing minimization step: 2521. Total energy = 7718.1822 kcal/mol (7699.6897 without restraints) Performing minimization step: 2522. Total energy = 7714.3891 kcal/mol (7695.9024 without restraints) Performing minimization step: 2523. Total energy = 7710.5980 kcal/mol (7692.1171 without restraints) Performing minimization step: 2524. Total energy = 7706.8090 kcal/mol (7688.3339 without restraints) Performing minimization step: 2525. Total energy = 7703.0225 kcal/mol (7684.5532 without restraints) Performing minimization step: 2526. Total energy = 7699.2380 kcal/mol (7680.7745 without restraints) Performing minimization step: 2527. Total energy = 7695.4556 kcal/mol (7676.9979 without restraints) Performing minimization step: 2528. Total energy = 7691.6759 kcal/mol (7673.2241 without restraints) Performing minimization step: 2529. Total energy = 7687.8978 kcal/mol (7669.4516 without restraints) Performing minimization step: 2530. Total energy = 7684.1222 kcal/mol (7665.6820 without restraints) Performing minimization step: 2531. Total energy = 7680.3489 kcal/mol (7661.9144 without restraints) Performing minimization step: 2532. Total energy = 7676.5781 kcal/mol (7658.1494 without restraints) Performing minimization step: 2533. Total energy = 7672.8088 kcal/mol (7654.3857 without restraints) Performing minimization step: 2534. Total energy = 7669.0419 kcal/mol (7650.6246 without restraints) Performing minimization step: 2535. Total energy = 7665.2768 kcal/mol (7646.8652 without restraints) Performing minimization step: 2536. Total energy = 7661.5139 kcal/mol (7643.1080 without restraints) Performing minimization step: 2537. Total energy = 7657.7534 kcal/mol (7639.3534 without restraints) Performing minimization step: 2538. Total energy = 7653.9950 kcal/mol (7635.6007 without restraints) Performing minimization step: 2539. Total energy = 7650.2393 kcal/mol (7631.8508 without restraints) Performing minimization step: 2540. Total energy = 7646.4852 kcal/mol (7628.1026 without restraints) Performing minimization step: 2541. Total energy = 7642.7337 kcal/mol (7624.3568 without restraints) Performing minimization step: 2542. Total energy = 7638.9837 kcal/mol (7620.6124 without restraints) Performing minimization step: 2543. Total energy = 7635.2363 kcal/mol (7616.8708 without restraints) Performing minimization step: 2544. Total energy = 7631.4909 kcal/mol (7613.1314 without restraints) Performing minimization step: 2545. Total energy = 7627.7475 kcal/mol (7609.3934 without restraints) Performing minimization step: 2546. Total energy = 7624.0065 kcal/mol (7605.6582 without restraints) Performing minimization step: 2547. Total energy = 7620.2674 kcal/mol (7601.9249 without restraints) Performing minimization step: 2548. Total energy = 7616.5305 kcal/mol (7598.1937 without restraints) Performing minimization step: 2549. Total energy = 7612.7959 kcal/mol (7594.4649 without restraints) Performing minimization step: 2550. Total energy = 7609.0634 kcal/mol (7590.7380 without restraints) Performing minimization step: 2551. Total energy = 7605.3331 kcal/mol (7587.0135 without restraints) Performing minimization step: 2552. Total energy = 7601.6043 kcal/mol (7583.2904 without restraints) Performing minimization step: 2553. Total energy = 7597.8786 kcal/mol (7579.5704 without restraints) Performing minimization step: 2554. Total energy = 7594.1549 kcal/mol (7575.8526 without restraints) Performing minimization step: 2555. Total energy = 7590.4328 kcal/mol (7572.1361 without restraints) Performing minimization step: 2556. Total energy = 7586.7133 kcal/mol (7568.4223 without restraints) Performing minimization step: 2557. Total energy = 7582.9958 kcal/mol (7564.7105 without restraints) Performing minimization step: 2558. Total energy = 7579.2800 kcal/mol (7561.0004 without restraints) Performing minimization step: 2559. Total energy = 7575.5665 kcal/mol (7557.2927 without restraints) Performing minimization step: 2560. Total energy = 7571.8555 kcal/mol (7553.5874 without restraints) Performing minimization step: 2561. Total energy = 7568.1460 kcal/mol (7549.8836 without restraints) Performing minimization step: 2562. Total energy = 7564.4387 kcal/mol (7546.1820 without restraints) Performing minimization step: 2563. Total energy = 7560.7340 kcal/mol (7542.4830 without restraints) Performing minimization step: 2564. Total energy = 7557.0311 kcal/mol (7538.7857 without restraints) Performing minimization step: 2565. Total energy = 7553.3303 kcal/mol (7535.0907 without restraints) Performing minimization step: 2566. Total energy = 7549.6317 kcal/mol (7531.3978 without restraints) Performing minimization step: 2567. Total energy = 7545.9350 kcal/mol (7527.7068 without restraints) Performing minimization step: 2568. Total energy = 7542.2409 kcal/mol (7524.0184 without restraints) Performing minimization step: 2569. Total energy = 7538.5488 kcal/mol (7520.3322 without restraints) Performing minimization step: 2570. Total energy = 7534.8590 kcal/mol (7516.6477 without restraints) Performing minimization step: 2571. Total energy = 7531.1708 kcal/mol (7512.9653 without restraints) Performing minimization step: 2572. Total energy = 7527.4849 kcal/mol (7509.2850 without restraints) Performing minimization step: 2573. Total energy = 7523.8009 kcal/mol (7505.6068 without restraints) Performing minimization step: 2574. Total energy = 7520.1195 kcal/mol (7501.9311 without restraints) Performing minimization step: 2575. Total energy = 7516.4397 kcal/mol (7498.2570 without restraints) Performing minimization step: 2576. Total energy = 7512.7621 kcal/mol (7494.5850 without restraints) Performing minimization step: 2577. Total energy = 7509.0869 kcal/mol (7490.9154 without restraints) Performing minimization step: 2578. Total energy = 7505.4134 kcal/mol (7487.2477 without restraints) Performing minimization step: 2579. Total energy = 7501.7421 kcal/mol (7483.5820 without restraints) Performing minimization step: 2580. Total energy = 7498.0728 kcal/mol (7479.9184 without restraints) Performing minimization step: 2581. Total energy = 7494.4057 kcal/mol (7476.2569 without restraints) Performing minimization step: 2582. Total energy = 7490.7407 kcal/mol (7472.5977 without restraints) Performing minimization step: 2583. Total energy = 7487.0778 kcal/mol (7468.9403 without restraints) Performing minimization step: 2584. Total energy = 7483.4172 kcal/mol (7465.2855 without restraints) Performing minimization step: 2585. Total energy = 7479.7588 kcal/mol (7461.6327 without restraints) Performing minimization step: 2586. Total energy = 7476.1018 kcal/mol (7457.9814 without restraints) Performing minimization step: 2587. Total energy = 7472.4470 kcal/mol (7454.3321 without restraints) Performing minimization step: 2588. Total energy = 7468.7942 kcal/mol (7450.6851 without restraints) Performing minimization step: 2589. Total energy = 7465.1437 kcal/mol (7447.0401 without restraints) Performing minimization step: 2590. Total energy = 7461.4953 kcal/mol (7443.3975 without restraints) Performing minimization step: 2591. Total energy = 7457.8488 kcal/mol (7439.7564 without restraints) Performing minimization step: 2592. Total energy = 7454.2039 kcal/mol (7436.1173 without restraints) Performing minimization step: 2593. Total energy = 7450.5615 kcal/mol (7432.4804 without restraints) Performing minimization step: 2594. Total energy = 7446.9211 kcal/mol (7428.8458 without restraints) Performing minimization step: 2595. Total energy = 7443.2824 kcal/mol (7425.2127 without restraints) Performing minimization step: 2596. Total energy = 7439.6464 kcal/mol (7421.5823 without restraints) Performing minimization step: 2597. Total energy = 7436.0124 kcal/mol (7417.9539 without restraints) Performing minimization step: 2598. Total energy = 7432.3801 kcal/mol (7414.3274 without restraints) Performing minimization step: 2599. Total energy = 7428.7506 kcal/mol (7410.7034 without restraints) Performing minimization step: 2600. Total energy = 7425.1226 kcal/mol (7407.0810 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 7421.4966 kcal/mol (7403.4607 without restraints) Performing minimization step: 2602. Total energy = 7417.8729 kcal/mol (7399.8425 without restraints) Performing minimization step: 2603. Total energy = 7414.2511 kcal/mol (7396.2264 without restraints) Performing minimization step: 2604. Total energy = 7410.6312 kcal/mol (7392.6121 without restraints) Performing minimization step: 2605. Total energy = 7407.0135 kcal/mol (7389.0000 without restraints) Performing minimization step: 2606. Total energy = 7403.3979 kcal/mol (7385.3900 without restraints) Performing minimization step: 2607. Total energy = 7399.7843 kcal/mol (7381.7820 without restraints) Performing minimization step: 2608. Total energy = 7396.1726 kcal/mol (7378.1759 without restraints) Performing minimization step: 2609. Total energy = 7392.5627 kcal/mol (7374.5716 without restraints) Performing minimization step: 2610. Total energy = 7388.9554 kcal/mol (7370.9698 without restraints) Performing minimization step: 2611. Total energy = 7385.3498 kcal/mol (7367.3699 without restraints) Performing minimization step: 2612. Total energy = 7381.7463 kcal/mol (7363.7720 without restraints) Performing minimization step: 2613. Total energy = 7378.1453 kcal/mol (7360.1765 without restraints) Performing minimization step: 2614. Total energy = 7374.5457 kcal/mol (7356.5824 without restraints) Performing minimization step: 2615. Total energy = 7370.9486 kcal/mol (7352.9912 without restraints) Performing minimization step: 2616. Total energy = 7367.3530 kcal/mol (7349.4010 without restraints) Performing minimization step: 2617. Total energy = 7363.7596 kcal/mol (7345.8132 without restraints) Performing minimization step: 2618. Total energy = 7360.1682 kcal/mol (7342.2274 without restraints) Performing minimization step: 2619. Total energy = 7356.5790 kcal/mol (7338.6437 without restraints) Performing minimization step: 2620. Total energy = 7352.9923 kcal/mol (7335.0626 without restraints) Performing minimization step: 2621. Total energy = 7349.4071 kcal/mol (7331.4830 without restraints) Performing minimization step: 2622. Total energy = 7345.8241 kcal/mol (7327.9056 without restraints) Performing minimization step: 2623. Total energy = 7342.2428 kcal/mol (7324.3298 without restraints) Performing minimization step: 2624. Total energy = 7338.6638 kcal/mol (7320.7563 without restraints) Performing minimization step: 2625. Total energy = 7335.0865 kcal/mol (7317.1846 without restraints) Performing minimization step: 2626. Total energy = 7331.5113 kcal/mol (7313.6150 without restraints) Performing minimization step: 2627. Total energy = 7327.9382 kcal/mol (7310.0476 without restraints) Performing minimization step: 2628. Total energy = 7324.3673 kcal/mol (7306.4822 without restraints) Performing minimization step: 2629. Total energy = 7320.7986 kcal/mol (7302.9190 without restraints) Performing minimization step: 2630. Total energy = 7317.2316 kcal/mol (7299.3575 without restraints) Performing minimization step: 2631. Total energy = 7313.6664 kcal/mol (7295.7980 without restraints) Performing minimization step: 2632. Total energy = 7310.1032 kcal/mol (7292.2400 without restraints) Performing minimization step: 2633. Total energy = 7306.5421 kcal/mol (7288.6846 without restraints) Performing minimization step: 2634. Total energy = 7302.9827 kcal/mol (7285.1309 without restraints) Performing minimization step: 2635. Total energy = 7299.4257 kcal/mol (7281.5793 without restraints) Performing minimization step: 2636. Total energy = 7295.8704 kcal/mol (7278.0295 without restraints) Performing minimization step: 2637. Total energy = 7292.3172 kcal/mol (7274.4819 without restraints) Performing minimization step: 2638. Total energy = 7288.7666 kcal/mol (7270.9369 without restraints) Performing minimization step: 2639. Total energy = 7285.2176 kcal/mol (7267.3933 without restraints) Performing minimization step: 2640. Total energy = 7281.6703 kcal/mol (7263.8516 without restraints) Performing minimization step: 2641. Total energy = 7278.1254 kcal/mol (7260.3122 without restraints) Performing minimization step: 2642. Total energy = 7274.5823 kcal/mol (7256.7747 without restraints) Performing minimization step: 2643. Total energy = 7271.0410 kcal/mol (7253.2388 without restraints) Performing minimization step: 2644. Total energy = 7267.5018 kcal/mol (7249.7052 without restraints) Performing minimization step: 2645. Total energy = 7263.9647 kcal/mol (7246.1735 without restraints) Performing minimization step: 2646. Total energy = 7260.4300 kcal/mol (7242.6447 without restraints) Performing minimization step: 2647. Total energy = 7256.8967 kcal/mol (7239.1165 without restraints) Performing minimization step: 2648. Total energy = 7253.3652 kcal/mol (7235.5906 without restraints) Performing minimization step: 2649. Total energy = 7249.8360 kcal/mol (7232.0669 without restraints) Performing minimization step: 2650. Total energy = 7246.3088 kcal/mol (7228.5452 without restraints) Performing minimization step: 2651. Total energy = 7242.7834 kcal/mol (7225.0254 without restraints) Performing minimization step: 2652. Total energy = 7239.2601 kcal/mol (7221.5075 without restraints) Performing minimization step: 2653. Total energy = 7235.7388 kcal/mol (7217.9918 without restraints) Performing minimization step: 2654. Total energy = 7232.2197 kcal/mol (7214.4781 without restraints) Performing minimization step: 2655. Total energy = 7228.7025 kcal/mol (7210.9664 without restraints) Performing minimization step: 2656. Total energy = 7225.1872 kcal/mol (7207.4566 without restraints) Performing minimization step: 2657. Total energy = 7221.6741 kcal/mol (7203.9490 without restraints) Performing minimization step: 2658. Total energy = 7218.1629 kcal/mol (7200.4433 without restraints) Performing minimization step: 2659. Total energy = 7214.6535 kcal/mol (7196.9393 without restraints) Performing minimization step: 2660. Total energy = 7211.1458 kcal/mol (7193.4372 without restraints) Performing minimization step: 2661. Total energy = 7207.6402 kcal/mol (7189.9369 without restraints) Performing minimization step: 2662. Total energy = 7204.1368 kcal/mol (7186.4391 without restraints) Performing minimization step: 2663. Total energy = 7200.6351 kcal/mol (7182.9429 without restraints) Performing minimization step: 2664. Total energy = 7197.1352 kcal/mol (7179.4484 without restraints) Performing minimization step: 2665. Total energy = 7193.6374 kcal/mol (7175.9561 without restraints) Performing minimization step: 2666. Total energy = 7190.1415 kcal/mol (7172.4655 without restraints) Performing minimization step: 2667. Total energy = 7186.6474 kcal/mol (7168.9769 without restraints) Performing minimization step: 2668. Total energy = 7183.1555 kcal/mol (7165.4906 without restraints) Performing minimization step: 2669. Total energy = 7179.6659 kcal/mol (7162.0066 without restraints) Performing minimization step: 2670. Total energy = 7176.1783 kcal/mol (7158.5244 without restraints) Performing minimization step: 2671. Total energy = 7172.6924 kcal/mol (7155.0438 without restraints) Performing minimization step: 2672. Total energy = 7169.2085 kcal/mol (7151.5654 without restraints) Performing minimization step: 2673. Total energy = 7165.7262 kcal/mol (7148.0886 without restraints) Performing minimization step: 2674. Total energy = 7162.2460 kcal/mol (7144.6138 without restraints) Performing minimization step: 2675. Total energy = 7158.7676 kcal/mol (7141.1409 without restraints) Performing minimization step: 2676. Total energy = 7155.2914 kcal/mol (7137.6701 without restraints) Performing minimization step: 2677. Total energy = 7151.8172 kcal/mol (7134.2014 without restraints) Performing minimization step: 2678. Total energy = 7148.3449 kcal/mol (7130.7345 without restraints) Performing minimization step: 2679. Total energy = 7144.8746 kcal/mol (7127.2696 without restraints) Performing minimization step: 2680. Total energy = 7141.4060 kcal/mol (7123.8065 without restraints) Performing minimization step: 2681. Total energy = 7137.9396 kcal/mol (7120.3456 without restraints) Performing minimization step: 2682. Total energy = 7134.4752 kcal/mol (7116.8865 without restraints) Performing minimization step: 2683. Total energy = 7131.0120 kcal/mol (7113.4288 without restraints) Performing minimization step: 2684. Total energy = 7127.5512 kcal/mol (7109.9734 without restraints) Performing minimization step: 2685. Total energy = 7124.0925 kcal/mol (7106.5201 without restraints) Performing minimization step: 2686. Total energy = 7120.6361 kcal/mol (7103.0691 without restraints) Performing minimization step: 2687. Total energy = 7117.1812 kcal/mol (7099.6197 without restraints) Performing minimization step: 2688. Total energy = 7113.7282 kcal/mol (7096.1721 without restraints) Performing minimization step: 2689. Total energy = 7110.2778 kcal/mol (7092.7273 without restraints) Performing minimization step: 2690. Total energy = 7106.8289 kcal/mol (7089.2836 without restraints) Performing minimization step: 2691. Total energy = 7103.3818 kcal/mol (7085.8420 without restraints) Performing minimization step: 2692. Total energy = 7099.9367 kcal/mol (7082.4022 without restraints) Performing minimization step: 2693. Total energy = 7096.4936 kcal/mol (7078.9647 without restraints) Performing minimization step: 2694. Total energy = 7093.0522 kcal/mol (7075.5286 without restraints) Performing minimization step: 2695. Total energy = 7089.6129 kcal/mol (7072.0947 without restraints) Performing minimization step: 2696. Total energy = 7086.1755 kcal/mol (7068.6627 without restraints) Performing minimization step: 2697. Total energy = 7082.7402 kcal/mol (7065.2326 without restraints) Performing minimization step: 2698. Total energy = 7079.3064 kcal/mol (7061.8044 without restraints) Performing minimization step: 2699. Total energy = 7075.8747 kcal/mol (7058.3781 without restraints) Performing minimization step: 2700. Total energy = 7072.4453 kcal/mol (7054.9541 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 7069.0176 kcal/mol (7051.5317 without restraints) Performing minimization step: 2702. Total energy = 7065.5916 kcal/mol (7048.1111 without restraints) Performing minimization step: 2703. Total energy = 7062.1677 kcal/mol (7044.6926 without restraints) Performing minimization step: 2704. Total energy = 7058.7456 kcal/mol (7041.2759 without restraints) Performing minimization step: 2705. Total energy = 7055.3253 kcal/mol (7037.8610 without restraints) Performing minimization step: 2706. Total energy = 7051.9069 kcal/mol (7034.4479 without restraints) Performing minimization step: 2707. Total energy = 7048.4905 kcal/mol (7031.0368 without restraints) Performing minimization step: 2708. Total energy = 7045.0761 kcal/mol (7027.6279 without restraints) Performing minimization step: 2709. Total energy = 7041.6635 kcal/mol (7024.2208 without restraints) Performing minimization step: 2710. Total energy = 7038.2532 kcal/mol (7020.8157 without restraints) Performing minimization step: 2711. Total energy = 7034.8445 kcal/mol (7017.4124 without restraints) Performing minimization step: 2712. Total energy = 7031.4382 kcal/mol (7014.0116 without restraints) Performing minimization step: 2713. Total energy = 7028.0340 kcal/mol (7010.6126 without restraints) Performing minimization step: 2714. Total energy = 7024.6311 kcal/mol (7007.2151 without restraints) Performing minimization step: 2715. Total energy = 7021.2301 kcal/mol (7003.8195 without restraints) Performing minimization step: 2716. Total energy = 7017.8312 kcal/mol (7000.4258 without restraints) Performing minimization step: 2717. Total energy = 7014.4338 kcal/mol (6997.0339 without restraints) Performing minimization step: 2718. Total energy = 7011.0385 kcal/mol (6993.6439 without restraints) Performing minimization step: 2719. Total energy = 7007.6453 kcal/mol (6990.2560 without restraints) Performing minimization step: 2720. Total energy = 7004.2542 kcal/mol (6986.8704 without restraints) Performing minimization step: 2721. Total energy = 7000.8651 kcal/mol (6983.4866 without restraints) Performing minimization step: 2722. Total energy = 6997.4775 kcal/mol (6980.1043 without restraints) Performing minimization step: 2723. Total energy = 6994.0918 kcal/mol (6976.7239 without restraints) Performing minimization step: 2724. Total energy = 6990.7081 kcal/mol (6973.3456 without restraints) Performing minimization step: 2725. Total energy = 6987.3265 kcal/mol (6969.9693 without restraints) Performing minimization step: 2726. Total energy = 6983.9468 kcal/mol (6966.5949 without restraints) Performing minimization step: 2727. Total energy = 6980.5687 kcal/mol (6963.2222 without restraints) Performing minimization step: 2728. Total energy = 6977.1928 kcal/mol (6959.8516 without restraints) Performing minimization step: 2729. Total energy = 6973.8188 kcal/mol (6956.4829 without restraints) Performing minimization step: 2730. Total energy = 6970.4464 kcal/mol (6953.1159 without restraints) Performing minimization step: 2731. Total energy = 6967.0760 kcal/mol (6949.7508 without restraints) Performing minimization step: 2732. Total energy = 6963.7079 kcal/mol (6946.3880 without restraints) Performing minimization step: 2733. Total energy = 6960.3413 kcal/mol (6943.0267 without restraints) Performing minimization step: 2734. Total energy = 6956.9768 kcal/mol (6939.6675 without restraints) Performing minimization step: 2735. Total energy = 6953.6136 kcal/mol (6936.3098 without restraints) Performing minimization step: 2736. Total energy = 6950.2528 kcal/mol (6932.9542 without restraints) Performing minimization step: 2737. Total energy = 6946.8938 kcal/mol (6929.6005 without restraints) Performing minimization step: 2738. Total energy = 6943.5369 kcal/mol (6926.2489 without restraints) Performing minimization step: 2739. Total energy = 6940.1816 kcal/mol (6922.8987 without restraints) Performing minimization step: 2740. Total energy = 6936.8282 kcal/mol (6919.5508 without restraints) Performing minimization step: 2741. Total energy = 6933.4768 kcal/mol (6916.2047 without restraints) Performing minimization step: 2742. Total energy = 6930.1274 kcal/mol (6912.8606 without restraints) Performing minimization step: 2743. Total energy = 6926.7800 kcal/mol (6909.5185 without restraints) Performing minimization step: 2744. Total energy = 6923.4346 kcal/mol (6906.1784 without restraints) Performing minimization step: 2745. Total energy = 6920.0907 kcal/mol (6902.8398 without restraints) Performing minimization step: 2746. Total energy = 6916.7489 kcal/mol (6899.5032 without restraints) Performing minimization step: 2747. Total energy = 6913.4092 kcal/mol (6896.1689 without restraints) Performing minimization step: 2748. Total energy = 6910.0710 kcal/mol (6892.8359 without restraints) Performing minimization step: 2749. Total energy = 6906.7347 kcal/mol (6889.5049 without restraints) Performing minimization step: 2750. Total energy = 6903.4004 kcal/mol (6886.1761 without restraints) Performing minimization step: 2751. Total energy = 6900.0681 kcal/mol (6882.8489 without restraints) Performing minimization step: 2752. Total energy = 6896.7375 kcal/mol (6879.5236 without restraints) Performing minimization step: 2753. Total energy = 6893.4088 kcal/mol (6876.2001 without restraints) Performing minimization step: 2754. Total energy = 6890.0820 kcal/mol (6872.8786 without restraints) Performing minimization step: 2755. Total energy = 6886.7573 kcal/mol (6869.5592 without restraints) Performing minimization step: 2756. Total energy = 6883.4343 kcal/mol (6866.2415 without restraints) Performing minimization step: 2757. Total energy = 6880.1131 kcal/mol (6862.9254 without restraints) Performing minimization step: 2758. Total energy = 6876.7936 kcal/mol (6859.6112 without restraints) Performing minimization step: 2759. Total energy = 6873.4756 kcal/mol (6856.2985 without restraints) Performing minimization step: 2760. Total energy = 6870.1601 kcal/mol (6852.9883 without restraints) Performing minimization step: 2761. Total energy = 6866.8465 kcal/mol (6849.6800 without restraints) Performing minimization step: 2762. Total energy = 6863.5348 kcal/mol (6846.3735 without restraints) Performing minimization step: 2763. Total energy = 6860.2250 kcal/mol (6843.0690 without restraints) Performing minimization step: 2764. Total energy = 6856.9171 kcal/mol (6839.7664 without restraints) Performing minimization step: 2765. Total energy = 6853.6111 kcal/mol (6836.4656 without restraints) Performing minimization step: 2766. Total energy = 6850.3068 kcal/mol (6833.1665 without restraints) Performing minimization step: 2767. Total energy = 6847.0046 kcal/mol (6829.8697 without restraints) Performing minimization step: 2768. Total energy = 6843.7043 kcal/mol (6826.5744 without restraints) Performing minimization step: 2769. Total energy = 6840.4057 kcal/mol (6823.2811 without restraints) Performing minimization step: 2770. Total energy = 6837.1092 kcal/mol (6819.9900 without restraints) Performing minimization step: 2771. Total energy = 6833.8145 kcal/mol (6816.7005 without restraints) Performing minimization step: 2772. Total energy = 6830.5221 kcal/mol (6813.4134 without restraints) Performing minimization step: 2773. Total energy = 6827.2309 kcal/mol (6810.1274 without restraints) Performing minimization step: 2774. Total energy = 6823.9426 kcal/mol (6806.8443 without restraints) Performing minimization step: 2775. Total energy = 6820.6556 kcal/mol (6803.5624 without restraints) Performing minimization step: 2776. Total energy = 6817.3703 kcal/mol (6800.2824 without restraints) Performing minimization step: 2777. Total energy = 6814.0868 kcal/mol (6797.0042 without restraints) Performing minimization step: 2778. Total energy = 6810.8054 kcal/mol (6793.7280 without restraints) Performing minimization step: 2779. Total energy = 6807.5257 kcal/mol (6790.4534 without restraints) Performing minimization step: 2780. Total energy = 6804.2477 kcal/mol (6787.1808 without restraints) Performing minimization step: 2781. Total energy = 6800.9720 kcal/mol (6783.9102 without restraints) Performing minimization step: 2782. Total energy = 6797.6981 kcal/mol (6780.6415 without restraints) Performing minimization step: 2783. Total energy = 6794.4260 kcal/mol (6777.3746 without restraints) Performing minimization step: 2784. Total energy = 6791.1557 kcal/mol (6774.1095 without restraints) Performing minimization step: 2785. Total energy = 6787.8867 kcal/mol (6770.8459 without restraints) Performing minimization step: 2786. Total energy = 6784.6204 kcal/mol (6767.5847 without restraints) Performing minimization step: 2787. Total energy = 6781.3555 kcal/mol (6764.3249 without restraints) Performing minimization step: 2788. Total energy = 6778.0928 kcal/mol (6761.0675 without restraints) Performing minimization step: 2789. Total energy = 6774.8320 kcal/mol (6757.8118 without restraints) Performing minimization step: 2790. Total energy = 6771.5731 kcal/mol (6754.5581 without restraints) Performing minimization step: 2791. Total energy = 6768.3163 kcal/mol (6751.3065 without restraints) Performing minimization step: 2792. Total energy = 6765.0610 kcal/mol (6748.0565 without restraints) Performing minimization step: 2793. Total energy = 6761.8077 kcal/mol (6744.8086 without restraints) Performing minimization step: 2794. Total energy = 6758.5563 kcal/mol (6741.5621 without restraints) Performing minimization step: 2795. Total energy = 6755.3065 kcal/mol (6738.3174 without restraints) Performing minimization step: 2796. Total energy = 6752.0585 kcal/mol (6735.0747 without restraints) Performing minimization step: 2797. Total energy = 6748.8127 kcal/mol (6731.8341 without restraints) Performing minimization step: 2798. Total energy = 6745.5687 kcal/mol (6728.5952 without restraints) Performing minimization step: 2799. Total energy = 6742.3265 kcal/mol (6725.3582 without restraints) Performing minimization step: 2800. Total energy = 6739.0856 kcal/mol (6722.1226 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 6735.8476 kcal/mol (6718.8897 without restraints) Performing minimization step: 2802. Total energy = 6732.6109 kcal/mol (6715.6581 without restraints) Performing minimization step: 2803. Total energy = 6729.3763 kcal/mol (6712.4287 without restraints) Performing minimization step: 2804. Total energy = 6726.1434 kcal/mol (6709.2011 without restraints) Performing minimization step: 2805. Total energy = 6722.9128 kcal/mol (6705.9757 without restraints) Performing minimization step: 2806. Total energy = 6719.6838 kcal/mol (6702.7517 without restraints) Performing minimization step: 2807. Total energy = 6716.4567 kcal/mol (6699.5298 without restraints) Performing minimization step: 2808. Total energy = 6713.2312 kcal/mol (6696.3095 without restraints) Performing minimization step: 2809. Total energy = 6710.0079 kcal/mol (6693.0913 without restraints) Performing minimization step: 2810. Total energy = 6706.7866 kcal/mol (6689.8752 without restraints) Performing minimization step: 2811. Total energy = 6703.5667 kcal/mol (6686.6604 without restraints) Performing minimization step: 2812. Total energy = 6700.3489 kcal/mol (6683.4478 without restraints) Performing minimization step: 2813. Total energy = 6697.1330 kcal/mol (6680.2371 without restraints) Performing minimization step: 2814. Total energy = 6693.9188 kcal/mol (6677.0280 without restraints) Performing minimization step: 2815. Total energy = 6690.7065 kcal/mol (6673.8208 without restraints) Performing minimization step: 2816. Total energy = 6687.4960 kcal/mol (6670.6154 without restraints) Performing minimization step: 2817. Total energy = 6684.2875 kcal/mol (6667.4121 without restraints) Performing minimization step: 2818. Total energy = 6681.0812 kcal/mol (6664.2110 without restraints) Performing minimization step: 2819. Total energy = 6677.8770 kcal/mol (6661.0121 without restraints) Performing minimization step: 2820. Total energy = 6674.6743 kcal/mol (6657.8143 without restraints) Performing minimization step: 2821. Total energy = 6671.4729 kcal/mol (6654.6179 without restraints) Performing minimization step: 2822. Total energy = 6668.2737 kcal/mol (6651.4242 without restraints) Performing minimization step: 2823. Total energy = 6665.0764 kcal/mol (6648.2318 without restraints) Performing minimization step: 2824. Total energy = 6661.8811 kcal/mol (6645.0417 without restraints) Performing minimization step: 2825. Total energy = 6658.6873 kcal/mol (6641.8529 without restraints) Performing minimization step: 2826. Total energy = 6655.4953 kcal/mol (6638.6661 without restraints) Performing minimization step: 2827. Total energy = 6652.3054 kcal/mol (6635.4814 without restraints) Performing minimization step: 2828. Total energy = 6649.1176 kcal/mol (6632.2986 without restraints) Performing minimization step: 2829. Total energy = 6645.9314 kcal/mol (6629.1177 without restraints) Performing minimization step: 2830. Total energy = 6642.7473 kcal/mol (6625.9386 without restraints) Performing minimization step: 2831. Total energy = 6639.5654 kcal/mol (6622.7617 without restraints) Performing minimization step: 2832. Total energy = 6636.3846 kcal/mol (6619.5859 without restraints) Performing minimization step: 2833. Total energy = 6633.2056 kcal/mol (6616.4121 without restraints) Performing minimization step: 2834. Total energy = 6630.0287 kcal/mol (6613.2405 without restraints) Performing minimization step: 2835. Total energy = 6626.8537 kcal/mol (6610.0705 without restraints) Performing minimization step: 2836. Total energy = 6623.6807 kcal/mol (6606.9027 without restraints) Performing minimization step: 2837. Total energy = 6620.5096 kcal/mol (6603.7366 without restraints) Performing minimization step: 2838. Total energy = 6617.3402 kcal/mol (6600.5723 without restraints) Performing minimization step: 2839. Total energy = 6614.1727 kcal/mol (6597.4100 without restraints) Performing minimization step: 2840. Total energy = 6611.0073 kcal/mol (6594.2496 without restraints) Performing minimization step: 2841. Total energy = 6607.8435 kcal/mol (6591.0909 without restraints) Performing minimization step: 2842. Total energy = 6604.6812 kcal/mol (6587.9337 without restraints) Performing minimization step: 2843. Total energy = 6601.5212 kcal/mol (6584.7789 without restraints) Performing minimization step: 2844. Total energy = 6598.3629 kcal/mol (6581.6256 without restraints) Performing minimization step: 2845. Total energy = 6595.2062 kcal/mol (6578.4740 without restraints) Performing minimization step: 2846. Total energy = 6592.0516 kcal/mol (6575.3244 without restraints) Performing minimization step: 2847. Total energy = 6588.8988 kcal/mol (6572.1768 without restraints) Performing minimization step: 2848. Total energy = 6585.7477 kcal/mol (6569.0307 without restraints) Performing minimization step: 2849. Total energy = 6582.5986 kcal/mol (6565.8866 without restraints) Performing minimization step: 2850. Total energy = 6579.4514 kcal/mol (6562.7446 without restraints) Performing minimization step: 2851. Total energy = 6576.3061 kcal/mol (6559.6043 without restraints) Performing minimization step: 2852. Total energy = 6573.1627 kcal/mol (6556.4659 without restraints) Performing minimization step: 2853. Total energy = 6570.0209 kcal/mol (6553.3294 without restraints) Performing minimization step: 2854. Total energy = 6566.8811 kcal/mol (6550.1945 without restraints) Performing minimization step: 2855. Total energy = 6563.7433 kcal/mol (6547.0618 without restraints) Performing minimization step: 2856. Total energy = 6560.6071 kcal/mol (6543.9305 without restraints) Performing minimization step: 2857. Total energy = 6557.4731 kcal/mol (6540.8018 without restraints) Performing minimization step: 2858. Total energy = 6554.3408 kcal/mol (6537.6745 without restraints) Performing minimization step: 2859. Total energy = 6551.2107 kcal/mol (6534.5494 without restraints) Performing minimization step: 2860. Total energy = 6548.0824 kcal/mol (6531.4262 without restraints) Performing minimization step: 2861. Total energy = 6544.9556 kcal/mol (6528.3044 without restraints) Performing minimization step: 2862. Total energy = 6541.8306 kcal/mol (6525.1845 without restraints) Performing minimization step: 2863. Total energy = 6538.7076 kcal/mol (6522.0665 without restraints) Performing minimization step: 2864. Total energy = 6535.5863 kcal/mol (6518.9502 without restraints) Performing minimization step: 2865. Total energy = 6532.4669 kcal/mol (6515.8360 without restraints) Performing minimization step: 2866. Total energy = 6529.3496 kcal/mol (6512.7237 without restraints) Performing minimization step: 2867. Total energy = 6526.2341 kcal/mol (6509.6132 without restraints) Performing minimization step: 2868. Total energy = 6523.1209 kcal/mol (6506.5051 without restraints) Performing minimization step: 2869. Total energy = 6520.0092 kcal/mol (6503.3984 without restraints) Performing minimization step: 2870. Total energy = 6516.8992 kcal/mol (6500.2934 without restraints) Performing minimization step: 2871. Total energy = 6513.7909 kcal/mol (6497.1901 without restraints) Performing minimization step: 2872. Total energy = 6510.6844 kcal/mol (6494.0887 without restraints) Performing minimization step: 2873. Total energy = 6507.5799 kcal/mol (6490.9892 without restraints) Performing minimization step: 2874. Total energy = 6504.4770 kcal/mol (6487.8913 without restraints) Performing minimization step: 2875. Total energy = 6501.3762 kcal/mol (6484.7955 without restraints) Performing minimization step: 2876. Total energy = 6498.2774 kcal/mol (6481.7018 without restraints) Performing minimization step: 2877. Total energy = 6495.1805 kcal/mol (6478.6099 without restraints) Performing minimization step: 2878. Total energy = 6492.0852 kcal/mol (6475.5197 without restraints) Performing minimization step: 2879. Total energy = 6488.9919 kcal/mol (6472.4314 without restraints) Performing minimization step: 2880. Total energy = 6485.9005 kcal/mol (6469.3450 without restraints) Performing minimization step: 2881. Total energy = 6482.8107 kcal/mol (6466.2601 without restraints) Performing minimization step: 2882. Total energy = 6479.7230 kcal/mol (6463.1775 without restraints) Performing minimization step: 2883. Total energy = 6476.6373 kcal/mol (6460.0968 without restraints) Performing minimization step: 2884. Total energy = 6473.5531 kcal/mol (6457.0175 without restraints) Performing minimization step: 2885. Total energy = 6470.4709 kcal/mol (6453.9404 without restraints) Performing minimization step: 2886. Total energy = 6467.3907 kcal/mol (6450.8653 without restraints) Performing minimization step: 2887. Total energy = 6464.3119 kcal/mol (6447.7912 without restraints) Performing minimization step: 2888. Total energy = 6461.2344 kcal/mol (6444.7189 without restraints) Performing minimization step: 2889. Total energy = 6458.1599 kcal/mol (6441.6496 without restraints) Performing minimization step: 2890. Total energy = 6455.0870 kcal/mol (6438.5815 without restraints) Performing minimization step: 2891. Total energy = 6452.0158 kcal/mol (6435.5153 without restraints) Performing minimization step: 2892. Total energy = 6448.9464 kcal/mol (6432.4509 without restraints) Performing minimization step: 2893. Total energy = 6445.8794 kcal/mol (6429.3890 without restraints) Performing minimization step: 2894. Total energy = 6442.8137 kcal/mol (6426.3280 without restraints) Performing minimization step: 2895. Total energy = 6439.7499 kcal/mol (6423.2694 without restraints) Performing minimization step: 2896. Total energy = 6436.6884 kcal/mol (6420.2129 without restraints) Performing minimization step: 2897. Total energy = 6433.6283 kcal/mol (6417.1577 without restraints) Performing minimization step: 2898. Total energy = 6430.5705 kcal/mol (6414.1050 without restraints) Performing minimization step: 2899. Total energy = 6427.5142 kcal/mol (6411.0535 without restraints) Performing minimization step: 2900. Total energy = 6424.4600 kcal/mol (6408.0044 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 6421.4075 kcal/mol (6404.9568 without restraints) Performing minimization step: 2902. Total energy = 6418.3566 kcal/mol (6401.9109 without restraints) Performing minimization step: 2903. Total energy = 6415.3076 kcal/mol (6398.8669 without restraints) Performing minimization step: 2904. Total energy = 6412.2605 kcal/mol (6395.8248 without restraints) Performing minimization step: 2905. Total energy = 6409.2152 kcal/mol (6392.7845 without restraints) Performing minimization step: 2906. Total energy = 6406.1718 kcal/mol (6389.7460 without restraints) Performing minimization step: 2907. Total energy = 6403.1302 kcal/mol (6386.7093 without restraints) Performing minimization step: 2908. Total energy = 6400.0904 kcal/mol (6383.6746 without restraints) Performing minimization step: 2909. Total energy = 6397.0526 kcal/mol (6380.6417 without restraints) Performing minimization step: 2910. Total energy = 6394.0171 kcal/mol (6377.6111 without restraints) Performing minimization step: 2911. Total energy = 6390.9831 kcal/mol (6374.5821 without restraints) Performing minimization step: 2912. Total energy = 6387.9512 kcal/mol (6371.5551 without restraints) Performing minimization step: 2913. Total energy = 6384.9207 kcal/mol (6368.5295 without restraints) Performing minimization step: 2914. Total energy = 6381.8924 kcal/mol (6365.5065 without restraints) Performing minimization step: 2915. Total energy = 6378.8659 kcal/mol (6362.4847 without restraints) Performing minimization step: 2916. Total energy = 6375.8409 kcal/mol (6359.4645 without restraints) Performing minimization step: 2917. Total energy = 6372.8179 kcal/mol (6356.4467 without restraints) Performing minimization step: 2918. Total energy = 6369.7965 kcal/mol (6353.4302 without restraints) Performing minimization step: 2919. Total energy = 6366.7772 kcal/mol (6350.4157 without restraints) Performing minimization step: 2920. Total energy = 6363.7599 kcal/mol (6347.4034 without restraints) Performing minimization step: 2921. Total energy = 6360.7442 kcal/mol (6344.3927 without restraints) Performing minimization step: 2922. Total energy = 6357.7304 kcal/mol (6341.3838 without restraints) Performing minimization step: 2923. Total energy = 6354.7183 kcal/mol (6338.3766 without restraints) Performing minimization step: 2924. Total energy = 6351.7082 kcal/mol (6335.3715 without restraints) Performing minimization step: 2925. Total energy = 6348.7001 kcal/mol (6332.3683 without restraints) Performing minimization step: 2926. Total energy = 6345.6937 kcal/mol (6329.3670 without restraints) Performing minimization step: 2927. Total energy = 6342.6893 kcal/mol (6326.3673 without restraints) Performing minimization step: 2928. Total energy = 6339.6869 kcal/mol (6323.3699 without restraints) Performing minimization step: 2929. Total energy = 6336.6861 kcal/mol (6320.3740 without restraints) Performing minimization step: 2930. Total energy = 6333.6870 kcal/mol (6317.3798 without restraints) Performing minimization step: 2931. Total energy = 6330.6898 kcal/mol (6314.3876 without restraints) Performing minimization step: 2932. Total energy = 6327.6943 kcal/mol (6311.3971 without restraints) Performing minimization step: 2933. Total energy = 6324.7010 kcal/mol (6308.4085 without restraints) Performing minimization step: 2934. Total energy = 6321.7094 kcal/mol (6305.4219 without restraints) Performing minimization step: 2935. Total energy = 6318.7195 kcal/mol (6302.4369 without restraints) Performing minimization step: 2936. Total energy = 6315.7314 kcal/mol (6299.4537 without restraints) Performing minimization step: 2937. Total energy = 6312.7451 kcal/mol (6296.4723 without restraints) Performing minimization step: 2938. Total energy = 6309.7616 kcal/mol (6293.4938 without restraints) Performing minimization step: 2939. Total energy = 6306.7790 kcal/mol (6290.5161 without restraints) Performing minimization step: 2940. Total energy = 6303.7987 kcal/mol (6287.5405 without restraints) Performing minimization step: 2941. Total energy = 6300.8198 kcal/mol (6284.5665 without restraints) Performing minimization step: 2942. Total energy = 6297.8427 kcal/mol (6281.5944 without restraints) Performing minimization step: 2943. Total energy = 6294.8674 kcal/mol (6278.6241 without restraints) Performing minimization step: 2944. Total energy = 6291.8946 kcal/mol (6275.6563 without restraints) Performing minimization step: 2945. Total energy = 6288.9234 kcal/mol (6272.6898 without restraints) Performing minimization step: 2946. Total energy = 6285.9540 kcal/mol (6269.7253 without restraints) Performing minimization step: 2947. Total energy = 6282.9866 kcal/mol (6266.7628 without restraints) Performing minimization step: 2948. Total energy = 6280.0209 kcal/mol (6263.8020 without restraints) Performing minimization step: 2949. Total energy = 6277.0568 kcal/mol (6260.8428 without restraints) Performing minimization step: 2950. Total energy = 6274.0948 kcal/mol (6257.8857 without restraints) Performing minimization step: 2951. Total energy = 6271.1348 kcal/mol (6254.9305 without restraints) Performing minimization step: 2952. Total energy = 6268.1762 kcal/mol (6251.9769 without restraints) Performing minimization step: 2953. Total energy = 6265.2198 kcal/mol (6249.0253 without restraints) Performing minimization step: 2954. Total energy = 6262.2652 kcal/mol (6246.0756 without restraints) Performing minimization step: 2955. Total energy = 6259.3124 kcal/mol (6243.1277 without restraints) Performing minimization step: 2956. Total energy = 6256.3612 kcal/mol (6240.1813 without restraints) Performing minimization step: 2957. Total energy = 6253.4123 kcal/mol (6237.2373 without restraints) Performing minimization step: 2958. Total energy = 6250.4653 kcal/mol (6234.2952 without restraints) Performing minimization step: 2959. Total energy = 6247.5199 kcal/mol (6231.3546 without restraints) Performing minimization step: 2960. Total energy = 6244.5764 kcal/mol (6228.4160 without restraints) Performing minimization step: 2961. Total energy = 6241.6349 kcal/mol (6225.4794 without restraints) Performing minimization step: 2962. Total energy = 6238.6952 kcal/mol (6222.5445 without restraints) Performing minimization step: 2963. Total energy = 6235.7572 kcal/mol (6219.6114 without restraints) Performing minimization step: 2964. Total energy = 6232.8211 kcal/mol (6216.6802 without restraints) Performing minimization step: 2965. Total energy = 6229.8866 kcal/mol (6213.7505 without restraints) Performing minimization step: 2966. Total energy = 6226.9541 kcal/mol (6210.8229 without restraints) Performing minimization step: 2967. Total energy = 6224.0235 kcal/mol (6207.8971 without restraints) Performing minimization step: 2968. Total energy = 6221.0948 kcal/mol (6204.9733 without restraints) Performing minimization step: 2969. Total energy = 6218.1678 kcal/mol (6202.0513 without restraints) Performing minimization step: 2970. Total energy = 6215.2431 kcal/mol (6199.1315 without restraints) Performing minimization step: 2971. Total energy = 6212.3198 kcal/mol (6196.2128 without restraints) Performing minimization step: 2972. Total energy = 6209.3984 kcal/mol (6193.2963 without restraints) Performing minimization step: 2973. Total energy = 6206.4789 kcal/mol (6190.3816 without restraints) Performing minimization step: 2974. Total energy = 6203.5615 kcal/mol (6187.4691 without restraints) Performing minimization step: 2975. Total energy = 6200.6457 kcal/mol (6184.5581 without restraints) Performing minimization step: 2976. Total energy = 6197.7324 kcal/mol (6181.6497 without restraints) Performing minimization step: 2977. Total energy = 6194.8203 kcal/mol (6178.7423 without restraints) Performing minimization step: 2978. Total energy = 6191.9101 kcal/mol (6175.8370 without restraints) Performing minimization step: 2979. Total energy = 6189.0018 kcal/mol (6172.9335 without restraints) Performing minimization step: 2980. Total energy = 6186.0953 kcal/mol (6170.0320 without restraints) Performing minimization step: 2981. Total energy = 6183.1907 kcal/mol (6167.1322 without restraints) Performing minimization step: 2982. Total energy = 6180.2879 kcal/mol (6164.2342 without restraints) Performing minimization step: 2983. Total energy = 6177.3870 kcal/mol (6161.3380 without restraints) Performing minimization step: 2984. Total energy = 6174.4876 kcal/mol (6158.4436 without restraints) Performing minimization step: 2985. Total energy = 6171.5900 kcal/mol (6155.5507 without restraints) Performing minimization step: 2986. Total energy = 6168.6948 kcal/mol (6152.6603 without restraints) Performing minimization step: 2987. Total energy = 6165.8013 kcal/mol (6149.7718 without restraints) Performing minimization step: 2988. Total energy = 6162.9099 kcal/mol (6146.8851 without restraints) Performing minimization step: 2989. Total energy = 6160.0206 kcal/mol (6144.0007 without restraints) Performing minimization step: 2990. Total energy = 6157.1327 kcal/mol (6141.1175 without restraints) Performing minimization step: 2991. Total energy = 6154.2463 kcal/mol (6138.2360 without restraints) Performing minimization step: 2992. Total energy = 6151.3619 kcal/mol (6135.3563 without restraints) Performing minimization step: 2993. Total energy = 6148.4797 kcal/mol (6132.4790 without restraints) Performing minimization step: 2994. Total energy = 6145.5993 kcal/mol (6129.6033 without restraints) Performing minimization step: 2995. Total energy = 6142.7205 kcal/mol (6126.7294 without restraints) Performing minimization step: 2996. Total energy = 6139.8437 kcal/mol (6123.8575 without restraints) Performing minimization step: 2997. Total energy = 6136.9689 kcal/mol (6120.9873 without restraints) Performing minimization step: 2998. Total energy = 6134.0957 kcal/mol (6118.1190 without restraints) Performing minimization step: 2999. Total energy = 6131.2247 kcal/mol (6115.2528 without restraints) Performing minimization step: 3000. Total energy = 6128.3552 kcal/mol (6112.3881 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 6125.4879 kcal/mol (6109.5257 without restraints) Performing minimization step: 3002. Total energy = 6122.6223 kcal/mol (6106.6648 without restraints) Performing minimization step: 3003. Total energy = 6119.7583 kcal/mol (6103.8055 without restraints) Performing minimization step: 3004. Total energy = 6116.8963 kcal/mol (6100.9483 without restraints) Performing minimization step: 3005. Total energy = 6114.0361 kcal/mol (6098.0929 without restraints) Performing minimization step: 3006. Total energy = 6111.1779 kcal/mol (6095.2394 without restraints) Performing minimization step: 3007. Total energy = 6108.3213 kcal/mol (6092.3877 without restraints) Performing minimization step: 3008. Total energy = 6105.4669 kcal/mol (6089.5381 without restraints) Performing minimization step: 3009. Total energy = 6102.6138 kcal/mol (6086.6898 without restraints) Performing minimization step: 3010. Total energy = 6099.7630 kcal/mol (6083.8438 without restraints) Performing minimization step: 3011. Total energy = 6096.9140 kcal/mol (6080.9995 without restraints) Performing minimization step: 3012. Total energy = 6094.0671 kcal/mol (6078.1574 without restraints) Performing minimization step: 3013. Total energy = 6091.2219 kcal/mol (6075.3170 without restraints) Performing minimization step: 3014. Total energy = 6088.3783 kcal/mol (6072.4779 without restraints) Performing minimization step: 3015. Total energy = 6085.5368 kcal/mol (6069.6414 without restraints) Performing minimization step: 3016. Total energy = 6082.6974 kcal/mol (6066.8068 without restraints) Performing minimization step: 3017. Total energy = 6079.8593 kcal/mol (6063.9735 without restraints) Performing minimization step: 3018. Total energy = 6077.0235 kcal/mol (6061.1423 without restraints) Performing minimization step: 3019. Total energy = 6074.1893 kcal/mol (6058.3130 without restraints) Performing minimization step: 3020. Total energy = 6071.3570 kcal/mol (6055.4855 without restraints) Performing minimization step: 3021. Total energy = 6068.5266 kcal/mol (6052.6598 without restraints) Performing minimization step: 3022. Total energy = 6065.6980 kcal/mol (6049.8359 without restraints) Performing minimization step: 3023. Total energy = 6062.8715 kcal/mol (6047.0144 without restraints) Performing minimization step: 3024. Total energy = 6060.0471 kcal/mol (6044.1945 without restraints) Performing minimization step: 3025. Total energy = 6057.2241 kcal/mol (6041.3764 without restraints) Performing minimization step: 3026. Total energy = 6054.4029 kcal/mol (6038.5599 without restraints) Performing minimization step: 3027. Total energy = 6051.5841 kcal/mol (6035.7459 without restraints) Performing minimization step: 3028. Total energy = 6048.7668 kcal/mol (6032.9333 without restraints) Performing minimization step: 3029. Total energy = 6045.9518 kcal/mol (6030.1232 without restraints) Performing minimization step: 3030. Total energy = 6043.1384 kcal/mol (6027.3144 without restraints) Performing minimization step: 3031. Total energy = 6040.3266 kcal/mol (6024.5073 without restraints) Performing minimization step: 3032. Total energy = 6037.5168 kcal/mol (6021.7023 without restraints) Performing minimization step: 3033. Total energy = 6034.7087 kcal/mol (6018.8990 without restraints) Performing minimization step: 3034. Total energy = 6031.9025 kcal/mol (6016.0975 without restraints) Performing minimization step: 3035. Total energy = 6029.0984 kcal/mol (6013.2982 without restraints) Performing minimization step: 3036. Total energy = 6026.2968 kcal/mol (6010.5014 without restraints) Performing minimization step: 3037. Total energy = 6023.4962 kcal/mol (6007.7054 without restraints) Performing minimization step: 3038. Total energy = 6020.6974 kcal/mol (6004.9114 without restraints) Performing minimization step: 3039. Total energy = 6017.9006 kcal/mol (6002.1192 without restraints) Performing minimization step: 3040. Total energy = 6015.1055 kcal/mol (5999.3290 without restraints) Performing minimization step: 3041. Total energy = 6012.3126 kcal/mol (5996.5408 without restraints) Performing minimization step: 3042. Total energy = 6009.5215 kcal/mol (5993.7544 without restraints) Performing minimization step: 3043. Total energy = 6006.7324 kcal/mol (5990.9700 without restraints) Performing minimization step: 3044. Total energy = 6003.9449 kcal/mol (5988.1872 without restraints) Performing minimization step: 3045. Total energy = 6001.1593 kcal/mol (5985.4064 without restraints) Performing minimization step: 3046. Total energy = 5998.3756 kcal/mol (5982.6273 without restraints) Performing minimization step: 3047. Total energy = 5995.5938 kcal/mol (5979.8503 without restraints) Performing minimization step: 3048. Total energy = 5992.8138 kcal/mol (5977.0750 without restraints) Performing minimization step: 3049. Total energy = 5990.0358 kcal/mol (5974.3017 without restraints) Performing minimization step: 3050. Total energy = 5987.2593 kcal/mol (5971.5299 without restraints) Performing minimization step: 3051. Total energy = 5984.4849 kcal/mol (5968.7602 without restraints) Performing minimization step: 3052. Total energy = 5981.7123 kcal/mol (5965.9924 without restraints) Performing minimization step: 3053. Total energy = 5978.9417 kcal/mol (5963.2264 without restraints) Performing minimization step: 3054. Total energy = 5976.1728 kcal/mol (5960.4623 without restraints) Performing minimization step: 3055. Total energy = 5973.4060 kcal/mol (5957.7002 without restraints) Performing minimization step: 3056. Total energy = 5970.6413 kcal/mol (5954.9403 without restraints) Performing minimization step: 3057. Total energy = 5967.8783 kcal/mol (5952.1819 without restraints) Performing minimization step: 3058. Total energy = 5965.1171 kcal/mol (5949.4253 without restraints) Performing minimization step: 3059. Total energy = 5962.3576 kcal/mol (5946.6706 without restraints) Performing minimization step: 3060. Total energy = 5959.5998 kcal/mol (5943.9175 without restraints) Performing minimization step: 3061. Total energy = 5956.8445 kcal/mol (5941.1669 without restraints) Performing minimization step: 3062. Total energy = 5954.0907 kcal/mol (5938.4178 without restraints) Performing minimization step: 3063. Total energy = 5951.3392 kcal/mol (5935.6712 without restraints) Performing minimization step: 3064. Total energy = 5948.5893 kcal/mol (5932.9258 without restraints) Performing minimization step: 3065. Total energy = 5945.8416 kcal/mol (5930.1828 without restraints) Performing minimization step: 3066. Total energy = 5943.0954 kcal/mol (5927.4414 without restraints) Performing minimization step: 3067. Total energy = 5940.3516 kcal/mol (5924.7022 without restraints) Performing minimization step: 3068. Total energy = 5937.6094 kcal/mol (5921.9647 without restraints) Performing minimization step: 3069. Total energy = 5934.8685 kcal/mol (5919.2285 without restraints) Performing minimization step: 3070. Total energy = 5932.1299 kcal/mol (5916.4945 without restraints) Performing minimization step: 3071. Total energy = 5929.3928 kcal/mol (5913.7622 without restraints) Performing minimization step: 3072. Total energy = 5926.6579 kcal/mol (5911.0319 without restraints) Performing minimization step: 3073. Total energy = 5923.9249 kcal/mol (5908.3036 without restraints) Performing minimization step: 3074. Total energy = 5921.1942 kcal/mol (5905.5775 without restraints) Performing minimization step: 3075. Total energy = 5918.4649 kcal/mol (5902.8530 without restraints) Performing minimization step: 3076. Total energy = 5915.7373 kcal/mol (5900.1301 without restraints) Performing minimization step: 3077. Total energy = 5913.0119 kcal/mol (5897.4093 without restraints) Performing minimization step: 3078. Total energy = 5910.2884 kcal/mol (5894.6905 without restraints) Performing minimization step: 3079. Total energy = 5907.5667 kcal/mol (5891.9735 without restraints) Performing minimization step: 3080. Total energy = 5904.8471 kcal/mol (5889.2585 without restraints) Performing minimization step: 3081. Total energy = 5902.1298 kcal/mol (5886.5459 without restraints) Performing minimization step: 3082. Total energy = 5899.4135 kcal/mol (5883.8343 without restraints) Performing minimization step: 3083. Total energy = 5896.6994 kcal/mol (5881.1249 without restraints) Performing minimization step: 3084. Total energy = 5893.9871 kcal/mol (5878.4171 without restraints) Performing minimization step: 3085. Total energy = 5891.2772 kcal/mol (5875.7119 without restraints) Performing minimization step: 3086. Total energy = 5888.5686 kcal/mol (5873.0081 without restraints) Performing minimization step: 3087. Total energy = 5885.8621 kcal/mol (5870.3062 without restraints) Performing minimization step: 3088. Total energy = 5883.1573 kcal/mol (5867.6059 without restraints) Performing minimization step: 3089. Total energy = 5880.4544 kcal/mol (5864.9078 without restraints) Performing minimization step: 3090. Total energy = 5877.7535 kcal/mol (5862.2116 without restraints) Performing minimization step: 3091. Total energy = 5875.0545 kcal/mol (5859.5175 without restraints) Performing minimization step: 3092. Total energy = 5872.3577 kcal/mol (5856.8250 without restraints) Performing minimization step: 3093. Total energy = 5869.6629 kcal/mol (5854.1349 without restraints) Performing minimization step: 3094. Total energy = 5866.9700 kcal/mol (5851.4466 without restraints) Performing minimization step: 3095. Total energy = 5864.2788 kcal/mol (5848.7601 without restraints) Performing minimization step: 3096. Total energy = 5861.5891 kcal/mol (5846.0751 without restraints) Performing minimization step: 3097. Total energy = 5858.9016 kcal/mol (5843.3922 without restraints) Performing minimization step: 3098. Total energy = 5856.2160 kcal/mol (5840.7113 without restraints) Performing minimization step: 3099. Total energy = 5853.5325 kcal/mol (5838.0324 without restraints) Performing minimization step: 3100. Total energy = 5850.8507 kcal/mol (5835.3552 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 5848.1706 kcal/mol (5832.6798 without restraints) Performing minimization step: 3102. Total energy = 5845.4926 kcal/mol (5830.0064 without restraints) Performing minimization step: 3103. Total energy = 5842.8165 kcal/mol (5827.3350 without restraints) Performing minimization step: 3104. Total energy = 5840.1423 kcal/mol (5824.6655 without restraints) Performing minimization step: 3105. Total energy = 5837.4699 kcal/mol (5821.9977 without restraints) Performing minimization step: 3106. Total energy = 5834.7997 kcal/mol (5819.3321 without restraints) Performing minimization step: 3107. Total energy = 5832.1315 kcal/mol (5816.6686 without restraints) Performing minimization step: 3108. Total energy = 5829.4651 kcal/mol (5814.0067 without restraints) Performing minimization step: 3109. Total energy = 5826.8004 kcal/mol (5811.3467 without restraints) Performing minimization step: 3110. Total energy = 5824.1383 kcal/mol (5808.6892 without restraints) Performing minimization step: 3111. Total energy = 5821.4775 kcal/mol (5806.0331 without restraints) Performing minimization step: 3112. Total energy = 5818.8188 kcal/mol (5803.3790 without restraints) Performing minimization step: 3113. Total energy = 5816.1620 kcal/mol (5800.7269 without restraints) Performing minimization step: 3114. Total energy = 5813.5073 kcal/mol (5798.0768 without restraints) Performing minimization step: 3115. Total energy = 5810.8547 kcal/mol (5795.4287 without restraints) Performing minimization step: 3116. Total energy = 5808.2038 kcal/mol (5792.7825 without restraints) Performing minimization step: 3117. Total energy = 5805.5546 kcal/mol (5790.1379 without restraints) Performing minimization step: 3118. Total energy = 5802.9074 kcal/mol (5787.4953 without restraints) Performing minimization step: 3119. Total energy = 5800.2623 kcal/mol (5784.8550 without restraints) Performing minimization step: 3120. Total energy = 5797.6193 kcal/mol (5782.2164 without restraints) Performing minimization step: 3121. Total energy = 5794.9781 kcal/mol (5779.5799 without restraints) Performing minimization step: 3122. Total energy = 5792.3387 kcal/mol (5776.9450 without restraints) Performing minimization step: 3123. Total energy = 5789.7009 kcal/mol (5774.3119 without restraints) Performing minimization step: 3124. Total energy = 5787.0653 kcal/mol (5771.6809 without restraints) Performing minimization step: 3125. Total energy = 5784.4314 kcal/mol (5769.0516 without restraints) Performing minimization step: 3126. Total energy = 5781.7994 kcal/mol (5766.4243 without restraints) Performing minimization step: 3127. Total energy = 5779.1696 kcal/mol (5763.7990 without restraints) Performing minimization step: 3128. Total energy = 5776.5414 kcal/mol (5761.1755 without restraints) Performing minimization step: 3129. Total energy = 5773.9152 kcal/mol (5758.5539 without restraints) Performing minimization step: 3130. Total energy = 5771.2911 kcal/mol (5755.9344 without restraints) Performing minimization step: 3131. Total energy = 5768.6690 kcal/mol (5753.3169 without restraints) Performing minimization step: 3132. Total energy = 5766.0491 kcal/mol (5750.7015 without restraints) Performing minimization step: 3133. Total energy = 5763.4309 kcal/mol (5748.0879 without restraints) Performing minimization step: 3134. Total energy = 5760.8147 kcal/mol (5745.4764 without restraints) Performing minimization step: 3135. Total energy = 5758.2002 kcal/mol (5742.8664 without restraints) Performing minimization step: 3136. Total energy = 5755.5876 kcal/mol (5740.2586 without restraints) Performing minimization step: 3137. Total energy = 5752.9770 kcal/mol (5737.6524 without restraints) Performing minimization step: 3138. Total energy = 5750.3687 kcal/mol (5735.0488 without restraints) Performing minimization step: 3139. Total energy = 5747.7620 kcal/mol (5732.4466 without restraints) Performing minimization step: 3140. Total energy = 5745.1571 kcal/mol (5729.8463 without restraints) Performing minimization step: 3141. Total energy = 5742.5544 kcal/mol (5727.2482 without restraints) Performing minimization step: 3142. Total energy = 5739.9536 kcal/mol (5724.6519 without restraints) Performing minimization step: 3143. Total energy = 5737.3546 kcal/mol (5722.0576 without restraints) Performing minimization step: 3144. Total energy = 5734.7575 kcal/mol (5719.4650 without restraints) Performing minimization step: 3145. Total energy = 5732.1623 kcal/mol (5716.8745 without restraints) Performing minimization step: 3146. Total energy = 5729.5691 kcal/mol (5714.2859 without restraints) Performing minimization step: 3147. Total energy = 5726.9783 kcal/mol (5711.6996 without restraints) Performing minimization step: 3148. Total energy = 5724.3890 kcal/mol (5709.1149 without restraints) Performing minimization step: 3149. Total energy = 5721.8017 kcal/mol (5706.5322 without restraints) Performing minimization step: 3150. Total energy = 5719.2163 kcal/mol (5703.9513 without restraints) Performing minimization step: 3151. Total energy = 5716.6327 kcal/mol (5701.3723 without restraints) Performing minimization step: 3152. Total energy = 5714.0510 kcal/mol (5698.7952 without restraints) Performing minimization step: 3153. Total energy = 5711.4715 kcal/mol (5696.2203 without restraints) Performing minimization step: 3154. Total energy = 5708.8943 kcal/mol (5693.6477 without restraints) Performing minimization step: 3155. Total energy = 5706.3186 kcal/mol (5691.0765 without restraints) Performing minimization step: 3156. Total energy = 5703.7447 kcal/mol (5688.5072 without restraints) Performing minimization step: 3157. Total energy = 5701.1726 kcal/mol (5685.9397 without restraints) Performing minimization step: 3158. Total energy = 5698.6027 kcal/mol (5683.3743 without restraints) Performing minimization step: 3159. Total energy = 5696.0349 kcal/mol (5680.8111 without restraints) Performing minimization step: 3160. Total energy = 5693.4689 kcal/mol (5678.2497 without restraints) Performing minimization step: 3161. Total energy = 5690.9046 kcal/mol (5675.6900 without restraints) Performing minimization step: 3162. Total energy = 5688.3430 kcal/mol (5673.1331 without restraints) Performing minimization step: 3163. Total energy = 5685.7830 kcal/mol (5670.5775 without restraints) Performing minimization step: 3164. Total energy = 5683.2250 kcal/mol (5668.0240 without restraints) Performing minimization step: 3165. Total energy = 5680.6689 kcal/mol (5665.4725 without restraints) Performing minimization step: 3166. Total energy = 5678.1150 kcal/mol (5662.9232 without restraints) Performing minimization step: 3167. Total energy = 5675.5629 kcal/mol (5660.3757 without restraints) Performing minimization step: 3168. Total energy = 5673.0126 kcal/mol (5657.8298 without restraints) Performing minimization step: 3169. Total energy = 5670.4639 kcal/mol (5655.2857 without restraints) Performing minimization step: 3170. Total energy = 5667.9180 kcal/mol (5652.7444 without restraints) Performing minimization step: 3171. Total energy = 5665.3736 kcal/mol (5650.2045 without restraints) Performing minimization step: 3172. Total energy = 5662.8314 kcal/mol (5647.6670 without restraints) Performing minimization step: 3173. Total energy = 5660.2909 kcal/mol (5645.1309 without restraints) Performing minimization step: 3174. Total energy = 5657.7525 kcal/mol (5642.5971 without restraints) Performing minimization step: 3175. Total energy = 5655.2158 kcal/mol (5640.0648 without restraints) Performing minimization step: 3176. Total energy = 5652.6816 kcal/mol (5637.5353 without restraints) Performing minimization step: 3177. Total energy = 5650.1490 kcal/mol (5635.0074 without restraints) Performing minimization step: 3178. Total energy = 5647.6184 kcal/mol (5632.4811 without restraints) Performing minimization step: 3179. Total energy = 5645.0895 kcal/mol (5629.9568 without restraints) Performing minimization step: 3180. Total energy = 5642.5629 kcal/mol (5627.4349 without restraints) Performing minimization step: 3181. Total energy = 5640.0384 kcal/mol (5624.9147 without restraints) Performing minimization step: 3182. Total energy = 5637.5152 kcal/mol (5622.3961 without restraints) Performing minimization step: 3183. Total energy = 5634.9945 kcal/mol (5619.8801 without restraints) Performing minimization step: 3184. Total energy = 5632.4754 kcal/mol (5617.3654 without restraints) Performing minimization step: 3185. Total energy = 5629.9585 kcal/mol (5614.8531 without restraints) Performing minimization step: 3186. Total energy = 5627.4433 kcal/mol (5612.3423 without restraints) Performing minimization step: 3187. Total energy = 5624.9303 kcal/mol (5609.8339 without restraints) Performing minimization step: 3188. Total energy = 5622.4190 kcal/mol (5607.3271 without restraints) Performing minimization step: 3189. Total energy = 5619.9100 kcal/mol (5604.8228 without restraints) Performing minimization step: 3190. Total energy = 5617.4030 kcal/mol (5602.3202 without restraints) Performing minimization step: 3191. Total energy = 5614.8979 kcal/mol (5599.8197 without restraints) Performing minimization step: 3192. Total energy = 5612.3946 kcal/mol (5597.3210 without restraints) Performing minimization step: 3193. Total energy = 5609.8936 kcal/mol (5594.8244 without restraints) Performing minimization step: 3194. Total energy = 5607.3941 kcal/mol (5592.3294 without restraints) Performing minimization step: 3195. Total energy = 5604.8969 kcal/mol (5589.8367 without restraints) Performing minimization step: 3196. Total energy = 5602.4017 kcal/mol (5587.3460 without restraints) Performing minimization step: 3197. Total energy = 5599.9085 kcal/mol (5584.8573 without restraints) Performing minimization step: 3198. Total energy = 5597.4171 kcal/mol (5582.3706 without restraints) Performing minimization step: 3199. Total energy = 5594.9278 kcal/mol (5579.8857 without restraints) Performing minimization step: 3200. Total energy = 5592.4403 kcal/mol (5577.4028 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 5589.9549 kcal/mol (5574.9218 without restraints) Performing minimization step: 3202. Total energy = 5587.4714 kcal/mol (5572.4428 without restraints) Performing minimization step: 3203. Total energy = 5584.9903 kcal/mol (5569.9662 without restraints) Performing minimization step: 3204. Total energy = 5582.5106 kcal/mol (5567.4911 without restraints) Performing minimization step: 3205. Total energy = 5580.0328 kcal/mol (5565.0178 without restraints) Performing minimization step: 3206. Total energy = 5577.5571 kcal/mol (5562.5466 without restraints) Performing minimization step: 3207. Total energy = 5575.0836 kcal/mol (5560.0776 without restraints) Performing minimization step: 3208. Total energy = 5572.6121 kcal/mol (5557.6106 without restraints) Performing minimization step: 3209. Total energy = 5570.1424 kcal/mol (5555.1455 without restraints) Performing minimization step: 3210. Total energy = 5567.6751 kcal/mol (5552.6827 without restraints) Performing minimization step: 3211. Total energy = 5565.2098 kcal/mol (5550.2219 without restraints) Performing minimization step: 3212. Total energy = 5562.7463 kcal/mol (5547.7631 without restraints) Performing minimization step: 3213. Total energy = 5560.2847 kcal/mol (5545.3058 without restraints) Performing minimization step: 3214. Total energy = 5557.8252 kcal/mol (5542.8510 without restraints) Performing minimization step: 3215. Total energy = 5555.3682 kcal/mol (5540.3982 without restraints) Performing minimization step: 3216. Total energy = 5552.9123 kcal/mol (5537.9469 without restraints) Performing minimization step: 3217. Total energy = 5550.4584 kcal/mol (5535.4974 without restraints) Performing minimization step: 3218. Total energy = 5548.0067 kcal/mol (5533.0502 without restraints) Performing minimization step: 3219. Total energy = 5545.5568 kcal/mol (5530.6049 without restraints) Performing minimization step: 3220. Total energy = 5543.1089 kcal/mol (5528.1615 without restraints) Performing minimization step: 3221. Total energy = 5540.6630 kcal/mol (5525.7202 without restraints) Performing minimization step: 3222. Total energy = 5538.2189 kcal/mol (5523.2805 without restraints) Performing minimization step: 3223. Total energy = 5535.7769 kcal/mol (5520.8430 without restraints) Performing minimization step: 3224. Total energy = 5533.3369 kcal/mol (5518.4074 without restraints) Performing minimization step: 3225. Total energy = 5530.8988 kcal/mol (5515.9738 without restraints) Performing minimization step: 3226. Total energy = 5528.4627 kcal/mol (5513.5422 without restraints) Performing minimization step: 3227. Total energy = 5526.0284 kcal/mol (5511.1124 without restraints) Performing minimization step: 3228. Total energy = 5523.5960 kcal/mol (5508.6845 without restraints) Performing minimization step: 3229. Total energy = 5521.1658 kcal/mol (5506.2587 without restraints) Performing minimization step: 3230. Total energy = 5518.7376 kcal/mol (5503.8349 without restraints) Performing minimization step: 3231. Total energy = 5516.3117 kcal/mol (5501.4137 without restraints) Performing minimization step: 3232. Total energy = 5513.8875 kcal/mol (5498.9939 without restraints) Performing minimization step: 3233. Total energy = 5511.4657 kcal/mol (5496.5766 without restraints) Performing minimization step: 3234. Total energy = 5509.0458 kcal/mol (5494.1613 without restraints) Performing minimization step: 3235. Total energy = 5506.6277 kcal/mol (5491.7475 without restraints) Performing minimization step: 3236. Total energy = 5504.2114 kcal/mol (5489.3357 without restraints) Performing minimization step: 3237. Total energy = 5501.7972 kcal/mol (5486.9259 without restraints) Performing minimization step: 3238. Total energy = 5499.3847 kcal/mol (5484.5180 without restraints) Performing minimization step: 3239. Total energy = 5496.9745 kcal/mol (5482.1123 without restraints) Performing minimization step: 3240. Total energy = 5494.5662 kcal/mol (5479.7084 without restraints) Performing minimization step: 3241. Total energy = 5492.1600 kcal/mol (5477.3067 without restraints) Performing minimization step: 3242. Total energy = 5489.7556 kcal/mol (5474.9067 without restraints) Performing minimization step: 3243. Total energy = 5487.3531 kcal/mol (5472.5088 without restraints) Performing minimization step: 3244. Total energy = 5484.9530 kcal/mol (5470.1133 without restraints) Performing minimization step: 3245. Total energy = 5482.5547 kcal/mol (5467.7192 without restraints) Performing minimization step: 3246. Total energy = 5480.1587 kcal/mol (5465.3278 without restraints) Performing minimization step: 3247. Total energy = 5477.7644 kcal/mol (5462.9380 without restraints) Performing minimization step: 3248. Total energy = 5475.3720 kcal/mol (5460.5500 without restraints) Performing minimization step: 3249. Total energy = 5472.9815 kcal/mol (5458.1639 without restraints) Performing minimization step: 3250. Total energy = 5470.5932 kcal/mol (5455.7803 without restraints) Performing minimization step: 3251. Total energy = 5468.2064 kcal/mol (5453.3978 without restraints) Performing minimization step: 3252. Total energy = 5465.8216 kcal/mol (5451.0175 without restraints) Performing minimization step: 3253. Total energy = 5463.4385 kcal/mol (5448.6387 without restraints) Performing minimization step: 3254. Total energy = 5461.0580 kcal/mol (5446.2628 without restraints) Performing minimization step: 3255. Total energy = 5458.6794 kcal/mol (5443.8885 without restraints) Performing minimization step: 3256. Total energy = 5456.3025 kcal/mol (5441.5162 without restraints) Performing minimization step: 3257. Total energy = 5453.9281 kcal/mol (5439.1463 without restraints) Performing minimization step: 3258. Total energy = 5451.5554 kcal/mol (5436.7780 without restraints) Performing minimization step: 3259. Total energy = 5449.1845 kcal/mol (5434.4114 without restraints) Performing minimization step: 3260. Total energy = 5446.8159 kcal/mol (5432.0474 without restraints) Performing minimization step: 3261. Total energy = 5444.4492 kcal/mol (5429.6852 without restraints) Performing minimization step: 3262. Total energy = 5442.0844 kcal/mol (5427.3248 without restraints) Performing minimization step: 3263. Total energy = 5439.7215 kcal/mol (5424.9663 without restraints) Performing minimization step: 3264. Total energy = 5437.3609 kcal/mol (5422.6102 without restraints) Performing minimization step: 3265. Total energy = 5435.0021 kcal/mol (5420.2559 without restraints) Performing minimization step: 3266. Total energy = 5432.6454 kcal/mol (5417.9035 without restraints) Performing minimization step: 3267. Total energy = 5430.2904 kcal/mol (5415.5530 without restraints) Performing minimization step: 3268. Total energy = 5427.9371 kcal/mol (5413.2042 without restraints) Performing minimization step: 3269. Total energy = 5425.5864 kcal/mol (5410.8579 without restraints) Performing minimization step: 3270. Total energy = 5423.2374 kcal/mol (5408.5134 without restraints) Performing minimization step: 3271. Total energy = 5420.8906 kcal/mol (5406.1710 without restraints) Performing minimization step: 3272. Total energy = 5418.5459 kcal/mol (5403.8307 without restraints) Performing minimization step: 3273. Total energy = 5416.2026 kcal/mol (5401.4919 without restraints) Performing minimization step: 3274. Total energy = 5413.8615 kcal/mol (5399.1551 without restraints) Performing minimization step: 3275. Total energy = 5411.5226 kcal/mol (5396.8206 without restraints) Performing minimization step: 3276. Total energy = 5409.1855 kcal/mol (5394.4881 without restraints) Performing minimization step: 3277. Total energy = 5406.8503 kcal/mol (5392.1572 without restraints) Performing minimization step: 3278. Total energy = 5404.5172 kcal/mol (5389.8286 without restraints) Performing minimization step: 3279. Total energy = 5402.1867 kcal/mol (5387.5026 without restraints) Performing minimization step: 3280. Total energy = 5399.8578 kcal/mol (5385.1782 without restraints) Performing minimization step: 3281. Total energy = 5397.5306 kcal/mol (5382.8553 without restraints) Performing minimization step: 3282. Total energy = 5395.2055 kcal/mol (5380.5346 without restraints) Performing minimization step: 3283. Total energy = 5392.8821 kcal/mol (5378.2156 without restraints) Performing minimization step: 3284. Total energy = 5390.5608 kcal/mol (5375.8988 without restraints) Performing minimization step: 3285. Total energy = 5388.2414 kcal/mol (5373.5838 without restraints) Performing minimization step: 3286. Total energy = 5385.9236 kcal/mol (5371.2705 without restraints) Performing minimization step: 3287. Total energy = 5383.6082 kcal/mol (5368.9596 without restraints) Performing minimization step: 3288. Total energy = 5381.2954 kcal/mol (5366.6510 without restraints) Performing minimization step: 3289. Total energy = 5378.9838 kcal/mol (5364.3438 without restraints) Performing minimization step: 3290. Total energy = 5376.6742 kcal/mol (5362.0386 without restraints) Performing minimization step: 3291. Total energy = 5374.3666 kcal/mol (5359.7355 without restraints) Performing minimization step: 3292. Total energy = 5372.0609 kcal/mol (5357.4342 without restraints) Performing minimization step: 3293. Total energy = 5369.7574 kcal/mol (5355.1351 without restraints) Performing minimization step: 3294. Total energy = 5367.4556 kcal/mol (5352.8377 without restraints) Performing minimization step: 3295. Total energy = 5365.1561 kcal/mol (5350.5426 without restraints) Performing minimization step: 3296. Total energy = 5362.8586 kcal/mol (5348.2497 without restraints) Performing minimization step: 3297. Total energy = 5360.5635 kcal/mol (5345.9589 without restraints) Performing minimization step: 3298. Total energy = 5358.2694 kcal/mol (5343.6691 without restraints) Performing minimization step: 3299. Total energy = 5355.9776 kcal/mol (5341.3820 without restraints) Performing minimization step: 3300. Total energy = 5353.6878 kcal/mol (5339.0963 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 5351.3997 kcal/mol (5336.8127 without restraints) Performing minimization step: 3302. Total energy = 5349.1140 kcal/mol (5334.5315 without restraints) Performing minimization step: 3303. Total energy = 5346.8301 kcal/mol (5332.2519 without restraints) Performing minimization step: 3304. Total energy = 5344.5477 kcal/mol (5329.9739 without restraints) Performing minimization step: 3305. Total energy = 5342.2677 kcal/mol (5327.6984 without restraints) Performing minimization step: 3306. Total energy = 5339.9893 kcal/mol (5325.4243 without restraints) Performing minimization step: 3307. Total energy = 5337.7134 kcal/mol (5323.1528 without restraints) Performing minimization step: 3308. Total energy = 5335.4393 kcal/mol (5320.8831 without restraints) Performing minimization step: 3309. Total energy = 5333.1673 kcal/mol (5318.6155 without restraints) Performing minimization step: 3310. Total energy = 5330.8973 kcal/mol (5316.3499 without restraints) Performing minimization step: 3311. Total energy = 5328.6292 kcal/mol (5314.0862 without restraints) Performing minimization step: 3312. Total energy = 5326.3631 kcal/mol (5311.8246 without restraints) Performing minimization step: 3313. Total energy = 5324.0990 kcal/mol (5309.5650 without restraints) Performing minimization step: 3314. Total energy = 5321.8368 kcal/mol (5307.3071 without restraints) Performing minimization step: 3315. Total energy = 5319.5772 kcal/mol (5305.0517 without restraints) Performing minimization step: 3316. Total energy = 5317.3185 kcal/mol (5302.7974 without restraints) Performing minimization step: 3317. Total energy = 5315.0617 kcal/mol (5300.5451 without restraints) Performing minimization step: 3318. Total energy = 5312.8073 kcal/mol (5298.2950 without restraints) Performing minimization step: 3319. Total energy = 5310.5545 kcal/mol (5296.0467 without restraints) Performing minimization step: 3320. Total energy = 5308.3040 kcal/mol (5293.8005 without restraints) Performing minimization step: 3321. Total energy = 5306.0550 kcal/mol (5291.5558 without restraints) Performing minimization step: 3322. Total energy = 5303.8080 kcal/mol (5289.3133 without restraints) Performing minimization step: 3323. Total energy = 5301.5631 kcal/mol (5287.0729 without restraints) Performing minimization step: 3324. Total energy = 5299.3204 kcal/mol (5284.8345 without restraints) Performing minimization step: 3325. Total energy = 5297.0798 kcal/mol (5282.5982 without restraints) Performing minimization step: 3326. Total energy = 5294.8407 kcal/mol (5280.3635 without restraints) Performing minimization step: 3327. Total energy = 5292.6038 kcal/mol (5278.1310 without restraints) Performing minimization step: 3328. Total energy = 5290.3686 kcal/mol (5275.9001 without restraints) Performing minimization step: 3329. Total energy = 5288.1350 kcal/mol (5273.6709 without restraints) Performing minimization step: 3330. Total energy = 5285.9040 kcal/mol (5271.4442 without restraints) Performing minimization step: 3331. Total energy = 5283.6749 kcal/mol (5269.2195 without restraints) Performing minimization step: 3332. Total energy = 5281.4474 kcal/mol (5266.9964 without restraints) Performing minimization step: 3333. Total energy = 5279.2221 kcal/mol (5264.7756 without restraints) Performing minimization step: 3334. Total energy = 5276.9990 kcal/mol (5262.5569 without restraints) Performing minimization step: 3335. Total energy = 5274.7777 kcal/mol (5260.3399 without restraints) Performing minimization step: 3336. Total energy = 5272.5584 kcal/mol (5258.1249 without restraints) Performing minimization step: 3337. Total energy = 5270.3407 kcal/mol (5255.9116 without restraints) Performing minimization step: 3338. Total energy = 5268.1249 kcal/mol (5253.7000 without restraints) Performing minimization step: 3339. Total energy = 5265.9110 kcal/mol (5251.4906 without restraints) Performing minimization step: 3340. Total energy = 5263.6993 kcal/mol (5249.2833 without restraints) Performing minimization step: 3341. Total energy = 5261.4901 kcal/mol (5247.0784 without restraints) Performing minimization step: 3342. Total energy = 5259.2821 kcal/mol (5244.8748 without restraints) Performing minimization step: 3343. Total energy = 5257.0760 kcal/mol (5242.6731 without restraints) Performing minimization step: 3344. Total energy = 5254.8719 kcal/mol (5240.4733 without restraints) Performing minimization step: 3345. Total energy = 5252.6702 kcal/mol (5238.2759 without restraints) Performing minimization step: 3346. Total energy = 5250.4703 kcal/mol (5236.0804 without restraints) Performing minimization step: 3347. Total energy = 5248.2720 kcal/mol (5233.8865 without restraints) Performing minimization step: 3348. Total energy = 5246.0759 kcal/mol (5231.6947 without restraints) Performing minimization step: 3349. Total energy = 5243.8814 kcal/mol (5229.5045 without restraints) Performing minimization step: 3350. Total energy = 5241.6891 kcal/mol (5227.3166 without restraints) Performing minimization step: 3351. Total energy = 5239.4986 kcal/mol (5225.1304 without restraints) Performing minimization step: 3352. Total energy = 5237.3100 kcal/mol (5222.9462 without restraints) Performing minimization step: 3353. Total energy = 5235.1240 kcal/mol (5220.7646 without restraints) Performing minimization step: 3354. Total energy = 5232.9392 kcal/mol (5218.5841 without restraints) Performing minimization step: 3355. Total energy = 5230.7562 kcal/mol (5216.4055 without restraints) Performing minimization step: 3356. Total energy = 5228.5755 kcal/mol (5214.2291 without restraints) Performing minimization step: 3357. Total energy = 5226.3965 kcal/mol (5212.0545 without restraints) Performing minimization step: 3358. Total energy = 5224.2193 kcal/mol (5209.8816 without restraints) Performing minimization step: 3359. Total energy = 5222.0442 kcal/mol (5207.7107 without restraints) Performing minimization step: 3360. Total energy = 5219.8706 kcal/mol (5205.5415 without restraints) Performing minimization step: 3361. Total energy = 5217.6992 kcal/mol (5203.3746 without restraints) Performing minimization step: 3362. Total energy = 5215.5298 kcal/mol (5201.2095 without restraints) Performing minimization step: 3363. Total energy = 5213.3623 kcal/mol (5199.0463 without restraints) Performing minimization step: 3364. Total energy = 5211.1967 kcal/mol (5196.8850 without restraints) Performing minimization step: 3365. Total energy = 5209.0329 kcal/mol (5194.7256 without restraints) Performing minimization step: 3366. Total energy = 5206.8710 kcal/mol (5192.5680 without restraints) Performing minimization step: 3367. Total energy = 5204.7111 kcal/mol (5190.4125 without restraints) Performing minimization step: 3368. Total energy = 5202.5536 kcal/mol (5188.2592 without restraints) Performing minimization step: 3369. Total energy = 5200.3978 kcal/mol (5186.1078 without restraints) Performing minimization step: 3370. Total energy = 5198.2437 kcal/mol (5183.9578 without restraints) Performing minimization step: 3371. Total energy = 5196.0913 kcal/mol (5181.8100 without restraints) Performing minimization step: 3372. Total energy = 5193.9410 kcal/mol (5179.6640 without restraints) Performing minimization step: 3373. Total energy = 5191.7927 kcal/mol (5177.5199 without restraints) Performing minimization step: 3374. Total energy = 5189.6464 kcal/mol (5175.3780 without restraints) Performing minimization step: 3375. Total energy = 5187.5021 kcal/mol (5173.2380 without restraints) Performing minimization step: 3376. Total energy = 5185.3596 kcal/mol (5171.0999 without restraints) Performing minimization step: 3377. Total energy = 5183.2191 kcal/mol (5168.9638 without restraints) Performing minimization step: 3378. Total energy = 5181.0804 kcal/mol (5166.8293 without restraints) Performing minimization step: 3379. Total energy = 5178.9440 kcal/mol (5164.6972 without restraints) Performing minimization step: 3380. Total energy = 5176.8090 kcal/mol (5162.5665 without restraints) Performing minimization step: 3381. Total energy = 5174.6759 kcal/mol (5160.4377 without restraints) Performing minimization step: 3382. Total energy = 5172.5445 kcal/mol (5158.3107 without restraints) Performing minimization step: 3383. Total energy = 5170.4154 kcal/mol (5156.1859 without restraints) Performing minimization step: 3384. Total energy = 5168.2887 kcal/mol (5154.0634 without restraints) Performing minimization step: 3385. Total energy = 5166.1630 kcal/mol (5151.9420 without restraints) Performing minimization step: 3386. Total energy = 5164.0396 kcal/mol (5149.8231 without restraints) Performing minimization step: 3387. Total energy = 5161.9182 kcal/mol (5147.7059 without restraints) Performing minimization step: 3388. Total energy = 5159.7983 kcal/mol (5145.5903 without restraints) Performing minimization step: 3389. Total energy = 5157.6805 kcal/mol (5143.4770 without restraints) Performing minimization step: 3390. Total energy = 5155.5645 kcal/mol (5141.3652 without restraints) Performing minimization step: 3391. Total energy = 5153.4501 kcal/mol (5139.2551 without restraints) Performing minimization step: 3392. Total energy = 5151.3383 kcal/mol (5137.1476 without restraints) Performing minimization step: 3393. Total energy = 5149.2282 kcal/mol (5135.0418 without restraints) Performing minimization step: 3394. Total energy = 5147.1196 kcal/mol (5132.9375 without restraints) Performing minimization step: 3395. Total energy = 5145.0134 kcal/mol (5130.8356 without restraints) Performing minimization step: 3396. Total energy = 5142.9092 kcal/mol (5128.7357 without restraints) Performing minimization step: 3397. Total energy = 5140.8065 kcal/mol (5126.6373 without restraints) Performing minimization step: 3398. Total energy = 5138.7062 kcal/mol (5124.5413 without restraints) Performing minimization step: 3399. Total energy = 5136.6073 kcal/mol (5122.4468 without restraints) Performing minimization step: 3400. Total energy = 5134.5103 kcal/mol (5120.3539 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 5132.4153 kcal/mol (5118.2633 without restraints) Performing minimization step: 3402. Total energy = 5130.3222 kcal/mol (5116.1744 without restraints) Performing minimization step: 3403. Total energy = 5128.2309 kcal/mol (5114.0874 without restraints) Performing minimization step: 3404. Total energy = 5126.1413 kcal/mol (5112.0022 without restraints) Performing minimization step: 3405. Total energy = 5124.0538 kcal/mol (5109.9190 without restraints) Performing minimization step: 3406. Total energy = 5121.9681 kcal/mol (5107.8375 without restraints) Performing minimization step: 3407. Total energy = 5119.8842 kcal/mol (5105.7580 without restraints) Performing minimization step: 3408. Total energy = 5117.8027 kcal/mol (5103.6809 without restraints) Performing minimization step: 3409. Total energy = 5115.7234 kcal/mol (5101.6059 without restraints) Performing minimization step: 3410. Total energy = 5113.6455 kcal/mol (5099.5322 without restraints) Performing minimization step: 3411. Total energy = 5111.5693 kcal/mol (5097.4602 without restraints) Performing minimization step: 3412. Total energy = 5109.4955 kcal/mol (5095.3907 without restraints) Performing minimization step: 3413. Total energy = 5107.4231 kcal/mol (5093.3227 without restraints) Performing minimization step: 3414. Total energy = 5105.3526 kcal/mol (5091.2563 without restraints) Performing minimization step: 3415. Total energy = 5103.2837 kcal/mol (5089.1917 without restraints) Performing minimization step: 3416. Total energy = 5101.2168 kcal/mol (5087.1290 without restraints) Performing minimization step: 3417. Total energy = 5099.1516 kcal/mol (5085.0682 without restraints) Performing minimization step: 3418. Total energy = 5097.0884 kcal/mol (5083.0092 without restraints) Performing minimization step: 3419. Total energy = 5095.0272 kcal/mol (5080.9523 without restraints) Performing minimization step: 3420. Total energy = 5092.9679 kcal/mol (5078.8973 without restraints) Performing minimization step: 3421. Total energy = 5090.9106 kcal/mol (5076.8442 without restraints) Performing minimization step: 3422. Total energy = 5088.8549 kcal/mol (5074.7928 without restraints) Performing minimization step: 3423. Total energy = 5086.8012 kcal/mol (5072.7433 without restraints) Performing minimization step: 3424. Total energy = 5084.7498 kcal/mol (5070.6963 without restraints) Performing minimization step: 3425. Total energy = 5082.6998 kcal/mol (5068.6506 without restraints) Performing minimization step: 3426. Total energy = 5080.6521 kcal/mol (5066.6071 without restraints) Performing minimization step: 3427. Total energy = 5078.6057 kcal/mol (5064.5649 without restraints) Performing minimization step: 3428. Total energy = 5076.5614 kcal/mol (5062.5250 without restraints) Performing minimization step: 3429. Total energy = 5074.5188 kcal/mol (5060.4866 without restraints) Performing minimization step: 3430. Total energy = 5072.4782 kcal/mol (5058.4503 without restraints) Performing minimization step: 3431. Total energy = 5070.4395 kcal/mol (5056.4158 without restraints) Performing minimization step: 3432. Total energy = 5068.4022 kcal/mol (5054.3827 without restraints) Performing minimization step: 3433. Total energy = 5066.3669 kcal/mol (5052.3516 without restraints) Performing minimization step: 3434. Total energy = 5064.3334 kcal/mol (5050.3225 without restraints) Performing minimization step: 3435. Total energy = 5062.3021 kcal/mol (5048.2955 without restraints) Performing minimization step: 3436. Total energy = 5060.2727 kcal/mol (5046.2706 without restraints) Performing minimization step: 3437. Total energy = 5058.2451 kcal/mol (5044.2469 without restraints) Performing minimization step: 3438. Total energy = 5056.2191 kcal/mol (5042.2252 without restraints) Performing minimization step: 3439. Total energy = 5054.1951 kcal/mol (5040.2055 without restraints) Performing minimization step: 3440. Total energy = 5052.1730 kcal/mol (5038.1875 without restraints) Performing minimization step: 3441. Total energy = 5050.1527 kcal/mol (5036.1716 without restraints) Performing minimization step: 3442. Total energy = 5048.1342 kcal/mol (5034.1573 without restraints) Performing minimization step: 3443. Total energy = 5046.1176 kcal/mol (5032.1450 without restraints) Performing minimization step: 3444. Total energy = 5044.1027 kcal/mol (5030.1343 without restraints) Performing minimization step: 3445. Total energy = 5042.0898 kcal/mol (5028.1257 without restraints) Performing minimization step: 3446. Total energy = 5040.0786 kcal/mol (5026.1187 without restraints) Performing minimization step: 3447. Total energy = 5038.0692 kcal/mol (5024.1135 without restraints) Performing minimization step: 3448. Total energy = 5036.0617 kcal/mol (5022.1103 without restraints) Performing minimization step: 3449. Total energy = 5034.0562 kcal/mol (5020.1090 without restraints) Performing minimization step: 3450. Total energy = 5032.0528 kcal/mol (5018.1101 without restraints) Performing minimization step: 3451. Total energy = 5030.0508 kcal/mol (5016.1121 without restraints) Performing minimization step: 3452. Total energy = 5028.0504 kcal/mol (5014.1159 without restraints) Performing minimization step: 3453. Total energy = 5026.0522 kcal/mol (5012.1220 without restraints) Performing minimization step: 3454. Total energy = 5024.0558 kcal/mol (5010.1299 without restraints) Performing minimization step: 3455. Total energy = 5022.0612 kcal/mol (5008.1394 without restraints) Performing minimization step: 3456. Total energy = 5020.0688 kcal/mol (5006.1514 without restraints) Performing minimization step: 3457. Total energy = 5018.0781 kcal/mol (5004.1649 without restraints) Performing minimization step: 3458. Total energy = 5016.0892 kcal/mol (5002.1802 without restraints) Performing minimization step: 3459. Total energy = 5014.1019 kcal/mol (5000.1971 without restraints) Performing minimization step: 3460. Total energy = 5012.1169 kcal/mol (4998.2163 without restraints) Performing minimization step: 3461. Total energy = 5010.1332 kcal/mol (4996.2369 without restraints) Performing minimization step: 3462. Total energy = 5008.1514 kcal/mol (4994.2592 without restraints) Performing minimization step: 3463. Total energy = 5006.1716 kcal/mol (4992.2837 without restraints) Performing minimization step: 3464. Total energy = 5004.1934 kcal/mol (4990.3097 without restraints) Performing minimization step: 3465. Total energy = 5002.2169 kcal/mol (4988.3375 without restraints) Performing minimization step: 3466. Total energy = 5000.2425 kcal/mol (4986.3672 without restraints) Performing minimization step: 3467. Total energy = 4998.2697 kcal/mol (4984.3987 without restraints) Performing minimization step: 3468. Total energy = 4996.2988 kcal/mol (4982.4322 without restraints) Performing minimization step: 3469. Total energy = 4994.3299 kcal/mol (4980.4673 without restraints) Performing minimization step: 3470. Total energy = 4992.3627 kcal/mol (4978.5043 without restraints) Performing minimization step: 3471. Total energy = 4990.3977 kcal/mol (4976.5436 without restraints) Performing minimization step: 3472. Total energy = 4988.4341 kcal/mol (4974.5842 without restraints) Performing minimization step: 3473. Total energy = 4986.4724 kcal/mol (4972.6267 without restraints) Performing minimization step: 3474. Total energy = 4984.5124 kcal/mol (4970.6709 without restraints) Performing minimization step: 3475. Total energy = 4982.5543 kcal/mol (4968.7170 without restraints) Performing minimization step: 3476. Total energy = 4980.5980 kcal/mol (4966.7649 without restraints) Performing minimization step: 3477. Total energy = 4978.6437 kcal/mol (4964.8150 without restraints) Performing minimization step: 3478. Total energy = 4976.6915 kcal/mol (4962.8669 without restraints) Performing minimization step: 3479. Total energy = 4974.7407 kcal/mol (4960.9202 without restraints) Performing minimization step: 3480. Total energy = 4972.7916 kcal/mol (4958.9754 without restraints) Performing minimization step: 3481. Total energy = 4970.8447 kcal/mol (4957.0327 without restraints) Performing minimization step: 3482. Total energy = 4968.8992 kcal/mol (4955.0914 without restraints) Performing minimization step: 3483. Total energy = 4966.9556 kcal/mol (4953.1519 without restraints) Performing minimization step: 3484. Total energy = 4965.0137 kcal/mol (4951.2142 without restraints) Performing minimization step: 3485. Total energy = 4963.0739 kcal/mol (4949.2787 without restraints) Performing minimization step: 3486. Total energy = 4961.1358 kcal/mol (4947.3449 without restraints) Performing minimization step: 3487. Total energy = 4959.1999 kcal/mol (4945.4131 without restraints) Performing minimization step: 3488. Total energy = 4957.2653 kcal/mol (4943.4827 without restraints) Performing minimization step: 3489. Total energy = 4955.3331 kcal/mol (4941.5547 without restraints) Performing minimization step: 3490. Total energy = 4953.4020 kcal/mol (4939.6278 without restraints) Performing minimization step: 3491. Total energy = 4951.4729 kcal/mol (4937.7030 without restraints) Performing minimization step: 3492. Total energy = 4949.5457 kcal/mol (4935.7799 without restraints) Performing minimization step: 3493. Total energy = 4947.6201 kcal/mol (4933.8585 without restraints) Performing minimization step: 3494. Total energy = 4945.6965 kcal/mol (4931.9391 without restraints) Performing minimization step: 3495. Total energy = 4943.7746 kcal/mol (4930.0214 without restraints) Performing minimization step: 3496. Total energy = 4941.8548 kcal/mol (4928.1058 without restraints) Performing minimization step: 3497. Total energy = 4939.9366 kcal/mol (4926.1917 without restraints) Performing minimization step: 3498. Total energy = 4938.0199 kcal/mol (4924.2792 without restraints) Performing minimization step: 3499. Total energy = 4936.1052 kcal/mol (4922.3687 without restraints) Performing minimization step: 3500. Total energy = 4934.1921 kcal/mol (4920.4597 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 4932.2809 kcal/mol (4918.5527 without restraints) Performing minimization step: 3502. Total energy = 4930.3712 kcal/mol (4916.6472 without restraints) Performing minimization step: 3503. Total energy = 4928.4638 kcal/mol (4914.7440 without restraints) Performing minimization step: 3504. Total energy = 4926.5578 kcal/mol (4912.8422 without restraints) Performing minimization step: 3505. Total energy = 4924.6536 kcal/mol (4910.9422 without restraints) Performing minimization step: 3506. Total energy = 4922.7515 kcal/mol (4909.0444 without restraints) Performing minimization step: 3507. Total energy = 4920.8513 kcal/mol (4907.1483 without restraints) Performing minimization step: 3508. Total energy = 4918.9522 kcal/mol (4905.2533 without restraints) Performing minimization step: 3509. Total energy = 4917.0554 kcal/mol (4903.3607 without restraints) Performing minimization step: 3510. Total energy = 4915.1600 kcal/mol (4901.4695 without restraints) Performing minimization step: 3511. Total energy = 4913.2670 kcal/mol (4899.5806 without restraints) Performing minimization step: 3512. Total energy = 4911.3752 kcal/mol (4897.6930 without restraints) Performing minimization step: 3513. Total energy = 4909.4852 kcal/mol (4895.8072 without restraints) Performing minimization step: 3514. Total energy = 4907.5968 kcal/mol (4893.9229 without restraints) Performing minimization step: 3515. Total energy = 4905.7107 kcal/mol (4892.0412 without restraints) Performing minimization step: 3516. Total energy = 4903.8260 kcal/mol (4890.1605 without restraints) Performing minimization step: 3517. Total energy = 4901.9431 kcal/mol (4888.2818 without restraints) Performing minimization step: 3518. Total energy = 4900.0621 kcal/mol (4886.4050 without restraints) Performing minimization step: 3519. Total energy = 4898.1830 kcal/mol (4884.5299 without restraints) Performing minimization step: 3520. Total energy = 4896.3055 kcal/mol (4882.6567 without restraints) Performing minimization step: 3521. Total energy = 4894.4297 kcal/mol (4880.7850 without restraints) Performing minimization step: 3522. Total energy = 4892.5556 kcal/mol (4878.9151 without restraints) Performing minimization step: 3523. Total energy = 4890.6832 kcal/mol (4877.0468 without restraints) Performing minimization step: 3524. Total energy = 4888.8126 kcal/mol (4875.1804 without restraints) Performing minimization step: 3525. Total energy = 4886.9438 kcal/mol (4873.3157 without restraints) Performing minimization step: 3526. Total energy = 4885.0768 kcal/mol (4871.4529 without restraints) Performing minimization step: 3527. Total energy = 4883.2116 kcal/mol (4869.5918 without restraints) Performing minimization step: 3528. Total energy = 4881.3483 kcal/mol (4867.7326 without restraints) Performing minimization step: 3529. Total energy = 4879.4866 kcal/mol (4865.8752 without restraints) Performing minimization step: 3530. Total energy = 4877.6270 kcal/mol (4864.0197 without restraints) Performing minimization step: 3531. Total energy = 4875.7692 kcal/mol (4862.1660 without restraints) Performing minimization step: 3532. Total energy = 4873.9127 kcal/mol (4860.3136 without restraints) Performing minimization step: 3533. Total energy = 4872.0585 kcal/mol (4858.4637 without restraints) Performing minimization step: 3534. Total energy = 4870.2056 kcal/mol (4856.6149 without restraints) Performing minimization step: 3535. Total energy = 4868.3547 kcal/mol (4854.7681 without restraints) Performing minimization step: 3536. Total energy = 4866.5055 kcal/mol (4852.9231 without restraints) Performing minimization step: 3537. Total energy = 4864.6578 kcal/mol (4851.0795 without restraints) Performing minimization step: 3538. Total energy = 4862.8119 kcal/mol (4849.2378 without restraints) Performing minimization step: 3539. Total energy = 4860.9681 kcal/mol (4847.3982 without restraints) Performing minimization step: 3540. Total energy = 4859.1257 kcal/mol (4845.5598 without restraints) Performing minimization step: 3541. Total energy = 4857.2851 kcal/mol (4843.7234 without restraints) Performing minimization step: 3542. Total energy = 4855.4460 kcal/mol (4841.8884 without restraints) Performing minimization step: 3543. Total energy = 4853.6088 kcal/mol (4840.0554 without restraints) Performing minimization step: 3544. Total energy = 4851.7734 kcal/mol (4838.2240 without restraints) Performing minimization step: 3545. Total energy = 4849.9399 kcal/mol (4836.3947 without restraints) Performing minimization step: 3546. Total energy = 4848.1078 kcal/mol (4834.5668 without restraints) Performing minimization step: 3547. Total energy = 4846.2775 kcal/mol (4832.7406 without restraints) Performing minimization step: 3548. Total energy = 4844.4491 kcal/mol (4830.9164 without restraints) Performing minimization step: 3549. Total energy = 4842.6227 kcal/mol (4829.0941 without restraints) Performing minimization step: 3550. Total energy = 4840.7976 kcal/mol (4827.2730 without restraints) Performing minimization step: 3551. Total energy = 4838.9748 kcal/mol (4825.4544 without restraints) Performing minimization step: 3552. Total energy = 4837.1533 kcal/mol (4823.6370 without restraints) Performing minimization step: 3553. Total energy = 4835.3333 kcal/mol (4821.8213 without restraints) Performing minimization step: 3554. Total energy = 4833.5160 kcal/mol (4820.0078 without restraints) Performing minimization step: 3555. Total energy = 4831.6995 kcal/mol (4818.1956 without restraints) Performing minimization step: 3556. Total energy = 4829.8849 kcal/mol (4816.3851 without restraints) Performing minimization step: 3557. Total energy = 4828.0719 kcal/mol (4814.5762 without restraints) Performing minimization step: 3558. Total energy = 4826.2607 kcal/mol (4812.7692 without restraints) Performing minimization step: 3559. Total energy = 4824.4511 kcal/mol (4810.9635 without restraints) Performing minimization step: 3560. Total energy = 4822.6435 kcal/mol (4809.1603 without restraints) Performing minimization step: 3561. Total energy = 4820.8370 kcal/mol (4807.3577 without restraints) Performing minimization step: 3562. Total energy = 4819.0330 kcal/mol (4805.5579 without restraints) Performing minimization step: 3563. Total energy = 4817.2309 kcal/mol (4803.7599 without restraints) Performing minimization step: 3564. Total energy = 4815.4300 kcal/mol (4801.9631 without restraints) Performing minimization step: 3565. Total energy = 4813.6305 kcal/mol (4800.1678 without restraints) Performing minimization step: 3566. Total energy = 4811.8330 kcal/mol (4798.3744 without restraints) Performing minimization step: 3567. Total energy = 4810.0371 kcal/mol (4796.5826 without restraints) Performing minimization step: 3568. Total energy = 4808.2432 kcal/mol (4794.7930 without restraints) Performing minimization step: 3569. Total energy = 4806.4515 kcal/mol (4793.0051 without restraints) Performing minimization step: 3570. Total energy = 4804.6608 kcal/mol (4791.2186 without restraints) Performing minimization step: 3571. Total energy = 4802.8719 kcal/mol (4789.4338 without restraints) Performing minimization step: 3572. Total energy = 4801.0849 kcal/mol (4787.6509 without restraints) Performing minimization step: 3573. Total energy = 4799.2993 kcal/mol (4785.8693 without restraints) Performing minimization step: 3574. Total energy = 4797.5157 kcal/mol (4784.0899 without restraints) Performing minimization step: 3575. Total energy = 4795.7336 kcal/mol (4782.3119 without restraints) Performing minimization step: 3576. Total energy = 4793.9536 kcal/mol (4780.5360 without restraints) Performing minimization step: 3577. Total energy = 4792.1749 kcal/mol (4778.7613 without restraints) Performing minimization step: 3578. Total energy = 4790.3978 kcal/mol (4776.9884 without restraints) Performing minimization step: 3579. Total energy = 4788.6227 kcal/mol (4775.2173 without restraints) Performing minimization step: 3580. Total energy = 4786.8495 kcal/mol (4773.4484 without restraints) Performing minimization step: 3581. Total energy = 4785.0783 kcal/mol (4771.6814 without restraints) Performing minimization step: 3582. Total energy = 4783.3084 kcal/mol (4769.9154 without restraints) Performing minimization step: 3583. Total energy = 4781.5397 kcal/mol (4768.1508 without restraints) Performing minimization step: 3584. Total energy = 4779.7730 kcal/mol (4766.3881 without restraints) Performing minimization step: 3585. Total energy = 4778.0086 kcal/mol (4764.6282 without restraints) Performing minimization step: 3586. Total energy = 4776.2456 kcal/mol (4762.8689 without restraints) Performing minimization step: 3587. Total energy = 4774.4840 kcal/mol (4761.1116 without restraints) Performing minimization step: 3588. Total energy = 4772.7245 kcal/mol (4759.3561 without restraints) Performing minimization step: 3589. Total energy = 4770.9664 kcal/mol (4757.6019 without restraints) Performing minimization step: 3590. Total energy = 4769.2099 kcal/mol (4755.8496 without restraints) Performing minimization step: 3591. Total energy = 4767.4553 kcal/mol (4754.0990 without restraints) Performing minimization step: 3592. Total energy = 4765.7020 kcal/mol (4752.3498 without restraints) Performing minimization step: 3593. Total energy = 4763.9503 kcal/mol (4750.6020 without restraints) Performing minimization step: 3594. Total energy = 4762.2004 kcal/mol (4748.8564 without restraints) Performing minimization step: 3595. Total energy = 4760.4521 kcal/mol (4747.1122 without restraints) Performing minimization step: 3596. Total energy = 4758.7056 kcal/mol (4745.3697 without restraints) Performing minimization step: 3597. Total energy = 4756.9610 kcal/mol (4743.6292 without restraints) Performing minimization step: 3598. Total energy = 4755.2188 kcal/mol (4741.8911 without restraints) Performing minimization step: 3599. Total energy = 4753.4776 kcal/mol (4740.1541 without restraints) Performing minimization step: 3600. Total energy = 4751.7382 kcal/mol (4738.4186 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 4750.0002 kcal/mol (4736.6849 without restraints) Performing minimization step: 3602. Total energy = 4748.2643 kcal/mol (4734.9529 without restraints) Performing minimization step: 3603. Total energy = 4746.5297 kcal/mol (4733.2224 without restraints) Performing minimization step: 3604. Total energy = 4744.7967 kcal/mol (4731.4934 without restraints) Performing minimization step: 3605. Total energy = 4743.0655 kcal/mol (4729.7665 without restraints) Performing minimization step: 3606. Total energy = 4741.3365 kcal/mol (4728.0414 without restraints) Performing minimization step: 3607. Total energy = 4739.6081 kcal/mol (4726.3169 without restraints) Performing minimization step: 3608. Total energy = 4737.8816 kcal/mol (4724.5946 without restraints) Performing minimization step: 3609. Total energy = 4736.1569 kcal/mol (4722.8739 without restraints) Performing minimization step: 3610. Total energy = 4734.4343 kcal/mol (4721.1553 without restraints) Performing minimization step: 3611. Total energy = 4732.7129 kcal/mol (4719.4380 without restraints) Performing minimization step: 3612. Total energy = 4730.9937 kcal/mol (4717.7231 without restraints) Performing minimization step: 3613. Total energy = 4729.2761 kcal/mol (4716.0094 without restraints) Performing minimization step: 3614. Total energy = 4727.5602 kcal/mol (4714.2976 without restraints) Performing minimization step: 3615. Total energy = 4725.8455 kcal/mol (4712.5869 without restraints) Performing minimization step: 3616. Total energy = 4724.1328 kcal/mol (4710.8782 without restraints) Performing minimization step: 3617. Total energy = 4722.4215 kcal/mol (4709.1709 without restraints) Performing minimization step: 3618. Total energy = 4720.7117 kcal/mol (4707.4652 without restraints) Performing minimization step: 3619. Total energy = 4719.0036 kcal/mol (4705.7612 without restraints) Performing minimization step: 3620. Total energy = 4717.2974 kcal/mol (4704.0590 without restraints) Performing minimization step: 3621. Total energy = 4715.5929 kcal/mol (4702.3587 without restraints) Performing minimization step: 3622. Total energy = 4713.8900 kcal/mol (4700.6598 without restraints) Performing minimization step: 3623. Total energy = 4712.1887 kcal/mol (4698.9624 without restraints) Performing minimization step: 3624. Total energy = 4710.4890 kcal/mol (4697.2668 without restraints) Performing minimization step: 3625. Total energy = 4708.7908 kcal/mol (4695.5727 without restraints) Performing minimization step: 3626. Total energy = 4707.0945 kcal/mol (4693.8805 without restraints) Performing minimization step: 3627. Total energy = 4705.3996 kcal/mol (4692.1894 without restraints) Performing minimization step: 3628. Total energy = 4703.7067 kcal/mol (4690.5009 without restraints) Performing minimization step: 3629. Total energy = 4702.0152 kcal/mol (4688.8132 without restraints) Performing minimization step: 3630. Total energy = 4700.3255 kcal/mol (4687.1275 without restraints) Performing minimization step: 3631. Total energy = 4698.6372 kcal/mol (4685.4433 without restraints) Performing minimization step: 3632. Total energy = 4696.9505 kcal/mol (4683.7606 without restraints) Performing minimization step: 3633. Total energy = 4695.2655 kcal/mol (4682.0797 without restraints) Performing minimization step: 3634. Total energy = 4693.5825 kcal/mol (4680.4007 without restraints) Performing minimization step: 3635. Total energy = 4691.9008 kcal/mol (4678.7230 without restraints) Performing minimization step: 3636. Total energy = 4690.2207 kcal/mol (4677.0469 without restraints) Performing minimization step: 3637. Total energy = 4688.5422 kcal/mol (4675.3725 without restraints) Performing minimization step: 3638. Total energy = 4686.8654 kcal/mol (4673.6996 without restraints) Performing minimization step: 3639. Total energy = 4685.1899 kcal/mol (4672.0283 without restraints) Performing minimization step: 3640. Total energy = 4683.5162 kcal/mol (4670.3586 without restraints) Performing minimization step: 3641. Total energy = 4681.8445 kcal/mol (4668.6909 without restraints) Performing minimization step: 3642. Total energy = 4680.1749 kcal/mol (4667.0253 without restraints) Performing minimization step: 3643. Total energy = 4678.5060 kcal/mol (4665.3605 without restraints) Performing minimization step: 3644. Total energy = 4676.8384 kcal/mol (4663.6969 without restraints) Performing minimization step: 3645. Total energy = 4675.1734 kcal/mol (4662.0359 without restraints) Performing minimization step: 3646. Total energy = 4673.5097 kcal/mol (4660.3762 without restraints) Performing minimization step: 3647. Total energy = 4671.8476 kcal/mol (4658.7182 without restraints) Performing minimization step: 3648. Total energy = 4670.1867 kcal/mol (4657.0613 without restraints) Performing minimization step: 3649. Total energy = 4668.5279 kcal/mol (4655.4065 without restraints) Performing minimization step: 3650. Total energy = 4666.8705 kcal/mol (4653.7530 without restraints) Performing minimization step: 3651. Total energy = 4665.2151 kcal/mol (4652.1017 without restraints) Performing minimization step: 3652. Total energy = 4663.5616 kcal/mol (4650.4523 without restraints) Performing minimization step: 3653. Total energy = 4661.9096 kcal/mol (4648.8043 without restraints) Performing minimization step: 3654. Total energy = 4660.2586 kcal/mol (4647.1572 without restraints) Performing minimization step: 3655. Total energy = 4658.6100 kcal/mol (4645.5127 without restraints) Performing minimization step: 3656. Total energy = 4656.9629 kcal/mol (4643.8696 without restraints) Performing minimization step: 3657. Total energy = 4655.3168 kcal/mol (4642.2275 without restraints) Performing minimization step: 3658. Total energy = 4653.6729 kcal/mol (4640.5876 without restraints) Performing minimization step: 3659. Total energy = 4652.0303 kcal/mol (4638.9489 without restraints) Performing minimization step: 3660. Total energy = 4650.3896 kcal/mol (4637.3123 without restraints) Performing minimization step: 3661. Total energy = 4648.7503 kcal/mol (4635.6770 without restraints) Performing minimization step: 3662. Total energy = 4647.1125 kcal/mol (4634.0433 without restraints) Performing minimization step: 3663. Total energy = 4645.4766 kcal/mol (4632.4114 without restraints) Performing minimization step: 3664. Total energy = 4643.8421 kcal/mol (4630.7808 without restraints) Performing minimization step: 3665. Total energy = 4642.2087 kcal/mol (4629.1514 without restraints) Performing minimization step: 3666. Total energy = 4640.5773 kcal/mol (4627.5241 without restraints) Performing minimization step: 3667. Total energy = 4638.9478 kcal/mol (4625.8985 without restraints) Performing minimization step: 3668. Total energy = 4637.3203 kcal/mol (4624.2750 without restraints) Performing minimization step: 3669. Total energy = 4635.6939 kcal/mol (4622.6525 without restraints) Performing minimization step: 3670. Total energy = 4634.0684 kcal/mol (4621.0313 without restraints) Performing minimization step: 3671. Total energy = 4632.4451 kcal/mol (4619.4118 without restraints) Performing minimization step: 3672. Total energy = 4630.8236 kcal/mol (4617.7942 without restraints) Performing minimization step: 3673. Total energy = 4629.2031 kcal/mol (4616.1777 without restraints) Performing minimization step: 3674. Total energy = 4627.5846 kcal/mol (4614.5633 without restraints) Performing minimization step: 3675. Total energy = 4625.9677 kcal/mol (4612.9503 without restraints) Performing minimization step: 3676. Total energy = 4624.3521 kcal/mol (4611.3387 without restraints) Performing minimization step: 3677. Total energy = 4622.7383 kcal/mol (4609.7289 without restraints) Performing minimization step: 3678. Total energy = 4621.1262 kcal/mol (4608.1207 without restraints) Performing minimization step: 3679. Total energy = 4619.5155 kcal/mol (4606.5141 without restraints) Performing minimization step: 3680. Total energy = 4617.9064 kcal/mol (4604.9089 without restraints) Performing minimization step: 3681. Total energy = 4616.2992 kcal/mol (4603.3057 without restraints) Performing minimization step: 3682. Total energy = 4614.6937 kcal/mol (4601.7042 without restraints) Performing minimization step: 3683. Total energy = 4613.0894 kcal/mol (4600.1038 without restraints) Performing minimization step: 3684. Total energy = 4611.4866 kcal/mol (4598.5050 without restraints) Performing minimization step: 3685. Total energy = 4609.8856 kcal/mol (4596.9080 without restraints) Performing minimization step: 3686. Total energy = 4608.2862 kcal/mol (4595.3126 without restraints) Performing minimization step: 3687. Total energy = 4606.6888 kcal/mol (4593.7192 without restraints) Performing minimization step: 3688. Total energy = 4605.0924 kcal/mol (4592.1268 without restraints) Performing minimization step: 3689. Total energy = 4603.4981 kcal/mol (4590.5365 without restraints) Performing minimization step: 3690. Total energy = 4601.9055 kcal/mol (4588.9479 without restraints) Performing minimization step: 3691. Total energy = 4600.3139 kcal/mol (4587.3602 without restraints) Performing minimization step: 3692. Total energy = 4598.7241 kcal/mol (4585.7743 without restraints) Performing minimization step: 3693. Total energy = 4597.1358 kcal/mol (4584.1901 without restraints) Performing minimization step: 3694. Total energy = 4595.5492 kcal/mol (4582.6073 without restraints) Performing minimization step: 3695. Total energy = 4593.9639 kcal/mol (4581.0261 without restraints) Performing minimization step: 3696. Total energy = 4592.3805 kcal/mol (4579.4466 without restraints) Performing minimization step: 3697. Total energy = 4590.7985 kcal/mol (4577.8686 without restraints) Performing minimization step: 3698. Total energy = 4589.2181 kcal/mol (4576.2921 without restraints) Performing minimization step: 3699. Total energy = 4587.6392 kcal/mol (4574.7172 without restraints) Performing minimization step: 3700. Total energy = 4586.0618 kcal/mol (4573.1438 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 4584.4859 kcal/mol (4571.5719 without restraints) Performing minimization step: 3702. Total energy = 4582.9121 kcal/mol (4570.0019 without restraints) Performing minimization step: 3703. Total energy = 4581.3393 kcal/mol (4568.4331 without restraints) Performing minimization step: 3704. Total energy = 4579.7689 kcal/mol (4566.8669 without restraints) Performing minimization step: 3705. Total energy = 4578.1997 kcal/mol (4565.3014 without restraints) Performing minimization step: 3706. Total energy = 4576.6316 kcal/mol (4563.7373 without restraints) Performing minimization step: 3707. Total energy = 4575.0652 kcal/mol (4562.1748 without restraints) Performing minimization step: 3708. Total energy = 4573.5005 kcal/mol (4560.6140 without restraints) Performing minimization step: 3709. Total energy = 4571.9376 kcal/mol (4559.0551 without restraints) Performing minimization step: 3710. Total energy = 4570.3757 kcal/mol (4557.4971 without restraints) Performing minimization step: 3711. Total energy = 4568.8153 kcal/mol (4555.9407 without restraints) Performing minimization step: 3712. Total energy = 4567.2566 kcal/mol (4554.3860 without restraints) Performing minimization step: 3713. Total energy = 4565.6995 kcal/mol (4552.8328 without restraints) Performing minimization step: 3714. Total energy = 4564.1439 kcal/mol (4551.2811 without restraints) Performing minimization step: 3715. Total energy = 4562.5898 kcal/mol (4549.7310 without restraints) Performing minimization step: 3716. Total energy = 4561.0377 kcal/mol (4548.1831 without restraints) Performing minimization step: 3717. Total energy = 4559.4875 kcal/mol (4546.6365 without restraints) Performing minimization step: 3718. Total energy = 4557.9378 kcal/mol (4545.0910 without restraints) Performing minimization step: 3719. Total energy = 4556.3903 kcal/mol (4543.5472 without restraints) Performing minimization step: 3720. Total energy = 4554.8441 kcal/mol (4542.0051 without restraints) Performing minimization step: 3721. Total energy = 4553.3002 kcal/mol (4540.4651 without restraints) Performing minimization step: 3722. Total energy = 4551.7570 kcal/mol (4538.9258 without restraints) Performing minimization step: 3723. Total energy = 4550.2154 kcal/mol (4537.3882 without restraints) Performing minimization step: 3724. Total energy = 4548.6754 kcal/mol (4535.8520 without restraints) Performing minimization step: 3725. Total energy = 4547.1366 kcal/mol (4534.3171 without restraints) Performing minimization step: 3726. Total energy = 4545.5999 kcal/mol (4532.7846 without restraints) Performing minimization step: 3727. Total energy = 4544.0647 kcal/mol (4531.2532 without restraints) Performing minimization step: 3728. Total energy = 4542.5307 kcal/mol (4529.7231 without restraints) Performing minimization step: 3729. Total energy = 4540.9983 kcal/mol (4528.1945 without restraints) Performing minimization step: 3730. Total energy = 4539.4676 kcal/mol (4526.6678 without restraints) Performing minimization step: 3731. Total energy = 4537.9385 kcal/mol (4525.1426 without restraints) Performing minimization step: 3732. Total energy = 4536.4115 kcal/mol (4523.6196 without restraints) Performing minimization step: 3733. Total energy = 4534.8853 kcal/mol (4522.0974 without restraints) Performing minimization step: 3734. Total energy = 4533.3611 kcal/mol (4520.5770 without restraints) Performing minimization step: 3735. Total energy = 4531.8381 kcal/mol (4519.0579 without restraints) Performing minimization step: 3736. Total energy = 4530.3161 kcal/mol (4517.5398 without restraints) Performing minimization step: 3737. Total energy = 4528.7961 kcal/mol (4516.0239 without restraints) Performing minimization step: 3738. Total energy = 4527.2778 kcal/mol (4514.5094 without restraints) Performing minimization step: 3739. Total energy = 4525.7605 kcal/mol (4512.9960 without restraints) Performing minimization step: 3740. Total energy = 4524.2449 kcal/mol (4511.4843 without restraints) Performing minimization step: 3741. Total energy = 4522.7311 kcal/mol (4509.9745 without restraints) Performing minimization step: 3742. Total energy = 4521.2184 kcal/mol (4508.4656 without restraints) Performing minimization step: 3743. Total energy = 4519.7074 kcal/mol (4506.9586 without restraints) Performing minimization step: 3744. Total energy = 4518.1979 kcal/mol (4505.4530 without restraints) Performing minimization step: 3745. Total energy = 4516.6899 kcal/mol (4503.9489 without restraints) Performing minimization step: 3746. Total energy = 4515.1834 kcal/mol (4502.4463 without restraints) Performing minimization step: 3747. Total energy = 4513.6785 kcal/mol (4500.9452 without restraints) Performing minimization step: 3748. Total energy = 4512.1749 kcal/mol (4499.4456 without restraints) Performing minimization step: 3749. Total energy = 4510.6733 kcal/mol (4497.9479 without restraints) Performing minimization step: 3750. Total energy = 4509.1732 kcal/mol (4496.4518 without restraints) Performing minimization step: 3751. Total energy = 4507.6746 kcal/mol (4494.9570 without restraints) Performing minimization step: 3752. Total energy = 4506.1775 kcal/mol (4493.4638 without restraints) Performing minimization step: 3753. Total energy = 4504.6815 kcal/mol (4491.9717 without restraints) Performing minimization step: 3754. Total energy = 4503.1875 kcal/mol (4490.4816 without restraints) Performing minimization step: 3755. Total energy = 4501.6948 kcal/mol (4488.9928 without restraints) Performing minimization step: 3756. Total energy = 4500.2041 kcal/mol (4487.5060 without restraints) Performing minimization step: 3757. Total energy = 4498.7145 kcal/mol (4486.0205 without restraints) Performing minimization step: 3758. Total energy = 4497.2268 kcal/mol (4484.5366 without restraints) Performing minimization step: 3759. Total energy = 4495.7402 kcal/mol (4483.0538 without restraints) Performing minimization step: 3760. Total energy = 4494.2548 kcal/mol (4481.5723 without restraints) Performing minimization step: 3761. Total energy = 4492.7709 kcal/mol (4480.0923 without restraints) Performing minimization step: 3762. Total energy = 4491.2887 kcal/mol (4478.6139 without restraints) Performing minimization step: 3763. Total energy = 4489.8076 kcal/mol (4477.1368 without restraints) Performing minimization step: 3764. Total energy = 4488.3292 kcal/mol (4475.6622 without restraints) Performing minimization step: 3765. Total energy = 4486.8516 kcal/mol (4474.1886 without restraints) Performing minimization step: 3766. Total energy = 4485.3757 kcal/mol (4472.7165 without restraints) Performing minimization step: 3767. Total energy = 4483.9013 kcal/mol (4471.2461 without restraints) Performing minimization step: 3768. Total energy = 4482.4284 kcal/mol (4469.7770 without restraints) Performing minimization step: 3769. Total energy = 4480.9566 kcal/mol (4468.3092 without restraints) Performing minimization step: 3770. Total energy = 4479.4866 kcal/mol (4466.8429 without restraints) Performing minimization step: 3771. Total energy = 4478.0176 kcal/mol (4465.3778 without restraints) Performing minimization step: 3772. Total energy = 4476.5501 kcal/mol (4463.9142 without restraints) Performing minimization step: 3773. Total energy = 4475.0841 kcal/mol (4462.4521 without restraints) Performing minimization step: 3774. Total energy = 4473.6201 kcal/mol (4460.9919 without restraints) Performing minimization step: 3775. Total energy = 4472.1572 kcal/mol (4459.5329 without restraints) Performing minimization step: 3776. Total energy = 4470.6959 kcal/mol (4458.0755 without restraints) Performing minimization step: 3777. Total energy = 4469.2359 kcal/mol (4456.6193 without restraints) Performing minimization step: 3778. Total energy = 4467.7774 kcal/mol (4455.1647 without restraints) Performing minimization step: 3779. Total energy = 4466.3202 kcal/mol (4453.7114 without restraints) Performing minimization step: 3780. Total energy = 4464.8652 kcal/mol (4452.2602 without restraints) Performing minimization step: 3781. Total energy = 4463.4112 kcal/mol (4450.8102 without restraints) Performing minimization step: 3782. Total energy = 4461.9587 kcal/mol (4449.3615 without restraints) Performing minimization step: 3783. Total energy = 4460.5076 kcal/mol (4447.9143 without restraints) Performing minimization step: 3784. Total energy = 4459.0582 kcal/mol (4446.4687 without restraints) Performing minimization step: 3785. Total energy = 4457.6100 kcal/mol (4445.0244 without restraints) Performing minimization step: 3786. Total energy = 4456.1629 kcal/mol (4443.5811 without restraints) Performing minimization step: 3787. Total energy = 4454.7174 kcal/mol (4442.1395 without restraints) Performing minimization step: 3788. Total energy = 4453.2738 kcal/mol (4440.6998 without restraints) Performing minimization step: 3789. Total energy = 4451.8318 kcal/mol (4439.2616 without restraints) Performing minimization step: 3790. Total energy = 4450.3910 kcal/mol (4437.8247 without restraints) Performing minimization step: 3791. Total energy = 4448.9519 kcal/mol (4436.3895 without restraints) Performing minimization step: 3792. Total energy = 4447.5145 kcal/mol (4434.9559 without restraints) Performing minimization step: 3793. Total energy = 4446.0784 kcal/mol (4433.5237 without restraints) Performing minimization step: 3794. Total energy = 4444.6436 kcal/mol (4432.0928 without restraints) Performing minimization step: 3795. Total energy = 4443.2102 kcal/mol (4430.6631 without restraints) Performing minimization step: 3796. Total energy = 4441.7782 kcal/mol (4429.2351 without restraints) Performing minimization step: 3797. Total energy = 4440.3480 kcal/mol (4427.8087 without restraints) Performing minimization step: 3798. Total energy = 4438.9189 kcal/mol (4426.3834 without restraints) Performing minimization step: 3799. Total energy = 4437.4913 kcal/mol (4424.9598 without restraints) Performing minimization step: 3800. Total energy = 4436.0652 kcal/mol (4423.5374 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 4434.6403 kcal/mol (4422.1163 without restraints) Performing minimization step: 3802. Total energy = 4433.2173 kcal/mol (4420.6974 without restraints) Performing minimization step: 3803. Total energy = 4431.7958 kcal/mol (4419.2797 without restraints) Performing minimization step: 3804. Total energy = 4430.3764 kcal/mol (4417.8640 without restraints) Performing minimization step: 3805. Total energy = 4428.9575 kcal/mol (4416.4488 without restraints) Performing minimization step: 3806. Total energy = 4427.5399 kcal/mol (4415.0352 without restraints) Performing minimization step: 3807. Total energy = 4426.1240 kcal/mol (4413.6232 without restraints) Performing minimization step: 3808. Total energy = 4424.7098 kcal/mol (4412.2128 without restraints) Performing minimization step: 3809. Total energy = 4423.2975 kcal/mol (4410.8043 without restraints) Performing minimization step: 3810. Total energy = 4421.8862 kcal/mol (4409.3968 without restraints) Performing minimization step: 3811. Total energy = 4420.4760 kcal/mol (4407.9905 without restraints) Performing minimization step: 3812. Total energy = 4419.0671 kcal/mol (4406.5854 without restraints) Performing minimization step: 3813. Total energy = 4417.6597 kcal/mol (4405.1819 without restraints) Performing minimization step: 3814. Total energy = 4416.2541 kcal/mol (4403.7801 without restraints) Performing minimization step: 3815. Total energy = 4414.8496 kcal/mol (4402.3794 without restraints) Performing minimization step: 3816. Total energy = 4413.4466 kcal/mol (4400.9800 without restraints) Performing minimization step: 3817. Total energy = 4412.0449 kcal/mol (4399.5823 without restraints) Performing minimization step: 3818. Total energy = 4410.6447 kcal/mol (4398.1861 without restraints) Performing minimization step: 3819. Total energy = 4409.2464 kcal/mol (4396.7917 without restraints) Performing minimization step: 3820. Total energy = 4407.8489 kcal/mol (4395.3978 without restraints) Performing minimization step: 3821. Total energy = 4406.4526 kcal/mol (4394.0053 without restraints) Performing minimization step: 3822. Total energy = 4405.0588 kcal/mol (4392.6152 without restraints) Performing minimization step: 3823. Total energy = 4403.6655 kcal/mol (4391.2260 without restraints) Performing minimization step: 3824. Total energy = 4402.2741 kcal/mol (4389.8384 without restraints) Performing minimization step: 3825. Total energy = 4400.8845 kcal/mol (4388.4526 without restraints) Performing minimization step: 3826. Total energy = 4399.4960 kcal/mol (4387.0677 without restraints) Performing minimization step: 3827. Total energy = 4398.1091 kcal/mol (4385.6850 without restraints) Performing minimization step: 3828. Total energy = 4396.7237 kcal/mol (4384.3033 without restraints) Performing minimization step: 3829. Total energy = 4395.3401 kcal/mol (4382.9235 without restraints) Performing minimization step: 3830. Total energy = 4393.9575 kcal/mol (4381.5447 without restraints) Performing minimization step: 3831. Total energy = 4392.5762 kcal/mol (4380.1672 without restraints) Performing minimization step: 3832. Total energy = 4391.1963 kcal/mol (4378.7911 without restraints) Performing minimization step: 3833. Total energy = 4389.8175 kcal/mol (4377.4161 without restraints) Performing minimization step: 3834. Total energy = 4388.4411 kcal/mol (4376.0437 without restraints) Performing minimization step: 3835. Total energy = 4387.0651 kcal/mol (4374.6713 without restraints) Performing minimization step: 3836. Total energy = 4385.6908 kcal/mol (4373.3007 without restraints) Performing minimization step: 3837. Total energy = 4384.3175 kcal/mol (4371.9312 without restraints) Performing minimization step: 3838. Total energy = 4382.9461 kcal/mol (4370.5637 without restraints) Performing minimization step: 3839. Total energy = 4381.5757 kcal/mol (4369.1971 without restraints) Performing minimization step: 3840. Total energy = 4380.2067 kcal/mol (4367.8319 without restraints) Performing minimization step: 3841. Total energy = 4378.8397 kcal/mol (4366.4687 without restraints) Performing minimization step: 3842. Total energy = 4377.4741 kcal/mol (4365.1070 without restraints) Performing minimization step: 3843. Total energy = 4376.1101 kcal/mol (4363.7467 without restraints) Performing minimization step: 3844. Total energy = 4374.7473 kcal/mol (4362.3877 without restraints) Performing minimization step: 3845. Total energy = 4373.3855 kcal/mol (4361.0297 without restraints) Performing minimization step: 3846. Total energy = 4372.0249 kcal/mol (4359.6730 without restraints) Performing minimization step: 3847. Total energy = 4370.6661 kcal/mol (4358.3179 without restraints) Performing minimization step: 3848. Total energy = 4369.3088 kcal/mol (4356.9643 without restraints) Performing minimization step: 3849. Total energy = 4367.9523 kcal/mol (4355.6117 without restraints) Performing minimization step: 3850. Total energy = 4366.5976 kcal/mol (4354.2609 without restraints) Performing minimization step: 3851. Total energy = 4365.2441 kcal/mol (4352.9111 without restraints) Performing minimization step: 3852. Total energy = 4363.8924 kcal/mol (4351.5631 without restraints) Performing minimization step: 3853. Total energy = 4362.5419 kcal/mol (4350.2165 without restraints) Performing minimization step: 3854. Total energy = 4361.1935 kcal/mol (4348.8719 without restraints) Performing minimization step: 3855. Total energy = 4359.8453 kcal/mol (4347.5274 without restraints) Performing minimization step: 3856. Total energy = 4358.4993 kcal/mol (4346.1852 without restraints) Performing minimization step: 3857. Total energy = 4357.1544 kcal/mol (4344.8441 without restraints) Performing minimization step: 3858. Total energy = 4355.8107 kcal/mol (4343.5042 without restraints) Performing minimization step: 3859. Total energy = 4354.4687 kcal/mol (4342.1659 without restraints) Performing minimization step: 3860. Total energy = 4353.1278 kcal/mol (4340.8288 without restraints) Performing minimization step: 3861. Total energy = 4351.7887 kcal/mol (4339.4940 without restraints) Performing minimization step: 3862. Total energy = 4350.4508 kcal/mol (4338.1595 without restraints) Performing minimization step: 3863. Total energy = 4349.1139 kcal/mol (4336.8262 without restraints) Performing minimization step: 3864. Total energy = 4347.7785 kcal/mol (4335.4947 without restraints) Performing minimization step: 3865. Total energy = 4346.4450 kcal/mol (4334.1650 without restraints) Performing minimization step: 3866. Total energy = 4345.1131 kcal/mol (4332.8369 without restraints) Performing minimization step: 3867. Total energy = 4343.7817 kcal/mol (4331.5092 without restraints) Performing minimization step: 3868. Total energy = 4342.4522 kcal/mol (4330.1835 without restraints) Performing minimization step: 3869. Total energy = 4341.1238 kcal/mol (4328.8588 without restraints) Performing minimization step: 3870. Total energy = 4339.7973 kcal/mol (4327.5361 without restraints) Performing minimization step: 3871. Total energy = 4338.4715 kcal/mol (4326.2140 without restraints) Performing minimization step: 3872. Total energy = 4337.1470 kcal/mol (4324.8933 without restraints) Performing minimization step: 3873. Total energy = 4335.8241 kcal/mol (4323.5742 without restraints) Performing minimization step: 3874. Total energy = 4334.5029 kcal/mol (4322.2568 without restraints) Performing minimization step: 3875. Total energy = 4333.1828 kcal/mol (4320.9404 without restraints) Performing minimization step: 3876. Total energy = 4331.8641 kcal/mol (4319.6255 without restraints) Performing minimization step: 3877. Total energy = 4330.5464 kcal/mol (4318.3117 without restraints) Performing minimization step: 3878. Total energy = 4329.2306 kcal/mol (4316.9997 without restraints) Performing minimization step: 3879. Total energy = 4327.9163 kcal/mol (4315.6890 without restraints) Performing minimization step: 3880. Total energy = 4326.6036 kcal/mol (4314.3800 without restraints) Performing minimization step: 3881. Total energy = 4325.2917 kcal/mol (4313.0718 without restraints) Performing minimization step: 3882. Total energy = 4323.9813 kcal/mol (4311.7653 without restraints) Performing minimization step: 3883. Total energy = 4322.6726 kcal/mol (4310.4603 without restraints) Performing minimization step: 3884. Total energy = 4321.3646 kcal/mol (4309.1559 without restraints) Performing minimization step: 3885. Total energy = 4320.0592 kcal/mol (4307.8544 without restraints) Performing minimization step: 3886. Total energy = 4318.7543 kcal/mol (4306.5532 without restraints) Performing minimization step: 3887. Total energy = 4317.4505 kcal/mol (4305.2532 without restraints) Performing minimization step: 3888. Total energy = 4316.1485 kcal/mol (4303.9549 without restraints) Performing minimization step: 3889. Total energy = 4314.8479 kcal/mol (4302.6581 without restraints) Performing minimization step: 3890. Total energy = 4313.5479 kcal/mol (4301.3619 without restraints) Performing minimization step: 3891. Total energy = 4312.2497 kcal/mol (4300.0674 without restraints) Performing minimization step: 3892. Total energy = 4310.9524 kcal/mol (4298.7738 without restraints) Performing minimization step: 3893. Total energy = 4309.6568 kcal/mol (4297.4819 without restraints) Performing minimization step: 3894. Total energy = 4308.3627 kcal/mol (4296.1916 without restraints) Performing minimization step: 3895. Total energy = 4307.0698 kcal/mol (4294.9023 without restraints) Performing minimization step: 3896. Total energy = 4305.7782 kcal/mol (4293.6145 without restraints) Performing minimization step: 3897. Total energy = 4304.4881 kcal/mol (4292.3282 without restraints) Performing minimization step: 3898. Total energy = 4303.1995 kcal/mol (4291.0434 without restraints) Performing minimization step: 3899. Total energy = 4301.9125 kcal/mol (4289.7601 without restraints) Performing minimization step: 3900. Total energy = 4300.6266 kcal/mol (4288.4782 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 4299.3421 kcal/mol (4287.1973 without restraints) Performing minimization step: 3902. Total energy = 4298.0590 kcal/mol (4285.9178 without restraints) Performing minimization step: 3903. Total energy = 4296.7769 kcal/mol (4284.6394 without restraints) Performing minimization step: 3904. Total energy = 4295.4964 kcal/mol (4283.3628 without restraints) Performing minimization step: 3905. Total energy = 4294.2172 kcal/mol (4282.0871 without restraints) Performing minimization step: 3906. Total energy = 4292.9391 kcal/mol (4280.8129 without restraints) Performing minimization step: 3907. Total energy = 4291.6624 kcal/mol (4279.5399 without restraints) Performing minimization step: 3908. Total energy = 4290.3869 kcal/mol (4278.2681 without restraints) Performing minimization step: 3909. Total energy = 4289.1132 kcal/mol (4276.9981 without restraints) Performing minimization step: 3910. Total energy = 4287.8411 kcal/mol (4275.7298 without restraints) Performing minimization step: 3911. Total energy = 4286.5696 kcal/mol (4274.4619 without restraints) Performing minimization step: 3912. Total energy = 4285.2999 kcal/mol (4273.1959 without restraints) Performing minimization step: 3913. Total energy = 4284.0313 kcal/mol (4271.9309 without restraints) Performing minimization step: 3914. Total energy = 4282.7640 kcal/mol (4270.6678 without restraints) Performing minimization step: 3915. Total energy = 4281.4982 kcal/mol (4269.4054 without restraints) Performing minimization step: 3916. Total energy = 4280.2338 kcal/mol (4268.1448 without restraints) Performing minimization step: 3917. Total energy = 4278.9704 kcal/mol (4266.8851 without restraints) Performing minimization step: 3918. Total energy = 4277.7083 kcal/mol (4265.6267 without restraints) Performing minimization step: 3919. Total energy = 4276.4474 kcal/mol (4264.3695 without restraints) Performing minimization step: 3920. Total energy = 4275.1879 kcal/mol (4263.1138 without restraints) Performing minimization step: 3921. Total energy = 4273.9301 kcal/mol (4261.8597 without restraints) Performing minimization step: 3922. Total energy = 4272.6737 kcal/mol (4260.6071 without restraints) Performing minimization step: 3923. Total energy = 4271.4183 kcal/mol (4259.3552 without restraints) Performing minimization step: 3924. Total energy = 4270.1637 kcal/mol (4258.1043 without restraints) Performing minimization step: 3925. Total energy = 4268.9110 kcal/mol (4256.8553 without restraints) Performing minimization step: 3926. Total energy = 4267.6592 kcal/mol (4255.6073 without restraints) Performing minimization step: 3927. Total energy = 4266.4094 kcal/mol (4254.3612 without restraints) Performing minimization step: 3928. Total energy = 4265.1605 kcal/mol (4253.1160 without restraints) Performing minimization step: 3929. Total energy = 4263.9129 kcal/mol (4251.8719 without restraints) Performing minimization step: 3930. Total energy = 4262.6665 kcal/mol (4250.6293 without restraints) Performing minimization step: 3931. Total energy = 4261.4214 kcal/mol (4249.3879 without restraints) Performing minimization step: 3932. Total energy = 4260.1776 kcal/mol (4248.1479 without restraints) Performing minimization step: 3933. Total energy = 4258.9355 kcal/mol (4246.9094 without restraints) Performing minimization step: 3934. Total energy = 4257.6941 kcal/mol (4245.6718 without restraints) Performing minimization step: 3935. Total energy = 4256.4543 kcal/mol (4244.4357 without restraints) Performing minimization step: 3936. Total energy = 4255.2160 kcal/mol (4243.2010 without restraints) Performing minimization step: 3937. Total energy = 4253.9786 kcal/mol (4241.9673 without restraints) Performing minimization step: 3938. Total energy = 4252.7425 kcal/mol (4240.7349 without restraints) Performing minimization step: 3939. Total energy = 4251.5079 kcal/mol (4239.5041 without restraints) Performing minimization step: 3940. Total energy = 4250.2747 kcal/mol (4238.2745 without restraints) Performing minimization step: 3941. Total energy = 4249.0429 kcal/mol (4237.0464 without restraints) Performing minimization step: 3942. Total energy = 4247.8122 kcal/mol (4235.8194 without restraints) Performing minimization step: 3943. Total energy = 4246.5830 kcal/mol (4234.5939 without restraints) Performing minimization step: 3944. Total energy = 4245.3552 kcal/mol (4233.3698 without restraints) Performing minimization step: 3945. Total energy = 4244.1286 kcal/mol (4232.1469 without restraints) Performing minimization step: 3946. Total energy = 4242.9032 kcal/mol (4230.9252 without restraints) Performing minimization step: 3947. Total energy = 4241.6790 kcal/mol (4229.7047 without restraints) Performing minimization step: 3948. Total energy = 4240.4562 kcal/mol (4228.4857 without restraints) Performing minimization step: 3949. Total energy = 4239.2348 kcal/mol (4227.2678 without restraints) Performing minimization step: 3950. Total energy = 4238.0149 kcal/mol (4226.0516 without restraints) Performing minimization step: 3951. Total energy = 4236.7960 kcal/mol (4224.8366 without restraints) Performing minimization step: 3952. Total energy = 4235.5788 kcal/mol (4223.6228 without restraints) Performing minimization step: 3953. Total energy = 4234.3626 kcal/mol (4222.4104 without restraints) Performing minimization step: 3954. Total energy = 4233.1478 kcal/mol (4221.1992 without restraints) Performing minimization step: 3955. Total energy = 4231.9345 kcal/mol (4219.9896 without restraints) Performing minimization step: 3956. Total energy = 4230.7222 kcal/mol (4218.7809 without restraints) Performing minimization step: 3957. Total energy = 4229.5109 kcal/mol (4217.5733 without restraints) Performing minimization step: 3958. Total energy = 4228.3008 kcal/mol (4216.3669 without restraints) Performing minimization step: 3959. Total energy = 4227.0922 kcal/mol (4215.1621 without restraints) Performing minimization step: 3960. Total energy = 4225.8852 kcal/mol (4213.9586 without restraints) Performing minimization step: 3961. Total energy = 4224.6791 kcal/mol (4212.7561 without restraints) Performing minimization step: 3962. Total energy = 4223.4742 kcal/mol (4211.5550 without restraints) Performing minimization step: 3963. Total energy = 4222.2708 kcal/mol (4210.3552 without restraints) Performing minimization step: 3964. Total energy = 4221.0685 kcal/mol (4209.1565 without restraints) Performing minimization step: 3965. Total energy = 4219.8673 kcal/mol (4207.9591 without restraints) Performing minimization step: 3966. Total energy = 4218.6675 kcal/mol (4206.7629 without restraints) Performing minimization step: 3967. Total energy = 4217.4694 kcal/mol (4205.5685 without restraints) Performing minimization step: 3968. Total energy = 4216.2721 kcal/mol (4204.3748 without restraints) Performing minimization step: 3969. Total energy = 4215.0768 kcal/mol (4203.1832 without restraints) Performing minimization step: 3970. Total energy = 4213.8822 kcal/mol (4201.9923 without restraints) Performing minimization step: 3971. Total energy = 4212.6887 kcal/mol (4200.8025 without restraints) Performing minimization step: 3972. Total energy = 4211.4968 kcal/mol (4199.6142 without restraints) Performing minimization step: 3973. Total energy = 4210.3059 kcal/mol (4198.4268 without restraints) Performing minimization step: 3974. Total energy = 4209.1164 kcal/mol (4197.2410 without restraints) Performing minimization step: 3975. Total energy = 4207.9283 kcal/mol (4196.0566 without restraints) Performing minimization step: 3976. Total energy = 4206.7420 kcal/mol (4194.8740 without restraints) Performing minimization step: 3977. Total energy = 4205.5565 kcal/mol (4193.6921 without restraints) Performing minimization step: 3978. Total energy = 4204.3721 kcal/mol (4192.5113 without restraints) Performing minimization step: 3979. Total energy = 4203.1886 kcal/mol (4191.3315 without restraints) Performing minimization step: 3980. Total energy = 4202.0068 kcal/mol (4190.1534 without restraints) Performing minimization step: 3981. Total energy = 4200.8262 kcal/mol (4188.9763 without restraints) Performing minimization step: 3982. Total energy = 4199.6465 kcal/mol (4187.8003 without restraints) Performing minimization step: 3983. Total energy = 4198.4683 kcal/mol (4186.6258 without restraints) Performing minimization step: 3984. Total energy = 4197.2913 kcal/mol (4185.4524 without restraints) Performing minimization step: 3985. Total energy = 4196.1153 kcal/mol (4184.2801 without restraints) Performing minimization step: 3986. Total energy = 4194.9409 kcal/mol (4183.1092 without restraints) Performing minimization step: 3987. Total energy = 4193.7681 kcal/mol (4181.9401 without restraints) Performing minimization step: 3988. Total energy = 4192.5961 kcal/mol (4180.7718 without restraints) Performing minimization step: 3989. Total energy = 4191.4255 kcal/mol (4179.6049 without restraints) Performing minimization step: 3990. Total energy = 4190.2560 kcal/mol (4178.4389 without restraints) Performing minimization step: 3991. Total energy = 4189.0872 kcal/mol (4177.2738 without restraints) Performing minimization step: 3992. Total energy = 4187.9202 kcal/mol (4176.1105 without restraints) Performing minimization step: 3993. Total energy = 4186.7549 kcal/mol (4174.9486 without restraints) Performing minimization step: 3994. Total energy = 4185.5902 kcal/mol (4173.7877 without restraints) Performing minimization step: 3995. Total energy = 4184.4264 kcal/mol (4172.6274 without restraints) Performing minimization step: 3996. Total energy = 4183.2643 kcal/mol (4171.4690 without restraints) Performing minimization step: 3997. Total energy = 4182.1033 kcal/mol (4170.3116 without restraints) Performing minimization step: 3998. Total energy = 4180.9435 kcal/mol (4169.1555 without restraints) Performing minimization step: 3999. Total energy = 4179.7848 kcal/mol (4168.0003 without restraints) Performing minimization step: 4000. Total energy = 4178.6279 kcal/mol (4166.8471 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 4177.4722 kcal/mol (4165.6950 without restraints) Performing minimization step: 4002. Total energy = 4176.3177 kcal/mol (4164.5443 without restraints) Performing minimization step: 4003. Total energy = 4175.1643 kcal/mol (4163.3943 without restraints) Performing minimization step: 4004. Total energy = 4174.0121 kcal/mol (4162.2459 without restraints) Performing minimization step: 4005. Total energy = 4172.8611 kcal/mol (4161.0984 without restraints) Performing minimization step: 4006. Total energy = 4171.7112 kcal/mol (4159.9520 without restraints) Performing minimization step: 4007. Total energy = 4170.5624 kcal/mol (4158.8069 without restraints) Performing minimization step: 4008. Total energy = 4169.4149 kcal/mol (4157.6630 without restraints) Performing minimization step: 4009. Total energy = 4168.2690 kcal/mol (4156.5208 without restraints) Performing minimization step: 4010. Total energy = 4167.1243 kcal/mol (4155.3797 without restraints) Performing minimization step: 4011. Total energy = 4165.9805 kcal/mol (4154.2395 without restraints) Performing minimization step: 4012. Total energy = 4164.8381 kcal/mol (4153.1006 without restraints) Performing minimization step: 4013. Total energy = 4163.6967 kcal/mol (4151.9629 without restraints) Performing minimization step: 4014. Total energy = 4162.5570 kcal/mol (4150.8267 without restraints) Performing minimization step: 4015. Total energy = 4161.4178 kcal/mol (4149.6912 without restraints) Performing minimization step: 4016. Total energy = 4160.2801 kcal/mol (4148.5571 without restraints) Performing minimization step: 4017. Total energy = 4159.1436 kcal/mol (4147.4242 without restraints) Performing minimization step: 4018. Total energy = 4158.0085 kcal/mol (4146.2925 without restraints) Performing minimization step: 4019. Total energy = 4156.8744 kcal/mol (4145.1623 without restraints) Performing minimization step: 4020. Total energy = 4155.7420 kcal/mol (4144.0335 without restraints) Performing minimization step: 4021. Total energy = 4154.6104 kcal/mol (4142.9054 without restraints) Performing minimization step: 4022. Total energy = 4153.4802 kcal/mol (4141.7788 without restraints) Performing minimization step: 4023. Total energy = 4152.3514 kcal/mol (4140.6536 without restraints) Performing minimization step: 4024. Total energy = 4151.2234 kcal/mol (4139.5292 without restraints) Performing minimization step: 4025. Total energy = 4150.0967 kcal/mol (4138.4061 without restraints) Performing minimization step: 4026. Total energy = 4148.9710 kcal/mol (4137.2840 without restraints) Performing minimization step: 4027. Total energy = 4147.8471 kcal/mol (4136.1638 without restraints) Performing minimization step: 4028. Total energy = 4146.7240 kcal/mol (4135.0442 without restraints) Performing minimization step: 4029. Total energy = 4145.6020 kcal/mol (4133.9258 without restraints) Performing minimization step: 4030. Total energy = 4144.4812 kcal/mol (4132.8086 without restraints) Performing minimization step: 4031. Total energy = 4143.3616 kcal/mol (4131.6926 without restraints) Performing minimization step: 4032. Total energy = 4142.2436 kcal/mol (4130.5782 without restraints) Performing minimization step: 4033. Total energy = 4141.1265 kcal/mol (4129.4646 without restraints) Performing minimization step: 4034. Total energy = 4140.0102 kcal/mol (4128.3519 without restraints) Performing minimization step: 4035. Total energy = 4138.8953 kcal/mol (4127.2406 without restraints) Performing minimization step: 4036. Total energy = 4137.7817 kcal/mol (4126.1307 without restraints) Performing minimization step: 4037. Total energy = 4136.6697 kcal/mol (4125.0221 without restraints) Performing minimization step: 4038. Total energy = 4135.5584 kcal/mol (4123.9144 without restraints) Performing minimization step: 4039. Total energy = 4134.4483 kcal/mol (4122.8079 without restraints) Performing minimization step: 4040. Total energy = 4133.3399 kcal/mol (4121.7030 without restraints) Performing minimization step: 4041. Total energy = 4132.2322 kcal/mol (4120.5989 without restraints) Performing minimization step: 4042. Total energy = 4131.1255 kcal/mol (4119.4958 without restraints) Performing minimization step: 4043. Total energy = 4130.0202 kcal/mol (4118.3942 without restraints) Performing minimization step: 4044. Total energy = 4128.9162 kcal/mol (4117.2937 without restraints) Performing minimization step: 4045. Total energy = 4127.8137 kcal/mol (4116.1947 without restraints) Performing minimization step: 4046. Total energy = 4126.7124 kcal/mol (4115.0971 without restraints) Performing minimization step: 4047. Total energy = 4125.6119 kcal/mol (4114.0001 without restraints) Performing minimization step: 4048. Total energy = 4124.5127 kcal/mol (4112.9046 without restraints) Performing minimization step: 4049. Total energy = 4123.4149 kcal/mol (4111.8102 without restraints) Performing minimization step: 4050. Total energy = 4122.3179 kcal/mol (4110.7169 without restraints) Performing minimization step: 4051. Total energy = 4121.2224 kcal/mol (4109.6248 without restraints) Performing minimization step: 4052. Total energy = 4120.1277 kcal/mol (4108.5337 without restraints) Performing minimization step: 4053. Total energy = 4119.0343 kcal/mol (4107.4439 without restraints) Performing minimization step: 4054. Total energy = 4117.9421 kcal/mol (4106.3552 without restraints) Performing minimization step: 4055. Total energy = 4116.8508 kcal/mol (4105.2676 without restraints) Performing minimization step: 4056. Total energy = 4115.7609 kcal/mol (4104.1812 without restraints) Performing minimization step: 4057. Total energy = 4114.6718 kcal/mol (4103.0956 without restraints) Performing minimization step: 4058. Total energy = 4113.5845 kcal/mol (4102.0120 without restraints) Performing minimization step: 4059. Total energy = 4112.4981 kcal/mol (4100.9290 without restraints) Performing minimization step: 4060. Total energy = 4111.4129 kcal/mol (4099.8475 without restraints) Performing minimization step: 4061. Total energy = 4110.3292 kcal/mol (4098.7672 without restraints) Performing minimization step: 4062. Total energy = 4109.2462 kcal/mol (4097.6877 without restraints) Performing minimization step: 4063. Total energy = 4108.1643 kcal/mol (4096.6094 without restraints) Performing minimization step: 4064. Total energy = 4107.0835 kcal/mol (4095.5322 without restraints) Performing minimization step: 4065. Total energy = 4106.0041 kcal/mol (4094.4564 without restraints) Performing minimization step: 4066. Total energy = 4104.9259 kcal/mol (4093.3816 without restraints) Performing minimization step: 4067. Total energy = 4103.8495 kcal/mol (4092.3087 without restraints) Performing minimization step: 4068. Total energy = 4102.7734 kcal/mol (4091.2363 without restraints) Performing minimization step: 4069. Total energy = 4101.6985 kcal/mol (4090.1649 without restraints) Performing minimization step: 4070. Total energy = 4100.6250 kcal/mol (4089.0949 without restraints) Performing minimization step: 4071. Total energy = 4099.5524 kcal/mol (4088.0258 without restraints) Performing minimization step: 4072. Total energy = 4098.4814 kcal/mol (4086.9583 without restraints) Performing minimization step: 4073. Total energy = 4097.4110 kcal/mol (4085.8915 without restraints) Performing minimization step: 4074. Total energy = 4096.3421 kcal/mol (4084.8261 without restraints) Performing minimization step: 4075. Total energy = 4095.2744 kcal/mol (4083.7621 without restraints) Performing minimization step: 4076. Total energy = 4094.2076 kcal/mol (4082.6988 without restraints) Performing minimization step: 4077. Total energy = 4093.1419 kcal/mol (4081.6366 without restraints) Performing minimization step: 4078. Total energy = 4092.0773 kcal/mol (4080.5755 without restraints) Performing minimization step: 4079. Total energy = 4091.0141 kcal/mol (4079.5159 without restraints) Performing minimization step: 4080. Total energy = 4089.9520 kcal/mol (4078.4572 without restraints) Performing minimization step: 4081. Total energy = 4088.8907 kcal/mol (4077.3995 without restraints) Performing minimization step: 4082. Total energy = 4087.8309 kcal/mol (4076.3433 without restraints) Performing minimization step: 4083. Total energy = 4086.7723 kcal/mol (4075.2881 without restraints) Performing minimization step: 4084. Total energy = 4085.7144 kcal/mol (4074.2338 without restraints) Performing minimization step: 4085. Total energy = 4084.6581 kcal/mol (4073.1810 without restraints) Performing minimization step: 4086. Total energy = 4083.6036 kcal/mol (4072.1301 without restraints) Performing minimization step: 4087. Total energy = 4082.5496 kcal/mol (4071.0795 without restraints) Performing minimization step: 4088. Total energy = 4081.4962 kcal/mol (4070.0296 without restraints) Performing minimization step: 4089. Total energy = 4080.4440 kcal/mol (4068.9810 without restraints) Performing minimization step: 4090. Total energy = 4079.3929 kcal/mol (4067.9334 without restraints) Performing minimization step: 4091. Total energy = 4078.3432 kcal/mol (4066.8872 without restraints) Performing minimization step: 4092. Total energy = 4077.2947 kcal/mol (4065.8424 without restraints) Performing minimization step: 4093. Total energy = 4076.2470 kcal/mol (4064.7982 without restraints) Performing minimization step: 4094. Total energy = 4075.2008 kcal/mol (4063.7553 without restraints) Performing minimization step: 4095. Total energy = 4074.1557 kcal/mol (4062.7137 without restraints) Performing minimization step: 4096. Total energy = 4073.1115 kcal/mol (4061.6731 without restraints) Performing minimization step: 4097. Total energy = 4072.0686 kcal/mol (4060.6337 without restraints) Performing minimization step: 4098. Total energy = 4071.0267 kcal/mol (4059.5952 without restraints) Performing minimization step: 4099. Total energy = 4069.9861 kcal/mol (4058.5581 without restraints) Performing minimization step: 4100. Total energy = 4068.9464 kcal/mol (4057.5220 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 4067.9082 kcal/mol (4056.4873 without restraints) Performing minimization step: 4102. Total energy = 4066.8710 kcal/mol (4055.4536 without restraints) Performing minimization step: 4103. Total energy = 4065.8349 kcal/mol (4054.4210 without restraints) Performing minimization step: 4104. Total energy = 4064.8000 kcal/mol (4053.3896 without restraints) Performing minimization step: 4105. Total energy = 4063.7668 kcal/mol (4052.3599 without restraints) Performing minimization step: 4106. Total energy = 4062.7338 kcal/mol (4051.3304 without restraints) Performing minimization step: 4107. Total energy = 4061.7018 kcal/mol (4050.3018 without restraints) Performing minimization step: 4108. Total energy = 4060.6710 kcal/mol (4049.2747 without restraints) Performing minimization step: 4109. Total energy = 4059.6417 kcal/mol (4048.2488 without restraints) Performing minimization step: 4110. Total energy = 4058.6131 kcal/mol (4047.2237 without restraints) Performing minimization step: 4111. Total energy = 4057.5857 kcal/mol (4046.1997 without restraints) Performing minimization step: 4112. Total energy = 4056.5597 kcal/mol (4045.1773 without restraints) Performing minimization step: 4113. Total energy = 4055.5345 kcal/mol (4044.1555 without restraints) Performing minimization step: 4114. Total energy = 4054.5102 kcal/mol (4043.1347 without restraints) Performing minimization step: 4115. Total energy = 4053.4872 kcal/mol (4042.1152 without restraints) Performing minimization step: 4116. Total energy = 4052.4653 kcal/mol (4041.0968 without restraints) Performing minimization step: 4117. Total energy = 4051.4449 kcal/mol (4040.0801 without restraints) Performing minimization step: 4118. Total energy = 4050.4254 kcal/mol (4039.0640 without restraints) Performing minimization step: 4119. Total energy = 4049.4072 kcal/mol (4038.0492 without restraints) Performing minimization step: 4120. Total energy = 4048.3894 kcal/mol (4037.0349 without restraints) Performing minimization step: 4121. Total energy = 4047.3730 kcal/mol (4036.0219 without restraints) Performing minimization step: 4122. Total energy = 4046.3579 kcal/mol (4035.0104 without restraints) Performing minimization step: 4123. Total energy = 4045.3434 kcal/mol (4033.9992 without restraints) Performing minimization step: 4124. Total energy = 4044.3299 kcal/mol (4032.9893 without restraints) Performing minimization step: 4125. Total energy = 4043.3179 kcal/mol (4031.9807 without restraints) Performing minimization step: 4126. Total energy = 4042.3071 kcal/mol (4030.9734 without restraints) Performing minimization step: 4127. Total energy = 4041.2972 kcal/mol (4029.9670 without restraints) Performing minimization step: 4128. Total energy = 4040.2883 kcal/mol (4028.9615 without restraints) Performing minimization step: 4129. Total energy = 4039.2805 kcal/mol (4027.9572 without restraints) Performing minimization step: 4130. Total energy = 4038.2739 kcal/mol (4026.9541 without restraints) Performing minimization step: 4131. Total energy = 4037.2686 kcal/mol (4025.9523 without restraints) Performing minimization step: 4132. Total energy = 4036.2647 kcal/mol (4024.9518 without restraints) Performing minimization step: 4133. Total energy = 4035.2613 kcal/mol (4023.9519 without restraints) Performing minimization step: 4134. Total energy = 4034.2592 kcal/mol (4022.9532 without restraints) Performing minimization step: 4135. Total energy = 4033.2583 kcal/mol (4021.9560 without restraints) Performing minimization step: 4136. Total energy = 4032.2583 kcal/mol (4020.9593 without restraints) Performing minimization step: 4137. Total energy = 4031.2594 kcal/mol (4019.9639 without restraints) Performing minimization step: 4138. Total energy = 4030.2614 kcal/mol (4018.9693 without restraints) Performing minimization step: 4139. Total energy = 4029.2646 kcal/mol (4017.9762 without restraints) Performing minimization step: 4140. Total energy = 4028.2690 kcal/mol (4016.9836 without restraints) Performing minimization step: 4141. Total energy = 4027.2740 kcal/mol (4015.9923 without restraints) Performing minimization step: 4142. Total energy = 4026.2803 kcal/mol (4015.0021 without restraints) Performing minimization step: 4143. Total energy = 4025.2880 kcal/mol (4014.0133 without restraints) Performing minimization step: 4144. Total energy = 4024.2965 kcal/mol (4013.0252 without restraints) Performing minimization step: 4145. Total energy = 4023.3064 kcal/mol (4012.0385 without restraints) Performing minimization step: 4146. Total energy = 4022.3176 kcal/mol (4011.0531 without restraints) Performing minimization step: 4147. Total energy = 4021.3292 kcal/mol (4010.0683 without restraints) Performing minimization step: 4148. Total energy = 4020.3423 kcal/mol (4009.0848 without restraints) Performing minimization step: 4149. Total energy = 4019.3561 kcal/mol (4008.1020 without restraints) Performing minimization step: 4150. Total energy = 4018.3708 kcal/mol (4007.1201 without restraints) Performing minimization step: 4151. Total energy = 4017.3869 kcal/mol (4006.1397 without restraints) Performing minimization step: 4152. Total energy = 4016.4034 kcal/mol (4005.1596 without restraints) Performing minimization step: 4153. Total energy = 4015.4216 kcal/mol (4004.1813 without restraints) Performing minimization step: 4154. Total energy = 4014.4410 kcal/mol (4003.2041 without restraints) Performing minimization step: 4155. Total energy = 4013.4616 kcal/mol (4002.2281 without restraints) Performing minimization step: 4156. Total energy = 4012.4827 kcal/mol (4001.2527 without restraints) Performing minimization step: 4157. Total energy = 4011.5047 kcal/mol (4000.2781 without restraints) Performing minimization step: 4158. Total energy = 4010.5283 kcal/mol (3999.3052 without restraints) Performing minimization step: 4159. Total energy = 4009.5524 kcal/mol (3998.3327 without restraints) Performing minimization step: 4160. Total energy = 4008.5777 kcal/mol (3997.3615 without restraints) Performing minimization step: 4161. Total energy = 4007.6044 kcal/mol (3996.3916 without restraints) Performing minimization step: 4162. Total energy = 4006.6319 kcal/mol (3995.4225 without restraints) Performing minimization step: 4163. Total energy = 4005.6604 kcal/mol (3994.4544 without restraints) Performing minimization step: 4164. Total energy = 4004.6900 kcal/mol (3993.4875 without restraints) Performing minimization step: 4165. Total energy = 4003.7207 kcal/mol (3992.5216 without restraints) Performing minimization step: 4166. Total energy = 4002.7524 kcal/mol (3991.5568 without restraints) Performing minimization step: 4167. Total energy = 4001.7847 kcal/mol (3990.5924 without restraints) Performing minimization step: 4168. Total energy = 4000.8184 kcal/mol (3989.6295 without restraints) Performing minimization step: 4169. Total energy = 3999.8535 kcal/mol (3988.6680 without restraints) Performing minimization step: 4170. Total energy = 3998.8892 kcal/mol (3987.7071 without restraints) Performing minimization step: 4171. Total energy = 3997.9262 kcal/mol (3986.7476 without restraints) Performing minimization step: 4172. Total energy = 3996.9645 kcal/mol (3985.7893 without restraints) Performing minimization step: 4173. Total energy = 3996.0031 kcal/mol (3984.8313 without restraints) Performing minimization step: 4174. Total energy = 3995.0438 kcal/mol (3983.8756 without restraints) Performing minimization step: 4175. Total energy = 3994.0852 kcal/mol (3982.9203 without restraints) Performing minimization step: 4176. Total energy = 3993.1274 kcal/mol (3981.9660 without restraints) Performing minimization step: 4177. Total energy = 3992.1710 kcal/mol (3981.0129 without restraints) Performing minimization step: 4178. Total energy = 3991.2148 kcal/mol (3980.0602 without restraints) Performing minimization step: 4179. Total energy = 3990.2601 kcal/mol (3979.1088 without restraints) Performing minimization step: 4180. Total energy = 3989.3063 kcal/mol (3978.1584 without restraints) Performing minimization step: 4181. Total energy = 3988.3538 kcal/mol (3977.2097 without restraints) Performing minimization step: 4182. Total energy = 3987.4023 kcal/mol (3976.2613 without restraints) Performing minimization step: 4183. Total energy = 3986.4517 kcal/mol (3975.3140 without restraints) Performing minimization step: 4184. Total energy = 3985.5020 kcal/mol (3974.3677 without restraints) Performing minimization step: 4185. Total energy = 3984.5535 kcal/mol (3973.4227 without restraints) Performing minimization step: 4186. Total energy = 3983.6058 kcal/mol (3972.4784 without restraints) Performing minimization step: 4187. Total energy = 3982.6597 kcal/mol (3971.5357 without restraints) Performing minimization step: 4188. Total energy = 3981.7141 kcal/mol (3970.5934 without restraints) Performing minimization step: 4189. Total energy = 3980.7693 kcal/mol (3969.6520 without restraints) Performing minimization step: 4190. Total energy = 3979.8261 kcal/mol (3968.7122 without restraints) Performing minimization step: 4191. Total energy = 3978.8838 kcal/mol (3967.7733 without restraints) Performing minimization step: 4192. Total energy = 3977.9424 kcal/mol (3966.8353 without restraints) Performing minimization step: 4193. Total energy = 3977.0013 kcal/mol (3965.8977 without restraints) Performing minimization step: 4194. Total energy = 3976.0618 kcal/mol (3964.9615 without restraints) Performing minimization step: 4195. Total energy = 3975.1231 kcal/mol (3964.0262 without restraints) Performing minimization step: 4196. Total energy = 3974.1849 kcal/mol (3963.0913 without restraints) Performing minimization step: 4197. Total energy = 3973.2485 kcal/mol (3962.1584 without restraints) Performing minimization step: 4198. Total energy = 3972.3130 kcal/mol (3961.2264 without restraints) Performing minimization step: 4199. Total energy = 3971.3786 kcal/mol (3960.2952 without restraints) Performing minimization step: 4200. Total energy = 3970.4456 kcal/mol (3959.3656 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 3969.5131 kcal/mol (3958.4366 without restraints) Performing minimization step: 4202. Total energy = 3968.5817 kcal/mol (3957.5087 without restraints) Performing minimization step: 4203. Total energy = 3967.6514 kcal/mol (3956.5815 without restraints) Performing minimization step: 4204. Total energy = 3966.7218 kcal/mol (3955.6554 without restraints) Performing minimization step: 4205. Total energy = 3965.7934 kcal/mol (3954.7304 without restraints) Performing minimization step: 4206. Total energy = 3964.8659 kcal/mol (3953.8062 without restraints) Performing minimization step: 4207. Total energy = 3963.9393 kcal/mol (3952.8830 without restraints) Performing minimization step: 4208. Total energy = 3963.0138 kcal/mol (3951.9608 without restraints) Performing minimization step: 4209. Total energy = 3962.0897 kcal/mol (3951.0401 without restraints) Performing minimization step: 4210. Total energy = 3961.1664 kcal/mol (3950.1202 without restraints) Performing minimization step: 4211. Total energy = 3960.2440 kcal/mol (3949.2012 without restraints) Performing minimization step: 4212. Total energy = 3959.3227 kcal/mol (3948.2833 without restraints) Performing minimization step: 4213. Total energy = 3958.4021 kcal/mol (3947.3660 without restraints) Performing minimization step: 4214. Total energy = 3957.4825 kcal/mol (3946.4497 without restraints) Performing minimization step: 4215. Total energy = 3956.5638 kcal/mol (3945.5344 without restraints) Performing minimization step: 4216. Total energy = 3955.6461 kcal/mol (3944.6200 without restraints) Performing minimization step: 4217. Total energy = 3954.7289 kcal/mol (3943.7062 without restraints) Performing minimization step: 4218. Total energy = 3953.8131 kcal/mol (3942.7938 without restraints) Performing minimization step: 4219. Total energy = 3952.8989 kcal/mol (3941.8832 without restraints) Performing minimization step: 4220. Total energy = 3951.9854 kcal/mol (3940.9728 without restraints) Performing minimization step: 4221. Total energy = 3951.0730 kcal/mol (3940.0638 without restraints) Performing minimization step: 4222. Total energy = 3950.1614 kcal/mol (3939.1556 without restraints) Performing minimization step: 4223. Total energy = 3949.2509 kcal/mol (3938.2483 without restraints) Performing minimization step: 4224. Total energy = 3948.3412 kcal/mol (3937.3418 without restraints) Performing minimization step: 4225. Total energy = 3947.4324 kcal/mol (3936.4366 without restraints) Performing minimization step: 4226. Total energy = 3946.5251 kcal/mol (3935.5327 without restraints) Performing minimization step: 4227. Total energy = 3945.6184 kcal/mol (3934.6293 without restraints) Performing minimization step: 4228. Total energy = 3944.7128 kcal/mol (3933.7270 without restraints) Performing minimization step: 4229. Total energy = 3943.8080 kcal/mol (3932.8255 without restraints) Performing minimization step: 4230. Total energy = 3942.9041 kcal/mol (3931.9249 without restraints) Performing minimization step: 4231. Total energy = 3942.0011 kcal/mol (3931.0253 without restraints) Performing minimization step: 4232. Total energy = 3941.0990 kcal/mol (3930.1266 without restraints) Performing minimization step: 4233. Total energy = 3940.1980 kcal/mol (3929.2289 without restraints) Performing minimization step: 4234. Total energy = 3939.2980 kcal/mol (3928.3323 without restraints) Performing minimization step: 4235. Total energy = 3938.3991 kcal/mol (3927.4368 without restraints) Performing minimization step: 4236. Total energy = 3937.5011 kcal/mol (3926.5420 without restraints) Performing minimization step: 4237. Total energy = 3936.6038 kcal/mol (3925.6482 without restraints) Performing minimization step: 4238. Total energy = 3935.7074 kcal/mol (3924.7550 without restraints) Performing minimization step: 4239. Total energy = 3934.8121 kcal/mol (3923.8631 without restraints) Performing minimization step: 4240. Total energy = 3933.9182 kcal/mol (3922.9724 without restraints) Performing minimization step: 4241. Total energy = 3933.0256 kcal/mol (3922.0831 without restraints) Performing minimization step: 4242. Total energy = 3932.1337 kcal/mol (3921.1948 without restraints) Performing minimization step: 4243. Total energy = 3931.2424 kcal/mol (3920.3066 without restraints) Performing minimization step: 4244. Total energy = 3930.3518 kcal/mol (3919.4193 without restraints) Performing minimization step: 4245. Total energy = 3929.4624 kcal/mol (3918.5336 without restraints) Performing minimization step: 4246. Total energy = 3928.5740 kcal/mol (3917.6483 without restraints) Performing minimization step: 4247. Total energy = 3927.6863 kcal/mol (3916.7637 without restraints) Performing minimization step: 4248. Total energy = 3926.7995 kcal/mol (3915.8805 without restraints) Performing minimization step: 4249. Total energy = 3925.9136 kcal/mol (3914.9977 without restraints) Performing minimization step: 4250. Total energy = 3925.0287 kcal/mol (3914.1163 without restraints) Performing minimization step: 4251. Total energy = 3924.1453 kcal/mol (3913.2361 without restraints) Performing minimization step: 4252. Total energy = 3923.2627 kcal/mol (3912.3570 without restraints) Performing minimization step: 4253. Total energy = 3922.3809 kcal/mol (3911.4783 without restraints) Performing minimization step: 4254. Total energy = 3921.5002 kcal/mol (3910.6010 without restraints) Performing minimization step: 4255. Total energy = 3920.6208 kcal/mol (3909.7248 without restraints) Performing minimization step: 4256. Total energy = 3919.7419 kcal/mol (3908.8492 without restraints) Performing minimization step: 4257. Total energy = 3918.8635 kcal/mol (3907.9742 without restraints) Performing minimization step: 4258. Total energy = 3917.9861 kcal/mol (3907.1001 without restraints) Performing minimization step: 4259. Total energy = 3917.1103 kcal/mol (3906.2278 without restraints) Performing minimization step: 4260. Total energy = 3916.2352 kcal/mol (3905.3559 without restraints) Performing minimization step: 4261. Total energy = 3915.3612 kcal/mol (3904.4851 without restraints) Performing minimization step: 4262. Total energy = 3914.4880 kcal/mol (3903.6150 without restraints) Performing minimization step: 4263. Total energy = 3913.6156 kcal/mol (3902.7459 without restraints) Performing minimization step: 4264. Total energy = 3912.7436 kcal/mol (3901.8774 without restraints) Performing minimization step: 4265. Total energy = 3911.8731 kcal/mol (3901.0103 without restraints) Performing minimization step: 4266. Total energy = 3911.0031 kcal/mol (3900.1435 without restraints) Performing minimization step: 4267. Total energy = 3910.1346 kcal/mol (3899.2782 without restraints) Performing minimization step: 4268. Total energy = 3909.2666 kcal/mol (3898.4135 without restraints) Performing minimization step: 4269. Total energy = 3908.3998 kcal/mol (3897.5501 without restraints) Performing minimization step: 4270. Total energy = 3907.5343 kcal/mol (3896.6878 without restraints) Performing minimization step: 4271. Total energy = 3906.6690 kcal/mol (3895.8259 without restraints) Performing minimization step: 4272. Total energy = 3905.8049 kcal/mol (3894.9651 without restraints) Performing minimization step: 4273. Total energy = 3904.9420 kcal/mol (3894.1054 without restraints) Performing minimization step: 4274. Total energy = 3904.0794 kcal/mol (3893.2461 without restraints) Performing minimization step: 4275. Total energy = 3903.2182 kcal/mol (3892.3883 without restraints) Performing minimization step: 4276. Total energy = 3902.3578 kcal/mol (3891.5310 without restraints) Performing minimization step: 4277. Total energy = 3901.4982 kcal/mol (3890.6748 without restraints) Performing minimization step: 4278. Total energy = 3900.6394 kcal/mol (3889.8193 without restraints) Performing minimization step: 4279. Total energy = 3899.7820 kcal/mol (3888.9651 without restraints) Performing minimization step: 4280. Total energy = 3898.9259 kcal/mol (3888.1122 without restraints) Performing minimization step: 4281. Total energy = 3898.0704 kcal/mol (3887.2600 without restraints) Performing minimization step: 4282. Total energy = 3897.2156 kcal/mol (3886.4086 without restraints) Performing minimization step: 4283. Total energy = 3896.3628 kcal/mol (3885.5590 without restraints) Performing minimization step: 4284. Total energy = 3895.5095 kcal/mol (3884.7090 without restraints) Performing minimization step: 4285. Total energy = 3894.6572 kcal/mol (3883.8599 without restraints) Performing minimization step: 4286. Total energy = 3893.8055 kcal/mol (3883.0115 without restraints) Performing minimization step: 4287. Total energy = 3892.9553 kcal/mol (3882.1645 without restraints) Performing minimization step: 4288. Total energy = 3892.1056 kcal/mol (3881.3182 without restraints) Performing minimization step: 4289. Total energy = 3891.2567 kcal/mol (3880.4725 without restraints) Performing minimization step: 4290. Total energy = 3890.4087 kcal/mol (3879.6278 without restraints) Performing minimization step: 4291. Total energy = 3889.5618 kcal/mol (3878.7842 without restraints) Performing minimization step: 4292. Total energy = 3888.7158 kcal/mol (3877.9414 without restraints) Performing minimization step: 4293. Total energy = 3887.8705 kcal/mol (3877.0993 without restraints) Performing minimization step: 4294. Total energy = 3887.0268 kcal/mol (3876.2589 without restraints) Performing minimization step: 4295. Total energy = 3886.1833 kcal/mol (3875.4186 without restraints) Performing minimization step: 4296. Total energy = 3885.3407 kcal/mol (3874.5793 without restraints) Performing minimization step: 4297. Total energy = 3884.4989 kcal/mol (3873.7408 without restraints) Performing minimization step: 4298. Total energy = 3883.6583 kcal/mol (3872.9035 without restraints) Performing minimization step: 4299. Total energy = 3882.8183 kcal/mol (3872.0666 without restraints) Performing minimization step: 4300. Total energy = 3881.9791 kcal/mol (3871.2307 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 3881.1409 kcal/mol (3870.3960 without restraints) Performing minimization step: 4302. Total energy = 3880.3041 kcal/mol (3869.5622 without restraints) Performing minimization step: 4303. Total energy = 3879.4677 kcal/mol (3868.7290 without restraints) Performing minimization step: 4304. Total energy = 3878.6324 kcal/mol (3867.8971 without restraints) Performing minimization step: 4305. Total energy = 3877.7979 kcal/mol (3867.0659 without restraints) Performing minimization step: 4306. Total energy = 3876.9643 kcal/mol (3866.2354 without restraints) Performing minimization step: 4307. Total energy = 3876.1312 kcal/mol (3865.4055 without restraints) Performing minimization step: 4308. Total energy = 3875.2995 kcal/mol (3864.5771 without restraints) Performing minimization step: 4309. Total energy = 3874.4684 kcal/mol (3863.7492 without restraints) Performing minimization step: 4310. Total energy = 3873.6383 kcal/mol (3862.9223 without restraints) Performing minimization step: 4311. Total energy = 3872.8092 kcal/mol (3862.0965 without restraints) Performing minimization step: 4312. Total energy = 3871.9808 kcal/mol (3861.2714 without restraints) Performing minimization step: 4313. Total energy = 3871.1532 kcal/mol (3860.4469 without restraints) Performing minimization step: 4314. Total energy = 3870.3262 kcal/mol (3859.6231 without restraints) Performing minimization step: 4315. Total energy = 3869.5002 kcal/mol (3858.8004 without restraints) Performing minimization step: 4316. Total energy = 3868.6751 kcal/mol (3857.9785 without restraints) Performing minimization step: 4317. Total energy = 3867.8506 kcal/mol (3857.1572 without restraints) Performing minimization step: 4318. Total energy = 3867.0272 kcal/mol (3856.3371 without restraints) Performing minimization step: 4319. Total energy = 3866.2050 kcal/mol (3855.5181 without restraints) Performing minimization step: 4320. Total energy = 3865.3834 kcal/mol (3854.6999 without restraints) Performing minimization step: 4321. Total energy = 3864.5630 kcal/mol (3853.8825 without restraints) Performing minimization step: 4322. Total energy = 3863.7441 kcal/mol (3853.0668 without restraints) Performing minimization step: 4323. Total energy = 3862.9256 kcal/mol (3852.2516 without restraints) Performing minimization step: 4324. Total energy = 3862.1070 kcal/mol (3851.4363 without restraints) Performing minimization step: 4325. Total energy = 3861.2898 kcal/mol (3850.6222 without restraints) Performing minimization step: 4326. Total energy = 3860.4736 kcal/mol (3849.8092 without restraints) Performing minimization step: 4327. Total energy = 3859.6580 kcal/mol (3848.9968 without restraints) Performing minimization step: 4328. Total energy = 3858.8435 kcal/mol (3848.1856 without restraints) Performing minimization step: 4329. Total energy = 3858.0301 kcal/mol (3847.3754 without restraints) Performing minimization step: 4330. Total energy = 3857.2178 kcal/mol (3846.5662 without restraints) Performing minimization step: 4331. Total energy = 3856.4058 kcal/mol (3845.7575 without restraints) Performing minimization step: 4332. Total energy = 3855.5945 kcal/mol (3844.9493 without restraints) Performing minimization step: 4333. Total energy = 3854.7840 kcal/mol (3844.1422 without restraints) Performing minimization step: 4334. Total energy = 3853.9748 kcal/mol (3843.3360 without restraints) Performing minimization step: 4335. Total energy = 3853.1660 kcal/mol (3842.5304 without restraints) Performing minimization step: 4336. Total energy = 3852.3585 kcal/mol (3841.7261 without restraints) Performing minimization step: 4337. Total energy = 3851.5509 kcal/mol (3840.9218 without restraints) Performing minimization step: 4338. Total energy = 3850.7446 kcal/mol (3840.1187 without restraints) Performing minimization step: 4339. Total energy = 3849.9393 kcal/mol (3839.3166 without restraints) Performing minimization step: 4340. Total energy = 3849.1349 kcal/mol (3838.5153 without restraints) Performing minimization step: 4341. Total energy = 3848.3314 kcal/mol (3837.7150 without restraints) Performing minimization step: 4342. Total energy = 3847.5286 kcal/mol (3836.9154 without restraints) Performing minimization step: 4343. Total energy = 3846.7266 kcal/mol (3836.1166 without restraints) Performing minimization step: 4344. Total energy = 3845.9256 kcal/mol (3835.3187 without restraints) Performing minimization step: 4345. Total energy = 3845.1253 kcal/mol (3834.5217 without restraints) Performing minimization step: 4346. Total energy = 3844.3258 kcal/mol (3833.7253 without restraints) Performing minimization step: 4347. Total energy = 3843.5271 kcal/mol (3832.9299 without restraints) Performing minimization step: 4348. Total energy = 3842.7293 kcal/mol (3832.1352 without restraints) Performing minimization step: 4349. Total energy = 3841.9322 kcal/mol (3831.3413 without restraints) Performing minimization step: 4350. Total energy = 3841.1359 kcal/mol (3830.5481 without restraints) Performing minimization step: 4351. Total energy = 3840.3404 kcal/mol (3829.7555 without restraints) Performing minimization step: 4352. Total energy = 3839.5449 kcal/mol (3828.9635 without restraints) Performing minimization step: 4353. Total energy = 3838.7518 kcal/mol (3828.1737 without restraints) Performing minimization step: 4354. Total energy = 3837.9591 kcal/mol (3827.3842 without restraints) Performing minimization step: 4355. Total energy = 3837.1674 kcal/mol (3826.5956 without restraints) Performing minimization step: 4356. Total energy = 3836.3762 kcal/mol (3825.8076 without restraints) Performing minimization step: 4357. Total energy = 3835.5860 kcal/mol (3825.0205 without restraints) Performing minimization step: 4358. Total energy = 3834.7964 kcal/mol (3824.2340 without restraints) Performing minimization step: 4359. Total energy = 3834.0075 kcal/mol (3823.4483 without restraints) Performing minimization step: 4360. Total energy = 3833.2194 kcal/mol (3822.6634 without restraints) Performing minimization step: 4361. Total energy = 3832.4321 kcal/mol (3821.8791 without restraints) Performing minimization step: 4362. Total energy = 3831.6453 kcal/mol (3821.0956 without restraints) Performing minimization step: 4363. Total energy = 3830.8599 kcal/mol (3820.3135 without restraints) Performing minimization step: 4364. Total energy = 3830.0753 kcal/mol (3819.5318 without restraints) Performing minimization step: 4365. Total energy = 3829.2912 kcal/mol (3818.7510 without restraints) Performing minimization step: 4366. Total energy = 3828.5088 kcal/mol (3817.9719 without restraints) Performing minimization step: 4367. Total energy = 3827.7268 kcal/mol (3817.1929 without restraints) Performing minimization step: 4368. Total energy = 3826.9454 kcal/mol (3816.4148 without restraints) Performing minimization step: 4369. Total energy = 3826.1647 kcal/mol (3815.6371 without restraints) Performing minimization step: 4370. Total energy = 3825.3848 kcal/mol (3814.8604 without restraints) Performing minimization step: 4371. Total energy = 3824.6060 kcal/mol (3814.0846 without restraints) Performing minimization step: 4372. Total energy = 3823.8278 kcal/mol (3813.3096 without restraints) Performing minimization step: 4373. Total energy = 3823.0505 kcal/mol (3812.5356 without restraints) Performing minimization step: 4374. Total energy = 3822.2741 kcal/mol (3811.7622 without restraints) Performing minimization step: 4375. Total energy = 3821.4985 kcal/mol (3810.9897 without restraints) Performing minimization step: 4376. Total energy = 3820.7233 kcal/mol (3810.2178 without restraints) Performing minimization step: 4377. Total energy = 3819.9490 kcal/mol (3809.4466 without restraints) Performing minimization step: 4378. Total energy = 3819.1756 kcal/mol (3808.6762 without restraints) Performing minimization step: 4379. Total energy = 3818.4029 kcal/mol (3807.9067 without restraints) Performing minimization step: 4380. Total energy = 3817.6312 kcal/mol (3807.1382 without restraints) Performing minimization step: 4381. Total energy = 3816.8605 kcal/mol (3806.3706 without restraints) Performing minimization step: 4382. Total energy = 3816.0910 kcal/mol (3805.6042 without restraints) Performing minimization step: 4383. Total energy = 3815.3219 kcal/mol (3804.8382 without restraints) Performing minimization step: 4384. Total energy = 3814.5538 kcal/mol (3804.0732 without restraints) Performing minimization step: 4385. Total energy = 3813.7860 kcal/mol (3803.3087 without restraints) Performing minimization step: 4386. Total energy = 3813.0187 kcal/mol (3802.5444 without restraints) Performing minimization step: 4387. Total energy = 3812.2524 kcal/mol (3801.7813 without restraints) Performing minimization step: 4388. Total energy = 3811.4868 kcal/mol (3801.0187 without restraints) Performing minimization step: 4389. Total energy = 3810.7218 kcal/mol (3800.2569 without restraints) Performing minimization step: 4390. Total energy = 3809.9584 kcal/mol (3799.4967 without restraints) Performing minimization step: 4391. Total energy = 3809.1953 kcal/mol (3798.7366 without restraints) Performing minimization step: 4392. Total energy = 3808.4333 kcal/mol (3797.9777 without restraints) Performing minimization step: 4393. Total energy = 3807.6718 kcal/mol (3797.2193 without restraints) Performing minimization step: 4394. Total energy = 3806.9111 kcal/mol (3796.4617 without restraints) Performing minimization step: 4395. Total energy = 3806.1508 kcal/mol (3795.7045 without restraints) Performing minimization step: 4396. Total energy = 3805.3913 kcal/mol (3794.9482 without restraints) Performing minimization step: 4397. Total energy = 3804.6328 kcal/mol (3794.1928 without restraints) Performing minimization step: 4398. Total energy = 3803.8748 kcal/mol (3793.4378 without restraints) Performing minimization step: 4399. Total energy = 3803.1181 kcal/mol (3792.6844 without restraints) Performing minimization step: 4400. Total energy = 3802.3622 kcal/mol (3791.9314 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 3801.6066 kcal/mol (3791.1790 without restraints) Performing minimization step: 4402. Total energy = 3800.8521 kcal/mol (3790.4275 without restraints) Performing minimization step: 4403. Total energy = 3800.0985 kcal/mol (3789.6775 without restraints) Performing minimization step: 4404. Total energy = 3799.3453 kcal/mol (3788.9270 without restraints) Performing minimization step: 4405. Total energy = 3798.5931 kcal/mol (3788.1778 without restraints) Performing minimization step: 4406. Total energy = 3797.8414 kcal/mol (3787.4292 without restraints) Performing minimization step: 4407. Total energy = 3797.0905 kcal/mol (3786.6815 without restraints) Performing minimization step: 4408. Total energy = 3796.3404 kcal/mol (3785.9344 without restraints) Performing minimization step: 4409. Total energy = 3795.5909 kcal/mol (3785.1881 without restraints) Performing minimization step: 4410. Total energy = 3794.8424 kcal/mol (3784.4426 without restraints) Performing minimization step: 4411. Total energy = 3794.0946 kcal/mol (3783.6979 without restraints) Performing minimization step: 4412. Total energy = 3793.3478 kcal/mol (3782.9542 without restraints) Performing minimization step: 4413. Total energy = 3792.6022 kcal/mol (3782.2117 without restraints) Performing minimization step: 4414. Total energy = 3791.8566 kcal/mol (3781.4692 without restraints) Performing minimization step: 4415. Total energy = 3791.1117 kcal/mol (3780.7273 without restraints) Performing minimization step: 4416. Total energy = 3790.3675 kcal/mol (3779.9862 without restraints) Performing minimization step: 4417. Total energy = 3789.6241 kcal/mol (3779.2459 without restraints) Performing minimization step: 4418. Total energy = 3788.8819 kcal/mol (3778.5067 without restraints) Performing minimization step: 4419. Total energy = 3788.1403 kcal/mol (3777.7682 without restraints) Performing minimization step: 4420. Total energy = 3787.3997 kcal/mol (3777.0308 without restraints) Performing minimization step: 4421. Total energy = 3786.6595 kcal/mol (3776.2935 without restraints) Performing minimization step: 4422. Total energy = 3785.9197 kcal/mol (3775.5568 without restraints) Performing minimization step: 4423. Total energy = 3785.1813 kcal/mol (3774.8216 without restraints) Performing minimization step: 4424. Total energy = 3784.4438 kcal/mol (3774.0872 without restraints) Performing minimization step: 4425. Total energy = 3783.7066 kcal/mol (3773.3529 without restraints) Performing minimization step: 4426. Total energy = 3782.9701 kcal/mol (3772.6195 without restraints) Performing minimization step: 4427. Total energy = 3782.2344 kcal/mol (3771.8870 without restraints) Performing minimization step: 4428. Total energy = 3781.4996 kcal/mol (3771.1551 without restraints) Performing minimization step: 4429. Total energy = 3780.7650 kcal/mol (3770.4236 without restraints) Performing minimization step: 4430. Total energy = 3780.0312 kcal/mol (3769.6931 without restraints) Performing minimization step: 4431. Total energy = 3779.2989 kcal/mol (3768.9636 without restraints) Performing minimization step: 4432. Total energy = 3778.5668 kcal/mol (3768.2346 without restraints) Performing minimization step: 4433. Total energy = 3777.8353 kcal/mol (3767.5061 without restraints) Performing minimization step: 4434. Total energy = 3777.1043 kcal/mol (3766.7781 without restraints) Performing minimization step: 4435. Total energy = 3776.3744 kcal/mol (3766.0513 without restraints) Performing minimization step: 4436. Total energy = 3775.6452 kcal/mol (3765.3252 without restraints) Performing minimization step: 4437. Total energy = 3774.9164 kcal/mol (3764.5994 without restraints) Performing minimization step: 4438. Total energy = 3774.1885 kcal/mol (3763.8745 without restraints) Performing minimization step: 4439. Total energy = 3773.4616 kcal/mol (3763.1507 without restraints) Performing minimization step: 4440. Total energy = 3772.7351 kcal/mol (3762.4273 without restraints) Performing minimization step: 4441. Total energy = 3772.0092 kcal/mol (3761.7044 without restraints) Performing minimization step: 4442. Total energy = 3771.2843 kcal/mol (3760.9824 without restraints) Performing minimization step: 4443. Total energy = 3770.5600 kcal/mol (3760.2612 without restraints) Performing minimization step: 4444. Total energy = 3769.8370 kcal/mol (3759.5413 without restraints) Performing minimization step: 4445. Total energy = 3769.1142 kcal/mol (3758.8216 without restraints) Performing minimization step: 4446. Total energy = 3768.3925 kcal/mol (3758.1030 without restraints) Performing minimization step: 4447. Total energy = 3767.6711 kcal/mol (3757.3845 without restraints) Performing minimization step: 4448. Total energy = 3766.9508 kcal/mol (3756.6672 without restraints) Performing minimization step: 4449. Total energy = 3766.2308 kcal/mol (3755.9502 without restraints) Performing minimization step: 4450. Total energy = 3765.5116 kcal/mol (3755.2341 without restraints) Performing minimization step: 4451. Total energy = 3764.7933 kcal/mol (3754.5188 without restraints) Performing minimization step: 4452. Total energy = 3764.0757 kcal/mol (3753.8044 without restraints) Performing minimization step: 4453. Total energy = 3763.3589 kcal/mol (3753.0903 without restraints) Performing minimization step: 4454. Total energy = 3762.6427 kcal/mol (3752.3773 without restraints) Performing minimization step: 4455. Total energy = 3761.9270 kcal/mol (3751.6645 without restraints) Performing minimization step: 4456. Total energy = 3761.2118 kcal/mol (3750.9523 without restraints) Performing minimization step: 4457. Total energy = 3760.4978 kcal/mol (3750.2415 without restraints) Performing minimization step: 4458. Total energy = 3759.7846 kcal/mol (3749.5312 without restraints) Performing minimization step: 4459. Total energy = 3759.0720 kcal/mol (3748.8216 without restraints) Performing minimization step: 4460. Total energy = 3758.3600 kcal/mol (3748.1127 without restraints) Performing minimization step: 4461. Total energy = 3757.6487 kcal/mol (3747.4043 without restraints) Performing minimization step: 4462. Total energy = 3756.9383 kcal/mol (3746.6973 without restraints) Performing minimization step: 4463. Total energy = 3756.2286 kcal/mol (3745.9903 without restraints) Performing minimization step: 4464. Total energy = 3755.5191 kcal/mol (3745.2838 without restraints) Performing minimization step: 4465. Total energy = 3754.8107 kcal/mol (3744.5784 without restraints) Performing minimization step: 4466. Total energy = 3754.1032 kcal/mol (3743.8739 without restraints) Performing minimization step: 4467. Total energy = 3753.3961 kcal/mol (3743.1697 without restraints) Performing minimization step: 4468. Total energy = 3752.6898 kcal/mol (3742.4665 without restraints) Performing minimization step: 4469. Total energy = 3751.9844 kcal/mol (3741.7640 without restraints) Performing minimization step: 4470. Total energy = 3751.2790 kcal/mol (3741.0616 without restraints) Performing minimization step: 4471. Total energy = 3750.5747 kcal/mol (3740.3604 without restraints) Performing minimization step: 4472. Total energy = 3749.8716 kcal/mol (3739.6604 without restraints) Performing minimization step: 4473. Total energy = 3749.1689 kcal/mol (3738.9604 without restraints) Performing minimization step: 4474. Total energy = 3748.4663 kcal/mol (3738.2609 without restraints) Performing minimization step: 4475. Total energy = 3747.7648 kcal/mol (3737.5626 without restraints) Performing minimization step: 4476. Total energy = 3747.0640 kcal/mol (3736.8646 without restraints) Performing minimization step: 4477. Total energy = 3746.3634 kcal/mol (3736.1670 without restraints) Performing minimization step: 4478. Total energy = 3745.6635 kcal/mol (3735.4699 without restraints) Performing minimization step: 4479. Total energy = 3744.9646 kcal/mol (3734.7741 without restraints) Performing minimization step: 4480. Total energy = 3744.2668 kcal/mol (3734.0794 without restraints) Performing minimization step: 4481. Total energy = 3743.5696 kcal/mol (3733.3850 without restraints) Performing minimization step: 4482. Total energy = 3742.8732 kcal/mol (3732.6916 without restraints) Performing minimization step: 4483. Total energy = 3742.1770 kcal/mol (3731.9984 without restraints) Performing minimization step: 4484. Total energy = 3741.4815 kcal/mol (3731.3058 without restraints) Performing minimization step: 4485. Total energy = 3740.7873 kcal/mol (3730.6146 without restraints) Performing minimization step: 4486. Total energy = 3740.0931 kcal/mol (3729.9234 without restraints) Performing minimization step: 4487. Total energy = 3739.3997 kcal/mol (3729.2330 without restraints) Performing minimization step: 4488. Total energy = 3738.7070 kcal/mol (3728.5433 without restraints) Performing minimization step: 4489. Total energy = 3738.0146 kcal/mol (3727.8538 without restraints) Performing minimization step: 4490. Total energy = 3737.3232 kcal/mol (3727.1655 without restraints) Performing minimization step: 4491. Total energy = 3736.6330 kcal/mol (3726.4781 without restraints) Performing minimization step: 4492. Total energy = 3735.9428 kcal/mol (3725.7909 without restraints) Performing minimization step: 4493. Total energy = 3735.2533 kcal/mol (3725.1044 without restraints) Performing minimization step: 4494. Total energy = 3734.5647 kcal/mol (3724.4188 without restraints) Performing minimization step: 4495. Total energy = 3733.8768 kcal/mol (3723.7338 without restraints) Performing minimization step: 4496. Total energy = 3733.1893 kcal/mol (3723.0492 without restraints) Performing minimization step: 4497. Total energy = 3732.5024 kcal/mol (3722.3653 without restraints) Performing minimization step: 4498. Total energy = 3731.8166 kcal/mol (3721.6825 without restraints) Performing minimization step: 4499. Total energy = 3731.1309 kcal/mol (3720.9996 without restraints) Performing minimization step: 4500. Total energy = 3730.4461 kcal/mol (3720.3177 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 3729.7618 kcal/mol (3719.6365 without restraints) Performing minimization step: 4502. Total energy = 3729.0783 kcal/mol (3718.9559 without restraints) Performing minimization step: 4503. Total energy = 3728.3957 kcal/mol (3718.2762 without restraints) Performing minimization step: 4504. Total energy = 3727.7135 kcal/mol (3717.5970 without restraints) Performing minimization step: 4505. Total energy = 3727.0322 kcal/mol (3716.9186 without restraints) Performing minimization step: 4506. Total energy = 3726.3518 kcal/mol (3716.2411 without restraints) Performing minimization step: 4507. Total energy = 3725.6720 kcal/mol (3715.5643 without restraints) Performing minimization step: 4508. Total energy = 3724.9921 kcal/mol (3714.8869 without restraints) Performing minimization step: 4509. Total energy = 3724.3124 kcal/mol (3714.2102 without restraints) Performing minimization step: 4510. Total energy = 3723.6338 kcal/mol (3713.5348 without restraints) Performing minimization step: 4511. Total energy = 3722.9568 kcal/mol (3712.8608 without restraints) Performing minimization step: 4512. Total energy = 3722.2801 kcal/mol (3712.1870 without restraints) Performing minimization step: 4513. Total energy = 3721.6040 kcal/mol (3711.5138 without restraints) Performing minimization step: 4514. Total energy = 3720.9281 kcal/mol (3710.8408 without restraints) Performing minimization step: 4515. Total energy = 3720.2534 kcal/mol (3710.1691 without restraints) Performing minimization step: 4516. Total energy = 3719.5788 kcal/mol (3709.4973 without restraints) Performing minimization step: 4517. Total energy = 3718.9052 kcal/mol (3708.8268 without restraints) Performing minimization step: 4518. Total energy = 3718.2324 kcal/mol (3708.1569 without restraints) Performing minimization step: 4519. Total energy = 3717.5599 kcal/mol (3707.4872 without restraints) Performing minimization step: 4520. Total energy = 3716.8882 kcal/mol (3706.8185 without restraints) Performing minimization step: 4521. Total energy = 3716.2173 kcal/mol (3706.1504 without restraints) Performing minimization step: 4522. Total energy = 3715.5467 kcal/mol (3705.4828 without restraints) Performing minimization step: 4523. Total energy = 3714.8768 kcal/mol (3704.8157 without restraints) Performing minimization step: 4524. Total energy = 3714.2078 kcal/mol (3704.1496 without restraints) Performing minimization step: 4525. Total energy = 3713.5398 kcal/mol (3703.4846 without restraints) Performing minimization step: 4526. Total energy = 3712.8721 kcal/mol (3702.8198 without restraints) Performing minimization step: 4527. Total energy = 3712.2055 kcal/mol (3702.1560 without restraints) Performing minimization step: 4528. Total energy = 3711.5395 kcal/mol (3701.4929 without restraints) Performing minimization step: 4529. Total energy = 3710.8736 kcal/mol (3700.8299 without restraints) Performing minimization step: 4530. Total energy = 3710.2080 kcal/mol (3700.1673 without restraints) Performing minimization step: 4531. Total energy = 3709.5434 kcal/mol (3699.5055 without restraints) Performing minimization step: 4532. Total energy = 3708.8791 kcal/mol (3698.8441 without restraints) Performing minimization step: 4533. Total energy = 3708.2152 kcal/mol (3698.1832 without restraints) Performing minimization step: 4534. Total energy = 3707.5523 kcal/mol (3697.5231 without restraints) Performing minimization step: 4535. Total energy = 3706.8900 kcal/mol (3696.8637 without restraints) Performing minimization step: 4536. Total energy = 3706.2282 kcal/mol (3696.2048 without restraints) Performing minimization step: 4537. Total energy = 3705.5671 kcal/mol (3695.5466 without restraints) Performing minimization step: 4538. Total energy = 3704.9064 kcal/mol (3694.8888 without restraints) Performing minimization step: 4539. Total energy = 3704.2464 kcal/mol (3694.2316 without restraints) Performing minimization step: 4540. Total energy = 3703.5871 kcal/mol (3693.5752 without restraints) Performing minimization step: 4541. Total energy = 3702.9284 kcal/mol (3692.9194 without restraints) Performing minimization step: 4542. Total energy = 3702.2704 kcal/mol (3692.2642 without restraints) Performing minimization step: 4543. Total energy = 3701.6129 kcal/mol (3691.6096 without restraints) Performing minimization step: 4544. Total energy = 3700.9562 kcal/mol (3690.9558 without restraints) Performing minimization step: 4545. Total energy = 3700.3000 kcal/mol (3690.3025 without restraints) Performing minimization step: 4546. Total energy = 3699.6444 kcal/mol (3689.6497 without restraints) Performing minimization step: 4547. Total energy = 3698.9898 kcal/mol (3688.9980 without restraints) Performing minimization step: 4548. Total energy = 3698.3353 kcal/mol (3688.3463 without restraints) Performing minimization step: 4549. Total energy = 3697.6818 kcal/mol (3687.6956 without restraints) Performing minimization step: 4550. Total energy = 3697.0285 kcal/mol (3687.0452 without restraints) Performing minimization step: 4551. Total energy = 3696.3761 kcal/mol (3686.3957 without restraints) Performing minimization step: 4552. Total energy = 3695.7247 kcal/mol (3685.7474 without restraints) Performing minimization step: 4553. Total energy = 3695.0739 kcal/mol (3685.0993 without restraints) Performing minimization step: 4554. Total energy = 3694.4234 kcal/mol (3684.4517 without restraints) Performing minimization step: 4555. Total energy = 3693.7734 kcal/mol (3683.8045 without restraints) Performing minimization step: 4556. Total energy = 3693.1239 kcal/mol (3683.1578 without restraints) Performing minimization step: 4557. Total energy = 3692.4746 kcal/mol (3682.5112 without restraints) Performing minimization step: 4558. Total energy = 3691.8261 kcal/mol (3681.8657 without restraints) Performing minimization step: 4559. Total energy = 3691.1784 kcal/mol (3681.2208 without restraints) Performing minimization step: 4560. Total energy = 3690.5317 kcal/mol (3680.5770 without restraints) Performing minimization step: 4561. Total energy = 3689.8852 kcal/mol (3679.9333 without restraints) Performing minimization step: 4562. Total energy = 3689.2393 kcal/mol (3679.2902 without restraints) Performing minimization step: 4563. Total energy = 3688.5939 kcal/mol (3678.6477 without restraints) Performing minimization step: 4564. Total energy = 3687.9502 kcal/mol (3678.0069 without restraints) Performing minimization step: 4565. Total energy = 3687.3060 kcal/mol (3677.3654 without restraints) Performing minimization step: 4566. Total energy = 3686.6625 kcal/mol (3676.7248 without restraints) Performing minimization step: 4567. Total energy = 3686.0195 kcal/mol (3676.0846 without restraints) Performing minimization step: 4568. Total energy = 3685.3771 kcal/mol (3675.4450 without restraints) Performing minimization step: 4569. Total energy = 3684.7350 kcal/mol (3674.8058 without restraints) Performing minimization step: 4570. Total energy = 3684.0937 kcal/mol (3674.1672 without restraints) Performing minimization step: 4571. Total energy = 3683.4534 kcal/mol (3673.5299 without restraints) Performing minimization step: 4572. Total energy = 3682.8136 kcal/mol (3672.8928 without restraints) Performing minimization step: 4573. Total energy = 3682.1742 kcal/mol (3672.2564 without restraints) Performing minimization step: 4574. Total energy = 3681.5356 kcal/mol (3671.6205 without restraints) Performing minimization step: 4575. Total energy = 3680.8977 kcal/mol (3670.9854 without restraints) Performing minimization step: 4576. Total energy = 3680.2601 kcal/mol (3670.3506 without restraints) Performing minimization step: 4577. Total energy = 3679.6231 kcal/mol (3669.7165 without restraints) Performing minimization step: 4578. Total energy = 3678.9869 kcal/mol (3669.0831 without restraints) Performing minimization step: 4579. Total energy = 3678.3510 kcal/mol (3668.4501 without restraints) Performing minimization step: 4580. Total energy = 3677.7157 kcal/mol (3667.8175 without restraints) Performing minimization step: 4581. Total energy = 3677.0807 kcal/mol (3667.1853 without restraints) Performing minimization step: 4582. Total energy = 3676.4468 kcal/mol (3666.5542 without restraints) Performing minimization step: 4583. Total energy = 3675.8133 kcal/mol (3665.9235 without restraints) Performing minimization step: 4584. Total energy = 3675.1804 kcal/mol (3665.2935 without restraints) Performing minimization step: 4585. Total energy = 3674.5480 kcal/mol (3664.6638 without restraints) Performing minimization step: 4586. Total energy = 3673.9169 kcal/mol (3664.0355 without restraints) Performing minimization step: 4587. Total energy = 3673.2856 kcal/mol (3663.4071 without restraints) Performing minimization step: 4588. Total energy = 3672.6550 kcal/mol (3662.7793 without restraints) Performing minimization step: 4589. Total energy = 3672.0249 kcal/mol (3662.1519 without restraints) Performing minimization step: 4590. Total energy = 3671.3952 kcal/mol (3661.5250 without restraints) Performing minimization step: 4591. Total energy = 3670.7664 kcal/mol (3660.8992 without restraints) Performing minimization step: 4592. Total energy = 3670.1381 kcal/mol (3660.2735 without restraints) Performing minimization step: 4593. Total energy = 3669.5103 kcal/mol (3659.6484 without restraints) Performing minimization step: 4594. Total energy = 3668.8831 kcal/mol (3659.0240 without restraints) Performing minimization step: 4595. Total energy = 3668.2561 kcal/mol (3658.3998 without restraints) Performing minimization step: 4596. Total energy = 3667.6299 kcal/mol (3657.7764 without restraints) Performing minimization step: 4597. Total energy = 3667.0041 kcal/mol (3657.1534 without restraints) Performing minimization step: 4598. Total energy = 3666.3791 kcal/mol (3656.5311 without restraints) Performing minimization step: 4599. Total energy = 3665.7549 kcal/mol (3655.9097 without restraints) Performing minimization step: 4600. Total energy = 3665.1319 kcal/mol (3655.2894 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 3664.5086 kcal/mol (3654.6691 without restraints) Performing minimization step: 4602. Total energy = 3663.8861 kcal/mol (3654.0492 without restraints) Performing minimization step: 4603. Total energy = 3663.2640 kcal/mol (3653.4298 without restraints) Performing minimization step: 4604. Total energy = 3662.6427 kcal/mol (3652.8114 without restraints) Performing minimization step: 4605. Total energy = 3662.0215 kcal/mol (3652.1930 without restraints) Performing minimization step: 4606. Total energy = 3661.4013 kcal/mol (3651.5754 without restraints) Performing minimization step: 4607. Total energy = 3660.7813 kcal/mol (3650.9582 without restraints) Performing minimization step: 4608. Total energy = 3660.1620 kcal/mol (3650.3418 without restraints) Performing minimization step: 4609. Total energy = 3659.5431 kcal/mol (3649.7255 without restraints) Performing minimization step: 4610. Total energy = 3658.9250 kcal/mol (3649.1102 without restraints) Performing minimization step: 4611. Total energy = 3658.3073 kcal/mol (3648.4955 without restraints) Performing minimization step: 4612. Total energy = 3657.6902 kcal/mol (3647.8810 without restraints) Performing minimization step: 4613. Total energy = 3657.0735 kcal/mol (3647.2670 without restraints) Performing minimization step: 4614. Total energy = 3656.4573 kcal/mol (3646.6535 without restraints) Performing minimization step: 4615. Total energy = 3655.8418 kcal/mol (3646.0408 without restraints) Performing minimization step: 4616. Total energy = 3655.2266 kcal/mol (3645.4283 without restraints) Performing minimization step: 4617. Total energy = 3654.6119 kcal/mol (3644.8163 without restraints) Performing minimization step: 4618. Total energy = 3653.9978 kcal/mol (3644.2051 without restraints) Performing minimization step: 4619. Total energy = 3653.3843 kcal/mol (3643.5942 without restraints) Performing minimization step: 4620. Total energy = 3652.7712 kcal/mol (3642.9839 without restraints) Performing minimization step: 4621. Total energy = 3652.1591 kcal/mol (3642.3745 without restraints) Performing minimization step: 4622. Total energy = 3651.5477 kcal/mol (3641.7660 without restraints) Performing minimization step: 4623. Total energy = 3650.9368 kcal/mol (3641.1578 without restraints) Performing minimization step: 4624. Total energy = 3650.3260 kcal/mol (3640.5496 without restraints) Performing minimization step: 4625. Total energy = 3649.7158 kcal/mol (3639.9422 without restraints) Performing minimization step: 4626. Total energy = 3649.1060 kcal/mol (3639.3351 without restraints) Performing minimization step: 4627. Total energy = 3648.4970 kcal/mol (3638.7289 without restraints) Performing minimization step: 4628. Total energy = 3647.8884 kcal/mol (3638.1229 without restraints) Performing minimization step: 4629. Total energy = 3647.2804 kcal/mol (3637.5177 without restraints) Performing minimization step: 4630. Total energy = 3646.6730 kcal/mol (3636.9130 without restraints) Performing minimization step: 4631. Total energy = 3646.0658 kcal/mol (3636.3085 without restraints) Performing minimization step: 4632. Total energy = 3645.4594 kcal/mol (3635.7048 without restraints) Performing minimization step: 4633. Total energy = 3644.8534 kcal/mol (3635.1016 without restraints) Performing minimization step: 4634. Total energy = 3644.2481 kcal/mol (3634.4990 without restraints) Performing minimization step: 4635. Total energy = 3643.6430 kcal/mol (3633.8966 without restraints) Performing minimization step: 4636. Total energy = 3643.0385 kcal/mol (3633.2948 without restraints) Performing minimization step: 4637. Total energy = 3642.4348 kcal/mol (3632.6937 without restraints) Performing minimization step: 4638. Total energy = 3641.8310 kcal/mol (3632.0927 without restraints) Performing minimization step: 4639. Total energy = 3641.2285 kcal/mol (3631.4929 without restraints) Performing minimization step: 4640. Total energy = 3640.6261 kcal/mol (3630.8932 without restraints) Performing minimization step: 4641. Total energy = 3640.0248 kcal/mol (3630.2947 without restraints) Performing minimization step: 4642. Total energy = 3639.4237 kcal/mol (3629.6962 without restraints) Performing minimization step: 4643. Total energy = 3638.8229 kcal/mol (3629.0982 without restraints) Performing minimization step: 4644. Total energy = 3638.2227 kcal/mol (3628.5006 without restraints) Performing minimization step: 4645. Total energy = 3637.6234 kcal/mol (3627.9040 without restraints) Performing minimization step: 4646. Total energy = 3637.0243 kcal/mol (3627.3076 without restraints) Performing minimization step: 4647. Total energy = 3636.4255 kcal/mol (3626.7115 without restraints) Performing minimization step: 4648. Total energy = 3635.8274 kcal/mol (3626.1161 without restraints) Performing minimization step: 4649. Total energy = 3635.2297 kcal/mol (3625.5210 without restraints) Performing minimization step: 4650. Total energy = 3634.6329 kcal/mol (3624.9270 without restraints) Performing minimization step: 4651. Total energy = 3634.0362 kcal/mol (3624.3329 without restraints) Performing minimization step: 4652. Total energy = 3633.4401 kcal/mol (3623.7396 without restraints) Performing minimization step: 4653. Total energy = 3632.8447 kcal/mol (3623.1470 without restraints) Performing minimization step: 4654. Total energy = 3632.2501 kcal/mol (3622.5551 without restraints) Performing minimization step: 4655. Total energy = 3631.6559 kcal/mol (3621.9635 without restraints) Performing minimization step: 4656. Total energy = 3631.0618 kcal/mol (3621.3719 without restraints) Performing minimization step: 4657. Total energy = 3630.4679 kcal/mol (3620.7807 without restraints) Performing minimization step: 4658. Total energy = 3629.8747 kcal/mol (3620.1902 without restraints) Performing minimization step: 4659. Total energy = 3629.2825 kcal/mol (3619.6008 without restraints) Performing minimization step: 4660. Total energy = 3628.6907 kcal/mol (3619.0115 without restraints) Performing minimization step: 4661. Total energy = 3628.0993 kcal/mol (3618.4227 without restraints) Performing minimization step: 4662. Total energy = 3627.5081 kcal/mol (3617.8342 without restraints) Performing minimization step: 4663. Total energy = 3626.9175 kcal/mol (3617.2463 without restraints) Performing minimization step: 4664. Total energy = 3626.3273 kcal/mol (3616.6587 without restraints) Performing minimization step: 4665. Total energy = 3625.7378 kcal/mol (3616.0719 without restraints) Performing minimization step: 4666. Total energy = 3625.1488 kcal/mol (3615.4855 without restraints) Performing minimization step: 4667. Total energy = 3624.5606 kcal/mol (3614.9000 without restraints) Performing minimization step: 4668. Total energy = 3623.9731 kcal/mol (3614.3152 without restraints) Performing minimization step: 4669. Total energy = 3623.3854 kcal/mol (3613.7302 without restraints) Performing minimization step: 4670. Total energy = 3622.7980 kcal/mol (3613.1452 without restraints) Performing minimization step: 4671. Total energy = 3622.2115 kcal/mol (3612.5616 without restraints) Performing minimization step: 4672. Total energy = 3621.6255 kcal/mol (3611.9782 without restraints) Performing minimization step: 4673. Total energy = 3621.0401 kcal/mol (3611.3954 without restraints) Performing minimization step: 4674. Total energy = 3620.4552 kcal/mol (3610.8131 without restraints) Performing minimization step: 4675. Total energy = 3619.8708 kcal/mol (3610.2316 without restraints) Performing minimization step: 4676. Total energy = 3619.2869 kcal/mol (3609.6503 without restraints) Performing minimization step: 4677. Total energy = 3618.7035 kcal/mol (3609.0694 without restraints) Performing minimization step: 4678. Total energy = 3618.1203 kcal/mol (3608.4888 without restraints) Performing minimization step: 4679. Total energy = 3617.5379 kcal/mol (3607.9091 without restraints) Performing minimization step: 4680. Total energy = 3616.9557 kcal/mol (3607.3293 without restraints) Performing minimization step: 4681. Total energy = 3616.3739 kcal/mol (3606.7504 without restraints) Performing minimization step: 4682. Total energy = 3615.7934 kcal/mol (3606.1727 without restraints) Performing minimization step: 4683. Total energy = 3615.2131 kcal/mol (3605.5948 without restraints) Performing minimization step: 4684. Total energy = 3614.6329 kcal/mol (3605.0171 without restraints) Performing minimization step: 4685. Total energy = 3614.0528 kcal/mol (3604.4396 without restraints) Performing minimization step: 4686. Total energy = 3613.4731 kcal/mol (3603.8627 without restraints) Performing minimization step: 4687. Total energy = 3612.8945 kcal/mol (3603.2867 without restraints) Performing minimization step: 4688. Total energy = 3612.3162 kcal/mol (3602.7110 without restraints) Performing minimization step: 4689. Total energy = 3611.7390 kcal/mol (3602.1364 without restraints) Performing minimization step: 4690. Total energy = 3611.1618 kcal/mol (3601.5619 without restraints) Performing minimization step: 4691. Total energy = 3610.5850 kcal/mol (3600.9878 without restraints) Performing minimization step: 4692. Total energy = 3610.0089 kcal/mol (3600.4142 without restraints) Performing minimization step: 4693. Total energy = 3609.4332 kcal/mol (3599.8411 without restraints) Performing minimization step: 4694. Total energy = 3608.8582 kcal/mol (3599.2687 without restraints) Performing minimization step: 4695. Total energy = 3608.2834 kcal/mol (3598.6965 without restraints) Performing minimization step: 4696. Total energy = 3607.7085 kcal/mol (3598.1242 without restraints) Performing minimization step: 4697. Total energy = 3607.1345 kcal/mol (3597.5528 without restraints) Performing minimization step: 4698. Total energy = 3606.5609 kcal/mol (3596.9818 without restraints) Performing minimization step: 4699. Total energy = 3605.9877 kcal/mol (3596.4112 without restraints) Performing minimization step: 4700. Total energy = 3605.4153 kcal/mol (3595.8413 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 3604.8430 kcal/mol (3595.2717 without restraints) Performing minimization step: 4702. Total energy = 3604.2722 kcal/mol (3594.7035 without restraints) Performing minimization step: 4703. Total energy = 3603.7012 kcal/mol (3594.1350 without restraints) Performing minimization step: 4704. Total energy = 3603.1306 kcal/mol (3593.5670 without restraints) Performing minimization step: 4705. Total energy = 3602.5604 kcal/mol (3592.9993 without restraints) Performing minimization step: 4706. Total energy = 3601.9905 kcal/mol (3592.4322 without restraints) Performing minimization step: 4707. Total energy = 3601.4211 kcal/mol (3591.8653 without restraints) Performing minimization step: 4708. Total energy = 3600.8523 kcal/mol (3591.2990 without restraints) Performing minimization step: 4709. Total energy = 3600.2841 kcal/mol (3590.7336 without restraints) Performing minimization step: 4710. Total energy = 3599.7164 kcal/mol (3590.1684 without restraints) Performing minimization step: 4711. Total energy = 3599.1492 kcal/mol (3589.6037 without restraints) Performing minimization step: 4712. Total energy = 3598.5823 kcal/mol (3589.0394 without restraints) Performing minimization step: 4713. Total energy = 3598.0159 kcal/mol (3588.4756 without restraints) Performing minimization step: 4714. Total energy = 3597.4502 kcal/mol (3587.9124 without restraints) Performing minimization step: 4715. Total energy = 3596.8850 kcal/mol (3587.3501 without restraints) Performing minimization step: 4716. Total energy = 3596.3200 kcal/mol (3586.7874 without restraints) Performing minimization step: 4717. Total energy = 3595.7554 kcal/mol (3586.2253 without restraints) Performing minimization step: 4718. Total energy = 3595.1912 kcal/mol (3585.6637 without restraints) Performing minimization step: 4719. Total energy = 3594.6273 kcal/mol (3585.1023 without restraints) Performing minimization step: 4720. Total energy = 3594.0643 kcal/mol (3584.5422 without restraints) Performing minimization step: 4721. Total energy = 3593.5015 kcal/mol (3583.9816 without restraints) Performing minimization step: 4722. Total energy = 3592.9396 kcal/mol (3583.4224 without restraints) Performing minimization step: 4723. Total energy = 3592.3773 kcal/mol (3582.8625 without restraints) Performing minimization step: 4724. Total energy = 3591.8159 kcal/mol (3582.3037 without restraints) Performing minimization step: 4725. Total energy = 3591.2549 kcal/mol (3581.7452 without restraints) Performing minimization step: 4726. Total energy = 3590.6944 kcal/mol (3581.1874 without restraints) Performing minimization step: 4727. Total energy = 3590.1343 kcal/mol (3580.6299 without restraints) Performing minimization step: 4728. Total energy = 3589.5748 kcal/mol (3580.0728 without restraints) Performing minimization step: 4729. Total energy = 3589.0154 kcal/mol (3579.5160 without restraints) Performing minimization step: 4730. Total energy = 3588.4567 kcal/mol (3578.9598 without restraints) Performing minimization step: 4731. Total energy = 3587.8989 kcal/mol (3578.4045 without restraints) Performing minimization step: 4732. Total energy = 3587.3415 kcal/mol (3577.8497 without restraints) Performing minimization step: 4733. Total energy = 3586.7840 kcal/mol (3577.2947 without restraints) Performing minimization step: 4734. Total energy = 3586.2271 kcal/mol (3576.7404 without restraints) Performing minimization step: 4735. Total energy = 3585.6703 kcal/mol (3576.1862 without restraints) Performing minimization step: 4736. Total energy = 3585.1142 kcal/mol (3575.6325 without restraints) Performing minimization step: 4737. Total energy = 3584.5584 kcal/mol (3575.0793 without restraints) Performing minimization step: 4738. Total energy = 3584.0036 kcal/mol (3574.5270 without restraints) Performing minimization step: 4739. Total energy = 3583.4487 kcal/mol (3573.9746 without restraints) Performing minimization step: 4740. Total energy = 3582.8949 kcal/mol (3573.4233 without restraints) Performing minimization step: 4741. Total energy = 3582.3408 kcal/mol (3572.8717 without restraints) Performing minimization step: 4742. Total energy = 3581.7872 kcal/mol (3572.3207 without restraints) Performing minimization step: 4743. Total energy = 3581.2342 kcal/mol (3571.7702 without restraints) Performing minimization step: 4744. Total energy = 3580.6810 kcal/mol (3571.2196 without restraints) Performing minimization step: 4745. Total energy = 3580.1294 kcal/mol (3570.6706 without restraints) Performing minimization step: 4746. Total energy = 3579.5787 kcal/mol (3570.1223 without restraints) Performing minimization step: 4747. Total energy = 3579.0273 kcal/mol (3569.5734 without restraints) Performing minimization step: 4748. Total energy = 3578.4763 kcal/mol (3569.0249 without restraints) Performing minimization step: 4749. Total energy = 3577.9257 kcal/mol (3568.4768 without restraints) Performing minimization step: 4750. Total energy = 3577.3755 kcal/mol (3567.9291 without restraints) Performing minimization step: 4751. Total energy = 3576.8261 kcal/mol (3567.3822 without restraints) Performing minimization step: 4752. Total energy = 3576.2770 kcal/mol (3566.8357 without restraints) Performing minimization step: 4753. Total energy = 3575.7283 kcal/mol (3566.2894 without restraints) Performing minimization step: 4754. Total energy = 3575.1797 kcal/mol (3565.7433 without restraints) Performing minimization step: 4755. Total energy = 3574.6320 kcal/mol (3565.1981 without restraints) Performing minimization step: 4756. Total energy = 3574.0845 kcal/mol (3564.6531 without restraints) Performing minimization step: 4757. Total energy = 3573.5372 kcal/mol (3564.1083 without restraints) Performing minimization step: 4758. Total energy = 3572.9908 kcal/mol (3563.5644 without restraints) Performing minimization step: 4759. Total energy = 3572.4448 kcal/mol (3563.0209 without restraints) Performing minimization step: 4760. Total energy = 3571.8989 kcal/mol (3562.4775 without restraints) Performing minimization step: 4761. Total energy = 3571.3534 kcal/mol (3561.9345 without restraints) Performing minimization step: 4762. Total energy = 3570.8087 kcal/mol (3561.3923 without restraints) Performing minimization step: 4763. Total energy = 3570.2647 kcal/mol (3560.8508 without restraints) Performing minimization step: 4764. Total energy = 3569.7210 kcal/mol (3560.3095 without restraints) Performing minimization step: 4765. Total energy = 3569.1770 kcal/mol (3559.7678 without restraints) Performing minimization step: 4766. Total energy = 3568.6337 kcal/mol (3559.2272 without restraints) Performing minimization step: 4767. Total energy = 3568.0906 kcal/mol (3558.6866 without restraints) Performing minimization step: 4768. Total energy = 3567.5484 kcal/mol (3558.1470 without restraints) Performing minimization step: 4769. Total energy = 3567.0066 kcal/mol (3557.6075 without restraints) Performing minimization step: 4770. Total energy = 3566.4648 kcal/mol (3557.0681 without restraints) Performing minimization step: 4771. Total energy = 3565.9235 kcal/mol (3556.5294 without restraints) Performing minimization step: 4772. Total energy = 3565.3826 kcal/mol (3555.9909 without restraints) Performing minimization step: 4773. Total energy = 3564.8424 kcal/mol (3555.4533 without restraints) Performing minimization step: 4774. Total energy = 3564.3026 kcal/mol (3554.9158 without restraints) Performing minimization step: 4775. Total energy = 3563.7633 kcal/mol (3554.3790 without restraints) Performing minimization step: 4776. Total energy = 3563.2241 kcal/mol (3553.8421 without restraints) Performing minimization step: 4777. Total energy = 3562.6855 kcal/mol (3553.3061 without restraints) Performing minimization step: 4778. Total energy = 3562.1475 kcal/mol (3552.7706 without restraints) Performing minimization step: 4779. Total energy = 3561.6098 kcal/mol (3552.2353 without restraints) Performing minimization step: 4780. Total energy = 3561.0725 kcal/mol (3551.7005 without restraints) Performing minimization step: 4781. Total energy = 3560.5355 kcal/mol (3551.1659 without restraints) Performing minimization step: 4782. Total energy = 3559.9988 kcal/mol (3550.6317 without restraints) Performing minimization step: 4783. Total energy = 3559.4624 kcal/mol (3550.0978 without restraints) Performing minimization step: 4784. Total energy = 3558.9266 kcal/mol (3549.5644 without restraints) Performing minimization step: 4785. Total energy = 3558.3915 kcal/mol (3549.0317 without restraints) Performing minimization step: 4786. Total energy = 3557.8566 kcal/mol (3548.4993 without restraints) Performing minimization step: 4787. Total energy = 3557.3216 kcal/mol (3547.9667 without restraints) Performing minimization step: 4788. Total energy = 3556.7873 kcal/mol (3547.4349 without restraints) Performing minimization step: 4789. Total energy = 3556.2533 kcal/mol (3546.9033 without restraints) Performing minimization step: 4790. Total energy = 3555.7199 kcal/mol (3546.3723 without restraints) Performing minimization step: 4791. Total energy = 3555.1869 kcal/mol (3545.8418 without restraints) Performing minimization step: 4792. Total energy = 3554.6546 kcal/mol (3545.3119 without restraints) Performing minimization step: 4793. Total energy = 3554.1229 kcal/mol (3544.7826 without restraints) Performing minimization step: 4794. Total energy = 3553.5920 kcal/mol (3544.2542 without restraints) Performing minimization step: 4795. Total energy = 3553.0606 kcal/mol (3543.7252 without restraints) Performing minimization step: 4796. Total energy = 3552.5297 kcal/mol (3543.1967 without restraints) Performing minimization step: 4797. Total energy = 3551.9992 kcal/mol (3542.6686 without restraints) Performing minimization step: 4798. Total energy = 3551.4691 kcal/mol (3542.1407 without restraints) Performing minimization step: 4799. Total energy = 3550.9389 kcal/mol (3541.6131 without restraints) Performing minimization step: 4800. Total energy = 3550.4093 kcal/mol (3541.0859 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 3549.8809 kcal/mol (3540.5600 without restraints) Performing minimization step: 4802. Total energy = 3549.3521 kcal/mol (3540.0336 without restraints) Performing minimization step: 4803. Total energy = 3548.8241 kcal/mol (3539.5081 without restraints) Performing minimization step: 4804. Total energy = 3548.2965 kcal/mol (3538.9829 without restraints) Performing minimization step: 4805. Total energy = 3547.7694 kcal/mol (3538.4581 without restraints) Performing minimization step: 4806. Total energy = 3547.2425 kcal/mol (3537.9335 without restraints) Performing minimization step: 4807. Total energy = 3546.7159 kcal/mol (3537.4094 without restraints) Performing minimization step: 4808. Total energy = 3546.1900 kcal/mol (3536.8860 without restraints) Performing minimization step: 4809. Total energy = 3545.6641 kcal/mol (3536.3625 without restraints) Performing minimization step: 4810. Total energy = 3545.1386 kcal/mol (3535.8394 without restraints) Performing minimization step: 4811. Total energy = 3544.6140 kcal/mol (3535.3171 without restraints) Performing minimization step: 4812. Total energy = 3544.0897 kcal/mol (3534.7952 without restraints) Performing minimization step: 4813. Total energy = 3543.5656 kcal/mol (3534.2737 without restraints) Performing minimization step: 4814. Total energy = 3543.0418 kcal/mol (3533.7521 without restraints) Performing minimization step: 4815. Total energy = 3542.5183 kcal/mol (3533.2310 without restraints) Performing minimization step: 4816. Total energy = 3541.9950 kcal/mol (3532.7101 without restraints) Performing minimization step: 4817. Total energy = 3541.4724 kcal/mol (3532.1899 without restraints) Performing minimization step: 4818. Total energy = 3540.9501 kcal/mol (3531.6700 without restraints) Performing minimization step: 4819. Total energy = 3540.4279 kcal/mol (3531.1502 without restraints) Performing minimization step: 4820. Total energy = 3539.9065 kcal/mol (3530.6312 without restraints) Performing minimization step: 4821. Total energy = 3539.3853 kcal/mol (3530.1123 without restraints) Performing minimization step: 4822. Total energy = 3538.8647 kcal/mol (3529.5941 without restraints) Performing minimization step: 4823. Total energy = 3538.3442 kcal/mol (3529.0760 without restraints) Performing minimization step: 4824. Total energy = 3537.8247 kcal/mol (3528.5588 without restraints) Performing minimization step: 4825. Total energy = 3537.3048 kcal/mol (3528.0413 without restraints) Performing minimization step: 4826. Total energy = 3536.7860 kcal/mol (3527.5249 without restraints) Performing minimization step: 4827. Total energy = 3536.2672 kcal/mol (3527.0085 without restraints) Performing minimization step: 4828. Total energy = 3535.7492 kcal/mol (3526.4928 without restraints) Performing minimization step: 4829. Total energy = 3535.2314 kcal/mol (3525.9775 without restraints) Performing minimization step: 4830. Total energy = 3534.7141 kcal/mol (3525.4628 without restraints) Performing minimization step: 4831. Total energy = 3534.1970 kcal/mol (3524.9478 without restraints) Performing minimization step: 4832. Total energy = 3533.6805 kcal/mol (3524.4336 without restraints) Performing minimization step: 4833. Total energy = 3533.1644 kcal/mol (3523.9198 without restraints) Performing minimization step: 4834. Total energy = 3532.6481 kcal/mol (3523.4059 without restraints) Performing minimization step: 4835. Total energy = 3532.1324 kcal/mol (3522.8926 without restraints) Performing minimization step: 4836. Total energy = 3531.6169 kcal/mol (3522.3794 without restraints) Performing minimization step: 4837. Total energy = 3531.1024 kcal/mol (3521.8673 without restraints) Performing minimization step: 4838. Total energy = 3530.5882 kcal/mol (3521.3556 without restraints) Performing minimization step: 4839. Total energy = 3530.0742 kcal/mol (3520.8438 without restraints) Performing minimization step: 4840. Total energy = 3529.5605 kcal/mol (3520.3324 without restraints) Performing minimization step: 4841. Total energy = 3529.0470 kcal/mol (3519.8213 without restraints) Performing minimization step: 4842. Total energy = 3528.5340 kcal/mol (3519.3106 without restraints) Performing minimization step: 4843. Total energy = 3528.0214 kcal/mol (3518.8004 without restraints) Performing minimization step: 4844. Total energy = 3527.5093 kcal/mol (3518.2907 without restraints) Performing minimization step: 4845. Total energy = 3526.9972 kcal/mol (3517.7808 without restraints) Performing minimization step: 4846. Total energy = 3526.4860 kcal/mol (3517.2719 without restraints) Performing minimization step: 4847. Total energy = 3525.9744 kcal/mol (3516.7626 without restraints) Performing minimization step: 4848. Total energy = 3525.4635 kcal/mol (3516.2541 without restraints) Performing minimization step: 4849. Total energy = 3524.9526 kcal/mol (3515.7456 without restraints) Performing minimization step: 4850. Total energy = 3524.4423 kcal/mol (3515.2376 without restraints) Performing minimization step: 4851. Total energy = 3523.9332 kcal/mol (3514.7308 without restraints) Performing minimization step: 4852. Total energy = 3523.4235 kcal/mol (3514.2235 without restraints) Performing minimization step: 4853. Total energy = 3522.9145 kcal/mol (3513.7167 without restraints) Performing minimization step: 4854. Total energy = 3522.4057 kcal/mol (3513.2102 without restraints) Performing minimization step: 4855. Total energy = 3521.8973 kcal/mol (3512.7042 without restraints) Performing minimization step: 4856. Total energy = 3521.3895 kcal/mol (3512.1987 without restraints) Performing minimization step: 4857. Total energy = 3520.8817 kcal/mol (3511.6932 without restraints) Performing minimization step: 4858. Total energy = 3520.3741 kcal/mol (3511.1878 without restraints) Performing minimization step: 4859. Total energy = 3519.8674 kcal/mol (3510.6835 without restraints) Performing minimization step: 4860. Total energy = 3519.3606 kcal/mol (3510.1790 without restraints) Performing minimization step: 4861. Total energy = 3518.8542 kcal/mol (3509.6750 without restraints) Performing minimization step: 4862. Total energy = 3518.3483 kcal/mol (3509.1715 without restraints) Performing minimization step: 4863. Total energy = 3517.8430 kcal/mol (3508.6684 without restraints) Performing minimization step: 4864. Total energy = 3517.3381 kcal/mol (3508.1658 without restraints) Performing minimization step: 4865. Total energy = 3516.8336 kcal/mol (3507.6636 without restraints) Performing minimization step: 4866. Total energy = 3516.3293 kcal/mol (3507.1616 without restraints) Performing minimization step: 4867. Total energy = 3515.8250 kcal/mol (3506.6596 without restraints) Performing minimization step: 4868. Total energy = 3515.3210 kcal/mol (3506.1580 without restraints) Performing minimization step: 4869. Total energy = 3514.8178 kcal/mol (3505.6570 without restraints) Performing minimization step: 4870. Total energy = 3514.3146 kcal/mol (3505.1561 without restraints) Performing minimization step: 4871. Total energy = 3513.8117 kcal/mol (3504.6555 without restraints) Performing minimization step: 4872. Total energy = 3513.3091 kcal/mol (3504.1551 without restraints) Performing minimization step: 4873. Total energy = 3512.8072 kcal/mol (3503.6557 without restraints) Performing minimization step: 4874. Total energy = 3512.3055 kcal/mol (3503.1562 without restraints) Performing minimization step: 4875. Total energy = 3511.8040 kcal/mol (3502.6568 without restraints) Performing minimization step: 4876. Total energy = 3511.3030 kcal/mol (3502.1583 without restraints) Performing minimization step: 4877. Total energy = 3510.8024 kcal/mol (3501.6599 without restraints) Performing minimization step: 4878. Total energy = 3510.3019 kcal/mol (3501.1617 without restraints) Performing minimization step: 4879. Total energy = 3509.8019 kcal/mol (3500.6639 without restraints) Performing minimization step: 4880. Total energy = 3509.3022 kcal/mol (3500.1666 without restraints) Performing minimization step: 4881. Total energy = 3508.8031 kcal/mol (3499.6698 without restraints) Performing minimization step: 4882. Total energy = 3508.3048 kcal/mol (3499.1736 without restraints) Performing minimization step: 4883. Total energy = 3507.8066 kcal/mol (3498.6777 without restraints) Performing minimization step: 4884. Total energy = 3507.3079 kcal/mol (3498.1813 without restraints) Performing minimization step: 4885. Total energy = 3506.8100 kcal/mol (3497.6856 without restraints) Performing minimization step: 4886. Total energy = 3506.3130 kcal/mol (3497.1911 without restraints) Performing minimization step: 4887. Total energy = 3505.8164 kcal/mol (3496.6966 without restraints) Performing minimization step: 4888. Total energy = 3505.3203 kcal/mol (3496.2031 without restraints) Performing minimization step: 4889. Total energy = 3504.8240 kcal/mol (3495.7087 without restraints) Performing minimization step: 4890. Total energy = 3504.3282 kcal/mol (3495.2152 without restraints) Performing minimization step: 4891. Total energy = 3503.8326 kcal/mol (3494.7217 without restraints) Performing minimization step: 4892. Total energy = 3503.3372 kcal/mol (3494.2288 without restraints) Performing minimization step: 4893. Total energy = 3502.8422 kcal/mol (3493.7360 without restraints) Performing minimization step: 4894. Total energy = 3502.3477 kcal/mol (3493.2438 without restraints) Performing minimization step: 4895. Total energy = 3501.8534 kcal/mol (3492.7517 without restraints) Performing minimization step: 4896. Total energy = 3501.3595 kcal/mol (3492.2599 without restraints) Performing minimization step: 4897. Total energy = 3500.8655 kcal/mol (3491.7683 without restraints) Performing minimization step: 4898. Total energy = 3500.3723 kcal/mol (3491.2773 without restraints) Performing minimization step: 4899. Total energy = 3499.8792 kcal/mol (3490.7864 without restraints) Performing minimization step: 4900. Total energy = 3499.3862 kcal/mol (3490.2957 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 3498.8937 kcal/mol (3489.8055 without restraints) Performing minimization step: 4902. Total energy = 3498.4020 kcal/mol (3489.3161 without restraints) Performing minimization step: 4903. Total energy = 3497.9103 kcal/mol (3488.8265 without restraints) Performing minimization step: 4904. Total energy = 3497.4187 kcal/mol (3488.3373 without restraints) Performing minimization step: 4905. Total energy = 3496.9280 kcal/mol (3487.8487 without restraints) Performing minimization step: 4906. Total energy = 3496.4373 kcal/mol (3487.3603 without restraints) Performing minimization step: 4907. Total energy = 3495.9469 kcal/mol (3486.8720 without restraints) Performing minimization step: 4908. Total energy = 3495.4568 kcal/mol (3486.3843 without restraints) Performing minimization step: 4909. Total energy = 3494.9677 kcal/mol (3485.8974 without restraints) Performing minimization step: 4910. Total energy = 3494.4780 kcal/mol (3485.4099 without restraints) Performing minimization step: 4911. Total energy = 3493.9892 kcal/mol (3484.9233 without restraints) Performing minimization step: 4912. Total energy = 3493.5005 kcal/mol (3484.4368 without restraints) Performing minimization step: 4913. Total energy = 3493.0122 kcal/mol (3483.9508 without restraints) Performing minimization step: 4914. Total energy = 3492.5242 kcal/mol (3483.4649 without restraints) Performing minimization step: 4915. Total energy = 3492.0361 kcal/mol (3482.9790 without restraints) Performing minimization step: 4916. Total energy = 3491.5486 kcal/mol (3482.4938 without restraints) Performing minimization step: 4917. Total energy = 3491.0617 kcal/mol (3482.0090 without restraints) Performing minimization step: 4918. Total energy = 3490.5748 kcal/mol (3481.5244 without restraints) Performing minimization step: 4919. Total energy = 3490.0883 kcal/mol (3481.0400 without restraints) Performing minimization step: 4920. Total energy = 3489.6019 kcal/mol (3480.5560 without restraints) Performing minimization step: 4921. Total energy = 3489.1161 kcal/mol (3480.0723 without restraints) Performing minimization step: 4922. Total energy = 3488.6306 kcal/mol (3479.5889 without restraints) Performing minimization step: 4923. Total energy = 3488.1456 kcal/mol (3479.1061 without restraints) Performing minimization step: 4924. Total energy = 3487.6610 kcal/mol (3478.6237 without restraints) Performing minimization step: 4925. Total energy = 3487.1766 kcal/mol (3478.1417 without restraints) Performing minimization step: 4926. Total energy = 3486.6927 kcal/mol (3477.6600 without restraints) Performing minimization step: 4927. Total energy = 3486.2089 kcal/mol (3477.1782 without restraints) Performing minimization step: 4928. Total energy = 3485.7251 kcal/mol (3476.6965 without restraints) Performing minimization step: 4929. Total energy = 3485.2416 kcal/mol (3476.2154 without restraints) Performing minimization step: 4930. Total energy = 3484.7588 kcal/mol (3475.7346 without restraints) Performing minimization step: 4931. Total energy = 3484.2763 kcal/mol (3475.2544 without restraints) Performing minimization step: 4932. Total energy = 3483.7941 kcal/mol (3474.7745 without restraints) Performing minimization step: 4933. Total energy = 3483.3116 kcal/mol (3474.2941 without restraints) Performing minimization step: 4934. Total energy = 3482.8299 kcal/mol (3473.8146 without restraints) Performing minimization step: 4935. Total energy = 3482.3488 kcal/mol (3473.3358 without restraints) Performing minimization step: 4936. Total energy = 3481.8678 kcal/mol (3472.8569 without restraints) Performing minimization step: 4937. Total energy = 3481.3870 kcal/mol (3472.3782 without restraints) Performing minimization step: 4938. Total energy = 3480.9066 kcal/mol (3471.9000 without restraints) Performing minimization step: 4939. Total energy = 3480.4270 kcal/mol (3471.4225 without restraints) Performing minimization step: 4940. Total energy = 3479.9471 kcal/mol (3470.9450 without restraints) Performing minimization step: 4941. Total energy = 3479.4678 kcal/mol (3470.4679 without restraints) Performing minimization step: 4942. Total energy = 3478.9889 kcal/mol (3469.9910 without restraints) Performing minimization step: 4943. Total energy = 3478.5104 kcal/mol (3469.5148 without restraints) Performing minimization step: 4944. Total energy = 3478.0324 kcal/mol (3469.0390 without restraints) Performing minimization step: 4945. Total energy = 3477.5544 kcal/mol (3468.5631 without restraints) Performing minimization step: 4946. Total energy = 3477.0771 kcal/mol (3468.0878 without restraints) Performing minimization step: 4947. Total energy = 3476.5991 kcal/mol (3467.6121 without restraints) Performing minimization step: 4948. Total energy = 3476.1219 kcal/mol (3467.1369 without restraints) Performing minimization step: 4949. Total energy = 3475.6446 kcal/mol (3466.6619 without restraints) Performing minimization step: 4950. Total energy = 3475.1680 kcal/mol (3466.1874 without restraints) Performing minimization step: 4951. Total energy = 3474.6919 kcal/mol (3465.7135 without restraints) Performing minimization step: 4952. Total energy = 3474.2166 kcal/mol (3465.2403 without restraints) Performing minimization step: 4953. Total energy = 3473.7408 kcal/mol (3464.7667 without restraints) Performing minimization step: 4954. Total energy = 3473.2657 kcal/mol (3464.2939 without restraints) Performing minimization step: 4955. Total energy = 3472.7908 kcal/mol (3463.8210 without restraints) Performing minimization step: 4956. Total energy = 3472.3161 kcal/mol (3463.3484 without restraints) Performing minimization step: 4957. Total energy = 3471.8423 kcal/mol (3462.8768 without restraints) Performing minimization step: 4958. Total energy = 3471.3682 kcal/mol (3462.4048 without restraints) Performing minimization step: 4959. Total energy = 3470.8943 kcal/mol (3461.9331 without restraints) Performing minimization step: 4960. Total energy = 3470.4207 kcal/mol (3461.4616 without restraints) Performing minimization step: 4961. Total energy = 3469.9472 kcal/mol (3460.9902 without restraints) Performing minimization step: 4962. Total energy = 3469.4747 kcal/mol (3460.5198 without restraints) Performing minimization step: 4963. Total energy = 3469.0022 kcal/mol (3460.0495 without restraints) Performing minimization step: 4964. Total energy = 3468.5300 kcal/mol (3459.5794 without restraints) Performing minimization step: 4965. Total energy = 3468.0579 kcal/mol (3459.1095 without restraints) Performing minimization step: 4966. Total energy = 3467.5862 kcal/mol (3458.6399 without restraints) Performing minimization step: 4967. Total energy = 3467.1151 kcal/mol (3458.1711 without restraints) Performing minimization step: 4968. Total energy = 3466.6441 kcal/mol (3457.7021 without restraints) Performing minimization step: 4969. Total energy = 3466.1735 kcal/mol (3457.2336 without restraints) Performing minimization step: 4970. Total energy = 3465.7030 kcal/mol (3456.7652 without restraints) Performing minimization step: 4971. Total energy = 3465.2331 kcal/mol (3456.2976 without restraints) Performing minimization step: 4972. Total energy = 3464.7636 kcal/mol (3455.8302 without restraints) Performing minimization step: 4973. Total energy = 3464.2943 kcal/mol (3455.3629 without restraints) Performing minimization step: 4974. Total energy = 3463.8251 kcal/mol (3454.8959 without restraints) Performing minimization step: 4975. Total energy = 3463.3558 kcal/mol (3454.4285 without restraints) Performing minimization step: 4976. Total energy = 3462.8876 kcal/mol (3453.9626 without restraints) Performing minimization step: 4977. Total energy = 3462.4189 kcal/mol (3453.4959 without restraints) Performing minimization step: 4978. Total energy = 3461.9508 kcal/mol (3453.0300 without restraints) Performing minimization step: 4979. Total energy = 3461.4831 kcal/mol (3452.5643 without restraints) Performing minimization step: 4980. Total energy = 3461.0158 kcal/mol (3452.0991 without restraints) Performing minimization step: 4981. Total energy = 3460.5489 kcal/mol (3451.6343 without restraints) Performing minimization step: 4982. Total energy = 3460.0822 kcal/mol (3451.1697 without restraints) Performing minimization step: 4983. Total energy = 3459.6156 kcal/mol (3450.7052 without restraints) Performing minimization step: 4984. Total energy = 3459.1497 kcal/mol (3450.2416 without restraints) Performing minimization step: 4985. Total energy = 3458.6839 kcal/mol (3449.7777 without restraints) Performing minimization step: 4986. Total energy = 3458.2182 kcal/mol (3449.3142 without restraints) Performing minimization step: 4987. Total energy = 3457.7528 kcal/mol (3448.8509 without restraints) Performing minimization step: 4988. Total energy = 3457.2877 kcal/mol (3448.3880 without restraints) Performing minimization step: 4989. Total energy = 3456.8229 kcal/mol (3447.9252 without restraints) Performing minimization step: 4990. Total energy = 3456.3583 kcal/mol (3447.4626 without restraints) Performing minimization step: 4991. Total energy = 3455.8941 kcal/mol (3447.0005 without restraints) Performing minimization step: 4992. Total energy = 3455.4303 kcal/mol (3446.5388 without restraints) Performing minimization step: 4993. Total energy = 3454.9670 kcal/mol (3446.0775 without restraints) Performing minimization step: 4994. Total energy = 3454.5033 kcal/mol (3445.6160 without restraints) Performing minimization step: 4995. Total energy = 3454.0403 kcal/mol (3445.1551 without restraints) Performing minimization step: 4996. Total energy = 3453.5777 kcal/mol (3444.6945 without restraints) Performing minimization step: 4997. Total energy = 3453.1158 kcal/mol (3444.2347 without restraints) Performing minimization step: 4998. Total energy = 3452.6538 kcal/mol (3443.7748 without restraints) Performing minimization step: 4999. Total energy = 3452.1922 kcal/mol (3443.3153 without restraints) Performing minimization step: 5000. Total energy = 3451.7299 kcal/mol (3442.8549 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/dc33afc8/tmp/5f9i_refx/5f9i_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to 5f9i_refx.pdb DONE!