==> 6v39_selected_rpr.pdb <==
/home/ubuntu/.local/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:127: PDBConstructionWarning: WARNING: Residue (' ', 3, ' ') redefined at line 32786.
  warnings.warn(
/home/ubuntu/.local/lib/python3.8/site-packages/Bio/PDB/PDBParser.py:416: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue ARG (' ', 3, ' ') at line 32786.
Exception ignored.
Some atoms or residues may be missing in the data structure.
  warnings.warn(
/home/ubuntu/.local/lib/python3.8/site-packages/Bio/PDB/StructureBuilder.py:127: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 32797.
  warnings.warn(
/home/ubuntu/.local/lib/python3.8/site-packages/Bio/PDB/PDBParser.py:416: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 32797.
Exception ignored.

==> fold_2026_01_18_22_55_model_4_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Sun Jan 18 23:36:28 2026
ATOM      1  P     G A   1       9.388 -34.134  34.673  1.00 30.04      A    P  
ATOM      2  OP1   G A   1       9.211 -32.745  34.266  1.00 28.43      A    O  
ATOM      3  OP2   G A   1       8.642 -35.178  33.936  1.00 29.34      A    O  
ATOM      4  O5'   G A   1      10.937 -34.478  34.482  1.00 30.46      A    O  
ATOM      5  C5'   G A   1      11.919 -33.948  35.348  1.00 31.69      A    C  
ATOM      6  C4'   G A   1      13.287 -34.443  35.002  1.00 34.43      A    C  

==> main_consensus_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Sun Jan 18 23:36:28 2026
REMARK 250 Fixed atoms/residues:
REMARK 250  - add OP3 at the beginning of the chain  in chain: A <Residue G het=  resseq=1 icode= > residue # 1
ATOM      1  P     G A   1       1.444  -1.601  -2.036  1.00 11.89           P  
ATOM      2  OP1   G A   1       2.706  -1.200  -2.703  1.00 14.35           O  
ATOM      3  OP2   G A   1       0.925  -2.971  -2.179  1.00 12.68           O  
ATOM      4  O5'   G A   1       1.515  -1.319  -0.475  1.00 10.34           O  

==> r2dt_rfam_pred_rpr.pdb <==
REMARK 250 Model edited with rna-tools
REMARK 250  ver 3.8.13.1+39.gca2dada6.dirty 
REMARK 250  https://github.com/mmagnus/rna-tools 
REMARK 250  Sun Jan 18 23:36:29 2026
REMARK 250 Fixed atoms/residues:
REMARK 250  - add OP3 at the beginning of the chain  in chain: A <Residue G het=  resseq=1 icode= > residue # 1
ATOM      1  P     G A   1      -0.469   0.389  -2.093  1.00 11.89           P  
ATOM      2  OP1   G A   1       0.128  -0.667  -2.946  1.00 14.35           O  
ATOM      3  OP2   G A   1      -1.929   0.575  -2.046  1.00 12.68           O  
ATOM      4  O5'   G A   1       0.002   0.232  -0.585  1.00 10.34           O  
DONE!