# ccGAAAgg-loop.pdb #
****************************************************************************
    DSSR: Software for Defining the (Secondary) Structures of RNA
      by Xiang-Jun Lu (xiangjun@x3dna.org), beta-r08-on-20130323

   The program is currently under active development. As always, we
   greatly appreciate your feedback! Please report all DSSR-related
   issues on the 3DNA Forum (http://forum.x3dna.org/), and I strive
   to promptly respond to any questions posted there.
****************************************************************************
Date and time: Sun Dec 10 20:43:04 2023
File name: ccGAAAgg-loop.pdb
    no. of DNA/RNA chains: 1 [A=8]
    no. of nucleotides:    8
    no. of waters:         0
    no. of metals:         0
****************************************************************************
List of 3 base pair(s)
   1 A.C40            A.G47            [C-G] WC           19-XIX    cWW cW-W
       -169.2(anti) C3'-endo lambda=56.4; -171.7(anti) C3'-endo lambda=54.4
       d(C1'-C1')=10.49 d(N1-N9)=8.81 d(C6-C8)=9.79 tor(N1-C1'-C1'-N9)=-4.3
       H-bonds[3]: "O2(carbonyl)-N2(amino)[2.64]; N3-N1(imino)[2.75]; N4(amino)-O6(carbonyl)[2.91]"
       bp_pars: [0.38    -0.26   -0.18   1.69    -11.54  2.60]
   2 A.C41            A.G46            [C-G] WC           19-XIX    cWW cW-W
       -161.6(anti) C3'-endo lambda=54.9; -178.2(anti) C3'-endo lambda=51.4
       d(C1'-C1')=10.65 d(N1-N9)=8.88 d(C6-C8)=9.76 tor(N1-C1'-C1'-N9)=2.6
       H-bonds[3]: "O2(carbonyl)-N2(amino)[2.69]; N3-N1(imino)[2.80]; N4(amino)-O6(carbonyl)[2.76]"
       bp_pars: [0.42    -0.29   -0.06   -0.97   0.32    -1.87]
   3 A.G42            A.A45            [G-A]              00-n/a    tSH tm-M
       -167.1(anti) C3'-endo lambda=81.8; -136.4(anti) C3'-endo lambda=20.5
       d(C1'-C1')=10.42 d(N1-N9)=9.05 d(C6-C8)=8.94 tor(N1-C1'-C1'-N9)=-145.2
       H-bonds[3]: "N1(imino)-OP2[3.24]; N2(amino)-N7[3.08]; N2(amino)-OP2[2.75]"
       bp_pars: [7.96    -5.09   0.86    9.36    -7.95   -46.77]
****************************************************************************
List of 1 helix
  helix=1[1] bps=3
   1 A.C40            A.G47            [C-G] WC           19-XIX    cWW cW-W
   2 A.C41            A.G46            [C-G] WC           19-XIX    cWW cW-W
   3 A.G42            A.A45            [G-A]              00-n/a    tSH tm-M
****************************************************************************
List of 1 stem
  stem=1[#1] bps=2
   1 A.C40            A.G47            [C-G] WC           19-XIX    cWW cW-W
   2 A.C41            A.G46            [C-G] WC           19-XIX    cWW cW-W
****************************************************************************
List of 1 hairpin loop(s)
   1 nts=4 GAAA closed by pair {A.C41+A.G46 [CG], #1}
       A.C41+A.G42+A.A43+A.A44+A.A45+A.G46 [CGAAAG]
****************************************************************************
>chain-A #1 RNA with 8 nts
CCGAAAGG
((....))

DONE!