==> boltz2_minimized_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Tue Jan 27 13:19:50 2026
ATOM      1  P     C A   1       4.716  17.738   6.473  1.00 51.82           P  
ATOM      2  OP1   C A   1       4.239  17.106   7.724  1.00 51.82           O  
ATOM      3  OP2   C A   1       5.310  19.051   6.811  1.00 51.82           O  
ATOM      4  O5'   C A   1       5.793  16.811   5.735  1.00 51.82           O  
ATOM      5  C5'   C A   1       5.523  15.428   5.413  1.00 51.82           C  
ATOM      6  C4'   C A   1       6.858  14.683   5.406  1.00 51.82           C  

==> farfar1_minimized_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Tue Jan 27 13:19:51 2026
REMARK 250 Fixed atoms/residues:
REMARK 250  - add OP3 at the beginning of the chain  in chain: A <Residue C het=  resseq=1 icode= > residue # 1
ATOM      1  P     C A   1       0.035  -0.018  -0.500  1.00 11.89           P  
ATOM      2  OP1   C A   1      -0.285   0.802  -1.693  1.00 14.35           O  
ATOM      3  OP2   C A   1      -0.354  -1.436  -0.441  1.00 12.68           O  
ATOM      4  O5'   C A   1       1.591   0.023  -0.186  1.00 10.34           O  

==> rnacomposer_minimized_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Tue Jan 27 13:19:52 2026
REMARK 250 Fixed atoms/residues:
REMARK 250  - add OP3 at the beginning of the chain  in chain: A <Residue C het=  resseq=1 icode= > residue # 1
ATOM      1  P     C A   1       1.141  -0.064  -2.057  1.00 11.89           P  
ATOM      2  OP1   C A   1       2.225   0.771  -2.630  1.00 14.35           O  
ATOM      3  OP2   C A   1       0.897  -1.424  -2.565  1.00 12.68           O  
ATOM      4  O5'   C A   1       1.309  -0.205  -0.484  1.00 10.34           O  

==> simrna2_minimized_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Tue Jan 27 13:19:52 2026
ATOM      1  P     C A   1      -3.603  -2.582   4.269  1.00  0.00           P  
ATOM      2  OP1   C A   1      -4.843  -1.829   4.563  1.00  0.00           O  
ATOM      3  OP2   C A   1      -3.030  -2.097   2.995  1.00  0.00           O  
ATOM      4  O5'   C A   1      -2.501  -2.411   5.410  1.00  0.00           O  
ATOM      5  C5'   C A   1      -2.854  -2.065   6.756  1.00  0.00           C  
ATOM      6  C4'   C A   1      -1.836  -1.092   7.324  1.00  0.00           C  

==> simrna3_minimized_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Tue Jan 27 13:19:53 2026
ATOM      1  P     C A   1      -9.920  -7.774   5.240  1.00  0.00           P  
ATOM      2  OP1   C A   1      -9.038  -8.963   5.226  1.00  0.00           O  
ATOM      3  OP2   C A   1      -9.378  -6.794   6.202  1.00  0.00           O  
ATOM      4  O5'   C A   1      -9.992  -7.114   3.778  1.00  0.00           O  
ATOM      5  C5'   C A   1      -8.823  -6.429   3.268  1.00  0.00           C  
ATOM      6  C4'   C A   1      -9.088  -5.565   1.988  1.00  0.00           C  
DONE!